Heterocyclic compounds and uses as anticancer agents

FIELD OF THE INVENTION

The field of this invention is pharmaceutical compounds, compositions and methods, especially as they are related to compositions and methods for the treatment of tumors and related diseases related to the dysregulation of kinase (such as EGFR (including HER), Alk, PDGFR, but not limited to) pathways.

BACKGROUND OF THE INVENTION

Protein kinases are a group of enzymes that regulate diverse, important biological processes including cell growth, proliferation, survival, invasion and differentiation, organ formation, tissue repair and regeneration, etc. Protein kinases exert their physiological functions through catalyzing the phsophorylation of protein and thereby modulating the cellular activities. Because protein kinases have profound effects on cells, their activities are highly regulated. Kinases are turned on or off by phosphorylation (sometimes by autophosphorylation), by binding of activator proteins or inhibitor proteins, or small molecules, or by controlling their location in the cell relative to their substrates. Dysfunctions in the activities of kinases, arising from genetic abnormalities or environmental factors, are known to be associated with many diseases. Several severe pathological states, including cancer and chronic inflammation, are associated with stimulation of intra-cellular signaling, and since kinases positively relay signaling events, their inhibition offers a powerful way to inhibit or control signal transduction cascades.

The epidermal growth factor receptor (EGFR; ErbB-1; HER1 in humans) is a member of the ErbB family of receptors, a subfamily of four closely related receptor tyrosine kinases: EGFR (ErbB-1), HER2/c-neu (ErbB-2), Her 3 (ErbB-3) and Her 4 (ErbB-4). EGFR is the cell-surface receptor for members of the epidermal growth factor family (EGF-family) of extracellular protein ligands. Mutations affecting EGFR expression or activity could result in cancer. EGFR is reported deregulated in most solid tumor types i.e. lung cancer, breast cancer and brain tumor. It is estimated that mutations, amplifications or misregulations of EGFR or family members are implicated in about 30% of all epithelial cancers. Therapeutic approaches have been developed based on the inhibition of EGFR by either antibody drug or small molecular inhibitor drug, such as gefitinib and erlotinib. In the case of non small cell lung cancer, gefitinib and erlotinib have shown benefit for 10˜40% of the patients. However, acquired resistant to gefitinib or erlotinib after a period of treatment become a major clinical problem. Research has confirmed that one main reason resistance developed is due to the present of the new mutation of T790M, which is the gatekeeper of EGFR. Subsequently, inhibitors can overcome this T790M have been developed and showed advantage in the clinical trial, such as BIBW2992. However, these T790M targeted EGFR inhibitor still has relative inhibitory activity towards wild type EGFR which limit the clinical application. It is needed to further develop more efficient type of EGFR inhibitor which will target mutation only but not the wild type protein.

DISCLOSURE OF THE INVENTION

The present invention is directed to various classes of fused or unfused pyrimidine derivatives and other related/similar fused/unfused ring systems described herein, pharmaceutical compositions, and methods of using these compounds and compositions to treat cancers. In some embodiments, these compounds have been shown to possess anti-cancer activity in cell based assays as described herein using various cancer cell lines, which demonstrate very efficient EGFR inhibitory activity targeting mutation only but not the wild type protein. Accordingly, the compounds and compositions comprising the compounds of the invention are useful to treat conditions characterized by those mutated cancer cells. In particular, the compounds are useful to treat leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

The fused or unfused pyrimidine or similar heterocyclic moiety of the compounds described herein can be further fused with other aryl/non-aryl ring or substituted with substituted aryl amino, substituted arylthio, substituted aryloxy, substituted heterocyclic amino, substituted heterocyclic thio, and substituted heterocyclic oxy derivatives thereof. In some embodiments, the fused or unfused pyrimidine or similar heterocyclic moiety of the compounds described herein include pyrmidine, pyrrolopyrimidine, and purine. The compounds as described herein exhibit anti-tumor, anticancer, anti-inflammation, anti-infectious, and anti-proliferation activity. The present invention also relates to the methods of making and formulating the described compounds and methods to use them therapeutically and/or prophylacticly.

In one aspect, the contemplated heterocyclic compounds have a structure according to Formula I:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO2, C1-C6 alkyl, or C1-C6 haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

R¹and R²is independently selected from H, OH, Halo, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, and CR(COOR)₂;

Y is H, OH, Halo, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Z is H, OH, Halo, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

R¹⁰is halogen or C_rC₆alkyl; and

each R—¹¹is independently hydrogen, C_rC₃alkyl, C, —C₃alkoxy, C, —C₃haloalkyl, or C C₃haloalkoxy;

R¹²is CH₂or C(O);

X^2bis O, S, NH, or NR;

each R is selected from H, substituted or unsubstituted C_1-8alkyl, C_2-8alkenyl, C_2-8alkynyl, aryl, fused aryl, heteroaryl, fused heterocycle, a C_3-8carbocyclic ring or a C_3-8heterocyclic ring, saturated or unsaturated, wherein each C_1-8alkyl, C_3-8cyclic alkyl, C_2-8alkenyl, C_2-8alkynyl can optionally contain a heteroatom selected from N, O and S in place of a carbon atom;

or a pharmaceutically acceptable salt thereof.

In another aspect of these compounds, X is C1-C6 haloalkyl.

In some embodiments of these compounds, X is CF₂, CHF, CHCF₃or CHCF₃or C(CF₃)₂.

The present disclosure provides a compound of Formula Ia:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO₂, C₁-C₆alkyl or C₁-C₆haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

R¹and R²are each independently selected from H, C₁-C₆alkyl, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, SO₂R, PO₃R₂,—POR₂, CR(COOR)₂, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, —C(O)NR₂, sulfonyl, sulfonylamino, aminosulfonyl, acylamino, alkoxycarbonylamino, and aminocarbonylamino;

Y is H, OH, halogen, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

R⁹is hydrogen, C₁-C₆alkyl, or substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with halogen, hydroxy, cyano, nitro, sulfonyl, sulfonylamino, aminosulfonyl, amino, or substituted amino;

each R³⁰is independently selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, and substituted amino;

X^2bis O, S, NH, or NR;

Z is H, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

R⁴⁰and R⁴¹are independently selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino, acylamino, alkoxycarbonylamino, and aminocarbonylamino; and

each R is selected from H, substituted or unsubstituted C_1-8alkyl, C_2-20alkenyl, C_2-8alkynyl, aryl, fused aryl, heteroaryl, fused heterocycle, a C_3-8carbocyclic ring or a C_3-8heterocyclic ring, saturated or unsaturated, wherein each C_1-8alkyl, C_3-8cyclic alkyl, C_2-8alkenyl, C_2-8alkynyl can optionally contain a heteroatom selected from N, O and S in place of a carbon atom;

or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula Ib:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO₂, C₁-C₆alkyl or C₁-C₆haloalkyl; W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

Y is H, OH, halogen, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Z is H, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

X^2bis O, S, NH, or NR;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, X is C₁-C₆haloalkyl.

In some embodiments of these compounds, X is selected from CF₂, CHF, CHCF₃or C(CF₃)₂.

The present disclosure provides a compound of Formula Ic:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R^bis selected from H, substituted or unsubstituted C_1-8alkyl, C_2-8alkenyl, C_2-8alkynyl, aryl, fused aryl, heteroaryl, fused heterocycle, a C_3-8carbocyclic ring or a C_3-8heterocyclic ring, saturated or unsaturated, wherein each C_1-8alkyl, C_3-8cyclic alkyl, C_2-8alkenyl, C_2-8alkynyl can optionally contain a heteroatom selected from N, O and S in place of a carbon atom;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

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R²⁴and R²⁵are independently selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, and substituted amino;

R²⁴and R²⁵are independently selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a,—C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, and substituted amino;

R26 is hydrogen, C₁-C₆alkyl, or substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with halogen, hydroxy, cyano, nitro, sulfonyl, sulfonylamino, aminosulfonyl, amino, or substituted amino;

R²²is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, thiol, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino, acylamino, alkoxycarbonylamino, and aminocarbonylamino;

R²³is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino, acylamino, alkoxycarbonylamino, and aminocarbonylamino;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In another aspect, the contemplated compounds have a structure according to Formula II:

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where X is halo wherein the halo is Cl, F, I, or Br.

In some embodiments of these compounds, halo is F, I, or Br.

The present disclosure provides a compound of Formula IIa:

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where X is C₁-C₆alkyl, C₁-C₆alkoxy, or halo, wherein the halo is Cl, F, I, or Br.

In some embodiments of these compounds, halo is F, I, or Br.

The present disclosure provides a compound of Formula III:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

R²⁰and R²¹are independently selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, and substituted amino;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, R²⁰is hydrogen, halogen, C₁-C₆alkyl, or C₁-C₆alkoxy.

In some embodiments of these compounds, R²is hydrogen, fluoro, chloro, C₁-C₆alkyl, or C₁-C₆alkoxy.

In some embodiments of these compounds, R²⁰is hydrogen, fluoro, iodo, bromo, C₁-C₆alkyl, or C₁-C₆alkoxy.

In some embodiments of these compounds, R²¹is hydrogen.

In some embodiments of these compounds, R²³is hydrogen, halogen, or C₁-C₆alkoxy.

In some embodiments of these compounds, R⁷is C₁-C₃alkyl.

In some embodiments of these compounds, R³and R⁴are hydrogen.

In some embodiments of these compounds, at least one of R³and R⁴is C₁-C₆alkyl.

In some embodiments of these compounds, Q is CH or CR²³.

In some embodiments of these compounds, Q is N.

The present disclosure provides a compound of Formula IV:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

R²⁵is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, and substituted amino;

R²⁶is hydrogen, C₁-C₆alkyl, or substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with halogen, hydroxy, cyano, nitro, sulfonyl, sulfonylamino, aminosulfonyl, amino, or substituted amino;

R²²is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino, acylamino, alkoxycarbonylamino, and aminocarbonylamino;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, R²⁵and R²⁶are hydrogen.

In some embodiments of these compounds, R²³is hydrogen, halogen, or C₁-C₆alkoxy.

In some embodiments of these compounds, Q is CH.

In some embodiments of these compounds, R⁷is C₁-C₃alkyl.

In some embodiments of these compounds, R³and R⁴are hydrogen.

The present disclosure provides a compound of Formula V:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

R²²is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino acylamino, alkoxycarbonylamino, and aminocarbonylamino;

R²³is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino acylamino, alkoxycarbonylamino, and aminocarbonylamino;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, R²⁴and R²⁵are hydrogen.

In some embodiments of these compounds, R²⁶is hydrogen.

In some embodiments of these compounds, R²⁶is substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with hydroxy.

In some embodiments of these compounds, R²⁴, R²⁵and R²⁶are hydrogen.

In some embodiments of these compounds, R²³is hydrogen, halogen, or C₁-C₆alkoxy.

In some embodiments of these compounds, Q is CH or CR²³.

In some embodiments of these compounds, Q is N.

In some embodiments of these compounds, R⁷is C₁-C₃alkyl.

In some embodiments of these compounds, R³and R⁴are hydrogen.

In some embodiments of these compounds, at least one of R³and R⁴is C₁-C₆alkyl.

The present disclosure provides a compound of Formula Id:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

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each R^ais independently hydrogen or C₁-C₆alkyl;

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl; and

n is one or two;

or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula VI:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula VII:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or (CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl; or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula VIII:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula IX:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula X:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

The present disclosure provides a compound of Formula XI:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Other aspects of the invention provide pharmaceutical compositions comprising a compound of the invention and methods of using these compounds and compositions for treating proliferative disorders such as cancers.

The present disclosure provides a pharmaceutical composition comprising a compound of Formula I-XI admixed with at least one pharmaceutically acceptable carrier or excipient. In some embodiments, the pharmaceutical composition can comprise at least one sterile pharmaceutically acceptable carrier or excipient. In some embodiments, the pharmaceutical composition can comprise at least two pharmaceutically acceptable carriers and/or excipients.

The present disclosure provides a compound of Formula I-XI for use in therapy. In some embodiments, the use in therapy is a use to treat cancer. In some embodiments, the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

The present disclosure provides a method to treat cancer, which comprises administering to a subject in need thereof an effective amount of a compound of Formula I-XI. In some embodiments, the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

The present disclosure provides a use of a compound of Formula I-XI for the manufacture of a medicament. In some embodiments, the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

BRIEF DESCRIPTION OF THE DRAWINGS

The patent or application file contains five drawings executed in color which are necessary to accurately and clearly depict the subject matter sought to be patented. Copies of this patent or patent application publication with color drawings will be provided by the office upon request and payment of the necessary fee.

FIG. 1 shows detailed assay plots of H1975 viability assay for Compounds 13a, 13b, 19 and WZ4002.

FIG. 2 shows detailed assay plots of HeLa cell viability assay for Compounds 13a, 13b, 19 and WZ4002.

FIG. 3 shows detailed assay plots of H1975 EGF stimulation assay for Compounds 13a, 13b, 19 and WZ4002.

FIG. 4 shows detailed assay plots of A431 EGF stimulation assay for Compounds 13a, 13b, 19 and WZ4002.

FIG. 5 shows detailed assay plots of A431 EGF stimulation assay for BIBW2992 and erlotinib.

DESCRIPTION OF SELECTED EMBODIMENTS

General Definitions:

Unless defined otherwise, all technical and scientific terms used herein have the same meaning as is commonly understood by one of ordinary skill in the art to which this invention belongs. All patents, applications, published applications and other publications referred to herein are incorporated by reference in their entireties. If a definition set forth in this section is contrary to or otherwise inconsistent with a definition set forth in a patent, application, or other publication that is herein incorporated by reference, the definition set forth in this section prevails over the definition incorporated herein by reference.

As used herein, “a” or “an” means “at least one” or “one or more”.

The term “alkyl” as used herein refers to saturated hydrocarbon groups in a straight, branched, or cyclic configuration or any combination thereof, and particularly contemplated alkyl groups include those having ten or less carbon atoms, especially 1-6 carbon atoms and lower alkyl groups having 1-4 carbon atoms. Exemplary alkyl groups are methyl, ethyl, propyl, isopropyl, butyl, sec-butyl, tertiary butyl, pentyl, isopentyl, hexyl, cyclopropylmethyl, etc.

Alkyl groups can be unsubstituted, or they can be substituted to the extent that such substitution makes sense chemically. Typical substituents include, but are not limited to, halo, ═O, ═N—CN, ═N—OR^a, ═NR^a, —OR^a, —NR^a₂, —SR^a, —SO₂R^a, —SO₂NR^a₂, —NR^aSO₂R^a, —NR^aCONR^a₂, —NR^aCOOR^a, —NR^aCOR^a, —CN, —COOR^a, —CONR^a₂, —OOCR^a, —COR^a, and —NO₂, wherein each R^ais independently H, C1-C8 alkyl, C2-C8 heteroalkyl, C3-C8 heterocyclyl, C4-C10 heterocyclyclalkyl, C1-C8 acyl, C2-C8 heteroacyl, C2-C8 alkenyl, C2-C8 heteroalkenyl, C2-C8 alkynyl, C2-C8 heteroalkynyl, C6-C10 aryl, or C5-C10 heteroaryl, and each R^ais optionally substituted with halo, ═O, ═N—CN, ═N—OR^b, ═NR^b, OR^b, NR^b₂, SR^b, SO₂R^b, SO₂NR^b₂, NR^bSO₂R^b, NR^bCONR^b₂, NR^bCOOR^b, NR^bCOR^b, CN, COOR^b, CONR^b₂, OOCR^b, COR^b, and NO₂, wherein each R^bis independently H, C1-C8 alkyl, C2-C8 heteroalkyl, C3-C8 heterocyclyl, C4-C10 heterocyclyclalkyl, C1-C8 acyl, C2-C8 heteroacyl, C6-C10 aryl or C5-C10 heteroaryl. Alkyl, alkenyl and alkynyl groups can also be substituted by C1-C8 acyl, C2-C8 heteroacyl, C6-C10 aryl or C5-C10 heteroaryl, each of which can be substituted by the substituents that are appropriate for the particular group. Where a substituent group contains two R^aor R^bgroups on the same or adjacent atoms (e.g., —NR^b2, or —NR^b—C(O) R^b), the two R^aor R^bgroups can optionally be taken together with the atoms in the substituent group to which the are attached to form a ring having 5-8 ring members, which can be substituted as allowed for the R^aor R^bitself, and can contain an additional heteroatom (N, O or S) as a ring member.

The term “alkenyl” as used herein refers to an alkyl as defined above having at least two carbon atoms and at least one carbon-carbon double bond. Thus, particularly contemplated alkenyl groups include straight, branched, or cyclic alkenyl groups having two to ten carbon atoms (e.g., ethenyl, propenyl, butenyl, pentenyl, etc.) or 5-10 atoms for cyclic alkenyl groups. Alkenyl groups are optionally substituted by groups suitable for alkyl groups as set forth herein.

Similarly, the term “alkynyl” as used herein refers to an alkyl or alkenyl as defined above and having at least two (preferably three) carbon atoms and at least one carbon-carbon triple bond. Especially contemplated alkynyls include straight, branched, or cyclic alkynes having two to ten total carbon atoms (e.g., ethynyl, propynyl, butynyl, cyclopropylethynyl, etc.). Alkynyl groups are optionally substituted by groups suitable for alkyl groups as set forth herein.

The term “cycloalkyl” as used herein refers to a cyclic alkane (i.e., in which a chain of carbon atoms of a hydrocarbon forms a ring), preferably including three to eight carbon atoms. Thus, exemplary cycloalkanes include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. Cycloalkyls also include one or two double bonds, which form the “cycloalkenyl” groups. Cycloalkyl groups are optionally substituted by groups suitable for alkyl groups as set forth herein.

The term “aryl” or “aromatic moiety” as used herein refers to an aromatic ring system, which may further include one or more non-carbon atoms. These are typically 5-6 membered isolated rings, or 8-10 membered bicyclic groups, and can be substituted. Thus, contemplated aryl groups include (e.g., phenyl, naphthyl, etc.) and pyridyl. Further contemplated aryl groups may be fused (i.e., covalently bound with 2 atoms on the first aromatic ring) with one or two 5- or 6-membered aryl or heterocyclic group, and are thus termed “fused aryl” or “fused aromatic”.

Aromatic groups containing one or more heteroatoms (typically N, O or S) as ring members can be referred to as heteroaryl or heteroaromatic groups. Typical heteroaromatic groups include monocyclic C5-C6 aromatic groups such as pyridyl, pyrimidyl, pyrazinyl, thienyl, furanyl, pyrrolyl, pyrazolyl, thiazolyl, oxazolyl, isothiazolyl, isoxazolyl, and imidazolyl and the fused bicyclic moieties formed by fusing one of these monocyclic groups with a phenyl ring or with any of the heteroaromatic monocyclic groups to form a C8-C10 bicyclic group such as indolyl, benzimidazolyl, indazolyl, benzotriazolyl, isoquinolyl, quinolyl, benzothiazolyl, benzofuranyl, pyrazolopyridyl, pyrazolopyrimidyl, quinazolinyl, quinoxalinyl, cinnolinyl, and the like. Any monocyclic or fused ring bicyclic system which has the characteristics of aromaticity in terms of electron distribution throughout the ring system is included in this definition. It also includes bicyclic groups where at least the ring which is directly attached to the remainder of the molecule has the characteristics of aromaticity. Typically, the ring systems contain 5-12 ring member atoms.

As also used herein, the terms “heterocycle”, “cycloheteroalkyl”, and “heterocyclic moieties” are used interchangeably herein and refer to any compound in which a plurality of atoms form a ring via a plurality of covalent bonds, wherein the ring includes at least one atom other than a carbon atom as a ring member. Particularly contemplated heterocyclic rings include 5- and 6-membered rings with nitrogen, sulfur, or oxygen as the non-carbon atom (e.g., imidazole, pyrrole, triazole, dihydropyrimidine, indole, pyridine, thiazole, tetrazole etc.). Typically these rings contain 0-1 oxygen or sulfur atoms, at least one and typically 2-3 carbon atoms, and up to four nitrogen atoms as ring members. Further contemplated heterocycles may be fused (i.e., covalently bound with two atoms on the first heterocyclic ring) to one or two carbocyclic rings or heterocycles, and are thus termed “fused heterocycle” or “fused heterocyclic ring” or “fused heterocyclic moieties” as used herein. Where the ring is aromatic, these can be referred to herein as ‘heteroaryl’ or heteroaromatic groups.

Heterocyclic groups that are not aromatic can be substituted with groups suitable for alkyl group substituents, as set forth above.

Aryl and heteroaryl groups can be substituted where permitted. Suitable substituents include, but are not limited to, halo, —OR^a, —NR^a₂, —SR^a, —SO₂R^a, —SO₂NR^a₂, —NR^aSO₂R^a, —NR^aCONR^a₂, —NR^aCOOR^a, —NR^aCOR^a, —CN, —COOR^a, —CONR^a₂, —OOCR^a, —COR^a, and —NO₂, wherein each R^ais independently H, C1-C8 alkyl, C2-C8 heteroalkyl, C3-C8 heterocyclyl, C4-C10 heterocyclyclalkyl, C1-C8 acyl, C2-C8 heteroacyl, C2-C8 alkenyl, C2-C8 heteroalkenyl, C2-C8 alkynyl, C2-C8 heteroalkynyl, C6-C10 aryl, or C5-C10 heteroaryl, and each R^ais optionally substituted with halo, ═O, ═N—CN, ═N—OR^b, ═NR^b, OR^b, NR^b₂, SR^b, SO₂R^b, SO₂NR^b₂, NR^bSO₂R^b, NR^bCONR^b₂, NR^bCOOR^b, NR^bCOR^b, CN, COOR^b, CONR^b₂, OOCR^b, COR^b, and NO₂, wherein each R^bis independently H, C1-C8 alkyl, C2-C8 heteroalkyl, C3-C8 heterocyclyl, C4-C10 heterocyclyclalkyl, C1-C8 acyl, C2-C8 heteroacyl, C6-C10 aryl or C5-C10 heteroaryl. Alkyl, alkenyl and alkynyl groups can also be substituted by C1-C8 acyl, C2-C8 heteroacyl, C6-C10 aryl or C5-C10 heteroaryl, each of which can be substituted by the substituents that are appropriate for the particular group. Where a substituent group contains two R^aor R^bgroups on the same or adjacent atoms (e.g., —NR^b2, or —NR^b—C(O) R^b), the two R^aor R^bgroups can optionally be taken together with the atoms in the substituent group to which the are attached to form a ring having 5-8 ring members, which can be substituted as allowed for the R^aor R^bitself, and can contain an additional heteroatom (N, O or S) as a ring member.

As also used herein, the terms “imidazopyridine” or “imidazopyrimidine” or “thiazopyridine” or “thiazopyrimidine” herein refer to any compound in which the two designated heterocyclic rings are fused by any two adjacent atoms on the two heterocyclic rings.

The term “alkoxy” as used herein refers to a hydrocarbon group connected through an oxygen atom, e.g., —O—Hc, wherein the hydrocarbon portion Hc may have any number of carbon atoms, typically 1-10 carbon atoms, may further include a double or triple bond and may include one or two oxygen, sulfur or nitrogen atoms in the alkyl chains, and can be substituted with aryl, heteroaryl, cycloalkyl, and/or heterocyclyl groups. For example, suitable alkoxy groups include methoxy, ethoxy, propyloxy, isopropoxy, methoxyethoxy, benzyloxy, allyloxy, and the like. Similarly, the term “alkylthio” refers to alkylsulfides of the general formula —S—Hc, wherein the hydrocarbon portion Hc is as described for alkoxy groups. For example, contemplated alkylthio groups include methylthio, ethylthio, isopropylthio, methoxyethylthio, benzylthio, allylthio, and the like.

The term ‘amino’ as used herein refers to the group —NH₂. The term “alkylamino” refers to amino groups where one or both hydrogen atoms are replaced by a hydrocarbon group Hc as described above, wherein the amino nitrogen “N” can be substituted by one or two Hc groups as set forth for alkoxy groups described above. Exemplary alkylamino groups include methylamino, dimethylamino, ethylamino, diethylamino, etc. Also, the term “substituted amino” refers to amino groups where one or both hydrogen atoms are replaced by a hydrocarbon group Hc as described above, wherein the amino nitrogen “N” can be substituted by one or two Hc groups as set forth for alkoxy groups described above.

The term ‘acyl’ as used herein refers to a group of the formula —C(═O)—D, where D represents an alkyl, alkenyl, alkynyl, cycloalkyl, aryl, heteroaryl, or heterocycle as described above. Typical examples are groups wherein D is a C1-C10 alkyl, C2-C10 alkenyl or alkynyl, or phenyl, each of which is optionally substituted. In some embodiments, D can be H, Me, Et, isopropyl, propyl, butyl, C1-C4 alkyl substituted with —OH, —OMe, or NH₂, phenyl, halophenyl, alkylphenyl, and the like.

The term “aryloxy” as used herein refers to an aryl group connecting to an oxygen atom, wherein the aryl group may be further substituted. For example suitable aryloxy groups include phenyloxy, etc. Similarly, the term “arylthio” as used herein refers to an aryl group connecting to a sulfur atom, wherein the aryl group may be further substituted. For example suitable arylthio groups include phenylthio, etc.

The hydrocarbon portion of each alkoxy, alkylthio, alkylamino, and aryloxy, etc. can be substituted as appropriate for the relevant hydrocarbon moiety.

The term “halogen” as used herein refers to fluorine, chlorine, bromine and iodine. Where present as a substituent group, halogen or halo typically refers to F or Cl or Br, more typically F or Cl.

The term “haloalkyl” refers to an alkyl group as described above, wherein one or more hydrogen atoms on the alkyl group have been substituted with a halo group. Examples of such groups include, without limitation, fluoroalkyl groups, such as fluoroethyl, trifluoromethyl, difluoromethyl, trifluoroethyl and the like.

The term “haloalkoxy” refers to the group alkyl-O— wherein one or more hydrogen atoms on the alkyl group have been substituted with a halo group and include, by way of examples, groups such as trifluoromethoxy, and the like.

The term “sulfonyl” refers to the group SO₂-alkyl, SO₂-substituted alkyl, SO₂-alkenyl, SO₂-substituted alkenyl, SO₂-cycloalkyl, SO₂-substituted cycloalkyl, SO₂-cycloalkenyl, SO₂-substituted cycloalkenyl, SO₂-aryl, SO₂-substituted aryl, SO₂-heteroaryl, SO₂-substituted heteroaryl, SO₂-heterocyclic, and SO₂-substituted heterocyclic, wherein each alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, heterocyclic, and substituted heterocyclic are as defined herein. Sulfonyl includes, by way of example, methyl-SO₂—, phenyl-SO₂—, and 4-methylphenyl-SO₂—.

The term “sulfonylamino” refers to the group —NR²¹SO₂R²², wherein R²¹and R²²independently are selected from the group consisting of hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl, substituted aryl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, heteroaryl, substituted heteroaryl, heterocyclic, and substituted heterocyclic and where R²¹and R²²are optionally joined together with the atoms bound thereto to form a heterocyclic or substituted heterocyclic group, and wherein alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, heterocyclic, and substituted heterocyclic are as defined herein

The term “aminosulfonyl” refers to the group —SO₂NR²¹R²², wherein R²¹and R²²independently are selected from the group consisting of hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl, substituted aryl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, heteroaryl, substituted heteroaryl, heterocyclic, substituted heterocyclic and where R²¹and R²²are optionally joined together with the nitrogen bound thereto to form a heterocyclic or substituted heterocyclic group and alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, heterocyclic and substituted heterocyclic are as defined herein.

The term “acylamino” refers to the groups —NR²⁰C(O)alkyl, —NR²⁰C(O)substituted alkyl, —NR²⁰C(O)cycloalkyl, —NR²⁰C(O)substituted cycloalkyl, —NR²⁰C(O)cycloalkenyl, —NR²⁰C(O)substituted cycloalkenyl, —NR²⁰C(O)alkenyl, —NR²⁰C(O)substituted alkenyl, —NR²⁰C(O)alkynyl, —NR²⁰C(O)substituted alkynyl, —NR²⁰C(O)aryl, —NR²⁰C(O)substituted aryl, —NR²⁰C(O)heteroaryl, —NR²⁰C(O)substituted heteroaryl, —NR²⁰C(O)heterocyclic, and —NR20C(O)substituted heterocyclic, wherein R²⁰is hydrogen or alkyl and wherein alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, heterocyclic, and substituted heterocyclic are as defined herein.

The term “alkoxycarbonylamino” refers to the group —NRC(O)OR where each R is independently hydrogen, alkyl, substituted alkyl, aryl, heteroaryl, or heterocyclyl wherein alkyl, substituted alkyl, aryl, heteroaryl, and heterocyclyl are as defined herein

The term “aminocarbonylamino” refers to the group —NR20C(O)NR²¹R²², wherein R²⁰is hydrogen or alkyl and R²¹and R²²independently are selected from the group consisting of hydrogen, alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, aryl, substituted aryl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, heteroaryl, substituted heteroaryl, heterocyclic, and substituted heterocyclic and where R²¹and R²²are optionally joined together with the nitrogen bound thereto to form a heterocyclic or substituted heterocyclic group, and wherein alkyl, substituted alkyl, alkenyl, substituted alkenyl, alkynyl, substituted alkynyl, cycloalkyl, substituted cycloalkyl, cycloalkenyl, substituted cycloalkenyl, aryl, substituted aryl, heteroaryl, substituted heteroaryl, heterocyclic and substituted heterocyclic are as defined herein.

It should further be recognized that all of the above-defined groups may further be substituted with one or more substituents, which may in turn be substituted with hydroxy, amino, cyano, C1-C4 alkyl, halo, or C1-C4 haloalkyl. For example, a hydrogen atom in an alkyl or aryl can be replaced by an amino, halo or C1-4 haloalkyl or alkyl group.

The term “substituted” as used herein refers to a replacement of a hydrogen atom of the unsubstituted group with a functional group, and particularly contemplated functional groups include nucleophilic groups (e.g., —NH₂, —OH, —SH, —CN, etc.), electrophilic groups (e.g., C(O)OR, C(X)OH, etc.), polar groups (e.g., —OH), non-polar groups (e.g., heterocycle, aryl, alkyl, alkenyl, alkynyl, etc.), ionic groups (e.g., —NH₃⁺), and halogens (e.g., —F, —Cl), NHCOR, NHCONH₂, OCH₂COOH, OCH₂CONH₂, OCH₂CONHR, NHCH₂COOH, NHCH₂CONH₂, NHSO₂R, OCH₂-heterocycles, PO₃H, SO₃H, amino acids, and all chemically reasonable combinations thereof. Moreover, the term “substituted” also includes multiple degrees of substitution, and where multiple substituents are disclosed or claimed, the substituted compound can be independently substituted by one or more of the disclosed or claimed substituent moieties.

In addition to the disclosure herein, in a certain embodiment, a group that is substituted has 1, 2, 3, or 4 substituents, 1, 2, or 3 substituents, 1 or 2 substituents, or 1 substituent.

It is understood that in all substituted groups defined above, compounds arrived at by defining substituents with further substituents to themselves (e.g., substituted aryl having a substituted aryl group as a substituent which is itself substituted with a substituted aryl group, which is further substituted by a substituted aryl group, etc.) are not intended for inclusion herein. In such cases, the maximum number of such substitutions is three. For example, serial substitutions of substituted aryl groups specifically contemplated herein are limited to substituted aryl-(substituted aryl)-substituted aryl.

Unless indicated otherwise, the nomenclature of substituents that are not explicitly defined herein are arrived at by naming the terminal portion of the functionality followed by the adjacent functionality toward the point of attachment. For example, the substituent “arylalkyloxycarbonyl” refers to the group (aryl)-(alkyl)-O—C(O)—.

As to any of the groups disclosed herein which contain one or more substituents, it is understood, of course, that such groups do not contain any substitution or substitution patterns which are sterically impractical and/or synthetically non-feasible. In addition, the subject compounds include all stereochemical isomers arising from the substitution of these compounds.

The term “pharmaceutically acceptable salt” means a salt which is acceptable for administration to a patient, such as a mammal, such as human (salts with counterions having acceptable mammalian safety for a given dosage regime). Such salts can be derived from pharmaceutically acceptable inorganic or organic bases and from pharmaceutically acceptable inorganic or organic acids. “Pharmaceutically acceptable salt” refers to pharmaceutically acceptable salts of a compound, which salts are derived from a variety of organic and inorganic counter ions well known in the art and include, by way of example only, sodium, potassium, calcium, magnesium, ammonium, tetraalkylammonium, and the like; and when the molecule contains a basic functionality, salts of organic or inorganic acids, such as hydrochloride, hydrobromide, formate, tartrate, besylate, mesylate, acetate, maleate, oxalate, and the like.

The term “salt thereof” means a compound formed when a proton of an acid is replaced by a cation, such as a metal cation or an organic cation and the like. Where applicable, the salt is a pharmaceutically acceptable salt, although this is not required for salts of intermediate compounds that are not intended for administration to a patient. By way of example, salts of the present compounds include those wherein the compound is protonated by an inorganic or organic acid to form a cation, with the conjugate base of the inorganic or organic acid as the anionic component of the salt.

The compounds and compositions described herein can be administered to a subject in need of treatment for a cell proliferation disorder such as cancer, particularly cancers selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer. The subject is typically a mammal diagnosed as being in need of treatment for one or more of such proliferative disorders, and frequently the subject is a human. The methods comprise administering an effective amount of at least one compound of the invention; optionally the compound may be administered in combination with one or more additional therapeutic agents, particularly therapeutic agents known to be useful for treating the cancer or proliferative disorder afflicting the particular subject.

Exemplary Compounds

Formula I

In one aspect, the invention provides a compound of Formula (I):

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO2, C1-C6 alkyl or C1-C6 haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, 0, S, CH, or CR²;

not more than one of them is absent;

R¹and R²is independently selected from H, OH, Halo, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, and CR(COOR)₂;

Y is H, OH, Halo, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Z is H, OH, Halo, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

R¹⁰is halogen or C_rC₆alkyl; and

each R—¹¹is independently hydrogen, C_rC₃alkyl, C,—C₃alkoxy, C,—C₃haloalkyl, or C C₃haloalkoxy;

R¹²is CH₂or C(O);

X^2bis O, S, NH, or NR;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, X is C1-C6 haloalkyl.

In another embodiment of these compounds, X is CF₂, CHF, CHCF₃or C(CF₃)₂.

In another embodiment of these compounds Z is NRR, where the two R groups can optionally be taken together with the N atom in the substituent group to which the two R groups are attached to form a ring having 5-8 ring members, which can be substituted as allowed for the R itself, and can contain an additional heteroatom (N, O or S) as a ring member.

Formula Ia

In another embodiment, the compounds have a structure according to Formula Ia:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO₂, C₁-C₆alkyl or C₁-C₆haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

Y is H, OH, halogen, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

X^2bis O, S, NH, or NR;

Z is H, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, X is C₁-C₆haloalkyl.

In some embodiments of these compounds, X is selected from CF₂, CHF, CHCF₃or C(CF₃)₂.

In some embodiments of these compounds, R is substituted or unsubstituted C_2-20alkenyl. In some embodiments of these compounds, R is substituted or unsubstituted C_2-8alkenyl.

In some embodiments of these compounds, R⁹is C₁-C₆alkyl.

In some embodiments of these compounds, R³⁰is hydrogen, halogen, or C₁-C₆alkyl. In some embodiments of these compounds, R³⁰is halogen or C₁-C₆alkyl.

Formula Ib

In another embodiment, the compounds have a structure according to Formula Ib:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring; X is O, S, C═O, —NR, SO, SO₂, C₁-C₆alkyl or C₁-C₆haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

Y is H, OH, halogen, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Z is H, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

X^2bis O, S, NH, or NR;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, X is C₁-C₆haloalkyl.

In some embodiments of these compounds, X is selected from CF₂, CHF, CHCF₃or C(CF₃)₂.

In some embodiments of these compounds, R is substituted or unsubstituted C_2-20alkenyl. In some embodiments of these compounds, R is substituted or unsubstituted C_2-8alkenyl.

In some embodiments of these compounds, R⁹is C₁-C₆alkyl.

In some embodiments of these compounds, R³⁰is hydrogen, halogen, or C₁-C₆alkyl. In some embodiments of these compounds, R³⁰is halogen or C₁-C₆alkyl.

Formula Ic

In another embodiment, the compounds have a structure according to Formula Ic:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

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each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

Formula Id

In another embodiment, the compounds have a structure according to Formula Id:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

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each R^ais independently hydrogen or C₁-C₆alkyl;

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl; and

n is one or two;

or a pharmaceutically acceptable salt thereof.

Formula II

In another embodiment, the compounds have a structure according to Formula II:

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where X is halo wherein the halo is Cl, F, I, or Br.

In some embodiments of these compounds, halo is F, I, or Br. In some embodiments of these compounds, halo is F.

Formula IIa

The present disclosure provides a compound of Formula II:

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where X is C₁-C₆alkyl, C₁-C₆alkoxy, or halo, wherein the halo is Cl, F, I, or Br.

In some embodiments of these compounds, halo is F, I, or Br. In some embodiments of these compounds, X is C₁-C₃alkyl. In some embodiments of these compounds, X is methyl. In some embodiments of these compounds, X is C₁-C₃alkoxy. In some embodiments of these compounds, X is methoxy.

Formula III

In another embodiment, the compounds have a structure according to Formula III:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or (CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In some embodiments of compounds, X is CF₂. In some embodiments of compounds, X is O. In some embodiments, X is CH₂. In some embodiments of compounds, X is S. In some embodiments, X is NR^b. In some embodiments, X is NR^b, wherein R^bis hydrogen or C₁-C₆alkyl.

In some embodiments of these compounds, R²⁰is hydrogen, halogen, C₁-C₆alkyl, or C₁-C₆alkoxy. In some embodiments of these compounds, R²⁰is hydrogen, fluoro, chloro, C₁-C₆alkyl, or C₁-C₆alkoxy. In some embodiments of these compounds, R²⁰is hydrogen, fluoro, iodo, bromo, C₁-C₆alkyl, or C₁-C₆alkoxy. In some embodiments of compounds, R²⁰is not Cl. In some embodiments of compounds, when X is O, R²⁰is not Cl.

In some embodiments, R²⁰is methoxy, fluoro, chloro, or methyl. In some embodiments, R²⁰is methoxy, ethoxy, propoxy, or isopropoxy. In some embodiments, R²⁰is methoxy. In some embodiments, R²⁰is fluoro or chloro. In some embodiments, R²⁰is fluoro. In some embodiments, R²⁰is chloro. In some embodiments, R²⁰is methyl, ethyl, propyl, isopropyl, or butyl. In some embodiments, R²⁰is methyl.

In some embodiments of these compounds, R²¹is hydrogen.

In some embodiments of these compounds, R²³is hydrogen, halogen, or C₁-C₆alkoxy.

In some embodiments, R²³is situated ortho to NR⁶. In some embodiments, R²³is situated meta to NR⁶.

In some embodiments, R²³is hydrogen. In some embodiments, R²³is methoxy, ethoxy, propoxy, or isopropoxy. In some embodiments, R²³is methoxy. In some embodiments, R²³is fluoro. In some embodiments, R²³is methoxy or fluoro.

In some embodiments of these compounds, R⁷is C₁-C₃alkyl.

In some embodiments, R⁷is methyl, ethyl, propyl, isopropyl, or butyl. In some embodiments, R⁷is methyl or ethyl. In some embodiments, R⁷is methyl. In some embodiments, R⁷is ethyl.

In some embodiments of these compounds, R³and R⁴are hydrogen. In some embodiments of these compounds, at least one of R³and R⁴is C₁-C₆alkyl. In some embodiments, at least one of R³and R⁴is C₁-C₃alkyl. In some embodiments, at least one of R³and R⁴is methyl. In some embodiments of these compounds, at least one of R³and R⁴is —(CH₂)_mN(R^a)₂, wherein m is one to 6. In some embodiments of these compounds, at least one of R³and R⁴is —CH₂N(CH₃)₂.

In some embodiments of these compounds, Q is CH or CR²³. In some embodiments of these compounds, Q is N.

In some embodiments, Q is CH. In some embodiments, Q is CR²³, where R²³is halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, or C₁-C₆haloalkoxy. In some embodiments, Q is CR²³, where R²³is halogen. In some embodiments, Q is CR²³, where R²³is fluoro. In some embodiments, Q is CR²³, where R²³is chloro.

In some embodiments, R⁵is hydrogen. In some embodiments, R⁵is methyl.

In some embodiments, R⁶is hydrogen. In some embodiments, R⁶is methyl.

In some embodiments, R²²is hydrogen.

Formula IV

In another embodiment, the compounds have a structure according to Formula IV:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, R²⁵and R²⁶are hydrogen.

In some embodiments, R²⁵is hydrogen. In some embodiments, R²⁶is hydrogen.

In some embodiments of these compounds, R²³is hydrogen, halogen, or C₁-C₆alkoxy.

In some embodiments, R²³is situated ortho to NR⁶. In some embodiments, R²³is situated meta to NR⁶.

In some embodiments of these compounds, Q is CH.

In some embodiments of these compounds, R⁷is C₁-C₃alkyl.

In some embodiments, R⁷is methyl, ethyl, propyl, isopropyl, or butyl. In some embodiments, R⁷is methyl or ethyl. In some embodiments, R⁷is methyl. In some embodiments, R⁷is ethyl.

In some embodiments, R⁵is hydrogen. In some embodiments, R⁵is methyl.

In some embodiments, R⁶is hydrogen. In some embodiments, R⁶is methyl.

In some embodiments, R²²is hydrogen.

Formula V

In another embodiment, the compounds have a structure according to Formula V:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

R²²is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino acylamino, alkoxycarbonylamino, and aminocarbonylamino;

R²³is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino acylamino, alkoxycarbonylamino, and aminocarbonylamino;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

In some embodiments of these compounds, R²⁴and R²⁵are hydrogen.

In some embodiments, R²⁴is hydrogen. In some embodiments, R²⁵is hydrogen.

In some embodiments of these compounds, R²⁶is hydrogen. In some embodiments of these compounds, R²⁶is substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with hydroxy.

In some embodiments of these compounds, R^24,, R²⁵and R²⁶are hydrogen.

In some embodiments of these compounds, R²³is hydrogen, halogen, or C₁-C₆alkoxy.

In some embodiments, R²³is situated ortho to NR⁶. In some embodiments, R²³is situated meta to NR⁶.

In some embodiments of these compounds, Q is CH or CR²³.

In some embodiments of these compounds, Q is N.

In some embodiments of these compounds, R⁷is C₁-C₃alkyl.

In some embodiments, R⁷is methyl, ethyl, propyl, isopropyl, or butyl. In some embodiments, R⁷is methyl or ethyl. In some embodiments, R⁷is methyl. In some embodiments, R⁷is ethyl.

In some embodiments of these compounds, R³and R⁴are hydrogen. In some embodiments of these compounds, at least one of R³and R⁴is C₁-C₆alkyl. In some embodiments, at least one of R³and R⁴is C_l-C₃alkyl. In some embodiments, at least one of R³and R⁴is methyl. In some embodiments of these compounds, at least one of R³and R⁴is —(CH₂)_mN(R^a)₂, wherein m is one to 6. In some embodiments of these compounds, at least one of R³and R⁴is —CH₂N(CH₃)₂.

In some embodiments, R⁵is hydrogen. In some embodiments, R⁵is methyl.

In some embodiments, R⁶is hydrogen. In some embodiments, R⁶is methyl.

In some embodiments, R²²is hydrogen.

Formula VI

In another embodiment, the compounds have a structure according to Formula VI:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Formula VII

In another embodiment, the compounds have a structure according to Formula VII:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Formula VIII

In another embodiment, the compounds have a structure according to Formula VIII:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Formula IX

In another embodiment, the compounds have a structure according to Formula IX:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl; or a pharmaceutically acceptable salt thereof.

Formula X

In another embodiment, the compounds have a structure according to Formula X:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Formula XI

In another embodiment, the compounds have a structure according to Formula XI:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

In the compounds of Formula VI-XI, X is CH₂, CF₂, S, O, or NH. In some embodiments of compounds of Formula VI-XI, X is CF₂. In some embodiments of compounds of Formula VI-XI, X is S. In some embodiments of compounds of Formula VI-XI, X is NH. In some embodiments of compounds of Formula VI-XI, X is CH₂or O. In some embodiments of compounds of Formula VI-XI, X is NR^b. In some embodiments, X is NR^b, wherein R^bis hydrogen or C₁-C₆alkyl.

In some embodiments of compounds of Formula VI-XI, R³and R⁴are hydrogen. In some embodiments of these compounds, at least one of R³and R⁴is C₁-C₆alkyl. In some embodiments, at least one of R³and R⁴is C₁-C₃alkyl. In some embodiments, at least one of R³and R⁴is methyl. In some embodiments of these compounds, at least one of R³and R⁴is —(CH₂)_mN(R^a)₂, wherein m is one to 6. In some embodiments of these compounds, at least one of R³and R⁴is —CH₂N(CH₃)₂.

In some embodiments of compounds of Formula VI-XI, R⁵is hydrogen. In some embodiments, R⁵is methyl.

In some embodiments of compounds of Formula VI-XI, R⁶is hydrogen. In some embodiments, R⁶is methyl.

In some embodiments of compounds of Formula VI-XI, R²²is hydrogen.

In some embodiments of compounds of Formula VI-XI, R⁴⁰and R⁴¹are hydrogen.

In some embodiments of compounds of Formula VI-XI, R²⁷and R²⁸are C₁-C₆alkyl. In some embodiments, R²⁷and R²⁸are C₁-C₃alkyl. In some embodiments, R²⁷and R²⁸are methyl.

In some embodiments of compounds of Formula VI-VII, R²⁰is hydrogen, halogen, C₁-C₆alkyl, or C₁-C₆alkoxy. In some embodiments of these compounds, R²⁰is hydrogen, fluoro, chloro, C₁-C₆alkyl, or C₁-C₆alkoxy. In some embodiments of these compounds, R²⁰is hydrogen, fluoro, iodo, bromo, C₁-C₆alkyl, or C₁-C₆alkoxy.

In some embodiments of compounds of Formula VI-VII, R²¹is hydrogen.

In some embodiments of compounds of Formula VIII-IX, R²⁴and R²⁵are hydrogen. In some embodiments, R²⁴is hydrogen. In some embodiments, R²⁵is hydrogen.

In some embodiments of compounds of Formula VIII-IX, R²⁶is hydrogen. In some embodiments of these compounds, R²⁶is optionally substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with hydroxy.

In some embodiments of compounds of Formula VIII-IX, R^24,, R²⁵and R²⁶are hydrogen.

In some embodiments of compounds of Formula X-XI, R²⁵and R²⁶are hydrogen. In some embodiments, R²⁵is hydrogen. In some embodiments, R²⁶is hydrogen.

In another aspect, the compounds of the present disclosure do not include the following compounds:

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In another aspect, the compounds of the present disclosure do not include compounds disclosed in WO 2010/129053, WO 2011/079231, and WO 2011/140338.

In another aspect, the invention provides a pharmaceutical composition comprising a compound according to any of the foregoing embodiments admixed with at least one pharmaceutically acceptable carrier or excipient. Suitable carriers and excipients are described herein. In some embodiments, this pharmaceutical composition comprises at least one sterile pharmaceutically acceptable carrier or excipient. In some embodiments, the composition comprises at least two pharmaceutically acceptable carriers and/or excipients.

In another aspect, the invention provides a compound according to any one of the foregoing embodiments for use in therapy. In particular embodiments of interest, the compound is for use in therapy to treat cancer, e.g., a cancer selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

In one aspect, the invention provides a method to treat cancer, which comprises administering to a subject in need thereof an effective amount of a compound according to any of the foregoing embodiments, or a pharmaceutical composition comprising one or more of such compounds. In some embodiments, the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

Similarly, the invention provides use of a compound according to any one of the foregoing embodiments for the manufacture of a medicament. In some embodiments, the medicament is one for treating cancer, and in some embodiments the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

It will be understood that the selections of W¹, W², W³, W⁴, W⁵, W⁶, W⁷, W⁸, W and Z, X, Y for any of the above cyclic groups would of course be made by a person of ordinary skill in the art in accordance with well known limitations associated with valence rules and stability. These atoms or bonds would thus be selected to provide only a stable ring or ring system consistent with well-known bonding and valence principles; thus these rings would not be constructed with —O—O— or —S—S— linkages in the rings, for example, or with inappropriate numbers of O or N or S atoms causing instability in aqueous media. Typically each ring of these compounds will be a 5-6 atom ring, whether aromatic or not, and will contain at least one carbon atom, no more than one O or S atom (except for a dioxane ring having two O atoms), and up to four N atoms as ring members. Non-aromatic rings will typically contain no more than two heteroatoms in place of ring carbon atoms, while aromatic rings containing 3-4 heteroatoms—especially N atoms—such as triazines, triazoles, tetrazines and tetrazoles, are included. Likewise, other groups such as R would be selected to avoid compounds generally considered to be too reactive for use as pharmaceuticals, e.g., R would not be Halo in groups such as NHR, NRR, OR, SR, or COOR.

Typical structures of,

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include but are not limited to,

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where Z′ is selected from the group of O, S, C═O, —NR, SO, SO2, C1-C6 alkyl and C1-C6 haloalkyl.

Suitable dosages, routes of administration, and administration protocols can be selected by a skilled person based on the information herein.

Exemplary Synthesis:

The compounds described above can be synthesized as illustrated in Scheme 1. Some representative compounds are illustrated in Scheme 2 and 3, which depicts some suitable Het groups for use in the compounds described above.

General Procedure for the Synthesis of Substituted Pyrimidine Derivatives (6, Scheme 1):

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Substituted 2,4-dichloropyrimidine 1 reacted with 3-nitrobenzaldehyde and 1,3-Dimethylimidazolium iodide in DMF for 4 h providing the corresponding substituted (2-chloropyrimidin-4-yl)(3-nitrophenyl)methanone 2. 2 was then further stirred with DAST in DCM at room temperature overnight providing the corresponding 2-chloro-4-(difluoro(3-nitrophenyl)methyl)pyrimidine 3. Pyrimidine 3 was coupled with aryl amine by Buchwald-Hartwig Pd catalyzed aryl C—N formation giving the desired product 4. The nitro group in 4 was then reduced to NH₂followed by amidation with acrylyl chloride to give the final compound 6.

Example 1
Synthesis of N-(3-(difluoro(2-(4-(4-methylpiperazin-1-yl)phenylamino)-9H-purin-6-yl)methyl)phenyl)acrylamide (13a) & N-(3-(difluoro(2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-91-1-purin-6-yl)methyl)phenyl)acrylamide (13b)

The synthesis of N-(3-(difluoro(2-(4-(4-methylpiperazin-1- yl)phenylamino)-9H-purin-6-yl)methyl)phenyl)acrylamide 13a and N-(3-(difluoro(2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-9H-purin-6-yl)methyl)phenyl)acrylamide 13b were shown in Scheme 2.

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Synthesis of 2, 6-dichloro-9-(tetrahydro-2H-pyran-2-yl)-9H-purine (8)

A mixture of 2,6-dichloropurine 7 (2.4 g, 12.7 mmol), PTSA (222 mg, 1.17 mmol) and 2H-3,4-dihydropyran (1.26 g, 15 mmol) in DCM (30 mL) was stirred at room temperature for 6 h. The mixture was concentrated and purified by column chromatography to give 8 (3.2 g, yield, 94%, M+H⁺=273) as a pale yellow solid.

Synthesis of (2-chloro-9-(tetrahydro-2H-pyran-2-yl)-9H-purin-6-yl)(3-nitrophenyl)methanone (9)

2, 6-dichloro-9-(tetrahydro-2H-pyran-2-yl)-9H-purine 8 (327 mg, 1.2 mmol) was dissolved in DMF (4 mL) at 0° C. and treated sequentially with 3-nitrobenzaldehyde (220 mg, 1.46 mmol), and 1,3-dimethylimidazolium iodide (109 mg, 0.49 mmol). Sodium hydride (78 mg, 60%, 1.95 mmol) was added slowly and then the mixture was warmed to room temperature. After being stirred for 4 h, the reaction was quenched with water and extracted with EA. The layers were separated. The dried (Na₂SO₄) organic layer was purified by chromatography on silica gel using hexanes/ethyl acetate 75:25 as eluent. The title compound 9 (230 mg, 50%, M+H⁺=389) was isolated as a yellow.

Synthesis of 2-chloro-6-(difluoro(3-nitrophenyl)methyl)-9-(tetrahydro-2H-pyran-2-yl)-9H-purine (10)

A round bottom flask equipped with a Teflon-coated magnetic stir bar was charged with 9 (136 mg, 0.35 mmol) in DCM (0.5 mL). The flask was capped with a rubber septum and purged with argon. (Diethylamino)sulfur trifluoride (200 mg, 1.24 mmol) was added by syringe. The mixture was stirred at room temperature overnight. The reaction was carefully poured into ice-water and the resulting mixture was extracted with DCM. The combined organic extracts were washed with brine and dried (Na₂SO₄). After filtration, removal of the volatiles in vacuo, the crude product was purified by flash chromatography afford the title compound 10 (M+H⁺=410) as a yellow solid.

Synthesis of 6-(difluoro(3-nitrophenyl)methyl)-N-(4-(4-methylpiperazin-1-yl)phenyl)-9-(tetrahydro-2H-pyran-2-yl)-9H-purin-2-amine (11a)

A mixture of above 10 (135 mg, 0.33 mmol), 4-(4-Methylpiperazino) aniline (100 mg, 0.52 mmol), tris(dibenzylideneacetone)dipalladium (20 mg, 0.022 mmol), dicyclohexyl (2′,4′,6′-triisopropylbiphenyl-2-yl) phosphine (70 mg, 0.15 mmol) and potassium carbonate (190 mg, 1.37 mmol) in tert-butanol (5 mL) was stirred under argon at 80° C. overnight. After cooling to RT, the reaction mixtures was filtered through Celite, the Celite was washed with methanol and the filtrates were concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH=20/1), giving the title compound 11a (190 mg, M+H⁺=565) as brown oil.

Synthesis of 6-(difluoro(3-nitrophenyl)methyl)-N-(2-methoxy-4-(4-methylpiperazin-1-yl)phenyl)-9-(tetrahydro-2H-pyran-2-yl)-9H-purin-2-amine (11b)

This title compound 11b was prepared according to the synthetic procedure of 11a, using 2-methoxy-4-(4-methylpiperazin-1-yl)aniline instead of 4-(4-Methylpiperazino) aniline.

Synthesis of 6-((3-aminophenyl)difluoromethyl)-N-(4-(4-methylpiperazin-1-yl)phenyl)-9-(tetrahydro-2H-pyran-2-yl)-9H-purin-2-amine (12a)

11a (190 mg, 0.34 mmol) was dissolved in THF (5 mL) and water (5 mL) was added. Iron powder (190 mg, 3.4 mmol) and saturated ammonium chloride aqueous (2.5 mL) were then added, and the resulting mixture was heated to reflux for 3 hours. The reaction mixture was cooled to room temperature and filtered through celite. The THF was removed under reduced pressure, and the resulting residue was basified with sodium bicarbonate and extracted with ethyl acetate. The organic layer was separated and dried using anhydrous sodium sulfate, concentrated, and purified by flash chromatography with 20:1 dichloromethane-methanol to afford the title compound 12a (200 mg, M+H⁺=535) as yellow solid.

Synthesis of 6-((3-aminophenyl) difluoromethyl)-N-(2-methoxy-4-(4-methylpiperazin-1-yl)phenyl)-9-(tetrahydro-2H-pyran-2-yl)-9H-purin-2-amine (12b)

This title compound 12b was prepared according to the procedure of 12a.

Synthesis of N-(3-(difluoro(2-(4-(4-methylpiperazin-1-yl)phenylamino)-9H-purin-6-yl)methyl)phenyl)acrylamide (13a)

Acryloyl chloride (60 mg, 0.66 mmol) was added drop-wise to a solution of 12a (200 mg, 0.37 mmol) and diisopropyethylamine (0.5 mL, 3.1 mmol) in methylene chloride (5 mL) at 0° C. The reaction was stirred for 1 h. And then water was added to quench the reaction. The solvent was removed under reduced pressure and the crude amide was obtained. To this crude amide, THF (3 mL) and HCl (3 mL, 3N) were added. The mixture was stirred at room temperature for 3 h. Then the reaction was quenched and basified with sodium hydrocarbonate and extracted with ethyl acetate. The organic layer was separated and dried using anhydrous sodium sulfate, concentrated, and purified by flash chromatography with 4:1 dichloromethane-methanol to afford the title compound 13a (20 mg, M+H⁺=505, purity 98.47%) as a yellow powder.

Synthesis of N-(3-(difluoro(2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-9H-purin-6-yl)methyl)phenyl)acrylamide (13b)

This title compound 13b was prepared according to the procedure of 13a.

Example 2
Synthesis of N-(3-(difluoro(5-fluoro-2-(4-(4-methylpiperazin-1-yl)phenylamino)pyrimidin-4-yl)methyl)phenyl)acrylamide (19)

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Synthesis of (2-chloro-5-fluoropyrimidin-4-yl)(3-nitrophenyl)methanone (15)

2, 4-dichloro-5-fluoropyrimidine 14 (1002 mg, 6 mmol) was dissolved in DMF (10 mL) at 0° C. and treated sequentially with 3-nitrobenzaldehyde (906 mg, 6 mmol), and 3-ethyl-l-methylimidazolium bromide (300 mg, 1.57 mmol). Sodium hydride (360 mg, 60%, 8.75 mmol) was added slowly. The mixture was stirred at −5-0° C. for 2 h, and then warmed to room temperature with stirring for 8 h. The reaction was then quenched with water and extracted with EA. The layers were separated. The dried (Na₂SO₄) organic layer was purified by chromatography on silica gel using hexanes/ethyl acetate 4:1 as an eluant. The title compound 9 (750 mg, 44%, M+H⁺=282.5) was isolated as white solid.

Synthesis of 2-chloro-4-(difluoro(3-nitrophenyl)methyl)-5-fluoropyrimidine (16)

A round bottom flask equipped with a Teflon-coated magnetic stir bar was charged with 15 (200 mg, 0.71 mmol) in DCM (2 mL). The flask was capped with a rubber septum and purged with argon. (Diethylamino)sulfur trifluoride (0.5 mL) was added by syringe. The mixture was stirred at room temperature overnight. The reaction was carefully poured into ice-water and the resulting mixture was extracted with DCM. The combined organic extracts were washed with brine and dried (Na₂SO₄). After filtration and removal of the solvent under reduced pressure, the crude was purified by flash chromatography affording the title compound 16 (186 mg, 61.3%, M+H⁺=304.5) as white solid.

Synthesis of 4-(difluoro(3-nitrophenyl)methyl)-5-fluoro-N-(4-(4-methylpiperazin-1-yl)phenyl)pyrimidin-2-amine (17)

A mixture of above 16 (60 mg, 0.20 mmol), 4-(4-Methylpiperazino) aniline (45 mg, 0.23 mmol), tris(dibenzylideneacetone)dipalladium (18 mg, 0.02 mmol), dicyclohexyl (2′,4′,6′- triisopropylbiphenyl-2-yl) phosphine (56 mg, 0.12 mmol) and potassium carbonate (109 mg, 0.78 mmol) in tert-butanol (2.6 mL) was stirred under argon at 80° C. overnight. After cooling to RT, the reaction mixtures was filtered through Celite, the Celite was washed with methanol and the filtrates were concentrated under reduced pressure. The residue was purified by flash column chromatography (DCM/MeOH=20/1) to give the title compound 17 (80 mg, 87%, M+H⁺=459.5) as brown oil.

Synthesis of 4-((3-aminophenyl)difluoromethyl)-5-fluoro-N-(4-(4-methylpiperazin-1-yl)phenyl)-pyrimidin-2-amine (18)

17 (80 mg, 0.18 mmol) was dissolved in THF (2 mL) and water (2 mL) was added. Iron powder (50 mg, 0.9 mmol) and saturated ammonium chloride aqueous (1.2 mL) were then added, and the resulting mixture was heated to reflux for 4 hours. The reaction mixture was cooled to room temperature and filtered through celite. The THF was removed under reduced pressure, and the resulting residue was basified with sodium bicarbonate and extracted with ethyl acetate. The organic layer was separated and dried using anhydrous sodium sulfate, concentrated, and purified by flash chromatography with 20:1 dichloromethane-methanol to afford the title compound 18 (51 mg, 68%, M+H⁺=429.5) as a yellow solid.

Synthesis of N-(3-(difluoro(5-fluoro-2-(4-(4-methylpiperazin-1-yl)phenylamino)pyrimidin-4-yl)methyl)phenyl)acrylamide (19)

Acryloyl chloride (20 mg, 0.20 mmol) was added dropwise to a solution of 18 (51 mg, 0.12 mmol) and diisopropyethylamine (0.17 mL, 1.05 mmol) in methylene chloride (1.5 mL) at 0° C. The reaction was stirred for 3 h. And then water was added to quench the reaction. The solvent was removed under reduced pressure and the crude amide was obtained. To this crude amide, THF (3 mL) and HCl (3 mL, 3N) were added. The mixture was stirred at room temperature for 3 h. Then the reaction was quenched and basified with sodium hydrocarbonate and extracted with ethyl acetate. The organic layer was separated and dried using anhydrous sodium sulfate, concentrated, and purified by flash chromatography with 4:1 dichloromethane-methanol to afford the title compound 19 (53 mg, 92%, M+H⁺=483.5, purity 98.47%) as yellow powder.

Using similar chemistry or synthetic route, the following compounds can also be synthesized:

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General Procedure for the Synthesis of Substituted EGFR Derivatives (28a-d, Scheme 4):

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Example 3
N-(3-(difluoro(2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28a)

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Synthesis of 2,4-dichloro-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidine (2)

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NaH (60%, 46.7 mg, 3.06 mmol) was added to a mixture of 2,4-dichloro-7H-pyrrolo[2,3-d]pyrimidine 1 (575 mg, 3.06 mmol) and SEMCl (561 mg, 3.37 mmol) in THF (5 mL) at 0° C. with stirring. The reaction mixture was allowed to warm to room temperature and stirred for 3 h before quenching with water (5 mL). The mixture was extracted with ethyl acetate (10 mL×3). The organic layers were combined, washed with brine, dried over Na₂SO₄and filtered. The filtrate was concentrated, and the crude was purified by column chromatography (PE/EA=20/1) to give 2 (520 mg, yield 53.4%, M+H⁺=319.27) as pale yellow solid.

Synthesis of (2-chloro-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)(3-nitrophenyl)methanone (22)

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Compound 21 (517 mg, 1.51 mmol) was dissolved in DMF (3 mL) at 0° C. and treated sequentially with 3-nitrobenzaldehyde (225 mg, 1.5 mmol), and 1, 3-dimethylimidazolium iodide (129 mg, 0.58 mmol). Sodium hydride (100 mg, 60%, 2.5 mmol) was added slowly and then the mixture was warmed to room temperature. After being stirred for 4 h, the reaction was quenched with water and extracted with ethyl acetate. The layers were separated. The organic layer was dried over Na₂SO₄, and the solvent was removed under reduced pressure. The crude was purified by chromatography on silica gel using hexanes/ethyl acetate 75:25 as an eluant. The title compound 22 (320 mg, yield 50%, M+H⁺=433.1) was isolated as yellow solid.

Synthesis of 2-chloro-4-(difluoro(3-nitrophenyl)methyl)-7-((2-(trimethylsilypethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidine (23)

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A round bottom flask equipped with a Teflon-coated magnetic stir bar was charged with 22 (320 mg, 0.74 mmol) in DCM (2 mL). The flask was capped with a rubber septum and purged with argon. (Diethylamino)sulfur trifluoride (600 mg, 3.72 mmol) was added by syringe. The mixture was stirred at room temperature overnight. The reaction was carefully poured into ice-water and the resulting mixture was extracted with DCM. The combined organic layers was washed with brine and dried over Na₂SO₄. After filtration and removal of solvent under reduced pressure, the crude was purified by flash chromatography to afford the title compound 23 (270 mg, yield 80%, M+H⁺=455.1) as yellow solid.

Synthesis of 4-(difluoro(3-nitrophenyl)methyl)-N-(4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (24a)

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This title compound 24a (yield 76% from 23, M+H⁺=610.3) was prepared according to the synthetic procedure of 11, but starting from compound 23 and 4-(4-Methylpiperazino) aniline.

Synthesis of 4-((3-aminophenyl)difluoromethyl)-N-(4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (25a)

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24a (200 mg, 0.33 mmol) was dissolved in THF (5 mL) and water (5 mL) was added. Iron powder (190 mg, 3.4 mmol) and saturated ammonium chloride aqueous (2.5 mL) were then added. The resulting mixture was heated to reflux for 3 hours. The reaction mixture was cooled to room temperature and filtered through celite. The solvent was removed under reduced pressure. The resulting residue was basified with sodium bicarbonate and extracted with ethyl acetate. The organic layer was separated, dried over anhydrous sodium sulfate, concentrated, and purified using flash chromatography with 20:1 dichloromethane-methanol to afford the title compound 25a (179 mg, M+H⁺=578) as yellow solid.

Synthesis of N-(3-(2-(4-(4-methylpiperazin-1-yl)phenylamino)-7-((2-(trimethylsilypethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yloxy)phenyl)acrylamide (26a)

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Acryloyl chloride (33.8 mg, 0.374 mmol) was added dropwise to a solution of 25a (180.8 mg, 0.312 mmol) and diisopropylethylamine (55 mg, 0.426 mmol) in methylene chloride (3 mL) at 0° C. The reaction was stirred for 1 h. And then water was added to quench the reaction. The organic layer was washed with water, brine, dried over Na₂SO₄. After filtration and removal of solvent under reduced pressure, the crude was purified by flash chromatography (DCM/MeOH=20/1) afford the title compound 26a (154 mg, yield 78%, M+H⁺=634.3) as white solid.

Synthesis of N-(3-(difluoro(7-(hydroxymethyl)-2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (27a)

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Compound 26a (125 mg, 0.197 mmol) in CH₂Cl₂(3 mL) and trifluoroacetic acid (1 mL) was stirred at room temperature for 3 h. TLC indicated all starting material was consumed. Saturated NaHCO₃solution was then added to the mixture at 0° C. to neutralize the excess acid. The mixture was extracted with DCM immediately. The organic layer was separated and washed with water, brine, dried over Na₂SO₄and filtered. The filtrate was concentrated, and the crude was purified by column chromatography (DCM/MeOH=20/1) to give 27a (78.8 mg, yield 75%, M+H⁺=534.2) as white solid.

Synthesis of N-(3-(difluoro(2-(4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28a)

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A solution of compound 27a (100 mg, 0.187 mmol) in methanol (2 mL) was saturated with ammonia. The reaction mixture was stirred overnight at room temperature. LC-MS indicated all starting material was consumed. The mixture was concentrated and the crude was purified by column chromatography (DCM/MeOH=20/1) to give 28a (66.8 mg, yield 71%, M+H⁺=504.2) as pale yellow solid.

Example 4
N-(3-(difluoro(2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28b)

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Synthesis of 4-(difluoro(3-nitrophenyl)methyl)-N-(6-(4-methylpiperazin-1-yl)pyridin-3-yl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3d]pyrimidin-2-amine (24b)

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The title compound 24b (yield 76% from 10, M+H⁺=611.3) was prepared according to the synthetic procedure of 24a, but starting from compound 23 and 3-amino-6-(4-Methyl-1-piperazinyl) pyridine hydrochloride.

Synthesis of 4-((3-aminophenyl)difluoromethyl)-N-(6-(4-methylpiperazin-1-yl)pyridin-3-yl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3d]pyrimidin-2-amine (25b)

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The title compound 25b (yield 71% from 24b, M+H⁺=581.3) was prepared according to the synthetic procedure of 25a, starting from 24b.

Synthesis of N-(3-(difluoro(2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7-((2-(trimethylsilypethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (26b)

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The title compound 26b (yield 75% from 25b, M+H⁺=635.3) was prepared according to the synthetic procedure of 26a, starting from 25b.

Synthesis of N-(3-(difluoro(7-(hydroxymethyl)-2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (27b)

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The title compound 27b (yield 70% from 26b, M+H⁺=535.2) was prepared according to the procedure of 27a, starting from 26b.

Synthesis of N-(3-(difluoro(2-(6-(4-methylpiperazin-1-yl)pyridin-3-ylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28b)

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The title compound 28b (yield 75% from 27b, M+H⁺=505.2) was prepared according to the synthetic procedure of 28a, starting from 27b.

Example 5
N-(3-(difluoro(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28c)

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Synthesis of 4-(difluoro(3-nitrophenyl)methyl)-N-(3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (24c)

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The title compound 24c (yield 75% from 23, M+H⁺=628.3) was prepared according to the synthetic procedure of 24a, starting from compound 23 and 3-Fluoro-4-(4-methylpiperazin-1-yl)aniline.

Synthesis of 4-((3-aminophenyl)difluoromethyl)-N-(3-fluoro-4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (25c)

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The title compound 25c (yield 78% from 24c, M+H⁺=598.3) was prepared according to the synthetic procedure of 25a, starting from 24b.

Synthesis of N-(3-(difluoro(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3d]pyrimidin-4-yl)methyl)phenyl)acrylamide (26c)

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The title compound 26c (yield 76% from 25c, M+H⁺=652.3) was prepared according to the synthetic procedure of 26a, starting from 25c.

Synthesis of N-(3-(difluoro(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7-(hydroxymethyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (27c)

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The title compound 27c (yield 78% from 26c, M+H⁺=552.2) was prepared according to the synthetic procedure of 27a, staring from 26c.

Synthesis of N-(3-(difluoro(2-(3-fluoro-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28c)

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The title compound 28c (yield 65% from 27c, M+H⁺=521.2) was prepared according to the synthetic procedure of 28a, starting from 27c.

Example 6
N-(3-(difluoro(2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenypacrylamide (28d)

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Synthesis of 4-(difluoro(3-nitrophenyl)methyl)-N-(2-methoxy-4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (24d)

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The title compound 24d (yield 81% from 23, M+H⁺=640.3) was prepared according to the synthetic procedure of 24a, starting from compound 23 and 3-methoxy-4-(4-methylpiperazin-1-yl) aniline.

Synthesis of 4-((3-aminophenyl)difluoromethyl)-N-(2-methoxy-4-(4-methylpiperazin-1-yl)phenyl)-7-((2-(trimethylsilypethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-2-amine (25d)

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This title compound 25d (yield 75% from 24d, M+H⁺=610.3) was prepared according to the synthetic procedure of 25a, starting from 24d.

Synthesis of N-(3-(difluoro(2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-7-((2-(trimethylsilyl)ethoxy)methyl)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (26d)

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The title compound 26d (yield 78% from 25d, M+H⁺=664.3) was prepared according to the synthetic procedure of 26a, starting from 25d.

Synthesis of N-(3-(difluoro(7-(hydroxymethyl)-2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (27d)

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The title compound 27d (yield 78% from 26d, M+H⁺=564.2) was prepared according to the synthetic procedure of 27a, starting from 26d.

Synthesis of N-(3-(difluoro(2-(2-methoxy-4-(4-methylpiperazin-1-yl)phenylamino)-7H-pyrrolo[2,3-d]pyrimidin-4-yl)methyl)phenyl)acrylamide (28d)

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The title compound 28d (yield 75% from 27d, M+H⁺=534.2) was prepared according to the synthetic procedure of 28a, starting from 27d.

The present disclosure provides compounds, as shown below.

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The present disclosure also provides compounds, as shown below.

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The present disclosure also provides compounds, as shown below.

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The present disclosure also provides compounds, as shown below.

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The present disclosure also provides compounds, as shown below.

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Formulations

Any suitable formulation of the compounds described herein can be prepared. See generally, Remington's Pharmaceutical Sciences, (2000) Hoover, J. E. editor, 20 th edition, Lippincott Williams and Wilkins Publishing Company, Easton, Pa., pages 780-857. A formulation is selected to be suitable for an appropriate route of administration. In cases where compounds are sufficiently basic or acidic to form stable nontoxic acid or base salts, administration of the compounds as salts may be appropriate. Examples of pharmaceutically acceptable salts are organic acid addition salts formed with acids that form a physiological acceptable anion, for example, tosylate, methanesulfonate, acetate, citrate, malonate, tartarate, succinate, benzoate, ascorbate, α-ketoglutarate, and α-glycerophosphate. Suitable inorganic salts may also be formed, including hydrochloride, sulfate, nitrate, bicarbonate, and carbonate salts. Pharmaceutically acceptable salts are obtained using standard procedures well known in the art, for example, by a sufficiently basic compound such as an amine with a suitable acid, affording a physiologically acceptable anion. Alkali metal (e.g., sodium, potassium or lithium) or alkaline earth metal (e.g., calcium) salts of carboxylic acids also are made.

Where contemplated compounds are administered in a pharmacological composition, it is contemplated that the compounds can be formulated in admixture with a pharmaceutically acceptable excipient and/or carrier. For example, contemplated compounds can be administered orally as neutral compounds or as pharmaceutically acceptable salts, or intravenously in a physiological saline solution. Conventional buffers such as phosphates, bicarbonates or citrates can be used for this purpose. Of course, one of ordinary skill in the art may modify the formulations within the teachings of the specification to provide numerous formulations for a particular route of administration. In particular, contemplated compounds may be modified to render them more soluble in water or other vehicle, which for example, may be easily accomplished with minor modifications (salt formulation, esterification, etc.) that are well within the ordinary skill in the art. It is also well within the ordinary skill of the art to modify the route of administration and dosage regimen of a particular compound in order to manage the pharmacokinetics of the present compounds for maximum beneficial effect in a patient.

The compounds having formula I-II as described herein are generally soluble in organic solvents such as chloroform, dichloromethane, ethyl acetate, ethanol, methanol, isopropanol, acetonitrile, glycerol, N,N-dimethylformamide, N,N-dimetheylaceatmide, dimethylsulfoxide, etc. In one embodiment, the present invention provides formulations prepared by mixing a compound having formula I-II with a pharmaceutically acceptable carrier. In one aspect, the formulation may be prepared using a method comprising: a) dissolving a described compound in a water-soluble organic solvent, a non-ionic solvent, a water-soluble lipid, a cyclodextrin, a vitamin such as tocopherol, a fatty acid, a fatty acid ester, a phospholipid, or a combination thereof, to provide a solution; and b) adding saline or a buffer containing 1-10% carbohydrate solution. In one example, the carbohydrate comprises dextrose. The pharmaceutical compositions obtained using the present methods are stable and useful for animal and clinical applications.

Illustrative examples of water soluble organic solvents for use in the present methods include and are not limited to polyethylene glycol (PEG), alcohols, acetonitrile, N-methyl-2-pyrrolidone, N,N-dimethylformamide, N,N-dimethylacetamide, dimethyl sulfoxide, or a combination thereof. Examples of alcohols include but are not limited to methanol, ethanol, isopropanol, glycerol, or propylene glycol.

Illustrative examples of water soluble non-ionic surfactants for use in the present methods include and are not limited to CREMOPHOR® EL, polyethylene glycol modified CREMOPHOR® (polyoxyethyleneglyceroltriricinoleat 35), hydrogenated CREMOPHOR® RH40, hydrogenated CREMOPHOR® RH60, PEG-succinate, polysorbate 20, polysorbate 80, SOLUTOL® HS (polyethylene glycol 660 12-hydroxystearate), sorbitan monooleate, poloxamer, LABRAFIL® (ethoxylated persic oil), LABRASOL® (capryl-caproyl macrogol-8-glyceride), GELUCIRE® (glycerol ester), SOFTIGEN® (PEG 6 caprylic glyceride), glycerin, glycol-polysorbate, or a combination thereof.

Illustrative examples of water soluble lipids for use in the present methods include but are not limited to vegetable oils, triglycerides, plant oils, or a combination thereof. Examples of lipid oils include but are not limited to castor oil, polyoxyl castor oil, corn oil, olive oil, cottonseed oil, peanut oil, peppermint oil, safflower oil, sesame oil, soybean oil, hydrogenated vegetable oil, hydrogenated soybean oil, a triglyceride of coconut oil, palm seed oil, and hydrogenated forms thereof, or a combination thereof.

Illustrative examples of fatty acids and fatty acid esters for use in the present methods include but are not limited to oleic acid, monoglycerides, diglycerides, a mono- or di-fatty acid ester of PEG, or a combination thereof.

Illustrative examples of cyclodextrins for use in the present methods include but are not limited to alpha-cyclodextrin, beta-cyclodextrin, hydroxypropyl-beta-cyclodextrin, or sulfobutyl ether-beta-cyclodextrin.

Illustrative examples of phospholipids for use in the present methods include but are not limited to soy phosphatidylcholine, or distearoyl phosphatidylglycerol, and hydrogenated forms thereof, or a combination thereof.

One of ordinary skill in the art may modify the formulations within the teachings of the specification to provide numerous formulations for a particular route of administration. In particular, the compounds may be modified to render them more soluble in water or other vehicle. It is also well within the ordinary skill of the art to modify the route of administration and dosage regimen of a particular compound in order to manage the pharmacokinetics of the present compounds for maximum beneficial effect in a patient.

Drug Combinations

The methods of the embodiments comprise administering an effective amount of at least one compound of the embodiments; optionally the compound may be administered in combination with one or more additional therapeutic agents, particularly therapeutic agents known to be useful for treating a proliferative disorder or cancer afflicting the subject.

The additional active ingredients may be administered in a separate pharmaceutical composition from a compound of the embodiments or may be included with a compound of the embodiments in a single pharmaceutical composition. The additional active ingredients may be administered simultaneously with, prior to, or after administration of a compound of the embodiments.

Methods of Using the Invented Compounds and Pharmaceutical Compositions Thereof

The present invention also provides pharmaceutical compositions for the treatment of a cell proliferative disorder, comprising any compound having formula I-XI,

To practice the method of the present invention, compounds having formula and pharmaceutical compositions thereof may be administered orally, parenterally, by inhalation, topically, rectally, nasally, buccally, vaginally, via an implanted reservoir, or other drug administration methods. The term “parenteral” as used herein includes subcutaneous, intracutaneous, intravenous, intramuscular, intraarticular, intraarterial, intrasynovial, intrastemal, intrathecal, intralesional and intracranial injection or infusion techniques.

A sterile injectable composition, such as a sterile injectable aqueous or oleaginous suspension, may be formulated according to techniques known in the art using suitable dispersing or wetting agents and suspending agents. The sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally acceptable diluent or solvent. Among the acceptable vehicles and solvents that may be employed include mannitol, water, Ringer's solution and isotonic sodium chloride solution. Suitable carriers and other pharmaceutical composition components are typically sterile.

In addition, sterile, fixed oils are conventionally employed as a solvent or suspending medium (e.g., synthetic mono- or diglycerides). Fatty acids, such as oleic acid and its glyceride derivatives, are useful in the preparation of injectables, as are pharmaceutically acceptable oils, such as olive oil or castor oil, especially in their polyoxyethylated versions. These oil solutions or suspensions can also contain a long-chain alcohol diluent or dispersant, or carboxymethyl cellulose or similar dispersing agents. Various emulsifying agents or bioavailability enhancers which are commonly used in the manufacture of pharmaceutically acceptable solid, liquid, or other dosage forms can also be used for the purpose of formulation.

A composition for oral administration may be any orally acceptable dosage form including, but not limited to, tablets, capsules, emulsions and aqueous suspensions, dispersions and solutions. In the case of tablets for oral use, commonly used carriers include lactose and corn starch. Lubricating agents, such as magnesium stearate, can also be added. For oral administration in a capsule form, useful diluents include lactose and dried corn starch. When aqueous suspensions or emulsions are administered orally, the active ingredient can be suspended or dissolved in an oily phase combined with emulsifying or suspending agents. If needed, certain sweetening, flavoring, or coloring agents can be added. A nasal aerosol or inhalation compositions can be prepared according to techniques well-known in the art of pharmaceutical formulation and can be prepared as solutions in, for example saline, employing suitable preservatives (for example, benzyl alcohol), absorption promoters to enhance bioavailability, and/or other solubilizing or dispersing agents known in the art.

In addition, the compounds having formula I-XI may be administered alone or in combination with other anticancer agents for the treatment of various cancers or conditions. Combination therapies according to the present invention comprise the administration of at least one compound of the present invention or a functional derivative thereof and at least one other pharmaceutically active ingredient. The active ingredient(s) and pharmaceutically active agents may be administered separately or together. The amounts of the active ingredient(s) and pharmaceutically active agent(s) and the relative timings of administration will be selected in order to achieve the desired combined therapeutic effect.

Biological Screening and Anticancer Activity:

Some assays and examples demonstrating the anti-cancer effects of the compounds of the invention are described as below.

In Vitro Cell-based Screening Using Real-time Cell Electronic Sensing (RT-CES) System

The heterocyclic compounds in the present invention are developed for the anticancer activities for cancer cells with certain molecular targets, i.e., EGFR (epidermal growth factor receptor). The anticancer efficacy of these heterocyclic compounds and their analogues described above may be preliminarily screened in vitro using a penal of EGFR cancer cell lines by real time electronic cell sensing (RT-CES) system from ACEA Biosciences, Inc. (or xCELLigence system from Roche Applied Sciences/ACEA Biosciences Inc.), which provides dynamic cell response information after exposing to an anticancer agent.

The details of this cell electronic sensing technology, called real-time cell electronic sensing (RT-CES®) and associated devices, systems and methods of use are described in U.S. Pat. Nos. 7,732,127; 7,192,752; 7,459,303; 7,468,255; 7,470,533; 7,560,269; U.S. provisional application No. 60/397,749, filed on Jul. 20, 2002; U.S. provisional application No. 60/435,400, filed on Dec. 20, 2002; U.S. Provisional application 60/469,572, filed on May 9, 2003, PCT application number PCT/US03/22557, filed on Jul. 18, 2003; PCT application number PCT/US03/22537, filed on Jul. 18, 2003; PCT application number PCT/US04/37696, filed on Nov. 12, 2004; PCT application number PCT/US05/04481, filed on Feb. 9, 2005; U.S. patent application Ser. No. 10/705,447, filed on Nov. 10, 2003; U.S. patent application Ser. No. 10/705,615, filed on Nov. 10, 2003; U.S. patent application Ser. No. 10/987,732, filed on Nov. 12, 2004; U.S. patent application Ser. No. 11/055,639, filed on Feb. 9, 2005, each of which is incorporated by reference. Additional details of RT-CES technology is further disclosed in U.S. provisional application No. 60/519,567, filed on Nov. 12, 2003, and U.S. provisional application No. 60/542,927, filed on Feb. 9, 2004, U.S. provisional application No. 60/548,713, filed on Feb. 27, 2004, U.S. provisional application No. 60/598,608, filed on Aug. 4, 2004; U.S. provisional application No. 60/598,609, filed on Aug. 4, 2004; U.S. provisional application No. 60/613,749, filed on Sep. 27, 2004; U.S. provisional application No. 60/613,872, filed on Sep. 27, 2004; U.S. provisional application No. 60/614,601, filed on Sep. 29, 2004; U.S. provisional application No. 60/630,071, filed on Nov. 22, 2004; U.S. provisional application No. 60/630,131, filed on Nov. 22, 2004, each of which is incorporated herein by reference.

For measurement of cell-substrate or cell-electrode impedance using RT-CES technology, microelectrodes having appropriate geometries are fabricated onto the bottom surfaces of microtiter plate or similar device, facing into the wells. Cells are introduced into the wells of the devices, and make contact to and attach to the electrode surfaces. The presence, absence or change of properties of cells affects the electronic and ionic passage on the electrode sensor surfaces. Measuring the impedance between or among electrodes provides important information about biological status of cells present on the sensors. When there are changes to the biological status of the cells analogue, electronic readout signals are measured automatically and in real time, and are converted to digital signals for processing and analysis.

In a RT-CES system, a cell index is automatically derived and provided based on measured electrode impedance values. The cell index obtained for a given well reflects: 1) how many cells are attached to the electrode surfaces in this well; 2) how well cells are attached to the electrode surfaces in this well. Thus, the more the cells of same type in similar physiological conditions attach the electrode surfaces, the larger the cell index. And, the better the cells attach to the electrode surfaces (e.g., the cells spread-out more to have larger contact areas, or the cells attach tighter to electrode surfaces), the larger the cell index. We have found that the cMet-addictive cell lines would produce a transient impedance response profile when treated with positive-control EGFR (epidermal growth factor receptor) inhibitors.

Through the use of the RT-CES system, the heterocyclic compounds described in the examples above have been shown to produce a similar cell response impedance profile on RT-CES system to that generated by positive control inhibitors. In addition, these compounds have been shown to inhibit EGFR (epidermal growth factor receptor)-induced cell migration in several cell lines. In addition, these compounds have shown no or negligible effects when they were used to treat non-cMet addictive cancer cell lines.

The RT-CES system (or xCELLigence RTCA system) comprises three components, an electronic sensor analyzer, a device station and 16× or 96× microtiter plate devices (i.e. E-Plate 16 or E-Plate 96). Microelectrode sensor array was fabricated on glass slides with lithographical microfabrication methods and the electrode-containing slides are assembled to plastic trays to form electrode-containing wells. Each 16× (or 96×) microtiter plate device used in RT-CES system comprises up to 16 (or 96) such electrode-containing wells. The device station receives the 16× or 96× microtiter plate devices and is capable of electronically switching any one of the wells to the sensor analyzer for impedance measurement. In operation, the devices with cells cultured in the wells are placed into a device station (xCELLigence RTCA SP station or RT-CES SP station) that is located inside an incubator. Electrical cables connect the device station to the sensor analyzer (xCELLigence RTCA analyzer or RT-CES analyzer). Under the RT-CES or xCELLigence RTCA software control, the sensor analyzer can automatically select wells to be measured and continuously conduct impedance measurements. The impedance data from the analyzer is transferred to a computer, analyzed and processed by the integrated software.

Impedance measured between electrodes in an individual well depends on electrode geometry, ionic concentration in the well and whether there are cells attached to the electrodes. In the absence of the cells, electrode impedance is mainly determined by the ion environment both at the electrode/solution interface and in the bulk solution. In the presence of the cells, cells attached to the electrode sensor surfaces will alter the local ionic environment at the electrode/solution interface, leading to an increase in the impedance. The more cells there are on the electrodes, the larger the increase in cell-electrode impedance. Furthermore, the impedance change also depends on cell morphology and the extent to which cells attach to the electrodes.

To quantify cell status based on the measured cell-electrode impedance, a parameter termed Cell Index is derived, according to

$C I = \max_{i = 1, \dots, N} (\frac{R_{cell} (f_{i})}{R_{b} (f_{i})} - 1)$

where R_b(ƒ) and R_cell(ƒ) are the frequency dependent electrode resistances (a component of impedance) without cells or with cell present, respectively. N is the number of the frequency points at which the impedance is measured. Thus, Cell Index is a quantitative measure of the status of the cells in an electrode-containing well. Under the same physiological conditions, more cells attached on to the electrodes leads to larger R_cell(ƒ) value, leading to a larger value for Cell Index. Furthermore, for the same number of cells present in the well, a change in the cell status such as morphology will lead to a change in the Cell Index. For example, an increase in cell adhesion or cell spreading leads to larger cell-electrode contact area which will lead to an increase in R_cell(ƒ) and thus a larger value for Cell Index. The Cell Index may also be calculated using a formula different from the one described here. Other methods for calculating the Cell Index based on impedance measurement can be found in U.S. Pat. Nos. 7,732,127; 7,192,752; 7,459,303; 7,468,255; 7,470,533; 7,560,269; PCT application number PCT/US04/37696, fined on Nov. 12, 2004, PCT application number PCT/US05/04481, filed on Feb. 9, 2005, U.S. patent application Ser. No. 10/987,732, filed on Nov. 12, 2004, and U.S. patent application Ser. No. 11/055,639, filed on Feb. 9, 2005.

Control Compounds for Testing

The following compounds can be used as comparison compounds for testing the compounds in the present disclosure.

WZ4002 is an irreversible inhibitor against EGFR T790M. (Nature 2009 Dec. 24; 462(7276): 1070-1074) The structure of WZ4002 is shown below:

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BIBW2992 (Afatinib) is an irreversible EGFR/HER2 inhibitor. (Oncogene 2008; 27:4702-4711) The structure of BIBW2992 is shown below:

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Erlotinib is a reversible tyrosine kinase inhibitor which acts on EGFR. (Drugs 2000, 60 Suppl 1: 15-23; discussion 41-2.) The structure of erlotinib is shown below:

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Bioactivity of Heterocyclic Compounds on EGFR Mutated Cell Lines as Determined using Real-time Cell Electronic Sensing (RT-CES) System

Material and Methods

Cell Culture and Reagents

All cell lines were obtained from the American Type Culture Collection and were maintained at 37° C. with 5% CO2, in media supplemented with 10% fetal bovine serum and 1% L-glutamine-penicillin-streptomycin. H1975, HCC827 and A549 cells were cultured with RPMI 1640 media. A431 and Hela cells were maintained in Dulbecco's Modification of Eagle's Medium. EGF (R&D), EGF inhibitors were resuspended and stored according to the manufacturers' instructions.

EGF Stimulation Assay

Impedance measurements were taken using the xCelligence RTCA system (Roche Applied Science) instrument using the E-plates 96-well device from the same company. Cells were trypsinized and seeded on a 96-well E-plate at a density of 15000 cells per well in a volume of 0.1 ml. Cells were allowed to attach and proliferate overnight. Prior to compound treatment, H1975 cells were serum starved in RPMI-1640 for a total of 4 h. Following serum starvation, the cells were pretreated with compounds or vehicle for 40 min and then stimulated with EGF at 30 ng/mL. Throughout the experimental process, the cells were continually monitored, and the changes in impedance were acquired with the xCelligence RTCA system. After EGF treatment, data acquisition was done every minute for up to 2 h. For each cell type the optimal cell concentration was chosen based on their respective proliferation pattern.

Cytotoxicity Assays

Cells were seeded in 96-well E-Plate devices, and attachment, spreading, and proliferation were monitored using the xCelligence RTCA system. After 20 h of RTCA profiling, the cells were treated with the indicated compounds prediluted in growth media to a final maximal DMSO concentration of 0.1%, and the responses were measured at 30-min intervals for 3 days. For each cell type the optimal cell concentration was chosen based on their respective proliferation pattern.

Results

The results are shown in Table 1 below and in FIGS. 1-5.

Assay Results Summary

TABLE 1

IC₅₀(uM)

13a
13b
19
WZ4002
BIBW2992
Erlotinib

H1975 cell viability
Active
Weak
Active
Active

assay

activity

A549 cell viability
>20
>20
>6.7
>20

assay

HeLa cell viability
>2.2
>20
>6.7
>6.7

assay

H1975 EGF
1.7
1.9
1.1
1.1

stimulation assay

A431 stimulation
2.4
4.1
0.97
0.817
0.006
0.015

assay

ELISA assay

H1975 and A431 cells were seeded onto each well of a 96-well plate at a density of 4×10⁴cells per well. After 24 hours of growth in serum-containing media, cells were treated with test compound in serum-free medium for 2 hours. A431 cells were stimulated with 30 ng/mL EGF during the last 15 minutes of compound treatment. Cells were washed with ice cold PBS before extraction with 100 μl per well cell lysis buffer. Phosphorylation of EGFR was measured using a sandwich ELISA assay with the pair of phospho-specific EGFR (pY1068) and total EGFR antibodies. The results are shown in Table 2 below.

Results

TABLE 2

IC₅₀(μM)
IC₅₀(μM)

Compound
H1975 cell
A431 cell
Selectivity

#
(T790M/L858R)
(WT)
(WT/T790M)

13a
0.170
13.7
82

13b
0.340
10.8
32

19
0.029
2.46
85

31
0.030
>20
>657

63
0.030
28.8
974

27a
0.058
23.4
403

28a
0.026
2.73
107

28b
0.026
12
466

28c
0.080
8.05
100

28d
0.158
>20
>127

29
1.560
>20
>12.8

32
1.300
>20
>15.4

33
0.099
7.17
72.6

34
0.038
4.37
113

35
0.062
3.61
58.4

36
0.093
2.17
23.3

37
0.106
11.1
105

38
0.341
3.81
11.2

39
0.041
0.71
17.3

40
1.740
25.3
14.6

42
1.630
11.8
7.2

Embodiments

The present disclosure provides for the following embodiments.

Embodiment A1. A compound of Formula I:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO₂, C1-C6 alkyl or C1-C6 haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

R¹and R²is independently selected from H, OH, Halo, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Y is H, OH, Halo, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Z is H, OH, Halo, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

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A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

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R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

R¹¹is halogen or C_rC₆alkyl; and

each R—¹¹is independently hydrogen, C_rC₃alkyl, C,—C₃alkoxy, C,—C₃haloalkyl, or C₁-C₃haloalkoxy;

R¹²is CH₂or C(O);

X^2bis O, S, NH, or NR;

or a pharmaceutically acceptable salt thereof.

Embodiment A2. The compound of embodiment A1, wherein X is C1-C6 haloalkyl.

Embodiment A3. The compound of embodiment A2, wherein CF₂, CHF, CHCF₃or C(CF₃)₂.

Embodiment A4. A pharmaceutical composition comprising a compound of any one of the embodiments A1-A3 admixed with at least one pharmaceutically acceptable carrier or excipient.

Embodiment A5. The pharmaceutical composition of embodiment A4, which comprises at least one sterile pharmaceutically acceptable carrier or excipient.

Embodiment A6. The pharmaceutical composition of embodiment A4, which comprises at least two pharmaceutically acceptable carriers and/or excipients.

Embodiment A7. A compound according to any one of embodiments A1-A6 for use in therapy.

Embodiment A8. The compound of embodiment A7, wherein the use in therapy is a use to treat cancer.

Embodiment A9. The compound of embodiment A8, wherein the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

Embodiment A10. A method to treat cancer, which comprises administering to a subject in need thereof an effective amount of a compound according to any one of embodiments A1-A6.

Embodiment A11. The method of embodiment A10, wherein the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

Embodiment A12. Use of a compound according to any one of embodiments A1-A6 for the manufacture of a medicament.

Embodiment A13. The use of embodiment A12, wherein the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

The present disclosure also provides for the following embodiments.

Embodiment B1. A compound of Formula Ia:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO₂, C₁-C₆alkyl or C₁-C₆haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

R¹and R²are each independently selected from H, C₁-C₆alkyl, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, SO₂R, PO₃R₂, —POR₂, CR(COOR)₂, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, —C(O)NR₂, sulfonyl, sulfonylamino, aminosulfonyl, acylamino, alkoxycarbonylamino, and aminocarbonylamino;

Y is H, OH, halogen, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

embedded image

R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

X^2bis O, S, NH, or NR;

Z is H, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

embedded image

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B2. The compound of embodiment B1, wherein the compound is Formula Ib:

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where

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in a ring indicates the ring is an aromatic or heteroaromatic ring;

X is O, S, C═O, —NR, SO, SO₂, C₁-C₆alkyl or C₁-C₆haloalkyl;

W₁, W₂, W₃, W₄, W₅, W₆, W₇and W₈are each independently absent, N, NH, NR¹, O, S, CH, or CR²;

not more than one of them is absent;

Y is H, OH, halogen, NHR, NRR, NHC(═O)R, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, or CR(COOR)₂;

Z is H, OH, halogen, NHR, NRR, OR, SR, COOR, C(═O)R, CN, CF₃, OCF₃, NO₂, OC(O)R, SO₃R, PO₃R₂, CR(COOR)₂, or

embedded image

A is NH, S, SO, SO₂, SO₂NH, SO₂NR³, NHSO₂, NR¹, CR¹R², NR¹, or O;

embedded image

R¹⁷is N, CH, or CR³⁰;

R¹⁸is O or S;

each R³⁰is independently selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C_l-C₆alkoxy, C_l-C₆haloalkoxy, C_l-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, and substituted amino; and

X^2bis O, S, NH, or NR;

or a pharmaceutically acceptable salt thereof.

Embodiment B3. The compound of embodiment B2, wherein X is C₁-C₆haloalkyl.

Embodiment B4. The compound of embodiment B3, wherein X is selected from CF₂, CHF, CHCF₃or C(CF₃)₂.

Embodiment B5. The compound of embodiment Bl, wherein the compound is Formula Ic:

embedded image

wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

embedded image

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

Embodiment B6. The compound of embodiment B5, wherein the compound is Formula IIa

embedded image

where X is C₁-C₆alkyl, C₁-C₆alkoxy, or halo, wherein the halo is Cl, F, I, or Br.

Embodiment B7. The compound of embodiment B6, wherein halo is F, I, or Br.

Embodiment B8. The compound of embodiment B5, wherein the compound is Formula III:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

Embodiment B9. The compound of embodiment B8, wherein R²⁰is hydrogen, halogen, C₁-C₆alkyl, or C₁-C₆alkoxy.

Embodiment B10. The compound of embodiment B8, wherein R²⁰is hydrogen, fluoro, chloro, C₁-C₆alkyl, or C₁-C₆alkoxy.

Embodiment B11. The compound of embodiment B8, wherein R²⁰is hydrogen, fluoro, iodo, bromo, C₁-C₆alkyl, or C₁-C₆alkoxy.

Embodiment B12. The compound of embodiment B8, wherein R²¹is hydrogen.

Embodiment B13. The compound of embodiment B8, wherein R²³is hydrogen, halogen, or C₁-C₆alkoxy.

Embodiment B14. The compound of embodiment B8, wherein R⁷is C₁-C₃alkyl.

Embodiment B15. The compound of embodiment B8, wherein R³and R⁴are hydrogen.

Embodiment B16. The compound of embodiment B8, wherein at least one of R³and R⁴is C₁-C₆alkyl.

Embodiment B17. The compound of embodiment B8, wherein Q is CH or CR²³.

Embodiment B18. The compound of embodiment B8, wherein Q is N.

Embodiment B19. The compound of embodiment B5, wherein the compound is Formula IV:

embedded image

wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

Embodiment B20. The compound of embodiment B19, wherein R²⁵and R²⁶are hydrogen.

Embodiment B21. The compound of embodiment B19, wherein R²³is hydrogen, halogen, or C₁-C₆alkoxy.

Embodiment B22. The compound of embodiment B19, wherein Q is CH.

Embodiment B23. The compound of embodiment B19, wherein R⁷is C₁-C₃alkyl.

Embodiment B24. The compound of embodiment B19, wherein R³and R⁴are hydrogen.

Embodiment B25. The compound of embodiment B5, wherein the compound is Formula V:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

R⁷is hydrogen or C₁-C₆alkyl;

R²²is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino acylamino, alkoxycarbonylamino, and aminocarbonylamino;

R²³is selected from hydrogen, halogen, C₁-C₆alkyl, C₁-C₆haloalkyl, C₁-C₆alkoxy, C₁-C₆haloalkoxy, C₁-C₆alkenyl, C₁-C₆alkynyl, hydroxy, cyano, nitro, —C(O)R^a, —OC(O)R^a, —C(O)OR^a, —C(O)N(R^a)₂, sulfonyl, sulfonylamino, aminosulfonyl, amino, substituted amino acylamino, alkoxycarbonylamino, and aminocarbonylamino;

each R^ais independently hydrogen or C₁-C₆alkyl; and

Q is CH, CR²³, or N;

or a pharmaceutically acceptable salt thereof.

Embodiment B26. The compound of embodiment B25, wherein R²⁴and R²⁵are hydrogen.

Embodiment B27. The compound of embodiment B25, wherein R²⁶is hydrogen.

Embodiment B28. The compound of embodiment B25, wherein R²⁶is substituted C₁-C₆alkyl, wherein C₁-C₆alkyl is substituted with hydroxy.

Embodiment B29. The compound of embodiment B25, wherein R²⁴, R²⁵and R²⁶are hydrogen.

Embodiment B30. The compound of embodiment B25, wherein R²³is hydrogen, halogen, or C₁-C₆alkoxy.

Embodiment B31. The compound of embodiment B25, wherein Q is CH or CR²³.

Embodiment B32. The compound of embodiment B25, wherein Q is N.

Embodiment B33. The compound of embodiment B25, wherein R⁷is C₁-C₃alkyl.

Embodiment B34. The compound of embodiment B25, wherein R³and R⁴are hydrogen.

Embodiment B35. The compound of embodiment B25, wherein at least one of R³and R⁴is C₁-C₆alkyl.

Embodiment B36. The compound of embodiment B1, wherein the compound is Formula Id:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

embedded image

each R^ais independently hydrogen or C₁-C₆alkyl;

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl; and

n is one or two;

or a pharmaceutically acceptable salt thereof.

Embodiment B37. The compound of embodiment B36, wherein the compound is Formula VI:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or (CH₂)₁₁,N(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B38. The compound of embodiment B36, wherein the compound is Formula VII:

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wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B39. The compound of embodiment B36, wherein the compound is Formula VIII:

embedded image

wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B40. The compound of embodiment B36, wherein the compound is Formula IX:

embedded image

wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B41. The compound of embodiment B36, wherein the compound is Formula X:

embedded image

wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B42. The compound of embodiment B36, wherein the compound is Formula XI:

embedded image

wherein

X is CF₂, O, CH₂S, or NR^b;

R³and R⁴are independently hydrogen, C₁-C₆alkyl, or —(CH₂)_mN(R^a)₂, wherein m is one to 6;

R⁵is hydrogen or C₁-C₆alkyl;

R⁶is hydrogen or C₁-C₆alkyl;

each R^ais independently hydrogen or C₁-C₆alkyl; and

R²⁷and R²⁸are independently hydrogen or C₁-C₆alkyl;

or a pharmaceutically acceptable salt thereof.

Embodiment B43. A pharmaceutical composition comprising a compound of any one of the embodiment B1-B42 admixed with at least one pharmaceutically acceptable carrier or excipient.

Embodiment B44. The pharmaceutical composition of embodiment B43, which comprises at least one sterile pharmaceutically acceptable carrier or excipient.

Embodiment B45. The pharmaceutical composition of embodiment B43, which comprises at least two pharmaceutically acceptable carriers and/or excipients.

Embodiment B46. A compound according to any one of embodiment B1-B42 for use in therapy.

Embodiment B47. The compound of embodiment B46, wherein the use in therapy is a use to treat cancer.

Embodiment B48. The compound of embodiment B47, wherein the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

Embodiment B49. A method to treat cancer, which comprises administering to a subject in need thereof an effective amount of a compound according to any one of embodiment B1-B42.

Embodiment B50. The method of embodiment B49, wherein the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

Embodiment B51. Use of a compound according to any one of embodiment B1-B42 for the manufacture of a medicament.

Embodiment B52. The use of embodiment B51, wherein the cancer is selected from leukemia, lymphoma, lung cancer, colon cancer, CNS cancer, melanoma, ovarian cancer, renal cancer, prostate cancer, breast cancer, head and neck cancers, and pancreatic cancer.

Embodiment B53. A combination for treating and/or preventing cancer in a subject, which combination comprises an effective amount of a compound of any of embodiment B1-B42, or a pharmaceutically acceptable salt thereof, and an effective amount of a second prophylactic or therapeutic agent for treating and/or preventing cancer in a subject.

Embodiment B54. A method for treating and/or preventing cancer in a subject, which methods comprises administering to a subject in need thereof an effective amount of the combination of embodiment B53.

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Number	Date	Country
102083800	Jun 2011	CN
103748096	Apr 2014	CN
104306348	Jan 2015	CN
0132632	May 2001	WO
02083653	Oct 2002	WO
03026664	Apr 2003	WO
2004021979	Mar 2004	WO
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2005084401	Sep 2005	WO
2006009755	Jan 2006	WO
2006014325	Feb 2006	WO
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2007055514	May 2007	WO
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2007103233	Sep 2007	WO
2007126841	Nov 2007	WO
2008073687	Jun 2008	WO
2008094737	Aug 2008	WO
2008150118	Dec 2008	WO
2009017838	Feb 2009	WO
2009020990	Feb 2009	WO
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2009032703	Mar 2009	WO
2009051822	Apr 2009	WO
2009131687	Oct 2009	WO
2009143389	Nov 2009	WO
2009158571	Dec 2009	WO
2010045451	Apr 2010	WO
2010090764	Aug 2010	WO
2010129053	Nov 2010	WO
2011079231	Jun 2011	WO
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2012061299	May 2012	WO
2012061303	May 2012	WO
2012064706	May 2012	WO
2012120048	Sep 2012	WO
2012135801	Oct 2012	WO
2012156437	Nov 2012	WO
2013106792	Jul 2013	WO
2015006754	Jan 2015	WO

	Number	Date	Country
Parent	13740182	Jan 2013	US
Child	17001147		US

Heterocyclic compounds and uses as anticancer agents

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Abstract

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CROSS-REFERENCE TO RELATED APPLICATION

US Referenced Citations (30)

Foreign Referenced Citations (45)

Non-Patent Literature Citations (162)

Related Publications (1)

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