Yuan et al., “Towards detection of orthologues in sequence databases,” Bioinformatics, 1998, vol. 14, No. 3, pp. 285-289.* |
Sonnhammer et al., “Pfam: A comprehensive database of protein domain families based on seed alignments,” Protein Structure Function and Genetics, 1997, vol. 28, No. 3, pp. 405-420.* |
Pearson, “Identifying distantly related protein sequences,” CABIOS, 1997, vol. 13, No. 4, pp. 325-332.* |
Grundy et al., “Meta-MEME: Motif-based hidden Markov models of protein families,” CABIOS, 1997, vol. 13, No. 4, pp. 397-406.* |
Ballinger CA et al., 1999, Mol. Cell. Biol. 19:4535-4545. |
Barabasi and Albert, 1999, Science 286:509-512. |
Enright AJ et al., 1999, Nature 402:86-90. |
Marcotte EM et al., 1999, Science 285:751-753. |
Ruecknagel KP et al., 1999, Dihydrolipoamide S-Succinyltransferase Precursor, Accession XUBYSD (gi|2144399). |
Bailey et al., 1998, Genome Research 8:362-376. |
Bono et al., 1998, Genome Res. 8:203-210. |
Friedman C et al., 1998, Methods of Information Medicine 37: 334-44. |
Goto S. et al., 1998, Nucleic Acid Research 14:591-599. |
Grundy, 1998, J. Computational Biology 5: 479-491. |
Hu et al., 1998, J. Biol. Chem. 273:33489-33494. |
Sonnhammer ELL et al., 1998, Nucleic Acids Research 26 (1):320-322. |
Wu SK et al., 1998, J. Biol. Chem. 273:26931-26938. |
Altschul et al., 1997, Nucleic Acids Research 25:3389-3402. |
Attwood TK et al., 1997, J. Chem. Inf. Comput. Sci 37:417-424. |
Cserzo M et al., 1997, Protein Engineering 10: 673-676. |
Goto et al., 1997, Pac. Symp. Biocomput. 2:175-186. |
Grundy et al., 1997, Biochem Biophys. Res. Commun. 231(3):760-766. |
Grundy et al., 1997, CABIOS 13:397-406. |
Mushegian AR et al., 1997, Proc. Natl., Acad Sci USA 94:5831-5836. |
Neuwald, 1997, Nucleic Acids Research 25:1665-1677. |
Rogers MA et al., 1997, Differentiation 61:187-194. |
Selkov E et al., 1997 Nucleic Acids Research 25:37-38. |
Sharket et al., 1997, TIG 13:145-151. |
Skvorak AB et al., 1997, Genomics 46:191-199. |
Tatusov RI et al., 1997, Science 278;631-637. |
Boskovic J et al., 1996, Transcription Factor GRF10, Accession A25872 (gi|82888). |
Felsenstein J et al., 1996, Methods in Enzymology 266:418-427. |
Gustsfsson C et al., 1996, Nucleic Acids Research 24:3756-3762. |
Jain NL et al., 1996, Proc. AMIA Annu Fall Symp. pp. 542-546. |
James CM et al., 1996, Cell Division Control Protein CDC43, Accession RGBY43 (gi|2144611). |
Koonin EV et al., 1996, Methods in Enzymology 266:295-323. |
Mathews S et al., 1996, Mol. Biol. Evol. 13:1141-1150. |
Miklos GLG et al., 1996, Cell 86:521-529. |
Selkov et al., 1996, Nucleic Acids Research 24:26-28. |
Wu CH et al., 1996, Comput. Appl. Biosci 12:109-118. |
Bailey et al., 1996, Proc Int Conf Intell Syst Mol Biol. 3: 21-29. |
Green PJ, 1995, Biometrika 82:711-732. |
Hripcsak G. et al., 1995, Ann. Intern Med. 122:681-688. |
Neuwald AF et al., 1995, Protein Sci. 4:1618-1632. |
Purnelle B et al., 1995, Pre-mRNA Splicing Factor PRP21, Accession S 23553 (gi|280467). |
Yang Z et al., 1995, Syst. Biol. 44:384-399. |
Churcher C, 1994, Dihydrolipoamide Dehydrogenase Precursor, Accession A 30151 (gi|82983). |
Contreras R et al., 1994, Hypothetical Protein YBL067C, Accession S45803 (gi|626480). |
Entian KD et al., 1994, Omnipotent Suppressor Protein SUP45, Accession S46014 (gi|626763). |
Gaillon L et al., 1994, Transcription Factor BASI, Accession A 40083 (gi|101447). |
Hamlyn N et al., 1994, Oxoglutarate Dehydrogenase Precursor, Accession DEBY (gi|1070439). |
Kazic 1994, In: Molecular Modeling:From Virtual Tools to Real problems, Kumosinski, T. and Liebman, M.N. (Eds.), American Chemical Society, Washington, D.C. pp. 486-494. |
Kazic, 1994, In: New Data Challenges in Our Information Age Glaesar, P.S. and Millward, M.T.L (Eds.). Proceedings of the Thirteenth International CODATA Secretariat, Paris pp. C133-C140. |
Krogh et al., 1994, J. Mol. Biol. 235:1501-1531. |
Murphy L et al., 1994, Suppressor 2 Protein, Accession EFBY52 (gi|72877). |
Rieger M, 1994, Protein Farnesyltransferase Chain RAM2, Accession P29703 (gi|266880). |
Tatusov RL et al., 1994, Proc. Natl Acad. Sci. USA 91:12091-12095. |
Orengo et al., 1993, J Mol Biol 233(3):488-497. |
Ullrich O et al., 1993, J. Biol. Chem. 268:18143-18150. |
Peitgen HO, Juregens H, Saupe D, 1992, Chaos and Fractals: New Frontiers of Science, Springer Verlag, New York. |
Altschul et al., 1990, J. Mol. Biol. 215:403-410. |
Goldman N 1990, Syst. Zoo. 39:345-361. |
Karlin S et al., 1990, Proc. Natl. Acad. Sci. USA 87:2264-2268. |
Pamilo P et al., 1988, Mol. Biol. Evol 5:568-583. |
Saitou N ,1987, Mol. Biol. Evol. 4:406-425. |
Fitch WM, 1974, J. Mol. Evol. 3:263-278. |
Felsenstein J, 1978, Syst. Zool., 27:401-410. |
Fitch WM, 1970, Syst. Zool., 19:99-113. |
Hastings, 1970, Biometrika 57:97-109. |