This application claims the benefit of International Application No. PCT/IN2010/000209, filed on Mar. 31, 2010, which in turn claims priority to Indian Patent Application No. 3194/CHE/2009, filed Dec. 29, 2009, the contents of which are both hereby incorporated by reference.
The present invention describes establishment of a cell based functional assay for 5-HT2A, histamine H1 or adrenergic alpha 1b receptors, by determining the level of intracellular cAMP levels utilizing reporter gene driven cell based assay. The novel assay described in the current invention, combines features of binding and functional mode in a single type of experimental set up which offers both binding affinity as well as mode of action of compounds interacting with any 5-HT2A, histamine H1 or adrenergic alpha 1b receptors in a single set. The novel assay of the invention is useful in identification of compounds acting through 5-HT2A, histamine H1 or adrenergic alpha 1b receptors and their further categorization based on the mode of action. The assay may find high utility in screening of new chemical entities for identification of novel drugs acting through 5-HT2A, histamine H1 or adrenergic alpha 1b receptors. Moreover, the novel assay can also be utilized in exploring the mode of action of established and known drugs and assignment of their pharmacological properties.
GPCRs also known as seven-transmembrane domain receptors comprise a large protein family of transmembrane receptors that sense molecules outside the cell and activate inside signal transduction pathways and ultimately cellular responses. GPCRs are involved in various physiological functions as well as many diseases, and are also the target of around half of all modem medicinal drugs. There are two principal signal transduction pathways involving the GPCRs: cAMP signal pathway and Phosphatidylinositol signal pathway.
The cytoplasmic tail region of GPCRs interacts to one of the three main classes of G proteins. G proteins are composed of a common βγ subunit and a specific α subunit. The role of the α subunit is well known for translating the extracellular cues to intracellular responses. G proteins are mainly classified into three categories based on the nature of their subunits. G proteins containing Gαs or Gαi subunits enhance or reduce the cAMP level respectively upon receptor stimulation through adenylate cyclase enzyme. In contrast, G proteins comprising Gαq subunit mobilize intracellular calcium ions upon activation of the receptor through a membrane bound phospholipase C enzyme. In recent years, Gβγ subunits turned out to be more than a silent partner. They too transmit the message through activation of ERK-MAPK pathways.
The molecular diversity of GPCR-mediated signal transduction pathway complicates the configuration of a common functional assay. The development of high through-put functional assays for GPCRs would greatly enhance the ability to discover and develop novel agonists and antagonists to this important superfamily of pharmaceutical targets. One approach for developing a high through-put functional GPCR assay is the use of reporter gene assays. Reporter gene constructs couple transcriptional enhancers that are regulated by various intracellular second messengers with appropriate promoter and reporter gene elements to produce a surrogate signal transduction system responsive to signaling pathways activated by various hormone receptors (Deschamps, Science, 1985 230:1174-7; Montminy, Proc. Nail. Acad Sci USA, 1986 83:6682-6686; Angel, Cell, 1987, 49:729-39; Fisch, Mol. Cell. Biol, 1989 9:1327-31). With the appropriate choice of transcriptional enhancers, promoters, and reporter genes, non-radiometric functional assays have been configured for Gαs coupled GPCRs (Konig, Mol. Cell. Neurosciences, 1991, 2:331-337; Chen, Anal. Biochemistry, 1995, 226: 349-354) and Gαq coupled GPCRs (Weyer, Receptor and Channels, 1993 1:193-200) that are amenable to high through-put screening technology.
Earlier, some assays have been developed for the identification of GPCRs. However, some disadvantages are associated with the traditional radioligand binding assay and FLIPR based functional assays. In traditional binding assay a) hazardous radioactive ligands are used; b) the mode of action of a molecule needs to be further investigated using a separate radioactive or cell based functional assay. In the FLIPR based functional assay (European patent application: EP1310800), fluorescent counts are measured within 5 seconds of compound injection which may not be sufficient to bring the compound in equilibrium with the receptor. As a result of shorter incubation of compounds in FLIPR assay, important compounds may be missed out or artefactual values may be generated.
In order to overcome the above mentioned disadvantages, we have developed novel functional assay for 5-HT2A, histamine H1 or adrenergic alpha 1b receptors based on measurement of intracellular cAMP levels by measuring reporter gene activity:
Thus, the reporter gene based assay may be more in line with the physiological conditions wherein the drug is allowed to interact with the target receptor in the body.
In one aspect, the present invention provides a novel functional assay method for identification of compounds acting through GPCRs, which comprises:
In one aspect, the present invention provides a novel functional assay method for identification of compounds acting through 5-HT2A, histamine H1 or adrenergic alpha 1b receptors, which comprises:
In another aspect, total RNA isolated from each cell line was used in the cDNA synthesis.
In further aspect, radioligand binding and competition assays were performed with membranes prepared from the recombinant CHO cell lines.
In yet another aspect, mode of action (agonist or antagonist) as well as binding affinity of the ligand (pKb or pEC50) is derived from the same experiment.
Luciferin, T4 DNA Ligase, high fidelity Taq polymerase, superscript reverse transcriptade, mammalian vector pcDNA3.1, CRE-Luc reporter gene, cell culture media, sera, radioligands Ketanserin Hydrochloride [ethylene-3H] 60-90 Ci/mmol, Prazosin [7-methoxy-3H] 70-87 Ci/mmole, Pyrilamine [pyridinyl 5-3H], (Mepyramine) 20-30 Ci/mmol, scintillation proximity assay beads, Human 5-HT2A cDNA clone, Adrenergic alpha1b cDNA clone, all other DNA restriction enzymes, modification enzymes, all other reagents and common chemicals were purchased from well known suppliers.
Human 5-HT2A cDNA clone was amplified by polymerase chain reaction (PCR) using gene specific primers. Adrenergic alpha1b cDNA clone was amplified by PCR using gene specific primers. Human histamine H1 cDNA was generated by reverse transcription using total RNA isolated from HepG2, 1MR32, HEK293 and CaCo2 cell lines and gene specific reverse primers. The cDNA was amplified by PCR using gene specific primers using high fidelity Taq DNA polymerase. Amplified DNA was cloned in to mammalian expression vector pcDNA 3.1. The authenticity of the cloned genes was determined by restriction analysis and nucleotide sequencing.
Total RNA from recombinant or control CHO cells were isolated using TRI reagent (Sigma) as recommended. The quality of each RNA sample was analyzed by agarose gel electrophoresis. Total RNA from each cell line was used in the cDNA synthesis by reverse transcription using Superscript Reverse Transcriptase and gene specific reverse primers for 5-HT2A, Alpha1b, H1 and β-actin genes. PCR was performed on each cDNA sample using gene specific forward and reverse primers. Samples were separated on 1% agarose gel and visualized after Ethidium bromide staining.
As evident from
Each recombinant CHO cell line was plated in 96 well white with clear bottom plates. The ligands as indicated were added to a final concentration of 10 μM. The luciferase activity was measured in individual wells using luciferin substrate in Perkin Elmer luminometer. The basal luciferase activity for each cell line was assigned an arbitrary value of 1. Fold stimulation with each ligand was determined in relation to the basal luciferase activity.
The assay was also utilized to investigate the specificity of various ligands and authenticity of the generated cell lines in this assay. As evident from
To further confirm the single dose effect of specific agonists on the recombinant CHO cell lines, a dose response effect with different agonists was measured. Each recombinant cell line was treated with individual agonists from 0.1 nM to 10,000 nM and luciferase activity was measured by using luciferin substrate in Victor Light Luminometer from Perkin Elmer. The agonist stimulated luciferase activity in the absence of a compound was assigned a value of 100% while basal luciferase activity was assigned a value of 0%. Rest of the luminescent values obtained for compounds at various doses were calculated with reference to stimulated and basal luciferase activities. Data was analyzed using Graphpad software.
Serotonin showed a specific dose response effect on the expression of luciferase activity in CHO-5HT2A cells (
CHO-α1b cells showed a robust dose response with increasing concentrations of epinephrine from 0.1 to 10000 nM as evident from the level of luciferase activity observed (
Following on the same pattern, CHO-H1 cells were treated with increasing concentrations (1 to 100,000 nM) of histamine. A dose proportionate increase in luciferase activity was observed in CHO-H1 cells treated with histamine but not with serotonin or epinephrine. Histamine showed a pEC50 value of 6.0 in this assay. Moniri et. al. reported a pEC50 value of 5.8 in a cAMP accumulation assay in CHO cells expressing human histamine H1 receptor upon treatment with histamine (Moniri N H, Covington-Strachan D, Booth R G: Ligand-directed functional heterogeneity of histamine H1 receptors: novel dual function ligands selectively activate and block H1-mediated phospholipase C and adenylyl cyclase signaling. J Pharmacol Exp Ther 2004; 311: 274-281) Overall, the values reported in the present assay are well in agreement with the published values generated using different strategies for three receptors under investigation.
Once we observed an induction of reporter gene activity in all recombinant cell lines evaluated in a agonist and dose dependent manner, it was of interest to determine whether the activity was blocked by various known antagonists. A number of compounds already demonstrated to antagonize some or all of the receptors under investigation were selected for the current study. Vehicle or selected compounds (10 μM concentrations) were incubated along with 10 μM of specific agonist with the cells and luciferase activity was measured by Victor Light Luminometer from Perkin Elmer. A detailed evaluation of various compounds in specific cell lines is presented in
Ketanserin, mianserin, olanzapine, clozapine and chlorpromazine (each at 10 μM concentrations) fully antagonized the serotonin induced and 5-HT2A mediated induction of luciferase activity in CHO-5HT2A cells. While haloperidol exhibited a limited antagonism, cetirizine did not show any impact on serotonin induced luciferase activity in CHO-5HT2A cells. Risperidone demonstrated an inverse agonism on 5-HT2A receptor and brought down the luciferase activity to less than vehicle control. A treatment of CHO-5HT2A cells with increasing concentrations of serotonin (0.1 to 10,000 nM) in the presence of 0, 10, 100 and 1000 nM ketanserin resulted in a significant right shift in the graph (
The effect of same set of compounds, tested in CHO-5HT2A cells, was investigated in CHO-α1b cells. Haloperidol, clozapine, chlorpromazine and risperidone (at a concentration of 10 μM) completely blocked the epinephrine induced luciferase activity in the recombinant cells (
CHO-H1 cells were evaluated for the blockade of histamine induced luciferase activity by a defined set of compounds. As evident from
The assay apart from demonstrating various mode of action of a compound to GPCRs can also be utilized to characterize orthosteric or allosteric mode of action of a compound. Furthermore, the reporter gene based functional assay can identify whether a compound interacts with the receptor in a reversible or irreversible manner.
Once the reporter gene assay was established and detailed pIC50 and pKb values were determined for a number of compounds, it was of interest to measure their binding affinity for the same set of receptors. Although the binding parameters for majority of these compounds are already reported, it was important to evaluate them in parallel with the reporter gene based functional assays.
Radioligand binding and competition assays were performed with membranes prepared from the recombinant CHO cell lines as described in following three references:
All the assays were converted to scintillation proximity assay (SPA) based format. For competition binding assays, 0.1 to 10,000 nM of each compound was incubated with a fixed concentration of the specific radioligands, membrane and SPA beads. For adrenergic alpha1b receptor, 4.0 nM of Prazosin [7-methoxy-3H] was incubated with recombinant membrane and Polylysine (PLL) coated Yitrium silicate (Ysi) SPA beads for three hours at ambient temperature. For, histamine HI binding assay, 1 nM of Pyrilamine [pyridinyl 5-3H] was incubated with the membrane and Wheat Germ Agglutinin (WGA) coated Polyvinyl Toluene (Pvt) SPA beads for two hours at the ambient temperature. For 5-HT2A binding assay, 3.1 nM Ketanserin Hydrochloride [ethylene-3H] was incubated with the membrane and WGA coated Ysi SPA beads in dark for four hours. After incubation was over, radioactivity was measured in MICROBETA® plate reader (Perkin Elmer). Total binding was determined in the absence of any ligands whereas non-specific binding was determined to be counts obtained in the presence of excess amount of specific ligands. Specific activity was calculated from the differences between total and non-specific counts.
Radioligand binding assay using SPA beads were performed to determine the pKi values for specific compounds. The binding experiment was performed thrice and average values are presented in Table 3. As evident, all the compounds showed a pKi value which well correlates with the already reported values. These compounds also demonstrated target selectivity as reported earlier (www.iuphar-db.org/GPCR/ReceptorFamiliesForward). Serotonin exhibited a pKi value of 6.8 to 5-HT2A receptor but did not show any binding to alpha1b and H1 receptors. Similarly, epinephrine showed strong binding to alpha 1b receptor with a pKa value of 6.4 but a weak affinity for 5-HT2A and no binding to H1 receptors. The pKi value determined is well in agreement with the published value. Histamine did not show any binding to either 5-HT2A or alpha1b receptors while giving a pKi value of 5.9 with H1 receptor which is again well in agreement with previously reported values. Ceterizine demonstrated a selective binding to human H1 receptor with a pKb value of 7.7 and no affinity to 5-HT2A or H1 receptors. Clozapine, mianserin, ketanserin and olanzapine showed varying degree of binding to all the above receptors (Table 3).
pKi and pKb are derived parameters from pIC50 value which are determined by binding assays and functional assays respectively. As the pIC50 value for the same ligand and receptor combination may vary depending on the amount of radioligand used in the binding assay or amount of agonist used in the functional assay, derived pKi and pKb values demonstrate a constant parameter for a specific compound. Thus, we compared the pKi and pKb values for specific compounds derived from radioligand binding assay or cell based function assay. For an agonist, pEC50 value derived from the functional assay is compared with the pKi value determined from the binding assay. As evident from Table 4, majority of the compounds showed a good correlation between pKb or pEC50 values derived from the functional assay and pKi values generated from the radioligand binding assay.
Number | Date | Country | Kind |
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3194/CHE/2009 | Dec 2009 | IN | national |
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/IN2010/000209 | 3/31/2010 | WO | 00 | 8/20/2012 |
Publishing Document | Publishing Date | Country | Kind |
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WO2011/080750 | 7/7/2011 | WO | A |
Number | Date | Country |
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0034783 | Jun 2000 | WO |
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Number | Date | Country | |
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20120315657 A1 | Dec 2012 | US |