The present invention relates to pyrimidine and pyridine derivatives which demonstrate antibacterial activity, processes for their preparation, pharmaceutical compositions containing them as the active ingredient, to their use as medicaments and to their use in the manufacture of medicaments for use in the treatment of bacterial infections in warm-blooded animals such as humans. In particular, this invention relates to compounds useful for the treatment of bacterial infections in warm-blooded animals such as humans, more particularly to the use of these compounds in the manufacture of medicaments for use in the treatment of bacterial infections in warm-blooded animals such as humans.
The international microbiological community continues to express serious concern that the evolution of antibiotic resistance could result in strains against which currently available antibacterial agents will be ineffective. In general, bacterial pathogens may be classified as either Gram-positive or Gram-negative pathogens. Antibiotic compounds with effective activity against both Gram-positive and Gram-negative pathogens are generally regarded as having a broad spectrum of activity. The compounds of the present invention are regarded as effective against both Gram-positive and certain Gram-negative pathogens.
Gram-positive pathogens, for example Staphylococci, Enterococci, Streptococci and mycobacteria, are particularly important because of the development of resistant strains which are both difficult to treat and difficult to eradicate from the hospital environment once established. Examples of such strains are methicillin resistant staphylococcus aureus (MRSA), methicillin resistant coagulase negative staphylococci (MRCNS), penicillin resistant Streptococcus pneumoniae and multiple resistant Enterococcus faecium.
The preferred clinically effective antibiotic for treatment of last resort of such resistant Gram-positive pathogens is vancomycin. Vancomycin is a glycopeptide and is associated with various toxicities, including nephrotoxicity. Furthermore, and most importantly, antibacterial resistance to vancomycin and other glycopeptides is also appearing. This resistance is increasing at a steady rate rendering these agents less and less effective in the treatment of Gram-positive pathogens. There is also now increasing resistance appearing towards agents such as β-lactams, quinolones and macrolides used for the treatment of upper respiratory tract infections, also caused by certain Gram negative strains including H.influenzae and M.catarrhalis.
Consequently, in order to overcome the threat of widespread multi-drug resistant organisms, there is an on-going need to develop new antibiotics, particularly those with either a novel mechanism of action and/or containing new pharmacophoric groups.
Deoxyribonucleic acid (DNA) gyrase is a member of the type II family of topoisomerases that control the topological state of DNA in cells (Champoux, J. J.; 2001. Ann Rev. Biochem. 70: 369-413). Type II topoisomerases use the free energy from adenosine triphosphate (ATP) hydrolysis to alter the topology of DNA by introducing transient double-stranded breaks in the DNA, catalyzing strand passage through the break and resealing the DNA. DNA gyrase is an essential and conserved enzyme in bacteria and is unique among topoisomerases in its ability to introduce negative supercoils into DNA. The enzyme consists of two subunits, encoded by gyrA and gyrB, forming an A2B2 tetrameric complex. The A subunit of gyrase (GyrA) is involved in DNA breakage and resealing and contains a conserved tyrosine residue that forms the transient covalent link to DNA during strand passage. The B subunit (GyrB) catalyzes the hydrolysis of ATP and interacts with the A subunit to translate the free energy from hydrolysis to the conformational change in the enzyme that enables strand-passage and DNA resealing.
Another conserved and essential type II topoisomerase in bacteria, called topoisomerase IV, is primarily responsible for separating the linked closed circular bacterial chromosomes produced in replication. This enzyme is closely related to DNA gyrase and has a similar tetrameric structure formed from subunits homologous to Gyr A and to Gyr B. The overall sequence identity between gyrase and topoisomerase IV in different bacterial species is high. Therefore, compounds that target bacterial type II topoisomerases have the potential to inhibit two targets in cells, DNA gyrase and topoisomerase IV; as is the case for existing quinolone antibacterials (Maxwell, A. 1997, Trends Microbiol. 5: 102-109).
DNA gyrase is a well-validated target of antibacterials, including the quinolones and the coumarins. The quinolones (e.g. ciprofloxacin) are broad-spectrum antibacterials that inhibit the DNA breakage and reunion activity of the enzyme and trap the GyrA subunit covalently complexed with DNA (Drlica, K., and X. Zhao, 1997, Microbiol. Molec. Biol. Rev. 61: 377-392). Members of this class of antibacterials also inhibit topoisomerase IV and as a result, the primary target of these compounds varies among species. Although the quinolones are successful antibacterials, resistance generated primarily by mutations in the target (DNA gyrase and topoisomerase IV) is becoming an increasing problem in several organisms, including S. aureus and Streptococcus pneumoniae (Hooper, D. C., 2002, The Lancet Infectious Diseases 2: 530-538). In addition, quinolones, as a chemical class, suffer from toxic side effects, including arthropathy that prevents their use in children (Lipsky, B. A. and Baker, C. A., 1999, Clin. Infect. Dis. 28: 352-364). Furthermore, the potential for cardiotoxicity, as predicted by prolongation of the QTc interval, has been cited as a toxicity concern for quinolones.
There are several known natural product inhibitors of DNA gyrase that compete with ATP for binding the GyrB subunit (Maxwell, A. and Lawson, D. M. 2003, Curr. Topics in Med. Chem. 3: 283-303). The coumarins are natural products isolated from Streptomyces spp., examples of which are novobiocin, chlorobiocin and coumermycin A1. Although these compounds are potent inhibitors of DNA gyrase, their therapeutic utility is limited due to toxicity in eukaryotes and poor penetration in Gram-negative bacteria (Maxwell, A. 1997, Trends Microbiol. 5: 102-109). Another natural product class of compounds that targets the GyrB subunit is the cyclothialidines, which are isolated from Streptomyces filipensis (Watanabe, J. et al 1994, J. Antibiot. 47: 32-36). Despite potent activity against DNA gyrase, cyclothialidine is a poor antibacterial agent showing activity only against some eubacterial species (Nakada, N, 1993, Antimicrob. Agents Chemother. 37: 2656-2661).
Synthetic inhibitors that target the B subunit of DNA gyrase and topoisomeraseIV are known in the art. For example, coumarin-containing compounds are described in patent application number WO 99/35155, 5,6-bicyclic heteroaromatic compounds are described in patent application WO 02/060879, and pyrazole compounds are described in patent application WO 01/52845 (US patent U.S. Pat. No. 6,608,087). AstraZeneca has also published certain applications describing anti-bacterial compounds: WO2005/026149, WO2006/087544, WO2006/087548, WO2006/087543, WO2006/092599, WO2006/092608, and WO2007/071965.
We have discovered a new class of compounds which are useful for inhibiting DNA gyrase and/or topoisomerase IV.
In one embodiment, according to the present invention there is provided a compound of formula (I):
or a pharmaceutically acceptable salt thereof, wherein:
X is CH or N;
R1 is hydrogen, a C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-14carbocyclyl, or a heterocyclyl, wherein R1 may be optionally substituted on carbon by one or more R6; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R7; provided that R1 is not a substituted or unsubstituted phenyl;
R2 is hydrogen or a C1-6alkyl; or
R1 and R2, together with the nitrogen to which they are attached, form a heterocyclyl, wherein said heterocyclyl may be optionally substituted on carbon by one or more R8; wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R9;
R3 is a C6-14aryl or a heteroaryl; wherein R3 may be optionally substituted on carbon by one or more R14; and wherein if said heteraryl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heteroaryl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R15; provided that R3 is not an unsubstituted phenyl or an unsubstituted thiophenyl;
R4, for each occurrence, is independently selected from the group consisting of halo, cyano, nitro, hydroxy, C1-6alkyl, C1-6alkoxy, C1-6alkanoyl, carbamoyl, N—C1-6alkylcarbamoyl, N—C1-6alkoxycarbamoyl, N,N-(C1-6alkyl)2carbamoyl, N—(SO2R′)carbamoyl, N—C1-6alkyl, C1-6alkyl-S(O)a—, R17R18N—S(O)1—, C3-14carbocyclyl, and heterocyclyl; or two R4 taken together with the carbon atoms to which they are attached form a C3-14carbocyclyl or a heterocyclyl, wherein each R4 may be optionally substituted on carbon by one or more R16, wherein if either of said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R26; provided that ring B together with —(R4)n is not 3,4,5-trimethoxyphenyl;
n is an integer from 1 to 5;
a is 0, 1, or 2;
R6, R8, and R14, for each occurrence, are each independently selected from the group consisting of hydroxy, halo, cyano, nitro, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, mercapto, C1-6alkoxy, C1-6alkylS(O)a wherein a is 0 to 2, —C(═N—OH)NH2, —C(O)NHNH2, phenoxy, carboxy, oxo, amino, N—C1-6alkylamino, N,N-(C1-6alkyl)2amino, C1-6alkoxycarbonyl, C1-6alkanoyl, C1-6alkanoyloxy, C1-6alkanoylamino, C1-6alkoxycarbonylamino, carbamoyl, N—C1-6alkylcarbamoyl, N—C1-6alkoxycarbamoyl, N,N-(C1-6alkyl)2carbamoyl, N—C1-6alkyl-N-alkoxycarbamoyl, N—(SO2R′)carbamoyl, N—C1-6alkyl-N—(SO2R′)carbamoyl, C1-6alkylsulphonylamino, sulphamoyl, N—(C1-6alkyl)sulphamoyl, N,N—(C1-6alkyl)2sulphamoyl, sulphamoylamino, N—(C1-6alkyl)sulphamoylamino, N,N—(C1-6alkyl)2sulphamoylamino, C3-14carbocyclyl-L- and heterocyclyl-L-; or two R14 taken together with the carbon atoms to which they are attached form a C3-14carbocyclyl or a heterocyclyl; wherein R6, R8, and R14 may be each independently optionally substituted on carbon by one or more R10; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if either of said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R11;
R′ and R″, for each occurrence, are independently selected from the group consisting of C1-6alkyl, C6-14aryl and heterocyclyl, wherein R′ and R″ may be optionally substituted on carbon by one or more R22 and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R23;
R7, R9, R15 and R23, for each occurrence, are each independently selected from the group consisting of C1-6alkyl, C1-6alkoxycarbonyl, C1-6alkanoyl, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl, C3-14carbocyclyl-C(O)—, heterocyclyl-C(O)—, (C1-6alkyl)3silyl, C1-6alkylS(O)a wherein a is 0 to 2, wherein R7, R9, and R15 may be each independently optionally substituted on carbon by one or more R12; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R13;
L, for each occurrence, is independent selected from a direct bond, —O—, —N(R25)—, —C(O)—, —N(R25)C(O)—, —C(O)N(R25)—, —S(O)s—, —SO2N(R25)— or —N(R25)SO2—; wherein R25, for each occurrence, is independently selected from hydrogen or C1-6alkyl and s is 0, 1 or 2;
R10 and R12, for each occurrence, are independently selected from the group consisting of C1-6alkyl, phenyl, halo, cyano, nitro, oxo, carboxy, hydroxy, C1-6alkoxy, C1-6alkoxycarbonyl, amino, N—C1-6alkylamino, N,N—(C1-6alkyl)2amino, C1-6alkanoylamino, C1-6alkylSO2NH—, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl, N—C1-6alkyloxycarbamoyl, C1-6alkylS(O)a wherein a is 0 to 2, and heterocyclyl, wherein said R10 and R12 are independently optionally substituted on carbon by one or more C1-6alkyl and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R13′;
R11, R13, R13′, and R26, for each occurrence, are each independently selected from the group consisting of C1-6alkyl, C1-6alkoxycarbonyl, C1-6alkanoyl, C3-6cycloalkanoyl, carbamoyl, C1-6alkanoyloxy, C1-6alkylS(O)a, aryl S(O)a wherein a is 0 to 2, carboxy, sulphamoyl and urea wherein said R11, R13, R13′, and R26 are independently optionally substituted on carbon by one or more amino, C1-6alkyl, C1-6alkoxy or heterocyclyl;
R16, for each occurrence, is independently, a halo, hydroxy, a C1-6alkyl, or a C1-6alkoxy;
R17 and R18, for each occurrence, are independently hydrogen or a C1-6alkyl; or R17 and R18, together with the nitrogen to which they are attached form a heterocyclyl;
R22, for each occurrence, is independently selected from the group consisting of halo, C1-6alkyl, S(O)aR″ wherein a is 0 to 2, C1-6alkanoyl, C1-6alkanoylamino and heterocyclyl wherein R22 may be optionally substituted on carbon by one or more R24;
R24 is selected from halo, C1-6alkanoylamino, and heterocyclyl;
provided that —NR1R2 is not —NHCH3 or —N(CH3)2.
In another embodiment, according to the present invention there is provided a compound of formula (I):
or a pharmaceutically acceptable salt thereof, wherein:
X is CH or N;
R1 is hydrogen, a C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-14carbocyclyl, or a heterocyclyl, wherein R1 may be optionally substituted on carbon by one or more R6; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R7; provided that R1 is not a substituted or unsubstituted phenyl;
R2 is hydrogen or a C1-6alkyl;
R1 and R2, together with the nitrogen to which they are attached, form a heterocyclyl, wherein said heterocyclyl may be optionally substituted on carbon by one or more R8; wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R9;
R3 is a C6-14aryl or a heteroaryl; wherein R3 may be optionally substituted on carbon by one or more R14; and wherein if said heteraryl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heteroaryl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R15; provided that R3 is not an unsubstituted phenyl or an unsubstituted thiophenyl;
R4, for each occurrence, is independently selected from the group consisting of halo, cyano, nitro, hydroxy, C1-6alkyl, C1-6alkoxy, C1-6alkyl-S(O)a, R17R18N—S(O)a, C3-14carbocyclyl, and heterocyclyl; or two R4 taken together with the carbon atoms to which they are attached form a C3-14carbocyclyl or a heterocyclyl, wherein each R4 may be optionally substituted on carbon by one or more R16; provided that ring B together with —(R4)n is not 3,4,5-trimethoxyphenyl;
n is an integer from 1 to 5;
a is 0, 1, or 2;
R6, R8, and R14, for each occurrence, are each independently selected from the group consisting of hydroxy, halo, cyano, nitro, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, mercapto, C1-6alkoxy, C1-6alkylS(O)a wherein a is 0 to 2, —C(═N—OH)NH2, phenoxy, carboxy, amino, N—C1-6alkylamino, N,N—(C1-6alkyl)2amino, a heterocyclyl, C1-6alkoxycarbonyl, C1-6alkanoyl, C1-6alkanoyloxy, C1-6alkanoylamino, C1-6alkoxycarbonylamino, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl, C1-6alkylsulphonylamino, sulphamoyl, N—(C1-6alkyl)sulphamoyl, N,N—(C1-6alkyl)2sulphamoyl, sulphamoylamino, N—(C1-6alkyl)sulphamoylamino, N,N—(C1-6alkyl)2sulphamoylamino, C3-14carbocyclyl-L- and heterocyclyl-L-; wherein R6, R8, and R14 may be each independently optionally substituted on carbon by one or more R10; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R11;
R7, R9, and R15, for each occurrence, are each independently selected from the group consisting of C1-6alkyl, C1-6alkoxycarbonyl, C1-6alkanoyl, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl, C3-14carbocyclyl-C(O)—, heterocyclyl-C(O)—, (C1-6alkyl)3silyl, C1-6alkylS(O)a wherein a is 0 to 2, wherein R7, R9, and R15 may be each independently optionally substituted on carbon by one or more R12; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R13;
L, for each occurrence, is independent selected from a direct bond, —O—, —N(R25)—, —C(O)—, —N(R25)C(O)—, —C(O)N(R25)—, —S(O)s—, —SO2N(R25)— or —N(R25)SO2—; wherein R25, for each occurrence, is independently selected from hydrogen or C1-6alkyl and s is 0, 1 or 2;
R10 and R12, for each occurrence, are independently selected from the group consisting of C1-6alkyl, phenyl, halo, cyano, nitro, carboxy, hydroxy, C1-6alkoxy, C1-6alkoxycarbonyl, amino, N—C1-6alkylamino, N,N—(C1-6alkyl)2amino, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl and N—C1-6alkyloxycarbamoyl; and
R11 and R13, for each occurrence, are each independently a C1-6alkyl;
R16, for each occurrence, is independently, a halo, hydroxy, a C1-6alkyl, or a C1-6alkoxy;
R17 and R18, for each occurrence, are independently hydrogen or a C1-6alkyl; or R17 and R18, together with the nitrogen to which they are attached form a heterocyclyl;
provided that —NR1R2 is not —NHCH3, —N(CH3)2.
In another embodiment, the invention provides pharmaceutical compositions comprising a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient or carrier.
In another embodiment, the invention provides a method of inhibiting bacterial DNA gyrase and/or bacterial topoisomerase IV in a warm-blooded animal in need of such treatment, comprising administering to the animal an effective amount of a compound represented by formula (I), or a pharmaceutically acceptable salt thereof. In a particular embodiment, the warm-blooded animal is a human.
In another embodiment, the invention provides a method of producing an antibacterial effect in a warm-blooded animal in need of such treatment, comprising administering to the animal an effective amount of a compound represented by formula (I), or a pharmaceutically acceptable salt thereof. In a particular embodiment, the warm-blooded animal is a human.
In another embodiment, the invention provides a method of treating a bacterial infection in a warm-blooded animal in need thereof, comprising administering to the animal an effective amount of a compound represented by formula (I), or a pharmaceutically acceptable salt thereof. In a particular embodiment, the warm-blooded animal is a human. In one embodiment, the bacterial infection is selected from the group consisting of community-acquired pneumoniae, hospital-acquired pneumoniae, skin and skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections and infections caused by drug resistant bacteria such as Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococci. In a particular embodiment, the warm-blooded animal is a human.
In another embodiment, the invention provides compounds of formula (I) or a pharmaceutically acceptable salt thereof, for use as a medicament.
In another embodiment, the invention provides the use of a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for use in the production of an antibacterial effect in a warm-blooded animal. In a particular embodiment, the warm-blooded animal is a human.
In another embodiment, the invention provides the use of a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for use in inhibition of bacterial DNA gyrase and/or topoisomerase IV in a warm-blooded animal. In a particular embodiment, the warm-blooded animal is a human.
In another embodiment, the invention provides the use of a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for the manufacture of a medicament for use the treatment of a bacterial infection in a warm-blooded animal. In one embodiment, the bacterial infection is selected from the group consisting of community-acquired pneumoniae, hospital-acquired pneumoniae, skin and skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections, Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococci. In a particular embodiment, the warm-blooded animal is a human.
In another embodiment, the invention provides a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for use in production of an anti-bacterial effect in a warm-blooded animal.
In another embodiment, the invention provides a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for use in inhibition of bacterial DNA gyrase and/or topoisomerase IV in a warm-blooded animal.
In another embodiment, the invention provides a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for use in the treatment of a bacterial infection in a warm-blooded animal.
In another embodiment, the invention provides a compound represented by formula (I), or a pharmaceutically acceptable salt thereof, for use in the treatment of community-acquired pneumoniae, hospital-acquired pneumoniae, skin and skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections, Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis or Vancomycin-Resistant Enterococci.
In this specification the term alkyl includes both straight chained and branched saturated hydrocarbon groups. For example, “C1-6alkyl” refers to an alkyl that has from 1 to 6 carbon atom and includes, for example, methyl, ethyl, propyl, isopropyl and t-butyl. However references to individual alkyl groups such as propyl are specific for the straight chain version only unless otherwise indicated (e.g., isopropyl). An analogous convention applies to other generic terms. Unless otherwise specified, when two or more alkyl groups are indicated by, for example, the term (C1-6alkyl)2 (such as in the term N,N—(C1-6alkyl)2amino), the alkyl groups can be the same or different.
The term “C2-6alkenyl,” as used herein refers to a straight chain or branched hydrocarbon having at least one double bond.
The term “C2-6alkynyl,” as used herein refers to a straight chain or branched hydrocarbon having at least one triple bond.
As used herein, the term “halo” refers to fluoro, chloro, bromo, and iodo.
A “heterocyclyl” is a saturated, partially saturated or unsaturated, mono or bicyclic ring containing 4-14 atoms of which at least one atom is chosen from nitrogen, sulphur or oxygen, which may, unless otherwise specified, be carbon or nitrogen linked, wherein a —CH2— group can optionally be replaced by a —C(O)— and a ring nitrogen may be optionally substituted with one oxo to form an N-oxide and a ring sulfur may be optionally substituted with one or two oxo groups to form S-oxide(s). In one embodiment of the invention a “heterocyclyl” is a saturated, partially saturated or unsaturated, monocyclic ring containing 5 or 6 atoms of which at least one atom is chosen from nitrogen, sulphur or oxygen, it may, unless otherwise specified, be carbon or nitrogen linked In a further aspect of the invention a “heterocyclyl” is an unsaturated, carbon-linked, monocyclic ring containing 5 or 6 atoms of which at least one atom is chosen from nitrogen, sulphur or oxygen. Examples and suitable values of the term “heterocyclyl” are azepanyl, azetidinyl, morpholinyl, piperidinyl, piperazinyl, pyridinyl, pyranyl, pyrrolyl, pyrazolyl, isothiazolyl, indolinyl, quinolinyl, thienyl, 1,3-benzodioxolyl, benzothiazolyl, thiadiazolyl, oxadiazolyl, piperazinyl, thiazolidinyl, pyrrolidinyl, thiomorpholino, pyrrolinyl, homopiperazinyl, 3,5-dioxapiperidinyl, tetrahydropyranyl, imidazolyl, 4,5-dihydro-oxazolyl, pyrimidinyl, pyrazinyl, pyridazinyl, isoxazolyl, thiazolyl, 1H-tetrazolyl, 1H-triazolyl, N-methylpyrrolyl, 4-pyridone, quinolin-4(1H)-one, pyridin-2(1H)-one, imidazo[1,2-a]pyridinyl, 1-isoquinolone, 2-pyrrolidone, 4-thiazolidone, quinoxalinyl, 5,6-dihydro[1,3]thiazolo[4,5-d]pyridazinyl, pyridine-N-oxide and quinoline-N-oxide. Suitable examples of “a nitrogen linked heterocyclyl” are morpholino, piperazin-1-yl, piperidin-1-yl and imidazol-1-yl. In a further aspect of the invention a “heterocyclyl” is a heteroaryl. The term “heteroaryl” refers to an unsaturated and aromatic heterocyclyl which has 5-14 ring atoms wherein at least one atom is chosen from nitrogen, sulphur or oxygen. Examples and suitable values for heteroaryl groups include pyridinyl, 1H-pyrrolyl, 1H-pyrazolyl, isothiazolyl, quinolinyl, thienyl, benzofuranyl, benzothiophenyl, benzothiazolyl, benzimidazolyl, thiadiazolyl, oxadiazolyl, 1H-imidazolyl, pyrimidinyl, pyrazinyl, pyridazinyl, isoxazolyl, thiazolyl, thiophenyl, 1H-pyrazolyl, 1H-tetrazolyl, 1H-triazolyl, N-methylpyrrolyl, 4-oxo-1,4-dihydroquinolinyl, pyridin-2(1H)-one, imidazo[1,2-a]pyridinyl, 1H-indazol-1-yl, 1-isoquinolone, quinoxalinyl, pyridine-N-oxide and quinoline-N-oxide. In a particular embodiment, the heteroaryl is a 5- or 6-membered heteroaryl, for example, pyridinyl, 1H-pyrrolyl, 1H-pyrazolyl, isothiazolyl, thienyl, thiadiazolyl, oxadiazolyl, 1H-imidazolyl, pyrimidinyl, pyrazinyl, pyridazinyl, isoxazolyl, thiazolyl, 1H-tetrazolyl, 1H-triazolyl, N-methylpyrrolyl, and pyridine-N-oxide. In another embodiment heteroaryl also includes pyridinyl-2(1H)-one and indolyl.
A “carbocyclyl” is a saturated, partially saturated or unsaturated, mono-, bi- or tricyclic carbon ring that contains 3-14 atoms; wherein a —CH2— group can optionally be replaced by a —C(O)—. In one embodiment, “carbocyclyl” is a monocyclic ring containing 5 or 6 atoms or a bicyclic ring containing 9 or 10 atoms. Examples of carbocyclyls include cyclopropyl, cyclobutyl, 1-oxocyclopentyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, phenyl, naphthyl, tetralinyl, indanyl or 1-oxoindanyl. The term carbocyclyl encompasses both cycloalkyl and aryl groups. The term cycloalkyl refers to a C3-14carbocyclyl which is completely saturated, for example cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl. The term “aryl” refers to a carbocyclyl which is completely unsaturated and is aromatic. A C6-14aryl is an aromatic, mono-, bi- or tricyclic carbon ring that contains 6-14 atoms, for example phenyl or naphthenyl.
An example of “C1-6alkanoyloxy” is acetoxy. Examples of “C1-6alkoxycarbonyl” are methoxycarbonyl, ethoxycarbonyl, n- and t-butoxycarbonyl. Examples of “C1-6alkoxycarbonylamino” are methoxycarbonylamino, ethoxycarbonylamino, n- and t-butoxycarbonylamino. Examples of “C1-6alkoxy” are methoxy, ethoxy, isopropoxy, and tert-butoxy. Examples of “C1-6alkanoylamino” are formamido, acetamido and propionylamino. Examples of “C1-6alkylS(O)a wherein a is 0, 1, or 2” are methylthio, ethylthio, methylsulphinyl, ethylsulphinyl, methylsulfonyl and ethylsulphonyl. Examples of “C1-6alkanoyl” are propionyl and acetyl. Examples of “N—(C1-6alkyl)amino” are methylamino and ethylamino. Examples of “N,N—(C1-6alkyl)2amino” are N,N-dimethylamino, N,N-diethylamino and N-ethyl-N-methylamino. Examples of “C2-6alkenyl” are vinyl, allyl and 1-propenyl. Examples of “C2-6alkynyl” are ethynyl, 1-propynyl and 2-propynyl. Examples of “N—(C1-6alkyl)sulphamoyl” are N-(methyl)sulphamoyl and N-(ethyl)sulphamoyl. Examples of “N,N—(C1-6alkyl)2sulphamoyl” are N,N-(dimethyl)sulphamoyl and N-(methyl)-N-(ethyl)sulphamoyl. An example of “N,N—(C1-6alkyl)2sulphamoylamino” are N,N-dimethylsulphamoylamino. Examples of “N—(C1-6alkyl)carbamoyl” are methylaminocarbonyl and ethylaminocarbonyl. Examples of “N,N—(C1-6alkyl)2carbamoyl” are dimethylaminocarbonyl and methylethylaminocarbonyl. Examples of “N—(C1-6alkoxy)carbamoyl” are methoxyaminocarbonyl and isopropoxyaminocarbonyl. Examples of “N—(C1-6alkyl)-N—(C1-6alkoxy)carbamoyl” are N-methyl-N-methoxyaminocarbonyl and N-methyl-N-ethoxyaminocarbonyl. Examples of “C3-6cycloalkyl” are cyclopropyl, cyclobutyl, cyclopropyl and cyclohexyl. Examples of “C1-6alkylsulphonylamino” are methylsulphonylamino, isopropylsulphonylamino and t-butylsulphonylamino. Examples of “C1-6alkylsulphonylaminocarbonyl” are methylsulphonylaminocarbonyl, isopropylsulphonylaminocarbonyl and t-butylsulphonylaminocarbonyl. Examples of “C1-6alkylsulphonyl” are methylsulphonyl, isopropylsulphonyl and t-butylsulphonyl.
Examples of “C1-3alkylsulphonylcarbamoyl” are methylsulphonylcarbamoyl, i.e. CH3SO2NHC(O)—, and ethylsulphonylcarbamoyl, i.e. CH3CH2SO2NHC(O)—.
When a carbon atom is substituted by “oxo” a —C(O)— is formed. Thus, for example, if a pyridyl group is substituted on carbon by oxo, a pyridinyl-one is formed, e.g. if the carbon in the two position of pyridine is substituted by oxo, pyridinyl-2(1H)-one is formed.
The term “formula (I)”, unless otherwise specified, refers to all embodiments of formula (I).
A compound of formula (I) may form stable acid or basic salts, and in such cases administration of a compound as a salt may be appropriate, and pharmaceutically acceptable salts may be made by conventional methods such as those described below.
Suitable pharmaceutically-acceptable salts include acid addition salts such as methanesulfonate, tosylate, α-glycerophosphate, fumarate, hydrochloride, citrate, maleate, tartrate and (less preferably) hydrobromide. Also suitable are salts formed with phosphoric and sulfuric acid. In another aspect suitable salts are base salts such as an alkali metal salt for example sodium, an alkaline earth metal salt for example calcium or magnesium, an organic amine salt for example triethylamine, morpholine, N-methylpiperidine, N-ethylpiperidine, procaine, dibenzylamine, N,N-dibenzylethylamine, tris-(2-hydroxyethyl)amine, N-methyl d-glucamine and amino acids such as lysine. There may be more than one cation or anion depending on the number of charged functions and the valency of the cations or anions.
However, to facilitate isolation of the salt during preparation, salts which are less soluble in the chosen solvent may be preferred whether pharmaceutically-acceptable or not.
Within the present invention it is to be understood that a compound of the formula (I), or a salt thereof may exhibit the phenomenon of tautomerism and that the formulae drawings within this specification can represent only one of the possible tautomeric forms. It is to be understood that the invention encompasses any tautomeric form which inhibits DNA gyrase and/or topoisomerase IV and is not to be limited merely to any one tautomeric form utilized within the formulae drawings. The formulae drawings within this specification can represent only one of the possible tautomeric forms and it is to be understood that the specification encompasses all possible tautomeric forms of the compounds drawn not just those forms which it has been possible to show graphically herein. The same applies to compound names.
It will be appreciated by those skilled in the art that certain compounds of formula (I) contain an asymmetrically substituted carbon and/or sulfur atom, and accordingly may exist in, and be isolated in, optically-active and racemic forms. Some compounds may exhibit polymorphism. It is to be understood that the present invention encompasses any racemic, optically-active, polymorphic or stereoisomeric form, or mixtures thereof, which form possesses properties useful in the inhibition of DNA gyrase and/or topoisomerase IV, it being well known in the art how to prepare optically-active forms (for example, by resolution of the racemic form by recrystallization techniques, by synthesis from optically-active starting materials, by chiral synthesis, by enzymatic resolution, by biotransformation, or by chromatographic separation using a chiral stationary phase) and how to determine efficacy for the inhibition of DNA gyrase and/or topoisomerase IV by the standard tests described hereinafter.
By way of clarity, compounds of the invention included all isotopes of the atoms present in formula (I) and any of the examples or embodiments disclosed herein. For example, H (or hydrogen) represents any isotopic form of hydrogen including 1H, 2H (D), and 3H (T); C represents any isotopic form of carbon including 12C, 13C, and 14C; O represents any isotopic form of oxygen including 16O, 17O and 18O; N represents any isotopic form of nitrogen including 13N, 14N and 15N; P represents any isotopic form of phosphorous including 31P and 32P; S represents any isotopic form of sulfur including 32S and 35S; F represents any isotopic form of fluorine including 19F and 18F; Cl represents any isotopic form of chlorine including 35Cl, 37Cl and 36Cl; and the like. In a preferred embodiment, compounds represented by formula (I) comprises isomers of the atoms therein in about their naturally occurring abundance. However, in certain instances, it is desirable to enrich one or more atom in a particular isotope which would normally be present in less abundance. For example, 1H would normally be present in greater than 99.98% abundance; however, a compound of the invention can be enriched in 2H or 3H at one or more positions where H is present. In particular embodiments of the compounds of formula (I), when, for example, hydrogen is enriched in the deuterium isotope, the symbol “D” is used to represent the enrichment in deuterium. In one embodiment, when a compound of the invention is enriched in a radioactive isotope, for example 3H and 14C, they may be useful in drug and/or substrate tissue distribution assays. It is to be understood that the invention encompasses all such isotopic forms which inhibit DNA gyrase and/or topoisomerase IV.
It is also to be understood that certain compounds of the formula (I), and salts thereof can exist in solvated as well as unsolvated forms such as, for example, hydrated forms. It is to be understood that the invention encompasses all such solvated forms which inhibit DNA gyrase and/or topoisomerase IV.
There follow particular and suitable values for certain substituents and groups referred to in this specification. These values may be used where appropriate with any of the definitions and embodiments disclosed hereinbefore, or hereinafter. For the avoidance of doubt each stated species represents a particular and independent aspect of this invention.
In one embodiment the invention provides compounds represented by formula (I):
or a pharmaceutically acceptable salt thereof, wherein:
X is CH or N;
R1 is hydrogen, a C1-6alkyl, C2-6alkenyl, C2-6alkynyl, C3-14carbocyclyl, or a heterocyclyl, wherein R1 may be optionally substituted on carbon by one or more R6; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R7; provided that R1 is not a substituted or unsubstituted phenyl;
R2 is hydrogen or a C1-6alkyl;
R1 and R2, together with the nitrogen to which they are attached, form a heterocyclyl, wherein said heterocyclyl may be optionally substituted on carbon by one or more R8; wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R9;
R3 is a C6-14aryl or a heteroaryl; wherein R3 may be optionally substituted on carbon by one or more R14; and wherein if said heteraryl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heteroaryl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R15; provided that R3 is not an unsubstituted phenyl or an unsubstituted thiophenyl;
R4, for each occurrence, is independently selected from the group consisting of halo, cyano, nitro, hydroxy, C1-6alkyl, C1-6alkoxy, C1-6alkyl-S(O)a—, R17R18N—S(O)a—, C3-14carbocyclyl, and heterocyclyl; or two R4 taken together with the carbon atoms to which they are attached form a C3-14carbocyclyl or a heterocyclyl, wherein each R4 may be optionally substituted on carbon by one or more R16; provided that ring B together with —(R4)n is not 3,4,5-trimethoxyphenyl;
n is an integer from 1 to 5;
a is 0, 1, or 2;
R6, R8, and R14, for each occurrence, are each independently selected from the group consisting of hydroxy, halo, cyano, nitro, C1-6alkyl, C2-6alkenyl, C2-6alkynyl, mercapto, C1-6alkoxy, C1-6alkylS(O)a wherein a is 0 to 2, —C(═N—OH)NH2, phenoxy, carboxy, amino, N—C1-6alkylamino, N,N—(C1-6alkyl)2amino, a heterocyclyl, C1-6alkoxycarbonyl, C1-6alkanoyl, C1-6alkanoyloxy, C1-6alkanoylamino, C1-6alkoxycarbonylamino, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl, C1-6alkylsulphonylamino, sulphamoyl, N—(C1-6alkyl)sulphamoyl, N,N—(C1-6alkyl)2sulphamoyl, sulphamoylamino, N—(C1-6alkyl)sulphamoylamino, N,N—(C1-6alkyl)2sulphamoylamino, C3-14carbocyclyl-L- and heterocyclyl-L-; wherein R6, R8, and R14 may be each independently optionally substituted on carbon by one or more R10; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R11;
R7, R9, and R15, for each occurrence, are each independently selected from the group consisting of C1-6alkyl, C1-6alkoxycarbonyl, C1-6alkanoyl, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl, C3-14carbocyclyl-C(O)-, heterocyclyl-C(O)—, (C1-6alkyl)3silyl, C1-6alkylS(O)a wherein a is 0 to 2, wherein R7, R9, and R15 may be each independently optionally substituted on carbon by one or more R12; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R13;
L, for each occurrence, is independent selected from a direct bond, —O—, —N(R25)—, —C(O)—, —N(R25)C(O)—, —C(O)N(R25)—, —S(O)s—, —SO2N(R25)— or —N(R25)SO2—; wherein R25, for each occurrence, is independently selected from hydrogen or C1-6alkyl and s is 0, 1 or 2;
R10 and R12, for each occurrence, are independently selected from the group consisting of C1-6alkyl, phenyl, halo, cyano, nitro, carboxy, hydroxy, C1-6alkoxy, C1-6alkoxycarbonyl, amino, N—C1-6alkylamino, N,N—(C1-6alkyl)2amino, carbamoyl, N—C1-6alkylcarbamoyl, N,N—(C1-6alkyl)2carbamoyl and N—C1-6alkyloxycarbamoyl; and
R11 and R13, for each occurrence, are each independently a C1-6alkyl;
R16, for each occurrence, is independently, a halo, hydroxy, a C1-6alkyl, or a C1-6alkoxy;
R17 and R18, for each occurrence, are independently hydrogen or a C1-6alkyl; or R17 and R18, together with the nitrogen to which they are attached form a heterocyclyl;
provided that —NR1R2 is not —NHCH3, —N(CH3)2.
In one embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein X is N.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein X is CH.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 is a C1-6alkyl that is optionally substituted on carbon by one or more R6; and R2 is hydrogen.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 is n-propyl, 3-(N,N-dimethylamino)-propyl, 3-(2-oxo-pyrrolidino)-propyl, 1-acetyl-piperidine-4-yl, 2-morpholino-ethyl, 2-acetamido-ethyl, 3-acetamido-propyl, pyridin-2-ylmethyl, pyridin-3-ylmethyl, pyridin-4-ylmethyl, 2-[(tert-butoxycarbonyl)amino]-ethyl, 2-carbamoyl-ethyl, 2-(pyridin-2-yl)-ethyl, 2-(pyridin-3-yl)-ethyl, 2-(pyridin-4-yl)ethyl, 2-(1,1-dioxo-thiomorpholino)-ethyl, 3-(1,1-dioxo-thiomorpholino)-propyl, 3-morpholino-propyl, 2-methoxyethyl, tetrahydrofuran-2-ylmethyl, 2-(isopropoxy)ethyl, furan-2-ylmethyl, ethoxycarbonylmethyl, phenoxyethyl, 1-(methoxycarbonyl)ethyl, 6-methyl-pyrazin-3-ylmethyl, isopropyl, 3-[(tert-butoxycarbonyl)amino]-propyl, 3-methoxypropyl, 2-(N,N-dimethylamino)-ethyl, 3-(1H-benzimidazol-2-yl)-propyl, 3-[(6-methyl-pyrazin-3-ylcarbonyl)amino]-propyl, 1-methyl-1H-imidazol-5-ylmethyl, 1-methyl-1H-imidazol-4-ylmethyl, tetrahydrofuran-3-yl, 1-methyl-1H-pyrazol-4-ylmethyl, 2-methoxy-1-methoxymethyl-ethyl, 3-amino-propyl, carboxymethyl, 1-carboxy-ethyl, 1H-benzimidazol-2-ylmethyl, 2-(1H-imidazol-4-yl)-ethyl, 2-(1H-benzimidazol-2-yl)-ethyl, 2-(1H-imidazol-1-yl)-ethyl, 2-(1H-pyrazol-1-yl)-ethyl, 2-(1H-pyrazol-4-yl)-ethyl, 2-(4-methyl-thiazole-5-yl)-ethyl, 2-(4-methyl-piperazino)-ethyl, 3-(1H-benzimidazol-2-yl)-propyl, 2-(5-methyl-1H-pyrazol-4-yl)-ethyl, 3-[(methylsulfonyl)amino]-propyl, or [1-(tert-butoxycarbonyl)-1H-benzimidazol-2-yl]methyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 is a C1-6alkyl which is optionally substituted with amino, carboxy, N,N-dimethylamino, 2-oxo-pyrrolidino, acetamido, pyridin-2-yl, pyridin-3-yl, pyridin-4-yl, (tert-butoxycarbonyl)amino, carbamoyl, methylsulfonylamino, morpholino, 1,1-dioxo-thiomorpholino, methoxy, tetrahydrofuran-2-yl, isopropoxy, furan-2-yl, ethoxycarbonyl, phenoxy, methoxycarbonyl, 6-methyl-pyrazin-3-yl, benzoimidazol-2-yl, [(6-methyl-pyrazin-3-yl)carbonyl]amino, 1H-imidazol-2-yl, 1H-imidazol-1-yl, 1-methyl- 1H-imidazol-2-yl, 1-methyl- 1H-pyrazol-4-yl, 5-methyl-1H-pyrazol-4-yl, 1H-pyrazol-1-yl, 1H-pyrazol-4-yl, 4-methyl-thiazole-5-yl, or 4-methyl-piperazino.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 and R2, together with the nitrogen to which they are attached, form a heterocyclyl, wherein said heterocyclyl may be optionally substituted on carbon by one or more R8; wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R9.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 and R2, together with the nitrogen to which they are attached, form a 1H-pyrazol-1-yl, wherein said 1H-pyrazol-1-yl may be optionally substituted on carbon by one or more R8.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R8 is independently a C1-6alkyl or a C3-6cycloalkyl wherein said R8 is optionally substituted on carbon by one or more halo.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R8 is independently a C1-3alkyl or a C3-6cycloalkyl wherein said R8 is optionally substituted on carbon by one or more fluoro.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 and R2, together with the nitrogen to which they are attached, form a 1H-pyrazol-1-yl, wherein 1H-pyrazol-1-yl may be optionally substituted on carbon by one or more methyl, cyclopropyl or trifluoromethyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 and R2, together with the nitrogen to which they are attached, form piperidino, 4-hydroxy-piperidino, 3-hydroxymethyl-piperidino, 4-morpholino-piperidino, 4-(N-methyl-carbamoyl)-piperidino, 4-fluoro-piperidino, 4-methoxy-piperidino, 4-acetamido-piperidino, pyrrolidino, 3-hydroxy-pyrrolidino, 2-methyl-pyrrolidino, 2,5-dimethyl-pyrrolidino, azetidine-1-yl, 4-acetamidopiperidino, 3-trifluoromethyl-1H-pyrazol-1-yl, 3-trifluoromethyl-5-methyl-1H-pyrazol-1-yl, 1H-imidazol-1-yl, 4,5-dichloro-1H-imidazol-1-yl, 2-methyl-1H-imidazol-1-yl, 1H-pyrrol-1-yl, morpholino, 2,6-dimethylmorpholino, 3,5-dimethyl-pyrazol-1-yl, 4-(pyridin-4-yl)-1H-pyrazol-1-yl, 4-chloro-1H-pyrazol-1-yl, 4-trifluoromethyl-1H-imidazol-1-yl, 2-methyl-1H-imidazol-1-yl, 1,2,3-2H-triazol-2-yl, 1,2,3-1H-triazol-1-yl, 1,2,3-1H-benzotriazol-1-yl, 1,2,3-2H-benzotriazol-2-yl, 1H-[1,2,3]triazolo[4,5-b]pyridin-1-yl, 2H-[1,2,3]triazolo[4,5-b]pyridin-2-yl, azepan-1-yl, 4-aceto-piperazino, 4-(2-methoxy-ethyl)-piperazino, 4-methyl-piperazino, 4-[(N,N-dimethylamino)carbonyl]-piperazino, 4-(methylsulfonyl)-piperazino, or 4-cyclopropylcarbonyl-piperazino.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R1 and R2, together with the nitrogen to which they are attached, form a heterocyclyl selected from 1H-pyrazol-1-yl, 1H-benzotriazol-1-yl, 2H-benzotriazol-2-yl, and 1H-1,2,3-triazol-1-yl, wherein said heterocyclyl may be optionally substituted on carbon by one or more R8; wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R9. In one embodiment, R8, for each occurrence, is independently selected from hydroxy, hydroxymethyl, morpholino, N-methylcarbamoyl, fluoro, methoxy, methyl, acetamido, trifluoromethyl, chloro, and pyridin-4-yl. In another embodiment, R9, for each occurrence, is independently selected from a C1-6alkyl, 2-methoxyethyl, acetyl, N,N-dimethylcarbamoyl, cyclopropylcarbonyl, methylsulfonyl and tert-butoxycarbonyl.
In another embodiment, R1 is a C3-14carbocyclyl; wherein R1 may be optionally substituted on carbon by one or more R6; provided that R1 is not a substituted or unsubstituted phenyl. In one embodiment, R1 is cyclohexyl. In another embodiment, R6 is hydroxy.
In another embodiment, R1 is a heterocycyl; wherein R1 may be optionally substituted on carbon by one or more R6; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R7; provided that R1 is not a substituted or unsubstituted phenyl. In one embodiment, R1 is piperidinyl or tetrahydrofuranyl which may be optionally substituted on carbon by one or more R6; and wherein the —NH— moiety of piperidinyl may be optionally t substituted by a group selected from R7.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is a C6-14aryl; wherein R3 may be optionally substituted on carbon by one or more R14; provided that R3 is not an unsubstituted phenyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is phenyl substituted on carbon by two R14 which taken together with the carbon atoms to which they are attached form a C3-14carbocyclyl or a heterocyclyl; wherein R14 may be independently optionally substituted on carbon by one or more R10; and wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R11.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is a heteroaryl; wherein R3 may be optionally substituted on carbon by one or more R14; and wherein if said heteraryl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heteroaryl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R15; provided that R3 is not an unsubstituted thiophenyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R14, for each occurrence, is independently selected from methoxycarbonyl, (methylsulfonyl)amino, ethoxycarbonyl, acetyl, amino, 5-oxo-4,5-dihydro-1,2,4-oxadiazolyl, trifluoromethyl, methoxy, (dimethylsulfamoyl)amino, cyano, fluoro, nitro, (E)-2-carboxyethenyl, 2-carboxy-ethyl, carboxy, (E)-2-ethoxycarbonylethenyl, (E)-2-carbamoyl-ethenyl, (E)-2-(N-methylcarbamoyl)-ethenyl, (E)-2-(N-methoxycarbamoyl)-ethenyl, N-methoxycarbamoyl, N-ethyl-carbamoyl, N-benzyl-carbamoyl, N,N-dimethylcarbamoyl, piperidinocarbonyl, 3,3-difluoro-piperidinocarbonyl, or N′-hydroxycarbamimidoyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is phenyl; wherein R3 is substituted on carbon by one or more R14. For example, R14, for each occurrence, is independently selected from methoxycarbonyl, (methylsulfonyl)amino, ethoxycarbonyl, trifluoromethyl, methoxy, (dimethylsulfamoyl)amino, cyano, fluoro, nitro, (E)-2-carboxyethenyl, 2-carboxy-ethyl, carboxy, (E)-2-ethoxycarbonylethenyl, (E)-2-carbamoyl-ethenyl, (E)-2-(N-methylcarbamoyl)-ethenyl, (E)-2-(N-methoxycarbamoyl)-ethenyl, N-methoxycarbamoyl, N-ethyl-carbamoyl, N-benzyl-carbamoyl, or N,N-dimethylcarbamoyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is pyrimidinyl, indolinyl, pyridinyl, benzofuranyl, benzothiophenyl, thiophenyl, 1H-pyrazolyl, 4-oxo-1,4-dihydroquinolinyl, thiazolyl, quinolinyl, and benzimidazolyl; wherein R3 may be optionally substituted on carbon by one or more R14; and wherein if R3 contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if R3 contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R15; provided that R3 is not an unsubstituted thiophenyl. In one embodiment, R14, for each occurrence, is independently selected from methoxycarbonyl, ethoxycarbonyl, acetyl, amino, 5-oxo-4,5-dihydro-1,2,4-oxadiazolyl, methoxy, carboxy, N-ethyl-carbamoyl, N-benzyl-carbamoyl, N,N-dimethylcarbamoyl, piperidinocarbonyl, 3,3-difluoro-piperidinocarbonyl, or N′-hydroxycarbamimidoyl. In another embodiment, R15, for each occurrence, is independently selected from tert-butyl-dimethyl-silyl, 2-methoxyethyl, or tert-butoxycarbonyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is 2-methoxyphenyl, 3-methoxyphenyl, 4-methoxyphenyl, 3-(methoxycarbonyl)-phenyl, 4-(ethoxycarbonyl)-phenyl, 3-[(methylsulfony)amino]-phenyl, 4-methoxy-3-trifluoromethyl, 3,4,5-trimethoxy-phenyl, 3-[(dimethylsulfamoyl)amino]-phenyl, 3-cyano-4-fluoro-phenyl, 3-nitrophenyl, 4-carboxyphenyl, 3-carboxyphenyl, 4-(2-carboxyethyl)-phenyl, 4-[(E)-2-carboxyethenyl]-phenyl, 3-[(E)-2-carboxyethenyl]-phenyl, 3-[(E)-2-ethoxycarbonylethenyl]-phenyl, 3-[(E)-2-(N-methylcarbamoyl)ethenyl]-phenyl, 3-[(E)-2-carbamoylethenyl]-phenyl, 3-[(E)-2-(N-methyloxycarbamoyl)ethenyl]-phenyl, 3-(N-ethylcarbamoyl)-phenyl, 3-(N-benzylcarbamoyl)-phenyl, 4-(N-ethylcarbamoyl)-phenyl, 4-(N,N-dimethylcarbamoyl)-phenyl, or 4-(N-benzylcarbamoyl)-phenyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is 2-methoxypyrimidin-5-yl, indolin-6-yl, 5-ethoxycarbonyl-pyridin-3-yl, 2,6-dimethoxypyridin-4-yl, benzofuran-2-yl, 5-acetyl-thiophen-2-yl, 5-cyano-pyridin-3-yl, 1-(tert-butoxy-dimethyl-silyl)-1H-indolin-3-yl, 5-carboxy-thiophen-2-yl, 6-methoxy-pyridin-3-yl, 2-amino-pyrimidin-5-yl, 1H-pyrazol-4-yl, 6-amino-pyridin-3-yl, 2-methoxycarbonyl-benzothiophen-5-yl, 2-carboxy-benzothiophen-5-yl, pyridin-3-yl, pyrimidin-5-yl, 5-carboxy-pyridin-3-yl, 5-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)-pyridin-3-yl, 4-oxo-3-ethoxycarbonyl-1-(2-methoxyethyl)-1,4-dihydroquinolin-6-yl, 4-oxo-3-carboxy-1-(2-methoxyethyl)-1,4-dihydroquinolin-6-yl, 4-methoxy-thiazol-2-yl, 3-carboxy-quinolin-6-yl, 5-(N,N-dimethylcarbamoyl)-thiophen-2-yl, 5-(N-methylcarbamoyl)-thiophen-2-yl, 5-(N-benzylcarbamoyl)-thiophen-2-yl, 5-(piperdinocarbonyl)-thiophen-2-yl, 5-(3,3-difluoropiperdinocarbonyl)-thiophen-2-yl, 5-(N-benzylcarbamoyl)-pyridin-3-yl, 5-(N′-hydroxycarbamimidoyl)-pyridin-3-yl, or 5-(5-oxo-4,5-dihydro-1,2,4-oxadiazol-3-yl)-pyridin-3-yl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is 1-ethyl -(2-methoxyethyl)-4-oxo-1,4-dihydroquinolin-6-yl-carboxylate or 1H-indol-6-yl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is a pyridin-3-yl or 2-oxo-pyridin-5-yl group wherein said pyridin-3-yl or 2-oxo-pyridin-5-yl group may be optionally substituted on carbon by one or more R14 and wherein the N of said 2-oxo-pyridin-5-yl is substituted by a group selected from R15. In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R14, for each occurrence, is independently a carboxy, C1-6alkoxy, C1-6alkylsulphonylcarbamoyl, C1-6alkoxycarbamoyl, or C1-6alkylS(O)a wherein a is 0, 1 or 2.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R15, for each occurrence, is independently a C1-6alkyl wherein said C1-6alkyl is optionally substituted by C1-6alkoxy or saturated heterocyclyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R14, for each occurrence, is independently a carboxy, C1-3alkoxy, C1-3alkylsulphonylcarbamoyl, C1-3alkoxycarbamoyl, or C1-3alkylS(O)a wherein a is 0, 1 or 2.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R15, for each occurrence, is independently a C1-3alkyl wherein said C1-3alkyl is optionally substituted by C1-3alkoxy or saturated heterocyclyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R15, for each occurrence, is independently a C1-3alkyl wherein said C1-3alkyl is optionally substituted by C1-3alkoxy or morpholino.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is a 6-membered heteroaryl containing at least one nitrogen atom wherein one of the carbon atoms of said 6-membered heteroaryl ring may be optionally substituted with O to form a —(CO)—, and further wherein said 6-membered heteroaryl may be optionally substituted on carbon by one or more R14 and when one of the carbon atoms of said 6-membered heteroaryl ring is substituted with O to form a —(CO)—, the nitrogen of that 6-membered heteroaryl is substituted by a group selected from R15.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R3 is 2-oxo-3-carboxy-1-ethyl-pyridin-5-yl, 2-oxo-3-carboxy-1-(2-methoxyethyl)-pyridin-5-yl, 3-carboxy-6-(2-dimethylaminoethoxy)-pyridin-5-yl, 3-(N-2-hydroxyethylcarbamoyl)-pyridin-5-yl, 3-N-(2-methylsulfonylethyl)carbamoyl-pyridin-5-yl, 2-methoxy-3-carboxy-pyridin-5-yl, 3-N-methylcarbamoyl-pyridin-5-yl, 2-oxo-3-carboxy-1-methyl-pyridin-5-yl, 2-oxo-3-N-(methylsulfonyl)-carbamoyl-1-methyl-pyridin-5-yl, 3-N-methoxycarbamoyl-pyridin-5-yl, 3-carboxy-pyridin-5-yl, 2-oxo-3-carboxy-1-(2-morpholinoethyl)-pyridin-5-yl, 3-carboxy-2-methylsulphanyl-pyridin-5-yl, 3-carboxy-pyridin-5-yl, 2-methoxy-3-(N-methylsulfonylcarbamoyl)-pyridin-5-yl, and 2-methoxy-3-(N-ethylsulfonylcarbamoyl)-pyridin-5-yl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 1.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 2.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 3.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 4.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 4.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R4, for each occurrence, is independently a halo, C1-6alkyl or C1-6alkoxy.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 2 and R4, for each occurrence, is independently a halo, C1-6alkyl or C1-6alkoxy. In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 2 and R4, for each occurrence, is independently a F, Cl, methyl or methoxy.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein R4, for each occurrence, is independently selected from methyl, hydroxymethyl, fluoro, chloro, bromo, 1H-tetrazole-1-yl, methoxy, cyano, 5-methyl-1H-tetrazole-1-yl, 2-methoxyethoxy, nitro, morpholinosulfonyl, or trifluoromethyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein n is 2 and one R4 is fluoro and the other is chloro.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein two adjacent R4 together with ring B form 1H-indolinyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is N;
R1 is a C1-6alkyl which is optionally substituted with on carbon with one or more R6;
R2 is hydrogen;
R3 is 5-carboxy-pyridin-3-yl, 5-ethoxycarbonyl-pyridin-3-yl, 3-[(E)-2-carboxyethenyl]-phenyl, 3-[(E)-2-ethoxycarbonylethenyl]-phenyl, 3-[(E)-2-(N-methylcarbamoyl)ethenyl]-phenyl, or 3-[(E)-2-carbamoylethenyl]-phenyl;
n is 2; and
R4, for each occurrence is independently selected from a halo.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is N;
R1 is n-propyl, 3-(N,N-dimethylamino)-propyl, 2-(pyridin-2-yl)-ethyl, 2-(pyridin-3-yl)-ethyl, or 2-(pyridin-4-yl)ethyl;
R2 is hydrogen;
R3 is 5-carboxy-pyridin-3-yl, 5-ethoxycarbonyl-pyridin-3-yl, 3-[(E)-2-carboxyethenyl]-phenyl, 3-[(E)-2-ethoxycarbonylethenyl]-phenyl, 3-[(E)-2-(N-methylcarbamoyl)ethenyl]-phenyl, or 3-[(E)-2-carbamoylethenyl]-phenyl;
n is 2; and
one of R4 is fluoro and the other is chloro.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is N;
R1 and R2, together with the nitrogen to which they are attached, form pyrazol-1-yl wherein said pyrazol-1-yl may be optionally substituted on carbon by one or more R8;
R3 is a 6-membered heteroaryl containing at least one nitrogen atom wherein one of the carbon atoms of said 6-membered heteroaryl ring may be optionally substituted with O to form a —(CO)—, and further wherein said 6-membered heteroaryl may be optionally substituted on carbon by one or more R14 and when one of the carbon atoms of said 6-membered heteroaryl ring is substituted with O to form a —(CO)—, the nitrogen of that 6-membered heteroaryl is substituted by a group selected from R15;
n is 2;
R4, for each occurrence, is independently a halo, C1-6alkyl or C1-6alkoxy;
R8, for each occurrence, is independently a C1-6alkyl or a C3-6cycloalkyl wherein said R8 is optionally substituted on carbon by one or more fluoro;
R14, for each occurrence, is independently a carboxy, C1-6alkoxy, C1-3alkylsulphonylcarbamoyl, N—C1-3alkylcarbamoyl, N—C1-3alkoxycarbamoyl, or C1-6alkylS(O)a wherein a is 0, 1 or 2 wherein said R14 may be optionally substituted on carbon by one or more hydroxy, (C1-3alkyl)2N, or C1-3alkylsulfonyl; and
R15, for each occurrence, is independently a C1-6alkyl wherein said C1-6alkyl is optionally substituted by C1-6alkoxy or saturated heterocyclyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is N;
R1 and R2, together with the nitrogen to which they are attached, form pyrazol-1-yl wherein said pyrazol-1-yl may be optionally substituted on carbon by one or more R8;
R3 is a 6-membered heteroaryl containing at least one nitrogen atom wherein one of the carbon atoms of said 6-membered heteroaryl ring may be optionally substituted with O to form a —(CO)—, and further wherein said 6-membered heteroaryl may be optionally substituted on carbon by one or more R14 and when one of the carbon atoms of said 6-membered heteroaryl ring is substituted with O to form a —(CO)—, the nitrogen of that 6-membered heteroaryl is substituted by a group selected from R15;
n is 2;
R4, for each occurrence, is independently a halo, C1-6alkyl or C1-6alkoxy;
R8, for each occurrence, is independently a methyl, trifluoromethyl or a cyclopropyl;
R14, for each occurrence, is independently a carboxy, C1-6alkoxy, C1-3alkylsulphonylcarbamoyl, N—C1-3alkylcarbamoyl, N—C1-3alkoxycarbamoyl, or C1-6alkylS(O)a wherein a is 0, 1 or 2 wherein said R14 may be optionally substituted on carbon by one or more hydroxy, (C1-3alkyl)2N, or C1-3alkylsulfonyl; and
R15, for each occurrence, is independently a C1-6alkyl wherein said C1-6alkyl is optionally substituted by C1-6alkoxy or saturated heterocyclyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is N;
R1 and R2, together with the nitrogen to which they are attached, form pyrazol-1-yl wherein said pyrazol-1-yl may be optionally substituted on carbon by one or more R8;
R3 is a pyridin-3-yl or 2-oxo-pyridin-5-yl group wherein said pyridin-3-yl or 2-oxo-pyridin-5-yl group may be optionally substituted on carbon by one or more R14 and wherein the N of said 2-oxo-pyridin-5-yl is substituted by a group selected from R15;
n is 2;
R4, for each occurrence, is independently a halo, C1-3alkyl or C1-3alkoxy;
R8, for each occurrence, is independently a C1-3alkyl optionally substituted on carbon by one or more fluoro;
R14, for each occurrence, is independently a carboxy, C1-3alkoxy, C1-3alkylsulphonylcarbamoyl, N—C1-3alkylcarbamoyl, N—C1-3alkoxycarbamoyl, or C1-3alkylS(O)a wherein a is 0, 1 or 2, wherein said R14 may be optionally substituted on carbon by one or more hydroxy, (C1-3alkyl)2N—, or 1-3alkylsulfonyl;
R15, for each occurrence, is independently a C1-3alkyl wherein said C1-3alkyl is optionally substituted by C1-3alkoxy or saturated heterocyclyl.
In another embodiment the invention provides compounds represented by formula (I), or a pharmaceutically acceptable salt thereof, wherein:
X is N;
R1 and R2, together with the nitrogen to which they are attached, form a heterocyclyl selected from 1H-pyrazol-1-yl, 1H-benzotriazol-1-yl, 2H-benzotriazol-2-yl, and 1H-1,2,3-triazol-1-yl, wherein said heterocyclyl may be optionally substituted on carbon by one or more R8; wherein if said hetercyclyl contains an ═N— or a —S— moiety that nitrogen may be optionally substituted by one oxo group and that sulfur may be optionally substituted by one or two oxo groups; and wherein if said heterocyclyl contains an —NH— moiety that nitrogen may be optionally substituted by a group selected from R9;
R3 is 5-carboxy-pyridin-3-yl, 5-ethoxycarbonyl-pyridin-3-yl, 3-[(E)-2-carboxyethenyl]-phenyl, 3-[(E)-2-ethoxycarbonylethenyl]-phenyl, 3-[(E)-2-(N-methylcarbamoyl)ethenyl]-phenyl, or 3-1(E)-2-carbamoylethenyl]-phenyl;
n is 2;
R4, for each occurrence is independently a halo;
R8, for each occurrence, is independently hydroxy, hydroxymethyl, morpholino, N-methylcarbamoyl, fluoro, methoxy, methyl, acetamido, trifluoromethyl, chloro, or pyridin-4-yl;
R9, for each occurrence, is independently a C1-6alkyl, 2-methoxyethyl, acetyl, N,N-dimethylcarbamoyl, cyclopropylcarbonyl, methylsulfonyl or tert-butoxycarbonyl.
Particular compounds of the invention are the compounds of the Examples, and pharmaceutically acceptable salts thereof, each of which provides a further independent aspect of the invention. For those examples which are themselves in the form of a salt, a further independent aspect of the invention is those specific salts as well as other pharmaceutically acceptable salts thereof and the free bases thereof. In further aspects, the present invention also comprises any two or more compounds of the Examples.
In another embodiment the invention provides compounds of Examples 319, 675, 677, 679, 681, 683, 684, 761, 815, 854, 861, 863, 909, 918, 919, 1019, 1026, 1075, 1076, 1086, 1087, 1088, 1143, 1145, 1152, 1159 and 1160, and or a pharmaceutically acceptable salt thereof.
In another embodiment the invention provides compounds of Examples 319, 638, 675, 677, 679, 681, 683, 684, 761, 815, 854, 861, 863, 909, 918, 919, 1019, 1026, 1075, 1076, 1086, 1087, 1088, 1143, 1145, 1152, 1159 and 1160, and or a pharmaceutically acceptable salt thereof.
In another embodiment, the invention provides pharmaceutical compositions comprising a pharmaceutically acceptable excipient or carrier and a compound represented by formula (I), or a pharmaceutically acceptable salt thereof.
In a further aspect the present invention provides a process for preparing a compound of formula (I), or a pharmaceutically-acceptable salt thereof, wherein variable groups in the schemes below are as defined in formula (I) unless otherwise specified. In general, the compounds of the invention can be prepared by adding Ring B, —NR1R2 and R3 to a pyrimidine or pyridine core in any order. For example, formula (I) can be prepared by the following methods:
with a compound of formula (ii):
in the presence of a palladium(O) catalyst and a base, such as sodium carbonate, wherein L1 is a displaceable group such as a halo; and R19 and R20 are each independently hydrogen or a C1-6alkyl; or R19 and R20 together form a C2-4alkylene bridge which may be optionally substituted with one or more independently selected C1-4alkyl groups.
Process B: Reacting a Compound of Formula (iii):
wherein R21 is a C1-6alkyl or a C6-14aryl;
with a compound represented by formula (iv):
in the presence of a base, such as NaH, diisopropylethylamine, or NaOH. In some instances, it may be necessary to heat the reaction.
Compounds represented by formula (i) can be prepared by reacting a compound represented by formula (v):
with a compound represented by formula (vi):
in the presence of an acid, such as HCl and heat, wherein L1 and L2 are each, independently, displaceable groups, such as a halo.
A compound represented by formula (v) can be prepared from a pyrimidine or pyridine derivative by reacting a compound represented by formula (vii):
with a compound represented by formula (iv) in the presence of a base and optionally heat, wherein L1, L2 and L3 are each, independently, displaceable groups, such as a halo.
Compounds represented by formula (iii) can be prepared by treating a compound represented by formula (viii):
with a peroxide, such as 3-chloroperoxybenzoic acid.
Compounds represented by formula (viii) can be prepared by reacting a compound represented by formula (ix):
with a compound represented by formula (vi) in the presence of an acid, such as HCl and heat.
Compounds represented by formula (ix) can be prepared by reacting a compound represented by formula (x):
with a compound represented by formula (ii) in the presence of a palladium(O) catalyst and a base, such as sodium carbonate.
Alternatively, compounds represented by formula (iii) can be prepared by reacting a compound represented by formula (xi):
with a compound of formula (ii) in the presence of a palladium(O) catalyst and a base, such as sodium carbonate.
Compounds represented by formula (xi) can be prepared by treating a compound represented by formula (xii):
with a peroxide, such as 3-chloroperoxybenzoic acid.
Compounds represented by formula (xii) can be prepared by reacting a compound represented by formula (x) with an aniline derivative represented by formula (vi) in the presence of an acid, such as HCl and heat.
Compounds represented by formulas (ii), (iv), (vi), (vii) and (x) can be purchased or prepared by standard methods known in the art.
The formation of a pharmaceutically-acceptable salt is within the skill of an ordinary organic chemist using standard techniques.
It will be appreciated that certain of the various ring substituents in the compounds of the present invention may be introduced by standard aromatic substitution reactions or generated by conventional functional group modifications either prior to or immediately following the processes mentioned above, and as such are included in the process aspect of the invention. The reagents used to introduce such ring substituents are either commercially available or are made by processes known in the art.
Introduction of substituents into a ring may convert one compound of the formula (I) into another compound of the formula (I). Such reactions and modifications include, for example, introduction of a substituent by means of an aromatic substitution reaction, reduction of substituents, alkylation of substituents, oxidation of substituents, esterification of substituents, amidation of substituents, formation of heteroaryl rings. Particular examples of aromatic substitution reactions include the introduction of alkoxides, diazotization reactions followed by introduction of thiol group, alcohol group, halogen group. Examples of modifications include; oxidation of alkylthio to alkylsulphinyl or alkylsulphonyl. (See Advanced Organic Chemistry, 4th Edition, by Jerry March, published by John Wiley & Sons 1992). In one embodiment, an ester substituent on a compound of formula (I) may be converted to a carboxylic acid by treating the ester with a base, such as sodium hydroxide, barium hydroxide, or trimethyltin hydroxide. In another embodiment, a carboxylic acid substituent on a compound of formula (I) may be converted to an amide by reacting the carboxylic acid group with a primary or secondary amine in the presence of a peptide coupling reagent, such as O-(7-azabenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HATU), dicyclohexylcarbodiimide (DCC), or 1-ethyl-3-(3-dimethyllaminopropyl)carbodiimide (EDC). The reagents and reaction conditions for such procedures are well known in the chemical art.
The skilled organic chemist will be able to use and adapt the information contained and referenced within the above references, and accompanying Examples therein and also the Examples herein, to obtain necessary starting materials, and products. If not commercially available, the necessary starting materials for the procedures such as those described above may be made by procedures which are selected from standard organic chemical techniques, techniques which are analogous to the synthesis of known, structurally similar compounds, or techniques which are analogous to the above described procedure or the procedures described in the examples. It is noted that many of the starting materials for synthetic methods as described above are commercially available and/or widely reported in the scientific literature, or could be made from commercially available compounds using adaptations of processes reported in the scientific literature. The reader is further referred to Advanced Organic Chemistry, 4th Edition, by Jerry March, published by John Wiley & Sons 1992, for general guidance on reaction conditions and reagents.
It will also be appreciated that in some of the reactions mentioned herein it may be necessary/desirable to protect any sensitive groups in compounds. The instances where protection is necessary or desirable are known to those skilled in the art, as are suitable methods for such protection. Conventional protecting groups may be used in accordance with standard practice (for illustration see T. W. Greene, Protective Groups in Organic Synthesis, John Wiley and Sons, 1991).
Examples of a suitable protecting group for a hydroxy group is, for example, an acyl group, for example an alkanoyl group such as acetyl, an aroyl group, for example benzoyl, a silyl group such as trimethylsilyl or an arylmethyl group, for example benzyl. The deprotection conditions for the above protecting groups will necessarily vary with the choice of protecting group. Thus, for example, an acyl group such as an alkanoyl or an aroyl group may be removed, for example, by hydrolysis with a suitable base such as an alkali metal hydroxide, for example lithium or sodium hydroxide. Alternatively a silyl group such as trimethylsilyl may be removed, for example, by fluoride or by aqueous acid; or an arylmethyl group such as a benzyl group may be removed, for example, by hydrogenation in the presence of a catalyst such as palladium-on-carbon.
A suitable protecting group for an amino group is, for example, an acyl group, for example an alkanoyl group such as acetyl, an alkoxycarbonyl group, for example a methoxycarbonyl, ethoxycarbonyl or t-butoxycarbonyl group, an arylmethoxycarbonyl group, for example benzyloxycarbonyl, or an aroyl group, for example benzoyl. The deprotection conditions for the above protecting groups necessarily vary with the choice of protecting group. Thus, for example, an acyl group such as an alkanoyl or alkoxycarbonyl group or an aroyl group may be removed for example, by hydrolysis with a suitable base such as an alkali metal hydroxide, for example lithium or sodium hydroxide. Alternatively an acyl group such as a t-butoxycarbonyl group may be removed, for example, by treatment with a suitable acid as hydrochloric, sulphuric or phosphoric acid or trifluoroacetic acid and an arylmethoxycarbonyl group such as a benzyloxycarbonyl group may be removed, for example, by hydrogenation over a catalyst such as palladium-on-carbon, or by treatment with a Lewis acid for example boron tris(trifluoroacetate). A suitable alternative protecting group for a primary amino group is, for example, a phthaloyl group which may be removed by treatment with an alkylamine, for example dimethylaminopropylamine or 2-hydroxyethylamine, or with hydrazine.
A suitable protecting group for a carboxy group is, for example, an esterifying group, for example a methyl or an ethyl group which may be removed, for example, by hydrolysis with a base such as sodium hydroxide, or for example a t-butyl group which may be removed, for example, by treatment with an acid, for example an organic acid such as trifluoroacetic acid, or for example a benzyl group which may be removed, for example, by hydrogenation over a catalyst such as palladium-on-carbon, or for example, an allyl group which may be removed, for example, by use of a palladium catalyst such as palladium acetate.
The protecting groups may be removed at any convenient stage in the synthesis using conventional techniques well known in the chemical art, or they may be removed during a later reaction step or work-up.
When an optically active form of a compound of the invention is required, it may be obtained by carrying out one of the above procedures using an optically active starting material (formed, for example, by asymmetric induction of a suitable reaction step), or by resolution of a racemic form of the compound or intermediate using a standard procedure, or by chromatographic separation of diastereoisomers (when produced). Enzymatic techniques may also be useful for the preparation of optically active compounds and/or intermediates.
Similarly, when a pure regioisomer of a compound of the invention is required, it may be obtained by carrying out one of the above procedures using a pure regioisomer as a starting material, or by resolution of a mixture of the regioisomers or intermediates using a standard procedure.
E.coli GyrB ATPase Inhibition Activity: Compounds may be tested for inhibition of E. coli GyrB ATPase activity using an ammonium molybdate/malachite green-based phosphate detection assay (Lanzetta, P. A., L. J. Alvarez, P. S. Reinach, and O. A. Candia, 1979, 100: 95-97). Assays are performed in multiwell plates in 30 μl reactions containing: 50 mM Hepes buffer pH 7.5, 75 mM ammonium acetate, 8.0 mM magnesium chloride, 0.5 mM ethylenediaminetetraacetic acid, 5% glycerol, 1 mM 1,4-Dithio-DL-threitol, 200 nM bovine serum albumin, 1.6 μg/ml sheared salmon sperm DNA, 400 pM E. coli GyrA, 400 pM E. coli GyrB, 250 μM ATP, and the test compound in dimethylsulfoxide. Reactions are quenched with 30 μl of ammonium molybdate/malachite green detection reagent containing 1.2 mM malachite green hydrochloride, 8.5 mM ammonium molybdate tetrahydrate, and 1 M hydrochloric acid. Plates can be read in an absorbance plate reader at 650 nm and percent inhibition values are calculated using dimethylsulfoxide (2%)-containing reactions as 0% inhibition and EDTA-containing (2.4 μM) reactions as 100% inhibition controls. An IC50 measurement of compound potency for each compound can be determined from reactions performed in the presence of 10 different compound concentrations.
E. coli Topoisomerase IV ATPase Inhibition Activity: Compounds may be tested for inhibition of E. coli topoisomerase IV ATPase activity as described above for E. coli GyrB except the 30 μl reactions contained the following: 20 mM TRIS buffer pH 8, 50 mM ammonium acetate, 8 mM magnesium chloride, 5% glycerol, 5 mM 1,4-Dithio-DL-threitol, 0.005% Brij-35, 5 μg/ml sheared salmon sperm DNA, 500 pM E. coli ParC, 500 pM E. coli ParE, 160 μM ATP, and test compound in dimethylsulfoxide. An IC50 measurement of compound potency for each compound can be determined from reactions performed in the presence of 10 different compound concentrations.
S. aureus GyrB ATPase Inhibition Activity: Compounds may be tested for inhibition of S. aureus GyrB ATPase activity using an ammonium molybdate/malachite green-based phosphate detection assay (Lanzetta, P. A., L. J. Alvarez, P. S. Reinach, and O. A. Candia, 1979, 100: 95-97). Assays are performed in multiwell plates in 30 μl reactions containing: 50 mM Hepes buffer pH 7.5, 75 mM ammonium acetate, 8.0 mM magnesium chloride, 0.5 mM ethylenediaminetetraacetic acid, 5% glycerol, 1.0 mM 1,4-Dithio-DL-threitol, 200 nM bovine serum albumin, 1.0 μg/ml sheared salmon sperm DNA, 250 pM E. coli GyrA, 250 pM S. aureus GyrB, 250 μM ATP, and test compound in dimethylsulfoxide. Reactions are quenched with 30 μl of ammonium molybdate/malachite green detection reagent containing 1.2 mM malachite green hydrochloride, 8.5 mM ammonium molybdate tetrahydrate, and 1 M hydrochloric acid. Plates are read in an absorbance plate reader at 650 nm and percent inhibition values can be calculated using dimethylsulfoxide (2%)-containing reactions as 0% inhibition and EDTA-containing (2.4 μM) reactions as 100% inhibition controls. An IC50 measurement of compound potency for each compound can be determined from reactions performed in the presence of 10 different compound concentrations.
S. pneumoniae Topoisomerase IV ATPase Inhibition Activity: Compounds may be tested for inhibition of S. pneumoniae ParE ATPase activity using an ammonium molybdate/malachite green-based phosphate detection assay (Lanzetta, P. A., L. J. Alvarez, P. S. Reinach, and O. A. Candia, 1979, 100: 95-97). Assays are performed in multiwell plates in 30 μl reactions containing: 20 mM Tris buffer pH 8.0, 50 mM ammonium acetate, 8.0 mM magnesium chloride, 0.5 mM ethylenediaminetetraacetic acid, 5% glycerol, 5 mM 1,4-Dithio-DL-threitol, 0.005% Brij-35, 5 μg/ml sheared salmon sperm DNA, 1.25 nM S. pneumoniae ParE, 160 μM ATP, and test compound in dimethylsulfoxide. Reactions are quenched with 30 μl of ammonium molybdate/malachite green detection reagent containing 1.2 mM malachite green hydrochloride, 8.5 mM ammonium molybdate tetrahydrate, and 1 M hydrochloric acid. Plates are read in an absorbance plate reader at 650 nm and percent inhibition values are calculated using dimethylsulfoxide (2%)-containing reactions as 0% inhibition and EDTA-containing (20 μM) reactions as 100% inhibition controls. An IC50 measurement of compound potency for each compound can be determined from reactions performed in the presence of 10 different compound concentrations.
Many of the compounds of the invention were tested in an assay substantially similar to the assays described above for measuring the inhibition of E.coli GyrB ATPase, E. coli Topoisomerase IV ATPase, S. aureus GyrB ATPase, and S. pneumoniae Topoisomerase IV ATPase, and had IC50 values of <200 μM in one or more assays.
The compounds of the examples (Ex) were tested in an assay substantially similar to the assay described above for measuring the inhibition of S. pneumoniae Topoisomerase IV ATPase and were found to have a percent inhibition (% Inh) of S. pneumoniae Topoisomerase IV ATPase as shown in the table below.
Compounds may be tested for antimicrobial activity by susceptibility testing in liquid media. Compounds may be dissolved in dimethylsulfoxide and tested in 10 doubling dilutions in the susceptibility assays. The organisms used in the assay may be grown overnight on suitable agar media and then suspended in a liquid medium appropriate for the growth of the organism. The suspension can be a 0.5 McFarland and a further 1 in 10 dilution can be made into the same liquid medium to prepare the final organism suspension in 100 μL. Plates can be incubated under appropriate conditions at 37° C. for 24 hrs prior to reading. The Minimum Inhibitory Concentration (MIC) may be determined as the lowest drug concentration able to reduce growth by 80% or more.
In an assay comparable to the above, compounds of the invention had MICs as shown in the table below:
According to a further feature of the invention there is provided a compound of the formula (I), or a pharmaceutically-acceptable salt thereof, for use in a method of treatment of the human or animal body by therapy.
In one embodiment, the invention provides a method of treating a bacterial infection in an animal, such as a human, comprising administering to the animal or human an effective amount of a compound of any one of formulas (I), or a pharmaceutically acceptable salt thereof.
We have found that compounds of the present invention inhibit bacterial DNA gyrase and/or topoisomerase IV and are therefore of interest for their antibacterial effects. In one aspect of the invention the compounds of the invention inhibit bacterial DNA gyrase and are therefore of interest for their antibacterial effects. In one aspect of the invention, the compounds of the invention inhibit topoisomerase IV and are therefore of interest for their antibacterial effects. In one aspect of the invention, the compounds of the invention inhibit both DNA gyrase and topoisomerase IV and are therefore of interest for their antibacterial effects. Thus, the compounds of the invention are useful in treating or preventing bacterial infections.
In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Acinetobacter baumanii. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Acinetobacter haemolyticus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Acinetobacter junii. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Acinetobacter johnsonii. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Acinetobacter lwoffi. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Bacteroides bivius. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Bacteroides fragilis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Burkholderia cepacia. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Campylobacter jejuni. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Chlamydia pneumoniae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Chlamydia urealyticus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Chlamydophila pneumoniae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Clostridium difficile. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterobacter aerogenes. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterobacter cloacae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterococcus faecalis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterococcus faecium. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Escherichia coli. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Gardnerella vaginalis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Haemophilus parainfluenzae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Haemophilus influenzae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Helicobacter pylori. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Klebsiella pneumoniae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Legionella pneumophila. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Methicillin-resistant Staphylococcus aureus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Methicillin-susceptible Staphylococcus aureus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Moraxella catarrhalis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Morganella morganii. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Mycoplasma pneumoniae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Neisseria gonorrhoeae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Penicillin-resistant Streptococcus pneumoniae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Penicillin-susceptible Streptococcus pneumoniae.In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus magnus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus micros. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus anaerobius. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus asaccharolyticus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus prevotii. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus tetradius. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus vaginalis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Proteus mirabilis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Pseudomonas aeruginosa. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Quinolone-Resistant Staphylococcus aureus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Quinolone-Resistant Staphylococcus epidermis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Salmonella typhi. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Salmonella paratyphi. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Salmonella enteritidis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Salmonella typhimurium. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Serratia marcescens. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Staphylococcus aureus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Staphylococcus epidermidis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Staphylococcus saprophyticus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Streptoccocus agalactiae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Streptococcus pneumoniae. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Streptococcus pyogenes. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Stenotrophomonas maltophilia. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Ureaplasma urealyticum. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Vancomycin-Resistant Enterococcus faecium. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Vancomycin-Resistant Enterococcus faecalis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Vancomycin-Resistant Staphylococcus aureus. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Vancomycin-Resistant Staphylococcus epidermis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Mycobacterium tuberculosis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Clostridium perfringens. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Klebsiella oxytoca. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Neisseria miningitidis. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Fusobacterium spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptococcus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Proteus vulgaris. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Coagulase-negative Staphylococcus (including Staphylococcus lugdunensis, Staphylococcus capitis, Staphylococcus hominis, and Staphylococcus saprophyticus).
In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Acinetobacter spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Bacteroides spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Burkholderia spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Campylobacter spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Chlamydia spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Chlamydophila spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Clostridium spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterobacter spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterococcus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Escherichia spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Gardnerella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Haemophilus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Helicobacter spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Klebsiella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Legionella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Moraxella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Morganella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Mycoplasma spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Neisseria spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Peptostreptococcus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Proteus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Pseudomonas spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Salmonella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Serratia spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Staphylococcus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Streptoccocus spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Stenotrophomonas spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Ureaplasma spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by aerobes. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by obligate anaerobes. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by facultative anaerobes. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by gram-positive bacteria. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by gram-negative bacteria. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by gram-variable bacteria. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by atypical respiratory pathogens. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Enterics. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Shigella spp. In one aspect of the invention an “infection” or “bacterial infection” refers to an infection caused by Citrobacter.
In one aspect of the invention “infection” or “bacterial infection” refers to a gynecological infection. In one aspect of the invention “infection” or “bacterial infection” refers to a respiratory tract infection (RTI). In one aspect of the invention “infection” or “bacterial infection” refers to a sexually transmitted disease. In one aspect of the invention “infection” or “bacterial infection” refers to a urinary tract infection. In one aspect of the invention “infection” or “bacterial infection” refers to acute exacerbation of chronic bronchitis (ACEB). In one aspect of the invention “infection” or “bacterial infection” refers to acute otitis media. In one aspect of the invention “infection” or “bacterial infection” refers to acute sinusitis. In one aspect of the invention “infection” or “bacterial infection” refers to an infection caused by drug resistant bacteria. In one aspect of the invention “infection” or “bacterial infection” refers to catheter-related sepsis. In one aspect of the invention “infection” or “bacterial infection” refers to chancroid. In one aspect of the invention “infection” or “bacterial infection” refers to chlamydia. In one aspect of the invention “infection” or “bacterial infection” refers to community-acquired pneumonia (CAP). In one aspect of the invention “infection” or “bacterial infection” refers to complicated skin and skin structure infection. In one aspect of the invention “infection” or “bacterial infection” refers to uncomplicated skin and skin structure infection. In one aspect of the invention “infection” or “bacterial infection” refers to endocarditis. In one aspect of the invention “infection” or “bacterial infection” refers to febrile neutropenia. In one aspect of the invention “infection” or “bacterial infection” refers to gonococcal cervicitis. In one aspect of the invention “infection” or “bacterial infection” refers to gonococcal urethritis. In one aspect of the invention “infection” or “bacterial infection” refers to hospital-acquired pneumonia (HAP). In one aspect of the invention “infection” or “bacterial infection” refers to osteomyelitis. In one aspect of the invention “infection” or “bacterial infection” refers to sepsis. In one aspect of the invention “infection” or “bacterial infection” refers to syphilis. In one aspect of the invention “infection” or “bacterial infection” refers to ventilator-associated pneumonia. In one aspect of the invention “infection” or “bacterial infection” refers to intraabdominal infections. In one aspect of the invention “infection” or “bacterial infection” refers to gonorrhoeae. In one aspect of the invention “infection” or “bacterial infection” refers to meningitis. In one aspect of the invention “infection” or “bacterial infection” refers to tetanus. In one aspect of the invention “infection” or “bacterial infection” refers to tuberculosis.
In one embodiment, it is expected that the compounds of the present invention will be useful in treating bacterial infections including, but not limited to community-acquired pneumoniae, hospital-acquired pneumoniae, skin & skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections and infections caused by drug resistant bacteria such as Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococci.
According to a further feature of the present invention there is provided a method for producing an antibacterial effect in a warm blooded animal, such as man, in need of such treatment, which comprises administering to said animal an effective amount of a compound of the present invention, or a pharmaceutically-acceptable salt thereof.
According to a further feature of the invention there is provided a method for inhibition of bacterial DNA gyrase and/or topoisomerase IV in a warm-blooded animal, such as a human being, in need of such treatment which comprises administering to said animal an effective amount of a compound of formula (I), or a pharmaceutically acceptable salt thereof as defined hereinbefore.
According to a further feature of the invention there is provided a method of treating a bacterial infection in a warm-blooded animal, such as a human being, in need of such treatment which comprises administering to said animal an effective amount of a compound of formula (I), or a pharmaceutically acceptable salt thereof as defined hereinbefore.
According to a further feature of the invention there is provided a method of treating a bacterial infection selected from community-acquired pneumoniae, hospital-acquired pneumoniae, skin & skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections and infections caused by drug resistant bacteria such as Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococciin a warm-blooded animal, such as a human being, in need of such treatment which comprises administering to said animal an effective amount of a compound of formula (I), or a pharmaceutically acceptable salt thereof as defined hereinbefore.
A further feature of the present invention is a compound of formula (I), and pharmaceutically acceptable salts thereof for use as a medicament. Suitably the medicament is an antibacterial agent.
According to a further aspect of the invention there is provided the use of a compound of formula (I), or a pharmaceutically acceptable salt thereof in the manufacture of a medicament for use in the production of an anti-bacterial effect in a warm-blooded animal such as a human being.
According to a further aspect of the invention there is provided the use of a compound of formula (I), or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for use in inhibition of bacterial DNA gyrase and/or topoisomerase IV in a warm-blooded animal such as a human being.
Thus according to a further aspect of the invention there is provided the use of a compound of formula (I), or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for use in the treatment of a bacterial infection in a warm-blooded animal such as a human being.
Thus according to a further aspect of the invention there is provided the use of a compound of formula (I), or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for use in the treatment of a bacterial infection selected from community-acquired pneumoniae, hospital-acquired pneumoniae, skin & skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections and infections caused by drug resistant bacteria such as Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococci in a warm-blooded animal such as a human being.
According to a further aspect of the invention there is provided a compound of formula (I), or a pharmaceutically acceptable salt thereof, for use in the production of an anti-bacterial effect in a warm-blooded animal such as a human being.
According to a further aspect of the invention there is provided a compound of formula (I), or a pharmaceutically acceptable salt thereof, for use in inhibition of bacterial DNA gyrase and/or topoisomerase IV in a warm-blooded animal such as a human being.
Thus according to a further aspect of the invention there is provided a compound of formula (I), or a pharmaceutically acceptable salt thereof, for use in the treatment of a bacterial infection in a warm-blooded animal such as a human being.
Thus according to a further aspect of the invention there is provided a compound of formula (I), or a pharmaceutically acceptable salt thereof, for use in the treatment of a bacterial infection selected from community-acquired pneumoniae, hospital-acquired pneumoniae, skin & skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections and infections caused by drug resistant bacteria such as Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococci in a warm-blooded animal such as a human being.
In order to use a compound of the formula (I), or a pharmaceutically-acceptable salt thereof, (hereinafter in this section relating to pharmaceutical composition “a compound of this invention”) for the therapeutic (including prophylactic) treatment of mammals including humans, in particular in treating infection, it is normally formulated in accordance with standard pharmaceutical practice as a pharmaceutical composition.
Therefore in another aspect the present invention provides a pharmaceutical composition which comprises a compound of the formula (I), or a pharmaceutically-acceptable salt thereof, and a pharmaceutically-acceptable diluent or carrier.
According to a further aspect of the invention there is provided a pharmaceutical composition which comprises a compound of formula (I), as defined hereinbefore or a pharmaceutically acceptable salt thereof, in association with a pharmaceutically acceptable excipient or carrier for use in producing an anti-bacterial effect in an warm-blooded animal, such as a human being.
According to a further aspect of the invention there is provided a pharmaceutical composition which comprises a compound of formula (I), as defined hereinbefore or a pharmaceutically acceptable salt thereof, in association with a pharmaceutically acceptable excipient or carrier for use in inhibition of bacterial DNA gyrase and/or topoisomerase IV in an warm-blooded animal, such as a human being.
According to a further aspect of the invention there is provided a pharmaceutical composition which comprises a compound of formula (I), as defined hereinbefore or a pharmaceutically acceptable salt thereof, in association with a pharmaceutically acceptable excipient or carrier for use in the treatment of a bacterial infection in an warm-blooded animal, such as a human being.
According to a further aspect of the invention there is provided a pharmaceutical composition which comprises a compound of formula (I), as defined hereinbefore or a pharmaceutically acceptable salt thereof, in association with a pharmaceutically acceptable excipient or carrier for use in the treatment of a bacterial infection selected from community-acquired pneumoniae, hospital-acquired pneumoniae, skin & skin structure infections, acute exacerbation of chronic bronchitis, acute sinusitis, acute otitis media, catheter-related sepsis, febrile neutropenia, osteomyelitis, endocarditis, urinary tract infections and infections caused by drug resistant bacteria such as Penicillin-resistant Streptococcus pneumoniae, methicillin-resistant Staphylococcus aureus, methicillin-resistant Staphylococcus epidermidis and Vancomycin-Resistant Enterococci in an warm-blooded animal, such as a human being.
The compositions of the invention may be in a form suitable for oral use (for example as tablets, lozenges, hard or soft capsules, aqueous or oily suspensions, emulsions, dispersible powders or granules, syrups or elixirs), for topical use (for example as creams, ointments, gels, or aqueous or oily solutions or suspensions), for administration by inhalation (for example as a finely divided powder or a liquid aerosol), for administration by insufflation (for example as a finely divided powder) or for parenteral administration (for example as a sterile aqueous or oily solution for intravenous, subcutaneous, intramuscular or intramuscular dosing or as a suppository for rectal dosing).
The compositions of the invention may be obtained by conventional procedures using conventional pharmaceutical excipients, well known in the art. Thus, compositions intended for oral use may contain, for example, one or more coloring, sweetening, flavoring and/or preservative agents.
Suitable pharmaceutically acceptable excipients for a tablet formulation include, for example, inert diluents such as lactose, sodium carbonate, calcium phosphate or calcium carbonate, granulating and disintegrating agents such as corn starch or algenic acid; binding agents such as starch; lubricating agents such as magnesium stearate, stearic acid or talc; preservative agents such as ethyl or propyl p-hydroxybenzoate, and anti-oxidants, such as ascorbic acid. Tablet formulations may be uncoated or coated either to modify their disintegration and the subsequent absorption of the active ingredient within the gastrointestinal tract, or to improve their stability and/or appearance, in either case, using conventional coating agents and procedures well known in the art.
Compositions for oral use may be in the form of hard gelatin capsules in which the active ingredient is mixed with an inert solid diluent, for example, calcium carbonate, calcium phosphate or kaolin, or as soft gelatin capsules in which the active ingredient is mixed with water or an oil such as peanut oil, liquid paraffin, or olive oil.
Aqueous suspensions generally contain the active ingredient in finely powdered form together with one or more suspending agents, such as sodium carboxymethylcellulose, methylcellulose, hydroxypropylmethylcellulose, sodium alginate, polyvinyl-pyrrolidone, gum tragacanth and gum acacia; dispersing or wetting agents such as lecithin or condensation products of an alkylene oxide with fatty acids (for example polyoxethylene stearate), or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and a hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with long chain aliphatic alcohols, for example heptadecaethyleneoxycetanol, or condensation products of ethylene oxide with partial esters derived from fatty acids and a hexitol such as polyoxyethylene sorbitol monooleate, or condensation products of ethylene oxide with partial esters derived from fatty acids and hexitol anhydrides, for example polyethylene sorbitan monooleate. The aqueous suspensions may also contain one or more preservatives (such as ethyl or propyl p-hydroxybenzoate, anti-oxidants (such as ascorbic acid), colouring agents, flavouring agents, and/or sweetening agents (such as sucrose, saccharine or aspartame).
Oily suspensions may be formulated by suspending the active ingredient in a vegetable oil (such as arachis oil, olive oil, sesame oil or coconut oil) or in a mineral oil (such as liquid paraffin). The oily suspensions may also contain a thickening agent such as beeswax, hard paraffin or cetyl alcohol. Sweetening agents such as those set out above, and flavouring agents may be added to provide a palatable oral preparation. These compositions may be preserved by the addition of an anti-oxidant such as ascorbic acid.
Dispersible powders and granules suitable for preparation of an aqueous suspension by the addition of water generally contain the active ingredient together with a dispersing or wetting agent, suspending agent and one or more preservatives. Suitable dispersing or wetting agents and suspending agents are exemplified by those already mentioned above. Additional excipients such as sweetening, flavoring and coloring agents, may also be present.
The pharmaceutical compositions of the invention may also be in the form of oil-in-water emulsions. The oily phase may be a vegetable oil, such as olive oil or arachis oil, or a mineral oil, such as for example liquid paraffin or a mixture of any of these. Suitable emulsifying agents may be, for example, naturally-occurring gums such as gum acacia or gum tragacanth, naturally-occurring phosphatides such as soya bean, lecithin, an esters or partial esters derived from fatty acids and hexitol anhydrides (for example sorbitan monooleate) and condensation products of the said partial esters with ethylene oxide such as polyoxyethylene sorbitan monooleate. The emulsions may also contain sweetening, flavoring and preservative agents.
Syrups and elixirs may be formulated with sweetening agents such as glycerol, propylene glycol, sorbitol, aspartame or sucrose, and may also contain a demulcent, preservative, flavoring and/or coloring agent.
The pharmaceutical compositions may also be in the form of a sterile injectable aqueous or oily suspension, which may be formulated according to known procedures using one or more of the appropriate dispersing or wetting agents and suspending agents, which have been mentioned above. A sterile injectable preparation may also be a sterile injectable solution or suspension in a non-toxic parenterally-acceptable diluent or solvent, for example a solution in 1,3-butanediol.
Compositions for administration by inhalation may be in the form of a conventional pressurized aerosol arranged to dispense the active ingredient either as an aerosol containing finely divided solid or liquid droplets. Conventional aerosol propellants such as volatile fluorinated hydrocarbons or hydrocarbons may be used and the aerosol device is conveniently arranged to dispense a metered quantity of active ingredient.
For further information on formulation the reader is referred to Chapter 25.2 in Volume 5 of Comprehensive Medicinal Chemistry (Corwin Hansch; Chairman of Editorial Board), Pergamon Press 1990.
The amount of active ingredient that is combined with one or more excipients to produce a single dosage form will necessarily vary depending upon the host treated and the particular route of administration. For example, a formulation intended for oral administration to humans will generally contain, for example, from 0.5 mg to 2 g of active agent compounded with an appropriate and convenient amount of excipients which may vary from about 5 to about 98 percent by weight of the total composition. Dosage unit forms will generally contain about 1 mg to about 500 mg of an active ingredient. For further information on Routes of Administration and Dosage Regimes the reader is referred to Chapter 25.3 in Volume 5 of Comprehensive Medicinal Chemistry (Corwin Hansch; Chairman of Editorial Board), Pergamon Press 1990.
The compounds of the invention described herein may be applied as a sole therapy or may involve, in addition to a compound of the invention, one or more other substances and/or treatments. Such conjoint treatment may be achieved by way of the simultaneous, sequential or separate administration of the individual components of the treatment. Where the administration is sequential or separate, the delay in administering the second component should not be such as to lose the beneficial effect of the combination. Suitable classes and substances may be selected from one or more of the following:
i) other antibacterial agents for example macrolides e.g. erythromycin, azithromycin or clarithromycin; quinolones e.g. ciprofloxacin or levofloxacin; B-lactams e.g. penicillins e.g. amoxicillin or piperacillin; cephalosporins e.g. ceftriaxone or ceftazidime; carbapenems, e.g. meropenem or imipenem etc; aminoglycosides e.g. gentamicin or tobramycin; or oxazolidinones; and/or
ii) anti-infective agents for example, an antifungal triazole e.g. or amphotericin; and/or
iii) biological protein therapeutics for example antibodies, cytokines, bactericidal/permeability-increasing protein (BPI) products; and/or
iv) efflux pump inhibitors.
Therefore, in a further aspect of the invention there is provided a compound of the formula (I), or a pharmaceutically acceptable salt thereof, and a chemotherapeutic agent selected from:
i) one or more additional antibacterial agents; and/or
ii) one or more anti-infective agents; and/or
iii) biological protein therapeutics for example antibodies, cytokines, bactericidal/permeability-increasing protein (BPI) products; and/or
iv) one or more efflux pump inhibitors.
In another embodiment, the invention relates to a method of treating a bacterial infection in an animal, such as a human, comprising administering to the animal an effective amount of a compound of formula (I), or a pharmaceutically acceptable salt thereof, and a chemotherapeutic agent selected from:
i) one or more additional antibacterial agents; and/or
ii) one or more anti-infective agents; and/or
iii) biological protein therapeutics for example antibodies, cytokines, bactericidal/permeability-increasing protein (BPI) products; and/or
iv) one or more efflux pump inhibitors.
As stated above the size of the dose required for the therapeutic or prophylactic treatment of a particular disease state will necessarily be varied depending on the host treated, the route of administration, the severity of the illness being treated, and whether or not an additional chemotherapeutic agent is administered in combination with a compound of the invention. Preferably a daily dose in the range of 1-50 mg/kg is employed. However the daily dose will necessarily be varied depending upon the host treated, the particular route of administration, the severity of the illness being treated, and whether or not an additional chemotherapeutic agent is administered in combination with a compound of the invention. Accordingly the optimum dosage may be determined by the practitioner who is treating any particular patient.
As noted above, one embodiment of the present invention is directed to treating or preventing diseases caused by bacterial infections, wherein the bacteria comprise a GyrB ATPase or topoisomerase IV ATPase enzyme. “Treating a subject with a disease caused by a bacterial infection” includes achieving, partially or substantially, one or more of the following: the reducing or amelioration of the progression, severity and/or duration of the infection, arresting the spread of an infection, ameliorating or improving a clinical symptom or indicator associated with a the infection (such as tissue or serum components), and preventing the reoccurrence of the infection.
As used herein, the terms “preventing a bacterial infection” refer to the reduction in the risk of acquiring the infection, or the reduction or inhibition of the recurrence of the infection. In a preferred embodiment, a compound of the invention is administered as a preventative measure to a patient, preferably a human, before a surgical procedure is preformed on the patient to prevent infection.
As used herein, the term “effective amount” refers to an amount of a compound of this invention for treating or preventing a bacterial infection is an amount which is sufficient to prevent the onset of an infection, reduce or ameliorate the severity, duration, or progression, of an infection, prevent the advancement of an infection, cause the regression of an infection, prevent the recurrence, development, onset or progression of a symptom associated with an infection, or enhance or improve the prophylactic or therapeutic effect(s) of another therapy.
In addition to its use in therapeutic medicine, compounds of formula (I), and their pharmaceutically acceptable salts, are also useful as pharmacological tools in the development and standardization of in-vitro and in-vivo test systems for the evaluation of the effects of inhibitors of DNA gyrase and/or topoisomerase IV in laboratory animals such as cats, dogs, rabbits, monkeys, rats and mice, as part of the search for new therapeutic agents.
In the above pharmaceutical composition, process, method, use and medicament manufacture features, the alternative and particular embodiments of the compounds of the invention described herein also apply.
The invention is now illustrated but not limited by the following Examples in which unless otherwise stated:
ACN is acetonitrile;
CDCl3 is deuterated chloroform;
DBU is 1,8-diazabicyclo[5.4.0]undec-7-ene;
DCM is dichloromethane;
DIEA is diisopropyl ethylamine;
DMF is N,N-dimethylformamide;
DMSO is dimethylsulfoxide;
EDC is 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide;
EtOAc is ethyl acetate;
EtOH is ethanol;
HATU is N-[(dimethylamino)-1H,2,3-triazolo]4,5-b-]pyridin-1-ylmethylene]-N-methylmethanaminium hexafluorophosphate N-oxide;
HOBT is 1-hydroxybenzotriazole;
MeOH is methanol;
MS is mass spectroscopy;
NMP is N-Methylpyrrolidone;
RT or rt is room temperature;
SM is starting material;
T3P is n-propyl phosphonic acid cyclic anhydride
TBTU is O-(Benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium tetrafluoroborate;
TFA is trifluoroacetic acid;
TFAA is trifluoroacetic anhydride;
THF is tetrahydrofuran;
To a stirred solution of N,N-dimethyl-propane-1,3-diamine (40 mmol, 5 mL) in dioxane (40 mL) at room temperature under nitrogen atmosphere was added 5-bromo-2,4-dichloro-pyrimidine (6.6 g, 30 mmol) as a solid. Further dilution (ethyl acetate 30 mL) became necessary as the reaction progressed. The mixture was stirred overnight; the un-reacted hydrochloride salt of N,N-dimethyl-propane-1,3-diamine was removed by filtration. The filtrate was concentrated to give the title compound as a yellow solid in 86% yield (7.6 g).
MS(ES): 293.1(M) and 295.1(M+2) for C9H14BrClN4.
1H-NMR (400 MHz, CDCl3): δ 1.77-1.80 (m, 2H), 2.32 (s, 6H), 2.56 (t, J=5.76 Hz, 2H), 3.60 (dt, J=9.36, 4.68 Hz, 2H), 8.05 (s, 1H), 8.7 (br s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 1 using 5-bromo-2,4-dichloro-pyrimidine and the starting material (SM) indicated.
(5-Bromo-2- chloro- pyrimidin-4-yl)- propyl-amine
1H NMR 400 MHz, DMSO-d6: δ 0.9 (m, 3H),1.5-1.6 (m, 2H), 3.28-3.33 (m, 2H), 7.74 (br s, 1H), 8.2 (s, 1H).
1-[3-(5-Bromo- 2-chloro- pyrimidin-4- ylamino)- propyl]- pyrrolidin-2- one
N′-(5-Bromo-2- chloro- pyrimidin-4-yl)- N,N-dimethyl- ethane-1,2- diamine
N-[2-(5-Bromo- 2-chloro- pyrimidin-4- ylamino)- ethyl]- acetamide
(5-Bromo-2- chloro- pyrimidin-4-yl)- (pyridin-2- ylmethyl)- amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (pyridin-3- ylmethyl)- amine HCl salt
(5-Bromo-2- chloro- pyrimidin-4-yl)- (pyridin-4- ylmethyl)- amine HCl salt
3-(5-Bromo-2- chloro- pyrimidin-4- ylamino)- propionamide
1H NMR 300 MHz, DMSO-d6: δ 2.37 (t, J = 7.2 Hz, 2H), 3.50-3.56 (m, 2H), 6.91 (br s, 1H), 7.39 (br s, 1H), 7.70 (br s, 1H), 8.23 (s, 1H).
(5-Bromo-2- chloro- pyrimidin-4-yl)- (2-morpholin-4- yl-ethyl)-amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (2-pyridin-2-yl- ethyl)-amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (2-pyridin-3-yl- ethyl)-amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (2-pyridin-4-yl- ethyl)-amine HCl salt
(5-Bromo-2- chloro- pyrimidin-4-yl)- [2-(1,1-dioxo- 116- thiomorpholin- 4-yl)-ethyl]- amine
(5-Bromo-2- chloro-4- pyrimidin-4-yl)- (2-methoxy- ethyl)-amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (2-isopropoxy- ethyl)-amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (furan-2- ylmethyl)- amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- (2-phenoxy- ethyl)-amine
Methyl (2R)-2- [(5-bromo-2- chloropyrimidin- 4- yl)amino]pro- panoate
(1H-Benzoimidazol- 2-ylmethyl)-(5- bromo-2- chloro- pyrimidin-4-yl)- amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- isopropyl-amine
MS(ES): 279 (M + H) for C8H9BrClN3O. 300 MHz, CDCl3 δ: 1.11 (m, 1H), 2.33 (m, 1H), 3.69-4.00 (m, 4H), 4.68 (br. m, 1H), 5.56 (br. s, 1H), 8.08 (s, 1H).
(5-Bromo-2- chloro- pyrimidin-4-yl)- (3-morpholin-4- yl-propyl)- amine
(5-Bromo-2- chloro- pyrimidin-4-yl)- [3-(1,1-dioxo- 116- thiomorpholin- 4-yl)-propyl]- amine
The following intermediates were prepared using the general method described above for Intermediate 1 using the starting materials (SM) indicated.
4-(2,5- dichloropyridin-4- yl)morpholine
A solution of N′-(5-Bromo-2-chloro-pyrimidin-4-yl)-N,N-dimethyl-propane-1,3-diamine (Intermediate 1, 10 g, 34 mmol), 3-chloro-4-fluoroaniline (34 mmol, 4.95 g) and 2.6 M HCl in 1,4-dioxane (40 mL) was warmed to 100° C. with constant stirring. The reaction was monitored by TLC. Upon completion of reaction, the mixture was cooled to room temperature. The white solid was filtered off, washed with n-butanol and ether to afford the product as a fluffy white solid in 73% yield (24 mmol; 10 g).
MS(ES): 402 (M) and 404 (M+2) for C15H18BrClFN5
1H-NMR (400 MHz, DMSO-d6): 1.95-1.98 (m, 2H), 2.72 (s, 3H), 2.73 (s, 3.03-3.07 (m, 2H), 3.43-3.48 (m, 2H), 7.37 (t, J=9.20 Hz, 1H), 7.54 (m, 1H), 8.02 (dd, J=6.80, 2.40 Hz, 1H), 8.13 (s, 1H), 9.80 (s, 1H), 10 (s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 26 using N′-(5-Bromo-2-chloro-pyrimidin-4-yl)-N,N-dimethyl-propane-1,3-diamine Intermediate 1 and the starting material (SM) indicated.
5-Bromo-N2-(3,4- difluoro-phenyl)-N4- (3-dimethylamino- propyl)-pyrimidine- 2,4-diamine hydrochloride salt
5-[5-Bromo-4-(3- dimethylamino- propylamino)- pyrimidin-2- ylamino]-2-methyl- benzonitrile
5-Bromo-N2-(4- chloro-2-methoxy-5- methyl-phenyl)-N4- (3-dimethylamino- propyl)-pyrimidine- 2,4-diamine
5-Bromo-N2-(4- chloro-2,5- dimethoxy-phenyl)- N4-(3- dimethylamino- propyl)-pyrimidine- 2,4-diamine
5-Bromo-N4-(3- dimethylamino- propyl)-N2-(3- methoxy-5- trifluoromethyl- phenyl)-pyrimidine- 2,4-diamine
5-Bromo-N2-(3,5- dichloro-phenyl)-N4- (3-dimethylamino- propyl)-pyrimidine- 2,4-diamine hydrochloride salt
N2-(3,5-Bis- trifluoromethyl- phenyl)-5-bromo-N4- (3-dimethylamino- propyl)-pyrimidine- 2,4-diamine
5-Bromo-N2-(3,5- dimethoxy-phenyl)- N4-(3- dimethylamino- propyl)-pyrimidine- 2,4-diamine hydrochloride salt
The following intermediates were prepared using the general method described above for Intermediate 26 using 3-chloro-4-fluoroaniline and the starting material (SM) indicated.
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-propyl- pyrimidine-2,4- diamine
1-{3-[5-Bromo-2-(3- chloro-4-fluoro- phenylamino)- pyrimidin-4-ylamino]- propyl}-pyrrolidin-2- one
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- dimethylamino-ethyl)- pyrimidine-2,4- diamine
N-{2-[5-Bromo-2-(3- chloro-4-fluoro- phenylamino)- pyrimidin-4-ylamino]- ethyl}-acetamide
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-pyridin-2- ylmethyl-pyrimidine- 2,4-diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(pyridin- 3-ylmethyl)- pyrimidin-2,4- diamine hydrochloride salt
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-pyridin-4- ylmethyl-pyrimidine- 2,4-diamine hydrochloride salt
3-[5-Bromo-2-(3- chloro-4-fluoro- phenylamino)- pyrimidin-4-ylamino]- propionamide
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- morpholin-4-yl- ethyl)-pyrimidin-2,4- diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- pyridin-2-yl-ethyl)- pyrimidine-2,4- diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- pyridin-3-yl-ethyl)- pyrimidine-2,4- diamine
5-Bromo-N2-(3- chloro-4- phenyl)-N4-(2- pyridin-4-yl-ethyl)- pyrimidin-2,4- diamine hydrochloride salt
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-[2-(1,1- dioxo-1λ6- thiomorpholin-4-yl)- ethyl]-pyrimidine-2,4- diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(3- morpholin-4-yl- propyl)-pyrimidine- 2,4-diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-[3-(1,1- dioxo-1λ6- thiomorpholin-4-yl)- propyl]-pyrimidine- 2,4-diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- methoxy-ethyl)- pyrimidin-2,4- diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- isopropoxy-ethyl)- pyrimidine-2,4- diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(furan-2- ylmethyl)-pyrimidine- 2,4-diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-(2- phenoxy-ethyl)- pyrimidine-2,4- diamine
methyl (2R)-2-[[2-[(3- chloro-4- fluorophenyl)amino]- 5-bromo-pyrimidin-4- yl]amino]propanoate
N4-(1H- Benzoimidazol-2- ylmethyl)-5-bromo- N2-(3-chloro-4-fluoro- phenyl)-pyrimidine- 2,4-diamine
5-Bromo-N2-(3- chloro-4-fluoro- phenyl)-N4-isopropyl- pyrimidine-2,4- diamiune
The following intermediates were prepared using the general method described above for Intermediate 26 using the starting materials (SM) indicated
5-bromo-N2-(3,5- dimethoxyphenyl)-N4-(2- (pyridin-4-yl)ethyl) pyrimidin-2,4-diamine
(R)-5-bromo-N2-(3,5- dimethoxyphenyl)-N4- (tetrahydrofuran-3-yl) pyrimidin-2,4-diamine
5-chloro-N-(3,5- dimethoxyphenyl)-4- morpholinopyrimidin-2- amine
To a stirred solution of 5-bromo-2,4-dichloropyrimidine (65 mmol, 15 g) in methanol (150 mL) at room temperature under nitrogen atmosphere, sodium methoxide (72 mmol, 3.91 g) was added portionwise. The mixture was stirred at RT for 4h and the solvent was removed in vacuo. The resulting solid was dissolved in chloroform (2×250 mL), washed with water and brine. The organic layer was dried over sodium sulfate and concentrated under vacuum to yield 5-bromo-2-chloro-4-methoxypyrimidine as a white solid in 92% yield (60.4 mmol, 13.5 g). The compound was taken to the next step without further purification.
MS(ES): 223.0(M) and 224.8(M+2) for C5H4BrClN2O.
1H-NMR (300 MHz, CDCl3): δ 4.11 (s, 3H), 8.44 (s, 1H)
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (Intermediate 60, 60 mmol, 13.5 g) and 3-chloro-4-fluoroaniline (60.3 mmol, 9.23 g) in acetonitrile (140 mL), 4 M HCl in 1,4-dioxane (14 mL) was added dropwise. The resulting solution was refluxed at 100° C. with constant stirring. The solvent was removed in vacuo and the residue was basified with 10% NaHCO3 solution, then extracted with ethyl acetate (2×250 mL). The combined organic layers were washed with water and brine, dried over sodium sulfate and concentrated under vacuum. The residue was purified by column chromatography (silicagel, 60-120 mesh) using 5% EtOAc in hexane to yield (5-bromo-4-methoxy-pyrimidin-2-yl)-(3-chloro-4-fluoro-phenyl)-amine as a white solid in 70% yield (42 mmol, 14 g).
MS(ES): 332 (M) for C11H8BrClFN3O.
1H-NMR (400 MHz, DMSO-d6): δ 4.0 (s, 3H), 7.37 (t, J=9.20 Hz, 1H), 7.62 (ddd, J=9.02, 4.12, 2.84 Hz, 1H), 8.04 (dd, J=6.80, 2.60 Hz, 1H), 8.41 (s, 1H), 9.94 (s, 1H).
(5-Bromo-4-methoxy-pyrimidin-2-yl)-(3-chloro-4-fluoro-phenyl)-amine (Intermediate 61, 12 mmol, 4 g) was dissolved in 30-33% HBr in acetic acid (AcOH, 60 mmol, 13.5 g; 40 mL) and cooled to 0-5° C. 47% aqueous HBr (20 mL) was added and refluxed for 4 h. The reaction mass was cooled to RT and poured over crushed ice. After all of the ice melted, the product was collected by filtration and dried under vacuum to provide 5-bromo-2-(3-chloro-4-fluoroanilino)-pyrimidin-4-one (11.67 mmol, 3.7 g, 97% yield).
MS(ES): 318 (M) and 320 (M+2) for C10H6BrClFN3O.
1H-NMR (400 MHz, DMSO-d6): δ 7.34-7.43 (m, 1H), 7.44-7.45 (m, 1H), 7.91 (dd, J=6.74, 2.56 Hz, 1H), 8.08 (s, 1H), 9.11 (br s, 1H).
A solution of 5-bromo-2-(3-chloro-4-fluoroanilino)-pyrimidin-4-one (Intermediate 62, 18.3 mmol, 6.5 g) in phosphorus oxychloride (21 mL) was heated to reflux for 2 hours, cooled to RT, poured carefully onto a mixture of ice (200 mL) and saturated NaHCO3 (20 mL) with stirring. The product was extracted with EtOAc (2×250 mL). The combined organic layers were washed with water, brine, dried over sodium sulfate, filtered and concentrated under vacuum. The residue was purified by column chromatography (silicagel, 60-120 mesh) using 3% EtOAc in hexane to yield 5-bromo-2-(3-chloro-4-fluoroanilino)-4-chloro-pyrimidine (15 mmol, 5.1 g).
MS(ES): 318 (M) and 320 (M+2) for C10H5BrCl2FN3
1H NMR (400 MHz, DMSO-d6): δ 7.37 (t, J=9.12 Hz, 1H), 7.57 (ddd, J=8.90, 4.19, 2.54 Hz, 1H), 7.93 (dd, J=6.69, 2.54 Hz, 1H), 8.71 (s, 1H), 10.38 (s, 1H).
19F NMR (376 MHz, DMSO-d6): δ-124.12 (s, 1F).
To 500 mg of 5-bromo-4-chloro-N-(3-chloro-4-fluorophenyl)pyrimidin-2-amine (Intermediate 63, 1.48 mmol) in NMP (5 mL), was added N,N-diisopropylethylamine (3.04 mL, 1.78 mmol) and 2-imidazol-1-yl-ethylamine (1.63 mmol, 181 mg) under inert atmosphere. The reaction mixture was heated to 90° C. for 30 min After completion of the reaction, the reaction mixture was quenched with water and extracted with ethyl acetate. The organic layer was washed with brine and dried over anhydrous Na2SO4. The crude mixture was purified by column chromatography using 2% MeOH in CHCl3 to obtain 5-bromo-N2-(3-chloro-4-fluorophenyl)-N4-[2-(1H-imidazol-1-yl)ethyl]pyrimidine-2,4-diamine in 26% yield (0.39 mmol, 160 mg). MS(ES): 411 (M) and 413 (M+2) for C15H13BrClFN6.
1H-NMR (400 MHz, DMSO-d6): δ 3.71 (q, J=6.00 Hz, 2H), 4.22 (t, J=6.20 Hz, 2H), 6.86 (s, 1H), 7.11 (s, 1H), 7.17 (t, J=5.64 Hz, 1H), 7.29 (t, J=9.12 Hz, 1H), 7.53-7.56 (m, 1H), 7.56 (s, 1H), 8.02 (dd, J=2.64, 6.84 Hz, 1H), 8.07 (s, 1H), 9.45 (s, 1H).
5-Bromo-2-chloro-4-(methylthio)pyrimidine (125 mmol, 30 g) was suspended in n-BuOH (300 mL) with 3-chloro-4-fluoroaniline (125 mmol, 18.22 g). The reaction was then treated with 4 N HCl (100 mmol, 25 mL) in dioxane and refluxed at 100° C. for 1.5 h under nitrogen. The reaction was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to afford 29 g of (5-bromo-4-methylsulfanyl-pyrimidin-2-yl)-(3-chloro-4-fluoro-phenyl)-amine as a pale yellow solid (83 mmol, 67%).
MS(ES): 348(M) and 350(M+2) for C11H8BrClFN3S.
1H-NMR 300 MHz DMSO-d6: δ 2.55 (s, 3H), 7.34 (t, J=9.0 Hz, 1H), 7.56-7.59 (m, 1H), 8.08 (t, J=4.5 Hz, 1H), 8.33 (s, 1H), 9.98 (s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 65 using 5-bromo-2-chloro-4-(methylthio)pyrimidine and the starting material (SM) indicated.
5-bromo-N-[3-methoxy-5- (trifluoromethyl)phenyl]- 4-(methylthio)pyrimidin- 2-amine
5-bromo-N-(3,4-difluorophenyl)-4- (methylthio)pyrimidin-2-amine
5-bromo-N-(3-chloro-4-fluorophenyl)- 4-(methylthio)pyrimidin-2- amine
5-Bromo-2-[N-(3-chloro-4-fluorophenyl)]-4-(methylthio)pyrimidin-2-amine (Intermediate 65, 86 mmol, 30 g) was suspended in DCM (450 mL), cooled to 0° C. and 3-chloroperoxybenzoic acid (m-CPBA, 344 mmol, 59 g) was added. The suspension became a solution after stirring at 0° C. for 30 min. The reaction mixture was then allowed to warm up slowly to room temperature. 1N aqueous sodium hydroxide solution (344 mL) was added and the solution was stirred for 10 minutes. The solid which precipitated was filtered off and washed with water, dichloromethane, diethyl ether and dried. The first crop of the title compound, thus obtained, weighed 10 g. The mother liquor was dried over sodium sulfate and concentrated to yield a residue. Diethyl ether was added to the residue and the mixture was stirred for 15 minutes. The ether layer was filtered off. The residual solid was dissolved in CHCl3-MeOH, then hexane was added to this mixture. The solid that precipitated was filtered off and dried. The second crop of the title compound, thus obtained, weighed 3.5 g. The total yield of (5-bromo-4-methanesulfonyl-pyrimidin-2-yl)-(3-chloro-4-fluoro-phenyl)-amine was 41% (35.3 mmol, 13.5 g). MS(ES): 380 (M) for C11H8BrClFN3O2S.
1H-NMR 400 MHz DMSO-d6: δ 3.45 (s, 3H), 7.40 (t, J=9.08 Hz, 1H), 7.55-7.58 (m, 1H), 7.96 (dd, J=6.74, 2.60 Hz, 1H), 8.93 (s, 1H), 10.51 (s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 69 using m-CPBA and the starting material (SM) indicated.
5-Bromo-N-(3-methoxy-5- (trifluoromethyl)phenyl)-4- (methylsulfonyl)pyrimidin- 2-amine
5-Bromo-N-(3,4-difluorophenyl)-4- (methylsulfonyl)pyrimidin-2-amine
5- Bromo-2-[N-(3-chloro-4-fluorophenyl)]-4-(methyl sulfonyl)pyrimidin-2-amine (Intermediate 69, 1 g, 2.63 mmol) was suspended in NMP (5 mL), treated with N,N-diisopropylethylamine (0.5 mL, 3.02 mmol), and 1-(4-amino-piperidin-1-yl)-ethanone (1 eq 2.63 mmol) in a sealed tube. The reaction was heated in the microwave reactor at 100° C. for 30 min. The reaction mixture was added to water and stirred for 15 min. The precipitated solid was filtered and dried to provide the 1-{4-[5-bromo-2-(3-chloro-4-fluoro-phenylamino)-pyrimidin-4-ylamino]-piperidin-1-yl}-ethanone (800 mg).
MS(ES): 442.7 (M) and 444 (M+2) for C17H18BrClFN5O.
400 MHz, DMSO-d6: δ1.4-1.75 (m, 2H), 1.83-1.88 (m, 2H), 2.02 (s, 3H), 2.6-2.63 (m, 1H), 3.11 (t, J=12.00 Hz, 1H), 3.87-3.9 (m, 1H), 4.15-4.19 (m, 1H), 4.42-4.45 (m, 1H), 6.71 (d, J=8.00 Hz, 1H), 7.32 (t, J=9.04 Hz, 1H), 7.49-7.53 (m, 1H), 8.06 (s, 1H), 8.11 (dd, J=6.86, 2.60 Hz, 1H), 9.50 (s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 72 using 5- bromo-2-[N-(3-chloro-4-fluorophenyl)]-4-(methyl sulfonyl)pyrimidin-2-amine (Intermediate 69) and the starting material (SM) indicated.
{2-[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4- ylamino]-ethyl}-carbamic acid tert- butyl ester
5-Bromo-N2-(3-chloro-4-fluoro- phenyl)-N4-(3-morpholin-4-yl- propyl)-pyrimidine-2,4-diamine
5-Bromo-N2-(3-chloro-4-fluoro- phenyl)-N4-(tetrahydrofuran-2- ylmethyl)-pyrimidine-2,4- diamine
[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4- ylamino]-acetic acid ethyl ester
5-Bromo-N2-(3-chloro-4-fluoro- phenyl)-N4-(5-methyl-pyrazin-2- ylmethyl)-pyrimidine-2,4- diamine
1-[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4-yl]- piperidin-4-ol
{1-[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4-yl]- piperidine-3-yl}-methanol
[5-Bromo-4-(4-morpholin-4-yl- piperidin-1-yl)-pyrimidin-2-yl]-(3- chloro-4-fluoro-phenyl)-amine
1-[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4-yl]- piperidine-4-carboxylic acid methylamide
[5-Bromo-4-(4-fluoro-piperidin-1- yl)-pyrimidin-2-yl]-(3-chloro-4-fluoro- phenyl)-amine
[5-Bromo-4-(4-methoxy-piperidin- 1-yl)-pyrimidin-2-yl]-(3-chloro-4- fluoro-phenyl)-amine
1-[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4-yl]- pyrrolidin-3-ol
[5-Bromo-4-(2-methyl-pyrrolidin- 1-yl)-pyrimidin-2-yl]-(3-chloro-4- fluoro-phenyl)-amine
[5-Bromo-4-(2,5-dimethyl- pyrrolidin-1-yl)-pyrimidin-2-yl]-(3- chloro-4-fluoro-phenyl)-amine
(4-Azetidin-1-yl-5-bromo-pyrimidin-2- yl)-(3-chloro-4-fluoro-phenyl)- amine
(4-Azepan-1-yl-5-bromo-pyrimidin-2- yl)-(3-chloro-4-fluoro-phenyl)- amine
Trans-4-[5-Bromo-2-(3-chloro-4- fluoro-phenylamino)- pyrimidin-4-ylamino]- cyclohexanol
N-{1-[5-Bromo-2-(3-chloro-4-fluoro- phenylamino)-pyrimidin-4-yl]- piperidin-4-yl}-acetamide
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-[2-(1H-pyrazol-1- yl)ethyl]pyrimidine-2,4-diamine
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-[2-(4-methylpiperazin-1- yl)ethyl]pyrimidine-2,4-diamine
N4-(3-(1H-benzo[d]imidazol- 2-yl)propyl)-5-bromo-N2-(3-chloro-4- fluorophenyl)pyrimidine-2,4-diamine
N4-(2-(2-aminothiazol-4-yl)ethyl)-5-bromo- N2-(3-chloro-4-fluorophenyl)pyrimidin-2,4-diamine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(2,6- dimethylmorpholino)-pyrimidin-2- amine
(4-(5-bromo-2-(3-chloro-4- fluorophenylamino)pyrimidin-4- yl)piperazin-1-yl)(cyclopropyl)- methanone
tert-Butyl 3-(5-bromo-2-(3-chloro-4- fluorophenylamino)pyrimidin-4- ylamino)propylcarbamate
1-{4-[5-bromo-2-(3-chloro-4- fluorophenylamino)pyrimidin-4- yl]piperazin-1-yl}ethanone
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-(3-(5-methyl-1H- pyrazol-4-yl)propyl)pyrimidine- 2,4-diamine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(piperidin-1- yl)pyrimidin-2-amine
4-(5-bromo-2-(3-chloro-4- fluorophenylamino)pyrimidin-4-yl)- N,N-dimethylpiperazine- 1-carboxamide
N-(3-(5-bromo-2-(3-chloro-4- fluorophenylamino)pyrimidin-4- ylamino)propyl)-5-methylpyrazine-2- carboxamide
(R)-5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-(tetrahydrofuran-3- yl)pyrimidine-2,4-diamine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(pyrrolidin-1- yl)pyrimidin-2-amine
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-((1-methyl-1H- imidazol-5-yl)methyl)pyrimi- dine-2,4-diamine
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-((1-methyl-1H- pyrazol-4-yl)methyl)pyrimi- dine-2,4-diamine
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-(1,3-dimethoxypropan- 2-yl)pyrimidine-2,4-diamine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-[4-(2-methoxyethyl)piperazine-1- yl]pyrimisin-2-amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(4-methylpiperazin-1- yl)pyrimidin-2-amine
tert-butyl 4-[5-bromo-2-(3-chloro-4- fluorophenylamino)pyrimidin-4- yl]piperazine-1-carboxylate
5-Bromo-2-[N-(3-chloro-4-fluorophenyl)]-4-(methylsulfonyl)pyrimidin-2-amine (Intermediate 69, 15.7 mmol, 6 g) was suspended in NMP (30 mL) and treated with N,N-diisopropylethylamine (23.6 mmol, 4 mL) and morpholine (18.9 mmol, 1.64 g) in a 100 mL round-bottomed flask. The reaction was heated to 90° C. for 45 min. The reaction mixture was added to water and stirred for 15 min The precipitated solid was filtered and washed successively with water, diethyl ether and hexanes and dried to afford 4.96 g of the title compound (12.56 mmol, 80%).
MS(ES): 387 (M) and 389 (M+2) for C14H13BrClFN4O.
1H NMR 400 MHz DMSO-d6: δ 3.57-3.59 (m, 4H), 3.71-3.73 (m, 4H), 7.32 (t, J=9.08 Hz, 1H), 7.55 (ddd, J=9.00, 4.18, 2.68 Hz, 1H), 8.04 (dd, J=6.86, 2.64 Hz, 1H), 8.26 (d, J=1.20 Hz, 1H), 9.71 (s, 1H).
A solution of 3,5-dimethyl-1H-pyrazole (554 mg, 5.78 mmol) in DMF (1 ml) was added slowly to a suspension of sodium hydride (60%, 208 mg, 5.52 mmol) in DMF (1 ml) at 0° C. and the resultant mixture was stirred for 25 min. A solution of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(methylsulfonyl)pyrimidin-2-amine (Intermediate 69, 1.0 g, 2.63 mmol) in DMF (2 mL) was added slowly to the reaction mixture, and the mixture was stirred for 1 h. Water was added to the reaction mixture (˜6 mL) and the solid that formed was filtered and dried to yield 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3,5-dimethyl-1H-pyrazol-1-yl)pyrimidin-2-amine (800 mg),
MS(ES): 396 (M) and 398 (M+2) for C15H12BrClFN5
400 MHz, DMSO-d6: δ 2.19 (s, 3H), 2.34 (s, 3H), 6.14 (s, 1H), 7.38 (t, J=9.08 Hz, 1H), 7.54-7.58 (m, 1H), 7.96 (dd, J=2.48, 6.68 Hz, 1H), 8.83 (s, 1H), 10.24 (s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 112 using 5- bromo-2-[N-(3-chloro-4-fluorophenyl)]-4-(methylsulfonyl)pyrimidin-2-amine (Intermediate 69), sodium hydride and the starting material (SM) indicated.
5-bromo-N-(3-chloro-4- fluorophenyl)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(4-chloro-1H- pyrazol-1-yl)pyrimidin-2- amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-[3-(trifluoro- methyl)-1H-pyrazol-1-yl]pyrimidin-2- amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(4,5-dichloro- 1H-imidazol-1-yl)pyrimidin-2- amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(1H-pyrrol-1- yl)pyrimidin-2-amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-(1H-imidazol- 1-yl)pyrimidin-2-amine
The following intermediates were prepared using the general method described above for Intermediate 112 using sodium hydride and the starting materials (SM) indicated.
5-bromo-N2-(3-chloro-4- fluorophenyl)-N4-(3- methoxypropyl)pyrimidine- 2,4-diamine
5-bromo-4-(2,6- dimethylmorpholino)-N- (3-methoxy-5-(trifluoro methyl)phenyl) pyrimidin-2-amine
5-bromo-N2-(3-methoxy-5- (trifluoromethyl)phenyl)- N4-(2-(pyridine-4-yl) ethyl)pyrimidine-2,4- diamine
5-bromo-N-(3,4- difluorophenyl)-4- morpholinopyrimidin-2- amine
A suspension of Intermediate 69 (1.05 mmol, 400 mg), pyrimidine-5-boronic acid (1.68 mmol, 208 mg), tris(dibenzyledeneacetone)dipalladium(0) (10 mol %, 0.1 mmol, 96 mg), 2-dicyclohexyl phosphino-2′,4′,6′-triiso-propyl-1,1′-biphenyl (30 mol %, 0.3 mmol, 148 mg) and sodium carbonate (1.05 mmol, 112 mg) in acetonitrile/water (4:1) was heated to 90° C. for 30 min in an oil bath. The reaction mixture was diluted with ethyl acetate (10 mL) and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent in 20% yield.
MS(ES): 380 (M+1) for C15H11ClFN5O2S.
300 MHz DMSO-d6: δ 3.4 (s, 3H), 7.44 (t, J=9.2 Hz, 1H), 7.63 (brs, 1H), 8.0 (br s, 1H), 8.86 (s, 1H), 8.89 (s, 2H), 9.21(s, 1H), 10.63 (s, 1H).
A suspension of Intermediate 69 (1.31 mmol, 0.5 g), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.38 mmol, 382 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium (II) complex with CH2Cl2 (10 mol %, 0.13 mmol, 107 mg), 2-dicyclohexyl phosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (30 mol %, 0.394 mmol, 188 mg) and sodium carbonate (2.62 mmol, 279 mg) in acetonitrile/water (20 mL: 5 mL) was heated to 90° C. for 5 min in an oil bath under inert atmosphere. After completion of the reaction, as monitored by TLC, the reaction mixture was diluted with EtOAc (30 mL). The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The residue was purified by silica gel column chromatography using hexane:ethyl acetate (3:2) as an eluent. The title compound was obtained in 51% combined yield (0.30 g, 1.33 mmol).
MS (ES): 451 (M+1) for C19H16ClFN4O4S
1H NMR (300 MHz, DMSO-d6): δ 1.34 (t, J =7.08 Hz, 3H), 3.38 (s, 3H), 4.37 (q, J=7.0 Hz, 2H), 7.44 (t, J=8.97 Hz, 1H), 7.64 (m, 1H), 8.0-8.01 (m, 1H), 8.39 (s, 1H), 8.83 (s, 1H), 8.87 (d, J=2.01 Hz, 1H), 9.11 (d, J=1.83 Hz, 1H), 10.59 (s, 1H).
A suspension of Intermediate 69 (2.11 mmol, 800 mg), {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid (2.32 mmol, 510 mg), tris(dibenzylideneacetone)dipalladium(0) (10 mol %, 0.21 mmol, 192 mg), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl 30 mol %, 0.63 mmol, 300 mg) and sodium carbonate (3.15 mmol, 330 mg) in acetonitrile/water (40 mL; 4:1 mixture) was heated to 90° C. for 15-20 min in an oil bath. Acetonitrile was evaporated from the reaction mixture and water was added. The mixture was extracted with ethyl acetate (10 mL), and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using hexane-ethyl acetate (13:7) as an eluent to yield the title compound as a pale yellow solid in 52% yield (0.52 g, 1.08 mmol).
MS(ES): 476 (M+1) for C22H19ClFN3O4S
1H-NMR (400 MHz, DMSO-d6): δ 1.26 (t, J=7.04 Hz, 3H), 3.36 (s, 3H), 4.20 (q, J=7.08 Hz, 2H), 6.68 (d, J=16.04 Hz, 1H), 7.43 (t, J=9.08 Hz, 1H), 7.50 (t, J=7.64 Hz, 1H), 7.56 (d, J=7.76 Hz, 1H), 7.64 (ddd, J=2.72, 4.12, 9.05 Hz, 1H), 7.69 (d, J=16.04 Hz, 1H), 7.77 (d, J=7.68 Hz, 1H), 7.84 (s, 1H), 8.02 (dd, J=2.48, 6.72 Hz, 1H), 8.80 (s, 1H), 10.51 (s, 1H).
To a stirred solution of Intermediate 55 (1 g, 2.23 mmol) and triethylamine (1.24 mL, 8.93 mmol) in dichloromethane (20 mL) under nitrogen atmosphere was added di-t-butyldicarbonate(1.46 g, 6.7 mmol) at 5-10° C. The reaction mixture was stirred overnight at room temperature, then diluted with water (20 mL) and extracted with dichloromethane (2×20 mL). The combined extracts were washed with water (2×20 mL), brine solution, dried over sodium sulfate, filtered and concentrated to give the title compound as a white solid in 83% yield (1.2 g, 1.85 mmol).
MS(ES): 547 (M) and 549 (M+2) for C23H21BrClFN6O2.
1H NMR (300 MHz) DMSO-d6: δ 1.67 (s, 9H), 5.01 (d, J=5.46 Hz, 2H), 7.05 (t, J=9.12 Hz, 1H), 7.27-7.36 (m, 3H), 7.57 (t, J=4.5 Hz, 1H), 7.66 (d, J=7.44 Hz, 1H), 7.78 (t, J=2.4 Hz, 1H), 7.92 (d, J=7.59 Hz, 1H), 8.14 (s, 1H), 9.44 (s, 1H).
A stirred suspension of Intermediate 119 (4.01 g, 10.3 mmol), zinc powder (168 mg, 2.57 mmol), zinc cyanide (784 mg, 6.67 mmol), tris(dibenzylideneacetone)dipalladium (0) (188 mg, 0.210 mmol), 1,1′-bis(diphenylphosphino)ferrocene (230 mg, 0.410 mmol), and zinc acetate (75 mg, 0.41 mmol) in degassed N,N-dimethylformamide (25 mL) was prepared. The vessel was purged with nitrogen gas for one minute. The mixture was placed under an atmosphere of nitrogen atmosphere and heated to 100 degrees C. A check of progress by LCMS after about an hour indicated complete conversion to desired product. Stirring continued while the mixture was allowed to cool to room temperature; the mixture was then diluted with small volumes of water. The dark solution became cloudy with addition of water. Larger volumes were added until a maximum of precipitation was reached. Stirring continued for ten minutes. The solid was collected and washed with water. Normal-phase chromatography (0-3% methanol in methylene chloride) was used to isolate the pure product (3.3 g, 95%).
MS: ES+ 336 for C15H15ClFN5O.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.74-1.90 (m, J=6.76, 6.76, 6.64, 6.40 Hz, 2H) 3.22 (s, 3H) 3.39 (t, J=6.22 Hz, 2H) 3.46 (q, J=6.53 Hz, 2H) 7.33 (t, J=9.04 Hz, 1H) 7.60 (ddd, J=9.04, 4.24, 2.73 Hz, 1H) 7.86 (br. s., 1H) 8.11 (dd, J=6.78, 2.45 Hz, 1H) 8.36 (s, 1H) 9.99 (br. s., 1H)
A stirred solution of Intermediate 127 (750 mg, 2.2 mmol) in methanol (4 mL) and N,N-dimethylformamide (4 mL) was prepared under ambient conditions. The reaction vessel was purged with nitrogen, and the contents were placed under an atmosphere of nitrogen. The mixture was heated to 90 degrees C. At that time 1 mL of a 22 wt % aqueous solution of ammonium sulfide (about 3 mmol ammonium sulfide) was added slowly by syringe. Volumes of a similar size were added every thirty minutes until conversion to desired product was complete as monitored by LCMS. The mixture was allowed to cool to room temperature with stirring. Water (5 mL) was then added very slowly with stirring, precipitating a grey solid. This was collected, washed with water and dried to yield the title compound (768 mg, 93%).
MS: ES+ 369 for C15H17ClFN5OS.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.84 (qd, J=6.22, 6.03 Hz, 2H) 3.24 (s, 3H) 3.44 (t, J=6.03 Hz, 2H) 3.52 (q, J=5.90 Hz, 2H) 7.32 (t, J=9.04 Hz, 1H) 7.52-7.70 (m, 1H) 8.22 (d, J=4.90 Hz, 1H) 8.36 (s, 1H) 9.27 (br. s., 1H) 9.39 (br. s., 1H) 9.64 (br. s., 1H) 9.80 (br. s., 1H).
To a stirred solution of Intermediate 110 (500 mg, 1.30 mmol) in 1,4- dioxane (10 mL) under nitrogen atmosphere was added 4N hydrochloric acid in 1,4-dioxane (3 mL) dropwise. The reaction mixture was stirred at room temperature for 24 h. The reaction mixture was concentrated to give the hydrochloride salt title compound as a white solid (320 mg).
MS(ES): 386 (M) 388 (M+2) for C14H14BrClFN5
1H NMR (300 MHz, DMSO- d6) δ ppm 3.22 (s, 4H) 3.67-3.91 (m, 4H) 7.33 (t, J=9.04 Hz, 1H) 7.41-7.63 (m, 1H) 8.00 (d, J=6.03 Hz, 1H) 8.33 (s, 1H) 9.34 (d, J=20.91 Hz, 1H) 9.83 (s, 1H).
A solution of methanesulfonyl chloride (30 mg, 0.26 mmol) was added to Intermediate 129 (100 mg, 0.26 mmol), triethylamine (0.054 ml, 0.39 mmol) and methylene chloride (1.5 ml) under nitrogen. The resultant mixture was stirred for 1 h and concentrated under vacuum. The residue was chromatographed using 40-70% ethyl acetate/hexane to yield the title compound (88 mg).
MS(ES): 386 (M) 388 (M+2) for C15H16BrClFN5O2S
1H NMR (300 MHz, DMSO- d6) δ ppm 2.92 (s, 3H) 3.12-3.30 (m, 4H) 3.55-3.84 (m, 4H) 7.33 (t, J=9.14 Hz, 1H) 7.47-7.71 (m, 1H) 7.93-8.11 (m, 1H) 8.30 (s, 1H) 9.74 (s, 1H).
6-Bromoquinoline-3-carboxylic acid (2.5 g, 9.92 mmol) was suspended in methyl alcohol (40.2 ml, 991.81 mmol) and treated with sulfuric acid (2.64 ml, 49.59 mmol). The reaction was refluxed overnight. TLC analysis of a small aliquot showed complete reaction. The reaction was cooled to room temperature and concentrated at reduced pressure. The residue was diluted with EtOAc and carefully neutralized with a solution of sodium carbonate. The biphasic suspension was diluted with EtOAc/DCM until all solid dissolved. The layers were then separated, and the organic was washed with brine and dried over sodium sulfate. The solvent was removed at reduced to afford the desired product with good purity. It was used without further purification.
MS(ES): 266 (M), 268 (M+2) for C11H8BrNO2
1H NMR (300 MHz, DMSO-D6) δ ppm 3.95 (s, 3H) 8.03 (d, J=1.13 Hz, 2H) 8.52 (s, 1H) 8.99 (d, J=2.07 Hz, 1H) 9.31 (d, J=2.07 Hz, 1H).
2-Fluoro-5-iodobenzoic acid (3.76 mmol, 1 g) was treated with thionyl chloride (3 mL) and DMF (2 drops). The reaction mixture was heated at 70° C. for 1.5 h to form the acid chloride, then cooled and concentrated under reduced pressure. Toluene was added, and the mixture was concentrated again. The crude acid chloride was dissolved in toluene and treated with triethylamine (3.76 mmol, 0.524 mL) and ethyl 3-(dimethylamino)acrylate (4.89 mmol, 0.700 g). The reaction mixture was heated to 90° C. for 1.5 h. The reaction mixture was filtered and the resulting solution was purified using flash column chromatography (silica, 2.5:1 hexanes/ethyl acetate) to give the desired product in 47% yield. (1.79 mmol, 0.7 g)
MS(ES): 391.9 (M+1) for C14H15FINO3.
1H NMR (300 MHz) DMSO-d6 δ: 0.95 (t, J=7.14 Hz, 3H), 2.89 (br s, 3H), 3.33 (br s, 3H), 4.0(q, J=7.08 Hz, 2H), 6.80 (t, J=1.17 Hz, 1H), 7.64-7.69(m, 1H), 7.79 (m, 1H), 7.87 (br s, 1H).
A suspension of (Z)-ethyl 3-(dimethylamino)-2-(2-fluoro-5-iodobenzoyl)acrylate Intermediate 132 (1.79 mmol, 0.7 g) in ethanol (3 mL) at room temperature was treated with 2-methoxyethylamine (2.26 mmol, 0.17 mL). The reaction mixture was stirred until a yellow solution resulted and concentrated under reduced pressure after 1 h. Potassium carbonate (2.69 mmol, 0.372 g) and DMF (2 mL) were added. The reaction mixture was heated to 70° C. for 3 h, then cooled to room temperature and allowed to stand overnight. The reaction mixture was poured into water. The solid that formed was collected by filtration, washed with water and dried under vacuum for 4 h to give desired product in 80% yield (1.44 mmol, 0.580 g).
MS(ES): 402 (M+1) for C15H16INO4.
1H NMR (400 MHz) DMSO-d6 δ: 1.27 (t, J=7.08 Hz, 3H), 3.32 (s, 3H), 3.64 (t, J=4.84 Hz, 2H), 4.22 (q, J=7.08 Hz, 2H), 4.54 (t, J=4.92 Hz, 2H), 7.68 (d, J=9.00 Hz, 1H), 8.05 (dd, J=8.94, 2.16 Hz, 1H), 8.49 (d, J=2.16 Hz, 1H), 8.59 (s, 1H).
Ethyl 6-iodo-1-(2-methoxyethyl)-4-oxo-1,4-dihydroquinoline-3-carboxylate (Intermediate 133, 400 mg, 1.00 mmol) was suspended in dioxane (4 mL) and degassed with nitrogen for 10 minutes at which time bis(pinacolato)diboron (506 mg, 1.99 mmol), 1,1′-bis(diphenylphosphino)ferrocene-palladium dichloride (41.0 mg, 0.05 mmol), and potassium acetate (294 mg, 2.99 mmol) were added. After the reaction was heated at 90° C. overnight, LC/MS showed completion of the reaction. The reaction was then cooled to room temperature, diluted with DCM and filtered through a pad of diatomaceous earth. The filtrate was concentrated at reduced pressure and quickly purified by silica gel chromatography with 8% MeOH in DCM to yield the title compound.
MS(ES): 402 (M+1) for C21H28BNO6
1H NMR (300 MHz, DMSO-D6) δ ppm 1.20-1.45 (m, 15H) 3.17-3.27 (s, 3H) 3.67 (t, J=4.71 Hz, 2H) 4.24 (q, J=6.97 Hz, 2H) 4.57 (t, J=4.71 Hz, 2H) 7.75-7.91 (m, 1H) 7.90-8.04 (m, 1H) 8.49-8.74 (m, 2H).
The following intermediate was prepared using the general method described above for Intermediate 134 using bis(pinacolato)diboron, 1,1′-bis(diphenylphosphino)ferrocene-palladium dichloride, potassium acetate and the starting material (SM) indicated.
Methyl 6-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)quinoline-3-carboxylate
1H NMR (300 MHz, DMSO-D6) δ ppm 1.34 (s, 12H) 3.95 (s, 3H) 8.08 (s, 2H) 8.58 (s, 1H) 9.10 (d, J = 1.88 Hz, 1H) 9.35 (d, J = 2.07 Hz, 1H)
To a stirred solution of 2,4-dichloro-5-bromopyrimidine (22 mmol, 5 g) in dioxane (100 mL), at room temperature under nitrogen atmosphere, was added morpholine (29.2 mmol, 2.54 g). The reaction mixture was stirred overnight at room temperature, diluted with ethyl acetate (50 mL) and the resulting white solid formed was removed by filtration. The filtrate was concentrated and the resulting residue was purified by column chromatography (using 60-120 mesh silica gel and 4% of ethyl acetate in petroleum ether) to yield the title compound. (4.7 g).
MS(ES): 278 (M) and 280 (M+2) for C8H9BrClN3O.
1H-NMR (300 MHz, CDCl3): δ 3.79 (s, 8H), 8.27 (s, 1H).
A suspension of Intermediate 136 (3.5 mmol, 1 g), 5-(4,4,5,5-Tetramethyl-[1,3,2]dioxaborolan-2-yl)-nicotinic acid ethyl ester (3.6 mmol, 1.01 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (10 mol %, 0.35 mmol, 285 mg) and sodium carbonate (3.5 mmol, 370 mg) in acetonitrile/water (20 mL:5 mL) was degassed and heated to 90° C. for 20 min under an inert atmosphere. The solvent was removed in vacuo and the crude mixture was taken in CHCl3 (30 mL). It was then washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude material was purified by silica gel column chromatography, using Hexane:Ethyl Acetate (3:1) as eluent to get Intermediate 137 (0.69 g).
MS (ES) : 349 (M+1) for C16H17ClN4O3.
1H-NMR (300 MHz, DMSO-d6): δ 0.81 (t, J=6.54 Hz, 3H), 3.24-3.25 (m, 4H), 3.49-3.50 (m, 4H), 4.37 (q, J=7.05 Hz, 2H), 8.20 (s, 1H), 8.37 (s, 1H), 8.91 (d, J=1.98 Hz, 1H), 9.07 (d, J=1.80 Hz, 1H).
5-Bromo-2-chloro-4-(methylthio)pyrimidine (8.3 mmol, 2 g) was suspended in n-BuOH (20 mL) and treated with 3,5-difluoroaniline (9.1 mmol, 1.18 g), HCl in dioxane (4 mL) was added under nitrogen atmosphere and the mixture was refluxed at 100° C. for 3 h. The reaction was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to afford Intermediate 138.
MS(ES): 333.8 (M+2) for C11H8BrF2N3S.
1H-NMR (400 MHz, DMSO-d6): δ 2.58 (s, 3H), 6.78 (tt, J=2.32, 9.27 Hz, 1H), 7.50 (dd, J=2.20, 10.36 Hz, 2H), 8.40 (s, 1H), 10.19 (s, 1H).
Intermediate 138 (3 mmol, 1 g) was suspended in acetone (10 mL), cooled to 0° C. and 3-chloroperoxybenzoic acid (15 mmol, 2.59 g) was added portion wise. The suspension became a clear solution after stirring at 0° C. for 30 min The reaction mixture was then allowed to warm up slowly to room temperature and stirred for 5 h. The reaction mixture pH was raised to 8 with the addition of aq. NaHCO3 solution (50 mL), extracted with ethyl acetate (3×10 mL), combined extracts were washed with brine, dried over Na2SO4, filtered and concentrated to get crude Intermediate 139 (1 g).
MS(ES): 363.9 (M) and 365 (M+1) for C11H8BrF2N3O2S.
1H-NMR (300 MHz, DMSO-d6): δ 3.54 (s, 3H), 6.86 (t, J=9.24 Hz, 1H), 7.44 (d, J=8.82 Hz, 2H), 8.99 (s, 1H), 10.72 (s, 1H).
Intermediate 139 (2.7 mmol, 1 g) was suspended in NMP (10 mL), treated with N,N-diisopropylethylamine (3.4 mmol, 0.56 mL), morpholine (30 mmol, 263 mg) in a sealed tube. The reaction was heated at 90° C. for 30 min then cooled to room temperature, added to water and stirred for 15 min. The precipitate was filtered and dried to afford Intermediate 140.
MS(ES): 371 (M) and 373 (M+2) for C14H13BrF2N4O.
1H-NMR (300 MHz, DMSO-d6): δ 3.59 (d, J=3.93 Hz, 4H), 3.72 (s, 4H), 6.72 (t, J=9.36 Hz, 1H), 7.45 (d, J=10.32 Hz, 2H), 8.30 (s, 1H), 9.91 (s, 1H).
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (17.9 mmol, 4 g) and 3,5-dimethylaniline (18.8 mmol, 2.2 g) in acetonitrile (50 mL), 4 M HCl in 1,4-dioxane (5 mL) was added drop wise. The resulting solution was refluxed at 100° C. with constant stirring. The solvent was removed in vacuo and basified with 10% NaHCO3 solution, extracted with EtOAc (2×150 mL). The combined organic layer was washed with water and brine, dried over sodium sulfate and concentrated under vacuo to yield Intermediate 141 as a white solid (9.7 mmol, 3 g, 54%).
MS(ES): 310 (M+2) for C13H14BrN3O.
1H-NMR (400 MHz, DMSO-d6): δ 2.23 (s, 6H), 3.99 (d, J=1.84 Hz, 3H), 6.62 (s, 1H), 7.34 (s, 2H), 8.35 (d, J=2.0 Hz, 1H), 9.63 (s, 1H).
A mixture of Intermediate 141 (9.7 mmol, 3 g) and aq. sodium thiomethoxide (38.9 mmol, 18 mL, 21% w/v,) and DMF (75 mL) was heated at 60° C. for 2 h; cooled to room temperature, poured into water (150 mL) and acidified with 1.5 N HCl solution. The precipitated solid was filtered to yield Intermediate 142 as off-white solid (2.5 g).
MS(ES): 294 (M) and 296 (M+2) for C12H12BrN3O.
1H-NMR (400 MHz, DMSO-d6): δ 2.23 (s, 6H), 6.69 (s, 1H), 7.14 (s, 2H), 8.04 (s, 1H), 8.79 (br s, 1H), 11.33 (br s, 1H).
A solution of Intermediate 142 (8.4 mmol, 2.5 g) in phosphorus oxychloride (13 mL) was heated to reflux for 45 min, cooled to RT, poured carefully onto a mixture of ice (100 mL) and saturated aq. NaHCO3 solution (20 mL) with constant stirring. It was further extracted with ethyl acetate (2×150 mL). The combined organic layer was washed with water and brine, dried over sodium sulfate and concentrated under vacuo to yield Intermediate 143 (1.7 g).
MS(ES): 312 (M) and 314 (M+2) for C12H11BrClN3.
1H-NMR (400 MHz, DMSO-d6): δ 2.23 (s, 6H), 6.67 (s, 1H), 7.27 (s, 2H), 8.66 (s, 1H), 10.05 (s, 1H).
A mixture of Intermediate 143 (5.4 mmol, 1.7 g) and morpholine (10.8 mmol, 0.94 g) in dioxane (40 mL) was stirred at room temperature for 18 h. Then the reaction mixture was concentrated under vacuo to yield white solid. The solid was dissolved in ethyl acetate (150 mL) and washed with water, brine and dried over sodium sulfate. The solvent was concentrated under vacuo to yield Intermediate 144 as a white solid (1.5 g).
MS(ES): 365 (M+2) for C16H19BrN4O.
1H-NMR (400 MHz, DMSO-d6): δ 2.21 (s, 6H), 3.57-3.59 (m, 4H), 3.72-3.73 (m, 4H), 6.57 (s, 1H), 7.32 (s, 2H), 8.21 (d, J=1.2 Hz, 1H), 9.35 (s, 1H).
A suspension of 4-(5-Bromo-2-chloro-pyrimidin-4-yl)-morpholine Intermediate 136 (3.5 mmol, 1 g), ethyl boronocinnamate (3.95 mmol, 0.87 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.35 mmol, 285 mg) and sodium carbonate (3.5 mmol, 370 mg) in acetonitrile/water (20 mL:5 mL) was degassed and heated to 90° C. for 15-20 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture was taken in CHCl3 (30 mL). It was then washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude material was purified by 60-120 mesh silica gel column chromatography using Hexane:Ethylacetate (91:9) to get 3-[3-(2-Chloro-4-morpholin-4-yl-pyrimidin-5-yl)-phenyl]-acrylic acid ethyl ester Intermediate 145 (0.63 g). MS (ES): 374 (M+1) for C19H20ClN3O3.
1H-NMR (300 MHz, DMSO-d6): δ 1.25 (t, J=7.05 Hz, 3H), 3.25-3.32 (m, 4H), 3.49-3.50 (m, 4H), 4.19 (q, J=7.05 Hz, 2H), 6.74 (d, J=16.05 Hz, 1H), 7.50-7.59 (m, 2H), 7.69 (d, J=16.14 Hz, 1H), 7.73 (br s, 1H), 7.83 (s, 1H), 8.11 (s, 1H).
5-Bromo-2[N-(3-chloro-4-fluorophenyl)]-4-(methylsulfonyl)pyrimidin-2-amine Intermediate 69 (15.7 mmol, 6 g) was suspended in NMP (30 mL) and treated with N,N-diisopropylethylamine (23.6 mmol, 4 mL) and morpholine (18.9 mmol, 1.64 g) in a 100 mL round-bottomed flask. The reaction was refluxed at 90° C. for 45 min. The reaction mixture was added to water and stirred for 15 min The precipitated solid was filtered and washed successively with water, diethyl ether and hexanes and dried to afford 4.96 g of Intermediate 146 (12.56 mmol, 80%). MS(ES): 387 (M) and 389 (M+2) for C14H13BrClFN4O.
1H NMR 400 MHz DMSO-d6: δ 3.57-3.59 (m, 4H), 3.71-3.73 (m, 4H), 7.32 (t, J=9.08 Hz, 1H), 7.55 (ddd, J=9.00, 4.18, 2.68 Hz, 1H), 8.04 (dd, J=6.86, 2.64 Hz, 1H), 8.26 (d, J=1.20 Hz, 1H), 9.71 (s, 1H).
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (8.96 mmol, 2 g) and (4-fluoro-3-nitrophenyl)amine (9.41 mmol, 1.47 g) in butanol (40 mL), 4 M HCl in 1,4-dioxane (2.5 mL) was added dropwise. The resulting solution was refluxed at 100° C. with constant stirring. The solvent was removed in vacuo and basified with 10% NaHCO3 solution. It was further extracted with EtOAc (2×100 mL). The combined organic layer was washed with water and brine, dried over sodium sulfate and concentrated under vacuum to yield 5-bromo-N-(4-fluoro-3-nitrophenyl)-4-methoxypyrimidin-2-amine Intermediate 147 as a white solid (2 g).
MS(ES): 343 (M) and 345 (M+2) for C11H8BrFN4O3.
1H-NMR (400 MHz, DMSO-d6: δ 4.04 (s, 3H), 7.53 (dd, J=9.28, 11.02 Hz, 1H), 7.92-7.96 (m, 1H), 8.45 (s, 1H), 8.79 (dd, J=2.56, 6.76 Hz, 1H), 10.24 (br s, 1H).
A mixture of 5-bromo-N-(4-fluoro-3-nitrophenyl)-4-methoxypyrimidin-2-amine Intermediate 147 (5.82 mmol, 2 g) and HBr in AcOH (12 mL) and aq. HBr (6 mL) was heated at 100° C. for 3 h; The reaction mixture was cooled to RT, extracted with ethyl acetate (2×100mL), washed with brine, dried over Na2SO4 and concentrated to yield 1.3 g of 5-bromo-2-[(4-fluoro-3-nitrophenyl)amino]pyrimidin-4-ol Intermediate 148 as an off-white solid.
MS(ES): 329 (M) and 331 (M+2) for C10H6BrFN4O3.
1H-NMR (400 MHz, DMSO-d6): δ 7.55 (dd, J=9.16, 11.04 Hz, 1H), 7.87-7.89 (m, 1H), 8.12 (s, 1H), 8.47 (dd, J=2.80, 6.74 Hz, 1H), 9.39 (br s, 1H), 11.8 (br s, 1H).
A solution of 5-bromo-2-[(4-fluoro-3-nitrophenyl)amino]pyrimidin-4-ol Intermediate 148 (3.95 mmol, 1.3 g) in phosphorus oxychloride (6 mL) was heated to reflux for 45 minutes, cooled to RT, poured carefully onto a mixture of ice (100 mL) and sat. NaHCO3 (20 mL) with constant stirring. It was further extracted with EtOAc (2×150 mL). The combined organic layers were washed with water and brine, dried over sodium sulfate and concentrated under vacuum to yield 5-bromo-4-chloro-N-(4-fluoro-3-nitrophenyl)pyrimidin-2-amine Intermediate 149 (1 g).
MS(ES): 347 (M) and 349 (M+2) for C10H5BrClFN4O2.
1H-NMR (300 MHz, DMSO-d6): δ 7.57 (dd, J=9.24, 11.05 Hz, 1H), 7.93-7.98 (m, 1H), 8.57 (dd, J=2.73, 6.73 Hz, 1H), 8.77 (s, 1H), 10.63 (br s, 1H).
A mixture of 5-bromo-4-chloro-N-(4-fluoro-3-nitrophenyl)pyrimidin-2-amine Intermediate 149 (2.88 mmol, 1 g) and morpholine (3.45 mmol, 0.3 g) was stirred at room temperature for 18 h. Then the reaction mixture was concentrated under vacuum to yield white solid. The solid was dissolved in EtOAc (100 mL) and washed with water, brine and dried over sodium sulfate. The solvent was concentrated under vacuum to yield 5-bromo-N-(4-fluoro-3-nitrophenyl)-4-morpholin-4-ylpyrimidin-2-amine Intermediate 150 as a white solid (1 g).
MS(ES): 398 (M) and 400 (M+2) for C14H13BrFN5O3.
400 MHz, DMSO-d6: δ 3.62-3.63 (m, 4H), 3.71-3.72 (m, 4H), 7.50 (t, J=10.24 Hz, 1H), 7.83-7.86 (m, 1H), 8.30 (s, 1H), 8.81 (d, J=6.24 Hz, 1H), 10.04 (s, 1H).
To a stirred solution of 2,4-dichloro-5-bromopyrimidine (22 mmol, 5 g) in dioxane (50 mL), at room temperature under nitrogen atmosphere was added morpholine (29.2 mmol, 2.54 g). Further dilution with dioxane (50 mL) became necessary as the reaction progressed. The reaction mixture was stirred overnight at room temperature, then diluted with ethyl acetate (50 mL) and white solid formed was removed by filtration. The filtrate was concentrated and the resulting residue was purified by column chromatography (using 60-120 mesh silica gel and 4% of ethylacetate in petroleum ether) to give 4-(5-Bromo-2-chloro-pyrimidin-4-yl)-morpholine Intermediate 151 (4.7 g).
MS (ES): 278 (M) and 280 (M+2) for C8H9BrClN3O.
1H-NMR (300 MHz, CDCl3): δ 3.79 (s, 8H), 8.27 (s, 1H).
A suspension of 4-(5-Bromo-2-chloro-pyrimidin-4-yl)-morpholine Intermediate 151 (3.5 mmol, 1 g), 5-(4,4,5,5-Tetramethyl-[1,3,2]dioxaborolan-2-yl)-nicotinic acid ethyl ester (3.6 mmol, 1.01 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (10 mol %, 0.35 mmol, 0.285 g) and sodium carbonate (3.5 mmol, 0.370 g) were taken in acetonitrile/water (20 mL:5 mL), degassed and heated to 90° C. for 15-20 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture was taken in CHCl3 (30 mL). It was then washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude material was purified by silica gel column chromatography. The product eluted with Hexane: Ethyl Acetate (3:1) eluent mixture. The title compound Intermediate 152 was obtained (0.69 g). MS (ES) : 349 (M+1) for C16H17ClN4O3.
1H-NMR (300 MHz, DMSO-d6): δ 0.81 (t, J=6.54 Hz, 3H), 3.24-3.25 (m, 4H), 3.49-3.50 (m, 4H), 4.37 (q, J=7.05 Hz, 2H), 8.20 (s, 1H), 8.37 (s, 1H), 8.91 (d, J=1.98 Hz, 1H), 9.07 (d, J=1.80 Hz, 1H).
A suspension of 4-(5-Bromo-2-chloro-pyrimidin-4-yl)-morpholine Intermediate 151_(3.5 mmol, 1 g), ethyl boronocinnamate (3.95 mmol, 0.87 g), [1,1′-bis(diphenyl-phosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (10 mol %, 0.35 mmol, 0.285 g) and sodium carbonate (3.5 mmol, 0.370 g) in acetonitrile/water (20 mL:5 mL) was degassed and heated to 90° C. for 15-20 min under inert atmosphere. Completion of the reaction was monitored by TLC. The solvent was removed in vacuo and the crude mixture was taken in CHCl3 (30 mL). It was then washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude material was purified by silica gel column chromatography. The product eluted with Hexane:Ethyl Acetate (91:9) eluent mixture. The title compound Intermediate 153 was obtained (0.63 g).
MS (ES) : 374 (M+1) for C19H20ClN3O3.
1H-NMR (300 MHz, DMSO-d6): δ 1.25 (t, J=7.05 Hz, 3H), 3.25-3.32 (m, 4H), 3.49-3.50 (m, 4H), 4.19 (q, J=7.05 Hz, 2H), 6.74 (d, J=16.05 Hz, 1H), 7.50-7.59 (m, 2H), 7.69 (d, J=16.14 Hz, 1H), 7.73 (br s, 1H), 7.83 (s, 1H), 8.11 (s, 1H).
To a solution of 6-bromo-4-oxo-4H-chromene-3-carboxylic acid (3.7 mmol, 1 g) in methanol (15 mL) was added thionyl chloride (5 mL) slowly at 0° C. The reaction mixture was then refluxed at 70° C. for 2 h and then cooled to room temperature. Methanol was removed in vacuo and the residue was poured on to ice water (25 mL), extracted with ethyl acetate (2×10 mL). The combined organic extracts were washed with 10% sodium bicarbonate solution (2×10 mL), brine, dried over anhydrous sodium sulphate, filtered and concentrated to get methyl 6-bromo-4-oxo-4H-chromene-3-carboxylate Intermediate 154 as yellow solid (900 mg).
MS(ES): 283 (M) and 285.2 (M+2) for C11H7BrO4.
1H-NMR(400 MHz, DMSO-d6): δ 3.80 (s, 3H), 7.74 (d, J=8.80 Hz, 1H), 8.03 (dd, J=2.80, 9.00 Hz, 1H), 8.16 (d, J=2.40 Hz, 1H), 9.01 (s, 1H).
A mixture of methyl 6-bromo-4-oxo-4H-chromene-3-carboxylate Intermediate 154 (1.41 mmol, 400 mg), bis(pinacolato)diboron (3.94 mmol, 1 g), 2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (20 mol %, 0.28 mmol, 135 mg), palladium acetate (4 mol %, 0.06 mmol, 16 mg) and triethylamine (5.6 mmol, 570 mg) in dioxane (20 mL) was degassed and then refluxed at 100° C. for 20 min under nitrogen atmosphere. The solvent was removed in vacuo, residue diluted with dichloromethane (20 mL), washed with water (2×20 mL), brine. The organic layer was dried over anhydrous sodium sulphate, filtered and concentrated and the resulting residue was then recrystallized with dichloromethane-hexane to get 300 mg of a mixture of methyl 4-oxo-6-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-4H-chromene-3-carboxylate and [3-(methoxycarbonyl)-4-oxo-4H-chromen-6-yl]boronic acid, Intermediate 155.
MS(ES): 249.2 (M+1) for C11H9BO6. LC=58.64% of boronic acid and 331.2 (M+1) for C17H19BO6 LC=36.05% for pinacol boronate.
A suspension of sultone Intermediate 69 (mmol, 3 g), methoxypyrimidineboronic acid (8.6 mmol, 1.38 g), dichlorobis(triphenyl-phosphine)palladium(II) (0.6 mmol, 437 mg) and sodium carbonate (7.8 mmol, 826 mg) in dioxane (20 mL)-water (5 mL) was degassed and refluxed at 100° C. for 15-20 minutes. Dioxane was removed under vacuum and the residue taken in chloroform (50 mL), washed with water (50 mL) and brine. The layers were separated and the organic layer was dried over sodium sulphate, filtered and concentrated.
The resulting residue was then purified by column chromatography using 230-400 mesh silica gel and 2% of methanol in chloroform as eluent. The solid thus obtained was stirred with acetonitrile for 15 minutes. The solid was filtered and dried under vacuum to yield the title compound as solid (1.4 g). MS(ES): 410.2 (M+1) for C16H13ClFN5O3S.
1H-NMR(300 MHz, DMSO-d6): δ 3.39 (s, 3H), 3.96 (s, 3H), 7.43 (t, J=9.09 Hz, 1H), 7.60-7.65 (m, 1H), 8.00 (dd, J=2.40, 6.61 Hz, 1H), 8.67 (s, 2H), 8.81 (s, 1H), 10.57 (s, 1H).
A mixture of methyl 4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-2-carboxylate (1.1 eq, 0.289 mmol, 0.076 g) and 2,8,9-Triisobutyl-2,5,8,9-tetraaza-1-phosphabicyclo[3.3.3]undecane (0.1 eq, 0.024 mmol, 8.1 mg) was stirred for 20 min under N2 in acetonitrile (3 mL). [Flask I]
In a separate flask, 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(methylsulfonyl)pyrimidin-2-amine, (Intermediate 69) (1 eq, 0.263 mmol, 100 mg) was mixed with [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (10 mol %, 21.5 mg) and stirred for 10 min under N2 in acetonitrile (3 mL). [Flask II]
The contents of [Flask I] were quickly transferred to [Flask II]. Water (1.5 mL) was added and the mixture was heated at 90° C. for 20-25 minutes then concentrated in vacuo. The resulting slurry was taken in EtOAc and washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated.
The reaction was repeated on the same scale using the above procedure. The crude materials from both batches were combined and purified by silica gel column chromatography (60-120 mesh) using ethyl acetate/hexanes (2:3 to 3:2) as an eluent. The title compound was thus obtained (0.09 g). MS(ES): 437 (M+1) for C18H14ClFN4O4S.
400 MHz, DMSO-d6: δ 3.38 (s, 3H), 3.90 (s, 3H), 7.44 (t, J=9.08 Hz, 1H), 7.64 (ddd, J=2.72, 4.10, 9.03 Hz, 1H), 7.75 (dd, J=1.76, 4.94 Hz, 1H), 8.00 (dd, J=2.40, 6.66 Hz, 1H), 8.19 (d, J=1.12 Hz, 1H), 8.78 (d, J=4.96 Hz, 1H), 8.82 (s, 1H), 10.63 (s, 1H).
To a stirred suspension of 5-bromo-N2-(3-chloro-4-fluorophenyl)-N4-(3-methoxypropyl)pyrimidine-2,4-diamine, Intermediate 119 (7.7 mmol, 3 g, 1 eq), zinc acetate (0.306 mmol, 0.056 g, 0.04 eq), zinc (1.9 mmol, 0.124 g, 2.5 eq), tris(dibenzylideneacetone)-dipalladium (0) (0.15 mmol, 0.135 g, 0.02 eq) and 1,1′-bis(diphenylphosphino)ferrocene (0.3 mmol, 0.168 g, 0.04 eq) in degassed DMF (30 mL) was added zinc cyanide (0.580 g, 4.9 mmol). The vessel was evacuated and backfilled with argon; this process was repeated once. The mixture was placed under an atmosphere of nitrogen, stirred, and heated to 100° C. for 3 hours. The stirring was continued while the mixture was allowed to cool to room temperature; the mixture was then diluted with small volumes of water. The dark solution became cloudy with addition of water. Larger volumes were added until a maximum of precipitation was reached. The stirring was continued for ten minutes. The solid was collected and washed with water to give the title compound (2.1 g). MS(ES): 336 (M+1) for C15H15ClFN5O.
300 MHz, DMSO-d6: δ 1.76-1.85 (m, 2H), 3.21 (s, 3H), 3.38 (t, J=6.15 Hz, 2H), 3.41-3.47 (m, 2H), 7.33 (t, J=9.09 Hz, 1H), 7.57-7.62 (m, 1H), 7.87 (br s, 1H), 8.09-8.12 (m, 1H), 8.36 (s, 1H), 9.99 (br s, 1H).
Intermediate 159: 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide
To 2-(3-chloro-4-fluorophenylamino)-4-(3-methoxypropylamino)pyrimidine-5-carbonitrile, Intermediate 158 (6.8 mmol, 2.3 g) in 5 mL DMF, ammonium sulfide, (20% aq solution, 14 mL, 41 mmol) was added and heated at 70° C. in a sealed tube for 4 h. The reaction mixture was quenched with water and the solid was filtered to give the title compound (2 g). MS(ES): 368 (M−1) for C15H17ClFN5OS.
400 MHz, DMSO-d6: δ 1.80-1.87 (m, 2H), 3.32 (s, 3H), 3.43 (t, J=6.12 Hz, 2H), 3.52 (q, J=6.56 Hz, 2H), 7.32 (t, J=9.08 Hz, 1H), 7.59-7.63 (m, 1H), 8.21 (dd, J=2.48, 6.84 Hz, 1H), 8.35 (s, 1H), 9.26 (br s, 1H), 9.37 (br s, 1H), 9.63 (br s, 1H), 9.79 (br s, 1H).
To 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(morpholin-4-yl)pyrimidin-2-amine Intermediate 146, 0.51 mmol, 0.2 g) in dry THF at −78° C. under nitrogen atmosphere, n-BuLi (1.6 M in Hexanes, 1.02 mmol, 0.64 mL) was added dropwise and stirred for 20 min Carbon dioxide gas was passed into the reaction mixture for 10 min with constant stirring. The solvent was evaporated and the residue was dissolved in water followed by washing with ethyl acetate. The aqueous layer was acidified with 1 N HCl and the precipitate formed was filtered and dried to yield 45 mg of 2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4-yl)pyrimidine-5-carboxylic acid.
2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidine-5- carboxylic acid
To a mixture of 2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4-yl)pyrimidine-5-carboxylic acid (Intermediate 160, 0.85 mmol, 0.3 g) and (Benzotriazol-1-yloxy)tris(dimethylamino)phosphonium hexafluorophosphate (1 mmol, 442 mg) in DMF at 0° C., Et3N (2.14 mmol, 216 mg, 0.3 mL) was added and stirred for 5 min 1,2-phenylenediamine (1 mmol, 110 mg) in DMF was added drop wise to the reaction mixture and stirred at RT for 4-5 h. Water was added to the mixture and stirred overnight. The solid thus obtained was filtered and purified by column chromatography using methanol: chloroform (3:97) to yield the title compound (70 mg).
N-(2-aminophenyl)-2-[(3-chloro-4- fluorophenyl)amino]-4-(morpholin-4- yl)pyrimidine-5-carboxamide
To a mixture of 5-methylisoxazole-4-carboxylic acid (3.5 mmol, 500 mg), triethylamine (11.8 mmol, 1.19 g, 1.6 mL) and N,O-Dimethylhydroxylamine hydrochloride (5.1 mmol, 498 mg) in DCM, was added T3P (50% in EtOAc, 3.3 mL, 6 mmol) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 12 h. Reaction mixture was then diluted with dichloromethane (12 mL) and the dichloromethane layer was successively with water (2×50 mL), 10% aq sodium bicarbonate solution (50 mL) and brine. The organic layer was dried over sodium sulphate, filtered and concentrated. The residue was further purified using column chromatography (60-120 mesh; product eluted at 15% ethyl acetate/hexanes) to yield 480 mg of the title compound.
N-methoxy-N,5- dimethylisoxazole- 4-carboxamide
To 480 mg of N-methoxy-N,5-dimethylisoxazole-4-carboxamide (Intermediate 162, 2.8 mmol) taken in dry ether at 0° C., was added drop wise a solution of methyl magnesium bromide (3 M in ether) (2.8 mL, 8.4 mmol, 3 eq). The contents of the flask were then slowly brought to room temperature and stirred for 3 h. The reaction was quenched with saturated ammonium chloride (2×20 mL) and extracted with Et2O. The organic layer was dried over sodium sulphate, filtered and concentrated to yield 200 mg of the title compound.
1-(5- methylisoxazol-4- yl)ethanone
To 340 mg of 1-(5-methylisoxazol-4-yl)ethanone (Intermediate 163, 2 7 mmol) taken in dry THF at room temperature, was added phenyltrimethylammonium tribromide (3 mmol, 1.12 g) and refluxed for 2 h. The reaction was quenched with water (2×20 mL) and extracted with ethyl acetate. The organic layer was dried over sodium sulphate, filtered and concentrated. The resulting residue was purified by silica gel column chromatography (60-120 mesh; product eluted at 15% ethyl acetate/hexanes) to afford 100 mg of the title compound.
2-bromo-1-(5- methylisoxazol-4- yl)ethanone
To a mixture of 1-methyl-1H-imidazole-5-carboxylic acid (7.93 mmol, 1 g), triethylamine (19.83 mmol, 2.77 mL) and N,O-Dimethylhydroxylamine hydrochloride (9.52 mmol, 928 mg) in DCM, was added T3P (50% in EtOAc, 11.89 mol, 7.57 mL) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred overnight. Reaction mixture was then diluted with dichloromethane (12 mL), washed the dichloromethane solution successively with water (2×50 mL), 10% aq sodium bicarbonate solution (50 mL) and brine. The organic layer was dried over sodium sulphate, filtered and concentrated. The residue was further purified using column chromatography (hexane-ethyl acetate as the eluent) to yield the title compound (1.13 g).
N-methoxy-N,1- dimethyl-1H- imidazole-5- carboxamide
To 1.3 g of N-methoxy-N,1-dimethyl-1H-imidazole-5-carboxamide (Intermediate 165, 7.68 mmol) taken in dry ether at 0° C., was added drop wise a solution of methyl magnesium bromide (3 M in ether) (7.69 mL, 23 mmol). The contents of the flask were then slowly brought to room temperature and stirred for 3 h. The reaction was quenched with 1.5 N HCl (2×20 mL) and extracted with Et2O. The organic layer was dried over sodium sulphate, filtered and concentrated to yield 800 mg of the title compound.
1-(1-methyl-1H- imidazol-5- yl)ethanone
1-(1-methyl-1H-imidazol-5-yl)ethanone (2.89 mmol, 0.36 g) was dissolved in 5 mL of 48% hydrogen bromide. To the stirred solution at 25° C. was added over a 5 min period bromine (3.19 mmol, 0.163 mL, 0.51 g) dissolved in 5 mL of 48% hydrogen bromide. The reaction mixture was heated at 70° C. for 2.5 h and then concentrated in vacuo to a dark oil. A mixture of isopropyl alcohol/diethyl ether was added, and trituration of the oil gave a solid. This was collected by filtration and washed with diethyl ether to give 0.28 g of a mixture of 2-bromo-1-(1-methyl-1H-imidazol-5-yl)ethanone and 2,2-dibromo-1-(1 -methyl-1H-imidazol-5-yl)ethanone.
+
2-bromo-1-(1- methyl-1H- imidazol-5- yl)ethanone and 2,2-dibromo-1-(1- methyl-1H- imidazol-5- yl)ethanone
To a mixture of ethyl 3-oxo-3-(pyridin-2-yl)propanoate (0.52 mmol, 100 mg), p-Acetamidobenzene sulfonyl azide (0.52 mmol, 114 mg) in dry acetonitrile (5 mL) was added triethyl amine (1.56 mmol, 157 mg) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 2-3 h. The solvent was removed in vacuo and the resulting residue was stirred with petroleum ether: diethyl ether (1:1) mixture for 0.5 h and filtered. The filtrate was concentrated to yield 100 mg of the title compound as brownish liquid, which was used in the next step without further purification.
MS(ES): 220 (M+1) for C10H9N3O3.
To a suspension of 1-methyl-1H-pyrazole-3-carboxylic acid (0.3 g, 2.38 mmol) in dichloromethane (10 mL) was added oxalyl chloride (0.3 mL, 3.6 mmol) dropwise at 0° C. The resulting mixture was stirred at room temperature for 1 h and then heated to 70° C. for 2 h. After cooling to room temperature, the excess oxalyl chloride and solvent was removed by rotary evaporator (with water bath temperature below 40° C.) to afford the title compound as a gum, which was used in the next step without further purification.
0.53 g of ethyl hydrogen malonate (4.05 mmol) was taken in anhydrous tetrahydrofuran (10 mL) in a 2-necked 100 mL round bottom flask equipped with a nitrogen inlet. After cooling to −78° C., n-butyl lithium (2.7 mL, 8.1 mmol, 3 M solution in hexanes) was added through a syringe while the temperature was allowed to rise to approximately −10° C. The heterogeneous solution was recooled to −75° C. and acid chloride, Intermediate 169, prepared above in anhydrous THF (5 mL) was added over 10-15 minutes. The resulting mixture was stirred for 3 hours and then poured into a 100 mL separatory funnel containing ethyl acetate (50 mL) and ice-cold 1N HCl (5 mL). The layers were separated and the aqueous layer was extracted with ethyl acetate (50 mL×2). The organic layers were combined and washed with saturated aqueous sodium bicarbonate solution (2×50 mL) and brine (50 mL). The solvent was removed under vacuum to afford a purple solid, which was purified by RP-HPLC (Symmetry C18 column(19×300 mm, 7 μm); using a binary solvent mixture of 10 mM NH4OAc (A)/CH3CN (B) (0-20 min 0-40% B, 20-30 min. 40% B and 30-40 min: 40-100% B; flow rate of 15 mL/min; Separation was monitored at 254 nm) to get the title compound as a semi-solid (100 mg).
ethyl 3-(1-methyl- 1H-pyrazol-3-yl)-3- oxopropanoate
To a solution of ethyl 3-(1-methyl-1H-pyrazol-3-yl)-3-oxopropanoate (Intermediate 170, 100 mg, 0.510 mmol) in ethyl acetate (5 mL) was added N-chlorosuccinimide (75 mg, 0.56 mmol, 1.1 equiv) and Amberlyst-15 resin (100 mg). The resulting mixture was stirred for 4 hours at room temperature. The solid was removed by filtration and the solvent was removed in vacuo to afford the title compound (100 mg) which was used for the next step without further purification.
ethyl 2-chloro-3-(1- methyl-1H-pyrazol- 3-yl)-3- oxopropanoate
Isopropyltriphenylphosphonium iodide (1.621 g, 3.75 mmol) was suspended in THF (8 ml) and cooled to −78° C. 2.4 M butyllithium in hexanes (1.563 mL, 3.75 mmol) was added dropwise over 2 minutes. The mixture was then stirred over an ice-water bath 30 min to give a clear dark red solution. The mixture was cooled to −78° C. and a solution of (E)-tert-butyl 3-(3-bromophenyl)acrylate (590 mg, 2.08 mmol) in THF (3 ml) was added. The mixture was cooled over an ice-water bath and allowed to slowly warm to room temperature overnight. Methyl iodide (0.6 mL, 9.60 mmol) was added to the mixture followed by stirring at room temperature 1 hour. The mixture was poured into 0.5M HCl, extracted with EtOAc, dried over MgSO4 and evaporated. The residue was dissolved in dichloromethane and filtered over silica gel, rinsed with 200 ml 5% ethyl acetate in hexane. The filtrate was evaporated to give the crude product as a yellow oil: (550 mg).
1H NMR (400 MHz, CHLOROFORM-D) δ ppm 0.90 (s, 3H), 1.34 (s, 3H), 1.48 (s, 9H), 1.86 (d, 1H), 2.56 (d, 1H), 7.06-7.17 (m, 2H), 7.29-7.35 (m, 2H).
(1,3-trans)-tert-butyl 3-(3-bromophenyl)-2,2-dimethylcyclopropanecarboxylate) Intermediate 173 (1.3 g, 4.00 mmol), 4,4,4′,4′,5,5,5′,5′-octamethyl-2,2′-bi(1,3,2-dioxaborolane (2.030 g, 7.99 mmol), potassium acetate (1.177 g, 11.99 mmol), PdCl2(dppf)-CH2Cl2 Adduct (0.326 g, 0.40 mmol) and dioxane (10 mL) were combined and degassed by bubbling an argon stream through the mixture for 10 minutes. The mixture was warmed over a 90° C. heating block 1 h 15 m. The mixture was allowed to cool, diluted to ˜40 ml with CH2Cl2, filtered and evaporated then applied to a 40 g silica cartridge and eluted with 0 to 10% ethyl acetate/hexanes. The title compound was obtained as a thick clear oil (1.124 g) 1H NMR (400 MHz, CHLOROFORM-D) δ ppm 0.89 (s, 3H), 1.25 (s, 3H), 1.34 (s, 12H), 1.48 (s, 9H), 1.93 (d, 1H), 2.61 (d, 1H), 7.25 (d, 1H), 7.28 (t, 1H), 7.59 (s, 1H), 7.64 (d, 1H)
The intermediates in the table below were prepared using the procedure described above and the specified starting material.
1H NMR
methyl 2-methoxy-5- (4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl) nicotinate
Intermediate 176: (1,3-trans)-tert-butyl 3-(3-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)phenyl)-2,2-dimethylcyclopropanecarboxylate
(1S,3S)-tert-butyl 2,2-dimethyl-3-(3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)cyclopropanecarboxylate Intermediate 174 (300 mg, 0.81 mmol), 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine [Intermediate 115] (200 mg, 0.46 mmol), Tris(dibenzylideneacetone)dipalladium(0) (41.9 mg, 0.05 mmol), 2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (65.5 mg, 0.14 mmol), Na2CO3 (72.8 mg, 0.69 mmol), acetonitrile (3 mL) and water (0.750 mL) were combined and degassed with an argon stream for 10 min. The mixture was warmed at 80° C. 1 h 15 m, allowed to cool, diluted with acetonitrile, filtered and adsorbed on 15 ml silica gel. Flash chromatography (40 g cartridge) 20 to 100% dichloromethane/hexane gave the pure title compound (35 mg). MS: ES+602 for C30H28ClF4N5O2.
1H NMR (400 MHz, CHLOROFORM-D) δ ppm 0.86 (s, 3H), 1.32 (s, 3H), 1.46 (s, 9H), 1.79 (d, 1H), 2.57 (d, 1H), 6.56 (s, 1H), 6.92 (s, 1H), 7.00 (d, 1H), 7.09-7.21 (m, 2H), 7.25-7.32 (m, 2H), 7.35-7.41 (m, 1H), 7.85-7.95 (m, 2H), 8.52 (s, 1H).
tert-Butyl 2-(diethoxyphosphoryl)acetate (2.291 mL, 9.75 mmol) and tetrahydrofuran (5 mL) were combined and cooled over a dry-ice ethanol bath at −70 C then Sodium bis(trimethylsilyl)amide, 2M solution in THF (4.82 mL, 9.63 mmol) was added dropwise over 5 minutes to give a clear yellow solution. The mixture was stirred over the cold bath 30 minutes, then a solution of 5-bromonicotinaldehyde (1.629 g, 8.76 mmol) in 5 ml THF was added. The cold bath was removed and the mixture was stirred 20 minutes. The mixture was poured into 0.5M HCl and extracted ethyl acetate, washed with saturated sodium chloride, dried over MgSO4 and evaporated to give the title compound as a light yellow solid (2.78 g). 1H NMR (400 MHz, CHLOROFORM-D) δ ppm 1.52 (s, 9H), 6.44 (d, 1H), 7.48 (d, 1H), 7.98 (d, 1H), 8.55-8.73 (m, 2H)
Trimethylsulfoxonium iodide (1.084 g, 4.93 mmol) was combined with dimethylsulfoxide (5 ml) and 60% sodium hydride dispersion in oil (0.183 g, 4.58 mmol) and stirred at room temperature for 50 minutes to give a clear solution, then (E)-tert-butyl 3-(5-bromopyridin-3-yl)acrylate Intermediate 177 (1 g, 3.52 mmol) was added together with dimethylsulfoxide (1 ml) to give a yellow-orange suspension which was stirred at room temperature for 45 minutes. The mixture was poured into 50 ml water, extracted twice with ethyl acetate and the organic layer was dried over magnesium sulfate and evaporated to give a clear oil. Purification by flash chromatography, 0 to 15% ethyl acetate in hexane gave the title compound as a white solid (455 mg). 1H NMR (400 MHz, CHLOROFORM-D) δ ppm 1.20-1.28 (m, 1H), 1.47 (s, 9H), 1.56-1.63 (m, 1H), 1.82-1.90 (m, 1H), 2.38-2.45 (m, 1H),7.51 (s, 1H), 8.35 (d, 1H), 8.50 (d, 1H).
(1,2-trans)-tert-butyl 2-(5-bromopyridin-3-yl)cyclopropanecarboxylate Intermediate 178 (0.435 g, 1.46 mmol), 4,4,4′,4′,5,5,5′,5′-octamethyl-2,2′-bi(1,3,2-dioxaborolane) (0.741 g, 2.92 mmol), potassium acetate (0.430 g, 4.38 mmol), PdCl2(dppf)-dichloromethane adduct (0.119 g, 0.15 mmol) and dioxane (5 mL) were combined and degassed by bubbling and argon stream through the mixture for 10 minutes. The mixture was warmed at 90° for 1.5 hours, allowed to cool and filtered. The solids were rinsed with dichloromethane and the filtrate was evaporated. The residue was filtered over 25 ml silica gel, eluting with dichloromethane (200 ml), then 25% ethyl acetate in dichloromethane (200 ml). The filtrate was discarded before the silica gel was further eluted with 200 ml 5% methanol in dichloromethane. Evaporation gave the title compound as a crude brown solid (270 mg). 1H NMR (400 MHz, CHLOROFORM-D) δ ppm 0.79-0.99 (m, 1H), 1.34 (s, 12H), 1.46 (s, 9H), 1.51-1.59 (m, 1H), 1.83-1.90 (m, 1H), 2.38-2.47 (m, 1H), 7.68 (s, 1H), 8.49 (m, 1H), 8.76 (m, 1H).
(1R,2R)-tert-butyl 2-(5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridin-3-yl)cyclopropanecarboxylate, Intermediate 179 (270 mg, 0.55 mmol), 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine [Intermediate 115] (159 mg, 0.36 mmol), Tris(dibenzylideneacetone) dipalladium(0) (33.4 mg, 0.04 mmol), 2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (52.2 mg, 0.11 mmol), sodium carbonate (58.0 mg, 0.55 mmol), acetonitrile (2 mL) and water (0.500 mL) were combined and degassed with an argon stream for 10 min. The mixture was warmed at 80° C. for 1 hour 15 minutes, allowed to cool, diluted with acetonitrile, filtered and adsorbed on silica gel. Purification by flash chromatography (25 g cartridge) 0.5 to 5% methanol in dichloromethane gave the solid title compound (110 mg). MS: ES+ 575 for C27H23ClF4N6O2.
1H NMR (400 MHz, DMSO-D6) δ ppm 1.21-1.30 (m, 2H), 1.41 (s, 9H), 1.78-1.86 m, 1H), 2.33-2.42 (m, 1H), 7.02 (d, 1H), 7.23 (s,1H), 7.41 (t, 1H), 7.65-7.75 (m, 1H), 8.08 (dd, 1H), 8.21 (d, 1H), 8.45 (d, 2H), 8.81 (s, 1H), 10.42 (s, 1H).
The title compound was prepared using the general method described above for Intermediate 178 using (E)-tert-butyl 3-(3-bromophenyl)acrylate as a starting material. 1H NMR (300 MHz, CHLOROFORM-D) δ ppm 0.76-0.94 (m, 1H), 1.16-1.23 (m, 1H), 1.46 (s, 9H), 1.77-1.86 (m, 1H), 2.33-2.43 (m, 1H), 7.01 (d, 4H), 7.12 (t, 1H), 7.21 (s, 1H), 7.31 (d, 1H).
The title compound was prepared using the general method described above for Intermediate 178 using Intermediate 181 as a starting material. 1H NMR (400 MHz, CHLOROFORM-D) δ ppm 0.80-0.93 (m, 1H), 1.45 (s, 12H), 1.45 (s, 9H), 1.47-1.53 (m, 1H), 1.79-1.89 (m, 1H), 2.40-2.50 (m, 1H), 7.17 (d, 1H), 7.28 (d, 1H), 7.52 (s, 1H), 7.63 (d, 1H).
The title compound was prepared using the general method described above for Intermediate 178 using Intermediate 182 and Intermediate 115 as starting materials. MS: ES+ 574 for C27H23ClF4N6O2.
1H NMR (400 MHz, DMSO-D6) δ ppm 1.17-1.22 (m, 1H), 1.30-1.37 (m, 1H), 1.40 (s, 9H), 1.68-1.76 (m, 1H), 2.23-2.33 (m, 1H), 6.79 (s,1H), 6.96 (d, 1H), 7.00 (d, 1H), 7.13-7.18 (m, 1H), 7.24 (t, 1H), 7.39 (t, 1H), 7.65-7.73 (m, 1H), 8.12 (dd, 1H), 8.25 (s, 1H), 8.79 (s, 1H), 10.38 (s, 1H).
Methyl 5-bromo-2-chloronicotinate (1 g, 3.99 mmol) and methylamine, 2M solution in THF (4 ml, 8.00 mmol) were combined and warmed in a microwave reactor at 125° C. for 1 hour. The mixture was combined with 50 ml ethyl acetate, washed with 0.2M HCl, dried over magnesium sulfate and evaporated to give the title compound as an off-white solid (0.956 g).
1H NMR (300 MHz, DMSO-d6) δ ppm 2.93 (d, 3H), 3.82 (s, 3H), 7.87 (br. s., 1H), 8.12 (d, 1H), 8.39 (d, 1H)
The title compound was prepared using the general method described above for Intermediate 184 using dimethylamine, 2M solution in THF as a reagent. 1H NMR (300 MHz, DMSO-d6) d ppm 2.92 (s, 6H), 3.82 (s, 3H), 7.97 (d, 1H), 8.30 (d, 1H)
4H-1,2,4-triazole (0.4 g, 5.79 mmol) was dissolved in NMP (5 mL) then sodium hydride (60% dispesion in oil) (200 mg, 5.00 mmol) was added. The mixture was stirred at room temperature for 30 minutes, then methyl 5-bromo-2-chloronicotinate (1 g, 3.99 mmol) was added. The mixture was stirred for 2 hours, diluted with water, extracted with ethyl acetate, washed with saturated sodium chloride, dried over magnesium sulfate and evaporated. Purification of the residue by flash chromatography (25 g cartridge, 20 to 60% ethyl acetae/hexanes) gave the title compound as an off-white solid (0.42 g).
MS: ES+ 284 for C9H7BrN4O2.
1H NMR (400 MHz, DMSO-d6) δ ppm 3.76 (s, 3H), 8.29 (s, 1H), 8.56 (d, 1H), 8.89 (d, 1H), 9.29 (s, 1H).
The title compound was prepared using the general method described above for Intermediate 186 using 1H-pyrazole as a reagent.
MS: ES+ 283 for C10H8BrN3O2.
1H NMR (400 MHz, DMSO-d6) δ ppm 3.75 (s, 3H), 6.53-6.64 (m, 1H), 7.81 (d, 1H), 8.41 (d, 1H), 8.51 (d, 1H), 8.76 (d, 1H).
Methyl 5-bromo-2-chloronicotinate (800 mg, 3.19 mmol), 2-(methylsulfonyl)ethanamine hydrochloride (586 mg, 3.67 mmol), NMP (4 mL) and N,N-diisopropylethylamine (0.893 mL, 5.11 mmol) were combined and warmed over at 80° for 18 h, diluted with water (50 ml) to give a solid precipitate which was collected and rinsed with water, then 1:1 ether/hexanes to give the title compound as a beige solid (0.687 g).
MS: ES+ 338 for C10H13BrN2O4S.
1H NMR (400 MHz, DMSO-d6) δ ppm 3.02 (s, 3H), 3.40 (t, 2H), 3.83 (s, 3H), 3.90 (q, 2H), 8.18 (d, 1H), 8.16 (t, 1H), 8.42 (d, 1H)
Methyl 5-bromo-2-chloronicotinate (1 g, 4 mmol) and imidazole (820 mg, 12 mmol) combined with NMP (5 mL) and warmed at 70° C. for 17 hours, then at 100° C. for 5 hours. The mixture was diluted with water, extracted with ethyl acetate, washed with saturated sodium chloride, dried over magnesium sulfate and evaporated. The residue was purified by flash chromatography (25 g cartridge, 10 to 40% acetonitrile in dichloromethane) to give the title compounds as an off-white solid: 236 mg.
MS: ES+ 283 for C10H8BrN3O2.
1H NMR (400 MHz, DMSO-d6) δ ppm 3.78 (s, 3H), 7.07 (s, 1H), 7.50 (s, 1H), 8.03 (s, 1H), 8.58 (d, 1H), 8.90 (d, 1H)
Methyl 5-bromo-6-oxo-1,6-dihydropyridine-3-carboxylate (2 g, 8.62 mmol) was combined with DMF (20 mL) and triethylamine (3.60 mL, 25.86 mmol) to give a clear solution which was cooled over an ice-water bath. Dimethylsulfate (2.452 mL, 25.86 mmol) was added to the cold solution dropwise over several minutes. The clear solution was removed from the cold bath and stirred at room temperature for 1.5 hours to give a suspension. The mixture was diluted with 0.2M NaOH to 200 ml and the solids were filtered and rinsed with water to give the title compound as a white solid (0.84 g).
1H NMR (400 MHz, CHLOROFORM-d) δ ppm 3.68 (s, 3H), 3.88 (s, 3H), 8.19 (d, 1H), 8.27 (d, 1H).
A suspension of 1,3-dibromobenzene (1 eq), amino acid (2-2.5 eq), CuI (20 mol %) and potassium carbonate (3 eq) in DMF (5 mL) was taken in sealed tube, degassed and heated to 90° C. overnight under inert atmosphere. The reaction mixture was then cooled to RT and filtered through a celite bed. The filtrate was acidified with 1.5 N HCl. The solvent was removed under vacuum and the crude mixture taken in CHCl3 (50 mL), washed with water and brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform: methanol (9:1) as an eluent to give the product.
N-(3-bromophenyl)-N- methylglycine
1-(3-bromophenyl)-L- proline
1-(3-bromophenyl)-D- proline
1-(3- bromophenyl(piperidine- 3-carboxylic acid
1-(3- bromophenyl)piperidine- 2-carboxylic acid
To a suspension of amino acid derivative (1.5 eq) taken in excess of MeOH at 0° C., was added thionyl chloride (1 vol) slowly and the reaction mixture refluxed for 2 h. The solvent was removed under vacuum and the crude mixture was taken in EtOAc (30 mL), washed with aq. NaHCO3 solution, water and brine, dried over Na2SO4, filtered and concentrated. The crude material was taken to the next step as such without further purification.
methyl N-(3- bromophenyl)-N- methylglycinate
methyl 1-(3- bromophenyl)-L- prolinate
methyl 1-(3- bromophenyl)-D- prolinate
methyl 1-(3- bromophenyl) piperidine-3- carboxylate
methyl 1-(3- bromophenyl) piperidine-2- carboxylate
A suspension of aryl bromide (1 eq), bis(pinacolato)diboron (2 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (20 mol %) and potassium acetate (3 eq) was taken in dioxane and it was degassed for 10 min. Then the reaction mixture was heated overnight at 90° C. The reaction mixture was cooled to room temperature, filtered through a celite bed, washed with ethyl acetate twice and concentrated in vacuo. The residue was diluted with ethyl acetate (2×), washed with water (1×) and brine (1×), dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by 60-120 silica gel column chromatography using ethyl acetate/hexanes and as eluent to give the product.
A suspension of aryl bromide (1 eq), bis(pinacolato)diboron (3 eq), palladium(II) acetate (20-40 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (20 mol %) and triethylamine (3 eq) was taken in dioxane and it was degassed for 10 min. Then the reaction mixture was heated overnight at 90-100° C. The reaction mixture was cooled to room temperature, diluted with water and extracted with ethyl acetate (2×). The organic layer was washed with water (1×) and brine (1×), dried over Na2SO4 and concentrated in vacuo. Then the crude mass was purified by 60-120 silica gel column chromatography using ethyl acetate/hexanes and as eluent to give the product.
methyl N-methyl-N-[3- (4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2- yl)phenyl]glycinate
methyl 1-[3-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)phenyl]-L-prolinate
methyl 1-[3-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)phenyl]-D-prolinate
methyl 1-[3-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)phenyl]piperidine-3- carboxylate
methyl 1-[3-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)phenyl]piperidine-2- carboxylate
a)Method I;
b)Method II
To a suspension of 3-bromoaniline (5.8 mmol, 1 g), and bromoacetic acid (8.7 mmol, 1.2 g) in ethanol (50 mL), was added triethylamine (17.3 mmol, 1.75 g) and 4-(Dimethylamino)pyridine (1.7 mmol, 0.2 g). The mixture was refluxed for 2 days. The reaction mixture was concentrated in vacuo, acidified with 1.5 N HCl and extracted with ethyl acetate (50 mL).The organic layer was washed with brine solution (25 mL), dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by 60-120 silica gel column chromatography using chloroform and methanol (2%) as eluent to give the title compound (0.5 g). Taken for next step on basis of LCMS.
N-(3-bromophenyl) glycine
A suspension of N-(3-bromophenyl)glycine Intermediate 206 (3.04 mmol, 0.7 g), 30% aq. formaldehyde solution (4.56 mmol, 0.14 g) and methyl acrylate (4.65 mmol, 0.4 g) in toluene (5 mL) was refluxed for 2 days. The reaction mixture was concentrated in vacuo and diluted with ethyl acetate (10 mL). The ethyl acetate layer was washed with water (5 mL), brine solution (5 mL), dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by 60-120 silica gel column chromatography using 8% ethyl acetate/hexanes as eluent to give the title compound (0.15 g). Taken for next step on basis of LCMS.
methyl 1-(3- bromophenyl) pyrrolidine-3- carboxylate
A suspension of methyl 1-(3-bromophenyl)pyrrolidine-3-carboxylate (Intermediate 207, 0.42 mmol, 120 mg), bis(pinacolato)diboron (0.84 mmol, 215 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.084 mmol, 61 mg) and potassium acetate (1.26 mmol, 125 mg) was taken in dioxane (10 mL) and it was degassed for 10 min Then the reaction mixture was heated overnight at 90° C. The reaction mixture was cooled to room temperature, filtered through celite bed, washed with ethyl acetate twice and concentrated in vacuo. Then the residue was diluted with ethyl acetate (10 mL), washed with water (5 mL), brine solution (5 mL), dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by 60-120 silica gel column chromatography using 10% ethyl acetate/hexanes and as eluent to give 0.1 g of a 72:19 mixture of methyl 1-[3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl]pyrrolidine-3-carboxylate and {3-[3-(methoxycarbonyl)pyrrolidin-1-yl]phenyl}boronic acid which was taken for next step on basis of LCMS.
+
methyl 1-[3-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)phenyl]pyrrolidine- 3-carboxylate and {3-[3- (methoxycarbonyl) pyrrolidin-1- yl]phenyl}boronic acid
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (53.81 mmol, 12 g,) and dimethoxyaniline (54.9 mmol, 8.4 g) in n-BuOH (150 mL) was added dioxane-HCl (12 mL) slowly. The reaction mixture was heated to 110° C. for 3 h. It was then cooled to room temperature, diethyl ether (150 mL) was added and the resulting solid was filtered to yield the title compound (15 g).
5-bromo-N-(3,5- dimethoxyphenyl)- 4- methoxypyrimidin- 2-amine
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (11.21 mmol, 2.5 g) and 3-fluoroaniline (12.28 mmol, 1.37 g, 1.18 mL) in 2,2,2-trifluoroethanol (15 mL), trifluoroacetic acid (22.34 mmol, 2.55 g, 1.66 mL) was added and the solution was refluxed at 75° C. with constant stirring. After completion of the reaction, as monitored by TLC, water was added to the reaction mixture and extracted with EtOAc (2×50 mL). The organic layer was washed with water, 10% NaHCO3 solution and brine, dried over sodium sulfate and concentrated in vacuo to yield the title compound (2.8 g).
5-bromo-N-(3- fluorophenyl)-4- methoxypyrimidin- 2-amine
Intermediate 211: 5-bromo-2-[(3,5-dimethoxyphenyl)amino]pyrimidin-4-ol
A solution of 5-bromo-N-(3,5-dimethoxyphenyl)-4-methoxypyrimidin-2-amine (Intermediate 209, 14.7 mmol, 5 g) in n-BuOH (50 mL) and dioxane-HCl (15 mL) were heated to 110° C. in a sealed tube and stirred for 9 h. The reaction mixture was cooled to room temperature and BuOH was concentrated under vacuum. To the residue obtained, was added water (50 mL) and neutralized using 10% NaHCO3 solution. The resulting solid was filtered to yield 3.5 g of 5-bromo-2-[(3,5-dimethoxyphenyl)amino]pyrimidin-4-ol as a white solid.
5-bromo-2- [(3,5- dimethoxyphenyl) amino]pyrimidin- 4-ol
A solution of 5-bromo-N-(3-fluorophenyl)-4-methoxypyrimidin-2-amine (Intermediate 210, 5.03 mmol, 1.5 g) in n-BuOH (15 mL) and dioxane-HCl (4.5 mL) was heated to 110° C. in a sealed tube and stirred for 36 h. The reaction mixture was cooled to room temperature and BuOH was concentrated under vacuum. To the residue obtained, was added water (50 mL) and neutralized using 10% NaHCO3 solution. The resulting solid was filtered to yield 0.6 g of 5-bromo-2-[(3-fluorophenyl]amino]pyrimidin-4-ol.
5-bromo-2-[(3- fluorophenyl) amino]pyrimidin-4- ol
A solution of 5-bromo-2-[arylamino]pyrimidin-4-ol (Intermediate 211 or Intermediate 212, 1 eq) in POCl3 (15 eq) was heated to reflux for 1 h. The mixture was cooled to RT and POCl3 was removed in vacuo. To the residue obtained, was added crushed ice with stirring, and the pH was adjusted to 7-8 using 10% sodium bicarbonate solution. The solid obtained was filtered and washed with chilled water to yield the title compound. The compounds in the below table were prepared using this method and the specified starting material.
5-bromo-4-chloro-N-(3,5- dimethoxyphenyl)pyrimidin-2- amine
5-bromo-4-chloro-N-(3- fluorophenyl)pyrimidin-2- amine
NaH (1.2 eq) was dissolved in 1 mL of NMP and stirred for about 5 min at 0° C. Then either 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.1 eq) in NMP was added dropwise at 0° C. for about 10 min and stirring continued for about 20 min under N2. Then the 5-bromo-4-chloro-N-(aryl)pyrimidin-2-amine starting material in NMP was added dropwise and the reaction was stirred at room temperature overnight. After completion of the reaction, water was added and the solid obtained was filtered, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the desired product. The compounds in the below table were prepared using this method and the specified starting material.
5-bromo-N-(3,5-dimethoxyphenyl)- 4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
5-bromo-N-(3,5-dimethoxyphenyl)- 4-[5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
5-bromo-N-(3,5-dimethylphenyl)- 4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
5-bromo-N-(3,5-dimethylphenyl)- 4-[5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
5-bromo-N-(3-fluorophenyl)-4- [3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-fluorophenyl)-4- [5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
To 6 g of 5-bromo-2-chloro-4-(methylsulfanyl)pyrimidine (25.1 mmol) suspended in n-BuOH (20 mL), was added 3-(methylsulfonyl)aniline hydrochloride (25.1 mmol, 5.2 g) followed by HCl in dioxane (25 mL) and refluxed at 100° C. for 3 h. The reaction was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to give the title compound (3.1 g).
5-bromo-4-(methylsulfanyl)- N-[3-(methylsulfonyl) phenyl]pyrimidin-2-amine
A suspension of 5-bromo-4-(methylsulfanyl)-N-[3-(methylsulfonyl)phenyl]pyrimidin-2-amine (Intermediate 221, 8.02 mmol, 3 g) in dichloromethane (125 mL) was cooled to 0° C. and 3-chloroperoxybenzoic acid (77%, 27.72 mmol, 6.22 g) was added portion wise. The suspension became a clear solution after stirring at 0° C. for 30 min The reaction mixture was then allowed to warm up slowly to room temperature and stirred for 5 h. The pH of the reaction mixture was raised to 8 with the addition of 10% aq. NaHCO3 solution (50 mL), extracted with dichloromethane (3×10 mL) and the combined organic extracts were washed with brine, dried over Na2SO4, filtered and concentrated to give the title compound (1.78 g).
5-bromo-4-(methylsulfonyl)- N-[3-(methylsulfonyl) phenyl]pyrimidin-2-amine
A suspension of 5-bromo-N-(3,5-difluorophenyl)-4-(methylsulfonyl)pyrimidin-2-amine Intermediate 139 (0.85 mmol, 0.3 g), 134(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid (0.93 mmol, 0.206 g), bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.14 mmol, 0.112 g) and sodium carbonate (1.27 mmol, 0.14 g) in acetonitrile/water (5 mL:2 mL) was heated to 90° C. for 30 minutes. The reaction mixture was concentrated in vacuo and the residue taken in ethyl acetate (50 mL) was washed with water and brine. The organic layer was dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using 50% ethyl acetate/hexanes as an eluent to yield the title compound (300 mg).
1H NMR
ethyl (2E)-3-(3-{2-[(3,5-difluorophenyl)amino]-4- (methylsulfonyl)pyrimidin-5-yl}phenyl)prop-2-enoate
A suspension of 5-bromo-4-(methylsulfonyl)-N-[3-(methylsulfonyl)phenyl]pyrimidin-2-amine Intermediate 222 (3.69 mmol, 1.5 g), {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid (4.06 mmol, 0.89 g), bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.41 mmol, 0.34 g), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (1.11 mmol, 0.53 g) and sodium carbonate (4.43 mmol, 0.47 g) in acetonitrile/water (5:1) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate (50 mL) and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using EtOAc/hexanes as an eluent to yield the title compound (1.02 g).
1H NMR
ethyl (2E)-3-{3-[4-(methylsulfonyl)-2-{[3- (methylsulfonyl)phenyl]amino}pyrimidin-5- yl]phenyl}prop-2-enoate
A suspension of 5-bromo-N-(3,5-difluorophenyl)-4-(methylsulfonyl)pyrimidin-2-amine Intermediate 139 (1.38 mmol, 0.5 g), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.65 mmol, 0.46 g), bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.14 mmol, 0.112 g) and sodium carbonate (1.37 mmol, 0.146 g) in acetonitrile/water (10 mL:3 mL) was heated to 90° C. for 30 minutes. The reaction mixture was concentrated in vacuo and the residue taken in ethyl acetate (50 mL) was washed with water and brine. The organic layer was dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using 50% ethyl acetate/hexanes as an eluent to yield the title compound (400 mg).
ethyl 5-{2-[(3,5-difluorophenyl)amino]-4- (methylsulfonyl)pyrimidin-5-yl}pyridine-3- carboxylate
A suspension of 5-bromo-4-(methylsulfonyl)-N-[3-(methylsulfonyl)phenyl]pyrimidin-2-amine Intermediate 224 (3.94 mmol, 1.6 g), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (4.33 mmol, 1.2 g), bis(diphenylphosphino)ferrocene]dichloropalladium(H) complex with CH2Cl2 (0.44 mmol, 0.36 g), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (1.12 mmol, 0.56 g,) and sodium carbonate (4.72 mmol, 0.5 g) in acetonitrile/water (5:1) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate (50 mL) and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using EtOAc/hexanes as an eluent to yield the title compound (1.05 g).
ethyl 5-[4-(methylsulfonyl)-2-{[3- (methylsulfonyl)phenyl]amino}pyrimidin-5- yl]pyridine-3-carboxylate
To a suspension of K2CO3 (8.8 mmol, 1.2 g) in acetonitrile (25 mL), was added 5-bromo-2,4-dichloropyrimidine (8.8 mmol, 2 g) and the reaction mixture was cooled to −5 to −10° C. 3-(trifluoromethyl)-1H-pyrazole (8.8 mmol, 1.2 g) was dissolved in 25 mL of acetonitrile and added dropwise. After the addition, the reaction mixture was slowly warmed to RT and stirred for 5 h. The reaction mixture was filtered through a celite bed and acetonitrile was removed in vacuo. The crude mass was purified by silica gel column chromatography (60-120 mesh; product eluted with 2% EtOAc/hexanes) to yield 1.4 g of the product.
To a suspension of Cs2CO3 (2.4 mmol, 780 mg) in DMF (4 mL), were added 5-bromo-2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 227, 1.2 mmol, 400 mg) and 3,5-dimethylaniline (1.4 mmol, 177 mg) and heated to 100° C. in a sealed tube for 3 h. The reaction mixture was then diluted with EtOAc and passed through a celite bed. The organic layer was washed with brine and dried over sodium sulphate. It was further concentrated and the crude mass was purified by silica gel column chromatography (60-120 mesh; product eluted with 5% EtOAc/hexanes) to yield 330 mg of 5-bromo-N-(3,5-dimethylphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine.
5-bromo-N-(3,5-dimethylphenyl)- 4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (1 eq) and arylamine (1.02 eq) in n-BuOH (12 v/w) was added dioxane-HCl (1 v/w) slowly. The reaction mixture was heated to 110° C. for 3 h. It was then cooled to room temperature, diethyl ether (150 mL) was added and the resulting solid was filtered to yield the product.
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (1.3-1.5 eq) and arylamine (1 eq) in 2,2,2-trifluoroethanol (10 v/w), trifluoroacetic acid (2-4 eq) was added and the solution was refluxed at 75° C. for 2-12 h with constant stirring. Water was added to the reaction mixture and extracted with EtOAc (2×50 mL). The organic layer was washed with water, 10% NaHCO3 solution and brine, dried over sodium sulfate and concentrated in vacuo to yield the product. The compounds in the below table were prepared using the above methods as indicated and the starting material specified.
N-(5-bromo-4-methoxypyrimidin-2-yl)-1-[(4- methylphenyl)sulfonyl]-1H-indol-5-amine
5-bromo-N-(2,3-dihydro-1H- inden-5-yl)-4-methoxypyrimidin-2-amine
N-(1,3-benzodioxol-5- yl)-5-bromo-4-methoxypyrimidin-2-amine
5-bromo-4-methoxy-N-[3- methoxy-5-(methylsulfonyl) phenyl]pyrimidin-2-amine
a)Method A
b)Method B
A mixture of the 4-methoxypyrimidine derivative (1 eq) and aq. sodium thiomethoxide (21% w/v, 4 eq) and DMF (8 ml/g SM) was heated to 60° C. for 2 h; cooled to room temperature, poured into water (150 mL) and acidified with 1.5 N HCl solution. The precipitated solid was filtered to yield the product.
A solution of the 4-methoxypyrimidine derivative (1 g) in n-BuOH (7 ml/g SM) and 4M HCl in dioxane (4 ml/g SM) were heated to 110° C. in a sealed tube and stirred for 18-36 h. The reaction mixture was cooled to room temperature and BuOH was concentrated under vacuum. To the residue obtained, was added water (50 mL) and neutralized using 10% NaHCO3 solution. The resulting solid was filtered and further purified by column chromatography using ethyl acetate/hexanes as eluent to yield the product.
The compounds in the below table were prepared using the above methods as indicated and the starting material specified.
5-bromo-2-({1-[(4-methylphenyl)- sulfonyl]-1H-indol-5-yl}amino)- pyrimidin-4-ol
5-bromo-2-(2,3-dihydro-1H-inden-5- ylamino)pyrimidin-4-ol
2-(1,3-benzodioxol-5- ylamino)-5-bromopyrimidin-4-ol
5-bromo-2-{[3-methoxy-5- (methylsulfonyl)phenyl]amino}- pyrimidin-4-ol
c)Method C
d)Method D
A solution of 5-bromo-2-[arylamino]pyrimidin-4-ol derivative in POCl3 (3-10 ml/g SM) was heated to reflux for 1 h. It was cooled to RT and POCl3 was removed in vacuo. To the residue obtained, was added crushed ice with stirring, and the pH was adjusted 7-8 using 10% sodium bicarbonate solution. The solid obtained was filtered and washed with chilled water to yield the title compound. The compounds in the below table were prepared using the above method and the starting material specified.
N-(5-bromo-4-chloropyrimidin- 2-yl)-1-[(4-methylphenyl)- sulfonyl]-1H-indol-5-amine
5-bromo-4-chloro-N-(2,3- dihydro-1H-inden-5- yl)pyrimidin-2-amine
N-(1,3-benzodioxol-5-yl)-5-bromo-4- chloropyrimidin-2-amine
5-bromo-4-chloro-N-[3- methoxy-5-(methylsulfonyl)- phenyl]pyrimidin-2-amine
e)N,Ndiethylaniline (0.5 eq) was also added
NaH (1.2 eq) was dissolved in 1 mL of NMP and stirred for about 5 min at 0° C. Then either 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.1 eq) in NMP was added dropwise at 0° C. for 10 min and stirring continued for 20 min under N2. Then the 5-bromo-4-chloro-N-(aryl)pyrimidin-2-amine derivative (1 eq) in NMP was added dropwise and the reaction was stirred at room temperature overnight. After completion of the reaction, water was added and the solid obtained was filtered, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the desired product. The compounds in the below table were prepared using the above method and the starting material specified.
N-{5-bromo-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-yl}-1-[(4- methylphenyl)sulfonyl]-1H-indol-5- amine
5-bromo-N-(2,3-dihydro-1H-inden- 5-yl)-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
5-bromo-N-(2,3-dihydro-1H-inden- 5-yl)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
N-(1,3-benzodioxol-5-yl)- 5-bromo-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
N-(1,3-benzodioxol-5-yl)- 5-bromo-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-[3-methoxy-5- (methylsulfonyl)phenyl]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-2- amine
f)DMSO was used as solvent, 12 h
g)THF was used as solvent, reflux, 7 h
To 6 g of 5-bromo-2-chloro-4-(methylsulfanyl)pyrimidine (1.5 eq) suspended in n-BuOH (30 v/w), was added 3-methoxy-5-(methylsulfonyl)aniline (1 eq followed by. HCl in dioxane (25 mL) and refluxed at 100° C. for 3 h. The reaction was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to get.
5-bromo-N-[3-methoxy-5- (methylsulfonyl)phenyl]-4- (methylsulfanyl)pyrimidin-2- amine
A suspension of 5-bromo-N-[3-methoxy-5-(methylsulfonyl)phenyl]-4-(methylsulfanyl)pyrimidin-2-amine (Intermediate 247, 1 eq) in acetone was cooled to 0° C. and 3-chloroperoxybenzoic acid (77%, 2 eq) was added portion wise. After the completion of the reaction, acetone was removed in vacuo and the residue taken in EtOAc was washed with 10% aq. NaHCO3 solution (50 mL) and water, dried over Na2SO4, filtered and concentrated to give the title compound.
5-bromo-N-[3- methoxy-5- (methylsulfonyl) phenyl]-4- (methylsulfonyl) pyrimidin-2- amine
A suspension of 5-bromo-N-[3-methoxy-5-(methylsulfonyl)phenyl]-4-(methylsulfonyl)pyrimidin-2-amine Intermediate 248 (1 eq), {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid (1.5 eq), bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (10 mol %) and sodium carbonate (1.5 eq) in acetonitrile/water (10 mL:5 mL) was heated to 90° C. for 30 minutes. The reaction mixture was concentrated in vacuo and the residue taken in ethyl acetate (50 mL) was washed with water and brine. The organic layer was dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using 50% ethyl acetate/hexanes as an eluent to yield Intermediate 249. MS(ES): 532 (M+1) for C24H25N3O7S2.
NaH (60% dispersion in mineral oil, 2 eq) was dissolved in 1 mL of DMF and stirred for about 5 min at 0° C. Then 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (2 eq) in NMP (2 mL) was added dropwise at 0° C. for about 10 min and stirring continued for about 20 min under N2. Then 5-bromo-N-[3-methoxy-5-(methylsulfonyl)phenyl]-4-(methylsulfonyl)pyrimidin-2-amine (Intermediate 248, 1 eq) in DMF was added dropwise and the reaction was stirred overnight at room temperature. Water was added and the solid obtained was filtered off, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the product. The compounds in the below table were prepared following this procedure and using the specified starting material.
5-bromo-N-[3- methoxy-5- (methylsulfonyl) phenyl]-4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- amine
5-bromo-N-[3- methoxy-5- (methylsulfonyl) phenyl]-4-[5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- amine
A solution of 3-methyl-5-trifluoromethyl pyrazole (2.87 mmol, 431 mg) in NMP (4 mL) was added slowly to a suspension of sodium hydride (3.13 mmol, 75 mg) in NMP (1 mL) at 0° C. The reaction mixture was stirred for 10 min at 0° C. A solution of 5-bromo-4-chloro-N-(3,5-dimethoxyphenyl)pyridine-2-amine (Intermediate 213, 2.61 mmol, 900 mg) in NMP (4 mL) was added slowly to the reaction mixture at 0° C. and stirred overnight at RT. The reaction mixture was then quenched with ice cold water at 0-5° C., and the pH adjusted to 2 with 1.5 N HCl solution. It was then was extracted with ethyl acetate, and the organic layer was washed with water, dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by column chromatography using 10-15% ethyl acetate/hexanes to yield 900 mg of the title compound.
5-bromo-N-(3,5- dimethoxyphenyl)-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-2-amine
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (1 eq) and arylamine (1.02 eq) in n-BuOH (12 v/w based on the former), was added dioxane-4M HCl (4 v/w based on the former) and heated to 110° C. in a sealed tube for 18-36 h. The reaction mixture was cooled to room temperature and BuOH was concentrated under vacuum. To the residue obtained, was added water (50 mL) and 10% NaHCO3 solution. The resulting solid was filtered and further purified by column chromatography to yield the product. The compounds in the below table were prepared using this method and the specified starting material.
1-{3-[(5- bromo-4- hydroxypyri- midin-2- yl)amino] phenyl} ethanone
5-bromo-2- [(3- methylphenyl) amino] pyrimidin- 4-ol
A solution of 5-bromo-2-[arylamino]pyrimidin-4-ol (1 eq) in POCl3 (3-10 v/w) was heated to reflux for 1 h. It was cooled to RT and POCl3 was removed in vacuo. To the residue obtained, was added crushed ice with stirring, and the pH was adjusted to 7-8 using 10% sodium bicarbonate solution. The solid obtained was filtered and washed with chilled water to yield the title compound. The compounds in the below table were prepared using this method and the specified starting material.
1-{3-[(5-bromo- 4- chloropyrimidin- 2- yl)amino]phenyl} ethanone
5-bromo-4- chloro-N-(3- methylphenyl) pyrimidin-2- amine
a)N,N-diethylaniline (0.2 eq) and MeCN (10 v/w) were also added
NaH (1.2 eq) was dissolved in 1 mL of NMP and stirred for about 5 min at 0° C. Then 3-(trifluoromethyl)-1H-pyrazole/5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.1 eq) in NMP was added dropwise at 0° C. for about 10 min and stirring continued for about 20 min under N2. Then 5-bromo-4-chloro-N-(aryl)pyrimidin-2-amine (1 eq) in NMP was added dropwise and the reaction was stirred overnight at room temperature. Water was added and the solid obtained was filtered, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the desired product. The compounds in the below table were prepared using this method and the specified starting material.
1-[3-({5-bromo-4- [3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- yl}amino)phenyl] ethanone
1-[3-({5-bromo-4- [5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- yl}amino)phenyl] ethanone
5-bromo-N-(3- methylphenyl)-4- [3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- amine
5-bromo-N-(3- methylphenyl)-4- [5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- amine
b)DMF was used as solvent, 12 h
To a suspension of 5-bromo-2,4-dichloropyrimidine (44 mmol, 10 g) in acetonitrile (100 mL), was added K2CO3 (44 mmol, 6.1 g) and the reaction mixture was cooled to −5 to −10° C. 5-methyl-3-(trifluoromethyl)-1H-pyrazole (44 mmol, 6.6 g) was dissolved in 100 mL of acetonitrile and added dropwise. After the addition, the reaction mixture was slowly warmed to RT and stirred overnight. The reaction mixture was filtered through a celite bed and acetonitrile was removed in vacuo. The crude mass was purified by silica gel column chromatography (60-120 mesh; product eluted with 1% EtOAc/hexanes) to yield 5 g of the product.
5-bromo-2-chloro- 4-[5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidine
To a suspension of cesium carbonate (2 eq) in dry DMF (4 mL), were added 3-aminobenzamide (1.15 eq) and 5-bromo-2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 227, 1 eq) or 5-bromo-2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 261, 1 eq). The reaction vessel was sealed and heated to 100° C. for 5 h. The reaction mixture was diluted with EtOAc and filtered through a celite bed. The filtrate was washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh). The column was eluted with 3% Methanol/Chloroform to yield the desired product. The compounds in the below table were prepared using this method and the specified starting material.
3-({5-bromo-4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- yl}amino) benzamide
3-({5-bromo-4-[5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- yl}amino)benz- amide
To 6 g of 5-bromo-2-chloro-4-(methylsulfanyl)pyrimidine (1.7 eq) suspended in n-BuOH (20 v/w), was added 3-aminobenzonitrile (1 eq) followed by 4M HCl in dioxane (0.25 eq) and refluxed overnight at 100° C. The reaction was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to give Intermediate 264.
3-{[5-bromo-4- (methylsulfanyl) pyrimidin-2- yl]amino} benzonitrile
A suspension of 3-{[5-bromo-4-(methylsulfanyl)pyrimidin-2-yl]amino}benzonitrile (Intermediate 264, 1 eq) in dichloromethane (50 v/w) was cooled to 0° C. and 3-chloroperoxybenzoic acid (77%, 4.5 eq) was added portion wise and stirred for 4 h. It was further diluted with dichloromethane and washed with 10% aq. NaHCO3 solution and water, dried over Na2SO4, filtered and concentrated to give Intermediate 265.
3-{[5-bromo-4- (methylsulfonyl) pyrimidin-2- yl]amino} benzonitrile
NaH (60% dispersion in mineral oil, 2 eq) was dissolved in 1 mL of DMF and stirred for about 5 min at 0° C. Then 3-(trifluoromethyl)-1H-pyrazole/5-methyl-3-(trifluoromethyl)-1H-pyrazole (2 eq) in DMF (2 mL) was added dropwise at 0° C. for about 10 min and stirring continued for about 20 min under N2. Then 3-{[5-bromo-4-(methylsulfonyl)pyrimidin-2-yl]amino}benzonitrile (Intermediate 265, 1 eq) in DMF was added dropwise and the reaction was stirred for 2.5 h at room temperature. After completion of the reaction, water was added and the solid obtained was filtered off, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the title compound. The compounds in the below table were prepared using this method and the specified starting material.
3-({5-bromo-4- [3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- yl}amino)ben- zonitrile
3-({5-bromo-4- [5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-2- yl}amino)ben- zonitrile
A suspension of 5-bromo-2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 227, 1 eq) or 5-bromo-2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 261, 1 eq), 3-(trans-2-carboxyvinyl)phenylboronic acid (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (10 mol %) and sodium carbonate (2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 3-5% MeOH/CHCl3 as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
(2E)-3-(3-{2- chloro-4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2- enoic acid
(2E)-3-(3-{2- chloro-4-[5- methyl-3- (trifluoromehtyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2- enoic acid
A solution of 5-bromo-2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 227, 1 eq) or 5-bromo-2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 261, 1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl]pyridine-3-carboxylate (1 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (20 mol %) and sodium carbonate (1 eq) in acetonitrile (10 mL)/water (10 mL) was degassed and heated to 90° C. for 20′ under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 35% ethyl acetate/hexanes as an eluent. The compounds in the below table were prepared using this method and the specified starting material.
ethyl 5-{2-chloro- 4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-chloro- 4-[5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
A solution of 5-bromo-2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 227, 1 eq) or 5-bromo-2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 261, 1 eq), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (20 mol %) and sodium carbonate (1 eq) in acetonitrile (10 mL)/water (10 mL) was degassed and heated to 90° C. for 20 hours under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 30% ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
methyl 5-{2-chloro- 4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}- 2-methoxypyridine- 3-carboxylate
methyl 5-{2-chloro- 4-[5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}- 2-methoxypyridine- 3-carboxylate
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (53.8 mmol, 12 g) in n-BuOH (60 mL) was added 3-chloroaniline (59.1 mmol, 7.47 g, 6.2 mL) and 4 N HCl in dioxane (36 mL). The reaction mixture was heated at 80° C. for 20 h. It was then cooled to room temperature, acetonitrile (120 mL) was added and the resulting solid was filtered to yield 6 g of 5-bromo-2-[(3-chlorophenyl)amino]pyrimidin-4-ol as white solid.
5-bromo-2-[(3- chlorophenyl) amino] pyrimidin-4- ol
To 6 g of 5-bromo-2-[(3-chlorophenyl)amino]pyrimidin-4-ol (Intermediate 274, 20 mmol), was added 30 mL of POCl3 (323 mmol, 49.5 g) and the mixture heated to reflux for 1 h. It was cooled to room temperature and POCl3 was removed in vacuo. It was then diluted with water then extracted with ethyl acetate, organic layer washed successively with 10% sodium bicarbonate solution and water, dried over Na2SO4, filtered and concentrated to yield 3.0 g of 5-bromo-4-chloro-N-(3-chlorophenyl)pyrimidin-2-amine.
5-bromo-4-chloro-N-(3- chlorophenyl)pyrimidin-2-amine
A solution of 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.2 eq) in DMF (4.0 mL) was added slowly to a suspension of sodium hydride (1.2 eq) in DMF (4.0 mL) at 0° C. The reaction mixture was stirred for 1 h at room temperature. A solution of 5-bromo-4-chloro-N-(3-chlorophenyl)pyrimidin-2-amine (Intermediate 275, 1 eq) in DMF (4.0 mL) was added slowly to the reaction mixture at 0° C. and allowed to warm to ambient temperature over 2-3 h. The mixture was quenched with ice cold water at 0-5° C., pH adjusted to 2 with 1.5 N HCl and then extracted with ethyl acetate. The organic layer was washed with water, dried over Na2SO4, filtered and concentrated. The crude mass was purified by silica gel column chromatography (product eluted with 10-15% ethyl acetate/hexanes) to yield the desired product. The compounds in the below table were prepared using this method and the specified starting materials.
5-bromo-N-(3-chlorophenyl)-4-[3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-chlorophenyl)-4-[5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-2-amine
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (1 eq) and 3-fluoro-5-methylaniline (1.01 eq) in n-BuOH (5 v/w based on the former) was added dioxane-HCl (3 v/w based on the former) and heated to 80° C. in a sealed tube for 3 h. The reaction mixture was cooled to room temperature and BuOH was concentrated under vacuum. To the residue obtained, was added MeCN and stirred at 10-15° C. for 30 minutes. The resulting solid was filtered and washed with MeCN to yield Intermediate 278.
5-bromo-N-(3-fluoro-5- methylphenyl)-4-methoxypyrimidin- 2-amine
A mixture of 5-bromo-N-(3-fluoro-5-methylphenyl)-4-methoxypyrimidin-2-amine Intermediate 278 (1 eq) and aq. sodium thiomethoxide (21% aq. soln (w/v), 5 v/w based on Intermediate 278) and DMF (10 v/w) was heated to 80° C. for 2 h. The reaction mass was cooled to room temperature and quenched with ice-cold water and the pH adjusted to 2 with 1.5 N HCl solution. The precipitated solid was filtered and washed with water to yield Intermediate 279.
5-bromo-2-[(3-fluoro-5- methylphenyl)amino]- pyrimidin-4-ol
To a stirred solution of 5-bromo-2-chloro-4-methoxypyrimidine (1 eq) and arylamine (1.02 eq) in n-BuOH (12 v/w based on the former) was added 4M HCl in dioxane (4 v/w based on the former) and heated to 110° C. in a sealed tube for 18-36 h. The reaction mixture was cooled to room temperature and BuOH was concentrated under vacuum. To the residue obtained, was added water (50 mL) and 10% NaHCO3 solution. The resulting solid was filtered and further purified by column chromatography to yield the product. The compounds in the below table were prepared using this procedure and the specified starting material.
5-bromo-2-[(2-fluoro-5- methylphenyl)amino]- pyrimidin-4-ol
5-bromo-2-[(3-chloro-5- methoxyphenyl)amino]- pyrimidin-4-ol
5-bromo-2-[(3-methoxy-5- methylphenyl)amino]- pyrimidin-4-ol
A solution of 5-bromo-2-[arylamino]pyrimidin-4-ol (1 eq) in POCl3 (5 eq) was heated to reflux for 1 h. It was cooled to RT and POCl3 was removed in vacuo. To the residue obtained, was added crushed ice with stirring, and the pH was adjusted to 7-8 using 10% NaHCO3 solution. The solid obtained was filtered and washed with chilled water to yield the title compound. The compounds in the below table were prepared using this procedure and the specified starting material.
5-bromo-4-chloro-N-(3- fluoro-5-methylphenyl)- pyrimidin-2-amine
5-bromo-4-chloro-N-(2- fluoro-5-methylphenyl)- pyrimidin-2-amine
5-bromo-4-chloro-N-(3- chloro-5-methoxyphenyl)- pyrimidin-2-amine
5-bromo-4-chloro-N-(3- methoxy-5-methylphenyl)- pyrimidin-2-amine
a)N,N-diethylaniline (0.5 eq), Et4N+Cl− (0.5 eq) and MeCN (10 v/w) were also added
NaH (1.2 eq) was dissolved in 1 mL of DMF and stirred for about 5 min at 0° C. Then 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.1 eq) in NMP was added drop-wise at 0° C. over about 10 min and stirring continued for about 20 min under N2. Then 5-bromo-4-chloro-N-(aryl)pyrimidin-2-amine (1 eq) in DMF was added dropwise and the reaction was stirred overnight at RT. Water was added and the solid obtained was filtered, dried and purified by silica gel column chromatography using ethyl acetate/hexanes (2:8) as eluent to yield the product. The compounds in the below table were prepared using this procedure and the specified starting material.
5-bromo-N-(3-fluoro-5- methylphenyl)-4-[3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-fluoro-5- methylphenyl)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(2-fluoro-5- methylphenyl)-4-[3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(2-fluoro-5- methylphenyl)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-chloro-5- methoxyphenyl)-4-[3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-chloro-5- methoxyphenyl)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-methoxy-5- methylphenyl)-4-[3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
5-bromo-N-(3-methoxy-5- methylphenyl)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-2-amine
To 5-bromo-2-chloropyridine-3-carboxylic acid (4.21 mmol, 1 g) and 1-methylpyrrolidin-3-ol (17.5 mmol, 1.88 mL, 1.77 g) taken in tert-butanol (25 mL), was added sodium tert-butoxide (16.9 mmol, 1.64 g) and heated to 85° C. for 2 h. The solvent was removed in vacuo and the reaction mixture was diluted with water. The aqueous layer was washed with EtOAc, then carefully acidified with 1 N HCl (pH=5). Water was distilled off and the residue taken in a mixture of MeOH and EtOAc (1:1) was passed through was a celite bed and the resultant crude product (2 g) was used without further purification in the next step.
5-bromo-2-[(1- methylpyrrolidin-3- yl)oxy]pyridine-3- carboxylic acid
To a suspension of 5-bromo-2-[(1-methylpyrrolidin-3-yl)oxy]pyridine-3-carboxylic acid (Intermediate 295, 4.52 mmol, 1.36 g) in MeOH (13 ml) at 0° C., was slowly added thionyl chloride (8.4 mmol, 0.999 g). After the addition was complete, the reaction mixture was refluxed for 2 h. The solvent was concentrated in vacuo and the crude mixture was taken in EtOAc (30 mL), washed with aq. NaHCO3 solution, water and brine, dried over Na2SO4, filtered and concentrated to obtain 1.2 g of the title compound.
methyl 5-bromo-2-[(1- methylpyrrolidin-3- yl)oxy]pyridine-3- carboxylate
A suspension of methyl 5-bromo-2-[1-methylpyrrolidin-3-yl)oxy]pyridine-3-carboxylate (Intermediate 296, 1.5 mmol, 0.5 g), bis(pinacolato)diboron (3.1 mmol, 0.804 g), └1,1′-bis(diphenylphosphino)ferrocene┘dichloropalladium(II) (0.3 mmol, 0.219 g) and potassium acetate (4.6 mmol, 0.444 g) was taken in dioxane (5 mL) and it was degassed for 10 min. Then the reaction mixture was heated to 100° C. for 1 h. The reaction mixture was diluted with EtOAc, filtered through a celite bed, washed with water (5 mL) and brine (5 mL), dried over Na2SO4 and concentrated in vacuo to obtain the title compound as a crude mass (0.7 g) which was taken to the next step without further purification. HPLC-MS analysis indicates the presence of both the boronic acid and boronate pinacol ester.
{5-(methoxycarbonyl)-6-[(1- methylpyrrolidin-3- yl)oxy]pyridin-3- yl}boronic acid
To 5-bromo-2-chloropyridine-3-carboxylic acid (4.2 mmol, 1 g) and 1-(pyridin-4-yl)ethanol (16.9 mmol, 2.08 g) taken in tert-butanol (20 mL), was added sodium tert-butoxide (16.9 mmol, 1.63 g) and the mixture heated to 85° C. for 1 h. The solvent was removed in vacuo and the reaction mixture was diluted with water. The aqueous layer was washed with EtOAc, then carefully acidified with 1 N HCl (pH=5). Water was distilled off and the residue taken in a mixture of MeOH and EtOAc (1:1) was passed through was a celite bed. The filtrate was concentrated in vacuo and the resultant crude product (2.2 g) was used in the next step without further purification.
5-bromo-2-[1-(pyridin-4- yl)ethoxy]pyridine-3- carboxylic acid
A solution of 5-bromo-2-[1-(pyridin-4-yl)ethoxy]pyridine-3-carboxylic acid (Intermediate 298, 6.81 mmol, 2.2 g) taken in MeOH (20 mL) was cooled to 0° C. Thionyl chloride (0.99 mL, 13.62 mmol, 2 eq) was added slowly to the reaction mixture. After the addition was complete, the reaction mixture was refluxed for 2 h. The solvent was removed in vacuo and the crude mixture was taken in EtOAc (30 mL), washed with aq. NaHCO3 solution, water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 20% ethyl acetate/hexane as the eluent to yield 1 g of the title compound.
methyl 5-bromo-2-[1-(pyridin-4- yl)ethoxy]pyridine-3-carboxylate
A suspension of methyl 5 -bromo-2-[1-(pyridin-4-yl)ethoxy]pyridine-3 -carboxylate (Intermediate 299, 1.3 mmol, 0.440 g), bis(pinacolato)diboron (2.61 mmol, 0.663 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.261 mmol, 0.213 g) and potassium acetate (3.91 mmol, 0.384 g) was taken in dioxane (10 mL) and it was degassed for 10 min. Then the reaction mixture was heated to 100° C. for 90 min. The reaction mixture was cooled to room temperature, diluted with ethyl acetate, filtered through a celite bed and concentrated in vacuo to yield the product as a crude mass (0.5 g) which was taken to the next step without further purification LCMS analysis indicated the presence of a mixture of Boronic acid (50%) and boronate (30%).
methyl 2-[1-(pyridin-4-yl)ethoxy]-5-(4,4,5,5- tetramethyl-1,3,2-dioxaborolan-2- yl)pyridine-3-carboxylate
To 5-bromo-2-chloropyridine-3-carboxylic acid (4 2 mmol, 1 g) and 2-(1H-imidazol-1-yl)ethanol (12.6 mmol, 1.42 g) taken in tert-butanol (25 mL) was added sodium tert-butoxide (12.7 mmol, 1.231 g) and the reaction mixture heated to 90° C. for 2 h. The solvent was removed in vacuo and the reaction mixture was diluted with water. The aqueous layer was washed with EtOAc, then carefully acidified with 1 N HCl (pH=5). Water was distilled off and the residue taken in a mixture of MeOH and EtOAc (1:1) was passed through was a celite bed. The filtrate was concentrated in vacuo and the resultant crude product was taken to the next step without further purification (1.3 g).
5-bromo-2-[2-(1H-imidazol-1- yl)ethoxy]pyridine-3-carboxylic acid
To a suspension of 5-bromo-2-[2-(1H-imidazol-1-yl)ethoxy]pyridine-3-carboxylic acid (Intermediate 301, 4.16 mmol, 1.3 g) in MeOH (50 mL) at 0° C., was slowly added thionylchloride (6.4 mmol, 0.74 g). After the addition was complete, the reaction mixture was refluxed at 85° C. for 2 h. The solvent was removed in vacuo and the crude mixture taken in EtOAc (30 mL), was washed with aq. NaHCO3 solution, water and brine, dried over Na2SO4, filtered and concentrated to obtain 1.3 g of the title compound which was taken as such to the next step.
methyl 5-bromo-2-[2-(1H-imidazol-1- yl)ethoxy]pyridine-3-carboxylate
A suspension of Intermediate 302 (1.53 mmol, 0.5 g), bis(pinacolato)diboron (3.06 mmol, 0.778 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.31 mmol, 0.224 g) and potassium acetate (4.6 mmol, 0.452 g) was taken in dioxane (50 mL) and it was degassed for 10 min. Then the reaction mixture was heated to 100° C. for 1 h. The reaction mixture was cooled to room temperature, diluted with ethyl acetate, filtered through a celite bed and concentrated in vacuo to obtain 0.7 g of the crude mass which was taken to the next step without further purification. LCMS analysis indicated the presence of a mixture of boronic acid (42%) and boronate (17%).
{6-[2-(1H-imidazol-1- yl)ethoxy]-5- (methoxycarbonyl)- pyrimidin-3-yl}boronic acid
To a suspension of t-BuONa (4.36 g, 45 mmol) in THF (100 mL) was added a solution of 1,3-dimethoxypropan-2-ol (4.55 g, 37.8 mmol in 50 mL THF) at 0° C. over a period of 30 min. The reaction mixture was stirred at 10° C. for 1 h and then cooled to 0° C. To this reaction mixture was added a solution of ethyl 5-bromo-2-chloronicotinate (10.0 g, 37 8 mmol in 100 mL THF) over a period of 45 min. The reaction mixture was allowed to come to room temperature and stirred for 2 h. The reaction mixture was quenched with cold water (200 mL) and extracted with ethyl acetate (200 mL×3). The combined organic layer was washed with water (200 mL), brine solution (200 mL), dried over anhydrous Na2SO4 and evaporated under reduced pressure to get crude compound. The crude compound was purified by column chromatography (Silica gel, 100-200 mesh) using 6% ethyl acetate in pet ether as mobile phase to get 6.5 g of the title compound. The compounds in the below table were prepared using this method and the indicated starting material.
ethyl 5-bromo-2-(2-(4- methylpiperazin-1- yl)ethoxy)nicotinate
ethyl 5-bromo-2- isopropoxynicotinate
ethyl 5-bromo-2-(2- (pyridin-4- yl)ethoxy)nicotinate
ethyl 5-bromo-2-(1,3- dimethoxypropan-2- yloxy)nicotinate
ethyl 5-bromo-2-((1- methyl-1H-imidazol-2- yl)methoxy)nicotinate
5-Bromo-2-chloronicotinic acid (1.25 g, 5.27 mmol) was suspended in tert-butanol (35.4 ml) and N-(2-hydroxyethyl)acetamide (1.95 ml, 21.08 mmol) was added. Potassium tert-butoxide (2.37 g, 21.08 mmol) was added and the reaction mixture was heated at 90° C. for 1 hour. Tert-butanol was removed in vacuo and the resulting material was diluted in ethyl acetate and neutralized with 1N HCl (2 mL). The organic layers were washed with 5 mL of 1N HCl, water, then brine. Combined organic layers were dried over magnesium sulfate, filtered, and concentrated to dryness, then dried under high vacuum to obtain the title compound as an off-white solid (1.44 g).
MS(ES): 304.9 (M+H) for C10H11BrN2O4
1H NMR (300 MHz, DMSO-d6) δ ppm 1.80 (s, 3 H) 3.40 (q, J=5.97 Hz, 2 H) 4.34 (t, J=5.93 Hz, 2 H) 8.22 (d, J=2.64 Hz, 1H) 8.46 (d, J=2.64 Hz, 1H) 13.24 (br. s., 1H)
The compound in the below table was prepared using the general method described above for Intermediate 310 and the starting material (SM) indicated.
5-bromo-2-(3- (methylthio)- propoxy)nicotinic acid
2-(2-acetamidoethoxy)-5-bromonicotinic acid, Intermediate 310 (1.44 g, 4.74 mmol) was suspended in ethanol (15.5 ml), and concentrated sulfuric acid (0.38 ml, 7.12 mmol) was added. The reaction mixture was heated at 60° C. for 3 h then stirred at rt overnight. The reaction mixture was concentrated, diluted with ethyl acetate, washed with water, brine, and dried over MgSO4. The crude material was purified by flash chromatography (4 g, silica column, 0-8% methanol in dichlormethane over 25 min). Fractions were combined to give the title compound as a white solid (1.47 g).
MS(ES): 333.0 (M+H) for C12H15BrN2O4
1H NMR (300 MHz, DMSO-d6) δ ppm 1.25 -1.33 (m, 3H) 1.80 (s, 3H) 3.39 (q, 2H) 4.24-4.31 (m, 2H) 4.33 (t, J=5.37 Hz, 2H) 7.96 (br. s., 1H) 8.25 (d, J=2.64 Hz, 1H) 8.49 (d, J=2.45 Hz, 1H)
The compound in the below table was prepared using the general method described above for Intermediate 312 and the starting material (SM) indicated.
ethyl 5-bromo- 2-(3- (methylthio)- propoxy)- nicotinate
Ethyl 5-bromo-2-(3-(methylthio)propoxy)nicotinate (Intermediate 313, 0.4504 g, 1.35
mmol) and mCPBA (0.997 g, 4.04 mmol) were suspended in dichloromethane (5.37 ml) and stirred at rt for 3 h. Then added 3 mL of dichloromethane and 0.17 g of mCPBA were added and the reaction mixture was stirred overnight. Additional 0.46 g of mCPBA were added and the mixture was stirred at rt 5 hours. The reaction mixture was concentrated in vacuo, dissolved in DCM, and filtered. The filtrate was purified by flash chromatography (12 g silica column, 0-10% methanol in dichloromethane over 30 min). Fractions were combined and dried in vacuo to obtain the title compound as a white solid (0.45 g). MS(ES): 368.0 (M+H) for C12H16BrNO5S
1H-NMR (300 MHz, DMSO-d6): δ ppm 1.30 (t, J=7.16 Hz, 3H) 2.08-2.22 (m, 2H) 3.00 (s, 3H) 3.23-3.30 (m, 2H) 4.29 (q, J=7.16 Hz, 2H) 4.42 (t, J=6.22 Hz, 2H) 8.27 (d, J=2.45 Hz, 1H) 8.50 (d, J=2.45 Hz, 1H).
The compound in the table below was prepared using the general sequence described above for the preparation of Intermediates 313 and 314 and the starting material (SM) indicated.
ethyl 5-bromo- 2-(2- (methylsulfonyl)- ethoxy)nicotinate
To an argon purged solution of ethyl5-bromo-2-(1,3-dimethoxypropan-2-yloxy)nicotinate (Intermediate 308, 4.5 g, 12.9 mmol) in dioxane (135 mL, 30 vol.) was added bis(pinacolato)diboron (3.93 g, 15.5 mmol) at room temperature. The reaction mixture was degassed for 15 min (argon) and was added Pd(dppf)Cl2 (1.89 g, 2.5 mmol) followed by potassium acetate (3.8 g, 38 mmol). The reaction mixture was heated at 90° C. for 2 h. The solvent was evaporated under reduced pressure and the residue was diluted with 30% ethyl acetate in pet-ether (200 mL) and passed through neutral alumina bed. The filtrate was evaporated under reduced pressure to get the crude title compound.
The compounds in the table below were prepared using this method and the indicated starting material.
ethyl 2-(2-(4- methylpiperazin-1- yl)ethoxy)-5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)nicotinate
ethyl 2-isopropoxy-5- (4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2- yl)nicotinate
ethyl 2-(2-(pyridin-4- yl)ethoxy)-5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)nicotinate
ethyl 2-(1,3- dimethoxypropan-2- yloxy)-5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)nicotinate
ethyl 2-((1-methyl-1H- imidazol-2- yl)methoxy)-5- (4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2- yl)nicotinate
ethyl 2-(2- (methylsulfonyl)ethoxy)- 5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)nicotinate
ethyl 2-(3- (methylsulfonyl)prop- poxy)-5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)nicotinate
To a suspension of cesium carbonate (18.2 mmol, 5.9 g) in dry methanol (20 mL), 5-bromo-2-hydroxypyridine-3-carboxylic acid (9.2 mmol, 2 g) and iodomethane (27.3 mmol, 3.87 g) were added and heated to 80° C. for 3 h in a sealed tube. The mixture was diluted with methanol and filtered through a celite bed. The filtrate was concentrated and purified by silica gel (60-120 mesh) (product eluted with 2% Methanol in Chloroform) to yield 1.6 g of the title compound.
methyl 5-bromo-1- methyl-2-oxo-1,2- dihydropyridine-3- carboxylate
Methyl 5-bromo-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylate (Intermediate 322, 2 mmol, 0.5 g), bis(pinacolato)diboron (2.42 mmol, 0.619 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.3 mmol, 0.244 g) and potassium acetate (6 mmol, 0.59 g) were suspended in dry dioxane (10 mL) and degassed with nitrogen for 10 min. The reaction was then heated to 100° C. for 1 h. The reaction mixture was diluted with DCM and filtered through a diatomaceous earth bed and concentrated. Then the crude mass was taken to the next step without purification. HPLC-MS analysis indicated the presence of a mixture of Boronic acid (23%) and boronate (42%).
methyl 1-methyl-2- oxo-5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2-yl)- 1,2-dihydropyridine- 3-carboxylate
The compound in the below table was prepared using the general method described above for Intermediate 323 and the starting material (SM) indicated.
ethyl 2-(2- acetamidoethoxy)- 5-(4,4,5,5- tetramethyl- 1,3,2- dioxaborolan-2- yl)nicotinate
A solution of 5-bromo-2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 227, 2.3 mmol, 750 mg), methyl2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (2 3 mmol, 680 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.46 mmol, 340 mg) and sodium carbonate (2.3 mmol, 250 mg) in acetonitrile (10 mL)/water (10 mL) was degassed and heated to 90° C. for 20 min under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 15% ethyl acetate/hexanes to yield 300 mg of the title compound.
1H NMR
methyl 5-{2-chloro-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylate
To a suspension of 5-bromo-2,4-dichloropyrimidine (44 mmol, 10 g) in acetonitrile (100 mL), was added K2CO3 (44 mmol, 6.1 g) and the reaction mixture was cooled to −5 to −10° C. 5-methyl-3-(trifluoromethyl)-1H-pyrazole (44 mmol, 6.6 g) was dissolved in 100 mL of acetonitrile and added dropwise. After the addition, the reaction mixture was slowly warmed to RT and stirred overnight. The reaction mixture was filtered through a celite bed and acetonitrile was removed in vacuo. The crude mass was purified by silica gel column chromatography (60-120 mesh; product eluted with 1% EtOAc/hexanes) to yield 5 g of the product.
5-bromo-2-chloro- 4-[5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidine
A solution of 5-bromo-2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidine (Intermediate 326, 2.05 mmol, 700 mg), methyl2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (2.46 mmol, 725 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.4 mmol, 300 mg) and sodium carbonate (2.05 mmol, 210 mg) in acetonitrile (25 mL)/water (5 mL) was degassed and heated to 90° C. for 20 min under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 15-20% ethyl acetate/hexanes to yield 280 mg of the title compound.
1H NMR
methyl 5-{2-chloro-4-[5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylate
Ammonia gas was passed into a cooled THF solution (25 mL) of ethanesulfonyl chloride (19.4 mmol, 2.5 g) for 1 h. The reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through a bed of diatomaceous earth. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of the title compound as a white solid.
ethanesulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of propane-1-sulfonyl chloride (17.5 mmol, 2.5 g) for 1 h. The reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through a bed of diatomaceous earth. The filtrate was concentrated under reduced pressure and dried to yield the sulfonamide as a white solid.
propane-1-sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of propane-2-sulfonyl chloride (17.5 mmol, 2.5 g) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction was monitored by TLC, the reaction mixture was diluted with chloroform (20 mL), filtered through a celite bed, concentrated under reduced pressure & dried to get quantitative yield of the sulfonamide as a pale yellow thick mass.
propane-2- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 3-chloropropane-1-sulfonyl chloride (14.2 mmol, 2.5 g) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed, concentrated under reduced pressure and dried to get quantitative yield of the desired sulfonamide as a white solid.
3-chloropropane-1- sulfonamide
The solution of 3-chloropropane-1-sulfonamide Intermediate 331 (1.58 mmol, 0.250 g), Morpholine (1.58 mmol, 0.138 g), Na2CO3 (3.16 mmol, 0.335 g) and NaI (0.158 mmol, 24 mg) in dry Dioxane (5 mL) was heated to 75° C., overnight, in a sealed tube. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed and the filtrate was concentrated under reduced pressure and dried to get the desired compound as a colorless mass (0.21 g).
3-(morpholin-4- yl)propane-1- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 4-bromo-2-methylbenzenesulfonyl chloride (9.27 mmol, 2.5 g) for 1 h. Then the reaction mixture was sealed and stirred overnight at rt. After completion of reaction, as monitored by TLC, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed and the filtrate was concentrated under reduced pressure and dried to get quantitative yield of the desired sulfonamide as a white solid.
4-bromo-2- methylbenzenesulfon amide
A suspension of 4-bromo-2-methylbenzenesulfonamide (Intermediate 333, 9.6 mmol, 2.4 g), periodic acid (76.8 mmol, 17.5 g), Chromium oxide (4.8 mmol, 0.047 g) in dry acetonitrile (25 mL) was heated to reflux for 3 h. Isopropyl alcohol (5 mL) was added slowly and the reaction mixture was heated to reflux for another 10 min. Then the reaction mixture was cooled to rt and it was filtered and washed with acetone (10 mL×3). The filtrate was concentrated and triturated with 10 mL of 2 N H2SO4 and filtered to get 1.5 g of the title compound as an off-white solid.
5-bromo-1,2- benzothiazol-3(2H)- one 1,1-dioxide
5-bromo-1,2-benzothiazol-3(2H)-one 1,1-dioxide (Intermediate 334, 0.954 mmol, 0.25 g), bis(pinacolato)diboron (2.862 mmol, 0.726 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.0954 mmol, 0.077 g) and potassium acetate (2.862 mmol, 0.28 g) were suspended in dry DMSO (5 mL) and degassed with nitrogen for 10 min. The reaction was then subjected to microwave condition at 100° C. for 30 min. The reaction mixture was concentrated under vacuum. The residue obtained was washed with hexane (5 mL), decanted and dried to give the product. Taken to the next step without purification.
(1,1-dioxo-3-oxo- 2,3-dihydro-1,2- benzothiazol-5- yl)boronic acid
Ammonia gas was passed into a cooled THF solution (2 mL) of 2-(acetylamino)-4-methyl-1,3-thiazole-5-sulfonyl chloride (0.39 mmol, 0.1 g) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through a celite bed. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of an off-white solid.
N-(4-methyl-5- sulfamoyl-1,3- thiazol-2- yl)acetamide
Ammonia gas was passed into a cooled THF solution (2 mL) of 2,2,2-trifluoroethanesulfonyl chloride (5.48 mmol, 1 g) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2 h. Completion of reaction was monitored by TLC. The reaction mixture was diluted with dichloromethane (50 mL) and filtered through celite bed and the filtrate was concentrated under reduced pressure and dried to get 800 mg of the title compound as a white solid.
2,2,2- trifluoroethanesulfonamide
Ammonia gas was passed into a cooled THF solution (2 mL) of 3,5-dimethyl-1,2-oxazole-4-sulfonyl chloride (0.76 mmol, 150 mg) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2-3 h. The reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed and the filtrate was concentrated under reduced pressure and dried to get 120 mg of the title compound as a white solid.
3,5-dimethyl-1,2- oxazole-4- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 2,4-dimethyl-1,3-thiazole-5-sulfonyl chloride (0.47 mmol, 100 mg) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2 h. The reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed and the filtrate was concentrated under reduced pressure and dried to get 90 mg of the desired sulfonamide as a white solid.
2,4-dimethyl-1,3- thiazol-5- sulfonamide
Ammonia gas was passed into a cooled THF solution (2 mL) of (methylsulfonyl)methanesulfonyl chloride (1.1 mmol, 200 mg) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2 h. After completion of reaction, as monitored by TLC, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed and the filtrate was concentrated under reduced pressure and dried to get 65 mg of white solid.
1- (methylsulfonyl)- methanesulfonamide
To a solution of 1-methyl-1H-imidazole-4-sulfonyl chloride (4.4 mmol, 0.8 g) in dry CH2Cl2 (10 mL), was added 4-methoxybenzylamine (3.5 mmol, 0.49 g) and Et3N (1.33 mmol, 1.34 g) and left to stir overnight at RT. The reaction mixture was diluted with dichloromethane (20 mL) and water. The organic layer was separated, dried over Na2SO4 and concentrated. The solid that was obtained was further recrystallised from CHCl3 and petroleum ether to get 500 mg of the desired protected sulfonamide.
N-(4- methoxybenzyl)-1- methyl-1H- imidazole-4- sulfonamide
To a cooled solution of N-(4-methoxybenzyl)-1-methyl-1H-imidazole-4-sulfonamide (Intermediate 341, 1.06 mmol, 0.3 g), was added TFA (15 mL) and the reaction mixture was stirred at 0° C. for 1 hour. The mixture was concentrated and methanol was added to the residue and further concentrated to get 150 mg of the desired sulfonamide.
1-methyl-1H- imidazole-4- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 2,5-dihydrothiophene-3-sulfonyl chloride 1,1-dioxide (0.93 mmol, 200 mg) for around 20 min. Then the reaction mixture was sealed and stirred at RT for 2-3 h. The reaction mixture was diluted with ethyl acetate (20 mL) and filtered. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of the desired sulfonamide as a white solid.
2,5- dihydrothiophene-3- sulfonamide 1,1- dioxide
To a solution of 6-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-sulfonyl chloride (2.23 mmol, 500 mg) in dry CH2Cl2 (10 mL), was added 4-methoxybenzylamine (1.78 mmol, 244 mg) and Et3N (11.6 mmol, 1.13 g) and left to stir overnight at RT. The reaction mixture was diluted with dichloromethane (20 mL) and water. The organic layer was separated and the precipitate formed in aqueous layer was filtered and dried to get 350 mg of the product.
N-(4-methoxybenzyl)- 6-methyl-2,4-dioxo- 1,2,3,4- tetrahydropyrimidine- 5-sulfonamide
To a cooled solution of N-(4-methoxybenzyl)-6-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-sulfonamide (Intermediate 344, 1.07 mmol, 350 mg), was added TFA (10 mL) and the reaction mixture was stirred at rt for 6 h. The mixture was concentrated and methanol was added to the residue and further concentrated to get 200 mg of the desired sulfonamide.
6-methyl-2,4-dioxo- 1,2,3,4-tetrahydro- pyrimidin-5- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 1,3,5-trimethyl-1H pyrazole-4-sulfonyl chloride (0.96 mmol, 0.2 g) for around 1 h. Then the reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (15 mL) and filtered through celite bed. The filtrate was concentrated under reduced pressure and dried to get the title compound as a white solid (149 mg).
1,3,5-trimethyl-1H- pyrazol-4- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 3-methyl-2-oxo-2,3-dihydro-1,3-benzoxazole-6-sulfonyl chloride (0.5 mmol, 0.125 g) for 1 h and sealed. Then the reaction mixture was stirred at RT for 2-3 h. The reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of the title compound as an off-white solid.
3-methyl-2-oxo-2,3- dihydro-1,3- benzoxazole-6- sulfonamide
Ammonia gas was passed into a cooled solution (25 mL) of 3-acetylbenzenesulfonyl chloride (2.2 mmol, 500 mg) in dry 1,4-dioxane(15 mL) for 20 min and sealed. Then the reaction mixture was stirred at RT for 2 h. It was then diluted with ethyl acetate (20 mL) and filtered. The filtrate was concentrated under reduced pressure and dried to get the desired sulfonamide as a white solid in quantitative yield.
3-acetylbenzene- sulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 1-methyl-3-(trifluoromethyl)-1H-pyrazole-4-sulfonyl chloride (0.5 mmol, 0.125 g) for 1 h. Then the reaction mixture was sealed and stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of the title compound as a white solid.
1-methyl-3- (trifluoromethyl)-1H- pyrazole-4- sulfonamide
To a cooled solution of 4-methoxybenzylamine (4.24 mmol, 0.581 g) and Et3N (0.99 mL, 7.07 mmol) in dry dichloromethane, was added 4-┌(acetylamino)methyl┐benzenesulfonyl chloride (2.83 mmol, 0.7 g) and the reaction mixture was stirred overnight at RT. The reaction mixture was diluted with chloroform (20 mL) and the organic layer was washed with 10% citric acid solution (50 mL), 10% sodium bicarbonate solution (50 mL) and brine (25 mL). The organic layer was dried over sodium sulfate and concentrated under reduced pressure and dried to get 0.2 g of the protected sulfonamide as an off-white solid.
N-{4-[(4- methoxybenzyl)sul- famoyl]benzyl}- acetamide
To a cooled solution of N-{4-[(4-methoxybenzyl)sulfamoyl]benzyl}acetamide (PE-66-14-I, 0.56 mmol, 195 mg), was added TFA (10 mL) and the reaction mixture was stirred overnight at rt. The mixture was concentrated and methanol was added to the residue and further concentrated to get 200 mg of the desired sulfonamide as a pale brown solid which was taken to the next step without further purification.
N-(4- Sulfamoylbenzyl) acetamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 1,3-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-sulfonyl chloride (0.53 mmol, 0.125 g) for 1 h and sealed. Then the reaction mixture was stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of the title compound as a white solid.
1,3-Dimethyl-2,4- dioxo-1,2,3,4- tetrahydropyrimidine- 5-sulfonamide
Ammonia gas was passed into a cooled solution (25 mL) of 2-(2,5-dioxopyrrolidin-1-yl)ethanesulfonyl chloride (1.77 mmol, 400 mg) in dry 1,4-dioxane (10 mL) for 20 min and sealed. Then the reaction mixture was stirred at RT for 2 h. It was then diluted with ethyl acetate (20 mL) and filtered. The filtrate was concentrated under reduced pressure and dried to get 150 mg of the desired sulfonamide as a white solid.
2-(2,5-dioxopyrrolidin- 1- yl)ethanesulfonamide
Ammonia gas was passed into a cooled THF solution (25 mL) of 1H-pyrazole-4-sulfonyl chloride (0.75 mmol, 0.125 g) for 1 h and sealed. Then the reaction mixture was stirred at RT for 2-3 h. After completion of reaction, the reaction mixture was diluted with chloroform (20 mL) and filtered through celite bed. The filtrate was concentrated under reduced pressure and dried to get quantitative yield of the title compound as a white solid.
1H-pyrazole-4- sulfonamide
To a solution of 2-hydroxypyridine-3-carboxylic acid (35.94 mmol, 5 g) in dry DMF cooled with an ice-water bath, a solution of bromine (57.51 mmol, 3 mL, 9.19 g in cooled DMF) was added dropwise at 0° C. over 1 h. The reaction mixture was stirred at rt for 3 h and then quenched with ice-water. The resulting yellow solid was filtered, washed with water and dried under vacuum to get 6 g of the title compound.
5-Bromo-2- hydroxypyridine- 3-carboxylic acid
A solution of 5-bromo-2-hydroxypyridine-3-carboxylic acid (Intermediate 355, 26.83 mmol, 5.85 g) in POCl3 (14.63 mL, 2.5 v/w) was heated to reflux for 12 h. It was cooled to RT and POCl3 was removed in vacuo. Then ice water was added to the reaction mixture and extracted with EtOAc. The EtOAc layer was concentrated to get a yellow solid. The solid obtained was washed with chilled CHCl3 to yield the title compound (2.86 g).
5-Bromo-2- chloropyridine-3- carboxylic acid
To a solution of 5-bromo-2-chloropyridine-3-carboxylic acid (Intermediate 356, 10.57 mmol, 2.5 g) in dioxane was added 21% aqueous solution of NaSMe (8.8 mL, 26.43 mmol, 1.85 g) and the mixture was heated in a sealed tube at 110° C. for 2 h. After completion of the reaction, the crude mass was dissolved in water and acidified with 10% citric acid solution and the solid obtained was filtered and dried to yield the product (2 g).
5-Bromo-2- (methylsulfanyl)- pyridine-3- carboxylic acid
To a suspension of 5-bromo-2-(methylsulfanyl)pyridine-3-carboxylic acid (Intermediate 357, 7.66 mmol, 1.9 g) in MeOH (20 ml) at 0° C., was slowly added thionyl chloride (15.32 mmol, 1.82 g). After the addition was complete, the reaction mixture was refluxed for 3 h. The solvent was concentrated in vacuo and the crude mixture was taken in EtOAc (30 mL), washed with aq. NaHCO3 solution, water and brine, dried over Na2SO4, filtered and concentrated to obtain 1.6 g of the title compound.
Methyl 5-bromo-2- (methylsulfanyl)- pyridine-3- carboxylate
A suspension of methyl 5-bromo-2-(methylsulfanyl)pyridine-3-carboxylate (Intermediate 358, 5.7 mmol, 1.5 g), bis(pinacolato)diboron (6.2 mmol, 1.59 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with dichloromethane (0.57 mmol, 0.467 g) and potassium acetate (17.17 mmol, 1.685 g) was taken in dioxane (5 mL) and degassed for 10 min. Then the reaction mixture was heated to 100° C. for 1 h. The reaction mixture was passed through a column and the product was eluted at 5% EtOAc in hexanes. The residue obtained upon evaporation of the product containing fractions was then triturated with petroleum ether to get 1.3 g of the title compound. LCMS analysis indicated the presence of a mixture of boronic acid (86%) and boronate (12%).
Methyl 2- (methylsulfanyl)-5- (4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2- yl)pyridine-3- carboxylate
To a suspension of cesium carbonate (12.3 mmol, 4 g) in dry ethanol (20 mL), 5-bromo-2-hydroxypyridine-3-carboxylic acid (9.2 mmol, 2 g) and iodoethane (24.3 mmol, 3.8 g) were added and heated to 80° C. for 3 h in a sealed tube. The mixture was diluted with methanol and filtered through a celite bed. The filtrate was concentrated to yield 2.2 g of the title compound.
ethyl 5-bromo-1- ethyl-2-oxo-1,2- dihydropyridine-3- carboxylate
Ethyl 5-bromo-1-ethyl-2-oxo-1,2-dihydropyridine-3-carboxylate (Intermediate 360, 1.82 mmol, 0.5 g), bis(pinacolato)diboron (2.1 mmol, 0.56 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (0.27 mmol, 0.22 g) and potassium acetate (5.4 mmol, 0.53 g) were suspended in dry dioxane (10 mL) and degassed with nitrogen for 10 min. The reaction was then heated to 100° C. for 1 h. The reaction mixture was diluted with DCM and filtered through a celite bed and concentrated to give the crude title compound which was used in the next step without further purification. HPLC-MS analysis indicated the presence of a mixture of boronic acid (39%) and boronate (35%).
Ethyl 1-ethyl-2-oxo- 5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2-yl)- 1,2-dihydropyridine- 3-carboxylate
5-Bromo-2-methoxynicotinonitrile (0.5 g, 2.35 mmol), 4,4,4′,4′,5,5,5′,5′-octamethyl-2,2′-bi(1,3,2-dioxaborolane) (0.834 g, 3.29 mmol), 1,1′-bis(diphenylphosphino)ferrocene-palladium dichloride-dichloromethane adduct (0.575 g, 0.70 mmol), and potassium acetate (0.691 g, 7.04 mmol) were suspended in 1,4-dioxane (20 ml) and degassed with nitrogen for 10 min. The reaction was then heated at 90° C. for 2 h, diluted with dichloromethane and purified by flash chromatography (25 g silica column, 0-8% methanol in dichloromethane). Fractions were combined to obtain reddish-brown solid corresponding to title compound.
MS(ES): 260.99 (M+H) for C13H17BN2O3
1H-NMR (400 MHz, DMSO-d6): δ ppm 1.30 (s, 12H) 4.03 (s, 3H) 8.30 (d, J=1.70 Hz, 1H) 8.62 (d, J=1.70 Hz, 1H).
The title compound was prepared using the general method described above for Intermediate 65 using 5-bromo-2-chloro-4-(methylthio)pyrimidine and 3,5-dimethoxy-aniline.
5-bromo-N-(3,5- dimethoxy)phenyl]-4- (methylthio)pyrimidin-2- amine
5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine Intermediate 115 (300 mg, 0.69 mmol) and triisopropyl borate (0.319 mL, 1.37 mmol) were combined in anhydrous THF (3.00 mL) and anhydrous toluene (12 mL) to give a colorless solution under argon. The mixture was cooled to −78° C., then 2.5M BuLi in Hexanes (0.550 mL, 1.37 mmol) was added dropwise over 1 hour. After 30 minutes, 1 M HCl (20 ml) was added at −78° C., then the the ice bath was removed and the mixture was allowed to warm to RT. The mixture was concentrated followed by addition of water and ethyl acetate. The water layer was extracted with ethyl acetate. The combined organic layers were washed with brine (1×50 mL) then dried over MgSO4. The residue after filtration and evaporation was purified by silica gel chromatography using 0-10% MeOH in methylene chloride. The title compound was isolated as a white solid. (80 mg).
MS (Electrospray): 402 (MH+) C14H9BClF4N5O2
To a stirred suspension of 5-bromo-2-methoxynicotinic acid (1.15 g, 4.96 mmol) and oxalyl chloride (0.649 ml, 7.43 mmol) in methylene chloride (10 mL), under an atmosphere of nitrogen at ambient temperature, were added two drops of DMF. This mixture was allowed to stir for 2 hours. The solution was concentrated under vacuum; the residue was redissolved in methylene chloride (5 mL) and added dropwise to a stirred suspension of methanesulfonamide (0.471 g, 4.96 mmol) and pyridine (0.802 ml, 9.91 mmol) in methylene chloride (5 mL), under an atmosphere of nitrogen at ambient temperature. This mixture was stirred overnight, concentrated and purified by flash chromatography (silica gel, 0-6% methanol in methylene chloride) to yield the title compound (1.1 g). MS: ES+ 310 for C8H9BrN2O4S.
1H NMR (300 MHz, CHLOROFORM-d) δ ppm 3.41 (s, 3H) 4.16 (s, 3H) 8.43 (d, J=2.64 Hz, 1H) 8.58 (d, J=2.64 Hz, 1H) 10.05 (br. s., 1H)
Methyl5-bromo-2-hydroxynicotinate (0.9 g, 3.88 mmol), dimethyl sulfate (1.186 mL, 12.41 mmol), and triethylamine (1.730 mL, 12.41 mmol) were dissolved in MeOH (10.5 mL) and heated in a microwave reactor at 100° C. for 30 min. The reaction was diluted with DCM, washed with water, and the organic layer was evaporated and purified by flash chromatography (silica gel, 0-12% MeOH in DCM) to afford the desired product (847 mg). MS: ES+ 247 for C8H8BrNO3
1H NMR (300 MHz, DMSO-d6) d ppm 3.45 (s, 3H) 3.75 (s, 3H) 8.04 (d, J=3.01 Hz, 1H) 8.36 (d, J=2.83 Hz, 1H)
The compound in the table below was prepared using the procedure described above for Intermediate 366 using iodoethane as the alkylating agent, potassium carbonate as the base and ethanol as solvent.
ethyl 5-bromo-1-ethyl-2-oxo- 1,2-dihydropyridine-3- carboxylate
The intermediates in the table below were prepared using the procedure for Intermediate 134 and the specified starting material.
2-Methoxy-N- (methylsulfonyl)-5-(4,4,5,5- tetramethyl-1,3,2- dioxaborolan-2- yl)nicotinamide
methyl 1-methyl-2-oxo-5- (4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,2- dihydropyridine-3- carboxylate
ethyl 1-ethyl-2-oxo-5- (4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,2- dihydropyridine-3- carboxylate
The compounds in the table below were prepared using the procedure for Intermediate 65 and the specified starting materials.
5-Bromo-N-(3-fluoro-5- methoxyphenyl)-4- (methylthio)pyrimidin-2-amine
3-(5-bromo-4- (methylthio)pyrimidin-2- ylamino)-5-chlorobenzonitrile
The compounds in the table below were prepared using the procedure for Intermediate 69 and the specified starting material.
5-bromo-N-(3-fluoro-5- methoxyphenyl)-4- (methylsulfonyl)pyrimidin-2- amine
3-(5-bromo-4- (methylsulfonyl)pyrimidin-2- ylamino)-5-chlorobenzonitrile
The compounds in the table below were prepared using the procedure for Intermediate 112 and the specified starting materials.
5-bromo-N-(3-methoxy-5- (trifluoromethyl)phenyl)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-2-amine
5-bromo-N-(3-fluoro-5- methoxyphenyl)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-2-amine
5-bromo-N-(3-fluoro-5- methoxyphenyl)-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-2-amine
3-(5-bromo-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-2-ylamino)-5- chlorobenzonitrile
A solution of Example 5 (100 mg, 0.21 mmol) and hydrazine hydrate (0.015 mL, 0.32 mmol) in 1,4-dioxane (1 mL) was stirred and heated to 115 degrees for 60 minutes. Solvent was removed under reduced pressure, affording the title compound (83 mg).
MS: ES+ 459 for C21H24ClFN8O.
1H NMR (300 MHz, DMSO-d6) d ppm 1.70 (quin, J=6.59 Hz, 2H) 2.02 (s, 6H) 2.33 (t, J=6.50 Hz, 2H) 3.38-3.50 (m, 2H) 7.30 (t, J=9.14 Hz, 1H) 7.41 (t, J=4.99 Hz, 1H) 7.63 (ddd, J=9.14, 4.24, 2.64 Hz, 1H) 7.86 (s, 1H) 8.13 (t, J=2.07 Hz, 1H) 8.26 (dd, J=6.97, 2.64 Hz, 1H) 8.68 (d, J=2.07 Hz, 1H) 8.93 (d, J=1.88 Hz, 1H) 9.48 (s, 1H) 9.99 (br. s., 1H)
Intermediate 127 (120 mg, 0.35 mmol) was suspended in methanol (0.5 mL) and water (0.5 mL) and stirred under ambient conditions. To this mixture was added aqueous sodium hydroxide (50 wt %, 84 mg, 1.05 mmol). Upon warming to 50 degrees a small amount of dioxane was added to aid in solubility. After 90 minutes the mixture was removed from heating then water was added to precipitate a solid; this was collected and washed with water to give the title compound (87 mg). MS: ES+ 354 for C15H17ClFN5O2.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.81 (quin, J=6.50 Hz, 2H) 3.22 (s, 3H) 7.18 (br. s., 1H) 7.30 (t, J=9.14 Hz, 1H) 7.54-7.66 (m, 1H) 7.80 (br. s., 1H) 8.20 (dd, J=6.78, 2.45 Hz, 1H) 8.52 (s, 1H) 9.20 (t, J=5.37 Hz, 1H) 9.69 (s, 1H).
The following intermediates were prepared using the general method described above for Intermediate 72 using 5- bromo-2-[N-(3-chloro-4-fluorophenyl)]-4-(methyl sulfonyl)pyrimidin-2-amine (Intermediate 69) and the starting material (SM) indicated.
5-bromo-N2-(3- chloro-4- fluorophenyl)-N4- (tetrahydrofuran-3- yl)pyrimidin-2,4- diamine
(S)-5-bromo-N2-(3- chloro-4- fluorophenyl)-N4- (tetrahydrofuran-3- yl)pyrimidin-2,4- diamine
To 600 mg of 5-bromo-4-chloro-N-(3-chloro-4-fluorophenyl)pyrimidin-2-amine (Intermediate 63, 1.78 mmol) in 1,4-Dioxane (8 mL), was added triethylamine (0.27 mL, 1.96 mmol) and 2-hydroxymethylmorpholine (1.78 mmol, 209 mg) under inert atmosphere. The reaction mixture was stirred at room temperature for 2 days. The reaction mixture was diluted with ethyl acetate and MeOH and adsorbed on silica gel. The mixture was purified by column chromatography using 0-10% MeOH in DCM to obtain (4-(5-bromo-2-(3-chloro-4-fluorophenylamino)pyrimidin-4-yl)morpholin-2-yl)methanol (473 mg). MS(ES): 417 (M) and 419 (M+2) for C15H15BrClFN4O2.
1H NMR (300 MHz, DMSO-D6) δ ppm 2.71-2.94 (m, 1H) 2.94-3.14 (m, 1H) 3.33-3.76 (m, 4 H) 3.92 (d, J=11.11 Hz, 1H) 4.09 (d, J=12.81 Hz, 1H) 4.22 (d, J=13.00 Hz, 1H) 4.82 (t, J=5.27 Hz, 1H) 7.30 (t, J=9.14 Hz, 1H) 7.43-7.70 (m, 1H) 7.89-8.14 (m, 1H) 8.26 (s, 1H) 9.70 (s, 1H).
The following compound was prepared using the general method described for Intermediate 383 and the starting materials (SM) indicated.
5-bromo-N-(3-chloro- 4-fluorophenyl)-4-(5- ethyl-2- methylmorpholin)- pyrimidin-2-amine
The following compound was prepared using the general method described for Intermediate 131 and the starting material (SM) indicated.
Methyl 6-bromo- 1H-indole-2- carboxylate
1H NMR (300 MHz, DMSO-D6) δ ppm 3.87 (s, 3 H) 7.09-7.28 (m, 2 H) 7.49-7.80 (m, 2 H) 12.07 (s, 1 H)
To 1 g of methyl 6-bromo-1H-indole-2-carboxylate (Intermediate 385, 3.94 mmol) in THF (20 mL) was added di-t-Butyl dicarbonate (1.074 g, 4.92 mmol) and treated with 4-dimethylaminopyridine (48 mg, 0.39 mmol). The mixture was stirred at room temperature under nitrogen for 4 days. The mixture was concentrated at reduced pressure and the residue was adsorbed on silica gel and purified by column chromatography with 0-25% EtOAc in hexanes to afford 1-tert-butyl 2-methyl6-bromo-1H-indole-1,2-dicarboxylate (1.33 g).
1H NMR (300 MHz, DMSO-D6) δ ppm 1.55 (s, 9 H) 3.86 (s, 3H) 7.29 (s, 1H) 7.49 (dd, J=8.48, 1.70 Hz, 1H) 7.69 (d, J=8.48 Hz, 1H) 8.13 (s, 1H).
The following compound was prepared using the general method described above for Intermediate 386 using the starting material (SM) indicated.
1-tert-butyl 2-ethyl-5- bromo-1H-indole- 1,2-dicarboxylate
1H NMR (300 MHz, DMSO-D6) δ ppm 1.31 (t, J = 7.06 Hz, 3 H) 1.56 (s, 9 H) 4.32 (q, J = 7.16 Hz, 2 H) 7.23 (s, 1 H) 7.60 (dd, J = 8.85, 2.07 Hz, 1 H) 7.82-8.06 (m, 2 H)
The following compounds were prepared using the general method described above for Intermediate 133 using Intermediate 132 and the starting material (SM) indicated.
ethyl 1-(2- (dimethylamino)ethyl)- 6-iodo-4-oxo-1,4- dihydroquinoline-3- carboxylate
Ethyl 6-iodo-1-(2-(4- methylpiperazin-1- yl)ethyl)-4-oxo-1,4- dihydroquinoline-3- carboxylate
A solution of 3-bromo-5-(methylthio)pyridine (2.17 g, 10.63 mmol) in DCM (40 mL) was cooled to 0° C. The reaction was then treated with m-Chloroperbenzoic acid (4.89 g, 21.27 mmol) and allowed to stir at 0° C. for 30 min (reaction became a suspension after mcpba addition) before it was allowed to warm up to room temperature for 1 hr. The reaction mixture was diluted with EtOAc, basified with sodium carbonate, and the layers were separated. The organic layer was washed with brine and dried over MgSO4. The solvent was removed at reduced pressure and the residue was adsorbed on silica and purified by column chromatography with 50-100% EtOAc in hexanes to afford 3-bromo-5-(methylsulfonyl)pyridine (1.97 g). MS(ES): 236 (M) and 238 (M+2) for C6H6BrNO2S.
1H NMR (300 MHz, DMSO-D6) δ ppm 3.39 (s, 3H) 8.57 (t, J=2.07 Hz, 1H) 9.04 (d, J=1.88
Hz, 1H) 9.07 (d, J=2.07 Hz, 1H).
A solution of 3-bromobenzenethiol (0.788 mL, 6.66 mmol) in DMF (12 mL) was treated with tert-butyl2-bromoacetate (1.034 mL, 7.00 mmol) and potassium carbonate (1.842 g, 13.33 mmol). The reaction was stirred at room temperature under nitrogen overnight. The reaction was diluted with EtOAc/H2O and the layers were separated. The organic phase was washed with brine and dried over sodium sulfate. The solvent was removed at reduced pressure and the residue was adsorbed on silica and purified by column chromatography with 0-20% EtOAc in hexanes to afford tert-butyl2-(3-bromophenylthio)acetate (1.6 g).
1H NMR (300 MHz, DMSO-d6) δ ppm 1.35 (s, 9 H) 3.82 (s, 2H) 7.15-7.47 (m, 3H) 7.54 (t, J=1.79 Hz, 1H).
The following compound was prepared using the general method described above for Intermediate 390 using mcpba and the starting material (SM) indicated.
tert-butyl 2-(3- bromophenylsulfonyl)- acetate
1H NMR (300 MHz, CHLOROFORM-d) δ ppm 1.40 (s, 9 H) 4.05 (s, 2 H) 7.47 (t, J = 8..01 Hz, 1 H) 7.74-7.97 (m, 2 H) 8.10 (t, J = 1.79 Hz, 1 H)
3-Bromoaniline (0.759 mL, 6.98 mmol) was dissolved in THF (20 mL), treated with triethylamine (0.972 mL, 6.98 mmol), and cooled to 0° C. The solution was then treated with ethyl 2-chloro-2-oxoacetate (0.779 mL, 6.98 mmol) and allowed to slowly warm up to room temperature and stir overnight under nitrogen. The reaction was diluted with EtOAc/H2O and the layers were separated. The organic phase was washed with brine and dried over sodium sulfate. The solvent was removed at reduced pressure, the residue was adsorbed on silica, and purified by column chromatography with 0-60% EtOAc in hexanes to afford Ethyl2-(3-bromophenylamino)-2-oxoacetate (1.78 g).
MS(ES): 272 (M) and 274 (M+2) for C10H10BrNO3.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.32 (t, J=7.06 Hz, 3H) 4.31 (q, J=7.16 Hz, 2H) 7.19-7.44 (m, 2H) 7.74 (dt, J=6.45, 2.33 Hz, 1H) 7.90-8.17 (m, 1H) 10.92 (s, 1H)
A solution of 3-bromobenzenesulfonamide (400 mg, 1.69 mmol) in acetone (4.20 mL) was treated with a solution of potassium hydroxide (95 mg, 1.69 mmol) in water (0.6 mL). The reaction was stirred at room temperature for 15 min at which time the solvent was removed at reduced pressure. The residue was re-dissolved in DMF (4.20 mL), treated with ethyl isocyanate (0.266 mL, 3.39 mmol), and stirred overnight. The solvent was removed at reduced pressure and the residue was basified with 2 mL of 1 N NaOH, diluted with water, and then acidified with concentrated HCl. The solid formed was then filtered and dried to afford the desired product (350 mg).
1H NMR (300 MHz, DMSO-d6) δ ppm 0.95 (t, 3H) 2.81-3.13 (m, 2H) 6.61 (t, J=5.37 Hz, 1H) 7.58 (t, J=7.91 Hz, 1H) 7.90 (dt, J=8.15, 1.77 Hz, 2H) 8.03 (t, J=1.79 Hz, 1H) 10.73 (s, 1H)
5-bromopyridine-3-sulfonyl chloride hydrochloride (1 g, 3.41 mmol) and ethanamine hydrochloride (0.306 g, 3.75 mmol) were treated with pyridine (2.76 ml, 34.13 mmol) and stirred at room temperature under nitrogen for 2 hrs. The reaction mixture was then diluted with EtOAc, washed with water, and dried over sodium sulfate. The solvent was removed at reduced pressure, the residue was adsorbed on silica, and purified on column chromatography with 10-80% EtOAc in hexanes to afford 5-bromo-N-ethylpyridine-3-sulfonamide (466 mg).
MS(ES): 265 (M) and 267 (M+2) for C7H9BrN2O2S.
1H NMR (300 MHz, DMSO-d6) δ ppm 0.99 (t, J=7.16 Hz, 3H) 2.78-2.96 (m, 2H) 7.93 (br. s., 1H) 8.37 (t, J=2.07 Hz, 1H) 8.92 (d, J=1.88 Hz, 1H) 9.00 (d, J=2.07 Hz, 1H).
3-Bromobenzoic acid (1 g, 4.97 mmol), methanesulfonamide (0.521 g, 5.47 mmol), 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (1.144 g, 5.97 mmol), and 4-dimethylaminopyridine (0.304 g, 2.49 mmol) were dissolved in THF (10 mL) and stirred at room temperature overnight. The residue was diluted with EtOAc, washed with water and brine, and dried over sodium sulfate. The solvent was removed at reduced pressure, the residue was adsorbed on silica, and purified by column chromatography with 20-100% EtOAc in hexanes to afford 3-bromo-N-(methylsulfonyl)benzamide (350 mg).
1H NMR (300 MHz, CHLOROFORM-d) δ ppm 3.46 (s, 3H) 7.40 (t, J=7.91 Hz, 1H) 7.68-7.86 (m, 2H) 8.03 (t, J=1.70 Hz, 1H) 8.67 (br. s., 1H).
A suspension of methyl 5-bromo-2-hydroxynicotinate (1 g, 4.31 mmol), 4-(2-chloroethyl)morpholine hydrochloride (0.802 g, 4.31 mmol), and potassium carbonate (1.787 g, 12.93 mmol) in MeOH (20 mL) was refluxed overnight. The solvent was removed at reduced pressure and the residue was dissolved in H2O and neutralized with 1N HCl. The solid formed was filtered (unreacted starting hydroxynicotinate) and the desired product remained in the aqueous layer, which was then concentrated. The residue was re-dissolved in DCM/MeOH, adsorbed on silica, and purified by column chromatography with 0-20% MeOH in DCM to afford bromo-1-(2-morpholinoethyl)-2-oxo-1,2-dihydropyridine-3-carboxylic acid (750 mg)
1H NMR (300 MHz, DMSO-d6) δ ppm 2.31-2.47 (m, 4 H) 2.64 (t, J=6.12 Hz, 2H) 3.43-3.69 (m, 4 H) 4.18 (t, J=6.03 Hz, 2H) 8.36 (d, J=2.83 Hz, 1H) 8.50 (d, J=2.83 Hz, 1H) 14.30 (br. s., 1H)
A suspension of 5-bromo-1-(2-morpholinoethyl)-2-oxo-1,2-dihydropyridine-3-carboxylic acid (Intermediate 397, 750 mg, 2.26 mmol) in methanol (9162 μl, 226.47 mmol) was treated with sulfuric acid (483 μl, 9.06 mmol). The reaction was refluxed for 4 hrs at which time the solvent was removed at reduced pressure. The residue was diluted with EtOAc and carefully neutralized with a solution of sodium carbonate. The layers were then separated and the organic was washed with brine and dried over sodium sulfate. The solvent was removed at reduced pressure and the residue was adsorbed on silica and purified by column chromatography with 0-15% MeOH in DCM to yield methyl5-bromo-1-(2-morpholinoethyl)-2-oxo-1,2-dihydropyridine-3-carboxylate (664 mg).
1H NMR (300 MHz, DMSO-d6) δ ppm 2.33-2.46 (m, 4 H) 2.54 (t, J=6.22 Hz, 2H) 3.39-3.60 (m, 4 H) 3.74 (s, 3H) 4.02 (t, J=6.22 Hz, 2H) 8.05 (d, J=3.01 Hz, 1H) 8.26 (d, J=3.01 Hz, 1H)
A suspension of methyl5-bromo-2-chloronicotinate (0.5 g, 2.00 mmol) and 2-morpholinoethanamine (0.390 mL, 2.99 mmol) in EtOH (3 mL) was heated in a microwave reactor at 140° C. for 45 min. The mixture was concentrated at reduced pressure. The residue was then diluted with water, treated with sodium bicarbonate, and extracted with EtOAc. The organic layer was washed with brine and dried over sodium sulfate. The solvent was removed at reduced pressure and the residue was adsorbed on silica and purified by column chromatography with 0-16% MeOH in DCM to afford methyl 5-bromo-2-(2-morpholinoethylamino)nicotinate (582 mg).
1H NMR (300 MHz, DMSO-d6) δ ppm 2.29-2.46 (m, 4 H) 2.51-2.60 (m, 2H) 3.43-3.67 (m, 6 H) 3.84 (s, 3H) 8.05-8.26 (m, 2H) 8.37 (d, J=2.45 Hz, 1H)
The following compound was prepared using the general method described above for Intermediate 399 using methyl5-bromo-2-chloronicotinate and the starting material (SM) indicated.
Methyl 5-bromo-2-(2- methoxyethylamino)- nicotinate
The following compounds were prepared using the general method described above for Intermediate 367 using methyl5-bromo-2-hydroxynicotinate and the starting material (SM) indicated.
Ethyl 5-bromo-1-(2- methoxyethyl)-2-oxo- 1,2-dihydropyridine- 3-carboxylate
Ethyl 5-bromo-1-(2- hydroxyethyl)-2-oxo- 1,2-dihydropyridine- 3-carboxylate
Methyl 5-bromo-1- (2-(4- isopropylpiperazin-1- yl)ethyl)-2-oxo-1,2- dihydropyridine-3- carboxylate
The following compound was prepared using the general method described above for Intermediate 366 using methyl5-bromo-2-hydroxynicotinate and the starting material (SM) indicated.
Methyl 5-bromo-1-(2- (methylsulfonyl)ethyl)-2-oxo-1,2- dihydropyridine-3-carboxylate
Methyl5-bromo-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylate (Intermediate 366, 2.00 g, 8.13 mmol) was dissolved in MeOH (40 mL) and treated with sodium hydroxide (16.26 mL, 16.26 mmol). The reaction was stirred at room temperature for 2 hrs. The reaction was neutralized with 1 N HCl and the solvent was removed at reduced pressure. The residue was suspended in water and filtered to afford 5-bromo-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylic acid (1.77 g).
MS (ES): (M) 232 and 234 (M+2) for C7H6BrNO3.
1H NMR (300 MHz, DMSO-d6) δ ppm 3.62 (s, 3H) 8.35 (d, J=2.83 Hz, 1H) 8.61 (d, J=2.83 Hz, 1H) 14.38 (s, 1H)
The following compounds were prepared using the general method described for Intermediate 365 using the starting materials (SM) indicated.
5-Bromo-N-(ethylsulfonyl)-2- methoxynicotinamide
5-Bromo-1-methyl-N-(methylsulfonyl)-2- oxo-1,2-dihydropyridine-3- carboxamide
The following compounds were prepared using the general method described above for Intermediate 134 using bis(pinacolato)diboron, 1,1′-bis(diphenylphosphino)ferrocene-palladium dichloride, potassium acetate and the starting material (SM) indicated.
1-tert-butyl 2-methyl 6-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)-1H-indole-1,2- dicarboxylate
1H NMR (300 MHz, DMSO- D6) δ ppm 1.31 (s, 12 H) 1.55 (s, 9 H) 3.87 (s, 3 H) 7.29 (s, 1 H) 7.58 (d, J = 7.91 Hz, 1 H) 7.71 (d, J = 7.91 Hz, 1 H) 8.38 (s, 1 H)
1-tert-butyl 2-ethyl 5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)-1H-indole-1,2- dicarboxylate
1H NMR (300 MHz, DMSO- D6) δ ppm 1.23-1.42 (m, 15 H) 1.56 (s, 9 H) 4.32 (q, J = 7.16 Hz, 2 H) 7.32 (s, 1 H) 7.74 (dd, J = 8.38, 1.04 Hz, 1 H) 7.96 (d, J = 8.48 Hz, 1 H) 8.07 (s, 1 H)
3-(Methylsulfonyl)-5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)pyridine
1H NMR (300 MHz, DMSO- D6) δ 1.32 (s, 12 H) 3.34 (s, 3 H) 8.30-8.50 (m, 1 H) 9.01 (d, J = 1.51 Hz, 1 H) 9.15 (d, J = 2.45 Hz, 1 H)
Methyl 2-methoxy-5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)nicotinate
1H NMR (300 MHz, DMSO- D6) δ 1.29 (s, 12 H) 3.80 (s, 3 H) 3.95 (s, 3 H) 8.29 (d, J = 1.88 Hz, 1 H) 8.54 (d, J = 2.07 Hz, 1 H)
N,N-diethyl-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine-3- sulfonamide
1H NMR (300 MHz, DMSO- d6) δ ppm 1.06 (t, J = 7.16 Hz, 6 H) 1.33 (s, 12 H) 3.20 (q, J = 7.03 Hz, 4 H) 7.94 (s, 1 H) 8.22 (s, 1 H) 8.96 (s, 1 H)
4-(5-(4,4,5,5-Tetramethyl-1,3,2- dioxaborolan-2-yl)pyridin-3- ylsulfonyl)morpholine
1H NMR (300 MHz, DMSO- d6) δ ppm 1.33 (s, 12 H) 2.81- 3.08 (m, 4 H) 3.60-3.77 (m, 4 H) 7.94 (s, 1 H) 8.16 (s, 1 H) 9.03 (s, 1 H)
Ethyl 1-(2-(dimethylamino)ethyl)- 4-oxo-6-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,4-dihydroquinoline-3- carboxylate
1H NMR (300 MHz, DMSO- d6) δ 1.21-1.35 (m, 15 H) 2.20 (s, 6 H) 2.54-2.68 (m, 2 H) 4.23 (q, J = 6.97 Hz, 2 H) 4.38-4.59 (m, 2 H) 7.79 (d, J = 8.85 Hz, 1 H) 7.90- 8.00 (m, 1 H) 8.53-8.65 (m, 2 H)
2-(Methylsulfonyl)-1-(5-(4,4,5,5-tetramehtyl- 1,3,2-dioxaborolan-2-yl)pyridin-3- yl)ethanone
1H NMR (300 MHz, DMSO- d6) δ ppm 1.34 (s, 12 H) 3.14 (s, 3 H) 5.22 (br. s., 2 H) 8.49 (br. s., 1 H) 8.98 (br. s., 1 H) 9.28 (br. s., 1 H)
Ethyl 1-(2-(4-methylpiperazin-1- yl)ethyl)-4-oxo-6-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)-1,4- dihydroquinoline-3-carboxylate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.22-1.40 (m, 15 H) 2.02-2.47 (m, 11 H) 2.56- 2.76 (m, 2 H) 4.12-4.33 (m, 2 H) 4.32-4.61 (m, 2 H) 7.71-8.71 (m, 4 H)
Methyl 3-oxo-3-(5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)pyridin-3- yl)propanoate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.33 (s, 12 H) 3.65 (s, 3 H) 4.33 (s, 2 H) 8.42 (s, 1 H) 8.98 (br. s., 1 H) 9.23 (br. s., 1 H)
Ethyl 2-oxo-2-(3-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)phenylamino)acetate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.23-1.42 (m, 15 H) 4.31 (q, J = 7.10 Hz, 2 H) 7.25-7.48 (m, 2 H) 7.76- 7.87 (m, 1 H) 7.91 (s, 1 H) 10.73 (s, 1 H)
N-(ethylcarbamoyl)-3-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)benzenesulfonamide
Methyl 2-amino-5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)nicotinate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.28 (s, 12 H) 3.83 (s, 3 H) 7.50 (s, 2 H) 8.28 (d, J = 1.88 Hz, 1 H) 8.38 (d, J = 2.07 Hz, 1 H)
N-ethyl-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)pyridine-3- sulfonamide
1H NMR (300 MHz, DMSO- d6) δ ppm 0.98 (t, 3 H) 1.21- 1.45 (m, 12 H) 2.66-2.90 (m, 2 H) 7.84 (t, J = 5.46 Hz, 1 H) 8.23-8.40 (m, 1 H) 8.94 (d, J = 1.13 Hz, 1 H) 9.01 (d, J = 2.26 Hz, 1 H)
Methyl 2-methoxy-5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)benzoate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.29 (s, 12 H) 3.78 (s, 3 H) 3.85 (s, 3 H) 7.16 (d J = 8.48 Hz, 1 H) 7.81 (dd, J = 8.38, 1.98 Hz, 1 H) 7.96 (d, J = 1.70 Hz, 1 H)
N-(methylsulfonyl)-3-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)benzamide
1H NMR (300 MHz, CHLOROFORM-d) δ ppm 1.38 (s, 12 H) 3.71 (s, 3 H) 7.53 (t, J = 7.63 Hz, 1 H) 7.98- 8.09 (m, 2 H) 8.16 (s, 1 H)
tert-butyl 2-(3-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)phenylsulfonyl)- acetate
1H NMR (300 MHz, CHLOROFORM-d) δ ppm 1.36 (d, J = 5.27 Hz, 21 H) 4.05 (s, 2 H) 7.58 (t, J = 7.63 Hz, 1 H) 7.97-8.16 (m, 2 H) 8.38 (s, 1 H)
Methyl 1-(2-morpholinoethyl)-2- oxo-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,2-dihydropyridine-3- carboxylate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.28 (s, 12 H) 2.33- 2.46 (m, 4 H) 2.46-2.60 (m, 2 H) 3.42-3.55 (m, 4 H) 3.74 (s, 3 H) 4.09 (t, J = 6.03 Hz, 2 H) 8.12 (d, J = 2.26 Hz, 1 H) 8.19 (d, J = 2.07 Hz, 1 H)
Methyl 2-(2-morpholinoethylamino)- 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)nicotinate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.21-1.36 (m, 12 H) 2.29-2.66 (m, 6 H) 3.42- 3.72 (m, 6 H) 3.84 (s, 3 H) 8.29 (d, J = 2.07 Hz, 1 H) 8.33- 8.54 (m, 2 H)
5-(4,4,5,5-Tetramethyl-1,3,2-dioxaborolan-2- yl)isoindoline-1,3-dione
1H NMR (300 MHz, DMSO- d6) δ ppm 1.33 (s, 12 H) 7.83 (d, J = 7.35 Hz, 1 H) 7.96 (s, 1 H) 8.08 (dd, J = 7.35, 0.75 Hz, 1 H) 11.46 (br. s., 1 H)
Methyl 2-(2- methoxyethylamino)-5- (4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2- yl)nicotinate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.28 (s, 12 H) 3.29 (s, 3 H) 3.51 (t, J = 5.46 Hz, 2 H) 3.66 (q, J = 5.46 Hz, 2 H) 3.83 (s, 3 H) 8.23-8.37 (m, 2 H) 8.45 (d, J = 1.88 Hz, 1 H)
Ethyl 1-(2-methoxyethyl)-2-oxo- 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)-1,2-dihydropyridine-3- carboxylate
1H NMR (300 MHz, DMSO- d6) δ 1.21-1.38 (m, 15 H) 3.23 (s, 3 H) 3.50-3.66 (m, 2 H) 4.09-4.28 (m, 4 H) 8.08 (d, J = 2.07 Hz, 1 H) 8.12 (d, J = 2.26 Hz, 1 H)
Ethyl 1-(2-hydroxyethyl)-2-oxo-5- (4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2- yl)-1,2-dihydropyridine-3- carboxylate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.21-1.35 (m, 15 H) 3.62 (q, J = 5.15 Hz, 2 H) 4.03 (t, J = 4.99 Hz, 2 H) 4.21 (q, J = 7.10 Hz, 2 H) 4.86 (t, J = 5.46 Hz, 1 H) 8.03-8.18 (m, 2 H)
N-(ethylsulfonyl)-2-methoxy-5-(4,4,5,5- tetramethyl-1,3,2-dioxaborolan-2- yl)nicotinamide
1H NMR (300 MHz, DMSO- d6) δ ppm 1.20-1.40 (m, 15 H) 3.45 (q, J = 7.16 Hz, 2H) 3.96 (s, 3 H) 8.05 (d, J = 1.88 Hz, 1 H) 8.51 (d, J = 1.88 Hz, 1 H) 11.75 (s, 1 H)
1-Methyl-N-(methylsulfonyl)-2- oxo-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,2-dihydropyridine-3- carboxamide
1H NMR (300 MHz, DMSO- d6) δ ppm 1.30 (s, 12 H) 3.36 (br. s., 3 H) 3.63 (s, 3 H) 8.31-8.61 (m, 2 H) 12.55 (br. s., 1 H)
Methyl 1-(2-(4-isopropylpiperazin-1- yl)ethyl)-2-oxo-5-(4,4,5,5-tetramethyl- 1,3,2-dioxaborolan-2-yl)-1,2- dihydropyridine-3-carboxylate
1H NMR (300 MHz, DMSO- d6) δ ppm 0.93 (d, J = 6.59 Hz, 6 H) 1.21-1.29 (m, 12 H) 1.79 (br. s., 2 H) 2.29- 2.44 (m, 8 H) 2.52-2.66 (m, 1 H) 3.73 (s, 3 H) 4.07 (t, J = 5.84 Hz, 2 H) 8.05-8.19 (m, 2 H)
Methyl 1-(2-(methylsulfonyl)ethyl)- 2-oxo-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,2-dihydropyridine-3- carboxylate
1H NMR (300 MHz, DMSO- d6) δ ppm 1.29 (s, 12 H) 3.07 (s, 3 H) 3.56 (t, J = 6.88 Hz, 2 H) 3.75 (s, 3 H) 4.38 (t, J = 6.97 Hz, 2 H) 8.14 (d, J = 2.07 Hz, 1 H) 8.32 (d, J = 2.07 Hz, 1 H)
Prepared using the general method described above for Intermediate 1 using 5-bromo-2,4-dichloro-pyrimidine and butan-2-amine. MS(ES): 265.8 (M+2) for C8H11BrClN3.
1H NMR (300 MHz, CHLOROFORM-D) δ ppm 0.93-1.03 (m, 3H), 1.26 (d, J=6.59 Hz, 3H), 1.55-1.70 (m, 2H), 4.06-4.36 (m, 1H), 5.30 (s, 1H), 8.12 (s, 1H).
Prepared using the general method described above for Intermediate 26 using Intermediate 435 and 3-chloro-4-fluoroaniline.
MS(ES): 375 (M+2) for C14H15BrClFN4.
1H NMR (300 MHz, CHLOROFORM-D) δ ppm 0.98-1.03 (m, 3H), 1.29 (d, J=6.59 Hz, 3H), 1.55-1.70 (m, 2H), 4.06-4.30 (m, 1H), 5.17 (m, 1H), 7.07 (m, 1H), 7.23 (m, 2H), 7.97-8.00 (m, 2H).
The following intermediates were prepared using the general method described above for Intermediate 112 using Intermediate 69 and the starting material (SM) indicated.
5-bromo-N-(3-chloro-4- fluorophenyl)-4-imidazol-1- ylpyrimidin-2-amine
5-bromo-N-(3-chloro-4- fluorophenyl)-4-pyrazol-1- ylpyrimidin-2-amine
The following intermediates were prepared using the general method described above for Intermediate 65 using 5-bromo-2-chloro-4-(methylthio)pyrimidine and the starting material (SM) indicated.
5-bromo-N-(4-fluoro-3- methylsulfonyl-phenyl)-4- methylsulfanyl-pyrimidin-2-amine
3-(5-bromo-4-(methylthio)- pyrimidin-2-ylamino)-5- fluorobenzonitrile
3-(5-bromo-4-(methylthio)- pyrimidin-2-ylamino)-5- chlorobenzonitrile
The following intermediates were prepared using the general method described above for Intermediate 69 using m-CPBA and the starting material (SM) indicated.
5-bromo-N-(4-fluoro-3- (methylsulfonyl)-phenyl)-4- (methylsulfonyl)-pyrimidin-2-amine
3-(5-bromo-4-(methylsulfonyl)- pyrimidin-2-ylamino)-5- fluorobenzonitrile
3-(5-bromo-4-(methylsulfonyl)- pyrimidin-2-ylamino)-5- chlorobenzonitrile
The following intermediates were prepared using the general method described above for Intermediate 112 using the starting materials (SM) indicated.
5-bromo-N-(4-fluoro-3- (methylsufonyl)-phenyl)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-2-amine
3-(5-bromo-4-(5-methyl-3- (trifluoromthyl)-1H-pyrazol-1- yl)pyrimidin-2-ylamino)-5- fluorobenzonitrile
3-(5-bromo-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-2-ylamino)-5- chlorobenzonitrile
5-bromo-N-(3,5-dimethoxyphenyl)-4-(methylthio)pyrimidin-2-amine Intermediate 363 (1 g, 2.81 mmol), hydrazine anhydrous (12 ml, 382.34 mmol) and dioxane (4 mL) were combined to give a white suspension. The reaction mixture was heat at 100° C. for 2 hours. The reaction mixture was cooled over an ice bath and 60 ml of water was slowly added. The precipitated solid was filtered and washed with water to give the crude title compound (462 mg), used without further purification in the next step.
MS (Electrospray): 341.18 (MH+) for C12H14BrN5O2
5-bromo-N-(3-chloro-4-fluorophenyl)-4-hydrazinylpyrimidin-2-amine (487 mg, 1.43 mmol), 1,1-difluoropentane-2,4-dione (214 mg, 1.57 mmol), acetic acid (0.082 mL, 1.43 mmol) and butan-1-ol (4 mL) were combined to give a yellow suspension. The mixture was heated at 150° C. for one hour. The resulting mixture of two product isomers was separated using flash chromatography, silica gel, 5-45% ethyl acetate in hexanes.
Intermediate 449 was isolated as a solid (210 mg).
Intermediate 450 was isolated as a solid (102 mg).
MS:ES+ 440 for C17H16BrF2N5O2
These materials gave the same mass spectral results and were taken onto the next step without further characterization. The assigned regioisomeric identities of these intermediates were based on NMR analysis of the products obtained in the next reactions.
4-morpholinopyridin-2-amine (prepared according to literature procedure: Bioorganic & Medicinal Chemistry Letters, 16(4), 839-844, 2006) (1.082 g, 6.04 mmol), di-t-butyl-dicarbonate (1.542 mL, 6.64 mmol), and TEA (1.010 mL, 7.24 mmol) were combined in Dioxane (20 mL) to give a colorless solution. DMAP (0.738 g, 6.04 mmol) was added and the mixture allowed to stir at RT for 2 hours, then heated to 70° C. for 1 hour. An additional amount of di-t-butyl-dicarbonate (2 g, 9.17 mmol) was added and the mixture was heated at 70° C. overnight. The reaction mixture was concentrated and diluted with methylene chloride and water. The layers were separated and the organic layer was washed with water, dried over Na2SO4 then concentrated. The resulting residue was triturated with diethyl ether, filtered and further washed with diethyl ether to give the pure title compound. (1.654 g).
MS (Electrospray): 380.45 (MH+) for C19H29N3O5
tert-butyl N-R2-methylpropan-2-yl)oxycarbonyl]-N-(4-morpholin-4-ylpyridin-2-yl)carbamate Intermediate 451 (51 mg, 0.29 mmol) was dissolved in DMF (20 mL). N-bromosuccinimide (51.6 mg, 0.29 mmol) was added and the mixture was heated to 85° C. for 1 hour. The mixture was concentrated and purified by flash chromatography (silica gel column, 40 g, eluted with 0-40% ethyl acetate in hexanes) to give the title compound. (95 mg). MS (Electrospray): 459.35 (MH+) for C19H28BrN3O5
tert-butyl N-(5-bromo-4-morpholin-4-ylpyridin-2-yl)-N-[2-methylpropan-2-yl)oxycarbonyl]carbamate Intermediate 452 (1.632 g, 3.56 mmol) was dissolved in anhydrous MeOH (10 ml) and HCl 4M in Dioxane (2.67 ml, 10.68 mmol) was added. The mixture was allowed to stir at rt overnight, then heat at 50° C. for 7 hours. The reaction mixture was concentrated to give the crude title compound (926 mg) which was used in the next step without further purification. MS (Electrospray): 259.12 (MH+) for C9H12BrN3O
5-bromo-4-morpholinopyridin-2-amine Intermediate 453 (320 mg, 0.97 mmol), 3-chloro-4-fluorophenylboronic acid (337 mg, 1.93 mmol), and 5-bromo-4-morpholinopyridin-2-amine (320 mg, 0.97 mmol) were combined with methylene chloride (5 ml) to give a yellow solution. Copper(II)acetate (176 mg, 0.97 mmol) was added followed by anhydrous powdered 3 angstrom molecular sieves (200 mg). The mixture was allowed to stir at rt overnight. Filtration, evaporation and purification by flash chromatography (0-100% ethyl acetate in hexanes) afforded the title compound (82 mg). MS (Electrospray): 387.65 (MH+) for C15H14BrClFN3O
methyl 5-bromo-2-chloronicotinate (500 mg, 2.00 mmol) and 2-methoxyethanol (456 mg, 5.99 mmol) were combined in tert-butanol (20 mL) to give a yellow solution. Sodium 2-methylpropan-2-olate (576 mg, 5.99 mmol) was added. The mixture was heated at 90° C. for 1 hour then concentrated. 1 N HCl was added to the residue followed by extraction with ethyl acetate. The organic layer was washed with water then brine, dried with MgSO4 and concentrated to give the title compound (454 mg). MS (Electrospray): 277.08 (MH+) for C9H10BrNO4
The compounds in the table below were prepared using this procedure and the specified starting materials.
5-bromo-2-(2-hydroxyethoxy)nico- tinic acid
5-bromo-2-(2-morpholinoethoxy)nico- tinic acid
5-bromo-2-(2,2,2-trifluoroethoxy)nico- tinic acid
5-bromo-6-methoxynicotinic acid
5-bromo-2-(2-methoxyethoxy)nicotinic acid Intermediate 455 (454 mg, 1.64 mmol) was dissolved in anhydrous methanol (20 mL) and H2SO4 (0.088 mL, 1.64 mmol) was added to give a brown solution. The mixture was stirred overnight at room temperature. An additional amount of H2SO4 (0.088 mL, 1.64 mmol) was added and the mixture was heated at 60° C. for 5 hours. The reaction mixture was concentrated down to dryness, ethyl acetate followed by water was added and the layers were separated. The organic layer was washed with water, then brine and dried over MgSO4. Evaporation gave the title compound (440 mg). MS (Electrospray): 291.11 (MH+) for C10H12BrNO4
The compounds in the table below were prepared using this procedure and the specified starting materials.
methyl 5-bromo-2-(2-hydroxyethoxy)nicotinate
methyl 5-bromo-2-(2- morpholinoethoxy)nicotinate
methyl 5-bromo-2-(2,2,2- trifluoroethoxy)nicotinate
methyl 5-bromo-6-methoxynicotinate
methyl5-bromo-2-(2-methoxyethoxy)nicotinate Intermediate 460 (440 mg, 1.52 mmol), bis(pinacolato)diboron (539 mg, 2.12 mmol), and potassium acetate (447 mg, 4.55 mmol) were combined in 1,4-dioxane (20 mL). PdCl2(dppf)-CH2Cl2 Adduct (1239 mg, 1.52 mmol) was added and the reaction was degassed with argon then heated to 90° C. for 3 hours. Purification by flash chromatography (10-100% ethyl acetate in hexanes) afforded the title compound as a mixture of boronic acid and pinacol ester (365 mg, ester: acid 1:1 mixture).
MS (Electrospray): 338.18 (MH+) for C16H24BNO6
MS (Electrospray): 256.03 (MH+) for C10H14BNO6
The compounds in the below table were prepared using this procedure and the specified starting materials.
1H NMR
methyl 2,6-dimethoxy-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)nicotinate
methyl 2-(2-hydroxyethoxy)-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)nicotinate
methyl 2-(2-morpholinoethoxy)-5- (4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)nicotinate
methyl 5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-2-(2,2,2-trifluoroethoxy)nicotinate
methyl 6-methoxy-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)nicotinate
NaH (0.07 g, 1.75 mmol) was suspended in anhydrous NMP (5 mL) and cooled to 0° C., 3-cyclopropyl-1H-pyrazole (0.235 g, 2.18 mmol) was then added slowly and the mixture was stirred for 15 minutes. 5-Bromo-4-chloro-N-(3,5-dimethoxyphenyl)pyrimidin-2-amine Intermediate 213 (0.5 g, 1.45 mmol) in a solution of 10 ml of NMP under argon was added and the reaction mixture was allowed to warm to room temperature overnight. Water (60 ml) was added to give a precipitate, which was filtered, washed with water and dried under vacuum to give the title compound as an off- white solid (503 mg). MS (Electrospray): 417.27 (MH+) for C18H18BrN5O2
The compound below was prepared according the above procedure for Intermediate 471 using the specified starting materials.
5-bromo-N-(3,5-dimethoxyphenyl)-4-(5- methyl-3-(trifluoromethyl)-1H-1,2,4-triazol-1- yl)pyrimidin-2-amine
Methyl 5-bromo-6-chloronicotinate (2.885 g, 11.52 mmol), potassium fluoride (2.68 g, 46.07 mmol), and tetraphenylphosphonium bromide (2.90 g, 6.91 mmol) combined in acetonitrile (75 mL) to give a yellow suspension. The reaction mixture was warmed at reflux or overnight. Additional potassium fluoride (1 g, 17 mmol) was added and the mixture was refluxed for 5 days more. Evaporation and purification by flash chromatography (0-25% ethyl acetate in hexanes) afforded the title compound (1.53 g).
MS (Electrospray): 235.02 (MH+) for C7H5BrFNO2
2-(dimethylamino)ethanol (503 mg, 5.64 mmol) was dissolved in THF (6 mL) and cooled to 0° C. 1M Lithium bis(trimethylsilyl)amide in THF (6.41 mL, 6.41 mmol) was added slowly and the mixture was allowed stir for 15 minutes. A solution of methyl 5-bromo-6-fluoronicotinate Intermediate 473 (600 mg, 2.56 mmol) in THF (4 ml) was then added to the reaction mixture. The reaction was allowed to reach room temperature over 4 hours, 1M NH4Cl and dichloromethane were added and the layers were separated. The water layer was extracted with 5% methanol in methylene chloride. The pooled organic layers were dried over MgSO4 and purified by flash chromatography (3-10% methanol in methylene chloride) to afford the title compound (312 mg).
MS (Electrospray): 304.15 (MH+) for C11H15BrN2O3
Sodium hydride (0.207 g, 5.17 mmol) was suspended in DMF (12 mL) in an oven dried flask under nitrogen and treated with methyl5-bromo-2-hydroxynicotinate (1.2 g, 5.17 mmol). The mixture was stirred at room temperature for 30 minutes then 2-Bromoethyl methylether (1.458 mL, 15.52 mmol) was added dropwise. The mixture was then heated at 60° C. overnight. The mixture was diluted with water and extracted with EtOAc. The extracts were washed with brine, dried over sodium sulfate, and the solvent removed at reduced pressure. The residue was purified by flash chromatography, silica gel, 20-100% EtOAc in DCM to afford the desired product.
1H NMR
methyl 5-bromo-1-(2- methoxyethyl)-2-oxo- 1,2-dihydropyridine-3- carboxylate
The following compounds were prepared using the general method described above for Intermediate 134 using bis(pinacolato)diboron, 1,1′-bis(diphenylphosphino)ferrocene-palladium dichloride, potassium acetate and the starting material (SM) indicated.
methyl 1-(2-methoxyethyl)-2-oxo- 5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)-1,2-dihydropyridine- 3-carboxylate
methyl 6-(2-(dimethylamino)- ethoxy)-5-(4,4,5,5-tetramethyl-1,3,2- dioxaborolan-2-yl)nicotinate
To a solution of 2-methoxy-5-{2-[3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 760, 0.15 mmol, 75 mg) in CH2Cl2 (10 mL), were added Hydrazine monohydrate (0.38 mmol, 19 mg), triethylamine (0.6 mmol, 0.08 mL), 2-chloro-1-methylpyridinium iodide (0.19 mmol, 48 mg) and 4-(Dimethylamino)pyridine (0.03 mmol, 4 mg) and stirred overnight at RT. Six batches of the same size were run and all the reaction mixtures were combined, diluted with dichloromethane (10 mL) and further washed with 25% citric acid solution (2×10 mL), water (15 mL) and brine (15 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 2-3% MeOH in CHCl3) to afford 300 mg of the title compound.
2-methoxy-5-{2-[(3-methoxy-5- methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3- carbohydrazide
To a solution of 2-methoxy-5-{2-┌(3-methoxy-5-methylphenyl)amino┐-4-┌5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 761, 0.19 mmol, 100 mg) in DMSO (2 mL) was added triethylamine (0.97 mmol, 98 mg) and stirred for 10 min. To this, 2-chloro-1-methyl-pyridinium iodide (0.23 mmol, 60 mg), 4-(dimethylamino)pyridine (0.038 mmol, 5 mg) and hydrazine hydrate (0.48 mmol, 24 mg, 0.023 mL) were added and stirred for 4 h at RT. The reaction mixture was diluted with DCM (25 mL) and further washed with 25% citric acid solution (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 1-2% MeOH in CHCl3) to afford the title compound as 85 mg of white solid.
2-methoxy-5-{2-[(3-methoxy-5- methylphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3- carbohydrazide
A suspension of 5-bromo-N2-(3-chloro-4-fluoro-phenyl)-N4-(3-dimethylamino-propyl)-pyrimidine-2,4-diamine (Intermediate 26, 160 mg, 0.40 mmol), 2-methoxy-5-pyrimidineboronic acid (92 mg, 0.60 mmol), tris(dibenzylideneacetone)dipalladium(0) (36.3 mg, 0.04 mmol), 2-dicyclohexylphosphino-2′,4′,6′-triiso-propyl-1,1′-biphenyl (56.7 mg, 0.12 mmol) and sodium carbonate (42.0 mg, 0.40 mmol) in acetonitrile/water (4 ml:1 ml) was degassed with bubbling nitrogen for 10 min. and then heated to 90° C. After 1 h LC-MS indicated complete reaction, and the reaction mixture was diluted with ethyl acetate (50 mL). The organic layer was separated, dried over sodium sulfate, filtered and concentrated. Flash chromatography (12g column, 0-6% MeOH/CH2Cl2 with 0.75% triethylamine) provided 125 mg of the desired product.
MS: ES+ 432 for C20H23ClFN7O.
1H NMR (300 MHz, DMSO-D6) δ ppm 1.58-1.75 (m, 2H) 2.02 (s, 6H) 2.27 (t, J=6.59 Hz, 2H) 3.34-3.44 (m, 2H) 3.95 (s, 3H) 7.23-7.37 (m, 2H) 7.55-7.67 (m, 1H) 7.74-7.80 (m, 1H) 8.25 (dd, J=6.78, 2.64 Hz, 1H) 8.56 (s, 2H) 9.42 (s, 1H).
The following examples were prepared using the general method described above for Example 1 using 5-bromo-N2-(3-chloro-4-fluoro-phenyl)-N4-(3-dimethylamino-propyl)-pyrimidine-2,4-diamine (Intermediate 26) and the starting material (SM) indicated.
methyl 3-(2-(3-chloro-4-fluorophenylamino)-4- (3-(dimethylamino)propylamino) pyrimidin-5-yl)benzoate
N-(3-(2-(3-chloro-4-fluorophenylamino)-4- (3-(dimethylamino)propylamino) pyrimidin-5-yl)phenyl)methanesulfonamide
N2-(3-chloro-4-fluorophenyl)-N4-(3- (dimethylamino)propyl)-5-(1H-indol-6- yl)pyrimidine-2,4-diamine
Ethyl 5-(2-(3-chloro-4-fluorophenylamino)-4- (3-(dimethylamino)propylamino) pyrimidin-5-yl)nicotinate
Ethyl 4-(2-(3-chloro-4-fluorophenylamino)-4- (3-(dimethylamino)propylamino) pyrimidin-5-yl)benzoate
N2-(3-chloro-4-fluorophenyl)-N4-(3- (dimethylamino)propyl)-5-(4-methoxy- 3(trifluoromethyl)phenyl)pyrimidine-2,4- diamine
N2-(3-chloro-4-fluorophenyl)-5-(2,6- dimethoxypyridin-4-yl)-N4-(3- (dimethylamino)propyl)-pyrimidin-2,4- diamine
5-(benzofuran-2-yl)-N2-(3-chloro-4- fluorophenyl)-N4-(3-(dimethylamino) propyl)pyrimidine-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-N4-(3- (dimethylamino)propyl)-5-(3,4,5- trimethoxyphenyl)pyrimidin-2,4-diamine
N′-[3-(2-[(3-chloro-4-fluorophenyl)amino]-4- {[3-(dimethylamino)propyl]amino} pyrimidin-5-yl)phenyl]-N,N- dimethylsulfonamide
1-{5-[2-(3-chloro-4-fluorophenylamino)-4- [3-(dimethylamino)propylamino) pyrimidin-5-yl]thiophen-2-yl}ethanone
5-{2-(3-chloro-4-fluorophenylamino)-4- [3-(dimethylamino)propyl amino]pyrimidin-5-yl}-2-fluorobenzonitrile
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5-(3-nitrophenyl) pyrimidin-2,4-diamine
5-{2-(3-chloro-4-fluorophenylamino)-4- [3-(dimethylamino)propylamino] pyrimidin-5-yl}nicotinitrile
5-[1-(tert-butyldimethylsilyl)-1H- indol-3-yl]-N2-(3-chloro-4-fluorophenyl)- N4-[3-(dimethylamino)propyl] pyrimidin-2,4-diamine
5-{2-(3-chloro-4-fluorophenylamino)-4- [3-(dimethylamino)propylamino] pyrimidin-5-yl}thiophene-2-carboxylic acid
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5-(6-methoxy- pyridin-3-yl)pyrimidin-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5,5′- bipyrimidin-2,2′,4-triamine
N2-(3-chloro-4-fluorophenyl)-N4- [3-(dimethylamino)propyl]-5-(1H- pyrazol-4-yl)pyrimidine-2,4-diamine
5-(6-aminopyridin-3-yl)-N2-(3-chloro-4- fluorophenyl)-N4-[3-(dimethylamino) propyl]pyrimidine-2,4-diamine
Methyl 5-{2-(3-chloro-4-fluorophenylamino)- 4-[3-(dimethylamino)propylamino] pyrimidin-5-yl}benzo[b]thiophene-2- carboxylate
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5-pyridin-3- ylpyrimidin-2,4-diamine
(2E)-3-[4-(2-[(3-chloro-4- fluorophenyl)amino]-4-{[3- (dimethylamino)propyl]-amino}pyrimidin-5- yl)phenyl]prop-2-enoic acid
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5-(4- methoxyphenyl)-pyrimidine-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5-(3- methoxyphenyl)-pyrimidine-2,4-diamine
3-[4-(2-[(3-chloro-4-fluorophenyl)amino]-4- {[3-(dimethylamino)propyl]- amino}pyrimidin-5-yl)phenyl]propanoic acid
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5-(2- methoxyphenyl)-pyrimidin-2,4-diamine
(2E)-3-[3-(2-[(3-chloro-4- fluorophenyl)amino]-4-{[3- (dimethylamino)propyl]-amino}pyrimidin-5- yl)phenyl]prop-2-enoic acid
4-(2-[(3-chloro-4-fluorophenyl)amino]-4- {[3-(dimethylamino)propyl]- amino}pyrimidin-5-yl)benzoic acid
3-(2-[(3-chloro-4-fluorophenyl)amino]-4- {[3-(dimethylamino)propyl]- amino}pyrimidin-5-yl)benzoic acid
N2-(3-chloro-4-fluorophenyl)-N4-[3- (dimethylamino)propyl]-5,5′-bipyrimidine-2,4- diamine
The following examples were prepared using the general method described above for Example 1 using pyrimidin-5-ylboronic acid and the starting material (SM) indicated.
N2-(3-chloro-4- fluorophenyl)-N4- propyl-5-pyrimidin- 5-ylpyrimidine-2,4- diamine
1-[3-[[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]propyl] pyrrolidin-2-one
1-[4-[[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]piperidin-1- yl]ethanone
N2-(3-chloro-4- fluorophenyl)-N4-(2- dimethylaminoethyl)- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
N-[2-[[2-[(3-chloro- 4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]ethyl] acetamide
N2-(3-chloro-4- fluorophenyl)-N4- (pyridin-2-ylmethyl)- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4- (pyridin-3-ylmethyl)- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4- (pyridin-4-ylmethyl)- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
tert-butyl N-[2-[[2- [(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]ethyl] carbamate
3-[[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]propanamide
N2-(3-chloro-4- fluorophenyl)-N4-(2- morpholin-4-ylethyl)- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-(2- pyridin-2-ylethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-(2- pyridin-3-ylethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-(2- pyridin-4-ylethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-[2- (1,1-dioxo-1,4- thiazinan-4-yl)ethyl]- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-[3- (1,1-dioxo-1,4- thiazinan-4- yl)propyl]-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-(3- morpholin-4- ylpropyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-(2- methoxyethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N-(3-chloro-4- fluorophenyl)-N′- (oxolan-2-ylmethyl)- 5-pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4-(2- propan-2- yloxyethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4- (furan-2-ylmethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
ethyl 2-[[2-[(3- chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]acetate
N2-(3-chloro-4- fluorophenyl)-N4-(2- phenoxyethyl)-5- pyrimidin-5- ylpyrimidine-2,4- diamine
methyl (2R)-2-[[2- [(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]propanoate
tert-butyl 2-[[[2-[(3- chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]methyl] benzimidazole-1- carboxylate
N2-(3-chloro-4- fluorophenyl)-N4-[(5- methylpyrazin-2- yl)methyl]-5- pyrimidin-5- ylpyrimidine-2,4- diamine
N2-(3-chloro-4- fluorophenyl)-N4- propan-2-yl-5- pyrimidin-5- ylpyrimidine-2,4- diamine
1-[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]piperidin-4-ol
[1-[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]piperidin-3- yl]methanol
N-(3-chloro-4- fluorophenyl)-4-(4- morpholin-4- ylpiperidin-1-yl)-5- pyrimidin-5- ylpyrimidin-2-amine
1-[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4-yl]-N- methylpiperidine-4- carboxamide
N-(3-chloro-4- fluorophenyl)-4-(4- fluoropiperidin-1-yl)- 5-pyrimidin-5- ylpyrimidin-2-amine
N-(3-chloro-4- fluorophenyl)-4-(4- methoxypiperidin-1- yl)-5-pyrimidin-5- ylpyrimidin-2-amine
1-[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]pyrrolidin-3-ol
4-(azetidin-1-yl)-N- (3-chloro-4- fluorophenyl)-5- pyrimidin-5- ylpyrimidin-2-amine
trans-4-[[2-[(3- chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]amino]cyclohexan- 1-ol
N-[1-[2-[(3-chloro-4- fluorophenyl)amino]- 5-pyrimidin-5- ylpyrimidin-4- yl]piperidin-4- yl]acetamide
N-(3-chloro-4- fluorophenyl)-4-[5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]-5,5′- bipyrimidin-2-amine
N-(3-chloro-4- fluorophenyl)-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]-5,5′- bipyrimidin-2-amine
N-(3-chloro-4- fluorophenyl)-4-(4,5- dichloro-1H- imidazol-1-yl)-5,5′- bipyrimidin-2-amine
N-(3-chloro-4- fluorophenyl)-4-(1H- pyrrol-1-yl)-5,5′- bipyrimidin-2-amine
tert-butyl 3-(2-(3- chloro-4- fluorophenylamino)- 5,5′-bipyrimidin-4- ylamino)propylcar- bamate
N2-(3-chloro-4- fluorophenyl)-N4-(3- methoxypropyl)-5,5′- bipyrimidin-2,4- diamine
N-(3-chloro-4- fluorophenyl)-4- morpholin-5,5′- bipyrimidin-2-amine
The following examples were prepared using the general method described above for Example 1 using (2-methoxypyrimidin-5-yl)boronic acid, tris(dibenzyledeneacetone)-dipalladium(0), 2-dicyclohexyl phosphino-2′,4′,6′-triiso-propyl-1,1′-biphenyl, sodium carbonate and the starting material (SM) indicated.
N-(3-chloro-4- fluorophenyl)-2′- methoxy-4- morpholin-5,5′- bipyrimidin-2-amine
N2-(3-chloro-4- fluorophenyl)-2′- methoxy-N4-(3- methoxypropyl)-5,5′- bipyrimidine-2,4- diamine
A stirred mixture of 5-{2-(3-chloro-4-fluorophenylamino)-4-[3-(dimethylamino)propylamino]pyrimidin-5-yl}nicotinonitrile (Example 15, 350 mg, 0.82 mmol) and aqueous hydroxylamine 50 weight % (0.097 mL, 1.64 mmol) in dioxane (3 mL) was prepared under nitrogen and heated to 80° C. After three hours, dioxane was removed under vacuum, and the residue was suspended in methanol. The mixture was cooled to near-zero while being stirred. The title compound was collected as a white solid (200 mg, 53%).
MS: ES+ 459 for C21H24ClFN8O.
A stirred suspension of (Z)-5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(dimethylamino)propylamino)pyrimidin-5-yl)-N′-hydroxynicotinimidamide (Example 79, 100 mg, 0.22 mmol), triethylamine (0.045 mL, 0.33 mmol), and 1,1′-carbonyldiimidazole (35 mg, 0.22 mmol) in dioxane (2 mL) were combined under nitrogen and heated to 80 degrees C. The suspension became a solution, and after 2 hours, the solvent was removed under vacuum. Reverse-phase chromatography (acetonitrile and water with ammonium acetate additive) was used to isolate the title compound (25 mg, 98%).
MS: ES+ 485 for C22H22ClFN8O2.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.86-1.99 (m, 2H) 2.72 (s, 6 H) 2.98-3.39-3.51 (m, 2H) 7.06 (t, J=5.46 Hz, 1H) 7.33 (t, J=9.14 Hz, 1H) 7.56-7.70 (m, 1H) 7.90 (s, 1H) 8.13 (s, 1H) 8.21 (dd, J=6.88, 2.54 Hz, 1H) 8.60 (s, 1H) 8.92 (s, 1H) 9.50 (s, 1H).
3-(5-(2-(3-Chloro-4-fluorophenylamino)-4-(3-(dimethylamino)propylamino)pyrimidin-5-yl)pyridin-3-yl)-1,2,4-oxadiazol-5(4H)-one (Example 80, 21 mg, 0.04 mmol) was dissolved in dioxane with stirring. 0.1 N NaOH (0.4 mL, 0.04 mmol) was added to the stirred solution. After another 20 minutes of stirring the solvent was removed under vacuum. The residue was placed under high vacuum overnight and characterized (21 mg, 91%).
MS: ES+485 for C22H22ClFN8O2 (free acid detected by LCMS).
1H NMR (300 MHz, DMSO-d6) δ ppm 0.70-0.86 (m, 2H) 1.12-1.26 (m, 2H) 1.59-1.74 (m, 2H) 2.06 (br. s., 6H) 7.17-7.34 (m, 2H) 7.53-7.64 (m, 1H) 7.77 (s, 1H) 7.98 (t, J=1.88 Hz, 1H) 8.18 (dd, 1H) 8.47 (d, J=2.07 Hz, 1H) 8.84 (d, J=1.70 Hz, 1 H) 9.39 (s, 1H).
A solution of 3,5-dimethyl-1H-pyrazole (555 mg, 5.78 mmol, 2.2 eq) in DMF (2 mL) was added slowly to a suspension of sodium hydride (60%, 220 mg, 5.52 mmol, 2.1 eq) in DMF (1 mL) at 0° C. The reaction mixture was stirred for 25 min at room temperature. A solution of N-(3-chloro-4-fluorophenyl)-4-methylsulfonyl-5-pyrimidin-5-ylpyrimidin-2-amine (Intermediate 123, 1.0 g, 2.63 mmol, 1 eq) in DMF (1 mL) was added slowly to the reaction mixture, and the mixture was stirred for 1 h. Water was added to the reaction mixture (˜6 mL) and the solid formed was filtered and dried to provide the title compound (750 mg).
MS(ES): 396 (M+1) for C19H15ClFN7.
1H NMR 400 MHz, CDCl3: δ 2.04 (s, 3H), 2.43 (s, 3H), 5.98 (s, 1H), 7.13 (t, J=8.72 Hz, 1H), 7.34-7.37 (m, 1H), 7.53 (br s, 1H), 7.86 (dd, J=2.52, 6.40 Hz, 1H), 8.45 (br s, 2H), 8.53 (s, 1H), 9.14 (br s, 1H).
The following examples were prepared using the general method described above for Example 82 using Intermediate 123, sodium hydride and the starting material (SM) indicated.
N-(3-chloro-4- fluorophenyl)-4- [4-(pyridin-4-yl)- 1H-pyrazol-1-yl]- 5,5′-bipyrimidin- 2-amine
N-(3-chloro-4- fluorophenyl)-4- [4- (trifluoromethyl)- 1H-imidazol-1- yl]-5,5′- bipyrimidin-2- amine
N-(3-chloro-4- fluorophenyl)-4- (2-methyl-1H- imidazol-1-yl)- 5,5′-bipyrimidin- 2-amine
N-(3-chloro-4- fluorophenyl)-4- (2H-1,2,3-triazol- 2-yl)-5,5′- bipyrimidin-2- amine
N-(3-chloro-4- fluorophenyl)-4- (2H-1,2,3-triazol- 1-yl)-5,5′- bipyrimidin-2- amine
N-(3-chloro-4- fluorophenyl)-4- (2H-1,2,3-triazol- 2-yl)-5,5′- bipyrimidin-2- amine
N-(3-chloro-4- fluorophenyl)-4- (1H- [1,2,3]triazolo[4,5- b]pyridin-1-yl)- 5,5′-bipyrimidin- 2-amine
4-(1H- benzotriazol-1- yl)-N-(3-chloro-4- fluorophenyl)- 5,5′-bipyrimidin- 2-amine
The following examples were prepared using the general method described above for Example 1 using 3-(ethoxycarbonyl)pyridine-5-boronic acid pinacol ester, tris(dibenzyledeneacetone)-dipalladium(0), 2-dicyclohexyl phosphino-2′,4′,6′-triiso-propyl-1,1′-biphenyl, sodium carbonate and the starting material (SM) indicated.
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- propylamino- pyrimidin-5-yl]- nicotinic acid ethyl ester
5-{2-(3-Chloro-4- fluoro-phenylamino)-4- [3-(2-oxo-pyrrolidin-1- yl)-propylamino]- pyrimidin-5-yl}- nicotinic acid ethyl ester
5-[4-(1-Acetyl- piperidin-4-ylamino)-2- (3-chloro-4-fluoro- phenylamino)- pyrimidin-5-yl]- nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (2-dimethylamino)- ethylamino)-pyrimidin- 5-yl]-nicotinic acid ethyl ester
5-[4-(2-Acetylamino- ethylamino)-2-(3- chloro-4-fluoro- phenylamino)- pyrimidin-5-yl]- nicotinic acid ethyl ester
5-{2-(3-Chloro-4- fluoro-phenylamino)-4- [(pyridin-2-ylmethyl)- amino]-pyrimidin-5- yl}-nicotinic acid ethyl ester
5-{2-(3-Chloro-4- fluoro-phenylamino)-4- [(pyridin-3-ylmethyl)- amino]-pyrimidin-5- yl}-nicotinic acid ethyl ester
5-{2-(3-Chloro-4- fluoro-phenylamino)-4- [(pyridin-4-ylmethyl)- amino]-pyrimidin-5- yl}-nicotinic acid ethyl ester
5-[4-(2-tert- Butoxycarbonylamino- ethylamino)-2-(3- chloro-4-fluoro- phenylamino)- pyrimidin-5-yl]- nicotinic acid ethyl ester
5-[4-(2-Carbamoyl- ethylamino)-2-(3- chloro-4-fluoro- phenylamino)- pyrimidin-5-yl]- nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (2-morpholin-4-yl- ethylamino)-pyrimidin- 5-yl]-nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (2-pyridin-2-yl- ethylamino)-pyrimidin- 5-yl]-nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (2-pyridin-3-yl- ethylamino)-pyrimidin- 5-yl]-nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (2-pyridin-4-yl- ethylamino)-pyrimidin- 5-yl]-nicotinic acid ethyl ester
5-{2-(3-Chloro-4- fluoro-phenylamino)-4- [2-(1,1-dioxo-1λ6- thiomorpholin-4-yl)- ethylamino]-pyrimidin- 5-yl}-nicotinic acid ethyl ester
5-{2-(3-Chloro-4- fluoro-phenylamino)-4- [3-(1,1-dioxo-1λ6- thiomorpholin-4-yl)- propylamino]- pyrimidin-5-yl}- nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (3-morpholin-4-yl- propylamino)- pyrimidin-5-yl]- nicotinic acid ethyl ester
5-[2-(3-Chloro-4- fluoro-phenylamino)-4- (2-methoxy- ethylamino)-pyrimidin- 5-yl]-nicotinic acid ethyl ester
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (oxolan-2- ylmethylamino)pyrimidin- 5-yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2-propan-2- yloxyethylamino)pyrimidin- 5-yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (furan-2- ylmethylamino)pyrimidin- 5-yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [(2-ethoxy-2- oxoethyl)amino]pyrimidin- 5-yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [(2-ethoxy-2- oxoethyl)amino]pyrimidin- 5-yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [[(2R)-1-methoxy-1- oxopropan-2- yl]amino]pyrimidin-5- yl]pyridine-3- carboxylate
tert-butyl 2-[[[2-[(3- chloro-4- fluorophenyl)amino]-5- (5- ethoxycarbonylpyridin- 3-yl)pyrimidin-4- yl]amino]methyl] benzimidazole- 1-carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [(5-methylpyrazin-2- yl)methylamino]pyrimidin- 5-yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (propan-2- ylamino)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-hydroxypiperidin-1- yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [3- (hydroxymethyl)piper- idin-1-yl]pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-morpholin-4- ylpiperidin-1- yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [4- (methylcarbamoyl)piper- idin-1-yl]pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-fluoropiperidin-1- yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[3-chloro-4- fluorophenyl)amino]-4- (4-methoxypiperidin-1- yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (3-hydroxypyrrolidin- 1-yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2-methylpyrrolidin-1- yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2,5- dimethylpyrrolidin-1- yl)pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[4-(azetidin-1- yl)-2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl]pyridine- 3-carboxylate
ethyl 5-[4-(azepan-1- yl)-2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl]pyridine- 3-carboxylate
ethyl 5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [(trans-4- hydroxycyclohexyl) amino]pyrimidin-5- yl]pyridine-3- carboxylate
ethyl 5-[4-(4- acetamidopiperidin-1- yl)-2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl]pyridine- 3-carboxylate
ethyl 5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(1H-imidazol-1- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylate
ethyl 5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(1H-pyrazol-1- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylate
ethyl 5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(4- methylpiperazin-1- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-(3,5-dimethyl-1H- pyrazol-1-yl)pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-(4-chloro-1H- pyrazol-1-yl)pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-(4,5-dichloro-1H- imidazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-(1H-pyrrol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (2,6- dimethylmorpholino) pyrimidin-5-yl)nicotinate
ethyl 5-(4-(3-(1H- benzo[d]imidazol-2- yl)propylamino)-2-(3- chloro-4- fluorophenylamino) pyrimidin-5-yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(5-methylpyrazine- 2- carboxamido)propyl- amino)pyrimidin-5- yl)nicotinate
ethyl 5-(4-(4- acetylpiperazin-1-yl)-2- (3-chloro-4- fluorophenylamino) pyrimidin-5-yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (3- methoxypropylamino) pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin- 5-yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H- imidazol-5- yl)methylamino) pyrimidin-5-yl) nicotinate
(R)-ethyl 5-(2-(3- chloro-4- fluorophenylamino)-4- (tetrahydrofuran-3- ylamino)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (pyrrolidin-1- yl)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-pyrazol- 4- yl)methylamino) pyrimidin-5-yl)- nicotinate
ethyl 5-(2-(3-chloro-4- fluorphenylamino)-4- (1,3-dimethoxypropan- 2-ylamino)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (4-(2- methoxyethyl)piperazin- 1-yl)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (4-methylpiperazin-1- yl)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (piperidin-1- yl)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(5-methyl-1H- pyrazol-4- yl)propylamino) pyrimidin-5-yl) nicotinate
Ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 124, 200 mg, 0.44 mmol) was suspended in NMP (1 mL), treated with N,N-diisopropylethylamine (1 eq) and the 2-(1H-imidazol-4-yl)ethanamine (49 mg, 0.44 mmol). The mixture was heated at 90° C. for 30 min in a sealed tube. The reaction mixture was added to water and stirred for 15 min. The precipitated solid was filtered, washed with water and dried to afford the crude product. It was further purified by flash chromatography (chloroform:methanol (9:1)) to provide the title compound (100 mg).
MS (ES) 482 (M+1) for C23H21ClFN7O2.
1H NMR 300 MHz, DMSO-d6: δ 1.34 (t, J=6.96 Hz, 3H), 3.16 (br s, 2H), 3.58 (br s, 2H), 4.36 (q, J=7.68 Hz, 2H), 6.82 (s, 1H), 7.09 (br s, 1H), 7.29 (t, J=7.95 Hz, 1H), 7.51 (s, 1H), 7.7 (br s, 1H), 7.86 (s, 1H), 8.16 (br s, 1H), 8.21 (s, 1H), 8.76 (s, 1H), 9.04 (s, 1H), 9.47 (s, 1H), 11.8 (br s, 1H).
The following examples were prepared using the general method described above for Example 154 using ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-3-carboxylate Intermediate 124, N,N-diisopropylethylamine and the starting material (SM) indicated.
ethyl 5-(4-{[2- (1H-benzimidazol-2- yl)ethyl]amino}- 2-[(3-chloro-4- fluorophenyl)amino]- pyrimidin-5-yl)pyridine-3- carboxylate
ethyl 5-(2-[(3- chloro-4-fluorophenyl) amino]-4-{[2-(1H- pyrazol-4-yl)ethyl]amino} pyrimidin-5-yl)pyridine-3- carboxylate
ethyl 5-(2-[(3- chloro-4- fluorophenyl)amino]- 4-{[2-(4-methyl-1,3- thiazol-5- yl)ethyl]amino} pyrimidin-5-yl)pyridine-3- carboxylate
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3,5-dimethyl-1H-pyrazol-1-yl)pyrimidin-2-amine (Intermediate 112, 1 eq, 3.5 mmol), {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid (1.1 eq, 3.95 mmol), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (10 mol %) and sodium carbonate (1 eq, 3.5 mmol) in acetonitrile/water (20 mL: 5 mL) was degassed and heated to 90° C. for 15-20 min in an oil bath under inert atmosphere. Completion of the reaction was monitored by TLC. The solvent was removed under vacuum and the crude mixture was taken up in CHCl3 (30 mL). It was then washed with water, brine, dried over sodium sulfate, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform-methanol as an eluent to provide the title compound (620 mg, 63%).
MS(ES): 492 (M+1) for C26H23ClFN5O2.
1H NMR 400 MHz, DMSO-d6: δ 1.25 (dt, J=1.28, 7.06 Hz, 3H), 2.02 (s, 3H), 2.13 (s, 3H), 4.18 (dq, J=1.12, 7.14 Hz, 2H), 6.03 (s, 1H), 6.54 (dd, J=1.24, 16.02 Hz, 1H), 7.01 (d, J=7.24 Hz, 1H), 7.34 (t, J=7.76 Hz, 1H), 7.37-7.42 (m, 2H), 7.56-7.60 (m, 2H), 7.63-7.67 (m, 1H), 8.10 (d, J=6.76 Hz, 1H), 8.87 (d, J=1.36 Hz, 1H), 10.30 (s, 1H).
The following examples were prepared following the general procedure described above for Example 158 using {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid, [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II), sodium carbonate and the starting material (SM) listed.
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (4-chloro-1H-pyrazol-1- yl)pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- (4,5-dichloro-1H- imidazol-1-yl)pyrimidin- 5-yl}phenyl)prop-2- enoate
(E)-ethyl 3-(3-(4-(4- acetylpiperazin-1-yl)-2- (3-chloro-4- fluorophenylamino) pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (2,6- dimethylmorpholino) pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- (dimethylcarbamoyl) piperazin-1-yl)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (5-methylpiperazine-2- carboxamido)propylamino) pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino) pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-pyrazol-4- yl)methylamino)pyrimidin- 5-yl)phenyl)acrylate
(R,E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (tetrahydrofuran-3- ylamino)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- methylpiperazin-1- yl)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (piperidin-1- yl)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-imidazol-5- yl)methylamino)pyrimidin- 5-yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (1,3-dimethoxypropan-2- ylamino)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- (methylsulfonyl)piper- azin-1-yl)pyrimidin-5- yl)phenyl)acrylate
The following examples were prepared using the general method described above for Example 1 using tris(dibenzyledeneacetone)-dipalladium(0), 2-dicyclohexyl phosphino-2′,4′,6′-triiso-propyl-1,1′-biphenyl, sodium carbonate and the starting materials (SM) indicated.
ethyl 6-(2-(3-chloro- 4- fluorophenylamino)- 4- morpholinopyrimidin- 5-yl)-1-(2- methoxyethyl)-4-oxo- 1,4-dihydroquinoline- 3-carboxylate
5-(2-(3-chloro-4- fluorophenylamino)- 4- morpholinopyrimidin- 5-yl)thiophene-2- carboxylic acid
ethyl 6-(2-(3-chloro- 4- fluorophenylamino)- 4-(3- methoxypropylamino)- pyrimidin-5-yl)-1- (2-methoxyethyl)-4- oxo-1,4- dihydroquinoline-3- carboxylate
5-(2-(3-chloro-4- fluorophenylamino)- 4-(3- methoxypropylamino)- pyrimidin-5- yl)thiophene-2- carboxylic acid
1-(5-(2-(3-chloro-4- fluorophenylamino)- 4-(3- methoxypropylamino)- pyrimidin-5- yl)thiophen-2- yl)ethanone
methyl 5-(2-(3- chloro-4- fluorophenylamino)- 4-(3- methoxypropylamino)- pyrimidin-5- yl)benzo[b]thiopene- 2-carboxylate
methyl 6-(2-(3- chloro-4- fluorophenylamino)- 4-(3- methoxypropylamino)- pyrimidin-5- yl)quinoline-3- carboxylate
methyl 5-(2-(3- chloro-4- fluorophenylamino)- 4- morpholinopyrimidin- 5- yl)benzo[b]thiophene- 2-carboxylate
A solution of 2-(1H-imidazol-4-yl)ethanamine (46 mg, 0.4 mmol) in THF (1 mL) was added slowly by syringe to a stirred suspension of sodium hydride (60%, 16 mg, 0.4 mmol) in THF (1 ml) at 0° C. After 30 min, ethyl (2E)-3-(3-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}phenyl)prop-2-enoate (Intermediate 125, 200 mg, 0.4 mmol) in THF (2 mL) was added slowly by syringe to the stirred mixture while maintaining the temperature at 0° C. The mixture was stirred under nitrogen for 2 h and poured into ice-water, extracted with ethyl acetate (3×50 mL). The ethyl acetate layer was then washed with brine, dried over Na2SO4, filtered and concentrated. The crude product was purified by column chromatography using 1% MeOH in CHCl3 to yield the title compound (150 mg).
MS(ES): 506 (M+1) for C26H24ClFN6O2.
1H NMR 400 MHz, DMSO-d6: δ 1.26 (t, J=7.08 Hz, 3H), 2.81-2.85 (m, 2H), 3.62-3.94 (m, 2H), 4.20 (q, J=7.12 Hz, 2H), 6.68 (d, J=16.08 Hz, 1H), 6.84 (br s, 1H), 6.93 (s, 1H), 7.26 (t, J=9.12 Hz, 1H), 7.38 (d, J=7.92 Hz, 1H), 7.48 (t, J=7.64 Hz, 1H), 7.66-7.76 (m, 4H), 7.84 (s, 1H), 8.17 (dd, J=2.64, 6.82 Hz, 1H), 9.41 (s, 1H), 12.50 (br s, 1H).
The following examples were prepared using the general method described above for Example 183 using ethyl (2E)-3-(3-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}phenyl)prop-2-enoate Intermediate 125, sodium hydride and the starting material (SM) indicated.
ethyl (2E)-3-[3-(4-{[2- (1H-benzimidazol-2- yl)ethyl]amino}-2-[(3- chloro-4- fluorophenyl)amino]- pyrimidin-5-yl)phenyl]- prop-2-enoate
ethyl (2E)-3-[3-(2-[(3- chloro-4- fluorophenyl)amino]-4- {[2-(1H-pyrazol-4- yl)ethyl]amino}-pyrimidin- 5-yl)phenyl]prop-2- enoate
ethyl (2E)-3-[3-(2-[(3- chloro-4- fluorophenyl)amino]-4- {[2-(4-methyl-1,3- thiazol-5- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoate
ethyl (2E)-3-(3-{2-[3- chloro-4- fluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- [4-(pyridin-4-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- [4-(trifluoromethyl)-1H- imidazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (2-methyl-1H-imidazol- 1-yl)pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (2H-1,2,3-triazol-2- yl)pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (1H-1,2,3-triazol-1- yl)pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (2H-[1,2,3]triazolo[4,5- b]pyridin-2-yl)pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{4-(1H- benzotriazol-1-yl)-2-[(3- chloro-4- fluorophenyl)amino]- pyrimidin-5-yl}phenyl)prop- 2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (1H-pyrrol-1- yl)pyrimidin-5- yl}phenyl)prop-2-enoate
The following examples were prepared using the general method described above for Example 1 using {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid, tris(dibenzylideneacetone)dipalladium(0), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl, sodium carbonate and the starting material (SM) indicated.
ethyl (2E)-3-[3-(2- [(3-chloro-4- fluorophenyl)amino]- 4-{[2-(1H- imidazol-1- yl)ethyl]amino}- pyrimidin-5- yl)phenyl]prop-2- enoate
ethyl (2E)-3-[3-(2- [(3-chloro-4- fluorophenyl)amino]- 4-{[2-(1H- pyrazol-1- yl)ethyl]amino}- pyrimidin-5- yl)phenyl]prop-2- enoate
ethyl (2E)-3-[3-(2- [(3-chloro-4- fluorophenyl)amino]- 4-{[2-(4- methylpiperazin-1- yl)ethyl]amino}- pyrimidin-5- yl)phenyl]prop-2- enoate
(E)-ethyl 3-(3-(2- (3-chloro-4- fluorophenylamino)- 4-(4- (cyclopropanecar- bonyl)piperazin-1- yl)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(4- (3-(1H- benzo[d]imidazol- 2-yl)propylamino)- 2-(3-chloro-4- fluorophenylamino) pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2- (3-chloro-4- fluorophenylamino)- 4-(4-(2- methoxyethyl)- piperazin-1- yl)pyrimidin-5- yl)phenyl)acrylate
(E)-ethyl 3-(3-(2- (3-chloro-4- fluorophenylamino)- 4-(pyrrolidin-1- yl)pyrimidin-5- yl)phenyl)acrylate
A solution of 4-(1H-pyrazol-4-yl)-pyridine (838 mg, 5.78 mmol) in DMF (2 mL) was added slowly to a suspension of sodium hydride (60%, 220 mg, 5.52 mmol) in DMF (2 mL). The reaction mixture was stirred for 25 min at room temperature. A solution of ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 124, 1.18 g, 2.63 mmol) in DMF (1 mL) was added slowly to the reaction mixture and the mixture was stirred for 1 h. Water was added (˜6 mL), and the solid formed was filtered, dried to yield the title compound (900 mg).
MS(ES): 516 (M+1) for C26H19ClFN7O2.
1H NMR (400 MHz, DMSO-d6): δ 1.30 (t, J=7.20 Hz, 3H), 4.34 (q, J=7.20 Hz, 2H), 7.46 (t, J=8.80 Hz, 1H), 7.70-7.76 (m, 3H), 8.14-8.16 (m, 2H), 8.27 (s, 1H), 8.59 (s, 2H), 8.71 (s, 1H), 8.76 (s, 1H), 9.03 (s, 1H), 9.09 (s, 1H), 10.41 (s, 1H).
The following examples were prepared using the general method described above for Example 203 using ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 124), sodium hydride and the starting material (SM) indicated.
ethyl 5-{2-[(3-chloro- 4- fluorophenyl)amino]- 4-[4- (trifluoromethyl)-1H- imidazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4- fluorophenyl)amino]- 4-(2-methyl-1H- imidazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4- fluorophenyl)amino]- 4-(2H-1,2,3-triazol-2- yl)pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4- fluorophenyl)amino]- 4-(1H-1,2,3-triazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro- 4- fluorophenyl)amino]- 4-(1H- [1,2,3]triazolo[4,5- b]pyridin-1- yl)pyrimiddin-5- yl}pyridine-3- carboxylate +
ethyl 5-{2-[(3-chloro- 4- fluorophenyl)amino]- 4-(2H- [1,2,3]triazolo[4,5- b]pyridin-2- yl)pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{4-(1H- benzotriazol-1-yl)-2- [(3-chloro-4- fluorophenyl)amino]- pyrimidin-5- yl}pyridine-3- carboxylate
To a stirred solution of tert-butyl 2-[[[2-[(3-chloro-4-fluorophenyl)amino]-5-(5-ethoxycarbonylpyridin-3-yl)pyrimidin-4-yl]amino]methyl]benzimidazole-1-carboxylate (Example 114, 500 mg, 0.81 mmol) in 1,4-dioxane (10 mL) under nitrogen atmosphere was added 4N hydrochloric acid in 1,4-dioxane (10 mL) dropwise. The reaction mixture was stirred at room temperature for 24 h, then concentrated to give ethyl 5-[4-(1H-benzimidazol-2-ylmethylamino)-2-[(3-chloro-4-fluorophenyl)amino]pyrimidin-5-yl]pyridine-3-carboxylate hydrochloride as a white solid in 37% yield (150 mg, 0.29 mmol).
MS(ES):518.2 (M+1) for C26H21ClFN7O2.
1H NMR (400 MHz) DMSO-d6: δ 1.35 (t, J=7.08 Hz, 3H), 4.40 (q, J=2.88 Hz, 2H), 4.98 (d, J=5.16 Hz, 2H), 7.12 (t, J=0.00 Hz, 1H), 7.45 (br 1H), 7.52 (dd, J=6.12, 3.20 Hz, 1H), 7.60 (s 7.77 (dd, J=6.16, 3.12 Hz, 2H), 8.09 (s, 1H), 8.49 (t, J=2.08 Hz, 1H), 9.03 (d, J=2.20 Hz, 1H), 9.13 (d, J=2.00 Hz, 1H), 10.00 (br s, 1H).
The following examples were prepared by the general method described above for Example 210 using 4N hydrochloric acid in dioxane and the starting material (SM) indicated.
N4-(3-aminopropyl)- N2-(3-chloro-4- fluorophenyl)-5,5′- bipyrimidine-2,4- diamine
A stirred suspension of 2-(3-chloro-4-fluorophenylamino)-4-(3-methoxypropylamino)pyrimidine-5-carbothioamide (Intermediate 128, 171 mg, 0.46 mmol) and methyl 3-bromo-2-oxopropanoate (84 mg, 0.46 mmol) in ethanol (2 mL) was purged with a stream of nitrogen and then placed under an atmosphere of nitrogen. This was heated to 80 degrees C. for several days, with ethanol replaced as necessary. The reaction mixture was allowed to cool to room temperature. The mixture was diluted with dimethylsulfoxide (5 mL). The title compound was isolated (80 mg, 38%) via reverse-phase chromatography (acetonitrile/water/ammonium acetate).
MS: ES+452 for C19H19ClFN5O3S.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.89 (quin, J=6.45 Hz, 2 H) 3.27 (s, 3 H) 3.51 (t, J=6.12 Hz, 2H) 3.63 (q, J=6.40 Hz, 2H) 3.87 (s, 3H) 7.33 (t, J=9.04 Hz, 1H) 7.57-7.71 (m, 1H) 8.24 (dd, J=6.88, 2.35 Hz, 1H) 8.45 (s, 1H) 8.60 (s, 1H) 9.37 (t, J=5.09 Hz, 1H) 9.88 (s, 1H).
N-(3-Chloro-4-fluorophenyl)-4-methylsulfonyl-5-pyrimidin-5-ylpyrimidin-2-amine (Intermediate 123, 0.21 mmol, 80 mg) was suspended in NMP (1 mL), then treated with N,N-diisopropylethylamine (0.25 mmol, 32 mg) and hexamethyleneimine (2.63 mmol). The mixture was heated at 90° C. for 30 min in a sealed tube. The reaction mixture was added to water and stirred for 15 min. The precipitated solid was filtered, washed with water and dried to afford the crude product which was further purified by flash chromatography to yield 18 mg of the title compound (0.045 mmol, 21%).
MS(ES):399 (M+1) for C20H20ClFN6.
1H NMR 400 MHz DMSO-d6: δ 1.41 (br s, 4H), 1.62 (br s, 4H), 3.31 (br s, 4H), 7.32 (t, J=9.12 Hz, 1H), 7.56 (ddd, J=9.00, 4.06, 2.76 Hz, 1H), 7.93 (s, 1H), 8.26 (dd, J=6.90, 2.52 Hz, 1H), 8.80 (s, 2H), 9.10 (s, 1H), 9.57 (s, 1H).
A solution of ethyl 5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(dimethylamino)propylamino)pyrimidin-5-yl) nicotinate (Example 5, 50 mg, 0.09 mmol) in methanol (0.3 ml) was stirred under ambient conditions; if solubility was less than complete to the naked eye then small volumes of THF were added as necessary. Sodium hydroxide (aqueous, 1 N, 0.341 ml) was added to the solution, which was stirred under ambient conditions until high or complete conversion was indicated by LCMS or TLC. Careful acidification with 1 N HCl (aq) was followed by an aqueous workup, using methylene chloride and methanol (9:1) as the organic phase to extract the water layer (4×25 ml). The organic extracts were combined, dried over sodium sulfate, and concentrated, affording product of high purity (15 mg) which was characterized by LCMS and 1H NMR.
MS: ES+445 for C21H22ClFN6O2
1H NMR (300 MHz, DMSO-D6) δ ppm 1.85-2.01 (m, 2H) 2.60 (s, 6H) 2.93 (t, J=7.06 Hz, 2H) 3.36-3.52 (m, 2H) 7.14 (t, J=5.18 Hz, 1H) 7.32 (t, J=9.14 Hz, 1H) 7.58-7.67 (m, 1H) 7.85 (s, 1H) 8.17 (t, J=2.07 Hz, 1H) 8.21 (dd, J=6.97, 2.64 Hz, 1H) 8.69 (d, J=2.07 Hz, 1H) 8.88 (d, J=1.51 Hz, 1H) 9.50 (s, 1H)
The following examples were prepared using the general method described above for Example 214 using 1N sodium hydroxide and the starting material (SM) indicated.
3-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[3-(dimethylamino) propyl]amino} pyrimidin-5-yl)benzoic acid
4-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[3-(dimethylamino) propyl]amino} pyrimidin-5-yl)benzoic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (dimethylamino) propylamino) pyrimidin-5-yl)benzo[b] thiophene-2-carboxylic acid
5-[2-(3-Chloro-4-fluoro- phenylamino)-4- propylamino-pyrimidin- 5-yl]-nicotinic acid
5-{2-(3-Chloro-4-fluoro- phenylamino)-4-[3-(2- oxo-pyrrolidin-1-yl)- propylamino]-pyrimidin- 5-yl}-nicotinic acid
5-[2-(3-Chloro-4-fluoro- phenylamino)-4-(2- dimethylamino- ethylamino)-pyrimidin-5- yl]-nicotinic acid
5-[4-(2-Acetylamino- ethylamino)-2-(3-chloro- 4-fluoro-phenylamino)- pyrimidin-5-yl]-nicotinic acid
5-{2-(3-Chloro-4-fluoro- phenylamino)-4- [(pyridin-2-ylmethyl)- amino]-pyrimidin-5-yl]- nicotinic acid
5-{2-(3-Chloro-4-fluoro- phenylamino)-4- [(pyridin-3-ylmethyl)- amino]-pyrimidin-5-yl}- nicotinic acid
5-{2-(3-Chloro-4-fluoro- phenylamino)-4- [(pyridin-4-ylmethyl)- amino]-pyrimidin-5-yl}- nicotinic acid
5-[4-(2-tert- Butoxycarbonylamino- ethylamino)-2-(3-chloro- 4-fluoro-phenylamino)- pyrimidin-5-yl]-nicotinic acid
5-[4-(2-Carbamoyl- ethylamino)-2-(3-chloro- 4-fluoro-phenylamino)- pyrimidin-5-yl]-nicotinic acid
5-[2-(3-Chloro-4-fluoro- phenylamino)-4-(2- morpholin-4-yl- ethylamino)-pyrimidin-5- yl]-nicotinic acid
5-[2-(3-Chloro-4-fluoro- phenylamino)-4-(2- pyridin-2-yl-ethylamino)- pyrimidin-5-yl]-nicotinic acid
5-[2-(3-Chloro-4-fluoro- phenylamino)-4-(2- pyridin-3-yl-ethylamino)- pyrimidin-5-yl]-nicotinic acid
5-[2-(3-Chloro-4-fluoro- phenylamino)-4-(2- pyridin-4-yl-ethylamino)- pyrimidin-5-yl]-nicotinic acid
1H NMR (400 MHz, DMSO- d6): δ 2.90 (t, J = 7.08 Hz, 2H), 3.58-3.64 (m, 2H), 7.01 (t, J = 5.40 Hz, 1H), 7.2-7.3 (m, 3H), 7.60 (m, 1H), 7.85 (s, 1H), 8.15-8.19 (m, 2H), 8.45 (dd, J = 4.48, 1.44 Hz, 2H), 8.69 (d, J = 2.20 Hz, 1H), 9.02 (d, J = 2.00 Hz, 1H), 9.48 (s, 1H).
5-{2-(3-Chloro-4-fluoro- phenylamino)-4-[2-(1,1- dioxo-1λ6- thiomorpholin-4-yl)- ethylamino]-pyrimidin-5- yl}-nicotinic acid
5-{2-(3-Chloro-4-fluoro- phenylamino)-4-[3-(1,1- dioxo-1λ6- thiomorpholin-4-yl)- propylamino]-pyrimidin- 5-yl}-nicotinic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (3-morpholin-4- ylpropylamino)pyrimidin- 5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2- methoxyethylamino)- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (oxolan-2- ylmethylamino)pyrimidin- 5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2-propan-2- yloxyethyolamino)pyrimidin- 5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (furan-2- ylmethylamino)pyrimidin- 5-yl]pyridine-3- carboxylic acid
5-[4- (carboxymethylamino)-2- [(3-chloro-4- fluorophenyl)amino]- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2- phenoxyethylamino)- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [[(2R)-1-hydroxy-1- oxopropan-2- yl]amino]pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[4-(1H-benzimidazol- 2-ylmethylamino)-2-[(3- chloro-4- fluorophenyl)amino]- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [(5-methylpyrazin-2- yl)methylamino]pyrimidin- 5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (propan-2- ylamino)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-hydroxypiperidin-1- yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [3- (hydroxymethyl)piper- idin-1-yl]pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-morpholin-4- ylpiperidin-1- yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluoprophenyl)amino]-4- [4- (methylcarbamoyl)- piperidin-1-yl]pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-fluoropiperidin-1- yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (4-methoxypiperidin-1- yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5[2-[(3-chloro-4- fluorophenyl)amino]-4- (3-hydroxypyrrolidin-1- yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2-methylpyrrolidin-1- yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- (2,5-dimethylpyrrolidin- 1-yl)pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[4-(azetidin-1-yl)-2- [(3-chloro-4- fluorophenyl)amino]- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-[4-(azepan-1-yl)-2-[(3- chloro-4- fluorophenyl)amino]- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-[2-[(3-chloro-4- fluorophenyl)amino]-4- [(4- hydroxycyclohexyl)- amino]pyrimidin-5- yl]pyridine-3-carboxylic acid
5-[4-(4- acetamidopiperidin-1-yl)- 2-[(3-chloro-4- fluorophenyl)amino]- pyrimidin-5-yl]pyridine-3- carboxylic acid
5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(1H-imidazol-4- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylic acid
5-(4-{[2-(1H- benzimidazol-2- yl)ethyl]amino}-2-[(3- chloro-4- fluorophenyl)amino]- pyrimidin-5-yl)pyridine-3- carboxylic acid
5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(1H-imidazol-1- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylic acid
5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(1H-pyrazol-1- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylic acid
5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(1H-pyrazol-4- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylic acid
5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(4-methyl-1,3- thiazol-5- yl)ethyl]amino}pyrimidin- 5-yl)pyridine-3- carboxylic acid
5-(2-[(3-chloro-4- fluorophenyl)amino]-4- {[2-(4-methylpiperazin- 1-yl)ethyl]amino} pyrimidin-5-yl)pyridine- 3-carboxylate acid
(2E)-3-[3-(2-[(3-chloro- 4-fluorophenyl)amino]-4- {[2-(1H-imidazol-4- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoic acid
(2E)-3-[3-(4-{[2-(1H- benzimidazol-2- yl)ethyl]amino}-2-[(3- chloro-4-fluorophenyl) amino]pyrimidin-5- yl)phenyl]prop-2-enoic acid
(2E)-3-[3-(2-[(3-chloro- 4-fluorophenyl)amino]-4- {[2-(1H-imidazol-1- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoic acid
(2E)-3-[3-(2-[(3-chloro- 4-fluorophenyl)amino]-4- {[2-(1H-pyrazol-1- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoic acid
(2E)-3-[3-(2-[(3-chloro- 4-fluorophenyl)amino]-4- {[2-(1H-pyrazol-4- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoic acid
(2E)-3-[3-(2-[(3-chloro- 4-fluorophenyl)amino]-4- {[2-(4-methyl-1,3- thiazol-5- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoic acid
(2E)-3-[3-(2-[(3-chloro- 4-fluorophenyl)amino]-4- {[2-(4-methylpiperazin- 1- yl)ethyl]amino}pyrimidin- 5-yl)phenyl]prop-2- enoic acid
5-(4-(3-(1H- benzo[d]imidazol-2- yl)propylamino)-2-(3- chloro-4- fluorophenylamino)- pyrimidin-5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- (2,6- dimethylmorpholino)- pyrimidin-5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (5-methyl-1H-pyrazol-4- yl)propylamino)pyrimidin- 5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- (piperidin-1- yl)pyrimidin-5- yl)nicotinic acid
5-(4-(4-acetylpiperazin- 1-yl)-2-(3-chloro-4- fluorophenylamino)- pyrimidin-5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (5-methylpieprazine-2- carboxamido)propyl- amino)pyrimidin-5- yl)nicotinic acid
(R)-5-(2-(3-chloro-4- fluorophenylamino)-4- (tetrahydrofuran-3- ylamino)pyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- (pyrrolidin-1- yl)pyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-imidazol- 5- yl)methylamino)pyrimidin- 5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-pyrazol-4- yl)methylamino)pyrimidin- 5-yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- (1,3-dimethoxypropan-2- ylamino)pyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(4- (2- methoxyethyl)piperazin- 1-yl)pyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(4- methylpiperazin-1- yl)pyrimidin-5- yl)nicotinic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (2,6- dimethylmorpholin-)- pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- (cyclopropanecarbonyl)- piperazin-1-yl)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(4-(4- acetylpiperazin-1-yl)-2- (3-chloro-4- fluorophenylamino)- pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(4-(3-(1H- benzo[d]imidazol-2- yl)propylamino)-2-(3- chloro-4- fluorophenylamino)- pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- (dimethylcarbamoyl)- piperazin-1-yl)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (5-methylpyrazine-2- carboxamido)propylamino)- pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (pyrrolidin-1- yl)pyrimidin-5- yl)phenyl)acrylic acid
(R,E)-3-(3-(2-(3-chloro- 4-fluorophenylamino)-4- (tetrahydrofuran-3- ylamino)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-imidazol- 5- yl)methylamino)pyrimidin- 5-yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (piperidin-1- yl)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- ((1-methyl-1H-pyrazol-4- yl)methylamino)pyrimidin- 5-yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4- (1,3-dimethoxypropan-2- yl)amino)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- (2- methoxyethyl)piperazin- 1-yl)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- methylpierazin-1- yl)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(4- (methylsulfonyl)piperazin- 1-yl)pyrimidin-5- yl)phenyl)acrylic acid
6-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)-1-(2-methoxyethyl)- 4-oxo-1,4- dihydroquinone-3- carboxylic acid
6-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)-1-(2- methoxyethyl)-4-oxo- 1,4-dihydroquinoline-3- carboxylic acid
6-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)quinoline-3- carboxylic acid
5-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)benzo[b]thiophene-2- carboxylic acid
5-(2-(3-choloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5- yl)benzo[b]thiophene-2- carboxylic acid
The following examples were prepared using the general method described above for Example 214 using 1N sodium hydroxide (1-2 equivalents), dioxane or THF as solvent and the starting material (SM) indicated.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[4-(pyridin-4-yl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-(4-chloro-1H- pyrazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-(2-methyl-1H- imidazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-(1H-pyrrol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[4-(pyridin-4-yl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2- enoic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]- 4-(4-chloro-1H- pyrazol-1- yl)pyrimidin-5- yl}phenyl)prop-2- enoic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]- 4-(2-methyl-1H- imidazol-1- yl)pyrimidin-5- yl}phenyl)prop-2- enoic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]- 4-(1H-pyrrol-1- yl)pyrimidin-5- yl}phenyl)prop-2- enoic acid
Ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(3,5-dimethyl-1H-pyrazol-1-yl)pyrimidin-5-yl}pyridine-3-carboxylate (Example 133, 100 mg, 0.22 mmol) was dissolved in tetrahydrofuran (1 ml) and treated with a suspension of aqueous barium hydroxide (35 mg, 0.88 mmol) in water (1 ml). The mixture was allowed to stir at room temperature for 4 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl and the precipitate that formed was filtered, washed with water, and dried to yield the title compound (65 mg).
MS(ES): 439 (M+1) for C21H16ClFN6O2.
1H NMR (400 MHz, DMSO-d6) δ 1.92 (s, 3H), 2.36 (s, 3H), 6.07 (s, 1H), 7.41 (t, J=9.08 Hz, 1H), 7.62-7.67 (m, 1H), 7.88 (t, J=2.12 Hz, 1H), 8.09 (dd, J=2.48, 6.74 Hz, 1H), 8.37 (d, J=1.80 Hz, 1H), 8.83 (s, 1H), 8.91 (d, J=1.88 Hz, 1H), 10.28 (s, 1H).
The following examples were prepared using the general method described above for Example 316 using barium hydroxide (2-4 equivalents), dioxane or THF and the starting material (SM) indicated.
5-{4-(2H-1,2,3-triazol-2- yl)-2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl}pyridine-3- carboxylic acid
5-{4-(1H-benzotriazol-1- yl)-2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
(2E)-3-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- (3,5-dimethyl-1H- pyrazol-1-yl)pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- (2H-1,2,3-triazol-2- yl)pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{4-(1H- benzotriazol-1-yl)-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}phenyl) prop-2-enoic acid
(2E)-3-(3-{4-(1H- benzotriazol-1-yl)-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}phenyl) prop-2-enoic acid and
(2E)-3-(3-{4-(2H- benzotriazol-2-yl)-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}phenyl) prop-2-enoic acid
To a solution of ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(4,5-dichloro-1H-imidazol-1-yl)pyrimidin-5-yl}pyridine-3-carboxylate Example 133 (289 mg, 0.57 mmol) in 1,2-dichloroethane, was added trimethyltin hydroxide (10 eq, 5.7 mmol) and the mixture was heated to 80-85° C. until TLC analysis indicated a complete reaction. After completion of the reaction, the mixture was concentrated in vacuum and the residue was taken up in ethyl acetate (˜15 mL). The organic layer was washed with 5% HCl, brine and dried over anhydrous Na2SO4. Removal of the solvent afforded the crude carboxylic acid. The crude compound was purified by RP-HPLC (Kromosil C18 column) to provide (150 mg) of pure 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(4,5-dichloro-1H-imidazol-1-yl)pyrimidin-5-yl}pyridine-3-carboxylic acid.
MS(ES): 479 (M+1) for C19H10Cl3FN6O2.
1H NMR (400 MHz, DMSO-d6): δ 7.42 (t, J=9.12 Hz, 1H), 7.69 (ddd, J=2.76, 4.04, 9.05 Hz, 1H), 7.97 (br s, 1H), 8.05 (ddd, J=1.92, 6.48 Hz, 1H), 8.12 (br s, 1H), 8.60 (br s, 1H), 9.01 (br s, 1H), 9.04 (s, 1H), 10.62 (s, 1H), 13.59 (br s, 1H).
The following examples were prepared using the general method described above for (Example 327) using trimethyltin hydroxide and the starting material (SM) indicated.
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [4-(trifluoromethyl)- 1H-imidazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-1,2,3-triazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-[1,2,3]triazolo[4,5- b]pyridin-1- yl)pyrimidin-5- yl}pyridine-3- carboxylic acid and
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (2H-[1,2,3]triazolo[4,5- b]pyridin-2- yl)pyrimidin-5- yl}pyridine-3- carboxylic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (4,5-dichloro-1H- imidazol-1- yl)pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- [4-(trifluoromethyl)- 1H-imidazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (1H-1,2,3-triazol-1- yl)pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4- (2H-[1,2,3]triazolo[4,5- b]pyridin-2- yl)pyrimidin-5- yl}phenyl)prop-2-enoic acid
The following examples were prepared using the general method described for Example 1 using the starting materials (SM) indicated.
5-(2-(3,4- difluorophenyl amino)-4-(3- (dimethyl amino)propylamino) pyrimidin-5- yl)thiophene-2- carboxylic acid
(E)-3-(3-(2-(3,4- difluoro phenylamino)-4-(3- (dimethylamino) propylamino) pyrimidin- 5-yl)phenyl)acrylic acid
5-(2-(3-cyano-4- methyl phenylamino)-4-(3- (dimethylamino) propyl amino)pyrimidin-5- yl) thiophene-2- carboxylic acid
(E)-3-(3-(2-(3-cyano- 4- methylphenylamino)- 4-(3-(dimethylamino) propylamino) pyrimidin-5-yl) phenyl)acrylic acid
5-(2-(3,5-dichloro- phenylamino)-4-(3- (dimethylamino) propyl amino)pyrimidin-5- yl) thiophene-2- carboxylic acid
(E)-3-(3-(2-(3,5- dichloro phenylamino)-4-(3- (dimethylamino) propyl amino)pyrimidin-5- yl) phenyl)acrylic acid
5-(2-(3,5-bis(trifluoro methyl)phenylamino)- 4-(3- (dimethylamino) propyl amino)pyrimidin-5- yl) thiophene-2- carboxylic acid
5-(2-(4-chloro-2- methoxy-5- methylphenylamino)- 4-(3- (dimethylamino) propyl amino)pyrimidin-5- yl) thiophene-2- carboxylic acid
(E)-ethyl 3-(3-(2-(4- chloro-2-methoxy-5- methyl phenylamino)-4-(3- (dimethylamino) propyl amino)pyrimidin-5- yl) phenyl)acrylate
N2-(3,5-dimethoxy phenyl)-N4-(3- (dimethyl amino)propyl)-5,5′-bi pyrimidin-2,4- diamine
5-(2-(3,5-dimethoxy- phenylamino)-4-(3- (dimethylamino) propy amino)pyrimidin-5- yl) thiophene-2- carboxylic acid
5-{4-[3- (dimethylamino) propylamino]-2-[3- methoxy-5- (trifluoromethyl) phenylamino] pyrimidin-5-yl}thiophene- 2-carboxylic acid
5-(2-(4-chloro-2,5- dimethoxyphenyl- amino)-4-(3- (dimethylamino) propylamino)pyrimidin- 5-yl)thiophene-2- carboxylic acid
(E)-3-(3-(4-(2,6- dimethylmorpholino)- 2-(3-methoxy-5- (trifluoro methyl)phenylamino) pyrimidin-5- yl)phenyl) acrylic acid
4-(2,6-dimethyl morpholino)-2′- methoxy-N-(3- methoxy-5- (trifluoromethyl) phenyl)-5,5′-bipyrimidin- 2-amine
(E)-3-(3-(2-(3,4- difluoro phenylamino)-4- morpholinopyrimidin- 5-yl) phenyl)acrylic acid
(E)-3-(3-(2-(3,5- dimethoxy phenylamino)-4- morpholino pyrimidin-5- yl)phenyl) acrylic acid
N-(3,4- difluorophenyl)-4- morpholino-5,5′- bipyrimidin-5-amine
(E)-3-(3-(2-(3,5- dimethoxyphenyl- amino)-4-(2-(pyridin-4- yl) ethylamino) pyrimidin-5- yl)phenyl) acrylic acid
N2-(3,5- dimethoxyphenyl)- N4-(2-(pyridin-4- yl)ethyl)-5,5′- bipyrimidine-2,4- diamine
(E)-3-(3-(2-(3- methoxy-5- (trifluoromethyl) phenyl amino)-4-(2-(pyridin- 4-yl) ethylamino) pyrimidin-5- yl)phenyl) acrylic acid
2′-methoxy-N2-(3- methoxy-5- (trifluoromethyl) phenyl)-N4-(2-(pyridin-4- yl)ethyl)-5,5′- bipyrimidine-2,4- diamine
(R,E)-3-(3-(2-(3,5- dimethoxyphenylamino)- 4- (tetrahydrofuran-3- ylamino)pyrimidin-5- yl)phenyl)acrylic acid
(R)-N2-(3,5- dimethoxyphenyl)- N4-(tetrahydrofuran- 3-yl)-5,5′- bipyrimidine-2,4- diamine
(E)-3-(3-(2-(3-chloro- 4- fluorophenylamino)- 4-(1H-imidazol-1- yl)pyrimidin-5- yl)phenyl)acrylic acid
To a stirred solution of 3-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[3-(dimethylamino)propyl]amino}pyrimidin-5-yl)benzoic acid (Example 31, 52 mg, 0.12 mmol) and triethylamine (0.057 ml, 0.4 mmol) in DMF (1.5 ml) under ambient conditions was added O-(7-azabenzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HATU; 44 mg, 0.12 mmol) as a solid. The mixture was stirred for 10 minutes; to it was then added methoxylamine hydrochloride (8 mg, 0.12 mmol) as a solid. The mixture was stirred until complete conversion was seen by LCMS. The reaction mixture was diluted with 1-3 mL water while stiffing continued; a light pink precipitate formed. Stirring continued for several minutes, and the vessel was then transferred to an ice bath for 10 minutes. 3-(2-(3-Chloro-4-fluorophenylamino)-4-(3-(dimethylamino)propylamino)pyrimidin-5-yl)-N-methoxybenzamide was collected (22 mg) and characterized by LCMS and 1H NMR.
MS: ES+ 473 for C23H26ClFN6O2
1H NMR (300 MHz, DMSO-D6) δ ppm 1.84-2.01 (m, 2H) 2.76 (d, J=4.71 Hz, 6H) 2.97-3.12 (m, 2H) 3.35-3.49 (m, 2H) 3.72 (s, 3H) 7.42 (t, J=9.04 Hz, 1H) 7.50-7.64 (m, 4H) 7.76-7.84 (m, 2H) 7.89 (s, 1H) 8.07 (dd, J=6.78, 2.64 Hz, 1H) 9.50 (s, 1H) 10.22 (s, 1H) 11.84 (s, 1H)
The following examples were prepared using the general HATU coupling method described above for Example 360 using the starting materials (SM) indicated.
3-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl)-N- ethylbenzamide
N-benzyl-3-(2-(3-chloro- 4-fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl) benzamide
4-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl)-N- ethylbenzamide
4-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl)-N,N- dimethylbenzamide
N-benzyl-4-(2-(3-chloro- 4-fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl) benzamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl)-N,N- dimethylthiophene-2- carboxamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl)-N- ethylthiophene-2- carboxamide
N-benzyl-5-(2-(3-chloro- 4-fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl) thiophene-2- carboxamide
(5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl) thiophen-2-yl) (piperidin-1-yl) methanone
(5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl)thiophen- 2-yl) (3,3-difluoro- piperidin-1-yl) methanone
N-benzyl-5-(2-(3- chloro-4- fluorophenylamino)-4- (3-(dimethylamino) propylamino) pyrimidin-5-yl) nicotinamide
(E)-3-(3-(2-(3- methoxy-5- (trifluoromethyl)phenyl amino)-4-(2-pyridin-4- yl) ethylamino)pyrimidin- 5-yl) phenyl)-N-methyl acrylamide
(E)-3-(3-(2-(3- methoxy-5- (trifluoromethyl)phenyl amino)-4-(2-(pyridin-4- yl) ethylamino)pyrimidin- 5-yl) phenyl)acrylamide
(E)-N-methoxy-3-(3- (2-(3-methoxy-5- (trifluoromethyl)phenyl amino)-4-(2-(pyridin-4- yl) ethylamino)pyrimidin- 5-yl)phenyl)acrylamide
(E)-3-(3-(2-(3-chloro- 4-fluorophenylamino)- 4- morpholinopyrimidin- 5-yl)phenyl)-1H- methylacrylamide
(E)-3-(3-(2-(3-chloro- 4-fluorophenylamino)- 4- morpholinopyrimidin- 5-yl)phenyl)-N- methoxyacrylamide
A solution of acetic anhydride (0.012 ml, 0.13 mmol) was added to N′-(3-aminopropyl)-N-(3-chloro-4-fluorophenyl)-5-pyrimidin-5-ylpyrimidine-2,4-diamine hydrochloride (Example 211, 53 mg, 0.13 mmol), triethylamine (0.054 ml, 0.39 mmol) and methylene chloride (1.5 ml) under nitrogen. The resultant mixture was stirred for 1 h, then concentrated under vacuum. The residue was chromatographed using 1-10% methanol/methylene chloride to yield the title compound (38 mg).
MS(ES): 416 (M+1) for C19H19ClFN7O
1H NMR (300 MHz, DMSO-d6) δ ppm 1.53-1.73 (m, 2H) 1.75 (s, 3H) 3.05 (q, J=6.03 Hz, 2H) 3.21-3.49 (m, 2H) 7.41 (t, J=9.04 Hz, 1H) 7.49-7.66 (m, 1H) 7.68-7.98 (m, 3H) 8.06 (dd, J=6.78, 2.64 Hz, 1H) 8.83 (s, 2H) 9.23 (s, 1H) 10.05 (s, 1H).
The following examples were prepared by the general method described above for Example 377 using the starting materials (SM) indicated.
N-(3-(2-(3-chloro-4- fluorophenylamino)- 5,5′-bipyrimidin-4- ylamino)propyl) methanesulfonamide
Intermediate 137 (1 eq) was suspended in a suitable solvent (e.g. acetonitrile, dioxane, or ethanol) (20 vol) and treated with the corresponding aniline (1 eq). The reaction was then treated with 4 N HCl (5 vol) in dioxane and refluxed under nitrogen. The reaction was monitored by TLC and then cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to afford the product. The compounds in the below table were prepared using this method with the specified starting material and solvent.
aacetonitrile
bethanol
cdioxane
A suspension of Intermediate 140 (1.3 mmol, 0.5 g), 3-(ethoxycarbonyl)pyridine-5-boronic acid pinacolester (1.4 mmol, 0.4 g), tris(dibenzyledeneacetone)dipalladium(0) (0.4 mmol, 0.19 g), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (0.13 mmol, 0.12 g) and sodium carbonate (1.3 mmol, 0.146 g) in acetonitrile/water (10 mL:3 mL) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate (50 mL) and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent to yield Example 385 (0.2 g).
MS(ES): 442.2 (M+1) for C22H21F2N5O3.
1H-NMR (400 MHz, DMSO-d6): δ 1.35 (q, J=7.08 Hz, 3H), 3.23 (d, J=3.76 Hz, 4H), 3.57 (d, J=3.64 Hz, 4H), 4.37 (q, J=7.12 Hz, 2H), 6.74 (t, J=2.24 Hz, 1H), 7.54 (d, J=10.12 Hz, 2H), 8.22 (d, J=2.84 Hz, 1H), 8.40 (t, J=1.96 Hz, 1H), 8.94 (d, J=2.04 Hz, 1H), 9.01 (d, J=1.80 Hz, 1H), 9.95 (s, 1H).
A suspension of Intermediate 144 (1.3 mmol, 0.5 g), 3-(ethoxycarbonyl)pyridine-5-boronic acid ester (1.4 mmol, 0.4 g), tris(dibenzyledeneacetone)dipalladium(0) (0.4 mmol, 0.19 g), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (0.13 mmol, 0.12 g) and sodium carbonate (1.3 mmol, 0.146 g) in acetonitrile/water (20 mL:5 mL) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate (50 mL) and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent to yield Example 386 (0.46 mmol, 0.2 g, 33%).
MS(ES): 433 (M) for C24H27N5O3.
1H-NMR (400 MHz, DMSO-d6): δ 1.34 (t, J=7.08 Hz, 3H), 2.22 (s, 6H), 3.21 (t, J=4.48 Hz, 4H), 3.56 (t, J=4.16 Hz, 4H), 4.37 (q, J=7.08 Hz, 2H), 6.58 (s, 1H), 7.40 (s, 2H), 8.15 (s, 1H), 8.38 (t, J=2.12 Hz, 1H), 8.93 (d, J=2.2 Hz, 1H), 8.98 (d, J=1.96 Hz, 1H), 9.39 (s, 1H).
To a solution of carboxylic acid ester derivative (0.46 mmol) in tetrahydrofuran (5 mL) and water (5 mL), 1 N aq. sodium hydroxide (1.84 mmol, 1.84 ml) was added. The reaction was allowed to stir at room temperature for 2 h. After completion of reaction, the reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried under vacuo to yield the desired 5-(4-Morpholin-4-yl-2-arylamino-pyrimidin-5-yl)-nicotinic acid. The compounds in the below table were prepared using this procedure and the specified starting material.
Intermediate 145 (1 eq) was suspended in acetonitrile/ethanol and treated with corresponding aniline (1 eq). The reaction was then treated with 4 N HCl (3 vol) in dioxane and refluxed under nitrogen for 5 hours. The mixture was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to afford the product. The compounds in the below table were prepared using this procedure and the specified starting material and solvent.
dacetonitrile
eethanol
A suspension of the 5-bromopyrimidine derivative (1 eq), ethyl-3-borono cinnamate (1.1 eq), tris(dibenzyledeneacetone)dipalladium(0) (30 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (10 mol %) and sodium carbonate (1 eq) in acetonitrile/water (20:5 vol) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate (30 vol) and the organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column chromatography using petroleum ether:EtOAc (7:3) as an eluent to yield the product. The compounds in the below table were prepared using this method and the specified starting material.
Ester compound (0.43 mmol, 0.2 g) was dissolved in tetrahydrofuran (5 mL), treated with 1 N aq. sodium hydroxide or Barium hydroxide (1.72 mmol) and was heated at 60° C. for 24 h. The reaction mixture was then carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried under vacuo to yield the product. The compounds in the below table were prepared using this procedure and the starting material and base specified.
fNaOH
gBa(OH)2
A suspension of 5-bromo-N-(4-fluoro-3-nitrophenyl)-4-morpholin-4-ylpyrimidin-2-amine Intermediate 150 (0.87 mmol, 0.35 g), (4,4,5,5-Tetramethyl-[1,3,2]dioxaborolan-2-yl)-nicotinic acid ethyl ester (0.92 mmol, 0.25 g), tris(dibenzylideneacetone)dipalladium(0) (10 mol %, 0.087 mmol, 80 mg), XPHOS (30 mol %, 0.26 mmol, 125 mg) and sodium carbonate (0.87 mmol, 92 mg) in acetonitrile/water (20 mL:5 mL) was degassed and heated to 90° C. for 30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture was taken in EtOAc (30 mL). It was then washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude material was purified by silica gel column chromatography. The product eluted with CHCl3:MeOH (98:2) eluent mixture. The title compound was obtained (0.2 g).
MS (ES): 469 (M+1) for C22H21FN6O5.
1H-NMR (400 MHz, DMSO-d6): δ 1.35 (t, J=7.04 Hz, 3H), 3.24-3.26 (m, 4H), 3.55-3.58 (m, 4H), 4.37 (q, J=7.08 Hz, 2H), 7.52 (dd, J=9.16, 11.14 Hz, 1H), 7.90 (dt, J=3.20, 6.10 Hz, 1H), 8.21 (s, 1H), 8.39 (t, J=2.08 Hz, 1H), 8.94 (d, J=2.24 Hz, 1H), 8.95-8.96 (m, 1H), 9.01 (d, J=1.92 Hz, 1H), 10.04 (br s, 1H).
A suspension of 5-bromo-N-(4-fluoro-3-nitrophenyl)-4-morpholin-4-ylpyrimidin-2-amine Intermediate 150 (0.87 mmol, 0.35 g), ethyl boronocinnamate (0.92 mmol, 0.203 g), tris(dibenzylideneacetone)dipalladium(0) (10 mol %, 0.087 mmol, 80 mg), XPHOS (30 mol %, 0.26 mmol, 125 mg) and sodium carbonate (0.87 mmol, 92 mg) in acetonitrile/water (20 mL:5 mL) was degassed and heated to 90° C. for 30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture was taken in EtOAc (30 mL). It was then washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude material was purified by silica gel column chromatography. The product eluted with Hexane:Ethyl Acetate (90:10) eluent mixture. The title compound was obtained (0.2 g).
MS (ES): 494 (M+1) for C25H24FN5O5.
1H-NMR (400 MHz, DMSO-d6): δ 1.25 (t, J=7.08 Hz, 3H), 3.27-3.28 (m, 4H), 3.55-3.57 (m, 4H), 4.19 (q, J=7.08 Hz, 2H), 6.73 (d, J=16.04 Hz, 1H), 7.46-7.55 (m, 3H), 7.67 (d, J=7.36 Hz, 1H), 7.69 (d, J=16.08 Hz, 1H), 7.83 (s, 1H), 7.88-7.91 (m, 1H), 8.11 (s, 1H), 8.96 (dd, J=2.80, 6.86 Hz, 1H), 9.94 (s, 1H).
To a suspension of 5-(2-Chloro-4-morpholin-4-yl-pyrimidin-5-yl)-nicotinic acid ethyl ester Intermediate 152 (0.6 mmol, 1 eq.) taken in n-BuOH/acetonitrile/dioxane (10 mL) was added the corresponding aniline. The reaction mixture was then treated with 4 N HCl in dioxane (2 mL) and refluxed at 100° C. for 1.5 h. The reaction mixture was cooled to room temperature, diluted with diethyl ether, the solid filtered and dried to yield the corresponding nicotinic acid ethyl ester. The compounds in the table below were prepared using this general procedure and the starting material and solvent specified.
an-butanol
bacetonitrile
cdioxane
To a suspension of 3-[3-(2-Chloro-4-morpholin-4-yl-pyrimidin-5-yl)-phenyl]-acrylic acid ethyl ester Intermediate 153 (1 eq.) taken in n-BuOH/acetonitrile/dioxane was added the corresponding aniline. The reaction mixture was then treated with 4 N HCl in dioxane and refluxed at 100° C. for 1.5 h. The reaction mixture was cooled to room temperature, diluted with diethyl ether and the solid was filtered and dried to afford the corresponding cinnamic acid ethyl ester.
The compounds in the below table were prepared using this general procedure with the starting material and solvent specified.
an-butanol
bacetonitrile
cdioxane
Ester compound (1 eq, 0.22 mmol) was dissolved in a mixture of tetrahydrofuran (1 mL) and water (1 mL) and treated with sodium hydroxide (35 mg, 1N, 0.88 mmol). The reaction was allowed to stir at room temperature for 1 hr. After completion of reaction, the reaction mixture was carefully acidified with 1 N HCl. The solid that precipitated was filtered off, washed with water and dried under vacuum.
The compounds in the below table were prepared using this general procedure and the specified starting material.
Ester compound (1 eq, 0.22 mmol) was dissolved in a mixture of tetrahydrofuran (1 mL) and water (1 mL) and treated with sodium hydroxide (35 mg, 1N, 0.88 mmol). The reaction was allowed to stir at room temperature for 1 hr. After completion of reaction, the reaction mixture was carefully acidified with 1 N HCl. The solid that precipitated was filtered off, washed with water and dried under vacuum.
The compounds in the below table were prepared using this general procedure and the specified starting material.
To 3-{3-[2-(3-Cyano-4-fluoro-phenylamino)-4-morpholin-4-yl-pyrimidin-5-yl]-phenyl}-acrylic acid ethyl ester (Example 428) (0.12 g, 0.25 mmol) in THF (1 mL) and water (0.2 mL), sodium hydroxide (0.5 mmol, 20 mg) was added and the mixture was heated at 60° C. overnight. The reaction mixture was then acidified using 1.5 N HCl and the solid obtained was filtered, washed with water and dried. LCMS analysis indicated that the solid was a 17:3 mixture of the title compound and the corresponding carboxamide resulting from nitrile hydrolysis. A pure sample of the title compound was produced by converting the carboxamide to the nitrile using the procedure below.
The mixture obtained as above (0.07 g) was taken in POCl3 (1 mL) and heated at 100° C. for 3 h. The reaction mixture was cooled and concentrated under vacuo. Crushed ice was then added to the slurry to obtain an off-white solid, which was filtered, further washed with water and dried to give the pure title compound (0.06 g).
MS(ES): 446 (M+1) for C24H20FN5O3.
400 MHz, DMSO-d6: δ 3.34 (br s, 4H), 3.55 (br s, 4H), 6.63 (d, J=16.04 Hz, 1H), 7.49-7.56 (m, 3H), 7.64 (d, J=16.04 Hz, 1H), 7.69 (d, J=6.72 Hz, 1H), 7.78 (s, 1H), 7.95 (br s, 1H), 8.06 (s, 1H), 8.21 (m, 1H), 10.36 (br s, 1H).
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-morpholin-4-ylpyrimidin-2-amine [Intermediate 146] (0.56 mmol, 220 mg), 2:1 mixture of boronic acid and pinacol boronate, Intermediate 155 (52 mg), tris(dibenzylideneacetone)dipalladium(0) (10 mol %, 0.054 mmol, 52 mg), 2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (30 mol %, 0.17 mmol, 81 mg) and sodium carbonate (0.56 mmol, 60 mg) in 4:1 acetonitrile-water (10 mL) was degassed and then heated to 90° C. for 30 minutes. Solvent was removed in vacuo, resulting residue was redissolved in ethyl acetate (20 mL), filtered through a bed of celite and washed with water (2×10 mL). The filtrate was then acidified with 1.5N HCl, and the precipitate formed was filtered, washed with water and dried to yield the title compound as a brown solid (0.16 mmol, 80 mg, 29%).
MS(ES): 497 (M+1) for C24H18ClFN4O5.
400 MHz, DMSO-d6: δ 3.23 (br s, 4H), 3.55 (br s, 4H), 7.25-7.30 (m, 1H), 7.40 (t, J=8.96 Hz, 1H), 7.54-7.58 (m, 1H), 7.62 (d, J=8.24 Hz, 1H), 7.91-7.93 (m, 1H), 7.97-8.00 (m, 2H), 9.92 (s, 1H), 9.98 (br s, 1H).
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[alkylamino]pyrimidin-2-amine (1 eq), (2-methoxypyrimidin-5-yl)boronic acid (1.05 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (30 mol %) and sodium carbonate (1.1 eq) in acetonitrile/water (4:1) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate (25 mL); organic layer was separated, dried over sodium sulfate, filtered and concentrated. The resulting residue was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent to afford the product.
The compounds in the below table were prepared using this method and the specified starting material.
N2-(3-chloro-4-fluorophenyl)-2′-methoxy-N4-[2- (pyridin-3-yl)ethyl]-5,5′-bipyrimidin-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-2′-methoxy-N4-[2- (pyridin-4-yl)ethyl]-5,5′-bipyrimidine-2,4-diamine
To a suspension of NaH (2.2 mmol, 60% dispersion in oil) in NMP, 2-(1H-Imidazol-4-yl)-ethylamine (1 eq) was added and stirred for 30 min. N-(3-chloro-4-fluorophenyl)-2′-methoxy-4-(methylsulfonyl)-5,5′-bipyrimidin-2-amine Intermediate 156 (1 eq) in NMP was added to the reaction mixture drop wise and stirred at RT for overnight. Water was added to the reaction mixture; the solid thus obtained was filtered and purified by column chromatography using chloroform-methanol to yield the title compound.
The compounds in the below table were prepared using this method and the specified starting material.
N2-(3-chloro-4-fluorophenyl)-N4-[2-(1H-imidazol-4- yl)ethyl]-2′-methoxy-5,5′-bipyrimidine-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-2′-methoxy-N4-((3- methylpyridin-4-yl)methyl)-5,5′-bipyrimidine-2,4- diamine
N2-(3-chloro-4-fluorophenyl)-N4-(3,5-dimethoxybenzyl)- 2′-methoxy-5,5′-bipyrimidin-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-2′-methoxy-N4-((6- methoxypyridin-3-yl)methyl)-5,5′-bipyrimidine-2,4- diamine
(4-((2-(3-chloro-4-fluorophenylamino)-2′-methoxy- 5,5′-bipyrimidin-4-ylamino)methyl)piperidin-1- yl)(cyclopropyl)methanone
4-((2-(3-chloro-4-fluorophenylamino)-2′-methoxy-5,5′- bipyrimidin-4-ylamino)methyl)-1-ethylpyrrolidin- 2-one
N2-(3-chloro-4-fluorophenyl)-N4-((1-ethylpiperidin-4- yl)methyl)-2′-methoxy-5,5′-bipyrimidine-2,4-diamine
N2-(3-chloro-4-fluorophenyl)-N4-((1,5-dimethyl-1H- pyrazol-4-yl)methyl)-2′-methoxy-5,5′-bipyrimidine- 2,4-diamine
N2-(3-chloro-4-fluorophenyl)-2′-methoxy-N4-((5- methylfuran-2-yl)methyl)-5,5′-bipyrimidine-2,4-diamine
To a suspension of NaH (2.2 mmol, 60% dispersion in oil) in DMF, 2-(1H-Imidazol-4-yl)-ethylamine (1 eq) was added and stirred for 30 minutes. N-(3-chloro-4-fluorophenyl)-4-methylsulfonyl-5-pyrimidin-5-ylpyrimidin-2-amine Intermediate 123 (1 eq) in DMF was added to the reaction mixture drop wise and stirred at room temperature 16 hours. The reaction mixture was added to water and stirred for 15 min. The precipitated solid was filtered, washed with water and dried to afford the crude product. It was further purified by flash chromatography using chloroform:methanol (9:1) to get the pure product.
N2-(3-chloro-4-fluorophenyl)-N4-[2-(1H- imidazol-4-yl)ethyl]-5,5′-bipyrimidine- 2,4-diamine
To a solution of ester (1 eq) in THF (2 mL) was added aqueous ammonia solution (20 mL) and the mixture was heated to 60° C. in a sealed tube for 16-24 h. The reaction mixture was cooled to room temperature, the solid thus obtained was filtered, washed with water and dried to give product.
Compounds in the below table were prepared using this general procedure and the specified starting material.
5-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[2- (1H-imidazol-4-yl)ethyl]amino}pyrimidin-5-yl)- pyridine-3-carboxamide
5-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[2- (pyridin-3-yl)ethyl]amino}pyrimidin-5-yl)- pyridine-3-carboxamide
5-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[2- (pyridin-4-yl)ethyl]amino}pyrimidin-5-yl)- pyridine-3-carboxamide
Synthesis of N-Methoxy Carboxamides from Carboxylic Acids
To a mixture of (Example 257) (1 eq), triethylamine (3 eq) and methoxylamine hydrochloride (1.2 eq) in DMF was added HOBt (5 mol %), EDCI (1.2 eq) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for overnight. Water was added and the precipitate thus formed was filtered and dried to yield Example 475.
To a mixture of (Example 229) (1 eq), triethylamine (4 eq) and methoxylamine hydrochloride (1.2 eq) in EtOAc:DCM (1:1) was added T3P (50%, 1.5 eq) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for overnight. Reaction mixture was then diluted with dichloromethane (12 mL), washed the dichloromethane solution successively with water (2×50 mL), 10% aq sodium bicarbonate solution (50 mL) and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and dried to yield Example 476.
To a mixture of (Example 230) (1 eq), triethylamine (3.5 eq) and methoxylamine hydrochloride (1.0 eq) in DMF was added BOP (1.2 eq) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 3-4 h. Water was added followed by extraction with EtOAc. The organic layer was dried over sodium sulphate, filtered and concentrated. The resulting residue was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent to afford Example 477.
The compounds in the below table were prepared following the methods described above as indicated with the starting material listed.
5-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[2-(1H-imidazol-4- yl)ethyl]amino}pyrimidin-5-yl)-N-methoxypyridine-3-carboxamide
5-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[2-(pyridin-3- yl)ethyl]amino}pyrimidin-5-yl)-N-methoxypyridine- 3-carboxamide
5-(2-[(3-chloro-4-fluorophenyl)amino]-4-{[2-(pyridin-4- yl)ethyl]amino}pyrimidin-5-yl)-N-methoxypyridine- 3-carboxamide
aMethod A
bMethod B
cMethod C
A suspension of Intermediate 146 (1 eq), boronic acid (1.05 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (30 mol %) and sodium carbonate (2 eq) in acetonitrile/water (4:1) was heated to 90° C. for 30 minutes. The reaction mixture was diluted with ethyl acetate; organic layer was separated, dried over sodium sulfate, filtered and concentrated. The resulting residue was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent to afford the product.
The compounds in the below table were prepared using this general method and the specified starting material.
4-[(4-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4- yl)pyrimidin-5-yl}phenyl)amino]-4-oxobutanoic acid
2-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4- yl)pyrimidin-5-yl}furan-3-carboxylic acid
ethyl (3-{2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidin-5-yl}phenoxy)acetate
ethyl (4-{2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidin-5-yl}phenoxy)acetate
4-[(3-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin- 4-yl)pyrimidin-5-yl}phenyl)amino]-4-oxobutanoic acid
4-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4- yl)pyrimidin-5-yl}thiophene-2-carboxylic acid
3-[(tert-butoxycarbonyl)amino]-5-{2-[(3-chloro-4- fluorophenyl)amino]-4-(morpholin-4-yl)pyrimidin-5- yl}benzoic acid
(4-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4- yl)pyrimidin-5-yl}-1H-pyrazol-1-yl)acetic acid
methyl 3-{2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidin-5-yl}-5-nitrobenzoate
3-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin- 4-yl)pyrimidin-5-yl}benzoic acid
Starting ester (1 eq, 0.22 mmol) was dissolved in a mixture of tetrahydrofuran (1 mL) and water (1 mL) and treated with 1 N sodium hydroxide (4 eq, 0.88 mmol) and allowed to stir at room temperature for 16 hours. Reaction mixture was then carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the product.
The compounds in the below table were prepared using this general method and the specified starting material.
(3-{2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidin-5-yl}phenoxy)acetic acid
(4-{2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidin-5-yl}phenoxy)acetic acid
3-{2-[(3-chloro-4-fluorophenyl)amino]-4- (morpholin-4-yl)pyrimidin-5-yl}-5-nitrobenzoic acid
To 3-(tert-butoxycarbonylamino)-5-(2-(3-chloro-4-fluorophenylamino)-4-morpholinopyrimidin-5-yl)benzoic acid, Example 484 (0.25 mmol, 110 mg), HCl in dioxane (4 mL) was added and the mixture was stirred at room temperature for 16 hours. The solvent was evaporated and the residue was triturated with diethyl ether. The solid thus obtained was dried to yield the title compound.
MS (ES): 444 (M+1) for C21H19ClFN5O3.
400 MHz, DMSO-d6: δ 3.38 (br s, 4H), 3.58 (br s, 4H), 7.09 (s, 1H), 7.40-7.45 (m, 3H), 7.52-7.56 (m, 1H), 7.95 (dd, J=2.32, 6.66 Hz, 1H), 7.99 (s, 1H), 10.50 (br s, 1H).
To a mixture of methyl 4-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-2-carboxylate (Intermediate 157), 0.23 mmol, 0.1 g) and morpholine (0.28 mmol, 24 mg) in NMP (2.5 mL), was added DIPEA (0.28 mmol, 36 mg) and heated to 90° C. for 1 h. Water (3 mL) was added to the reaction mixture and the solid thus formed was filtered and dried to yield the title compound.
MS(ES): 444 (M+1) for C21H19ClFN5O3
400 MHz, DMSO-d6: δ 3.24 (t, J=4.16 Hz, 4H), 3.59 (t, J=4.20 Hz, 4H), 3.90 (s, 3H), 7.34 (t, J=9.08 Hz, 1H), 7.61-7.62 (m, 1H), 7.77 (d, J=3.60 Hz, 1H), 8.13 (dd, J=2.52, 6.68 Hz, 1H), 8.17 (br s, 1H), 8.24 (s, 1H), 8.72 (d, J=5.00 Hz, 1H), 9.81 (br s, 1H).
Methyl 4-{2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4-yl)pyrimidin-5-yl}pyridine-2-carboxylate Example 492, 0.23 mmol, 0.1 g) was dissolved in tetrahydrofuran (1 mL) and treated with aq. 1 N sodium hydroxide (0.11 mmol, 4 mg) and allowed to stir at room temperature for 1 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the title compound.
MS(ES): 428 (M−1) for C20H17ClFN5O3.
400 MHz, DMSO-d6: δ 3.25 (br s, 4H), 3.60 (br s, 4H), 7.35 (t, J=9.20 Hz, 1H), 7.63-7.65 (m, 1H), 7.75 (d, J=3.60 Hz, 1H), 8.14 (dd, J=2.00, 6.40 Hz, 1H), 8.18 (s, 1H), 8.24 (s, 1H), 8.71 (s, 1H), 9.81 (br s, 1H).
A suspension of sodium hydride (2 eq, 0.23 mmol, 5.5 mg) in NMP was cooled to 0° C. and a solution of 3-(trifluoromethyl)-1H-pyrazole (2.2 eq, 0.13 mmol, 17 mg) in NMP (1 mL) was added slowly and the reaction mixture was gradually allowed to attain room temperature. The mixture was then stirred for 30 min at room temperature. It was recooled to 0° C. and a solution of methyl 4-{2-[(3-chloro-4-fluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-2-carboxylate (Intermediate 157, 0.114 mmol, 50 mg) in DMSO (1 mL) was added slowly to the reaction mixture and stirred for 4 h. The reaction mixture was poured into ice-water (6 mL), and filtered and dried to yield the title compound.
MS(ES): 493 (M+1) for C21H13ClF4N6O2.
400 MHz, DMSO-d6: δ 3.85 (s, 3H), 7.08 (d, J=2.40 Hz, 1H), 7.44 (t, J=9.20 Hz, 1H), 7.52 (br s, 1H), 7.71-7.75 (m, 1H), 7.76 (s, 1H), 8.07 (dd, J=2.40, 6.80 Hz, 1H), 8.55 (s, 1H), 8.68 (d, J=5.20 Hz, 1H), 8.85 (s, 1H), 10.54 (br s, 1H).
To methyl 4-{2-[(3-chloro-4-fluorophenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-2-carboxylate Example 494 (0.32 mmol, 0.16 g) taken in tetrahydrofuran (1 mL) and water (1 mL), was added Lithium hydroxide monohydrate (0.64 mmol, 28 mg) at 0° C. and was gradually allowed to attain room temperature over a period of 1 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the title compound.
MS(ES): 479 (M+1) for C20H11ClF4N6O2 (Taken to the next step on the basis of LCMS).
To a solution of 4-{2-[(3-chloro-4-fluorophenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-2-carboxylic acid, Example 495 (0.38 mmol, 180 mg, 1 eq), pyridine (0.38 mmol, 30 mg, 1 eq) and di-tert-butyl dicarbonate (0.48 mmol, 107 mg, 1.3 eq) in DMSO (5 mL), was added ammonium hydrogencarbonate (0.48 mmol, 39 mg 1.26 eq) and the mixture stirred for 24 h at ambient temperature. After completion of the reaction, the reaction mixture was poured into crushed ice. The solid that was formed was filtered off and further purified by column chromatography.
MS(ES): 478 (M+1) for C20H12ClF4N7O.
N-(2-aminophenyl)-2-[(3-chloro-4-fluorophenyl)amino]-4-(morpholin-4-yl)pyrimidine-5-carboxamide Intermediate 161 (0.16 mmol, 70 mg) was dissolved in acetic acid (3 mL) and the reaction mixture was heated at 90° C. for 8 h. The solid that had precipitated out was filtered. The filtrate was basified with NaOH and extracted with EtOAc. The organic layer was washed with water, brine, dried over Na2SO4 and further purified by column chromatography using methanol:chloroform (2:98) to yield 10 mg of the title compound as a white solid.
5-(1H-benzimidazol-2-yl)-N-(3-chloro-4- fluorophenyl)-4-(morpholin-4-yl)pyrimidin- 2- amine
To a suspension of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 0.14 mmol, 50 mg) and magnesium sulphate (0.14 mmol, 16 mg) in dry acetone (2 mL) under nitrogen atmosphere, was added 4-cyanophenacyl bromide (0.14 mmol, 33 mg). The resulting mixture was stirred at reflux temperature for 3 h, concentrated and purified by silica gel column chromatography (60-120 mesh) using ethyl acetate/hexanes as eluent to afford the title compound (23 mg).
4-(2-{2-[(3-chloro-4-fluorophenyl)amino]-4-[(3- methoxypropyl)amino]pyrimidin-5-yl}- 1,3-thiazol-4-yl)benzonitrile
To a solution of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159), 0.54 mmol, 200 mg) in ethanol (2 mL) was added 3-bromoacetylpyridine hydrobromide (0.59 mmol, 0.167 g) and triethylamine (0.5 mmol, 50 mg). The resulting mixture was subjected to microwave irradiation at 150° C. for 2 h. The precipitated solid was filtered, washed with water and dried to afford the crude product. It was further purified by silica gel column chromatography (60-120 mesh) to afford the title compound (40 mg).
N2-(3-chloro-4-fluorophenyl)-N4-(3-methoxypropyl)- 5-[4-(pyridin-3-yl)-1,3-thiazol-2-yl]pyrimidine-2,4- diamine
To a suspension of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159), 0.22 mmol, 80 mg) in DMF (2 mL), was added 4-bromoacetylpyridine hydrobromide (0.23 mmol, 65 mg) and warmed to 80° C. for 3 h. After completion of the reaction, as monitored by TLC, the reaction mixture was quenched with water. The solid that precipitated out was filtered. It was further stirred with acetonitrile, filtered and dried to afford the title compound (60 mg).
N2-(3-chloro-4-fluorophenyl)-N4-(3-methoxypropyl)- 5-[4-(pyridin-4-yl)-1,3-thiazol-2-yl]pyrimidin-2,4-diamine
To a suspension of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 0.54 mmol, 200 mg) and magnesium sulfate heptahydrate (0.65 mmol, 160 mg) in dry acetone (2 mL) under nitrogen atmosphere, was added ethyl 5-(bromoacetyl)-1,2-oxazole-3-carboxylate (0.59 mmol, 155 mg). The resulting mixture was stirred at reflux temperature for 3 hours, concentrated and purified by silica gel column chromatography (60-120 mesh; product eluted at 1% MeOH/CHCl3) as eluent to afford the title compound (64 mg).
ethyl 5-(2-{2-[(3-chloro-4-fluorophenyl)amino]-4-[(3- methoxypropyl)amino]pyrimidin-5-yl}-1,3-thiazol-4-yl)isoxazole- 3-carboxylate
To a suspension of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159), 0.14 mmol, 50 mg) in DMF (2 mL), was added 2-bromo-1-(1,3-thiazol-2-yl)ethanone (0.13 mmol, 27 mg) and warmed to 100° C. for 3 h. The reaction mixture was quenched with water. The solid that precipitated out was filtered, washed with acetonitrile and dried to afford the title compound (35 mg).
5-(2,4′-bi-1,3-thiazol-2′-yl)-N2-(3-chloro-4- fluorophenyl)-N4-(3-methoxypropyl)-pyrimidin- 2,4-diamine
To a suspension of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 0.27 mmol, 100 mg) in DMF (2 mL), was added 2-bromo-1-(5-methylisoxazol-4-yl)ethanone (Intermediate 164, 0.2 mmol, 60 mg) and warmed to 80° C. for 3 h. The reaction mixture was quenched with water and the solid that precipitated out was filtered, washed with acetonitrile and dried to afford the title compound (35 mg).
N2-(3-chloro-4-fluorophenyl)-N4-(3-methoxypropyl)- 5-[4-(5-methylisoxazol-4-yl)-1,3-thiazol-2- yl]pyrimidine-2,4-diamine
To a suspension of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 0.56 mmol, 206 mg,) in ethanol (5 mL), was added the mixture of 2-bromo-1-(1-methyl-1H-imidazol-5-yl)ethanone and 2,2-dibromo-1-(1-methyl-1H-imidazol-5-yl)ethanone (Intermediate 165, 1.12 mmol based on the former, 226 mg,) and warmed to 80° C. for 3 h. The reaction mixture was concentrated and subjected to purification by RP-HPLC (C18 column (19×250 mm, 7 μm); using a binary solvent mixture of 20 mM NH4OAc (A)/CH3CN (B) (0-20 min: 10-60% B, 20-35 min: 60% B and 35-45 min: 60-100% B; flow rate of 15 mL/min; Separation was monitored at 210 and 254 nm) to give the title compound (98 mg).
N2-(3-chloro-4-fluorophenyl)-N4-(3-methoxypropyl)- 5-[4-(1-methyl-1H-imidazol-5-yl)-1,3-thiazol-2- yl]pyrimidine-2,4-diamine
To a solution of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 200 mg, 0.5 mmol) in ethanol (1 mL) was added methyl-2-chloroacetoacetate (0.072 mL, 0.089 g, 0.6 mmol). The resulting mixture was subjected to microwave irradiation at 150° C. for 2 h. The precipitated solid was filtered, washed with water and dried to afford the crude product. It was further purified by silica gel column chromatography (60-120 mesh; product eluted at 20% ethyl acetate/hexanes) as eluent to afford the title compound (40 mg).
methyl 2-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-[(3- methoxypropyl)amino] pyrimidin-5-yl}-4- methyl-1,3-thiazole-5- carboxylate
To a solution of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 100 mg, 0.27 mmol) in ethanol (10 mL) was added ethyl 2-bromo-3-oxo-3-phenylpropanoate (80 mg, 0.29 mmol). The resulting mixture was stirred overnight at RT. The solvent was removed in vacuo and the slurry taken in ethyl acetate was washed with water and brine. It was dried over sodium sulfate and further purified by silica gel column chromatography (60-120 mesh) using 1% MeOH/CHCl3 as eluent to afford the title compound (32 mg).
ethyl 2-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-[(3- methoxypropyl)amino] pyrimidin-5-yl}-4- phenyl-1,3-thiazole-5- carboxylate
To 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 1 mmol, 0.37 g) and [1-ethoxy-1,3-dioxo-3-(pyridin-2-yl)propan-2-ylidene]diazenium (Intermediate 168, 0.91 mmol, 200 mg) taken in dry toluene (5 mL), Copper(I) bromide dimethyl sulfide complex (0.76 mmol, 157 mg) was added and heated at 110° C. for 0.5 h. The reaction mixture was cooled to room temperature, quenched with water and extracted with ethyl acetate. The organic layer was washed with brine (50 mL×2) and dried over sodium sulphate. The solvent was removed under vacuum to afford a solid, which was purified by silica gel column chromatography using chloroform:methanol (9:1) as eluent. It was further purified by RP-HPLC (Kromasil C18 column (50×250 mm, 10 μm); using a binary solvent mixture of 20 mM NH4OAc (A)/CH3CN (B) (0-20 min: 10-80% B, 20-30 min: 80% B, flow rate of 40 mL/min; Separation was monitored at 210 nm and 254 nm) to give the title compound (42 mg).
1H NMR
ethyl 2-{2-[(3-chloro-4- fluorophenyl)amino]-4- [(3- methoxypropyl)amino]- pyrimidin-5-yl}-4-(pyridin- 2-yl)-1,3-thiazole-5- carboxylate
To a solution of 2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidine-5-carbothioamide (Intermediate 159, 95 mg, 0.25 mmol) in ethanol (10 mL) was added ethyl 2-chloro-3-(1-methyl-1H-pyrazol-3-yl)-3-oxopropanoate (Intermediate 171, 130 mg, 0.56 mmol). The resulting mixture was refluxed at 90° C. for 3 d. The solvent was removed in vacuo and the slurry was taken in ethyl acetate and washed with water and brine. The organic solution was dried over sodium sulfate and further purified by silica gel column chromatography (60-120 mesh) using 1% MeOH/CHCl3 as eluent to afford the title compound (24 mg).
ethyl 2-{2-[(3-chloro- 4-fluorophenyl)amino]- 4-[(3- methoxypropyl)amino] pyrimidin-5-yl}-4-(1- methyl-1H-pyrazol-3- yl)-1,3-thiazole-5- carboxylate
Example 505 (0.16 mmol 75 mg,) was dissolved in tetrahydrofuran (2 mL) and treated with 1 N aq. NaOH (0.6 mL). The reaction mixture was warmed to 60° C. for 24 h. The reaction mixture was concentrated and the aqueous layer carefully acidified with 1.5 N HCl. The solid that precipitated was filtered out, washed with water and dried under vacuum to yield the title compound (15 mg).
2-{2-[(3-chloro-4- fluorophenyl)amino]-4- [(3- methoxypropyl)amino] pyrimidin-5-yl}-4- methyl-1,3-thiazole-5- carboxylic acid
To a suspension of 150 mg of Example 506 (0.28 mmol, 150 mg) taken in tetrahydrofuran (2.5 mL) and water (2.5 mL), Lithium hydroxide monohydrate (1.11 mmol, 46 mg) was added and the reaction was warmed overnight at 60° C. After completion of reaction, the reaction mixture was concentrated and the aqueous layer was carefully acidified with 1.5 N HCl. The solid that precipitated was filtered out, washed with water and dried under vacuum to yield the title compound (110 mg).
2-{2-[(3-chloro-4- fluorophenyl)amino]-4- [(3- methoxypropyl)amino] pyrimidin-5-yl}-4- phenyl-1,3-thiazole-5- carboxylic acid
To 40 mg of ethyl 2-{2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidin-5-yl}-4-(pyridin-2-yl)-1,3-thiazole-5-carboxylate (Example 507, 0.07 mmol) taken in THF (1 mL) and water (1 mL), was added Lithium hydroxide monohydrate (0.29 mmol, 12 mg) and the reaction was warmed overnight at 65° C. The reaction mixture was concentrated then the aqueous layer was carefully acidified with 1.5 N HCl. The solid that precipitated was filtered out, washed with water and dried under vacuum to yield 18 mg of the title compound as a yellow powder.
2-{2-[(3-chloro-4- fluorophenyl)amino]-4- [(3- methoxypropyl)amino] pyrimidin-5-yl}-4- (pyridin-2-yl)-1,3- thiazole-5-carboylic acid
To 80 mg of ethyl 2-{2-[(3-chloro-4-fluorophenyl)amino]-4-[(3-methoxypropyl)amino]pyrimidin-5-yl}-4-(1-methyl-1H-pyrazol-3-yl)-1,3-thiazole-5-carboxylate (Example 508, 0.16 mmol) taken in THF (5 mL) was added Barium hydroxide monohydrate (0.44 mmol, 0.083 g) and water (5 mL). The reaction mixture was allowed to stir at RT overnight. After completion of the reaction, the mixture was then carefully acidified with 1.5 N HCl to pH=2 and the precipitate formed was filtered, washed with water and dried to yield the title compound (24 mg).
2-{2-[(3-chloro-4- fluorophenyl)amino]-4- [(3- methoxypropyl)amino] pyrimidin-5-yl}-4-(1- methyl-1H-pyrazol-3- yl)-1,3-thiazole-5- carboxylic acid
A suspension of (2E)-3-{3-[2-chloro-4-(morpholin-4-yl)pyrimidin-5-yl]phenyl}prop-2-enoate (Intermediate 145) (0.8 mmol, 0.30 g, 1 eq), (5-amino-2-fluorophenyl)methanol (0.88 mmol, 0.12 g, 1.1 eq), tris(dibenzyledeneacetone)dipalladium(0) (0.24 mmol, 0.22 g, 30 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (0.24 mmol, 0.11 g, 30 mol %) and sodium carbonate (0.8 mmol, 0.08 g, 1 eq) in acetonitrile/water (6 mL:2 mL) was heated to 90° C. for 30 minutes. The reaction mixture was concentrated and the residue was taken in ethyl acetate (50 mL), washed with water (2×) and brine (1×). The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column (60-120 mesh) chromatography using hexane:ethyl acetate (3:1) as an eluent to yield the title compound (0.190 g).
1H NMR
ethyl (2E)-3-{3-[2-{[4-fluoro-3- (hydroxymethyl)phenyl]amino}- 4-(morpholin-4-yl)pyrimidin-5- yl]phenyl}prop-2-enoate
A suspension of (2E)-3-{3-[2-chloro-4-(morpholin-4-yl)pyrimidin-5-yl]phenyl}prop-2-enoate (Intermediate 145) (0.67 mmol, 0.25 g, 1 eq), 1H-indol-7-amine (0.8 mmol, 0.10 g, 1.2 eq), tris(dibenzyledeneacetone)dipalladium(0) (0.2 mmol, 0.184 g, 30 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (0.20 mmol, 0.1 g, 30 mol %) and sodium carbonate (0.7 mmol, 0.07 g, 1 eq) in acetonitrile/water (10 mL:2.5 mL) was heated to 90° C. for 30 minutes. The reaction mixture was concentrated and the residue was taken in ethyl acetate (50 mL), washed with water (2×) and brine (1×). The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude compound was purified by silica gel column (230-400 mesh) chromatography using chloroform:methanol (98:2) as an eluent to yield the title compound (0.17 g).
ethyl (2E)-3-{3-[2-(1H-indol- 7-ylamino)-4-(morpholin-4- yl)pyrimidin-5- yl]phenyl}prop-2-enoate
To ester derivative (1 eq) suspended in tetrahydrofuran (1 mL) was added 1 N aq. NaOH (4 eq) and stirred overnight at room temperature. After completion of reaction, the reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the desired carboxylic acid product.
The compounds in the below table were prepared using this method and the indicated starting material.
1H NMR
(2E)-3-{3-[2-{[4-fluoro- 3- (hydroxymethyl)phenyl] amino}-4-(morpholin-4- yl)pyrimidin-5- yl]phenyl}prop-2-enoic acid
(2E)-3-{3-[2-(1H-indol- 7-ylamino)-4- (morpholin-4-yl) pyrimidin-5-yl] phenyl}prop-2-enoic acid
A solution of azole (2.2 eq) in DMF (1 mL) was added slowly to a suspension of sodium hydride (2.1 eq) in DMF (1 mL). The reaction mixture was stirred for 30 min at room temperature. A solution of ethyl 5-(2-(3-chloro-4-fluorophenylamino)-4-(methylsulfonyl)pyrimidin-5-yl)nicotinate Intermediate 124 (1 eq) in DMF (1 mL) was added slowly to the reaction mixture at 0° C. with stiffing and allowed to warm to ambient temperature over 2.5 h. Water was added (˜6 mL) and the solid formed was filtered and dried to yield the product.
A solution of azole (2.2 eq) in DMSO (1 mL) was added slowly to a suspension of sodium hydride (2.1 eq) in DMSO (1 mL). The reaction mixture was stirred for 30 min at room temperature. A solution of Intermediate 124 (1 eq) in DMSO (1 mL) was added slowly to the reaction mixture at 0° C. with stirring and allowed to warm to ambient temperature over 2.5 h. Water was added (˜6 mL) and the solid formed was filtered and dried to yield the product.
The compounds in the below table were prepared using the methods described above as indicated and the starting material specified.
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-indazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxylate & ethyl 5-{2- [(3-chloro-4- fluorophenyl)amino]-4- (2H-indazol-2- yl)pyrimidin-5- yl}pyridine-3- carboxylate
1H NMR 400 MHz, DMSO-d6: δ 1.23 (t, J = 7.15 Hz, 3H), 1.28 (t, J = 7.15 Hz, 3H), 4.24-4.34 (m, 4H), 7.09 (dd, J = 6.90, 8.16 Hz, 1H), 7.20-7.27 (m, 1H), 7.31- 7.47 (m, 3H), 7.59 (t, J = 7.78 Hz, 1H), 7.62-7.70 (m, 1H), 7.74-7.87 (m, 3H), 8.03-8.10 (m, 3H), 8.14-8.17 (m, 1H),8.16- 8.21 (m, 2H), 8.45-8.52 (m, 1H), 8.56 (d, J = 2.26 Hz, 1H), 8.63 (d, J = 2.01 Hz, 1H), 8.71 (s, 1H), 8.86 (s, 1H), 8.95-9.01 (m, 3H), 10.26 (s, 1H), 10.47 (s, 1H).
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [5-methyl-3-(1,3-thiazol- 2-yl)-1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-5- carboxylate
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(difluoromethyl)-5- methyl-1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [5-(difluoromethyl)-3- methyl-1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{4-[3,5- bis(difluoromethyl)-1H- pyrazol-1-yl]-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(thiophen-3-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{4-[3- (acetylamino)-1H- pyrazol-1-yl]-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [4-(pyridin-2-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [4-(pyrimidin-4-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
a)Method A
b)Method A, overnight
c)Method B
d)Method B, 125° C., 4 h
A solution of ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(azol-1-yl)pyrimidin-5-yl}pyridine-3-carboxylate derivative (1 eq) in a mixture of tetrahydrofuran (1 mL) and water (1 mL) was treated with 1 N aq. sodium hydroxide (4 eq) and allowed to stir at room temperature for 3-8 h. After completion of the reaction, the mixture was carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the product.
A solution of ethyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-(azol-1-yl)pyrimidin-5-yl}pyridine-3-carboxylate derivative (1 eq) in a mixture of dioxane (1 mL) and water (1 mL) was treated with 1 N aq. Barium hydroxide (2 eq) and allowed to stir at room temperature for 2-8 h. After completion of the reaction, the mixture was carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water, dried to yield the product.
The compounds in the below table were prepared using the methods described above as indicated and the starting material specified.
1H NMR
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-indazol-1- yl)pyrimidin-5- yl}pyridine-3-carboxylic acid & 5-{2-[3-chloro-4- fluorophenyl)amino]-4- (2H-indazol-2- yl)pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4-[5- methyl-3-(1,3-thiazol-2- yl)-1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3-carboxylic acid.
5-{2-[(3-chloro-4- fluorophenyl)amino]-4-[3- (difluoromethyl)-5-methyl- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4-[5- (difluoromethyl)-3-methyl- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{4-[3,5- bis(difluoromethyl)-1H- pyrazol-1-yl]-2-[(3-chloro- 4- fluorophenyl)amino]- pyrimidin-5-yl}pyridine-3- carboxylic acid
5-{2-[(3-chloro-4- fluorophenyl)amino]-4-[3- (thiophen-3-yl)-1H- pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{4-[3-(acetylamino)-1H- pyrazol-1-yl]-2-[(3-chloro- 4- fluorophenyl)amino] pyrimidin-5-yl}pyridine-3- carboxylic acid
ethyl 5-{2-[(3-chloro-4- fluorophenyl)amino]-4-[4- (pyridin-2-yl)-1H-pyrazol- 1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
5-{2-[(3-chloro-4- fluorophenyl)amino]-4-[4- (pyrimidin-4-yl)-1H- pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
a)Method C
b)Method D
c)Method D, THF-H2O
To a stirred solution of the carboxylic acid derivative (1 eq), pyridine (0.5 ml) and di-tert-butyl dicarbonate (1.3 eq) in dioxane (10-15 mL), ammonium hydrogencarbonate (1.26 eq) was added and the mixture was stirred for 4-16 h. The reaction mixture was then diluted with water (30-40 ml), stirred until precipitation was complete and the residue was then collected by filtration, washed with water, dried and further purified by column chromatography to give the product.
A solution of carboxylic acid derivative (1.02 mmol) taken in thionyl chloride (2 mL) was heated to 85° C. for 2 h. Thionyl chloride was then removed in vacuo and the solid obtained was quenched with a saturated solution of NH3 in 1,4 dioxane (25 mL) and stirred for 20 min. The solid obtained was filtered and dried. The crude material was further purified by RP-HPLC to give the product.
The compounds in the below table were prepared using the methods described above as indicated and the starting material specified.
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [5-methyl-3-(1,3- thiazol-2-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(difluoromethyl)-5- methyl-1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxamide
5-{4-[3,5- bis(difluoromnethyl)- 1H-pyrazol-1-yl]-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}pyridine- 3-carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(thiophen-3-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxamide
5-{4-[3-(acetylamino)- 1H-pyrazol-1-yl]-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}pyridine- 3-carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [(4-(pyridin-2-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [4-(pyrimidin-4-yl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-indazol-1- yl)pyrimidin-5- yl}pyridine-3- carboxamide & 5-{2- [(3-chloro-4- fluorophenyl)amino]-4- (2H-indazol-2- yl)pyrimidin-5- yl}pyridine-3- carboxamide
b)Method E; Boc2O( 2.5 eq), Py (4 eq), NH4HCO3 (4 eq), DMF
c)Method E; DMSO
d)Method F
To a mixture of carboxylic acid derivative (1 eq), triethylamine (3 eq) and methoxylamine hydrochloride (2 eq) in DCM was added T3P (50% in EtOAc, 1.5 eq) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred overnight. The reaction mixture was then diluted with dichloromethane (12 mL) and washed successively with water, 10% aq sodium bicarbonate solution and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and further purified by silica gel column chromatography to yield the product.
To a mixture of carboxylic acid derivative (1 eq) and HATU (1.5 eq) in NMP, was added triethylamine (3 eq) and methoxylamine hydrochloride (1.2 eq) and the reaction mixture was stirred overnight. The reaction mixture was then diluted with water and the aqueous layer was extracted with EtOAc. The organic layer successively washed with 10% aq sodium bicarbonate solution and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and further purified by silica gel column chromatography to yield the product.
The compounds in the below table were prepared using the methods described above as indicated and the starting material specified.
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [5-methyl-3-(1,3-thiazol- 2-yl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-N- methoxypyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(difluoromethyl)-5- methyl-1H-pyrazol-1- yl]pyrimidin-5-yl}-N- methoxypyridine-3- carboxamide
5-{4-[3,5- bis(difluoromethyl)-1H- pyrazol-1-yl]-2-[(3- chloro-4- fluorophenyl)amino] pyrimidin-5-yl}-N- methoxypyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(thiophen-3-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-N- methoxypyridine-3- carboxamide
5-{4-[3-(acetylamino)- 1H-pyrazol-1-yl]-2-[(3- chloro-4- fluorophenyl)amino]- pyrimidin-5-yl}-N- methoxypyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [4-(pyridin-2-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-N- methoxypyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- [4-(pyrimidin-4-yl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-N- methoxypyridine-3- carboxamide
5-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-indazol-1- yl)pyrimidin-5-yl}-N- methoxypyridine-3- carboxamide & 5-{2-[(3- chloro-4- fluorophenyl)amino]-4- (2H-indazol-2- yl)pyrimidin-5-yl}-N- methoxypyridine-3- carboxamide>
A solution of azole (2.2 eq) in DMF (1 mL) was added slowly to a suspension of sodium hydride (2.1 eq) in DMF (1 mL). The reaction mixture was stirred for 30 min at room temperature. A solution of (E)-ethyl 3-(3-(2-(3-chloro-4-fluorophenylamino)-4-(methylsulfonyl)pyrimidin-5-yl)phenyl)acrylate Intermediate 125 (1 eq) in DMF (1 mL) was added slowly to the reaction mixture at 0° C. with stirring and allowed to warm to ambient temperature over 2.5 h. Water was added (˜6 mL) and the solid formed was filtered, dried to yield the product.
A solution of azole (2.2 eq) in DMSO (1 mL) was added slowly to a suspension of sodium hydride (2.1 eq) in DMSO (1 mL). The reaction mixture was stirred for 30 min at room temperature. A solution of (E)-ethyl 3-(3-(2-(3-chloro-4-fluorophenylamino)-4-(methylsulfonyl)pyrimidin-5-yl)phenyl)acrylate Intermediate 125 (1 eq) in DMSO (1 mL) was added slowly to the reaction mixture at 0° C. with stirring and allowed to warm to ambient temperature over 2.5 h. Water was added (˜6 mL) and the solid formed was filtered, dried to yield the product.
A suspension of azole (1.2 eq), potassium tert-butoxide (1.5 eq) and (E)-ethyl 3-(3-(2-(3-chloro-4-fluorophenylamino)-4-(methylsulfonyl)pyrimidin-5-yl)phenyl)acrylate Intermediate 125 (1 eq) in DMSO (3 mL) was subjected to microwave irradiation at 130° C. for 1 h. After the reaction cooled to RT, the mixture was diluted with EtOAc, washed successively with water and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and further purified by silica gel column chromatography to yield the product.
The compounds in the below table were prepared using the methods described above as indicated and the starting material specified.
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-(1H- indazol-1-yl)pyrimidin-5- yl}phenyl)prop-2-enoate & ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-(2H- indazol-2-yl)pyrimidin-5- yl}phenyl)prop-2-enoate
1H NMR 400 MHz, DMSO- d6:: δ 1.24 (t, J = 7.03 Hz, 3H), 4.16 (d, J = 7.03 Hz, 2H), 6.51 (d, J = 16.06 Hz, 1H), 6.58 (d, J = 16.06 Hz, 1H), 7.00 (d, J = 7.03 Hz, 1H), 7.08 (t, J = 7.53 Hz, 2H), 7.21-7.48 (m, 8H), 7.52-7.68 (m, 6H), 7.72-7.79 (m, 2H), 7.83 (d, J = 7.28 Hz, 1H), 7.94 (s, 1H), 8.10 (dd, J = 6.90, 2.38 Hz, 1H), 8.17 (s, 1H), 8.17-8.21 (m, 1H), 8.28- 8.34 (m, 1H), 8.73 (s, 1H), 8.80 (s, 1H), 8.87 (d, J = 1.00 Hz, 1H), 10.21 (s, 1H), 10.43 (s, 1H).
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-[5- methyl-3-(1,3-thiazol-2-yl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-[3- (difluoromethyl)-5-methyl- 1H-pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{4-[3,5- bis(trifluoromethyl)-1H- pyrazol-1-yl]-2-[(3-chloro-4- fluorophenyl)amino]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-[3- (thiophen-3-yl)-1H-pyrazol- 1-yl]pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{4-[3- (acetylamino)-1H-pyrazol-1- yl]-2-[(3-chloro-4- fluorophenyl)amino]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-[4- (pyridin-2-yl)-1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- chloro-4- fluorophenyl)amino]-4-[4- (pyrimidin-4-yl)-1H-pyrazol- 1-yl]pyrimidin-5- yl}phenyl)prop-2-enoate
a)Method I
b)Method J
c)Method K
A solution of carboxylic ester derivative (1 eq) in a mixture of tetrahydrofuran (1 mL) and water (1 mL) was treated with 1 N aq. sodium hydroxide (4 eq) and allowed to stir at room temperature for 1 h. After completion of the reaction, the mixture was carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to the product.
A solution of carboxylic ester derivative (1 eq) in a mixture of dioxane (1 mL) and water (1 mL) was treated with 1 N aq. Barium hydroxide (2 eq) and warmed to 60° C. for 3-10 h. After completion of the reaction, the mixture was carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water, dried to yield the product.
(2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- (1H-indazol-1- yl)pyrimidin-5- yl}phenyl)prop-2-enoic acid & (2E)-3-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- (2H-indazol-2- yl)pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4-[5- methyl-3-(1,3-thiazol-2- yl)-1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4-[3- (difluoromethyl)-5-methyl- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{4-[3,5- bis(difluoromethyl)-1H- pyrazol-1-yl]-2-[(3-chloro- 4- fluorophenyl)amino] pyrimidin-5-yl}phenyl)prop-2- enoic acid
(2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4-[3- (thiophen-3-yl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{4-[3- (acetylamino)-1H-pyrazol- 1-yl]-2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl}phenyl)prop-2- enoic acid
(2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4-[4- (pyridin-2-yl)-1H-pyrazol- 1-yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4-[4- (pyrimidin-4-yl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid.
a)Method L
b)Method M
c)Method M, ambient temperature
The title compound was prepared using the general method described above for Example 1 using 3-(methoxycarbonyl)phenylboronic acid and intermediate 115 as starting materials.
MS: ES+ 492 for C22H14ClF4N5O2.
1H NMR (300 MHz, DMSO-D6) δ ppm 3.82 (s, 3H), 6.99 (d, 1H), 7.35-7.55 (m, 3H), 7.64-7.76 (m, 2H), 7.91 (d, 1H), 8.09 (dd, 1H), 8.40 (s, 1H), 8.80 (s, 1H), 10.43 (s, 1H).
The title compound was prepared using the general method described above for Example 214 using 1N sodium hydroxide (2 equivalents), dioxane:THF (1:1) as solvent and (Example 569 as a starting material.
MS: ES+ 478 for C21H12ClF4N5O2.
1H NMR (400 MHz, DMSO-D6) δ ppm 6.98 (d, 1H), 7.37-7.51 (m, 3H), 7.66 (s, 1H), 7.69-7.76 (m, 1H), 7.88 (d, 1H), 8.10 (dd, 1H), 8.39 (s, 1H), 8.79 (s, 1H), 10.40 (s, 1H), 12.93 (s, 1H).
(1,3-trans)-tert-butyl 2,2-dimethyl-3-(3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)cyclopropanecarboxylate Intermediate 174 (342 mg, 0.92 mmol), 5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine (200 mg, 0.46 mmol) (Intermediate 115), Tris(dibenzylideneacetone)dipalladium(0) (41.9 mg, 0.05 mmol), 2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (65.5 mg, 0.14 mmol), Na2CO3 (200 mg, 1.89 mmol), acetonitrile (3 mL) and water (0.750 mL) were combined and degassed with an argon stream for 10 min. The mixture was warmed at 80° C. for 2.5 hrs, allowed to cool, diluted with acetonitrile, filtered and adsorbed on 15 ml silica gel. Purified by flash chromatography (80 g cartridge, 0-10% ethyl acetate in hexane). A crude sample of the tert-butyl ester of the title compound was thus obtained as a yellow-orange solid: (100 mg). This sample was converted to the title compound as follows: Sample was first combined with dichloromethane (1 mL) and trifluoroacetic acid (1 mL, 12.98 mmol). The clear solution was stirred at room temperature for 45 min then evaporated. The mixture was dissolved in dichloromethane and applied to 5 ml silica gel column. Eluted with 20% ethyl acetate in hexane, then with 50% ethyl acetate in hexane. Pure fractions evaporated and dissolved in 0.25 ml ethyl acetate then precipitated with 5 ml hexanes. Filtered to give a white solid (9 mg).
MS: ES+ 512 for C26H21F4N5O2.
1H NMR (400 MHz, DMSO-D6) δ ppm 0.91 (s, 3H), 1.32 (s, 3H), 2.05 (d, 1H), 2.56 (d, 1H), 7.14 (d, 1H), 7.24-7.28 (m, 1H), 7.31 (d, 2H), 7.37 (s, 1H), 7.40-7.44 (m, 2H), 7.80-7.87 (m, 2H), 8.64 (d, 1H), 8.72 (d, 1H), 10.06 (s, 1H), 12.20 (s, 1H).
(1S,3S)-tert-butyl 3-(3-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)phenyl)-2,2-dimethylcyclopropanecarboxylate Intermediate 176 (35 mg, 0.06 mmol) was dissolved in dichloromethane (1 mL) then trifluoroacetic acid (1 ml, 12.98 mmol) was added to give a clear yellow solution. The mixture was stirred at room temperature for 30 minutes. The solution was concentrated and the residue was triturated with 3 ml hexane to give the title compound as a light yellow solid (30 mg).
MS: ES+ 546 for C26H20ClF4N5O2.
1H NMR (400 MHz, DMSO-D6) δ ppm 0.77 (s, 3H), 1.26 (s, 3H), 1.87 (d, 1H), 2.40 (d, 1H), 6.90 (s, 1H), 6.93 (d, 1H), 7.06 (d, 1H), 7.17 (d,1H), 7.29 (t, 1H), 7.39 (t, 1H), 7.66-7.73 (m, 1H), 8.12 (dd, 1H), 8.24 (s, 1H), 8.77 (s, 1H), 10.38 (s, 1H).
The title compound was prepared using the general method described above for Example 572 using Intermediate 180 as a starting material.
MS: ES+ 519 for C23H15ClF4N6O2.
1H NMR (300 MHz, DMSO-D6) δ ppm 0.78-0.90 (m, 1H), 1.28-1.38 (m, 1H), 1.40-1.51 (m, 1H), 1.81-1.93 (m, 1H), 7.05 (d, 1H), 7.42 (t,1H), 7.48 (m, 1H), 7.67-7.76 (m, 1H), 8.08 (dd, 1H), 8.31 (s, 1H), 8.49 (s, 1H), 8.54 (s, 1H), 8.82 (s, 1H), 10.47 (s, 1H).
The title compound was prepared using the general method described above for Example 572 using Intermediate 183 as a starting material.
MS: ES+ 518 for C24H16ClF4N5O2.
1H NMR (400 MHz, DMSO-D6) δ ppm 1.17-1.27 (m, 1H), 1.33-1.41 (m, 1H), 1.68-1.76 (m, 1H), 2.28-2.37 (m, 1H), 6.86 (s, 1H), 6.94-7.00 (m, 2H), 7.16 (d, 1H), 7.24 (t, 1H), 7.39 (t, 1H), 7.66-7.73 (m, 1H), 8.12 (dd, 1H), 8.24 (s, 1H), 8.79 (s, 1H), 10.38 (s, 1H), 12.25 (s, 1H).
Racemic (1,2-trans)-tert-butyl 2-(3-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)phenyl)cyclopropanecarboxylate Intermediate 183 (170 mg) was subjected to preparative chiral supercritical fluid chromatography using an instrument manufactured by Berger. Column: Chiralpak AD-H, dimensions: 250×21mm, 5μ; modifier: 25% isopropanol with 0.4% dimethylethylamine; flow rate: 60 ml/min; oven temperature: 40° C., outlet pressure: 100 bar. Samples of the separate ester enantiomers were thus obtained in >98% e.e. (60 mg each). These samples were separately deprotected under the conditions described for the racemate Example 574 to give the enantiopure title compounds. The absolute stereochemistry of the samples was unassigned, Example 575 displays a (+) rotation and Example 576 displays a (−) rotation. Mass spectral and 1H NMR data for both enantiomers are identical to that of the racemic sample.
Methyl 5-bromo-2-(2-(methylsulfonyl)ethylamino)nicotinate Intermediate 188 (200 mg, 0.59 mmol), PdCl2 (dppf)-CH2Cl2 adduct (72.7 mg, 0.09 mmol), bis(pinacolato)diboron (181 mg, 0.71 mmol) and potassium acetate (175 mg, 1.78 mmol) were combined in dioxane (4 mL). Argon was bubbled through the mixture for 10 minutes and then it was warmed at 90° C. for 18 hours. The dark suspension was filtered through a celite pad and the solids were rinsed thoroughly with dichloromethane. The filtrate was concentrated to give the crude boronate ester intermediate: methyl 2-(2-(methylsulfonyl)ethylamino)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)nicotinate (420 mg). This material was combined with 5-bromo-N-(3,5-dimethoxyphenyl)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine Intermediate 215 (133 mg, 0.30 mmol), Tris(dibenzylideneacetone)dipalladium(0) (27.4 mg, 0.03 mmol), Sodium carbonate (95 mg, 0.90 mmol) and 2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl (42.8 mg, 0.09 mmol) then suspended in acetonitrile (3 mL) and water (0.75 mL). The mixture was degassed with argon stream for 10 min then heated at 80° C. for 1 hour. The mixture was diluted with acetonitrile and adsorbed on 10 ml silica gel. Flash chromatography (0 to 50% acetonitrile in dichloromethane, 25 g cartridge) gave the title compound as a yellow solid (133 mg).
MS: ES+ 662 for C26H26F3N7O6S.
1H NMR (400 MHz, DMSO-d6) δ ppm 3.02 (s, 3H), 3.41 (t, 2H), 3.74 (s, 6H), 3.77 (s, 3H), 3.89-3.99 (m, 2H), 6.20 (t, 1H), 7.02 (d, 1H),7.10 (d, 2H), 7.80 (d, 1H), 8.19 (t, 1H), 8.22 (d, 1H), 8.43 (d, 1H), 8.77 (s, 1H), 10.12 (s, 1H)
The compounds in the table below were prepared using the general procedure described above for Example 577 and the starting materials listed.
1H NMR
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (methylamino)nicotinate
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (dimethylamino) nicotinate
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (1H-1,2,4-triazol-1- yl)nicotinate
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (1H-pyrazol-1- yl)nicotinate
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (1H-imidazol-1- yl)nicotinate
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2- (methylamino)nicotinate
methyl 5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1- methyl-6-oxo-1,6- dihydropyridine-3- carboxylate
The compounds in the below table were prepared using the general method described above for Example 214 using 1N sodium hydroxide (2 equivalents), dioxane:THF (1:1) as solvent and the starting material indicated.
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2-(2- (methylsulfonyl)ethyl- amino)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (methylamino)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (dimethylamino)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (1H-1,2,4-triazol-1- yl)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (1H-pyrazol-1- yl)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- (1H-imidazol-1- yl)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2- (methylamino)nicotinic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1- methyl-6-oxo-1,6- dihydropyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 115, 1 eq), boronate derivative (1.1 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (20 mol %) and sodium carbonate (1 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-20 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform:methanol (9:1) as eluent to give the product. The compounds in the below table were prepared using this general procedure and the starting material specified.
methyl N-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)-N- methylglycinate
methyl 1-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)-L-prolinate
methyl 1-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)-D-prolinate
methyl 1-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)piperidine-3- carboxylate
methyl 1-(3-{2-[(3-chloro- 4-fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)piperidine-2- carboxylate
To the amino ester derivative (1 eq) taken in a mixture of tetrahydrofuran and water (3:1), was added Barium hydroxide monohydrate (2 eq) and allowed to stir at room temperature for 12 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the product.
To the amino ester derivative (1 eq) taken in a mixture of tetrahydrofuran and water (3:1), was added Sodium hydroxide (2 eq) and allowed to stir at room temperature for 3 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the product.
To the amino ester derivative (1 eq) taken in a mixture of acetonitrile and water (3:1), was added 1 N aq. Sodium hydroxide (2.5 eq) and the mixture was heated at 85° C. for 1 h. After completion of the reaction, the mixture was then carefully acidified with 1.5 N HCl and the precipitate formed was filtered, washed with water and dried. It was further dissolved in minimum amount of ethyl acetate, then hexane was added dropwise with constant stirring. The precipitate formed was filtered, washed with water and dried to yield to yield the product.
To the amino ester derivative (1 eq) taken in a mixture of dioxane and water (3:1), was added Sodium hydroxide (2 eq) and the reaction mixture allowed to stir at room temperature for 3 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl, extracted with ethyl acetate. The organic layer was concentrated and the solid obtained was dissolved in minimum amount of CH2Cl2. Hexane was added dropwise with constant stirring and the precipitate formed was filtered, washed with water and dried to yield the product.
The compounds in the below table were prepared using this general procedure and the starting material specified.
N-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)-N- methylglycine
1-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)-L-proline
1-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)-D-proline
1-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)piperidine- 3-carboxylic acid
1-(3-{2-[(3-chloro-4- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)piperidine- 2-carboxylic acid
c)Method I;
d)Method II;
e)Method III;
f)Method IV
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 115, 0.34 mmol, 0.15 g), the mixture of methyl 1-[3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl]pyrrolidine-3-carboxylate and {3-[3-(methoxycarbonyl)pyrrolidin-1-yl]phenyl}boronic acid (Intermediate 208, 0.34 mmol based on the boronic ester, 113 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.068 mmol, 50 mg) and sodium carbonate (0.44 mmol, 47 mg) in acetonitrile/water (20 mL:5 mL) was degassed and heated to 90° C. for 15-20 min under inert atmosphere. The solvent was removed under vacuum and the crude mixture was taken in CHCl3 (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 12% ethyl acetate/hexanes as eluent to yield 65 mg of the title compound.
methyl 1-(3-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)pyrrolidine- 3-carboxylate
To a suspension of Example 603 (0.15 mmol, 85 mg) taken in acetonitrile (6 mL) and water (3 mL), was added NaOH (0.42 mmol, 18 mg) and the mixture heated to 85° C. for 1 h. The reaction mixture was concentrated in vacuo, acidified with 1.5 N HCl and extracted with ethyl acetate (20 mL). The organic layer was washed with brine (10 mL), dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by silica gel column chromatography (60-120 mesh) using chloroform and methanol (1%) as eluent to give the title compound (31 mg).
1-(3-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5- yl}phenyl)pyrrolidine- 3-carboxylic acid
suspension of 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (20 mol %) and sodium carbonate (1 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform:methanol (9:1) as eluent to give the product.
ethyl (2E)-3-(3-{2-[(3,5- dimethoxyphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3,5- dimethoxyphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3,5- dimethylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3,5- dimethylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{2-[(3- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3- fluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoate
A suspension of either 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.2-1.5 eq), potassium tert-butoxide (1.5 eq) and ethyl(2E)-3-(3-{2-[(3,5-difluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}phenyl)prop-2-enoate (Intermediate 223, 1 eq) in DMSO (3 mL) was subjected to microwave irradiation at 130° C. for 1 h. After the reaction was cooled to RT, the mixture was diluted with EtOAc, washed successively with water and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and further purified by silica gel column chromatography using ethyl acetate/hexanes to yield the product. The compounds in the below table were prepared using this procedure and the specified starting material.
1H NMR
ethyl (2E)-3-(3-{2-[(3,5- difluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-[(3,5- difluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)prop-2-enoate
NaH (60% dispersion in mineral oil, 2 eq) was suspended in 1 mL of DMF and stirred for about 5 min at 0° C. Then either 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (2 eq) in DMF (2 mL) was added dropwise at 0° C. for about 10 min and stirring continued for about 20 min under N2. Then ethyl(2E)-3-{3-[4-(methylsulfonyl)-2-{[3-(methylsulfonyl)phenyl]amino}pyrimidin-5-yl]phenyl}prop-2-enoate (Intermediate 224, 1 eq) in DMF was added dropwise and the reaction was stirred overnight at room temperature. After completion of the reaction, water was added and the solid obtained was filtered off, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the product. The compounds in the below table were prepared using this procedure and the specified starting material.
1H NMR
ethyl (2E)-3-[3-(2-{[3- (methylsulfonyl)phenyl] amino}-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl)phenyl]prop-2-enoate
ethyl (2E)-3-[3-(2-{[3- (methylsulfonyl)phenyl] amino}-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl)phenyl]prop-2-enoate
To a suspension of Example 605 (1 eq) taken in dioxane and water (1:1), was added Barium hydroxide monohydrate (2 eq) and the mixture was stirred at RT for 2 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered off. The solid was taken in acetonitrile and stirred for 1 h. The solid was then filtered off, washed with dichloromethane and dried to give the title compound.
To a suspension of Example 606 (1 eq) taken in dioxane and water (1:1), was added Barium hydroxide monohydrate (2 eq) and the mixture was warmed to 60° C. for 2 h. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered and dried to give the title compound.
To a suspension of Example 607 (1 eq) taken in THF and water (2:1), was added Barium hydroxide monohydrate (3 eq) and the mixture was allowed to stir at RT for 2 days and refluxed at 60° C. for 2 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 608 (1 eq) taken in THF and water (2:1), was added sodium hydroxide (2 eq) and the mixture was heated to 50° C. for 5 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 611 (1 eq) taken in THF and water (2:1), was added Barium hydroxide monohydrate (4 eq) and the mixture was allowed to stir overnight at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered off. The solid was taken in10 mL of dichloromethane and stirred for 1 h. The solid was then filtered off, washed with dichloromethane and dried to give the title compound.
To a suspension of Example 612 (1 eq) taken in dioxane and water (1:1), was added Barium hydroxide monohydrate (4 eq) and the mixture was heated overnight at 70° C. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered off. The solid was taken in dichloromethane and stirred for 1 h. The solid was then filtered off, washed with dichloromethane and dried to give the title compound.
To a suspension of Example 609 (1 eq) taken in THF and water (1:1), was added lithium hydroxide monohydrate (4 eq) and the mixture was stirred overnight at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered off. The solid was taken in acetonitrile and stirred overnight. The solid was then filtered off, washed with acetonitrile and dried to give the title compound.
To a suspension of Example 610 (1 eq) taken in THF and water (1:1), was added lithium hydroxide monohydrate (4 eq) and the mixture was stirred at RT for 2 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered off. The solid was taken in acetonitrile and stirred for 1 h. The solid was then filtered off, washed with acetonitrile and dried to give the title compound.
To a suspension of Example 613 (1 eq) taken in dioxane and water (2:1), was added sodium hydroxide (2 eq) and the mixture was allowed to stir overnight at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 614 (1 eq) taken in dioxane and water (2:1), was added sodium hydroxide (2 eq) and the mixture was allowed to stir overnight at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
(2E)-3-(3-{2-[(3,5- dimethoxyphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3,5- dimethoxyphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3,5- dimethylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3,5- dimethylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3,5- difluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3,5- difluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- fluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-[3-(2-{[3- (methylsulfonyl)phenyl]- amino}-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl)phenyl]prop-2-enoic acid
(2E)-3-[3-(2-{[3- (methylsulfonyl)phenyl] amino}-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl)phenyl]prop-2-enoic acid
A suspension of either 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]-dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 30% ethyl acetate/hexanes as eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
Ethyl 5-{2-[(3,5- dimethoxyphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
Ethyl 5-{2-[(3,5- dimethoxyphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
Ethyl 5-{2-[(3,5- dimethoxyphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3,5- dimethylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- fluorophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- fluorophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
A suspension of either 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (1.2-1.5 eq), potassium tert-butoxide (1 eq) and ethyl 5-{2-[(3,5-difluorophenyl)amino]-4-(methylsulfonyl)pyrimidin-5-yl}pyridine-3-carboxylate Intermediate 225 (1 eq) in DMSO was subjected to microwave irradiation at 130° C. for 1 h. After the reaction was cooled to RT, the mixture was diluted with EtOAc, washed successively with water and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and further purified by silica gel column chromatography using ethyl acetate/hexanes to yield the product. The compounds in the below table were prepared using this method and the specified starting material.
ethyl 5-{2-[(3,5- difluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3,5- difluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
NaH (60% dispersion in mineral oil, 2 eq) was dissolved in 1 mL of DMF and stirred for about 5 min at 0° C. Then either 3-(trifluoromethyl)-1H-pyrazole or 5-methyl-3-(trifluoromethyl)-1H-pyrazole (2 eq) in DMF (2 mL) was added dropwise at 0° C. for about 10 min and stirring continued for about 20 min under N2. Then ethyl 5-[4-(methylsulfonyl)-2-{[3-(methylsulfonyl)phenyl]amino}pyrimidin-5-yl]pyridine-3-carboxylate (Intermediate 226, 1 eq) in DMF was added dropwise and the reaction was stirred overnight at room temperature. Water was added and the solid obtained was filtered off, dried and purified by silica gel column chromatography using ethyl acetate/hexanes as eluent to yield the product. The compounds in the below table were prepared using this method and the specified starting material.
ethyl 5-(2-{[3- (methylsulfonyl)phenyl] amino}-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl)pyridine-3- carboxylate
ethyl 5-(2-{[3- (methylsulfonyl)phenyl] amino}-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimdin- 5-yl)pyridine-3- carboxylate
To a suspension of Example 625 (1 eq) taken in dioxane and water (1:1) was added barium hydroxide monohydrate (2 eq) and the mixture was stirred at RT for 2 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 626 (1 eq) taken in dioxane and water (1:1), was added Barium hydroxide monohydrate (2 eq) and the mixture was stirred at RT for 24 h. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered and dried to give the title compound.
To a suspension of Example 627 (1 eq) taken in THF and water (1:1), was added sodium hydroxide (2 eq) and the mixture was stirred at RT for 2 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 628 (1 eq) taken in THF and water (1:1), was added sodium hydroxide (2 eq) and the mixture was heated to 50° C. for 5 days. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 631 (1 eq) taken in THF and water (3:1), was added Barium hydroxide monohydrate (2 eq) and the mixture was stirred at RT for 1 h. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 632 (1 eq) taken in THF and water (2:1), was added sodium hydroxide (2 eq) and the mixture was allowed to stir at RT for 2 h. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 629 (1 eq) taken in THF and water (1:1), was added lithium hydroxide monohydrate (4 eq) and the mixture was stirred for 30′ at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was stirred with acetonitrile. It was then filtered, washed with acetonitrile and dried to give the title compound.
To a suspension of Example 630 (1 eq) taken in acetonitrile and water (1:1), was added sodium hydroxide (4 eq) and the mixture was stirred at RT for 1 h. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed and dried to give the title compound.
To a suspension of Example 633 (1 eq) taken in dioxane and water (2:1), was added Barium hydroxide monohydrate (2 eq) and the mixture was allowed to stir overnight at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
To a suspension of Example 634 (1 eq) taken in dioxane and water (2:1), was added Barium hydroxide monohydrate (2 eq) and the mixture was allowed to stir overnight at RT. The reaction mixture was concentrated in vacuo, acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to give the title compound.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridin-3- carboxylic acid
5-{2-[(3,5- dimethylphenyl) amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3,5- dimethylphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3,5- difluorophenyl)amino]- 4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3,5- difluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3- fluorophenyl)amino]- 4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-{2-[(3- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylic acid
5-(2-{[3- (methylsulfonyl) phenyl]amino}-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl)pyridine-3- carboxylic acid
5-(2-{[3- (methylsulfonyl) phenyl]amino}-4-[5- methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5- yl)pyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3,5-dimethylphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 218, 0.59 mmol, 250 mg), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (0.58 mmol, 171 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with dichloromethane (0.099 mmol, 81 mg) and sodium carbonate (0.58 mmol, 61 mg) were taken in a mixture of acetonitrile and water (20 mL:5 mL) and heated to 90° C. for 10-20′. Acetonitrile was concentrated in vacuo. The residue was taken in ethyl acetate, washed with water and brine, dried over sodium sulphate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (230-400 mesh) using 20% ethyl acetate/hexanes to yield 150 mg of the product.
methyl 5-{2-[(3,5- dimethylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimnidin- 5-yl}-2- methoxypyridine-3- carboxylate
To a suspension of methyl 5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 645, 0.29 mmol, 0.15 g) in THF and water (1:1), NaOH (0.58 mmol, 23 mg) was added and the mixture was stirred for 4 hours at rt. The THF was removed in vacuo and the reaction mixture diluted with water, acidified to pH=2 using 1.5 N HCl and the solid that precipitated was filtered and dried to get 0.065 g of the title compound.
5-{2-[(3,5- dimethylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylic acid
A solution of 5-bromo-N-(3,5-dimethylphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 217, 0.8 mmol, 330 mg), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (0.8 mmol, 234 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.16 mmol, 130 mg) and sodium carbonate (0.8 mmol, 85 mg) in acetonitrile (16 mL)/water (4 mL) was degassed and heated to 90° C. for 20′ under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 15% ethyl acetate/hexanes to yield 150 mg of methyl 5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate.
methyl 5-{2-[(3,5- dimethylphenyl) amino]-4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}-2- methoxypyridine- 3-carboxylate
A solution of methyl 5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 647, 0.3 mmol, 150 mg) and sodium hydroxide (0.6 mmol, 24 mg) in THF (3 mL) and water (3 mL) was stirred at room temperature for 3 h. THF was removed in vacuo and the reaction mixture was neutralized using 1.5 N HCl. The solid that precipitated out was filtered, washed with water and dried to give the title compound (65 mg).
5-{2-[(3,5- dimthylphenyl) amino]-4-[3- (trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}-2- methoxypyridine- 3-carboxylic acid
A suspension of 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine derivative or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine derivative (1 eq), {3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid or 3-(trans-2-carboxyvinyl)phenylboronic acid (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (20 mol %) and sodium carbonate (1 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform:methanol (9:1) as eluent to give the product. The compounds in the below table were prepared using the above method and the starting material specified.
ethyl (2E)-3-(3-{2-(2,3- dihydro-1H-inden-5- ylamino)-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{2-(2,3- dihydro-1H-inden-5- ylamino)-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
ethyl (2E)-3-(3-{2-(1,3- benzodioxol-5-ylamino)- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoate
ethyl (2E)-3-(3-{2-(1,3- benzodioxol-5-ylamino)- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2- enoate
(2E)-3-[3-(3-{[3- methoxy-5- (methylsulfonyl)phenyl] amino}-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl)phenyl]prop-2-enoic acid
h){3-[(1E)-3-ethoxy-3-oxoprop-1-en-1-yl]phenyl}boronic acid was used
i)3-(trans-2-carboxyvinyl)phenylboronic acid (1.1 eq) and Na2CO3 (2 eq) were used
suspension of 3-(trifluoromethyl)-1H-pyrazole (1.2-1.5 eq), potassium tert-butoxide (1.5 eq) and ethyl(2E)-3-{3-[2-{[3-methoxy-5-(methylsulfonyl)phenyl]amino}-4-(methylsulfonyl)pyrimidin-5-yl]phenyl}prop-2-enoate (Intermediate 249, 1 eq) in DMSO (3 mL) was subjected to microwave irradiation at 130° C. for 1 h. After the reaction was cooled to RT, the mixture was diluted with EtOAc, washed successively with water and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and further purified by silica gel column chromatography using ethyl acetate/hexanes to yield the title compound.
1H NMR
ethyl 92E)-3-{3-[2-{[3- methoxy-5- (methylsulfonyl)phenyl] amino}-4- (methylsulfonyl)pyrimidin- 5-yl]phenyl}prop-2- enoate
To 1 eq of the ethyl(2E)-3-(3-{2-[arylamino]-4-[1H-azol-1-yl]pyrimidin-5-yl}phenyl)prop-2-enoate derivative taken in dioxane (5 mL), was added Barium hydroxide (2-6 eqs) and was warmed to 60° C. for 1 to 2 h. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the desired carboxylic acid. The compounds in the below table were prepared using the above method and the starting material specified.
(2E)-3-(3-{2-(2,3- dihydro-1H-inden-5- ylamino)-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-(2,3- dihydro-1H-inden-5- ylamino)-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-(1,3- benzodioxol-5-ylamino)- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-(1,3- benzodioxol-5-ylamino)- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-[3-(2-{[3- methoxy-5- (methylsulfonyl)phenyl] amino}-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl)phenyl]prop-2-enoic acid
j)Ba(OH)2, dioxane-H2O, RT, 12-24 h
k)Ba(OH)2, dioxane-H-2O, 55° C., 1-2 h
A suspension of 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]-dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 30% ethyl acetate/hexanes as eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
ethyl 5-{2-({1-[(4-methylphenyl)sulfonyl]-1H-indol-5-yl}amino)-4-[5-methyl- 3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate
ethyl 5-{2-(2,3-dihydro-1H-inden-5-ylamino)-4-[3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate
ethyl 5-{2-(2,3-dihydro-1H-inden-5-ylamino)-4-[5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate
ethyl 5-{2-(1,3-benzodioxol-5-ylamino)-4-[3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylate
ethyl 5-{2-(1,3-benzodioxol-5-ylamino)-4-[5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate
A suspension of 5-bromo-N-[3-methoxy-5-(methylsulfonyl)phenyl]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 250) or 5-bromo-N-[3-methoxy-5-(methylsulfonyl)phenyl]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 251) (1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]-dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 50% ethyl acetate/hexanes as eluent to give the product. The compounds in the below table were prepared following this procedure and using the specified starting material.
ethyl 5-(2-{[3-methoxy-5-(methylsulfonyl)phenyl]amino}-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl)pyridine-3-carboxylate
ethyl 5-(2-{[3-methoxy-5-(methylsulfonyl)phenyl]amino}-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl)pyridine-3- carboxylate
To 1 eq of the ethyl 5-(2-{arylamino}-4-[1H-azol-1-yl]pyrimidin-5-yl)pyridine-3-carboxylate derivative taken in dioxane (5 mL), was added 1 N aq. sodium hydroxide/Barium hydroxide (2-6 eqs) and was heated to 60° C. for 1 h. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the desired carboxylic acid. The compounds in the below table were prepared following this procedure and using the specified starting material.
5-{2-({1-[(4-methylphenyl)sulfonyl]-1H-indol-5-yl}amino)-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-(2,3-dihydro-1H-inden-5-ylamino)-4-[3-(trifluoromethyl)-1H-pyrazol- 1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-(2,3-dihydro-1H-inden-5-ylamino)-4-[5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-(1,3-benzodioxol-5-ylamino)-4-[3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-(1,3-benzodioxol-5-ylamino)-4-[5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-(2-{[3-methoxy-5-(methylsulfonyl)phenyl]amino}-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl)pyridine-3-carboxylic acid
5-(2-{[3-methoxy-5-(methylsulfonyl)phenyl]amino}-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl)pyridine-3-carboxylic acid
l)NaOH (4 eq), THF-H2O, RT, 4 h
m)NaOH (2 eq), THF-H2O, 40° C. 6-14 h
n)Ba(OH)2, dioxane-H2O, RT, 12-24 h
o)Ba(OH)2, dioxane-H2O, 55° C., 1 h.
A suspension of 5-bromo-N-(3,5-dimethoxyphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 215, 0.36 mmol, 160 mg), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (0.36 mmol, 106 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.073 mmol, 60 mg) and sodium carbonate (0.36 mmol, 40 mg) in acetonitrile/water (5:1) was degassed and heated to 100° C. for 45 min under an inert atmosphere. The reaction mass was passed through a celite bed. The solvent was concentrated in vacuo and the resultant crude mass was taken in EtOAc (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography to give the title compound (120 mg).
methyl 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate
To 120 mg of methyl 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 674, 0.22 mmol) dissolved in a mixture of dioxane (1 mL) and water (0.33 mL), was added Barium hydroxide monohydrate (0.6 mmol, 114 mg) and allowed to stir overnight at room temperature. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl and then diluted with ethyl acetate (50 mL), washed with water, brine, dried over Na2SO4 and concentrated to yield 70 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3,5-dimethoxyphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 216, 0.44 mmol, 200 mg) methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (0.48 mmol, 141 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.087 mmol, 64 mg) and sodium carbonate (0.44 mmol, 46 mg) in acetonitrile/water (8:2) was degassed and heated to 90° C. for 15 min under an inert atmosphere. After completion of the reaction, the reaction mass was diluted with ethyl acetate (30 mL). The organic layer was separated, washed with water and brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using ethyl acetate/hexanes (45:55) to obtain 150 mg of Example 676.
methyl 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxypyridine-3-carboxylate
To 150 mg of methyl 5-[2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 676, 0.27 mmol) taken in a mixture of tetrahydrofuran (1.5 mL), was added 1 N aq. sodium hydroxide (1.07 mmol) and stirred in a room temperature for 4 h. After completion of reaction, reaction mixture was then carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield 120 mg Example 677.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxypyridine-3-carboxylic acid
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 635, 0.56 mmol, 270 mg), triethylamine (1.67 mmol, 0.23 mL, 0.17 g) and methylamine hydrochloride (1.11 mmol, 75 mg) in dichloromethane was added T3P in 50% EtOAc (1.11 mmol, 0.7 mL, 353 mg) at 0° C. The reaction mixture was slowly raised to room temperature and stirred overnight. After completion of the reaction, the mixture was then diluted with dichloromethane (15 mL), and the organic layer was successively washed with water (2×20 mL), 10% aq sodium bicarbonate solution (15 mL) and brine. The organic layer was dried over sodium sulphate and concentrated. The crude material was purified by silica gel column chromatography (230-400 mesh) using 8% methanol/chloroform to yield 80 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}-N-methylpyridine-3-carboxamide
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 636, 0.35 mmol, 175 mg), triethylamine (1.05 mmol, 0.14 mL, 106 mg) and methylamine hydrochloride (0.70 mmol, 47 mg) in dichloromethane (10 mL) was added T3P (50% EtOAc) (0.70 mmol, 0.45 mL, 223 mg) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 3 h. The reaction mixture was then diluted with dichloromethane (15 mL) and the dichloromethane layer was washed successively with water (2×20 mL), 10% aq sodium bicarbonate solution (15 mL) and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and dried to yield 120 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N- methylpyridine-3-carboxamide
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 635, 0.41 mmol, 200 mg), triethylamine (0.82 mmol, 0.12 mL, 80 mg) and methoxylamine hydrochloride (0.5 mmol, 42 mg) in dichloromethane, was added. TBTU (0.49 mmol, 158 mg) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred overnight. The reaction mixture was then diluted with dichloromethane (15 mL) and the dichloromethane solution was washed successively with water (2×20 mL), 10% aq sodium bicarbonate solution (20 mL) and brine. The organic layer was dried over sodium sulphate, and concentrated. The crude material was purified by silica gel column chromatography using 8% methanol/chloroform to yield 90 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}-N-methoxypyridine-3-carboxamide
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 636, 0.34 mmol, 170 mg), triethylamine (0.68 mmol, 0.1 mL) and methoxylamine hydrochloride (0.51 mmol, 43 mg) in dichloromethane, was added TBTU (131 mg, 0.41 mmol, 1.2 eq) at 0° C. The reaction mixture was slowly raised to room temperature and stirred overnight. The reaction mixture was then diluted with dichloromethane (15 mL) and the dichloromethane solution was washed successively with water (2×20 mL), 10% aq. sodium bicarbonate solution (20 mL) and brine. The organic layer was dried over sodium sulphate, filtered, concentrated and dried to yield 120 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N- methoxypyridine-3-carboxamide
To a mixture of T3P (4.11 mmol, 1.3 g) and Et3N (5.14 mmol, 520 mg) taken in dry dichloromethane (20 mL), was added ethanolamine (2.03 mmol, 128 mg). Then 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 635, 1.03 mmol, 500 mg) in dry THF (20 mL) was added slowly for 15 min. The reaction mixture was stirred overnight at room temperature. The solvent was removed in vacuo, water was added and extracted with EtOAc. The organic layer was further washed with brine, dried over Na2SO4 and concentrated. The crude mass was purified by column chromatography (230-400 mesh) using 10% MeOH/dichloromethane as an eluent to yield 120 mg product. The compound was further purified by RP-HPLC (Atlantis C18 column (19×250 mm; 10 μm); using a binary solvent mixture of 0.1% TFA in water (A)/MeOH (B) (0-20 min: 10-65% B, 20-30 min: 65-75% B and 30-40 min: 75-100% B; flow rate of 15 mL/min; Separation was monitored at 210 and 290 nm) to get 0.057 g of the pure title compound
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}-N-(2-hydroxyethyl)pyridine-3- carboxamide
To 100 mg of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 636, 0.19 mmol) in dry dichloromethane (1 mL), was added Et3N (1.19 mmol, 0.121 g) with constant stiffing. To this solution, TBTU (0.51 mmol, 0.167 g) and HOBt (0.51 mmol, 0.070 g) were added and the reaction mixture was stirred for 15 min. Then ethanolamine (0.47 mmol, 0.029 g) was added and allowed to stir for 12 h. The reaction mixture was diluted with dichloromethane and the organic layer was further washed with brine and 10% NaHCO3 solution, dried over Na2SO4 and concentrated. The crude mass was purified by column chromatography (230-400 mesh) using 2% MeOH/CHCl3 as an eluent to yield a solid. The solid obtained was dissolved in minimum amount of dry dichloromethane and n-hexane was added to it and stirred for 1 h. The precipitate was filtered and dried under vacuum to give the title compound as a brown solid (20 mg).
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N-(2- hydroxyethyl)pyridine-3-carboxamide
To 100 mg of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 635, 0.21 mmol) taken in dry dichloromethane (1 mL), was added Et3N (1.23 mmol, 0.125 g) with constant stiffing. To this solution, TBTU (0.53 mmol, 0.171 g) followed by HOBt (0.53 mmol, 0.072 g) were added and the reaction mixture was left for stirring for 15 min. Then 2-aminoethylmethylsulfone hydrochloride (0.38 mmol, 61 mg) was added and allowed to stir for 12 h. The reaction mixture was diluted with dichloromethane and the organic layer was further washed with brine and 10% NaHCO3 solution, dried over Na2SO4 and concentrated. The crude mass was purified by column chromatography (230-400 mesh) using 1.5% MeOH/CHCl3 as an eluent to yield a solid. The solid obtained was dissolved in minimum amount of dry dichloromethane and n-hexane was added to it and stirred for 1 h. The precipitate was filtered and dried under vacuum to yield the title compound as a fine white solid (30 mg).
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}-N-[2-(methylsulfonyl)ethyl] pyridine-3-carboxamide
To 100 mg of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 636, 0.19 mmol) taken in dry dichloromethane (1 mL), was added Et3N (0.49 mmol, 0.051 g) with constant stirring. To this HATU (0.25 mmol, 0.099 g) followed by HOAt (0.25 mmol, 0.035 g) were added and stirred for 15 min. Then 2-aminoethylmethylsulfone hydrochloride (0.19 mmol, 0.03 g) was added and the reaction mixture allowed to stir for 12 h. The reaction mixture was diluted with dichloromethane and the organic layer was further washed with brine and 10% NaHCO3 solution, dried over Na2SO4 and concentrated. The crude mass was purified by column chromatography (230-400 mesh) using 3% MeOH/CHCl3 as an eluent to yield a solid. The solid obtained was dissolved in minimum amount of dry dichloromethane and n-hexane was added to it and stirred for 1 h. The precipitate was filtered and dried under vacuum to get the title compound as an off-white solid (60 mg).
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N-[2- (methylsulfonyl)ethyl]pyridine-3-carboxamide
A suspension of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 635, 0.41 mmol, 0.2 g), methane sulfonamide (1.02 mmol, 0.097 g), HATU (0.533 mmol, 0.2 g) HOAt (0.533 mmol, 0.072 g) and triethylamine (1.23 mmol, 0.124 g) in dichloromethane (2 mL) was stirred at room temperature for 4 h. The reaction mixture was diluted with dichloromethane (5 mL), washed with 10% sodium bicarbonate solution (5×2 mL), water (5 mL) and brine (5 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. Then the crude mass was purified by RP-HPLC (Sunfire C18 column (19×250 mm; 10 μm); using a binary solvent mixture of 10 mM aq. NH4OAc (A)/MeCN (B) (0-20 min: 10-60% B, 20-30 min: 60% B; 30-40 min: 60-70% B and 40-50 min: 70-100% B; flow rate of 15 mL/min; Separation was monitored at 210 and 300 nm) to get 0.04 g of Example 686.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- (methylsulfonyl)- pyridine-3-carboxamide
A suspension of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 636, 0.1 g, 0.2 mmol), methane sulfonamide (0.5 mmol, 0.047 g), HATU (0.26 mmol, 0.099 g), HOAt (0.26 mmol, 0.035 g) and triethylamine (0.6 mmol, 0.061 g) in dichloromethane (1 mL) was stirred at room temperature for 4 h. After completion of reaction, the reaction mixture was diluted with dichloromethane (2 mL) and washed with 10% sodium bicarbonate solution (2×2 mL), water (2 mL) and brine (2 mL), dried over anhydrous Na2SO4 and concentrated under reduced pressure. Then the crude mass was purified by column chromatography (230-400 mesh) using 3% MeOH/CHCl3 as an eluent to yield to get 0.04 g of Example 687.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- (methylsulfonyl)- pyridine-3-carboxamide
A suspension of 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), 3-(trans-2-carboxyvinyl)phenylboronic acid (1.1-1.5 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (20 mol %) and sodium carbonate (1.5-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform:methanol (9:1) as eluent to give the product. The compounds in the below table were prepared using this procedure and the starting material indicated.
(2E)-3-(3-{2-[(3- acetylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- acetylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- carbamoylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- carbamoylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- cyanophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- cyanophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- methylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3- methylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
c)35 mol % XPHOS was also used.
A suspension of 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 30% ethyl acetate/hexanes as eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
ethyl 5-{2-[(3- acetylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- acetylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- carbamoylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- carbamoylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- cyanophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- cyanophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- methylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3- methylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
d)35 mol % XPHOS was also used.
To 1 eq of ethyl 5-(2-{arylamino}-4-[1H-azol-1-yl]pyrimidin-5-yl)pyridine-3-carboxylate taken in dioxane and water, was added sodium hydroxide (2-2.5 eq) and stirred at RT for 4 h. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the desired carboxylic acid.
5-{2-[(3- acetylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3- acetylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3- carbamoylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3- carbamoylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3- cyanophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3- cyanophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3- methylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
5-{2-[(3- methylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
e)NaOH (2.5 eq), MeCN—H2O, reflux, 15 min
f)NaOH (2.5 eq), THF-H2O, RT, 5 h
g)Ba(OH)2 (2 eq), dioxane-H2O, RT.
A suspension of 5-bromopyrimidine derivative (1 eq), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]-dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 50% ethyl acetate/hexanes as eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
methyl 5-{2-[(3- acetylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-11-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylate
methyl 5-{2-[(3- acetylphenyl)amino]- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylate
methyl 5-{2-[(3- carbamoylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridine-3- carboxylate
methyl 5-{2-[(3- carbamoylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylate
methyl 5-{2-[(3- cyanophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylate
methyl 5-{2-[(3- cyanophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylate
methyl 2-methoxy-5-{2- [(3- methylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
methyl 2-methoxy-5-{2- [(3- methylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylate
h)35 mol % XPHOS was also used.
To 1 eq of methyl 5-(2-{arylamino}-4-[1H-azol-1-yl]pyrimidin-5-yl)-2-methoxypyridine-3-carboxylate taken in dioxane (5 mL), was added 1 N aq. sodium hydroxide or Barium hydroxide (2-6 eqs) and was heated to 60° C. for 1 h. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the desired carboxylic acid. The compounds in the below table were prepared using this method and the specified starting material.
5-{2-[(3- acetylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylic acid
5-{2-[(3- acetylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylic acid
5-{2-[(3- carbamoylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridine-3- carboxylic acid
5-{2-[(3- carbamoylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylic acid
5-{2-[(3- cyanophenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylic acid
5-{2-[(3- cyanophenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}-2- methoxypyridine-3- carboxylic acid
2-methoxy-5-{2-[(3- methylphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
2-methoxy-5-{2-[(3- methylphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3- carboxylic acid
i)NaOH (2 eq), THF-H2O, RT, 5 h
j)Ba(OH)2 (2 eq), dioxane-H2O, RT
k)NaOH (4 eq), THF-H2O, RT, 4 h.
A suspension of (2E)-3-(3-{2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}phenyl)prop-2-enoic acid (Intermediate 268, 1 eq) or (2E)-3-(3-{2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}phenyl)prop-2-enoic acid (Intermediate 269, 1 eq), 3-amino-5-methoxybenzonitrile (1 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (20 mol %) and sodium carbonate (2 eq) in acetonitrile/water (5:1) was heated to 90° C. for 30 min. The reaction mixture was concentrated, the residue was taken in ethyl acetate and washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using MeOH/CHCl3 as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
1H NMR
(2E)-3-(3-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}phenyl)prop-2-enoic acid
(2E)-3-(3-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}phenyl)prop-2-enoic acid
A suspension of ethyl 5-{2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 270, 1 eq) or ethyl 5-{2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 271, 1 eq), 3-amino-5-methoxybenzonitrile (1.2 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (20 mol %) and sodium carbonate (1 eq) in acetonitrile/water (5:1) was heated to 90° C. for 30 minutes. The reaction mixture was concentrated. The residue taken in ethyl acetate was washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
1H NMR
ethyl 5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
ethyl 5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3-carboxylate
To ethyl 5-{2-[(3-cyano-5-methoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate (Example 730, 1 eq) or ethyl 5-{2-[(3-cyano-5-methoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate (Example 731, 1 eq) taken in a mixture of dioxane (5 mL) and water (5 mL), was added sodium hydroxide (2.5 eq) and stirred at room temperature for 3-5 h. The reaction mixture was carefully acidified with 1 N HCl and further extracted with ethyl acetate (50 mL). The organic layer was washed with water and brine, dried over Na2SO4 and concentrated to give the product. The compounds in the below table were prepared using this method and the specified starting material.
1H NMR
5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3-carboxylic acid
A suspension of methyl 5-{2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Intermediate 325, 1 eq) or methyl 5-{2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Intermediate 273, 1 eq), 3-amino-5-methoxybenzonitrile (1.0 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (20 mol %) and sodium carbonate (1 eq) in acetonitrile/water (5:1) was heated to 90° C. for 30 min. The reaction mixture was concentrated. The residue was taken in ethyl acetate, washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
1H NMR
methyl 5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylate
methyl 5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxypyridine-3- carboxylate
To methyl 5-{2-[(3-cyano-5-methoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 734, 1 eq) or methyl 5-{2-[(3-cyano-5-methoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 735, 1 eq) dissolved in a mixture of dioxane (5 mL) and water (5 mL), was added sodium hydroxide (2.5 eq) and stirred at room temperature for 3-5 h. The reaction mixture was carefully acidified with 1 N HCl and further extracted with ethyl acetate (50 mL). The organic layer was washed with water and brine, dried over Na2SO4 and concentrated. The compounds in the below table were prepared using this method and the specified starting material.
1H NMR
5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylic acid
5-{2-[(3-cyano-5- methoxyphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxypyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chlorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine Intermediate 276 or 5-bromo-N-(3-chlorophenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine Intermediate 277 (1 eq), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (10 mol %) and sodium carbonate (1.1 eq) in acetonitrile/water (4:1) was degassed and heated to 100° C. for 45 minutes under an inert atmosphere. The reaction mass was passed through a celite bed. The solvent was concentrated in vacuo and the resultant crude mass was taken in CHCl3 (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 1:1 ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
methyl 5-{2-[(3-chlorophenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylate
methyl 5-{2-[(3-chlorophenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxypyridine-3-carboxylate
A suspension of 5-bromo-N-(3-chlorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(3-chlorophenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), (1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1 eq), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (10 mol %) and sodium carbonate (1.1 eq) in acetonitrile/water (4:1) was degassed and heated to 100° C. for 45 min. The reaction mass was passed through a celite bed. The solvent was concentrated in vacuo and the resultant crude mass was taken in CHCl3 (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 1:1 ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this method and the specified starting material.
ethyl 5-{2-[(3-chlorophenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
ethyl 5-{2-[(3-chlorophenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
To a suspension of ester derivative (100 mg, 1 eq) taken in a mixture of dioxane (1 mL) and water (0.33 mL), was added Barium hydroxide (2 eq) and the mixture was allowed to stir at 45° C. for 2 h. The mixture was carefully acidified with 1 N HCl and the precipitate formed was filtered, washed with water and dried to yield the product. The compounds in the below table were prepared using this method and the specified starting material.
5-{2-[(3-chlorophenyl)amino]-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3- carboxylic acid
5-{2-[(3-chlorophenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxypyridine-3-carboxylic acid
5-{2-[(3-chlorophenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
Ester derivative (100 mg, leq) was dissolved in tetrahydrofuran (3 mL) and treated with potassium trimethyl silanolate (10 eq) and allowed to stir at room temperature for 1 h. The solvent was concentrated in vacuo and the resultant crude mass was carefully acidified with 1 N HCl, then diluted with ethyl acetate (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using chloroform:methanol (9:1) as an eluent to yield the product. The compound in the below table was prepared using this method and the specified starting material.
5-{2-[(3-chlorophenyl)amino]-4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
A suspension of 5-bromopyrimidine derivative (1 eq), methyl 2-methoxy-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]-dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 minutes under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 50% ethyl acetate/hexanes as eluent. The compounds in the below table were prepared using this procedure and the specified starting material.
methyl 5-{2-[(3-fluoro-5-methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxypyridine-3-carboxylate
methyl 5-{2-[(3-fluoro-5-methylphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxypyridine-3-carboxylate
methyl 5-{2-[(2-fluoro-5-methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylate
methyl 5-{2-[(2-fluoro-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate
methyl 5-{2-[(3-chloro-5-methoxyphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3-carboxylate
methyl 5-{2-[(3-chloro-5-methoxyphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate
methyl 2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
methyl 2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3-carboxylate
To 1 eq of methyl 5-(2-{arylamino}-4-[1H-azol-1-yl]pyrimidin-5-yl)-2-methoxypyridine-3-carboxylate taken in dioxane (5 mL), was added 1 N aq. Barium hydroxide (2 eq) and stirred for the amount of time indicated in the below table. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the carboxylic acid product. The compounds in the below table were prepared using this procedure and the specified starting material.
5-{2-[(3-fluoro-5-methylphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylic acid
5-{2-[(3-fluoro-5-methylphenyl)amino]-4-[5-methyl- 3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylic acid
5-{2-[(2-fluoro-5-methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylic acid
5-{2-[(2-fluoro-5-methylphenyl)amino]-4-[5-methyl- 3-(trifluoromethyl)-1H-pyrazol-01-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylic acid
5-{2-[(3-chloro-5-methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylic acid
5-{2-[(3-chloro-5-methoxyphenyl)amino]-4-[5-methyl- 3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}- 2-methoxypyridine-3-carboxylic acid
2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]-4- [3-(trifluoromethyl)-1-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
b)45° C., 2 h,
c)40° C., 2 h,
d)50° C., 45 min
e)Purified by preparative HPLC
A suspension of 5-bromo-N-(aryl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine or 5-bromo-N-(aryl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (1 eq), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (1.1-1.2 eq), [1,1′-bis(diphenylphosphino)ferrocene]-dichloropalladium(II) (10-20 mol %) and sodium carbonate (1-2 eq) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 15-30 min under inert atmosphere. The solvent was removed in vacuo and the crude mixture taken in CHCl3 was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using 30% ethyl acetate/hexanes as eluent to give the product. The compounds in the below table were prepared using this procedure and the specified starting material.
ethyl 5-{2-[(3-fluoro-5-methylphenyl)amino]-4-[3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate
ethyl 5-{2-[(3-fluoro-5-methylphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(2-fluoro-5-methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
ethyl 5-{2-[(2-fluoro-5-methylphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3- carboxylate
ethyl 5-{2-[(3-chloro-5-methoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
ethyl 5-{2-[(3-chloro-5-methoxyphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylate
ethyl 5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridin-3-carboxylate
ethyl 5-{2-[(3-methoxy-5-methylphenyl)amino]-4- [5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3-carboxylate
To 1 eq of ethyl 5-(2-{arylamino}-4-[1H-azol-1-yl]pyrimidin-5-yl)pyridine-3-carboxylate taken in dioxane (5 mL), was added 1 N aq. Barium hydroxide (2 eq) and stirred for the time indicated in the below table. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the carboxylic acid product. The compounds in the below table were prepared using this procedure and the specified starting material.
5-{2-[(3-fluoro-5-methylphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-fluoro-5-methylphenyl)-amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-[(2-fluoro-5-methylphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(2-fluoro-5-methylphenyl)-amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-[(3-chloro-5-methoxyphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-chloro-5-methoxyphenyl)-amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
f)overnight, RT,
g)6 h, RT,
h)40° C., 2 h,
i)50° C., 45 min
A suspension of methyl 5-{2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Intermediate 325, 1 eq) or methyl 5-{2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Intermediate 273, 1 eq), 3-amino-5-methylbenzonitrile (1.0 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (20 mol %) and sodium carbonate (1 eq) in acetonitrile/water (5:1) was heated to 90° C. for 30 min. The reaction mixture was concentrated. The residue was taken in ethyl acetate, washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this procedure and the specified starting material.
methyl 5-{2-[(3-cyano-5-methylphenyl)-amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxypyridine-3-carboxylate
methyl 5-{2-[(3-cyano-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate
To 1 eq of methyl 5-{2-[(3-cyano-5-methylphenyl)amino]-4-[1H-azol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate taken in dioxane (5 mL), was added 1 N aq. sodium hydroxide (1-3 eqs) and stirred at RT for 1 h. The reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the carboxylic acid product. The compounds in the below table were prepared using this procedure and the specified starting material.
5-{2-[(3-cyano-5-methylphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3-carboxylic acid
5-{2-[(3-cyano-5-methylphenyl)-amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid
j)(2 eq NaOH),
k)(3 eq NaOH).
A suspension of ethyl 5-{2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 270, 1 eq) or ethyl 5-{2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate (Intermediate 271, 1 eq), 3-amino-5-methylbenzonitrile (1.2 eq), tris(dibenzylideneacetone)dipalladium(0) (10 mol %), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (20 mol %) and sodium carbona eq) in acetonitrile/water (5:1) was heated to 90° C. for 30 min. The reaction mixture was concentrated. The residue taken in ethyl acetate was washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using ethyl acetate/hexanes as an eluent to give the product. The compounds in the below table were prepared using this procedure and the specified starting material.
ethyl 5-{2-[(3-cyano-5-methylphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylate
ethyl 5-{2-[(3-cyano-5-methylphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3- carboxylate
To 1 eq of ethyl 5-{2-[(3-cyano-5-methylphenyl)amino]-4-[1H-azol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylate taken in dioxane (5 mL), was added 1 N aq. sodium hydroxide (1-3 eq) and stirred at RT for 1 h. After completion of reaction, reaction mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered, washed with water and dried in vacuo to yield the carboxylic acid product. The compounds in the below table were prepared using this procedure and the specified starting material.
5-{2-[(3-cyano-5-methylphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridine-3-carboxylic acid
5-{2-[(3-cyano-5-methylphenyl)-amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}pyridine-3-carboxylic acid
l)(1 eq NaOH),
m)(3 eq NaOH).
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 113, 0.75 mmol, 0.340 g), a mixture of {5-(methoxycarbonyl)-6-[(1-methylpyrrolidin-3-yl)oxy]pyridin-3-yl}boronic acid and methyl 2-[methylpyrrolidin-3-yl)oxy]-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (Intermediate 297, 1.5 mmol based on the boronic acid, 0.423 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.15 mmol, 0.109 g) and sodium carbonate (0.75 mmol, 0.074 g) in acetonitrile/water (5:1) was degassed and heated to 90° C. for 15 min under an inert atmosphere. The reaction mass was passed through a celite bed and solvent was concentrated in vacuo. The resultant residue taken in EtOAc (50 mL) was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude mass was further purified by silica gel column chromatography (eluted with 3% Et3N in EtOAc) to yield 0.210 g of the product.
methyl 5-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- [(1-methylpyrrolidin-3- yl)oxy]pyridine-3- carboxylate
To 130 mg of methyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-[(1-methylpyrrolidin-3-yl)oxy]pyridine-3-carboxylate (Example 786, 0.2 mmol) taken in a mixture of THF (5 mL) and water (5 mL), was added Barium hydroxide monohydrate (0.162 g, 0.8 mmol) and stirred at room temperature for 7 h. The mixture was carefully acidified with 1 N HCl. It was extracted with ethyl acetate (50 mL) and the organic layer was washed with water and brine, dried over Na2SO4 and concentrated to yield 85 mg of Example 787.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- [(1-methylpyrrolidin-3- yl)oxy]pyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 115, 1.1 mmol, 0.5 g), a mixture of {5-(methoxycarbonyl)-6-[(1-methylpyrrolidin-3-yl)oxy]pyridin-3-yl}boronic acid and methyl 2-[methylpyrrolidin-3-yl)oxy]-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (Intermediate 297, 2.3 mmol based on the boronic acid, 0.644 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.22 mmol, 0.160 g) and sodium carbonate (1.1 mmol, 0.116 g) in acetonitrile/water (20:5, v/v) was degassed and heated to 90° C. for 15 min under an inert atmosphere. The reaction mass was passed through a celite bed. The solvent was concentrated in vacuo and the resultant crude mass was taken in EtOAc (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude mass was further purified by silica gel column chromatography (eluted with 4% Et3N in EtOAc) to yield 0.240 g of the product.
methyl 5-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- [(1-methylpyrrolidin-3- yl)oxy]pyridine-3- carboxylate
To 180 mg of methyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-[(1-methylpyrrolidin-3-yl)oxy]pyridine-3-carboxylate (Example 788, 0.3 mmol, 1 eq) taken in a mixture of THF (5 mL) and water (5 mL), was added Barium hydroxide monohydrate (0.231 g, 1.2 mmol, 4 eq) and stirred at room temperature for 7 h. The mixture was carefully acidified with 1 N HCl. It was extracted with ethyl acetate (50 mL) and the organic layer was washed with water and brine, dried over Na2SO4 and concentrated to yield 120 mg of the product.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- [(1-methylpyrrolidin-3- yl)oxy]pyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 113, 0.97 mmol, 0.440 g), a mixture of methyl 2-[1-(pyridin-4-yl)ethoxy]-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate and {5-(methoxycarbonyl)-6-[1-(pyridin-4-yl)ethoxy]pyridin-3-yl}boronic acid (Intermediate 300, 1.46 mmol based on the boronic acid, 0.442 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.2 mmol, 0.159 g) and sodium carbonate (0.97 mmol, 0.103 g) in acetonitrile/water (4:1) was degassed and heated to 90° C. for 30 min under an inert atmosphere. The reaction mixture was diluted with EtOAc (50 mL), washed with water and brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography (product eluted with 45% ethyl acetate/hexanes) to yield 0.440 g of product.
methyl 5-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- [1-(pyridin-4- yl)ethoxy]pyridine-3- carboxylate
To 162 mg of methyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-[1-(pyridin-4-yl)ethoxy]pyridine-3-carboxylate (Example 790, 0.25 mmol, 0.162 g) taken in a mixture of dioxane (4 mL) and water (4 mL) was added Barium hydroxide monohydrate (0.51 mmol, 0.098 g) and stirred at 50° C. for 1 h. After completion of the reaction, the mixture was then carefully acidified with 1 N HCl. It was then extracted with ethyl acetate (50 mL), and the organic layer was washed with water and brine, dried over Na2SO4 and concentrated to yield 120 mg of the title compound.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- [1-(pyridin-4- yl)ethoxy]pyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 115, 0.95 mmol, 0.415 g), a mixture of methyl 2-[1-(pyridin-4-yl)ethoxy]-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate and {5-(methoxycarbonyl)-6-[1-(pyridin-4-yl)ethoxy]pyridin-3-yl}boronic acid (Intermediate 300, 1.42 mmol based on the boronic acid, 0.431 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.19 mmol, 0.155 g) and sodium carbonate (0.95 mmol, 0.101 g) in acetonitrile/water (5:1) was degassed and heated to 90° C. for 30 min under an inert atmosphere. The solvent was concentrated in vacuo and the resultant crude mass was taken in EtOAc (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude mass was purified by silica gel column chromatography (product eluted with 45% ethyl acetate/hexanes) to yield 0.415 g of the product.
methyl 5-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- [1-(pyridin-4- yl)ethoxy]pyridine-3- carboxylate
To 100 mg of methyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-pyrazol-1-yl]pyrimidin-5-yl}-2-[1-(pyridin-4-yl)ethoxy]pyridine-3-carboxylate (Example 792, 0.16 mmol) taken in a mixture of dioxane (4 mL) and water (4 mL), was added Barium hydroxide monohydrate (0.32 mmol, 0.062 g) and allowed to stir overnight at room temperature. The mixture was then carefully acidified with 1 N HCl and then diluted with ethyl acetate (50 mL), washed with water and brine, dried over Na2SO4 and concentrated. It was further purified by column chromatography using 1% MeOH in CHCl3 to yield 0.080 g of the product.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- [1-(pyridin-4- yl)ethoxy]pyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 113, 1.11 mmol, 0.5 g), a mixture of {6-[2-(1H-imidazol-1-yl)ethoxy]-5-(methoxycarbonyl)pyridin-3-yl}boronic acid and methyl 2-[2-(1H-imidazol-1-yl)ethoxy]-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (Intermediate 303, 1.66 mmol based on the boronic acid, 0.486 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.22 mmol, 0.162 g) and sodium carbonate (1.1 mmol, 0.117 g) in acetonitrile/water (5:1) was degassed and heated to 90° C. for 1 h under an inert atmosphere. The solvent was concentrated in vacuo and the resultant crude mass taken in EtOAc (50 mL), was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was further purified by silica gel column chromatography (product eluted with 0.5% Et3N in EtOAc) to yield 0.31 g of the product.
methyl 5-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- [2-(1H-imidazol-1- yl)ethoxy]pyridine-3- carboxylate
To 170 mg of methyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-[2-(1H-imidazol-1-yl)ethoxy]pyridine-3-carboxylate (Example 794, 0.27 mmol) taken in a mixture of dioxane (20 mL) and water (20 mL), was added Barium hydroxide monohydrate (0.27 mmol, 0.052 g) and the reaction mixture warmed to 50° C. for 24 h. Another equivalent of Barium hydroxide monohydrate (0.27 mmol, 0.052 g) was added and the reaction continued at 50° C. for 3 h more. The mixture was then carefully acidified with 1 N HCl. It was extracted with ethyl acetate (50 mL) and the organic layer was washed with water and brine, dried over Na2SO4 and concentrated to yield 0.112 g of Example 795.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- [2-(1H-imidazol-1- yl)ethoxy]pyridine-3- carboxylic acid
A suspension of 5-bromo-N-(3-chloro-4-fluorophenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 115, 1.14 mmol, 0.5 g), a mixture of {6-[2-(1H-imidazol-1-yl)ethoxy]-5-(methoxycarbonyl)pyridin-3-yl}boronic acid and methyl 2-[2-(1H-imidazol-1-yl)ethoxy]-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate (Intermediate 303, 1.72 mmol based on the boronic acid, 0.502 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium (II) (0.22 mmol, 0.167 g) and sodium carbonate (1.14 mmol, 0.121 g) in acetonitrile/water (3:1) was degassed and heated to 90° C. for 1 h under an inert atmosphere. The solvent was concentrated in vacuo and the resultant crude mass was taken in EtOAc (50 mL), washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude material was further purified by silica gel column chromatography (product eluted with 0.5% Et3N in EtOAc) to yield 0.24 g of the product.
methyl 5-{2-[(3- chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- [2-(1H-imidazol-1- yl)ethoxy]pyridine-3- carboxylate
To 75 mg of methyl 5-{2-[(3-chloro-4-fluorophenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-[2-(1H-imidazol-1-yl)ethoxy]pyridine-3-carboxylate (Example 796, 0.12 mmol) taken in a mixture of dioxane (20 mL) and water (20 mL), was added Barium hydroxide monohydrate (0.48 mmol, 0.094 g) and warmed to 50° C. for 3 h. The mixture was then carefully acidified with 1 N HCl. It was extracted with ethyl acetate (50 mL) and the organic layer was washed with water and brine, dried over Na2SO4 and concentrated to yield 0.05 g of the title compound.
5-{2-[(3-chloro-4- fluorophenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-2- [2-(1H-imidazol-1- yl)ethoxy]pyridine-3- carboxylic acid
A suspension of methyl 5-{2-chloro-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Intermediate 325, 0.73 mmol, 0.30 g), 3-chloro-5-methylaniline (0.87 mmol, 0.12 g), tris(dibenzylideneacetone)dipalladium(0) (0.073 mmol, 0.07 g), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (0.15 mmol, 0.07 g) and sodium carbonate (0.73 mmol, 0.08 g) in acetonitrile/water (25 mL:6 mL) was heated to 90° C. for 30 min. The reaction mixture was concentrated. The residue was taken in ethyl acetate, washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 25% ethyl acetate/hexanes as an eluent to yield 0.200 g of Example 798.
1H NMR
methyl 5-{2-[(3-chloro-5- methylphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylate
To 185 mg of methyl 5-{2-[(3-chloro-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 798, 0.36 mmol) taken in a mixture of dioxane (5 mL) and water (5 mL), was added sodium hydroxide (0.9 mmol, 36 mg) and stirred at room temperature for 3 h. The reaction mixture was carefully acidified with 1 N HCl and further extracted with ethyl acetate (50 mL). The organic layer was washed with water and brine, dried over Na2SO4 and concentrated. The residue was dissolved in a minimum amount of CH2Cl2, then hexanes was added and the solid that precipitated was filtered, washed and dried in vacuo to yield 85 mg of the title compound.
1H NMR
5-{2-[(3-Chloro-5- methylphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxypyridine-3- carboxylic acid
To a solution of 5-{2-[(3-chloro-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 799, 0.089 mmol, 45 mg) in CH2Cl2 (5 mL), were added methanesulfonamide (0.22 mmol, 21 mg), 2-chloro-1-methylpyridinium iodide (0.11 mmol, 28 mg), 4-(Dimethylamino)pyridine (0.018 mmol, 2.1 mg) and triethylamine (0.27 mmol, 30 mg), and the solution stirred for 90 min at RT. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 30 mg of Example 800 as an off-white solid.
1H NMR
5-{2-[(3-chloro-5- methylphenyl)amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxy-N- (methylsulfonyl)pyridine-3- carboxamide
A suspension of methyl 5-{2-chloro-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Intermediate 327, 0.82 mmol, 0.35 g), 3-chloro-5-methylaniline (0.98 mmol, 0.14 g), tris(dibenzylideneacetone)dipalladium(0) (0.08 mmol, 0.075 g), 2-dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl (0.16 mmol, 0.08 g) and sodium carbonate (0.8 mmol, 0.09 g) in acetonitrile/water (25 mL:6 mL) was heated to 90° C. for 30 min. The reaction mixture was concentrated. The residue was taken in ethyl acetate, washed with water and brine. The organic layer was separated, dried over sodium sulfate, filtered and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 20-25% ethyl acetate/hexanes as an eluent to yield 0.230 g of Example 801.
1H NMR
methyl 5-{2-[(3-chloro-5- methylphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxypyridine-3- carboxylate
To 230 mg of methyl 5-12-[(3-chloro-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylate (Example 801, 0.43 mmol) taken in a mixture of dioxane (10 mL) and water (5 mL), was added 1 N aq.sodium hydroxide (1.08 mmol) and stirred overnight at room temperature. The reaction mixture was carefully acidified with 1 N HCl and further extracted with ethyl acetate (50 mL). The organic layer was washed with water and brine, dried over Na2SO4 and concentrated. The oily compound that was obtained was further stirred with hexanes and the solid that precipitated was filtered, and dried in vacuo to yield 150 mg of the title compound.
1H NMR
5-{2-[(3-chloro-5- methylphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxypyridine-3- carboxylic acid
To a solution of 5-{2-[(3-chloro-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 802, 0.22 mmol, 0.115 g) in CH2Cl2 (10 mL), were added methanesulfonamide (0.55 mmol, 52 mg), 2-chloro-1-methylpyridinium iodide (0.27 mmol, 70 mg), 4-(Dimethylamino)pyridine (0.044 mmol, 5.4 mg) and triethylamine (0.06 mmol, 0.1 mL), and the solution stirred for 90 min at RT. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 90 mg of Example 803.
1H NMR
5-{2-[(3-chloro-5- methylphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-methoxy-N- (methylsulfonyl)pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.37 mmol, 200 mg) and 4-(Dimethylamino)pyridine (0.075 mmol, 9 mg) in CH2Cl2 (25 mL) were added Hydrazine monohydrochloride (0.94 mmol, 64 mg), triethylamine (1.89 mmol, 0.255 mL), 2-chloro-1-methylpyridinium iodide (0.47 mmol, 120 mg) and stirred for 2 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 230-400 mesh silica (product eluted with 3-4% methanol/dichloromethane) to afford 100 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridine-3- carbohydrazide
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carbohydrazide (Example 804, 0.18 mmol, 100 mg), 1,1′-carbonyldiimidazole (0.28 mmol, 44 mg), and N,N-diisopropylethylamine (0.28 mmol, 36 mg) in DMF (2 mL) were combined to give a white suspension. The reaction mixture was stirred at room temperature over 1 h, and then stirred at 50° C. for 1 h. The reaction mixture was poured onto ice-water, then extracted with ethyl acetate (50 mL×2) and further washed with water (75 mL) and brine (50 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 230-400 mesh silica (product eluted with 1% methanol/dichloromethane) to afford Example 805 as off-white solid (46 mg).
5-(5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridin-3-yl)- 1,3,4-oxadiazol-2(3H)- one
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.38 mmol, 200 mg) and 4-(Dimethylamino)pyridine (0.077 mmol, 9 mg) in CH2Cl2 (25 mL) were added Hydrazine monohydrochloride (0.97 mmol, 66 mg), triethylamine (1.94 mmol, 2.62 mL), 2-chloro-1-methylpyridinium iodide (0.48 mmol, 124 mg) and stirred 8 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 230-400 mesh silica (product eluted with 3-4% methanol/dichloromethane) to afford 120 mg of Example 806.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridine-3- carbohydrazide
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carbohydrazide (Example 806, 0.36 mmol, 190 mg), 1,1′-carbonyldiimidazole (0.54 mmol, 87 mg), and N,N-diisopropylethylamine (0.54 mmol, 70 mg) in DMF (2 mL) were combined to give a white suspension. The reaction mixture was stirred at room temperature over 1 h, and then stirred at 50° C. for 1 h. The reaction mixture was poured on to ice-water, then extracted with ethyl acetate (50 mL×2) and further washed with water (75 mL) and brine (50 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 230-400 mesh silica (product eluted with 1% methanol/dichloromethane) to afford Example 807 as light brown solid (33 mg).
5-(5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridin-3-yl)- 1,3,4-oxadiazol-2(3H)- one
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.47 mmol, 250 mg), triethylamine (1.41 mmol, 0.2 mL, 0.143 mg) and methylamine hydrochloride (0.94 mmol, 64 mg) in dichloromethane was added T3P (50% w/w solution in EtOAc; 0.94 mmol, 0.6 mL, 300 mg) at 0° C. The reaction mixture was slowly raised to room temperature and stirred 2 h. The mixture was then diluted with dichloromethane (15 mL), and the organic layer was successively washed with water (2×20 mL), 10% aq sodium bicarbonate solution (15 mL) and brine. The organic layer was dried over sodium sulphate and concentrated to yield 180 mg of Example 808.
1H NMR
5-{2-[(3,5- dimethoxyphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxy-N- methylpyridine-3- carboxamide
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.48 mmol, 250 mg), triethylamine (1.46 mmol, 0.20 mL, 145 mg) and methylamine hydrochloride (0.97 mmol, 66 mg) in dichloromethane (10 mL) was added T3P (50% w/w solution in EtOAc, 0.97 mmol, 0.62 mL, 310 mg) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 2 h. The reaction mixture was then diluted with dichloromethane (15 mL) and the dichloromethane layer was washed successively with water (2×20 mL), 10% aq sodium bicarbonate solution (15 mL) and brine. The organic layer was dried over sodium sulphate and concentrated. The crude material was purified by silica gel column chromatography (230-400 mesh) using 2% methanol/chloroform to yield 230 mg of Example 809.
1H NMR
5-{2-[(3,5- dimethoxyphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxy-N- methylpyridine-3- carboxamide
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.47 mmol, 250 mg), triethylamine (0.94 mmol, 0.13 mL, 94 mg) and methoxylamine hydrochloride (0.7 mmol, 59 mg) in dichloromethane, was added TBTU (0.56 mmol, 182 mg) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 2 h. The reaction mixture was then diluted with dichloromethane (15 mL) and the dichloromethane solution was washed successively with water (2×20 mL), 10% aq sodium bicarbonate solution (20 mL) and brine. The organic layer was dried over sodium sulphate, and concentrated to yield 170 mg of Example 810.
1H NMR
5-{2-[(3,5- dimethoxyphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-N,2-dimethoxypyridine- 3-carboxamide
To a mixture of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.48 mmol, 250 mg), triethylamine (0.97 mmol, 0.14 mL, 98 mg) and methoxylamine hydrochloride (0.73 mmol, 61 mg) in dichloromethane, was added TBTU (0.58 mmol, 187 mg) slowly at 0° C. The reaction mixture was slowly raised to room temperature and stirred for 2 h. The reaction mixture was then diluted with dichloromethane (15 mL) and the dichloromethane solution was washed successively with water (2×20 mL), 10% aq sodium bicarbonate solution (20 mL) and brine. The organic layer was dried over sodium sulphate, and concentrated. The crude material was purified by silica gel column chromatography using 2% methanol/chloroform to yield 220 mg of Example 811.
1H NMR
5-{2-[(3,5- dimethoxyphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-N,2-dimethoxypyridine- 3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.28 mmol, 150 mg) and [2-(methylsulfonyl)ethyl]amine (0.71 mmol, 87 mg) in CH2Cl2 (5 mL), were add 2-chloro-1-methylpyridinium iodide (0.35 mmol, 90 mg), 4-(Dimethylamino)pyridine (0.056 mmol, 7 mg) and triethylamine (0.85 mmol, 85 mg), and the solution stirred for 90 min at RT. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 80 mg of Example 812 as an off-white solid.
1H NMR
5-{2-[(3,5- dimethoxyphenyl)amino]-4- [5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxy-N-[2- (methylsulfonyl)ethyl]- pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.29 mmol, 150 mg) and [2-(methylsulfonyl)ethyl]amine (0.72 mmol, 89 mg)in CH2Cl2 (5 mL), were added 2-chloro-1-methylpyridinium iodide (0.36 mmol, 92 mg), 4-(Dimethylamino)pyridine (0.058 mmol, 7 mg) and triethylamine (0.87 mmol, 88 mg), and the solution stirred for 90 min at RT. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 95 mg of Example 813 as an off-white solid.
1H NMR
5-{2-[(3,5- dimethoxyphenyl)amino]-4- [3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxy-N-[2- (methylsulfonyl)ethyl]- pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid Example 675 (0.48 mmol, 0.250 g) in CH2Cl2 (25 mL), were added ethanesulfonamide (Intermediate 328, 1.16 mmol, 0.126 g), triethylamine (1.45 mmol, 0.204 mL), 2-chloro-1-methylpyridinium iodide (0.58 mmol, 0.148 g) and 4-(Dimethylamino)pyridine (0.097 mmol, 0.012 g) and stirred overnight at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1-2% MeOH in CHCl3) to afford 120 mg of white solid of Example 814.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- (ethylsulfonyl)-2- methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.19 mmol, 100 mg) in CH2Cl2 (10 mL), were added ethanesulfonamide (Intermediate 328, 0.47 mmol, 52 mg), triethylamine (0.56 mmol, 57 mg), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 60 mg) and 4-(Dimethylamino)pyridine (0.037 mmol, 4.5 mg) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 40 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- (ethylsulfonyl)-2- methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (0.48 mmol, 0.250 g) in CH2Cl2 (25 mL), were added propane-1-sulfonamide (Intermediate 329, 1.16 mmol, 0.143 g), triethylamine (1.45 mmol, 0.204 mL), 2-chloro-1-methylpyridinium iodide (0.58 mmol, 0.148 g) and 4-(Dimethylamino)pyridine (0.097 mmol, 0.012 g) and stirred overnight at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1.5-2.5% MeOH in CHCl3) to afford 170 mg of Example 816 as a white solid.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}-2-methoxy-N- (propylsulfonyl)pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino] -4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.19 mmol, 100 mg) in CH2Cl2 (10 mL), were added propane-1-sulfonamide (Intermediate 329, 0.47 mmol, 60 mg), triethylamine (0.56 mmol, 57 mg), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 60 mg) and 4-(Dimethylamino)pyridine (0.037 mmol, 4.5 mg) and stirred at RT for 1 h. The reaction mixture was diluted with dichloromethane and further washed with water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 40 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxy-N-(propylsulfonyl) pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.38 mmol, 0.2 g) in CH2Cl2 (10 mL), were added propane-2-sulfonamide (Intermediate 330, 0.58 mmol, 0.07 g), triethylamine (0.86 mmol, 0.12 mL, 86 mg), 2-chloro-1-methylpyridinium iodide (0.45 mmol, 0.116 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 100 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxy-N-(propan-2-ylsulfonyl) pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.37 mmol, 0.2 g) in CH2Cl2 (10 mL), were added propane-2-sulfonamide (Intermediate 330, 0.56 mmol, 0.07 g), triethylamine (1.1 mmol, 0.15 mL), 2-chloro-1-methylpyridinium iodide (0.45 mmol, 0.116 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 130 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxy-N-(propan-2-ylsulfonyl) pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.38 mmol, 0.2 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg) in CH2Cl2 (10 mL), were added 3-(morpholin-4-yl)propane-1-sulfonamide (Intermediate 332, 0.58 mmol, 0.12 g), triethylamine (0.86 mmol, 0.12 mL, 86 mg), 2-chloro-1-methylpyridinium iodide (0.45 mmol, 0.116 g) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH in CHCl3) to afford 70 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl] pyrimidin-5-yl}-2-methoxy-N-{[3-(morpholin-4-yl)propyl]sulfonyl}-pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 677, 0.37 mmol, 0.2 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg) in CH2Cl2 (10 mL) were added 3-(morpholin-4-yl)propane-1-sulfonamide (Intermediate 332, 0.58 mmol, 0.12 g), triethylamine (1.1 mmol, 0.15 mL), 2-chloro-1-methylpyridinium iodide (0.45 mmol, 0.116 g) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 3% MeOH in CHCl3) to afford 130 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-2-methoxy-N-{[3-(morpholin-4-yl)propyl]sulfonyl} pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 648, 0.52 mmol, 0.250 g) and 4-(Dimethylamino)pyridine (0.104 mmol, 0.013 g) in CH2Cl2 (25 mL) were added ethanesulfonamide (Intermediate 328, 1.3 mmol, 0.14 g), triethylamine (1.61 mmol, 0.225 mL), 2-chloro-1-methylpyridinium iodide (0.63 mmol, 0.16 g) and stirred overnight at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1-1.5% methanol/chloroform) to afford 208 mg of white solid with 94% purity by LCMS. This was further purified using RP-HPLC (Atlantis C18 column (19×250 mm, 10 μm); using a binary solvent mixture of 20 mM NH4OAc (A)/MeOH (B) (0-20 min: 10-65% B, 20-30 min: 65% B and 30-45 min: 65-100% B; 45-50 min: 100% B flow rate of 15 mL/min; Separation was monitored at 210, 254 and 300 nm) to give 110 mg of the title compound.
5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}-N-(ethylsulfonyl)-2-methoxy- pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 646, 0.3 mmol, 0.150 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg) in CH2Cl2 were added ethanesulfonamide (Intermediate 328, 0.75 mmol, 0.082 g), triethylamine (0.9 mmol, 0.125 mL), 2-chloro-1-methylpyridinium iodide (0.36 mmol, 0.095 g) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH/CHCl3) to afford 130 mg of the title compound.
5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}-N-(ethylsulfoinyl)-2-methoxy- pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 648, 0.52 mmol, 0.250 g) and 4-(Dimethylamino)pyridine (0.61 mmol, 0.075 g) in CH2Cl2 (25 mL) were added propane-1-sulfonamide (Intermediate 328, 1.3 mmol, 0.16 g), triethylamine (1.61 mmol, 0.225 mL), 2-chloro-1-methylpyridinium iodide (0.63 mmol, 0.16 g) and stirred overnight at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 230-400 mesh silica (product eluted with 40-45% ethyl acetate/hexanes) to afford 200 mg of white solid with 81% purity by LCMS. This was further purified using RP-HPLC (Atlantis C18 column (19×250 mm, 10 μm); using a binary solvent mixture of 20 mM NH4OAc (A)/MeOH (B) (0-20 min: 10-65% B, 20-30 min: 65% B and 30-45 min: 65-100% B; 45-50 min: 100% B flow rate of 15 mL/min; Separation was monitored at 210, 254 and 300 nm) to give 125 mg of Example 824.
5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl] pyrimidin-5-yl}-2-methoxy-N-(propylsulfonyl)pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 646, 0.3 mmol, 0.150 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg) in CH2Cl2 were added propane-1-sulfonamide (Intermediate 329, 0.75 mmol, 0.092 g), triethylamine (0.9 mmol, 0.125 mL, 92 mg), 2-chloro-1-methylpyridinium iodide (0.37 mmol, 0.095 g) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH/CHCl3) to afford 90 mg of the title compound.
5-{2-[(3,5-dimethylphenyl)-amino]-4-[5-methyl-3-(trifluoro-nl methyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxy-N-(propylsulfonyl)- pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 648, 0.412 mmol, 0.200 g) and 4-(Dimethylamino)pyridine (0.082 mmol, 0.010 g) in CH2Cl2 (25 mL) were added propane-2-sulfonamide (Intermediate 330, 0.99 mmol, 0.122 g), triethylamine (1.236 mmol, 0.173 mL), 2-chloro-1-methylpyridinium iodide (0.49 mmol, 0.126 g) and stirred overnight at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1.5-2.5% MeOH in CHCl3) to afford 110 mg of white solid with 86% purity by LCMS. This was further purified using RP-HPLC (kromasil C18 column (50×250 mm, 10 μm); using a binary solvent mixture of 0.1% TFA in water (A)/MeOH (B) (0-20 min: 10-70% B, 20-30 min: 70-80% B and 30-40 min: 80-90% B; 40-50 min: 90% B, 50-55 min: 90-100% B flow rate of 40 mL/min; Separation was monitored at 210 and 290 nm) to give 40 mg of Example 826.
5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-12-yl] pyrimidin-5-yl}-2-methoxy-N-(propan-2-ylsulfonyl)pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 646, 0.3 mmol, 0.150 g) in CH2Cl2 (10 mL), were added propane-2-sulfonamide (Intermediate 330, 0.45 mmol, 0.055 g), triethylamine (0.9 mmol, 0.125 mL, 92 mg), 2-chloro-1-methylpyridinium iodide (0.37 mmol, 0.095 g) and 4-(Dimethylamino)pyridine (0.06 mmol, 7 mg), and refluxed at 45° C. for 30′. The reaction mixture was cooled, diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1% MeOH/CHCl3) to afford 95 mg of the title compound.
5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxy-N-(propan-2-ylsulfonyl)pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 648, 0.52 mmol, 0.250 g) and 4-(Dimethylamino)pyridine (0.104 mmol, 0.013 g) in CH2Cl2 (25 mL) were added 3-(morpholin-4-yl)propane-1-sulfonamide (Intermediate 332, 1.25 mmol, 0.26 g), triethylamine (1.61 mmol, 0.225 mL), 2-chloro-1-methylpyridinium iodide (0.63 mmol, 0.16 g) and stirred overnight at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 5-7% methanol/chloroform) to afford 170 mg of Example 828.
5-{2-[(3,5-dimethylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl] pyrimidin-5-yl}-2-methoxy-N-{[3-(morpholin-4-yl)propyl]sulfonyl}-pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 646, 0.4 mmol, 0.2 g) and 4-(Dimethylamino)pyridine (0.08 mmol, 9 mg) in CH2Cl2 were added 3-(morpholin-4-yl)propane-1-sulfonamide (Intermediate 332, 0.8 mmol, 0.17 g), triethylamine (1.2 mmol, 0.16 mL, 121 mg), 2-chloro-1-methylpyridinium iodide (0.48 mmol, 0.122 g) and stirred at RT for 3-4 h. The reaction mixture was diluted with dichloromethane and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 4% MeOH/CHCl3) to afford 120 mg of the title compound.
5-{2-[(3,5-dimethylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl] pyrimidin-5-yl}-2-methoxy-N-{[3-(morpholin-4-yl)propyl]sulfonyl}-pyridine-3- carboxamide
A solution of 5-bromo-N-(3,5-dimethoxyphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-yl]pyrimidin-2-amine (Intermediate 216, 0.96 mmol, 440 mg), (1,1-dioxido-3-oxo-2,3-dihydro-1,2-benzothiazol-5-yl)boronic acid (Intermediate 335, 1.32 mmol, 300 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.19 mmol, 158 mg) and sodium carbonate (0.96 mmol, 103 mg) in acetonitrile (5 mL)/water (1 mL) was degassed and heated to 90° C. for 20 min under nitrogen. Solvent was removed in vacuo and the residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 10% methanol/chloroform to yield 157 mg of the title compound.
5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl 56 -1,2-benzothiazol-3(2H)-one 1,1-dioxide
A solution of 5-bromo-N-(3,5-dimethoxyphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 215, 0.97 mmol, 430 mg), (1,1-dioxido-3-oxo-2,3-dihydro-1,2-benzothiazol-5-yl)boronic acid (Intermediate 335, 1.32 mmol, 300 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.19 mmol, 160 mg) and sodium carbonate (0.97 mmol, 103 mg) in acetonitrile (5 mL)/water (1 mL) was degassed and heated to 90° C. for 20 min under nitrogen. Solvent was removed in vacuo and the residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 9% methanol/chloroform to yield 190 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-1,2- benzothiazol-3(2H)- one 1,1-dioxide
A solution of 5-bromo-N-(3,5-dimethylphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 218, 0.97 mmol, 413 mg), (1,1-dioxido-3-oxo-2,3-dihydro-1,2-benzothiazol-5-yl)boronic acid (Intermediate 335, 1.32 mmol, 300 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.19 mmol, 158 mg) and sodium carbonate (0.97 mmol, 103 mg) in acetonitrile (5 mL)/water (1 mL) was degassed and heated to 90° C. for 20 min under nitrogen. Solvent was removed in vacuo and the residue was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 10% methanol/chloroform to yield 195 mg of the title compound.
5-{2-[(3,5- dimethylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-1,2- benzothiazol-3(2H)- one 1,1-dioxide
A solution of 5-bromo-N-(3,5-dimethylphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 217, 0.97 mmol, 399 mg), (1,1-dioxido-3-oxo-2,3-dihydro-1,2-benzothiazol-5-yl)boronic acid (Intermediate 335, 1.32 mmol, 300 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with CH2Cl2 (0.19 mmol, 158 mg) and sodium carbonate (0.97 mmol, 103 mg) in acetonitrile (5 mL)/water (1 mL) was degassed and heated to 90° C. for 20 min under nitrogen. Solvent was removed in vacuo and the residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 9% methanol/chloroform to yield 200 mg of the title compound.
5-{2-[(3,5- dimethylphenyl)amino]- 4-[3-(trifluoromethyl)- 1H-pyrazol-1- yl]pyrimidin-5-yl}-1,2- benzothiazol-3(2H)- one 1,1-dioxide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.19 mmol, 0.100 g) and N-(4-methyl-5-sulfamoyl-1,3-thiazol-2-yl)acetamide (Intermediate 336, 0.38 mmol, 0.089 g) in CH2Cl2 (25 mL), were added triethylamine (0.57 mmol, 0.08 mL), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 58 mg) and 4-(Dimethylamino)pyridine (0.038 mmol, 5 mg) and stirred for 4-5 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 4-5% methanol/chloroform) to afford 110 mg of white solid with 89% purity by LCMS. This was further purified using RP-HPLC (Kromasil C18 column (50×250 mm, 10 μm); using a binary solvent mixture of 0.1% TFA in water(A)/MeOH (B) (0-20 min: 10-70% B, 20-30 min: 70-80% B and 30-40 min: 80% B; 40-45 min: 80-100% B, 45-50 min: 100% B, 50-52 min: 100-10 B, flow rate of 40 mL/min; Separation was monitored at 210 and 300 nm) to give 55 mg of the title compound.
N-{[2-(acetylamino)-4- methyl-1,3-thiazol-5- yl]sulfonyl}-5-{2- [(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.19 mmol, 0.100 g) and 2,2,2-trifluoroethanesulfonamide (Intermediate 337, 0.43 mmol, 0.07 g) in CH2Cl2 (25 mL), were added triethylamine (0.94 mmol, 0.14 mL), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 60 mg) and 4-(Dimethylamino)pyridine (0.08 mmol, 10 mg) and stirred for 1 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 2% methanol/chloroform) to afford 45 mg of the title compound as a white solid.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxy-N-[(2,2,2- trifluoroethyl)sulfonyl] pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.28 mmol, 0.15 g) and 3,5-dimethyl-1,2-oxazole-4-sulfonamide (Intermediate 338, 0.42 mmol, 74 mg) in CH2Cl2 (10 mL), were added triethylamine (0.84 mmol, 0.12 mL), 2-chloro-1-methylpyridinium iodide (0.3 mmol, 78 mg) and 4-(Dimethylamino)pyridine (0.05 mmol, 6 mg) and stirred for 2 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 2% methanol/chloroform) to afford 85 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- [(3,5-dimethyl-1,2- oxazol-4-yl)sulfonyl]- 2-methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.37 mmol, 0.200 g) in CH2Cl2 (10 mL), were added 2,4-dimethyl-1,3-thiazole-5-sulfonamide (Intermediate 339, 0.56 mmol, 0.11 g), triethylamine (0.84 mmol, 0.12 mL), 2-chloro-1-methylpyridinium iodide (0.44 mmol, 0.11 g) and 4-(Dimethylamino)pyridine (0.05 mmol, 6 mg) and stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane and further washed with 10% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. This was further purified using RP-HPLC (Kromasil C18 column (250×50 mm, 10 μm); using a binary solvent mixture of 10 mM NH4OAc (A)/MeOH (B) (0-20 min: 20-70% B, 20-30 min: 70-80% B and 30-35 min: 80-100% B; 35-40 min: 100% B flow rate of 40 mL/min; Separation was monitored at 210, 254 and 300 nm) to afford 100 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- [(2,4-dimethyl-1,3- thiazol-5-yl)sulfonyl]- 2-methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.23 mmol, 0.125 g) and 1-(methylsulfonyl)methanesulfonamide (Intermediate 340, 0.34 mmol, 0.06 g) in CH2Cl2 (10 mL), were added triethylamine (0.6 mmol, 0.1 mL), 2-chloro-1-methylpyridinium iodide (0.27 mmol, 0.07 g) and 4-(Dimethylamino)pyridine (0.04 mmol, 5 mg) and stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane and further washed with 10% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 2% MeOH in CHCl3) to afford 70 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxy-N- {[(methylsulfonyl) methyl]sulfonyl} pyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.28 mmol, 0.15 g) and 1-methyl-1H-imidazole-4-sulfonamide (Intermediate 341, 0.84 mmol, 0.14 g) in CH2Cl2 (10 mL), were added triethylamine (1.69 mmol, 0.23 mL), 2-chloro-1-methylpyridinium iodide (0.35 mmol, 0.09 g) and 4-(Dimethylamino)pyridine (0.056 mmol, 7 mg) and stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane and further washed with 5% citric acid solution, water and brine. The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 2% MeOH in CHCl3) to afford 150 mg of the title compound.
5-{2-[(3,5- dimethoxyphenyl)- amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxy-N-[(1-methyl- 1H-imidazol-4- yl)sulfonyl]pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.56 mmol, 0.3 g) and 2,5-dihydrothiophene-3-sulfonamide 1,1-dioxide (Intermediate 343, 0.85 mmol, 0.17 g) in DMSO (10 mL), were added triethylamine (1.68 mmol, 0.23 mL), 2-chloro-1-methylpyridinium iodide (0.7 mmol, 0.18 g) and 4-(Dimethylamino)pyridine (0.11 mmol, 14 mg) and stirred at RT for 1 h. The reaction mixture was diluted with water and extracted into ethyl acetate. The organic layer was further washed with 10% citric acid solution, water and brine, dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 2% MeOH in CHCl3) to afford 200 mg of the title compound as a 7:3 mixture of two isomers.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-N- [(1,1-dioxido-2,5- dihydrothiophen-3- yl)sulfonyl]-2- methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.28 mmol, 0.15 g) and 6-methyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-sulfonamide (Intermediate 345, 0.42 mmol, 0.09 g) in DMSO (6 mL), were added triethylamine (1.4 mmol, 0.2 mL), 2-chloro-1-methylpyridinium iodide (0.42 mmol, 0.11 g) and 4-(Dimethylamino)pyridine (0.08 mmol, 10 mg) and stirred at RT for 1 h. The reaction mixture was diluted with water and extracted into ethyl acetate. The organic layer was further washed with 10% citric acid solution, water and brine, dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by 60-120 mesh silica (product eluted with 2% MeOH in CHCl3) to afford 70 mg of the title compound.
1H NMR/ SM
{2[(3,5- dimethoxyphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5- yl}-2-methoxy-N-[(6- methyl-2,4-dioxo-1,2,3,4- tetrahydropyrimidin-5- yl)sulfonyl]pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.31 mmol, 0.165 g) and 1,3,5-trimethyl-1H-pyrazole-4-sulfonamide (Intermediate 346, 0.78 mmol, 0.147 g) in CH2Cl2 (15 mL), were added triethylamine (0.933 mmol, 0.1302 mL), 2-chloro-1-methylpyridinium iodide (0.38 mmol, 99 mg) and 4-(Dimethylamino)pyridine (0.062 mmol, 8 mg) and stirred at RT for 90 min. The reaction mixture was diluted with dichloromethane (30 mL) and further washed with 25% citric acid solution (2×25 mL), water (50 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1-2% MeOH in CHCl3) to afford 60 mg of the title compound as a white solid.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxy-N-[(1,3,5- 4-yl)sulfonyl]pyridine- 3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.38 mmol, 0.2 g) and 3-methyl-2-oxo-2,3-dihydro-1,3-benzoxazole-6-sulfonamide (Intermediate 347, 0.46 mmol, 0.1 g) in CH2Cl2 (25 mL) were added triethylamine (1.14 mmol, 0.16 mL), 2-chloro-1-methylpyridinium iodide (0.46 mmol, 0.116 g) and 4-(Dimethylamino)pyridine (0.076 mmol, 10 mg) and stirred for 90 min at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1-1.5% methanol/chloroform) to afford 200 mg of white solid Example 843.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxy-N-[(3-methyl- 2-oxo-2,3-dihydro-1,3- benzoxazol-6- yl)sulfonyl]pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.19 mmol, 0.100 g) and 3-acetylbenzenesulfonamide (Intermediate 348, 0.37 mmol, 75 mg) in CH2Cl2 (10 mL), were added triethylamine (0.57 mmol, 0.08 mL), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 60 mg) and 4-(Dimethylamino)pyridine (0.03 mmol, 5 mg) and stirred for 1 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated in vacuo. The crude mass was purified by 60-120 mesh silica (product eluted with 1.5% methanol/chloroform) to afford 60 mg of the title compound as a white solid.
N-[(3- acetylphenyl)sulfonyl]- 5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.19 mmol, 0.100 g) and 1-methyl-3-(trifluoromethyl)-1H-pyrazole-4-sulfonamide (Intermediate 349, 0.38 mmol, 0.087 g) in CH2Cl2 (25 mL), were added 2-chloro-1-methylpyridinium iodide (0.23 mmol, 58 mg), triethylamine (0.57 mmol, 0.08 mL) and 4-(Dimethylamino)pyridine (0.038 mmol, 5 mg) and stirred for 4-5 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 4-5% methanol/chloroform) to afford 110 mg of white solid in 78% purity by LCMS. This was further purified using RP-HPLC (Kromasil C18 column (50×250 mm, 10 μm); using a binary solvent mixture of 0.1% TFA in water(A)/MeOH (B) (0-20 min: 10-70% B, 20-30 min: 70-80% B and 30-40 min: 80% B; 40-45 min: 80-100% B, 45-50 min: 100% B, 50-52 min: 100-10 B, flow rate of 40 mL/min; Separation was monitored at 210 and 300 nm) to give 63 mg of Example 845.
5-{2-[(3,5- dimethoxyphenyl) amino]-4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- methoxy-N-{[1- methyl-3- (trifluoromethyl)-1H- pyrazol-4- yl]sulfonyl}pyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.19 mmol, 0.100 g) and N-(4-sulfamoylbenzyl)acetamide (Intermediate 351 0.23 mmol, 52 mg) in CH2Cl2 (25 mL) were added triethylamine (0.57 mmol, 0.08 mL), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 58 mg) and 4-(Dimethylamino)pyridine (0.038 mmol, 5 mg) and stirred for 4-5 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by RP-HPLC (Kromasil C18 column (50×250 mm, 10 μm); using a binary solvent mixture of 0.1% HCOOH in water(A)/MeOH (B) (0-20 min: 20-70% B, 20-30 min: 70-80% B and 30-45 min: 80-100% B; 45-55 min: 100% B, 55-57 min: 100-20% B, flow rate of 40 mL/min; Separation was monitored at 210, 280 and 320 nm) to give 62 mg of Example 846.
N-({4-[(acetylamino)methyl]phenyl}sulfonyl)-5-{2-[(3,5- dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.19 mmol, 0.100 g) and 1,3-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-sulfonamide (Intermediate 352 0.23 mmol, 48 mg) in CH2Cl2 (25 mL) were added triethylamine (0.57 mmol, 0.08 mL), 2-chloro-1-methylpyridinium iodide (0.23 mmol, 58 mg) and 4-(Dimethylamino)pyridine (0.038 mmol, 5 mg) and stirred 4-5 h at RT. The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by RP-HPLC (Kromasil C18 column (50×250 mm, 10 μm); using a binary solvent mixture of 0.1% HCOOH in water(A)/MeOH (B) (0-20 min: 20-70% B, 20-30 min: 70-80% B and 30-45 min: 80-100% B; 45-55 min: 100% B, 55-57 min: 100-20% B, flow rate of 40 mL/min; Separation was monitored at 210, 280 and 320 nm) to give 55 mg of Example 847.
5-{2-[(34,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N- [(1,3-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidin-5- yl)sulfonyl]-2-methoxypyridine-3-carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.36 mmol, 0.19 g) and 2-(2,5-dioxopyrrolidin-1-yl)ethanesulfonamide (Intermediate 353, 0.9 mmol, 0.19 g) in DMSO (10 mL), were added triethylamine (1.07 mmol, 0.15 mL), 2-chloro-1-methylpyridinium iodide (0.45 mmol, 0.12 g) and 4-(Dimethylamino)pyridine (0.07 mmol, 10 mg) and stirred at RT for 1 h. The reaction mixture was diluted with water and extracted into ethyl acetate. The organic layer was further washed with 10% citric acid solution, water and brine, dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 2% MeOH in CHCl3) followed by washing with water and 1.5 N HCl to afford 58 mg of the title compound (0.08 mmol, 22%).
55-{2-[(3,5-dimethoxyphenyl)-amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N-{[2-(2,5- dioxopyrrolidin-1-yl)ethyl]sulfonyl}-2-methoxypyridine-3- carboxamide
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-methoxypyridine-3-carboxylic acid (Example 675, 0.38 mmol, 0.2 g) and 1H-pyrazole-4-sulfonamide (Intermediate 354, 0.45 mmol, 0.07 g) in CH2Cl2 (25 mL) were added triethylamine (1.14 mmol, 0.16 mL), 2-chloro-1-methylpyridinium iodide (0.46 mmol, 0.116 g) and 4-(Dimethylamino)pyridine (0.076 mmol, 10 mg) and stirred for 4-5 h at RT.
The reaction mixture was diluted with dichloromethane (50 mL) and further washed with 25% citric acid solution (2×50 mL), water (100 mL) and brine (75 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 5-6% methanol/chloroform) to afford 36 mg of white solid Example 849.
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- methoxy-N-(1H-pyrazol-4-ylsulfonyl)pyridine-3- carboxamide
A suspension of 5-bromo-N-(3,5-dimethoxyphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 215, 0.45 mmol, 0.2 g), a mixture of methyl 2-(methylsulfanyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate and [5-(methoxycarbonyl)-6-(methylsulfanyl)pyridin-3-yl]boronic acid (Intermediate 359, 0.58 mmol based on the boronic ester, 0.180 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with dichloromethane (0.04 mmol, 0.0367 g) and sodium carbonate (0.45 mmol, 0.0477 g) in acetonitrile/water (5:1) was degassed and heated to 90° C. for 30 min under an inert atmosphere. The reaction mass was passed through a celite bed and solvent was concentrated in vacuo. The resultant residue taken in
EtOAc (50 mL) was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude mass was further purified by silica gel column chromatography (product eluted with 3% Et3N EtOAc) to yield 0.22 g of the product.
methyl 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- (methylsulfanyl)pyrimidine-3-carboxylate
To 160 mg of methyl 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-(methylsulfanyl)pyridine-3-carboxylate (Example 850, 0.29 mmol) taken in a mixture of THF (5 mL) and water (5 mL), was added Sodium hydroxide (0.73 mmol, 0.029 g) and stirred at room temperature for 3 h. The mixture was carefully acidified with 1 N HCl and the solid obtained was filtered, dried to yield the desired product (0.13 g).
5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- (methylsulfanyl)pyrimidine- 3-carboxylic acid
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-(methylsulfanyl)pyridine-3-carboxylic acid (Example 851, 0.187 mmol, 0.1 g) in DCM was added TEA (0.56 mmol, 0.057 g), 2-chloro-1-methylpyridinium iodide (0.225 mmol, 0.0575 g), DMAP (0.037 mmol, 5 mg) and methanesulfonamide (0.28 mmol, 0.0268 g) stirred at RT for 2 h. The reaction mixture was diluted with DCM (20 mL), washed with water, 10% citric acid and brine, dried over Na2SO4, filtered and concentrated. The crude material was stirred with MeOH and hexane to give the pure title compound (0.1 g).
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- (methylsulfanyl)-N-(methylsulfonyl)pyridine-3-carboxamide
A suspension of 5-bromo-N-(3,5-dimethoxyphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 216, 0.43 mmol, 0.2 g), a mixture of methyl 2-(methylsulfanyl)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine-3-carboxylate and [5-(methoxycarbonyl)-6-(methylsulfanyl)pyridin-3-yl]boronic acid (Intermediate 359, 0.56 mmol, 0.175 g), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) complex with dichloromethane (0.04 mmol, 0.036 g) and sodium carbonate (0.43 mmol, 0.0462 g) in acetonitrile/water (5:1) was degassed and heated to 90° C. for 30 min under an inert atmosphere. The reaction mass was passed through a diatomaceous earth bed and the solvent was concentrated in vacuo. The resultant residue taken in EtOAc (50 mL) was washed with water, brine, dried over Na2SO4, filtered and concentrated. The crude mass was further purified by silica gel column chromatography with (25% EtOAc/hexanes) to yield 0.180 g of the product.
Methyl 5-{2-[(3,5-dimethoxyphenyl)-amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- (methylsulfanyl)pyridine-3-carboxylate
To 50 mg of methyl 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-(methylsulfanyl)pyridine-3-carboxylate (Example 853, 0.089 mmol) taken in a mixture of THF (5 mL) and water (5 mL), was added sodium hydroxide (0.22 mmol, 9 mg) and stirred at room temperature for 3 h. The mixture was carefully acidified with 1 N HCl and the solid obtained was filtered and then dried to yield the product (0.04 g).
5-{2-[(3,5-Dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- (methylsulfanyl)pyridine-3-carboxylic acid
To a solution of 5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-(methylsulfanyl)pyridine-3-carboxylic acid (Example 854, 0.219 mmol, 0.12 g) in DCM was added TEA (0.65 mmol, 0.066 g), 2-chloro-1-methylpyridinium iodide (0.263 mmol, 0.0673 g) (0.225 mmol, 0.0575 g), DMAP (0.0439 mmol, 6 mg) and Methanesulfonamide (0.329 mmol, 0.0313 g), and stirred at RT for 2 h. The reaction mixture was diluted with DCM (20 mL), washed with water, 10% citric acid and brine, dried over Na2SO4, filtered and concentrated. The crude mass was further purified by silica gel column chromatography with (2% MeOH/EtOAc). The material obtained from chromatography was stirred with DCM and hexane to yield 0.1 g of the pure product (100 mg).
5-{2-[(3,5-dimethoxyphenyl)amino]-4-[5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2- (methylsulfanyl)-N-(methylsulfonyl)pyridine-3-carboxamide
To a solution of 2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 760, 0.33 mmol, 165 mg) in CH2Cl2 (10 mL), were added methanesulfonamide (0.82 mmol, 78 mg), triethylamine (0.99 mmol, 0.14 mL), 2-chloro-1-methylpyridinium iodide (0.41 mmol, 105 mg) and 4-(Dimethylamino)pyridine (0.066 mmol, 8 mg) and stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane (20 mL) and further washed with 25% citric acid solution (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 60-120 mesh silica (product eluted with 1-2% MeOH in CHCl3) to afford 65 mg of the title compound as a white solid.
2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-N- (methylsulfonyl)pyridine-3-carboxamide
To a solution of 2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carboxylic acid (Example 761, 0.36 mmol, 185 mg) in CH2Cl2 (10 mL), was added methanesulfonamide (0.90 mmol, 86 mg), triethylamine (1.08 mmol, 0.15 mL), 2-chloro-1-methylpyridinium iodide (0.45 mmol, 115 mg) and 4-(Dimethylamino)pyridine (0.072 mmol, 8.78 mg) and stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane (20 mL) and further washed with 25% citric acid solution (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by 230-400 mesh silica (product eluted with 1-2% MeOH in CHCl3) to afford 130 mg of white solid of the title compound.
2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-N-(methylsulfonyl)pyridine-3-carboxamide
A solution of 5-bromo-N-(3-methoxy-5-methylphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 293, 0.93 mmol, 400 mg), a mixture of methyl 1-methyl-2-oxo-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1,2-dihydropyridine-3-carboxylate and [5-(methoxycarbonyl)-1-methyl-6-oxo-1,6-dihydropyridin-3-yl]boronic acid (Intermediate 323, 1.1 mmol based on the boronic ester, 328 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (0.18 mmol, 146 mg) and sodium carbonate (0.9 mmol, 95 mg) in acetonitrile (40 mL)/water (10 mL) was degassed and heated to 90° C. for 30 minutes under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 2% methanol/chloroform to obtain 300 mg of the title compound.
methyl 5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-1- methyl-2-oxo-1,2-dihydropyridine-3-carboxylate
To 300 mg of methyl 5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylate (Example 858, 0.58 mmol) taken in a mixture of THF (10 mL)/H2O (10 mL), was added NaOH (1.1 mmol, 46 mg) and stirred at rt for 2 h. The solvent was removed in vacuo and the mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered and dried to obtain 190 mg of the title compound.
5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3- (trifluoromethyl)- 1H-pyrazol-1-yl]pyrimidin-5-yl}-1-methyl- 2-oxo-1,2-dihydropyridine-3-carboxylic acid
A solution 5-bromo-N-(3-methoxy-5-methylphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 294, 0.79 mmol, 350 mg), a mixture of methyl 1-methyl-2-oxo-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1,2-dihydropyridine-3-carboxylate (methoxycarbonyl)-1-methyl-6-oxo-1,6-dihydropyridin-3-yl]boronic acid (Intermediate 323, 0.95 mmol based on the boronic ester, 279 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (0.14 mmol, 112 mg) and sodium carbonate (0.7 mmol, 74 mg) in acetonitrile (40 mL)/water (10 mL) was degassed and heated to 90° C. for 30 minutes under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 2% methanol/chloroform to afford 300 mg of the title compound.
Methyl 5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl]pyrimidin-5-yl}-1-methyl-2-oxo-1,2-dihydropyridine-3- carboxylate
To 300 mg of methyl 5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylate (Example 860, 0.57 mmol) dissolved in a mixture of THF (10 mL)/H2O (10 mL), then NaOH (1.1 mmol, 46 mg) was added and the mixture was stirred at rt for 2 h. The solvent was removed in vacuo and the mixture was carefully acidified with 1 N HCl and the solid that precipitated was filtered and dried to obtain 200 mg of the title compound.
5-{2-[(3-methoxy-5- methylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-1- methoxy-2-oxo-1,2- dihydropyridine-3- carboxylic acid
A solution 5-bromo-N-(3-methoxy-5-methylphenyl)-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 294, 0.9 mmol, 400 mg), a mixture of ethyl 1-ethyl-2-oxo-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1,2-dihydropyridine-3-carboxylate and [5-(ethoxycarbonyl)-1-ethyl-6-oxo-1,6-dihydropyridin-3-yl]boronic acid (Intermediate 361, 1.1 mmol based on the boronic ester, 350 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II) (0.2 mmol, 146 mg) and sodium carbonate (0.9 mmol, 95 mg) in acetonitrile (40 mL)/water (10 mL) was degassed and heated to 90° C. for 30 minutes under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 2% methanol/chloroform to yield 300 mg of the title compound.
ethyl 1-ethyl-5-{2-[(3- methoxy-5- methylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- oxo-1,2- dihydropyridine-3- carboxylate
To 300 mg of ethyl 1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-oxo-1,2-dihydropyridine-3-carboxylate (Example 862, 0.54 mmol) taken in a mixture of THF (10 mL)/H2O (10 mL), was added NaOH (1.1 mmol, 43 mg) and stirred at rt for 2 h. The solvent was removed in vacuo and the mixture was then carefully acidified with 1 N HCl and the solid that precipitate was filtered and dried to obtain 180 mg of the title compound.
1-ethyl-5-{2-[(3- methoxy-5- methylphenyl)amino]- 4-[5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl]pyrimidin-5-yl}-2- oxo-1,2- dihydropyridine-3- carboxylic acid
The compounds in the below table were prepared using the general method described above for Example 1 using Intermediate 113 and the specified starting material.
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(1,3- dimethoxypropan- 2- yloxy)nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (pyridin-4- yl)ethoxy)- nicotinate
The compounds in the below table were prepared using the general method described above for Example 1 using Intermediate 115 and the specified starting material.
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(1,3- dimethoxypropan- 2- yloxy)nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenylamino)- 4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (pyridin-4- yl)ethoxy)- nicotinate
The compound in the below table was prepared using the general method described above for Example 1 using Intermediate 216 and the specified starting material.
5-(2-(3,5- dimethoxy- phenylamino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- methoxy- nicotinitrile
The compounds in the below table were prepared using the general method described above for Example 214 using 1N sodium hydroxide (2 equivalents), dioxane:THF (1:1) as solvent and the specified starting material.
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(1,3- dimethoxypropan- 2- yloxy)nicotinic acid
5-(2-(3-chloro- 4- fluorophenylamino)- 4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(1,3- dimethoxypropan- 2- yloxy)nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl) 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (pyridin-4- yl)ethoxy)- nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (pyridin-4- yl)ethoxy)- nicotinic acid
5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxynicotinonitrile (Example 868, 0.16 g, 0.31 mmol), dibutyltin oxide (0.023 g, 0.09 mmol), and TMS-N3 (0.166 mL, 1.25 mmol) were suspended in 1,4-dioxane (1 mL) to give a yellow suspension. The mixture was heated in a microwave reactor at 140° C. for 1 h. Concentrated in vacuo. Purified by flash chromatography: 25 g silica gel column, 0-20% methanol in chloroform. Relevant fractions pooled and resulting material was dried under high vacuum to obtain the title compound as a tan foam in (0.1 g).
MS(ES): 555.17 (M+H) for C24H21F3N10O3
1H-NMR (400 MHz, DMSO-d6): δ ppm 2.39 (m, 3H) 3.73 (m., 6H) 4.04 (m, 3H) 6.22 (m, 1H) 6.75 (m., 1H) 7.06 (m, 2H) 8.03 (m, 1H) 8.18 (m., 1H) 8.96 (m, 1H) 10.22 (m, 1H).
5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)nicotinic acid (Example 320, 57 mg, 0.12 mmol) and 1,1-carbonyldiimidazole (50 mg) were combined in DMF (1.5 mL) and stirred for 30 minutes. Methanesulfonamide (16.99 mg, 0.18 mmol) was added and the mixture was stirred at 90° C. overnight. Purification by reverse phase chromatography (05-95% ACN/water NH4OH) gave the title compound (14 mg).
MS (Electrospray): 556.89, (MH+) for C21H14ClF4N7O3S
1H NMR (300 MHz, DMSO-d6) δ: 2.84 (s, 3H) 7.00 (d, J=2.64 Hz, 1H) 7.42 (t, J=9.14 Hz, 1H) 7.74 (ddd, J=9.09, 4.19, 2.73 Hz, 1H) 8.00-8.13 (m, 2H) 8.28 (d, J=2.07 Hz, 1H) 8.45 (s, 1H) 8.78 (s, 1H) 8.95(d, J=1.70 Hz, 1H) 10.43 (s, 1H)
3-Cyclopropyl-1H-pyrazole (42.7 mg, 0.40 mmol) was dissolved in THF, then NaH (9.48 mg, 0.40 mmol) was added slowly and the mixture was stirred for 30 minutes. The mixture was added to a solution of (E)-ethyl 3-(3-(2-(3-chloro-4-fluorophenylamino)-4-(methylsulfonyl)pyrimidin-5-yl)phenyl)acrylate Intermediate 125 (94 mg, 0.20 mmol) in THF (2 mL). The resulting mixture was allowed to stir overnight at room temperature. Methanol (0.25 ml) then water (0.25 ml) were added and the mixture was evaporated. Purification using reverse phase chromatography (C18, 20 to 95% CH3CN/H2O/0.1% Trifluoroacetic acid) yielded the title compound. (17 mg).
MS (Electrospray): 476.90(MH+) for C25H19ClFN5O2
1H NMR (300 MHz, DMSO-d6) δ: 0.18-0.47 (m, 2H) 0.57-0.76 (m, 2H) 1.52-1.80 (m, 1H) 6.35 (d,J=2.64 Hz, 1H) 6.46 (s, 1H) 6.52 (s, 1H) 7.19 (d, J=7.54 Hz, 1H) 7.32-7.46 (m, 2H) 7.48-7.59 (m, 1H)7.62 (d, J=8.10 Hz, 1H) 7.72 (ddd, J=9.09, 4.19, 2.73 Hz, 1H) 8.06-8.21 (m, 2H) 8.58 (s, 1H) 10.16 (s, 1H)
5-bromo-N-(3-chloro-4-fluorophenyl)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine Intermediate 115 (100 mg, 0.23 mmol), Pd(Ph3P)4 (79 mg, 0.07 mmol), and 0.5M (6-methoxypyridin-2-yl)zinc(II) bromide in THF (0.916 mL, 0.46 mmol) were combined in THF (6 mL) under argon. The reaction was heated at 65° C. for 45 minutes. Additional 0.5M (6-methoxypyridin-2-yl)zinc(II) bromide in THF (0.916 mL, 0.46 mmol) was added and the mixture was allowed to stir for an additional 1.5 hours. The reaction mixture was concentrated and purified by silica gel flash chromatography using 0-50% ethyl acetate in hexanes. The title compound was obtained as a solid. (7 mg)
MS (Electrospray): 467.80(MH+) C20H13ClF4N6O
1H NMR (300 MHz, DMSO-d6) ppm 3.55 (s, 3H) 6.59-6.83 (m, 1H) 6.93-7.14 (m, 2H) 7.27-7.52 (m, 2H) 7.63-7.82 (m, 1H) 8.07-8.21 (m, 1H) 8.37-8.52 (m, 1H) 8.99 (s, 1H) 10.32-10.54 (m, 1H)
2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-ylboronic acid Intermediate 364 (80 mg, 0.20 mmol), methyl 6-bromopicolinate (34.4 mg, 0.16 mmol), Pd(Ph3P)4 (46.0 mg, 0.04 mmol), and K2CO3 (41.3 mg, 0.30 mmol) were combined with Dioxane (4 mL) and water (1 mL). The mixture was heated in a microwave for 45 min. at 120° C. Reverse phase chromatography (C18, 20-95% CH3CN/H2O/0.1% Trifluoroacetic acid) of the crude mixture gave the title compound. (19 mg)
MS (Electrospray): 479.79 (MH+) C20H11ClF4N6O2
1H NMR (300 MHz, DMSO-d6) δ ppm 7.04 (d, J=2.64 Hz, 1H) 7.42 (d, J=7.91 Hz, 2H) 7.70-7.83 (m, 1H) 7.88-8.03 (m, 2H) 8.06-8.15 (m, 1H) 8.97 (s, 1H) 10.50 (s, 1H) 12.67-13.30 (m, 1H)
3-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)benzoic acid Example (45 mg, 0,09 mmol) was dissolved in DMF (3 ml). Triethylamine (0.033 ml, 0.24 mmol) and HATU (35 mg, 0.09 mmol) was added and the mixture was allowed to stir for 10 min. N-methylmethanesulfonamide (10 mg, 0.09 mmol) was added to the reaction mixture and it was allowed to stir at RT overnight. Purification using reverse phase chromatography (C18, 5-95% CH3CN/H2O/0.1% Trifluoroacetic acid) yielded the title compound. (12 mg).
MS (Electrospray): 569.93 (MH+) C23H17ClF4N6O3S
1H NMR (300 MHz, DMSO-d6) δ ppm 3.25-3.35 (s, 3H), 3.55 (s, 3H) 6.59-6.77 (m, 1H) 6.92-7.11 (m, 2H) 7.22-7.55 (m, 2H) 7.65-7.85 (m, 2H) 8.01-8.22 (m, 1H) 8.34-8.53 (m, 1H) 8.99 (s, 1H) 10.40-10.54 (m, 1H)
2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-ylboronic acid Intermediate 364 (100 mg, 0.25 mmol), methyl 2-chloro-6-methylpyrimidine-4-carboxylate (93 mg, 0.50 mmol), Pd(Ph3P)4 (57.6 mg, 0.05 mmol), and K2CO3 (51.6 mg, 0.37 mmol) were combined with Dioxane (2 mL) and water (0.500 mL). The mixture was heated in a microwave for 45 min at 120° C. The mixture was purified using reverse phase chromatography (C18, 5-95%. CH3CN/H2O/0.1% Trifluoroacetic acid) to yield the title compound. (28 mg).
MS (Electrospray): 494.80 (MH+) C20H12C1F4N7O2
1H NMR (300 MHz, DMSO-d6) δ ppm 2.46 (s, 3H) 6.95-7.10 (m, 1H) 7.38-7.49 (m, 1H) 7.73-7.80 (m,1H) 7.81 (s, 1H) 8.05-8.13 (m, 1H) 8.52-8.65 (m, 1H) 9.10 (s, 1H) 10.54-10.66 (m, 1H) 13.49-13.84 (m, 1H)
The compounds in the following table were prepared using the procedure for Example 1 with the specified starting materials.
(E)-3-(3-(2-(3-methoxy-5- (trifluoromethyl)phenylamino)- 4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)phenyl)acrylic acid
1-(5-(2-(3-methoxy-5- (trifluoromethyl)phenylamino)- 4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)pyridin-3-yl)-2- (methylsulfonyl)ethanone
N-(3-methoxy-5- (trifluoromethyl)phenyl)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)-5,5′-bipyrimidin-2- amine
5-(2-(3-methoxy-5- (trifluoromethyl)phenylamino)- 4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)thiophene-2-carboxylic acid
N-(3-methoxy-5- (trifluoromethyl)phenyl)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)-5-(pyridin-3- yl)pyrimidin-2-amine
2′-methoxy-N-(3-methoxy-5- (trifluoromethyl)phenyl)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)-5,5′-bipyrimidin-2- amine
(E)-3-(3-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)phenyl)aceylic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)thiophene-2- carboxylic acid
ethyl 5-(2-(3-methoxy-5- (trifluoromethyl)phenylamino)- 4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)nicotinate
4-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)picolinonitrile
N-(2-chloro-4-fluorophenyl)-5- (1H-pyrrolo[2,3-b]pyridin-5-yl)- 4-(3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-2-amine
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)furan-2- carboxylic acid
3-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)benzoic acid
methyl 5-(2-(3-fluoro-5- methoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2- methoxynicotinate
ethyl 5-(2-(3-fluoro-5- methoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)nicotinate
mthyl 5-(2-(3-chloro-5- cyanophenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2- methoxynicotinate
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2-methoxy-N- (methylsulfonyl)nicotinamide
5-(2-(3,5-dimethylphenylamino)- 4-(3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2- methoxy-N- (methylsulfonyl)nicotinamide
5-(2-(3,5-dimethylphenylamino)- 4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)- 2-methoxy-N- (methylsulfonyl)nicotinamide
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2- methoxy-N- (methylsulfonyl)nicotinamide
5-(2-(3,5- dimethoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2-methoxy-N- (methylsulfonyl)nicotinamide
2-methoxy-5-(2-(3-methoxy-5- (trifluoromethyl)phenylamino)- 4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)- N-(methylsulfonyl)nicotinamide
methyl 5-(2-(3,5- dimethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-1- methyl-2-oxo-1,2- dihydropyridine-3-carboxylate
ethyl 5-(2-(3,5- dimethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-1- ethyl-2-oxo-1,2-dihydropyridine- 3-carboxylate
methyl 5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-1-methyl-2- oxo-1,2-dihydropyridine-3- carboxylate
methyl 5-(2-(3-fluoro-5- ethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-1- methyl-2-oxo-1,2- dihydropyridine-3-carboxylate
methyl 5-(2-(3,5- dimethylphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-1-methyl-2- oxo-1,2-dihydropyridine-3- carboxylate
methyl 5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-oyrazol-1- yl)pyrimidin-5-yl)-2- methoxynicotinate
5-(2-(3,5- dimethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2- methoxy-N- (methylsulfonyl)nicotinamide
The following example was prepared using the general method described above for Example 212 and the specified starting materials.
(Z)-2-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)-5- (ethoxy(hydroxy)methylene)- thiazol-4(5H)-one
The compounds in the below table were prepared using the same procedure as Example 214, using the starting material and base specified.
(E)-3-(3-(2-(4-chloro-2- methoxy-5-methyl- phenylamino)-4-(3- (dimethylamino)propyl amino)pyrimidin-5- yl)phenyl)acrylic acid
2-(2-(3-chloro-4-fluoro- phenylamino)-4-(3- methoxypropylamino) pyrimidin-5-yl)thiazol-4- carboxylic acid
5-(2-(3-methoxy-5- (trifluoromethyl)phenylamino)- 4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)nicotinic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromthyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)nicotinic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-2-methoxynicotinic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-5- cyanophenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-2- methoxynicotinic acid
5-(2-(3,5- dimethoxyphenylamino)-4- (5-methyl-3- (trifluoromnethyl)-1H-pyrazol- 1-yl)poyrimidin-5-yl)-1- methyl-2-oxo-1,2- dihydropyridine-3-carboxylic acid
5-(2-(3,5- dimethoxyphenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-1-ethyl- 2-oxo-1,2-dihydropyridine-3- carboxylic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-1- methyl-2-oxo-1,2- dihydropyridine-3-carboxylic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-2-oxo-1,2- dihydropyridine-3-carboxylic acid
5-(2-(3,5- dimethylphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-1- methyl-2-oxo-1,2- dihydropyridine-3-carboxylic acid
5-(2-(3-fluoro-5- methoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-2- methoxynicotinic acid
The compounds in the table below were prepared using the same procedure as Example 360 with the specified starting materials.
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2- (methylsulfonamido)ethyl)- nictinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2- (methylsulfonyl)ethyl)- nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2- hydroxyethyl)nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2-(4-methylpiperazin- 1-yl)ethyl)nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2-(3-methyl-1,2,4- oxadiazol-5- yl)ethyl)nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2-(methylamino)-2- oxoethyl)nicotinamide
(5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)pyridin-3- yl)(morpholino)methanone
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2-morpholinoethyl) nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-methoxynicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(2- methoxyethyl)nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5- yl)-N-(1,3-dimethoxypropan- 2-yl)nicotinamide
N-(2,3-dihydroxypropyl)-5- (2-(3-methoxy-5- (trifluoromethyl)phenyl- amino)-4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)nicotinamide
Intermediate 127 (100 mg, 0.30 mmol), sodium azide (77 mg, 1.2 mmol), and ammonium chloride (64 mg, 1.2 mmol) were combined in N,N-dimethylformamide (2 mL) and heated at 100 degrees C. for 3 hours. The reaction mixture was allowed to cool, then it was filtered. Reverse-phase chromatography (C18: water, acetonitrile, formic acid additive) was used to isolate the desired product (59 mg).
MS: ES+ 379 for C15H16ClFN8O.
1H NMR (300 MHz, DMSO-d6) δ ppm 1.90 (quin, J=6.45 Hz, 2H) 3.25 (s, 3H) 3.46 (t, J=6.03 Hz, 2H) 3.64 (q, J=6.53 Hz, 2H) 7.34 (t, J=9.14 Hz, 1H) 7.58-7.73 (m, 1H), 8.20 (dd, J=6.78, 2.45 Hz, 1H) 8.48 (t, J=4.80 Hz, 1H) 8.63 (s, 1H) 9.88 (s, 1H).
The compound in the table below was made using the method above for Example 937 with the specified starting material.
5-(5-(1H-tetrazol-5- yl)pyridin-3-yl)-N2-(3- chloro-4-fluorophenyl)-N4- (3- (dimethylamino)propyl)- pyrimidin-2,4-diamine
The compounds in the below table were prepared using the general method described above for Example 1 and the starting materials (SM) indicated.
(E)-ethyl 3-(3- (2-(3-chloro-4- fluorophenyl- amino)-4- (tetrahydrofuran- 3- ylamino)- pyrimidin-5- yl)phenyl)- acrylate
N2-(3-chloro-4- fluorophenyl)- 2′-methoxy-N4- (tetrahydrofuran- 3-yl)-5,5′- bipyrimidine- 2,4-diamine
(S)-N2-(3- chloro-4- fluorophenyl)- 2′-methoxy-N4- (tetrahydrofuran- 3-yl)-5,5′- bipyrimidine- 2,4-diamine
(S, E)-3-(3-(2- (3-chloro-4- fluorophenyl- amino)-4- (tetrahydrofuran- 3-ylamino)- pyrimidin-5- yl)phenyl)- acrylic acid
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- isopropoxy- nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- isopropoxy- nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-((1- methyl-1H- imidazol-2- yl)methoxy)- nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2-(4- methylpiperazin- 1- yl)ethoxy)- nicotinate
ethyl 5-(2-(3- choloro-4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2-(4- methylpiperazin- 1- yl)ethoxy)- nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(3- (tyrifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinate
ethyl 5-(2-(3,5- dimethylphenyl amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinate
ethyl 5-(2-(3,5- dimethoxyphenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinate
ethyl 5-(2-(3- chloro-4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinate
ethyl 2-(2- acetamidoethoxy)- 5-(2-(3,5- dimethoxy- phenylamino- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)nicotinate
ethyl 5-(2-(3,5- dimethoxyphenyl- amino-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(3- (methylsulfonyl)- propoxy)- nicotinate
ethyl 5-(2-(3,5- dimethoxyphenyl- amino-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(3- (methylsulfonyl)- propoxy)- nicotinate
The compounds in the below table were prepared using the general method described above for
Example 214 using 1N sodium hydroxide and the starting material (SM) indicated.
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinic acid
2-(2- acetamidoethoxy)- 5-(2-(3,5- dimthoxyphenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)nicotinic acid
(E)-2-(3-(2-(3- chloro-4- fluorophenyl- amino)-4- (tetrahydrofuran- 3- ylamino)- pyrimidin-5- yl)phenyl)- acrylic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- isopropoxy- nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- isopropoxy- nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-((1- methyl-1H- imidazol-2- yl)methoxy)- nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2-(4- methylpiperazin- 1- yl)ethoxy)- nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2-(4- methylpiperazin- 1- yl)ethoxy)- nicotinic acid
5-(2-(3,5- dimethylphenyl amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- sulfonyl)- nicotinic acid
5-(2-(3,5- dimethoxy- phenylamino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinic acid
5-(2-(3-chloro- 4- fluorophenyl- amino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(2- (methylsulfonyl)- ethoxy)- nicotinic acid
5-(2-(3,5- dimethoxy- phenylamino)-4-(5- methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(3- (methylsulfonyl)- propoxy)- nicotinic acid
5-(2-(3,5- dimethoxy- phenylamino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2-(3- (mehtylsulfonyl)- propoxy)- nicotinic acid
The compounds in the below table were prepared using the general method described above for Example 824 and the starting material (SM) indicated.
2-(2- acetamidoethoxy)-5- (2-(3,5- dimethoxyphenyl- amino)-4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl)pyrimidin-5-yl)-N- (methylsulfonyl)- nicotinamide
5-(2-(3,5- dimethoxyphenyl- amino)-4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1- yl)pyrimidin-5-yl)-N- (methylsulfonyl)-2- (3- (methylsulfonyl)- propoxy) nicotinamide
(2-(3,5- dimethoxyphenyl- amino)-4-(3- (trifluoromethyl)-1H- pyrazol-1- yl)pyrimidin-5-yl)-N- (methylsulfonyl)-2- (3- (methylsulfonyl)- propoxy)nicotinamide
5-(2-(3,5- dimethoxyphenyl- amino)-4-(3- (trifluoromethyl)-1H- pyrazol-1- yl)pyrimidin-5-yl)-2- (3- (methylsulfonyl)- propoxy)-N- (trifluoromethyl- sulfonyl)nicotinamide
5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxynicotinonitrile Example 868 (0.10 g, 0.20 mmol), and hydroxylamine (0.018 ml, 0.30 mmol) were suspended in ethanol (4.6 mL) to give a white suspension. The mixture was heated at 80° C. for 2 hours then concentrated in vacuo. The residue was triturated with acetonitrile and dried under high vacuum to obtain the title compound as an off-white solid (0.095 g).
MS(ES): 545.2 (M+H) for C24H23F3N8O4
1H-NMR (400 MHz, DMSO-d6): δ ppm 2.27 (s, 3H) 3.72 (s, 7 H) 3.87 (s, 3H), 5.69 (s, 2H) 6.21 (s, 1H) 6.73 (s, 1H) 7.04 (d, J=1.88 Hz, 2H) 7.57 (d, J=2.26 Hz, 1H) 7.81 (d, J=2.45 Hz, 1H) 8.88 (s, 1H) 9.58 (s, 1H)10.19 (s, 1H)
(E)-5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-N'-hydroxy-2-methoxynicotinimidamide Example 973 (0.20 g, 0.37 mmol), di(1H-imidazol-1-yl)methanethione (0.099 g, 0.55 mmol) and DBU (0.222 ml, 1.47 mmol) were suspended in acetonitrile (8.16 mL). The mixture was stirred at room temperature for 1.5 hours then concentrated in vacuo. The residue was purified by flash chromatography: 4 g silica column, 3-30% methanol in chloroform over 25 min. The relevant fractions were pooled and resulting material was dried and purified by reverse phase HPLC: 65-95% methanol in 0.1% formic acid-water (pH 3) using a 19mm×100 mm 5 μm waters T3 C18 column. Evaporation of fractions gave the title compound as an off-white solid (0.05 g).
MS(ES): 587.2 (M+H) for C25H21F3N8O4S
1H-NMR (300 MHz, DMSO-d6): δ ppm 2.37 (s, 3H) 3.72 (s, 7 H) 3.95 (s, 3H) 6.22 (t, J=2.07 Hz, 1H) 6.77 (s, 1H) 7.05 (d, J=2.07 Hz, 2H) 7.82 (d, J=2.45 Hz, 1H) 8.09 (d, J=1.88 Hz, 1H) 8.93 (s, 1H) 10.22 (s, 1H)
(E)-5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-N′-hydroxy-2-methoxynicotinimidamide Example 973 (0.0951 g, 0.17 mmol), CDI (0.042 g, 0.26 mmol) and DBU (0.053 ml, 0.35 mmol) were suspended in 1,4-dioxane (3.5 mL). The mixture was stirred at room temperature overnight then concentrated in vacuo. The residue was purified by reverse phase flash chromatography: 50 g C18 column, 5-75% acetonitrile in water over 25 min. Relevant fractions pooled and evaporated to give the title compound as a white solid (0.029g).
MS(ES): 571.2 (M+H) for C25H21F3N8O5
1H-NMR (300 MHz, DMSO-d6): δ ppm 2.38 (s, 4H) 3.72 (s, 6 H) 3.95 (s, 3H) 6.22 (br, s., 1H) 6.77 (s, 1H) 7.04 (s, 2H) 7.72 (s, 1H) 8.15 (s, 1H) 8.93 (s, 1H) 10.22 (s, 1H)
The following compounds were prepared using the general method described for Example 1 using tris(dibenzyledeneacetone)-dipalladium(0), 2-dicyclohexyl phosphino-2′,4′,6′-triiso-propyl-1,1′-biphenyl, sodium carbonate and the starting materials (SM) indicated.
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(4- (methylsulfonyl)piperazin- 1-yl)pyrimidin-5- yl)nicotinate
(E)-ethyl 3-(3-(2-(3-chloro- 4-fluorophenylamino)-4- (2- (hydroxymethyl)morpholino)- pyrimidin-5- yl)phenyl)acrylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(2- (hydroxymethyl)morpholino)- pyrimidin-5-yl)nicotinate
(E)-ethyl 3-(3-(2-(3-chloro- 4-fluorophenylamino)-4- (5-ethyl-2- methylmorpholino)- pyrimidin-5-yl)- phenyl)acrylate
Ethyl 6-(2-(3-chloro-4- fluorophenylamino)-4-(3- (dimethylamino)propyl- amino)pyrimidin-5-yl)-1-(2- methoxyethyl)-4-oxo-1,4- dihydroquinoline-3- carboxylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- ethyl-2- methylmorpholino)- pyrimidin-5-yl)nicotinate
5-(4-(4-Acetylpiperazin-1- yl)-2-(3-chloro-4- fluorophenylamino)- pyrimidin-5-yl)thiophene-2- carboxylic acid
1-tert-butyl 2-methyl-6-(2- (3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)-1H-indole-1,2- dicarboxylate
1-tert-butyl 2-ethyl 5-(2-(3- chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)-1H-indole-1,2- dicarboxylate
1-tert-butyl 2-methyl-6-(2- (3-choloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)-1H-indole-1,2- dicarboxylate
1-tert-butyl 2-ethyl 5-(2-(3- chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)-1H-indole-1,2- dicarboxylate
N2-(3-chloro-4- fluorophenyl)-N4-(3- methoxypropyl)-5-(5- (methylsulfonyl)pyridin-3- yl)pyrimidine-2,4-diamine
N-(3-chloro-4- fluorophenyl)-5-(5- (methylsulfonyl)pyridin-3- yl)-4- morpholinopyrimidin-22- amine
N-(3-chloro-4- fluorophenyl)-4-(5-methyl- 3-(trifluoromethyl)-1H- pyrazol-1-yl)-5-(5- (methylsulfonyl)pyridin-3- yl)pyrimidin-2-amine
N-(3-chloro-4- fluorophenyl)-5-(5- (methylsulfonyl)pyridin-3- yl)-4-(3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-2-amine
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-methoxynicinate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- methoxynicotinate
1-(5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)pyridin-3-yl)-2- (methylsulfonyl)ethanone
Ethyl 6-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-(4- methylpiperazin-1- yl)ethyl)-4-oxo-1,4- dihydroquinoline-3- carboxylate
3-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N- ethylbenzenesulfonamide
Ethyl 2-(3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)phenylamino)-2- oxoacetate
3-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N-(2- hydroxyethyl)benzene- sulfonamide
3-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N- (ethylcarbamoyl)benzene- sulfonamide
Methyl 2-amino-5-(2-(3- chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)nicotinate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N-ethylpyridine-3- sulfonamide
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-methoxybenzoate
3-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N- (methylsulfonyl)benzamide
tert-Butyl 2-(3-(2-(3- chloro-4- fluorophenylamino)-4-(3- (trifluorophenylamino)-1H- pyrazol-1-yl)pyrimidin-5- yl)phenylsulfonyl)acetate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-morpholinoethyl)- 2-oxo-1,2-dihydropyridine- 3-carboxylate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1-(2- morpholinoethyl)-2-oxo- 1,2-dihydropyridine-3- carboxylate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-(2- morpholinoethylamino)- nicotinate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2-(2- morpholinoethylamino)- nicotinate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- methoxynicotinate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)isoindole-1,3-dione
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-methoxynicotinate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-(2- methoxyethylamino)- nicotinate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2-(2- methoxyethylamino)- nicotinate
Ethy 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-methoxyethyl)-2- oxo-1,2-dihydropyridine-3- carboxylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1-(2- methoxyethyl)-2-oxo-1,2- dihydropyridine-3- carboxylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoroethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-hydroxyethyl)-2- oxo-1,2-dihydropyridine-3- carboxylate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N-(ethylsulfonyl)-2- methoxynicotinamide
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-N- (ethylsulfonyl)-2- methoxynicotinamide
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1-(2-(4- isopropylpiperazin-1- yl)ethyl)-2-oxo-1,2- dihydropyridine-3- carboxylate
5-(2-(3,5- Dimethoxyphenylamino)- 4-(3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-N- (methylsulfonyl)-2-oxo- 1,2-dihydropyridine-3- carboxamide
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsufonyl)ethyl)-2- oxo-1,2-dihydropyridine-3- carboxylate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine-3- carboxylate
Methyl 5-(2-(3,5- dimethoxyphenylamino)-4- (3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine-3- carboxylate
Methyl 5-(2-(3,5- dimethoxyphenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine-3- carboxylate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-methoxy-N- (methylsulfonyl)- nicotinamide
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-2- methoxy-N- (methylsulfonyl)- nicotinamide
5-(2-(3,5- Dimethoxyphenylamino)- 4-(5-methoxy-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-N- (methylsulfonyl)-2-oxo- 1,2-dihydropyridine-3- carboxamide
Methyl 5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxynicotinate (Example 1010, 0.788 g mg, 1.51 mmol) was dissolved in THF(10 mL) to give a yellow solution. The reaction mixture was cooled to −40° C. 1M DIBAL-H in toluene (9 mL, 9 mmol) was slowly added to the reaction mixture. The reaction was allowed to warm up to room temperature overnight. The reaction was diluted with EtOAc and washed with 1M NH4Cl. Purification by flash chromatography, silica gel, 40-100% ethyl acetate in hexanes gave a crude solid. Trituration with hexane/ether and filtration gave the title compound (103 mg).
MS (Electrospray): 495.83, (MH+) for C21H15ClF4N6O2
1H NMR (300 MHz, DMSO-d6) δ: 3.88 (s, 3H) 5.15 (s, 2H) 7.00 (d, J=2.45 Hz, 1H) 7.20-7.47 (m, 2H) 7.59-7.83 (m, 1H) 7.90 (d, J=2.26 Hz, 1H) 7.99-8.23 (m, 1H) 8.38 (d, J=1.51 Hz, 1H) 8.76 (s, 1H), 10.39 (s, 1H)
(5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxypyridin-3-yl)methanol (243 mg, 0.49 mmol) Example 1027 and manganese dioxide (427 mg, 4.91 mmol) were combined in dichloromethane to give a black suspension. The reaction mixture was allowed to stir at room temperature for 6 hours. Additional manganese dioxide (427 mg, 4.91 mmol) was added and the mixture was allowed to stir for 48 hours. The mixture was filtered through celite and washed with methanol and dichloromethane. The filtrate was concentrated to yield the title compound (145 mg). MS (Electrospray): 493.81 (MH+) for C21H13ClF4N6O2
Methyl 2-(diethoxyphosphoryl)acetate (68.0 mg, 0.32 mmol) and NaH (17.65 mg, 0.44 mmol) were combined in THF (2 ml) to give a colorless solution. The reaction mixture was allowed to stir for 5 minutes then added to a solution of 5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxynicotinaldehyde (145 mg, 0.29 mmol) Example 1028 in THF (2 ml). The mixture was allowed to stir at RT for 45 min, water and ethyl acetate were added. The organic layer was then dried with MgSO4 and concentrated. The solid was purified by flash chromatography over silica gel. The product was eluted using 30% ethyl acetate in hexanes to give the title compound (114 mg). MS (Electrospray): 548.88 (MH+) for C24H17ClF4N6O3
(E)-methyl 3-(5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-pyrazol-1yl)pyrimidin-5-yl)-2-methoxypyridin-3-yl)acrylate Example 1029 (114 mg, 0.21 mmol) was dissolved in Dioxane (5 mL) to give a yellow solution. 1M NaOH (0.312 mL, 0.31 mmol) was added at room temp and then allowed to stir overnight. The reaction mixture was acidified with 1M HCl then extracted with ethyl acetate. The ethyl acetate was evaporated and the solid purified using reverse phase chromatography (C18, 20 to 95%.CH3CN/H2O/0.1% Trifluoroacetic acid) to yield the title compound (28 mg).
MS (Electrospray): 535 (MH+) for C23H15ClF4N6O3
1H NMR (300 MHz, DMSO-d6) δ: 3.92-4.02 (m, 3H) 6.49 (d, J=16.01 Hz, 1H) 7.04 (d, J=2.64 Hz, 1H) 7.42 (t, J=9.14 Hz, 1H) 7.64 (d, J=16.20 Hz, 2H) 7.68-7.77 (m, 1H) 7.91 (d, J=2.26 Hz, 1H) 8.00-8.20(m, 2H) 8.48 (s, 1H) 8.82 (s, 1H) 10.40 (s, 1H) 12.45 (br. s., 1H)
The following examples were prepared using the general method described for Example 158 using [1,1′-bis (diphenylphosphino)ferrocene]dichloropalladium(II), sodium carbonate and the starting materials (SM) indicated.
Methyl 4-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)- pyrimidin-5-yl)picolinate
Methyl4-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)picolinate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-N,N-diethylpyridine-3- sulfonamide
4-(2-(4-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-N,N- diethylpyridine-3- sulfonamide
N-(3-chloro-4- fluorophenyl)-5-(5- (morpholinosulfonyl)pyrimidin-3-yl)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-2- amine
N-(3-chloro-4- fluorophenyl)-4-(5-methyl- 3-(trifluoromethyl)-1H- pyrazol-1-yl)-5-(5- (morpholinosulfonyl)pyrimidin-3-yl)pyrimidin- 2-amine
Ethyl 6-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-morpholinoethyl)- 4-oxo-1,4- dihydroquinoline-3- carboxylate
Ethyl 6-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (dimethylamino)ethyl)-4- oxo-1,4-dihydroquinoline- 3-carboxylate
Methyl 3-(5-(2-(3-chloro- 4-fluorophenylamino)-4- morpholinopyrimidin-5- yl)pyridin-3-yl)-3- oxopropanoate
Methyl 3-(5-(2-(3-chloro- 4-fluorophenylamino)-4- (3- methoxypropylamino)pyrimidin-5-yl)pyridin-3-yl)-3- oxopropanoate
Methyl 3-(5-(2-(3-chloro- 4-fluorophenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)pyridin-3-yl)-3- oxopropanoate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)isoindoline-1,3-dione
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1-(2- hydroxyethyl)-2-oxo-1,2- dihydropyridine-3- carboxylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-ethyl-2-oxo-1,2- dihydropyridine-3- carboxylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1-ethyl- 2-oxo-1,2-dihydropyridine- 3-carboxylate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-2-oxo-1,2- dihydropyridine-3- carboxylate
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1- methyl-2-oxo-1,2- dihydropyridine-3- carboxylate
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-N- (methylsulfonyl)-2-oxo- 1,2-dihydropyridine-3- carboxamide
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3-(trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5-yl)-1- methyl-N- (methylsulfonyl)-2-oxo- 1,2-dihydropyridine-3- carboxamide
Methyl 5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-(4- isopropylpiperazin-1- yl)ethyl)-2-oxo-1,2- dihydropyridine-3- carboxylate
1-tert-butyl 2-methyl 6-(2-(3-chloro-4-fluorophenylamino)-4-(3-methoxypropylamino)pyrimidin-5-yl)-1H-indole-1,2-dicarboxylate (Example 983, 104 mg, 0.18 mmol) was suspended in DCM (4 mL). The solution was then treated with trifluoroacetic acid (0.274 ml, 3.56 mmol) and stirred at room temperature for 1 hr. The solvent was removed at reduced pressure and the residue was washed with Et2O/hexanes to afford methyl 6-(2-(3-chloro-4-fluorophenylamino)-4-(3-methoxypropylamino)pyrimidin-5-yl)-1H-indole-2-carboxylate in 98% yield (84 mg).
MS(ES): 484 (M+1) for C24H23ClFN5O3.
1H NMR (300 MHz, DMSO-D6) δ ppm 1.60-1.93 (m, 2H) 3.13 (s, 3H) 3.23-3.55 (m, 4H) 3.89 (s, 3H) 7.06 (dd, J=8.29, 1.32 Hz, 1H) 7.23 (d, J=0.94 Hz, 1H) 7.31-7.31-7.65 (m, 3H) 7.80 (dd, J=4.90, 3.39 Hz, 2H) 7.89-8.06 (m, 1H) 8.10 (s, 1H) 10.34 (s, 1H) 12.16 (s, 1H).
The following examples were prepared using the general method described above for Example 1051 using the starting material (SM) indicated.
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- (3- methoxyproylamino)pyrimidin-5-yl)-1H- indole-2-carboxylate
Methyl 6-(2-(3-chloro- 4-fluorophenylamino)- 4- morpholinopyrimidin- 5-yl)-1H-indole-2- carboxylate
Ethyl 5-(2-(3-chloro-4- fluorophenylamino)-4- morpholinopyrimidin- 5-yl)-1H-indole-2- carboxylate
The following examples were prepared using the general method described for Example 214 using 1N sodium hydroxide, THF/MeOH, and the starting material (SM) indicated.
5-(2-(3-chloro-4- fluorophenylamino)-4-(4- (methylsulfonyl)piperazin- 1-yl)pyrimidin-5- yl)nicotinic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(5- ethyl-2- methylmorpholino)pyrimidin-5-yl)phenyl)acrylic acid
6-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (dimethylamino)propyl- amino)pyrimidin-5-yl)-1-(2- methoxyethyl)-4-oxo-1,4- dihydroquinoline-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- ethyl-2- methylmorpholino)pyrimidin- 5-yl)nicotinic acid
(E)-3-(3-(2-(3-chloro-4- fluorophenylamino)-4-(2- (hydroxyethyl)morpholino)pyrimidin-5- yl)phenyl)acrylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(2- hydroxymethyl)morpholin)pyrimidin-5-yl)nicotinic acid
6-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)pyrimidin-5-yl)-1H-indole- 2-carboxylic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)pyrimidin-5-yl)-1H-indole- 2-carboxylic acid
6-(2-(3-Chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)-1H-indole-2-carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4- morpholinopyrimidin-5- yl)-1H-indole-2-carboxylic acid
4-(2-(3-Chloro-4- fluorophenylamino)-4-(3- methoxypropylamino)pyrimidin-5-yl)nicotinic acid
Methyl-ester Hydrolysis: The following examples were prepared using the general method described for Example 214 using 1N sodium hydroxide, THF : 1,4-dioxane (1:1), and the starting material (SM) indicated.
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-methoxynicotinic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2-methoxynicotinic acid
4-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)picolinic acid
6-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-morpholinoethyl)- 4-oxo-1,4- dihydroquinoline-3- carboxylic acid
6-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (dimethylamino)ethyl)-4- oxo-1,4-dihydroquinoline- 3-carboxylic acid
6-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-(4- methylpiperazin-1- yl)ethyl)-4-oxo-1,4- dihydroquinoline-3- carboxylic acid
2-(3-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)phenylamino)-2- oxoacetic acid
2-Amino-5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)nicotinic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-methoxybenzoic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-morpholinoethyl)- 2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-morpholinoethyl)- 2-oxo-1,2- dihydrpyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromthyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-(2- morpholinoethylamino)nicotinic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2-(2- morpholinoethylamino)nicotinic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2-(2- methoxyethylamino)nicotinic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2-(2- methoxyethylamino)nicotinic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-1-(2- methoxyethyl)-2-oxo- 1,2-dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-methoxyethyl)-2- oxo-1,2-dihydropyridine- 3-carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-hydroxyethyl)-2- oxo-1,2-dihydropyridine- 3-carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-1-(2-hydroxyethyl)- 2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-ethyl-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-1-ethyl-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-methyl-2-oxo-1,2- dihydrpyridine-3- carboxylic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-(4- isopropylpiperazin-1- yl)ethyl)-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2-(4- isopropylpiperazin-1- yl)ethyl)-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine- 3-carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine- 3-carboxylic acid
5-(2-(3-Chloro-4- fluorophenylamino)-4-(5- methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3,5- dimethoxyphenylamino)- 4-(3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine- 3-carboxylic acid
5-(2-(3,5- Dimethoxyphenylamino)- 4-(3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-oxo-1,2- dihydropyridine-3- carboxylic acid
5-(2-(3,5- Dimethoxyphenylamino)- 4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-1-(2- (methylsulfonyl)ethyl)-2- oxo-1,2-dihydropyridine- 3-carboxylic acid
5-(2-(3,5- Dimethoxyphenylamino)- 4-(5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)-2-oxo-1,2- dihydropyridine-3- carboxylic acid
tert-butyl 2-(3-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)phenylsulfonyl)acetate Example 1003 (164 mg, 0.27 mmol) was dissolved in THF (2 mL), cooled to 0° C., treated with trifluoroacetic acid (2 mL), and allowed to stir at room temperature for 2 days. The solvent was removed at reduced pressure and the residue was purified by reverse phase preparative HPLC (C18: 45-95% ACN in H2O containing 0.1% TFA) to afford the desired product (120 mg).
MS(ES): 556 (M+1) for C22H14ClF4N5O4S
1H NMR (300 MHz, DMSO-d6) δ ppm 4.42 (s, 2H) 7.00 (d, J=2.64 Hz, 1H) 7.41 (t, J=9.14 Hz, 1H) 7.47-7.57 (m, 1H) 7.63 (t, J=7.72 Hz, 1H) 7.68-7.81 (m, 2H) 7.87 (d, J=7.91 Hz, 1H) 8.11 (dd, J=6.69, 2.54 Hz, 1H) 8.42 (d, J=1.51 Hz, 1H) 8.82 (s, 1H) 10.45 (s, 1H)
The following examples were prepared using the general HATU coupling method described for Example 360 using the starting materials (SM) indicated.
5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2-methoxy-N- methylnicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-N,2- dimethoxynicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-N,2- dimethoxynicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2-methoxy-N- methylnicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2- methoxynicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2- methoxynicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4- (3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin- 5-yl)-2- methoxybenzamide
The following examples were prepared using the general method described above for Example 1 using Intermediate 436 and the starting material (SM) indicated
N′-butan-2-yl-N-(3- chloro-4- fluorophenyl)-5-(2- methoxypyrimidin- 5-yl)pyrimidine- 2,4-diamine
5-(1-benzofuran-2- yl)-N′-butan-2-yl- N-(3-chloro-4- fluorophenyl) pyrimidine-2,4-diamine
N′-butan-2-yl-N-(3- chloro-4- fluorophenyl)-5-[4- methoxy-3- (trifluoromethyl) phenyl]pyrimidine- 2,4-diamine
tert-butyl N-[5-[4- (butan-2-ylamino)- 2-[(3-chloro-4- fluorophenyl)amino] pyrimidin-5-yl]-2- chlorophenyl] carbamate
The following examples were prepared using the general method described above for Example 1 using the starting materials (SM) indicated.
5-[2-[(3-chloro-4- fluorophenyl)- amino]-4-imidazol-1- ylpyrimidin-5- yl]thiophene-2- carboxylic acid
ethyl (E)-3-[3-[2- [(3-chloro-4- fluorophenyl) amino]-4-pyrazol-1- ylpyrimidin-5- yl]phenyl]prop-2- enoate
N-(3-chloro-4- fluorophenyl)-4- imidazol-1-yl-5- pyrimidin-5- ylpyrimidin-2- amine
5-[2-[(3-chloro-4- fluorophenyl) amino]-4-[5-methyl- 3- (trifluoromethyl) pyrazol-1- yl]pyrimidin-5- yl]thiophene-2- carboxylic acid
(E)-3-(3-(2-(4- fluoro-3- (methylsulfonyl) phenylamino)-4-(3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)phenyl)acrylic acid
(E)-3-(3-(2-(3- cyano-5- fluorophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)phenyl)acrylic acid
ethyl 5-(2-(3- cyano-5- fluorophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)nicotinate
methyl 5-(2-(3- chloro-5- cyanophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- methoxynicotinate
ethyl 5-(2-(3- chloro-5- cyanophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)nicotinate
The following examples were prepared using the general method described for example 214 using 1N sodium hydroxide, 1,4-dioxane and the starting material (SM) indicated.
(E)-3-[3-[2-[(3- chloro-4- fluorophenyl) amino]-4-pyrazol-1- ylpyrimidin-5- yl]phenyl]prop-2- enoic acid
5-(2-(3-cyano-5- fluorophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)nicotinic acid
5-(2-(3-chloro-5- cyanophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)-2- methoxynicotinic acid
5-(2-(3-chloro-5- cyanophenylamino)- 4-(5-methyl-3- (trifluoromethyl)- 1H-pyrazol-1- yl)pyrimidin-5- yl)nicotinic acid
The following examples were prepared using the general HATU coupling method described for Example 360 using Example 320 and the starting material indicated.
5-[2-[(3-chloro-4- fluorophenyl) amino]-4-[3- (trifluoromethyl) pyrazol-1- yl]pyrimidin-5- yl]pyridine-3- carboxamide
5-[2-[(3-chloro-4- fluorophenyl) amino]-4-[3- (trifluoromethyl) pyrazol-1- yl]pyrimidin-5- yl]-N- ethylpyridine-3- carboxamide
5-bromo-4-(3-(difluoromethyl)-5-methyl-1H-pyrazol-1-yl)-N-(3,5-dimethoxyphenyl)pyrimidin-2-amine Intermediate 449 (210 mg, 0.48 mmol), ethyl 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)nicotinate (159 mg, 0.57 mmol), and PdCl2(dppf-CH2Cl2Adduct (117 mg, 0.14 mmol) were combined in acetonitrile (10 mL) to give a yellow suspension. Sodium carbonate (60.7 mg, 0.57 mmol) was added, followed by water (2.500 mL) and the mixture was degassed with argon then heated at 80° C. for 4 hours. Adsorption onto silica gel, followed by flash chromatography (0.5-10% methanol in dichloromethane) gave the intermediate ester compound (235 mg) which was hydrolyzed to the corresponding carboxylic acid without further characterization as follows: The ester was dissolved in Dioxane (5 ml), then 1N NaOH solution (0.690 ml, 0.69 mmol) was added and the mixture was allowed to stir at room temperature for 6 hours. The reaction mixture was neutralized with 1M HCl followed by purification by reverse phase chromatography (C18: 5-95% acetonitrile in water, 0.5% TFA) to give the title compound (89 mg). MS:ES+482.44 for C23H20F2N6O4
1H NMR (300 MHz, DMSO-d6) δ ppm 2.41 (s, 3H) 3.73 (s, 6 H) 6.10-6.37 (m, 1H) 6.55 (s, 2H) 7.06 (s, 2H) 7.75-7.99 (m, 1H) 8.39-8.65 (m, 1H) 8.93 (br. s., 2H) 10.05-10.34 (m, 1H) 13.25-13.64 (m, 1H)
The compounds in the below table were prepared using this procedure and the specified starting materials.
5-(4-(5-(difluoromethyl)-3- methyl-1H-pyrazol-1-yl)-2- (3,5- dimethoxyphenylamino) pyrimidin-5-yl)nicotinic acid
3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-4- methoxybenzoic acid
5-bromo-N-(3-chloro-4-fluorophenyl)-4-morpholinopyridin-2-amine Intermediate 454 (80 mg, 0.21 mmol), (E)-3-(3-boronophenyl)acrylic acid (55.6 mg, 0.29 mmol), and Pd2(dba)3 (18.95 mg, 0.02 mmol) were combined in acetonitrile (8 mL) to give a suspension. Dicyclohexyl(2′,4′, 6′-triisopropylbiphenyl-2-yl)phosphine (29.6 mg, 0.06 mmol) and Na2CO3 (43.9 mg, 0.41 mmol) were added followed by water (2.000 mL). The reaction was degassed with argon then heated at 80° C. for 30 minutes. Adsorption onto silica gel followed by purification by flash chromatography (3-25% methanol in dichloromethane) gave the title compound (52 mg). MS (Electrospray): 454.89 (MH+) for C24H21ClFN3O3
1H NMR (300 MHz, DMSO-d6) δ ppm 2.82 (br. s., 4H) 3.54 (br. s., 4H) 6.37 (s, 1H) 6.49-6.64 (m, 1H) 7.29 (s, 1H) 7.48 (d, J=7.35 Hz, 3H) 7.61 (s, 2H) 7.80-7.99 (m, 2H) 8.05-8.26 (m, 1H) 9.26 (s, 1H),12.22-12.74 (m, 1H)
5-bromo-N-(3-chloro-4-fluorophenyl)-4-(5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-2-amine Intermediate 113 (191 mg, 0.42 mmol), methyl 2-(2-methoxyethoxy)-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)nicotinate, Intermediate 465 (200 mg, 0.59 mmol), Pd2(dba)3 (38 mg, 0.04 mmol) and dicyclohexyl(2′,4′,6′-triisopropylbiphenyl-2-yl)phosphine (60 mg, 0.13 mmol) were combined in acetonitrile (10 mL) to give a yellow suspension. Sodium carbonate (67 mg, 0.64 mmol) was added, followed by water (2.500 mL) and the mixture was degassed using argon then heated at 80° C. for 4 hours. Purification by flash chromatography (0.5-10% methanol in dichloromethane) gave the intermediate carboxylic ester (265 mg), which was hydrolyzed to the corresponding carboxylic acid as below.
MS (Electrospray): 581.92 (MH+) for C25H21ClF4N6O4
The intermediate ester, methyl 5-(2-(3-chloro-4-fluorophenylamino)-4-(5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-2-(2-methoxyethoxy)nicotinate (265mg, 0.45 mmol), was dissolved in THF (1 ml) and Dioxane (3 ml). 1N NaOH (1.12 ml, 1.12 mmol) was added and the mixture was allowed to stir at room temperature overnight. The reaction mixture was neutralized with 1M HCl then evaporated. The residue was purified by reverse phase chromatography (C18: 35-95% acetonitrile in water, 0.1% TFA) to give the title compound (60 mg). MS (Electrospray): 567 (MH+) for C24H19ClF4N6O4
1H NMR (300 MHz, DMSO-d6) δ ppm 2.36 (s, 3H) 3.30 (s, 3H) 3.63-3.70 (m, 2H), 4.33-4.54 (m, 2H), 6.76 (s, 1H) 7.42 (t,J=9.14 Hz, 1H) 7.64 (d, J=2.45 Hz, 2H) 7.93-8.30 (m, 2H), 8.95 (s, 1H) 10.42 (s, 1H) 12.90 (s, 1H)
The Compounds in the below table were prepared using this procedure and the specified starting materials.
5-(2-(3-chloro-4-fluorophenylamino)-4- (5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2,6- dimethoxynicotinic acid
5-(2-(3-chloro-4-fluorophenylamino)-4- (3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2,6- dimethoxynicotinic acid
5-(2-(3-chloro-4-fluorophenylamino)-4- (3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2-(2- methoxyethoxy)nicotinic acid
5-(2-(3-chloro-4-fluorophenylamino)-4- (5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2-(2- hydroxyethoxy)nicotinic acid
5-(2-(3-chloro-4-fluorophenylamino)-4- (3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2-(2,2,2- trifluoroethoxy)nicotinic acid
5-(2-(3,5-dimethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-2-(2- morpholinoethoxy)nicotinic acid
2-(5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-1H-pyrazol-1- yl)acetic acid
3-(2-(3-chloro-4-fluorophenylamino)-4- (3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-4-methoxybenzoic acid
3-(2-(3-chloro-4-fluorophenylamino)-4- (3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2-methoxybenzoic acid
5-(2-(3-chloro-4-fluorophenylamino)-4- (3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-2-(2- morpholinoethoxy)nicotinic acid
5-(2-(3-chloro-4-fluorophenylamino)-4- (5-methyl-3-(trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)-2-(2- morpholinoethoxy)nicotinic acid
5-(2-(3,5-dimethylphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-6-methoxynicotinic acid
5-(4-(3-cyclopropyl-1H-pyrazol-1-yl)-2- (3,5-dimethoxyphenylamino)pyrimidin- 5-yl)-2-methoxynicotinic acid
5-(2-(3,5-dimethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H-1,2,4- triazol-1-yl)pyrimidin-5-yl)-2- methoxynicotinic acid
6-(2-(dimethylamino)ethoxy)-5-(2-(3,5- dimethylphenylamino)-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)nicotinic acid
The compounds in the below table were prepared using the procedure described for Example 1 and the specified starting materials.
3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)- N-(2- hydroxyethyl)benzamide
3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)benzamide
3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)- N,N-dimethylbenzamide
3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5-yl)- N-methoxy-N- methylbenzamide
3-acetamido-5-(2-(3-chloro- 4-fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)benzoic acid
(3-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)phenyl)(morpholino) methanone
5-(4-(3-cyclopropyl-1H- pyrazol-1-yl)-2-(3,5- dimethoxyphenylamino) pyrimidin-5-yl)-2-methoxy-N- (methylsulfonyl)nicotinamide
5-(2-(3,5- dimethoxyphenylamino)-4- (5-methyl-3- (trifluoromethyl)-1H-1,2,4- triazol-1-yl)pyrimidin-5-yl)- 2-methoxy-N- (methylsulfonyl)nicotinamide
5-(2-(3-chloro-4- fluorophenylamino)-4-(3- (trifluoromethyl)-1H- pyrazol-1-yl)pyrimidin-5- yl)nicotinaldehyde
Methyl 2-(diethoxyphosphoryl)acetate (0.102 mL, 0.51 mmol) was dissolved in THF (1 mL). NaH, 60% dispersion in oil, (30.7 mg, 0.77 mmol) was added and the suspension was stirred for 5 minutes to give a solution. The solution was then added to a mixture of 5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)nicotinaldehyde Example 1154 (227 mg, 0.51 mmol) in THF (3 ml). The reaction mixture was then heated at 50° C. for 1 hour. Water was added and the mixture was extracted with ethyl acetate. The organic layer was washed with brine, then dried with MgSO4, filtered and concentrated. The residue was triturated with diethyl ether to give a solid mass, which was collected and further rinsed with diethyl ether to give the title compound as an off white solid. (227 mg).
MS (Electrospray): 519 (MH+) for C23H15ClF4N6O2
(E)-methyl 3-(5-(2-(3-chloro-4-fluorophenylamino)-4-(3-(trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)pyridin-3-yl)acrylate Example 1155 (100 mg, 0.19 mmol) and 2M KOH (0.289 mL, 0.58 mmol) were combined in Dioxane (2 mL). The reaction mixture was allowed to stir at RT overnight, then neutralized with 1M HCl to pH 6. Water and 10% methanol in ethyl acetate were added and the layers were separated. The organic layer was dried with MgSO4 then concentrated down to a residue which was purified by reverse phase chromatography (C18: 15-95% acetonitrile in water with 0.1% TFA) to give the title compound (10 mg).
MS (Electrospray): 505.28 (MH+) for C22H13ClF4N6O2
1H NMR (300 MHz, DMSO-d6) δ ppm 6.61 (d, J=16.20 Hz, 1H) 7.06 (d, J=2.64 Hz, 1H) 7.43 (t, J=9.04 Hz,1H) 7.50-7.62 (m, 1H) 7.74 (ddd, J=7.35, 4.52, 4.14 Hz, 1H) 8.02 (s, 1H) 8.09 (dd, J=6.69, 2.54 Hz, 1H) 8.32 (d, J=1.88 Hz, 1H) 8.53 (s, 1H) 8.77 (d, J=1.70 Hz, 1H) 8.85 (s, 1H) 10.48 (s, 1H) 12.65 (br. s., 1H)
The compounds in the below table were prepared using the general method described above for Example 1 using the specified starting materials.
methyl 5-(2-(3,5-dimethoxyphenylamino)-4-(3- (trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5- yl)-1-(2-methoxyethyl)-2-oxo-1,2-dihydropyridine- 3-carboxylate
methyl 5-(2-(3,5-dimethoxyphenylamino)-4-(5- methyl-3-(trifluoromethyl)-1H-pyrazol-1- yl)pyrimidin-5-yl)-1(2-methoxyethyl)-2-oxo- 1,2-dihydropyridine-3-carboxylate
The compounds in the below table were prepared using the general method described above for
Example 214 using 1N sodium hydroxide (2 equivalents), dioxane : THF (1:1) as solvent and the specified starting material.
5-(2-3,5-dimethoxyphenylamino)-4-(3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)-1-(2-methoxyethyl)- 2-oxo-1,2-dihydropyridine-3-carboxylic acid
5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5- yl)-1-(2-methoxyethyl)-2-oxo-1,2- dihydropyridine-3-carboxylic acid
The compounds in the below table were prepared using the general method described above for
Example 800 using 2-chloro-1-methylpyridinium iodide, 4-(Dimethylamino)pyridine and triethylamine, with CH2Cl2 as solvent and the carboxylic acid and sulfonamide starting materials listed.
5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)-1- (2-methoxyethyl)-N-(methylsulfonyl)-2-oxo-1,2- dihydropyridine-3-carboxamide
5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin-5-yl)- N-(ethylsulfonyl)-1-(2-methoxyethyl)-2-oxo-1,2- dihydropyridiine-3-carboxamide
5-(2-(3,5-dimethoxyphenylamino)-4-(3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)-1-(2-methoxyethyl)-N- (methylsulfonyl)-2-oxo-1,2-dihydropyridine-3-carboxamide
5-(2-(3,5-dimethoxyphenylamino)-4-(5-methyl-3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)-1-(2-methoxyethyl)-N- (methylsulfonyl)-2-oxo-1,2-dihydropyridine-3-carboxamide
The compound in the below table was prepared using the general method described above for Example 858 using the specified starting materials.
methyl 5-(2-(3,5-dimethylphenylamino)-4- (5-methyl-3-(trifluoromethyl)-1H-pyrazol- 1-yl)pyrimidin-5-yl)-1-methyl-2-oxo- 1,2-dihydropyridine-3-carboxylate
The compound in the below table was prepared using the general method described above for Example 859 using the specified starting material.
5-(2-(3,5-dimethylphenylamino)-4-(5-methyl-3- (trifluoromethyl)-1H-pyrazol-1-yl)pyrimidin- 5-yl)-1-methyl-2-oxo-1,2-dihydropyridine- 3-carboxylic acid
The following examples were prepared using the general HATU coupling method described for Example 360 using the starting materials (SM) indicated.
5-(2-(3,5-dimethoxyphenylamino)-4-(3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxy-N- (2-morpholinoethoxy)nicotinamide
5-(2-(3,5-dimethoxyphenylamino)-4-(3-(trifluoromethyl)- 1H-pyrazol-1-yl)pyrimidin-5-yl)-2-methoxy-N- (2-methoxyethoxy)nicotinamide
To a mixture of 2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carbohydrazide (Intermediate 477, 0.58 mmol, 300 mg) and N,N-diisopropylethylamine (0.88 mmol, 0.16 mL) in DMF, was added 1,1′-carbonyldiimidazole (0.88 mmol, 142 mg) and the reaction mixture was stirred at RT for 1 h and further at 50° C. for another hour. The reaction mass was diluted with ethyl acetate (20 mL). The organic layer was separated, washed with water and brine, dried over Na2SO4, filtered and concentrated. The crude material was purified by silica gel column chromatography using ethyl acetate/hexanes (40:60) to obtain 90 mg of the title compound.
5-(2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5- yl}pyridin-3-yl)-1,3,4-oxadiazol-2(3H)-one
To a solution of the 2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}pyridine-3-carbohydrazide (Intermediate 478, 0.13 mmol, 70 mg) in dry DMF(1 mL) was added N,N-diisopropylethylamine (0.20 mmol, 26 mg, 0.34 mL) and 1,1′-carbonyldiimidazole (0.20 mmol, 32 mg). The mixture was stirred for 1 h at RT and further heated at 50° C. for 1 h. The reaction mixture was diluted with DCM (15 mL) and further washed with water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 40% EtOAc/hexanes) to afford the title compound as 35 mg of white solid.
5-(2-methoxy-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}pyridine-3-yl)-1,3,4-oxadiazol-2(3H)-one
A solution of 5-bromo-N-(3-methoxy-5-methylphenyl)-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-2-amine (Intermediate 293, 0.9 mmol, 400 mg), a mixture of ethyl 1-ethyl-2-oxo-5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1,2-dihydropyridine-3-carboxylate and [5-(ethoxycarbonyl)-1-ethyl-6-oxo-1,6-dihydropyridin-3-yl]boronic acid (Intermediate 361, 1.1 mmol based on the boronic ester, 360 mg), [1,1′-bis(diphenylphosphino)ferrocene]dichloropalladium(II)complex with CH2Cl2 (0.18 mmol, 146 mg) and sodium carbonate (0.9 mmol, 95 mg) in acetonitrile (40 mL)/water (10 mL) was degassed and heated to 90° C. for 30 minutes under nitrogen. The reaction mixture was concentrated in vacuo. The residue obtained was taken in ethyl acetate, washed with water and brine, dried over sodium sulfate and concentrated. The crude mass was purified by silica gel column chromatography (60-120 mesh) using 2% methanol/chloroform to obtain 350 mg of the title compound.
ethyl 1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-oxo-1,2-dihydropyridine-3-carboxylate
To 350 mg of ethyl 1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-oxo-1,2-dihydropyridine-3-carboxylate (Example 1171, 0.65 mmol) taken in a mixture of THF (10 mL)/H2O (10 mL), was added NaOH (1.1 mmol, 46 mg) and stirred at rt for 2 h. The solvent was removed in vacuo and the mixture was then carefully acidified with 1 N HCl and the solid that precipitate was filtered and dried to obtain 200 mg of the title compound.
1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-2-oxo-1,2-dihydropyridine-3-carboxylic acid
To a solution of 5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylic acid (Example 859, 0.19 mmol, 100 mg) in CH2Cl2 (10 mL), were added methanesulfonamide (0.29 mmol, 28 mg), triethylamine (0.57 mmol, 0.08 mL), 2-chloro-1-methylpyridinium iodide (0.2 mmol, 58 mg) and 4-(Dimethylamino)pyridine (0.04 mmol, 4 mg) and stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane (20 mL) and further washed with 10% citric acid solution (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 2% MeOH in CHCl3) to afford 85 mg of the title compound.
5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3- (trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-1-methyl-N-(methylsulfonyl)-2-oxo-1,2- dihydropyridine-3-carboxylamide
To a solution of 5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl-1-methyl-2-oxo-1,2-dihydropyridine-3-carboxylic acid (Example 861, 0.49 mmol, 250 mg) in CH2Cl2 (20 mL), was added methanesulfonamide (0.97 mmol, 92 mg), triethylamine (1.45 mmol, 0.21 mL), 2-chloro-1-methylpyridinium iodide (0.58 mmol, 150 mg) and 4-(Dimethylamino)pyridine (0.097 mmol, 12 mg) and stirred at RT for 4 h. The reaction mixture was diluted with dichloromethane (20 mL) and further washed with 1.5 N HCl (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 1% MeOH in CHCl3) to afford 120 mg of the title compound.
5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5- methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-1-methyl-N-(methylsulfonyl)-2-oxo-1,2- dihydropyridine-3-carboxamide
A mixture of 1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-oxo-1,2-dihydropyridine-3-carboxylic acid (Example 1172, 0.53 mmol, 270 mg), methanesulfonamide (0.78 mmol, 74 mg), triethylamine (1.5 mmol, 0.21 mL), 2-chloro-1-methylpyridinium iodide (0.6 mmol, 153 mg) and 4-(Dimethylamino)pyridine (0.097 mmol, 12 mg) in CH2Cl2 (10 mL), was stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane (20 mL) and further washed with 10% citric acid solution (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 2% MeOH in CHCl3) to afford 170 mg of the title compound.
1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]- 4-[3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-N-(methylsulfonyl)-2-oxo-1,2- dihydropyridine-3-carboxamide
A mixture of 1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]-4-[5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin-5-yl}-2-oxo-1,2-dihydropyridine-3-carboxylic acid (Example 863, 0.59 mmol, 310 mg) methanesulfonamide (0.87 mmol, 83 mg), triethylamine (1.5 mmol, 0.21 mL), 2-chloro-1-methylpyridinium iodide (0.6 mmol, 153 mg) and 4-(Dimethylamino)pyridine (0.097 mmol, 12 mg) in CH2Cl2 (10 mL) was stirred at RT for 2 h. The reaction mixture was diluted with dichloromethane (20 mL) and further washed with 10% citric acid (2×15 mL), water (25 mL) and brine (25 mL). The organic layer was dried over Na2SO4 and concentrated. The crude mass was purified by flash chromatography (product eluted with 3% MeOH in CHCl3) to afford 120 mg of the title compound.
1-ethyl-5-{2-[(3-methoxy-5-methylphenyl)amino]-4- [5-methyl-3-(trifluoromethyl)-1H-pyrazol-1-yl]pyrimidin- 5-yl}-N-(methylsulfonyl)-2-oxo-1,2-dihydropyridine- 3-carboxamide
This application claims the benefit of U.S. Provisional Patent Application No. 61/102583 filed on Oct. 3, 2008, the entire disclosure of which is herein incorporated by reference.
Number | Date | Country | |
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61102583 | Oct 2008 | US |