Patent Application
20160229896
The present invention relates generally to fusion proteins and immunology.
Molecular biology has enabled the production of subunit vaccines, in which the immunogen is a fragment or a subunit of a parent protein or complex. The development of a stable vaccine that could elicit T cell sensitizing responses, and be flexible enough to incorporate sequences from many strains of an infectious agent would be desirable.
In one aspect, the invention relates to a fusion protein comprising:
In one embodiment of the invention, the APC-binding domain or the CD91 receptor-binding domain is a polypeptide comprising an amino acid sequence that is at least 90% identical to the sequence selected from the group consisting of SEQ ID NOs: 1 and 8-11.
In another embodiment of the invention, the nuclear export signal comprises the amino acid sequence of SEQ ID NO: 14.
In another embodiment of the invention, the endoplasmic reticulum retention sequence comprises the amino acid sequence of SEQ ID NO: 15.
In another embodiment of the invention, the nuclear export signal is located between the translocation peptide and the antigen.
In another embodiment of the invention, the nuclear export signal is located between the antigen and the endoplasmic reticulum retention sequence.
In another embodiment of the invention, the nuclear export signal and the ER retention sequence forms a fusion peptide comprising an amino acid sequence that is at least 90% identical to SEQ ID NO: 12.
In another embodiment of the invention, the translocation peptide has 34-61 amino acid residues in length.
In another embodiment of the invention, the translocation peptide has 34-46 amino acid residues in length.
In another embodiment of the invention, the APC-binding domain or the CD91 receptor-binding domain is free of the amino acid sequence of Pseudomonas exotoxin A (PE) binding domain 1.
In another embodiment of the invention, the APC-binding domain or the CD91 receptor-binding domain comprises the amino acid sequence of SEQ ID NO: 8.
In another embodiment of the invention, the amino acid sequence of the APC-binding domain or the CD91 receptor-binding domain is SEQ ID NO: 1.
In another embodiment of the invention, the antigen is a fusion antigen of two or more antigenic peptides from a pathogen.
In another embodiment of the invention, the ER retention sequence has more than 4 amino acid residues in length.
In another embodiment of the invention, the translocation peptide comprises an amino acid sequence that is at least 95% identical to SEQ ID NO: 4, 2, 3, or 6.
In another embodiment of the invention, the APC-binding domain or the CD91 receptor-binding domain exhibits a characteristics of recognizing and binding to a receptor on an antigen-presenting cell (APC) selected from the group consisting of dendritic cells, monocytes. B-cells and lymphocytes.
In another embodiment of the invention, the pathogen is selected from the group consisting of PRRSV, PCV, FMDV, CSFV, NDV, Transmissible gastroenteritis virus (TGEV), Porcine epidemic diarrhea virus (PEDV), Influenza virus, Pseudorabies virus, Parvovirus, Pseudorabies virus, Swine vesicular disease virus (SVDV), Poxvirus, Rotavirus, Mycoplasma pneumonia, Herpes virus, Infectious bronchitis, and Infectious bursal disease virus.
In another aspect, the invention consists essentially of, or consisting of:
Further in another aspect, the invention relates to a vaccine composition comprising the fusion protein as aforementioned and an adjuvant.
Yet in another aspect, the invention relates to a method for inducing enhanced pathogen antigen-specific T cell responses, comprising: administering a vaccine composition comprising a therapeutically effective amount of the fusion protein of the invention to a subject in need thereof, and thereby inducing enhanced pathogen antigen-specific T cell responses.
The present invention is more particularly described in the following examples that are intended as illustrative only since numerous modifications and variations therein will be apparent to those skilled in the art. Various embodiments of the invention are now described in detail. Referring to the drawings, like numbers indicate like components throughout the views. As used in the description herein and throughout the claims that follow, the meaning of “a”, “an”, and “the” includes plural reference unless the context clearly dictates otherwise. Also, as used in the description herein and throughout the claims that follow, the meaning of “in” includes “in” and “on” unless the context clearly dictates otherwise. Moreover, titles or subtitles may be used in the specification for the convenience of a reader, which shall have no influence on the scope of the present invention. Additionally, some terms used in this specification are more specifically defined below.
The terms used in this specification generally have their ordinary meanings in the art, within the context of the invention, and in the specific context where each term is used. Certain terms that are used to describe the invention are discussed below, or elsewhere in the specification, to provide additional guidance to the practitioner regarding the description of the invention. For convenience, certain terms may be highlighted, for example using italics and/or quotation marks. The use of highlighting has no influence on the scope and meaning of a term; the scope and meaning of a term is the same, in the same context, whether or not it is highlighted. It will be appreciated that same thing can be said in more than one way. Consequently, alternative language and synonyms may be used for any one or more of the terms discussed herein, nor is any special significance to be placed upon whether or not a term is elaborated or discussed herein. Synonyms for certain terms are provided. A recital of one or more synonyms does not exclude the use of other synonyms. The use of examples anywhere in this specification including examples of any terms discussed herein is illustrative only, and in no way limits the scope and meaning of the invention or of any exemplified term. Likewise, the invention is not limited to various embodiments given in this specification.
Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention pertains. In the case of conflict, the present document, including definitions will control.
The term “an antigen-presenting cell (APC) or accessory cell” refers to a cell that displays foreign antigens complexed with major histocompatibility complexes (MHC's) on their surfaces. T-cells may recognize these complexes using their T-cell receptors (TCRs). These cells process antigens and present them to T-cells. Main types of professional antigen-presenting cell are dendritic cells (DCs), macrophages, which are also CD4+ and are therefore also susceptible to infection by HIV; monocytes, and certain B-cells.
The term “an antigen-presenting cell (APC)-binding domain” refers to a domain (which is a polypeptide) that can bind to an antigen-presenting cell (APC). The APC-binding domain may be a polypeptide comprising an amino acid sequence that is at least 90% identical to the sequence selected from the group consisting of SEQ ID NOs: 1 and 8-11. An APC-binding domain is a ligand that recognizes and binds to a receptor on APC.
Cluster of differentiation 91 (CD91) is a protein that forms a receptor in the membrane of cells and is involved in receptor-mediated endocytosis.
The term “PEt” refers to a translocation peptide (or a translocation domain) with 34-112 amino acid residues in length. PEt may comprises the amino acid sequence that is at least 90% identical to SEQ ID NO: 2-4 and 6. For example, the amino acid sequence of PEt may be a fragment of a.a. 280-a.a. 313 (SEQ ID NO: 4), a.a. 268-a.a. 313 (SEQ ID NO: 3), a.a. 253-a.a. 313 (SEQ ID NO: 2), or a.a. 253-a.a. 364 (SEQ ID NO: 6) of PE. That is, the amino acid sequence of PEt may contain any region of the PE domain 11 (a.a. 253 to a.a. 364; SEQ ID NO: 6) as long as it comprises a.a. 280-aa. 313 (SEQ ID NO: 4) essential sequence (i.e., the essential fragment).
The PE407 (SEQ ID NO. 7) is described in prior patent (U.S. Pat. No. 7,335,361 B2) as PE(ΔIII).
The term “minimum translocation peptide” refers to PE253-313 (SEQ ID NO. 2), which can translocate an antigen into the cytoplasm of a target cell.
The term “an endoplasmic reticulum (ER) retention sequence” refers to a peptide whose function is to assist translocation of an antigen from the cytoplasm into ER and retains the antigen in the lumen of the ER. An ER retention sequence comprises the sequence of Lys Asp Glu Leu (KDEL; SEQ ID NO: 15) or RDEL. An ER retention sequence may comprise the sequence KDEL, RDEL, KDELKDELKDEL (K3; SEQ ID NO: 16), KKDLRDELKDEL (K3; SEQ ID NO: 17), KKDELRDELKDEL (K3; SEQ ID NO: 18), or KKDELRVELKDEL (K3; SEQ ID NO: 19).
A nuclear export signal (NES) refers to a short amino acid sequence of 4 hydrophobic residues in a protein that targets it for export from the cell nucleus to the cytoplasm through the nuclear pore complex using nuclear transport. The NES is recognized and bound by exportins. The most common spacing of the hydrophobic residues to be LxxKLxxLxLx (SEQ ID NO. 13), where “L” is leucine, “K” is lysine and “x” is any naturally occurring amino acid. For example, an artificial NES may comprise the sequence Leu Gln Lys Lys Leu Glu Glu Leu Glu Leu Ala (LQKKLEELELA; SEQ ID NO: 14).
The term “NESK” refers to a fusion peptide of a NES and an ER retention signal (i.e., a NES fused to an ER retention signal). It is an artificial peptide possessing the function of a nuclear export signal (NES) and an ER retention sequence. Thus, it can export an antigen from the cell nucleus to the cytoplasm through the nuclear pore complex, and assist translocation of an antigen from the cytoplasm to ER and retain the antigen in the lumen of the ER. For example, the amino acid sequence of NESK may be LQKKLEELELAKDEL (SEQ ID NO: 12).
An antigen may be a pathogenic protein, polypeptide or peptide that is responsible for a disease caused by the pathogen, or is capable of inducing an immunological response in a host infected by the pathogen, or tumor-associated antigen (TAA) which is a polypeptide specifically expressed in tumor cells. The antigen may be selected from a pathogen or cancer cells including, but not limited to, Human Papillomavirus (HPV), Porcine reproductive and respiratory syndrome virus (PRRSV), Human immunodeficiency virus-1 (HIV-1), Dengue virus, Hepatitis C virus (HCV), Hepatitis B virus (HBV), Porcine Circovirus 2 (PCV2), classical Swine Fever Virus (CSFV), Foot-and-mouth disease virus (FMDV), Newcastle disease virus (NDV), transmissible gastroenteritis virus (TGEV), Porcine epidemic diarrhea virus (PEDV). Influenza virus, pseudorabies virus, Parvovirus, Pseudorabies virus, Swine vesicular disease virus (SVDV), Poxvirus, Rotavirus, Mycoplasma pneumonia, Herpes virus, infectious bronchitis, or infectious bursal disease virus, non-small cell lung cancer, breast carcinoma, melanoma, lymphomas, colon carcinoma, hepatocellular carcinoma and any combination thereof. For example, HPV E7 protein (E7), HCV core protein (HCV core), HBV X protein (HBx) were selected as antigens for vaccine development. The antigen may be a fusion antigen from a fusion of two or more antigens selected from one or more pathogenic proteins. For example, a fusion antigen of PRRSV ORF6 and ORF5 fragments, or a fusion of antigenic proteins from PRRSV and PCV2 pathogens.
The term “treating” or “treatment” refers to administration of an effective amount of the fusion protein to a subject in need thereof, who has cancer or infection, or a symptom or predisposition toward such a disease, with the purpose of cure, alleviate, relieve, remedy, ameliorate, or prevent the disease, the symptoms of it, or the predisposition towards it. Such a subject can be identified by a health care professional based on results from any suitable diagnostic method.
The term “an effective amount” refers to the amount of an active compound that is required to confer a therapeutic effect on the treated subject. Effective doses will vary, as recognized by those skilled in the art, depending on rout of administration, excipient usage, and the possibility of co-usage with other therapeutic treatment.
The invention relates to fusion proteins for enhancing antigen delivery and modulating cell-mediated immune response. The fusion protein comprises: (a) an antigen-presenting cell (APC)-binding domain or a CD91 receptor-binding domain, located at the N-terminus of the fusion protein; (b) a translocation peptide of 34-112 amino acid residues in length, comprising an amino acid sequence that is at least 90% identical to SEQ ID NO: 2-4 and 6 and located at the C-terminus of the APC-binding domain or the CD91 receptor-binding domain; and (c) an antigen of a pathogen, located at the C-terminus of the translocation peptide; (d) a nuclear export signal (NES); and (e) an endoplasmic reticulum (ER) retention sequence, the ER retention sequence being located at the C-terminus of the fusion protein, wherein the NES comprises the amino acid sequence of SEQ ID NO: 13.
Using the fusion protein PE313-ORF2-NESK as an example, the strategy is that the fusion protein of the invention stimulates the production and activation of T cells that can recognize the antigen Porcine Circovirus Type 2 (PCV2) capsid protein ORF2. The fusion protein comprises, from N-terminus to C-terminus, a PE domain I (APC-binding domain), a translocation peptide of 34-112 amino acid residues in length (e.g., a.a. 253-313 of the PE domain II), a truncated PCV2 ORF2 protein (N-terminal nuclear localization signal removed), a NES signal and an ER retention sequence (KDEL). The underlying mechanisms of eliciting enhanced ORF2-specific T cell immune responses by PE313-ORF2-NESK involve the following steps: a) binding to dendritic cell (or antigen-presenting cell) surface receptor (CD91); b) internalization by endocytosis; c) transporting to the ER and proteolytic hydrolysis by furin in front of the translocation peptide; d) processing and presenting by MHC I complex; and e) activating antigen-specific CD4+ and CD8+ T cells. CD4+ Th1 cells are able to efficiently stimulate and enhance cytotoxic CD8+ T cell immune response. Together, these two arms of the adaptive immune system have the specificity and potency to kill PCV2 and PCV2-infected cells.
The fusion protein PE313-ORF2-NESK here is distinguishable from the fusion protein vaccine PE407-Ag-K3 disclosed by Lai in U.S. Pat. No. 7,335,361 in several aspects. Firstly, the length of PE313 (SEQ ID NO: 5) is 94 amino acid residues shorter than PE407 (SEQ ID NO: 7), the advantage of which is that unwanted humoral response elicited by the presence of an extra fragment of PE is minimized or eliminated. Secondly, the ER retention sequence is shortened. Instead of K3 (that is, 3 of KDER), only one KDER or RDER is needed. Thirdly, only cytosolic antigen can be processed and presented by MHC type I pathway, so the addition of a NES signal into the fusion protein is beneficial to enhance pathogen antigen-specific T cell responses because increasing the opportunity of translocation of antigen into cytosol. Antigens of a pathogen may be imported into the cell nucleus. By incorporating a NES signal, the antigen imported into the cell nucleus can be exported to the cytoplasm by the NES signal of the fusion protein.
Without intent to limit the scope of the invention, exemplary instruments, apparatus, methods and their related results according to the embodiments of the present invention are given below. Note that titles or subtitles may be used in the examples for convenience of a reader, which in no way should limit the scope of the invention. Moreover, certain theories are proposed and disclosed herein; however, in no way they, whether they are right or wrong, should limit the scope of the invention so long as the invention is practiced according to the invention without regard for any particular theory or scheme of action.
A target DNA encoding an antigen or a fusion antigen of a pathogen of interest may then be inserted into the aforementioned plasmids to generate an expression vector for expression of a fusion protein. For example, DNA fragments encoding antigens of Porcine Circovirus Type 2 (PCV2) ORF2 (SEQ ID NO: 20), Classical Swine Fever Virus (CSFV) E2 (SEQ ID NO: 21), Foot-and-mouth disease virus (FMDV) VP1-3A (SEQ ID NO: 24) and Newcastle disease virus (NDV) FUN (SEQ ID NO: 27) were synthesized and inserted into the plasmids pTac-2-PE313-NESK and pTac-2-PE407-K3, respectively, to generate the following expression vectors: (1) PE313-ORF2-NESK; (2) PE407-ORF2-K3; (3) PE313-E2-NESK; (4) PE407-E2-K3; (5) PE313-VP1-3A-NESK; (6) PE407-VP1-3A-K3; (7) PE313-FHN-NESK; and (8) PE407-FHN-K3. DNA fragments encoding antigen of Human Papillomavirus Type 16 E7 (SEQ ID NO: 28) were synthesized and inserted into the plasmids pTac-2-PE407-K3, pTac-2-RAP1-PE238-313-NESK and pTac-2-RAP1-PE268-313-K3, respectively, to generate the following expression vectors: (9) PE407-E7-K3, (10) RAP1-PE268-313-E7-NESK and (11) RAP1-PE268-313-E7-K3.
E. coli BL21 cells harboring plasmids for expression of fusion proteins (1) PE313-ORF2-NESK; (2) PE407-ORF2-K3; (3) PE313-E2-NESK; (4) PE407-E2-K3; (5) PE313-VP1-3A-NESK; (6) PE407-VP1-3A-K3; (7) PE313-FHN-NESK; (8) PE407-FHN-K3; (9) PE407-E7-K3; (10) RAP1-PE268-313-E7-NESK and (11) RAP1-PE268-313-E7-K3 were respectively cultured in Luria Bertani broth containing 25 ppm of kanamycin at 37° C. When the culture reaching early log phase, (A600=0.1 to 0.4), isopropyl-1-thio-β-D-galactopyranoside (IPTG) was added with a final concentration of 0.5 to 2 mM for induction. Cells were harvested after induction after 4 hours and immediately stored at −70° C. The fusion proteins were purified by urea extraction as described previously (Liao et al., 1995. Appl. Microbiol. Biotechnol. 43: 498-507) and then were refolded by dialysis method against 50× volume of TNE buffer (50 mM Tris. 50 mM NaCl and 1 mM EDTA) at 4° C. for overnight. The refolded proteins were subjected to SDS-PAGE analyses and quantitative analyses performed using Bradford Protein Assay Kit (Pierce). The results indicated that most of the refolded proteins were monomers under a non-reduced condition, indicating that the fusion proteins refolded easily and were not aggregated.
Mice were vaccinated with 0.1 ml PCV2 subunit vaccine containing 40 μg of PE313-ORF2-NESK or PE407-ORF2-K3 with aluminum phosphate (a protein absorbent for slow release of the fusion protein; 10% v/v) and 10 μg of saponin (an adjuvant extracted from Quillaja saponaria) via s.c. injection once a week for 3 weeks. The control group (placebo) was injected with adjuvant only without the fusion protein. All mice were sacrificed 14 days after the last immunization, and the spleens were harvested. The splenocytes were isolated and cultured in 6-well plate (108 cells/2 ml/well) with or without the recombinant ORF2 protein in the presence of 1 μg/ml GolgiPlug (BD Pharmingen. San Diego, Calif.) at 37° C. for 16 hr. The stimulated splenocytes were then washed with FACScan buffer and stained with phycoerythrin-conjugated monoclonal rat anti-mouse CD8a and AF700-conjugated monoclonal rat anti-mouse CD4 antibodies. Cells were intracellular cytokine stained using the Cytofix/Cytoperm kit according to the manufacturer's instructions (BD Pharmingen). Intracellular IFN-γ was stained with AF488-conjugated rat anti-mouse IFN-γ to measure the immune response and cytokine levels. Flow cytometry analyses were performed using Gallios flow cytometry with Kaluza analysis software (Beckman Coulter).
Using the same immunization schedule and dosage, mice were vaccinated with CSFV subunit vaccines containing PE313-E2-NESK or PE407-E2-K3, and splenocytes isolated, cultured and assayed by a flow cytometry method as described above, except that the recombinant E2 protein was added to stimulate the splenocytes in the culture.
Using the same immunization schedule and dosage, mice were vaccinated with FMDV subunit vaccines containing PE313-VP1-3A-NESK or PE407-VP1-3A-K3, and splenocytes isolated, cultured and assayed by a flow cytometry method as described above, except that the recombinant VP1-3A protein was added to stimulate the splenocytes in the culture.
Using the same immunization schedule and dosage, mice were vaccinated with FMDV subunit vaccines containing PE313-FHN-NESK or PE407-FHN-K3, and splenocytes isolated, cultured and assayed by a flow cytometry method as described above, except that the recombinant FHN protein was added to stimulate the splenocytes in the culture.
The fusion proteins PE407-K3, RAP1-PE268-313-E7-K3 and RAP1-PE268-313-E7-NESK were expressed and refolded using similar methods as described above. Mice were challenged with 2×103 TC-01 cells (mouse lung epithelia cell harboring HPV type 16 E7 gene) via s.c. injection to induce HPV-16 type carcinoma. Twelve days after the TC-01 cell challenge, mice were vaccinated via s.c. with placebo (PBS), PE407-K3 (100 mg/dose), RAP1-PE268-313-E7-K3 (100 μg/dose) or RAP1-PE268-313-E7-NESK (100 μg/dose) with AS04C (GlaxoSmithKline) as an adjuvant once per week for 3 weeks (
The following fusion proteins are generated: PE313-NES-antigen-K, PE1-252-PE268-313-NES-antigen-K, PE1-252-PE280-313-NES-antigen-K. In addition, the fragment of PE domain Ia (PE1-252) of the fusion protein PE313-antigen-NESK is replaced by RAP1 domain 3 (SEQ ID NO: 8), A2M minimum (SEQ ID NO: 9), HIV-Tat minimum (SEQ ID NO: 10) or HSPs minimum (SEQ ID NO: 11) to generate the fusion proteins RAP1 domain 3-PE253-313-antigen-NESK. A2M-PE253-313-antigen-NESK, Tat-PE253-313-antigen-NESK and HSP-PE253-313-antigen-NESK, RAP1 domain 3-PE268-313-antigen-NESK, A2M-PE268-313-antigen-NESK, Tat-PE268-313-antigen-NESK and HSP-PE268-313-antigen-NESK vaccines, RAP1 domain 3-PE280-313-antigen-NESK, A2M-PE280-313-antigen-NESK, Tat-PE280-313-antigen-NESK and HSP-PE280-313-antigen-NESK, respectively. RAP1 domain 3-PE253-313-NES-antigen-K, A2M-PE253-313-NES-antigen-K, Tat-PE253-313-NES-antigen-K and HSP-PE253-313-NES-antigen-K, RAP1 domain 3-PE268-313-NES-antigen-K, A2M-PE268-313-NES-antigen-K, Tat-PE238-313-NES-antigen-K and HSP-PE268-313-NES-antigen-K vaccines, RAP1 domain 3-PE280-313-NES-antigen-K, A2M-PE280-313-NES-antigen-K, Tat-PE280-313-NES-antigen-K and HSP-PE280-313-NES-antigen-K. The cell mediated immune responses enhanced by these vaccines are examined using similar methods as described above.
Table 1 shows SEQ ID NOs. of peptides used for making various fusion proteins.
In summary, the results have proved that a fusion protein containing an APC-binding domain at the N-terminal end, a translocation domain, followed by an antigen of a pathogen, and then a fusion peptide of NESK at the carboxyl terminal end is an improved design over the PE-fusion protein that is without the fusion peptide of NESK at the carboxyl terminus in terms of enhancing cell-mediated immune response, suppressing tumor growth, and/or increasing the percentage of tumor-free animals.
While embodiments of the present invention have been illustrated and described, various modifications and improvements can be made by persons skilled in the art. It is intended that the present invention is not limited to the particular forms as illustrated, and that all the modifications not departing from the spirit and scope of the present invention are within the scope as defined in the appended claims.
The embodiments and examples were chosen and described in order to explain the principles of the invention and their practical application so as to enable others skilled in the art to utilize the invention and various embodiments and with various modifications as are suited to the particular use contemplated. Alternative embodiments will become apparent to those skilled in the art to which the present invention pertains without departing from its spirit and scope. Accordingly, the scope of the present invention is defined by the appended claims rather than the foregoing description and the exemplary embodiments described therein.
Some references, which may include patents, patent applications and various publications, are cited and discussed in the description of this invention. The citation and/or discussion of such references is provided merely to clarify the description of the present invention and is not an admission that any such reference is “prior art” to the invention described herein. All references cited and discussed in this specification are incorporated herein by reference in their entireties and to the same extent as if each reference was individually incorporated by reference.
This application is a continuation of and claims priority to U.S. Ser. No. 14/095,947, filed Dec. 3, 2013, which status is pending and claims priority to U.S. Provisional Application Ser. No. 61/733,879, filed Dec. 5, 2012, all of which are herein incorporated by reference in their entireties.
| Number | Date | Country | |
|---|---|---|---|
| 61733879 | Dec 2012 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 14095947 | Dec 2013 | US |
| Child | 15098210 | US |
