Patent Application
20240279240
The present invention relates to chemical compounds that are derivatives useful as JAK inhibitors, such as JAK 1, useful for the treatment of various inflammatory disease including asthma, COPD and other respiratory diseases.
The JAK family consists of non-receptor tyrosine protein kinases and has four main members, JAK1, JAK2, JAK3, and TYK2. More than 50 cytokines and growth factors bind to type I and II receptors noncovalently associated with different combinations of JAK kinases. The signalling triggered by the ligands consists in tyrosine phosphorylation of receptors by JAK and recruitment of one or more STATs proteins. Tyrosine-phosphorylated STATs dimerize and are then transported into the nucleus through the nuclear membrane to regulate specific genes. JAKs have seven homology domains (the JAK homology domain, JH). Starting from the carboxyl terminus, JH1 is the first JH, known as the kinase domain, and is composed of approximately 250 amino acid residues. JH1 encodes a kinase protein that constitutes the kinase structure domain that phosphorylates a substrate; JH2 is a pseudokinase domain which regulates the activity of the kinase domain. JAK3 is expressed in the bone marrow and lymphatic system, as well as endothelial cells and vascular smooth muscle cells; other members are expressed in almost all tissues (Hu X et al., Signal Transduct Target Ther. 2021, 26;6(1):402). Many cellular processes are downstream JAK/STAT signalling: hematopoiesis, immune balance, tissue repair, inflammation, apoptosis, and adipogenesis. Different biological responses are regulated by specific pairing of JAK isoforms. JAK1/JAK3 combination mediates IL-2,-4,-7,-9,-15, and -21 signalling that is relevant for growth/maturation of lymphoid cells, differentiation/homeostasis of T-cells/NK cells, B-cell class switching and other inflammatory processes. Combinations of JAK1/TYK2-JAK1/JAK2, regulate the signal associated with the innate immune response, such as IL-6 and the type I interferons, involved into naïve T cell differentiation, T cell homeostasis, granulopoiesis and other inflammatory processes. (Howell M D et al., Front. Immunol. 2019, 10, 2342). JAK2 frequently associates with itself (JAK2/JAK2) controlling the signalling of various cytokines and growth factors, such as IL-3, IL-5, granulocyte macrophage colony-stimulating factor (GM-CSF), erythropoietin (EPO), and thrombopoietin (TPO) (Hodge et al., Clin Exp Rheumatol 2016; 34(2):318-28).
Genetically modified mouse models and human diseases prove the importance of JAK/STAT pathways in immune fitness. In particular, overexpression or mutations involving some JAK isoforms as well as aberrant JAK/STAT signalling drive malignancies of hematopoietic and lymphoid tissues as well as inflammatory disorders. Currently, several Food and Drug Administration (FDA)- and/or EU-approved JAK inhibitors are in clinical use. Two (ruxolitinib and fedratinib) small molecules are in use for hematologic disorders as myelofibrosis and polycythemia vera; six JAK inhibitors (tofacitinib, baricitinib, ruxololitinib, filgotinib, upadicitinib and delgocitinib in Japan) result in use for immune-mediated disorders as rheumatoid arthritis, polyarticular juvenile idiopathic arthritis, atopic dermatitis, ulcerative colitis and acute graft-versus-host disease. Moreover, some of these drugs as well as others are currently under phase II and III of clinical trials for indications that span from autoimmune diseases (lupus, vitiligo, etc.), inflammatory bowel disease to Non-Hodgkin lymphoma and COVID-19 (Hu X. et al., Sig Transduct Target Ther 2021, 6: 402).
The small molecules targeting JAK/STAT represent an attractive option also for the therapy of fibrotic disorders. In fact, inflammatory cytokines (IL-4, IL-3, IL-6, IL-11, IL-31, etc.) and growth factors (FGF, VEGF, etc.) involved in the fibrotic processes activate JAK/STAT pathway. Ruxolitinib tested in a bleomycin-induced fibrosis mouse model ameliorated the fibrotic lesions in lung, and reduced levels of fibrotic molecular markers (Zhang, Y et al., Ann. Rheum. Dis. 2017, 76, 1467-1475) while tofacitinib acted as a preventive agent in experimental dermal and pulmonary fibrosis (Wang, W et al., Scleroderma Relat. Disord. 2020, 5, 40-50). In patients, some case reports were studied. A single-case report corroborated the efficacy and safety of tofacitinib in combination with nintedanib in the management of an aggressive interstitial lung disease with poor prognosis (Conca, W et al., Front. Pharmacol. 2020, 11, 5857619). Baricitinib was demonstrated to be a safe immune modulator that reduces the biomarkers' levels of lung fibrosis and inflammation in RA patients, including a subgroup with interstitial lung disease (D'Alessandro M et al., Int. Immunopharmacol. 2020, 86, 106748).
In COVID-19, there are some JAK inhibitors undergoing clinical trials, and they are tofacitinib, baricitinib, and ruxolitinib. Baricitinib and ruxolitinib were associated with a reduced risk of mortality. They reduced the use of invasive mechanical ventilation and had a borderline impact on the admission rate of the intensive care unit and the incidence of acute respiratory distress syndrome (ARDS). (Wijaya, I. et al. Clin. Epidemiol. Glob. Health 2021, 11, 100755). Ruxolitinib also was tested in COVID-19 patients and improved the clinical symptoms and chest computed tomography images (Cao Y. et al., J. Allergy Clin. Immunol. 2020 146, 137-146).
Asthma can be included in the plethora of immune-mediated diseases for which pathogenesis is characterized by an essential role of JAK/STAT signalling. Asthma is a chronic inflammatory disease of the airways due to a complex interplay between immune response, genetic susceptibility and nonspecific external stimuli like cold, allergens and exercise leading to hyperresponsiveness, remodelling of the airways, ultimately contributing to airflow limitation. Severe asthma affects 5% to 15% of the population with adult asthma (which is 300 million people worldwide) and represents a public health issue associated with increased mortality, increased hospitalizations, significant burden of symptoms, health care costs, and missed work and school (Steve N G et al., J Allergy Clin Immunol 2021; 148:953-63). Severe asthma represents a subset of difficult-to-treat asthma and occurs in patients whose disease remains uncontrolled despite the use of high doses of inhaled corticosteroids (ICSs) combined with long-acting β-agonists or other controllers. To date, four types of biologics are licensed for severe asthma, i.e. omalizumab (anti-immunoglobulin E) antibody, mepolizumab and reslizumab (anti-interleukin [IL]-5antibody), benralizumab (anti-IL-5 receptor alpha antibody) and dupilumab (anti-IL-4 receptor alpha antibody). Despite their efficacy, many patients continue to experience exacerbations or uncontrolled disease, indicating a need for more novel therapies (Israel E, Reddel H K. N Engl J Med 2017; 377:965-76).
Recently, the better understanding of asthma pathobiology brought to a shift from a phenotypic classification system to the introduction of the “endotype” concept. According to the latter, classification is performed on the basis of pathophysiologic mechanisms and clinical biomarkers associated with a given patient (Wenzel S E et a., Am J Respir Crit Care Med 2021; 203:809-21). There are two major endotypes in asthma: type 2 and non-type 2. The type 2 pathway is defined by activation of cytokines derived from TH2 cells and group 2 innate lymphoid cells (ILC2s); these include IL-4, IL-5, and IL-13 that cause airway inflammation by activating eosinophils, B cells, airway epithelial cells, and other cell types. Biomarkers of type 2 asthma include blood/sputum eosinophilia and elevated levels of fractional exhaled nitric oxide (FENO) and IgE. The type 2-low pathway is characterized by absence of type 2-high cytokines and biomarkers, and it manifests either increased levels of neutrophils in the airways or a paucigranulocytic profile, with normal levels of airway neutrophils and eosinophils. Type 2-low asthma is currently not well understood, and it likely encompasses multiple distinct endotypes. Potential mediators and/or biomarkers of T2 low endotypes under investigation include IL-6, IL-17A/F, IL-23, Type I interferons, CXCL10, TNF, alarmins (TSLP, IL-25, IL-33), IL-1, IL-8, IFN-γ (Hinks T S C et al., ERJ 2021, 57 (1) 2000528).
Almost all the mediators mentioned above both for T2 and T2-low endotypes activate JAK/STAT pathway, here the rationale for the potential use of JAK inhibitors in both endotypes of severe asthma. Targeting simultaneously several cytokines by JAK inhibitors may offer advantage over the biologics (for no-responder patients) and standard therapies (for patients who remain uncontrolled) considering their administration on top of ICS.
Despite strong rationale of JAK inhibitors in asthma, safety concerns may arise by administration of systemic inhibitors or may limits administration into particular asthma subjects such as children. Considering that Asthma is a lung restricted disease, inhalatory route of administration for a JAK inhibitor may offers the advantage of therapeutic efficacy while limiting systemic exposure and correlated side effects. To date, some companies are developing inhaled JAK inhibitor for asthma treatment. Astrazeneca pipeline include AZD-0449 (completed Phase I clinical trial) and AZD-4604 (ongoing Phase I clinical trial); Theravance Biopharma is starting a new preclinical program on TD-8236 inhaled JAK inhibitor and Kinaset/Vectura is developing VR588 (ongoing Phase I clinical trial) as inhalatory compound. Many preclinical studies sponsored by the companies mentioned above demonstrated the efficacy of JAK inhibitors in the modulation of asthma. In the preclinical phase of drug development, JAK⅓ inhibitor R256 (now referred as AZD0449) orally given showed be effective in decreasing airway resistance, BAL eosinophilia, mucus production and if administered during sensitization, also TH2 cytokine responses (Ashino S et al., J Allergy Clin Immunol 2014; 133:1162-74). iJak-381 from Genentech given as dry powder reduced BAL eosinophilia, CCL11, airway resistance, and Muc5AC in OVA-challenged mice. Moreover, it reduced BAL eosinophilia, neutrophilia, CCL11, and CXCL1 in a in mouse model of chronic exposure to AAH allergens (Dengler H S et al., Sci Transl Med 2018;10:eaao2151). Moreover, an oral JAK inhibitor as Tofacitinib, formulated for being administered as aerosol, reduced eosinophils count in a house dust mite mouse model of asthma (Younis U S et al., AAPS PharmSci-Tech 2019; 20:167).
Another respiratory disease that could benefit from lung restricted JAK inhibition is Chronic obstructive pulmonary disease (COPD), an inflammatory disease of the lung, most commonly resulting from cigarette smoke exposure, characterised by a largely irreversible and progressive airflow limitation. Despite inflammatory cytokines are drivers of chronic airway inflammation and some of them trigger JAK/STAT activation (IL-6, IFN-γ, IL-2, etc.), the role of this pathway in COPD pathogenesis is poorly characterized. Phosphorylated-STAT4+ cells (Di Stefano A et al., Eur Respir J. 2004 July; 24(1):78-85) were found to be increased in COPD compared to non-smokers healthy controls. In another study, phosphorylated-STAT3+ and phosphorylated-STAT1+ cells counts were higher in lung biopsies of COPD patients than non-smokers controls while it was not possible to reproduce previous data on phosphorylated-STAT4 molecule (Yew-Booth L et al., Eur Respir J 2015; 46(3):843-5). These data might also suggest a therapeutic use of JAK inhibitors also in COPD disease.
In view of the number of pathological responses, which are mediated by JAK enzymes, there is a continuing need for inhibitors of JAK enzymes which can be useful in the treatment of many disorders and particularly respiratory diseases.
Thus, the finding of novel and potent JAK inhibitor suitable for local administration to the lungs for treatment of asthma and respiratory disease still remains an important need.
Accordingly, it is one object of the present invention to provide compounds of formula (I)
Wherein W, X1, X2, X3, X4, R1, R2, R3 are as defined in the detailed description of the invention; or a pharmaceutically-acceptable salt thereof, that are useful as JAK kinase inhibitors.
It is another object of the present invention to provide pharmaceutical compositions comprising such compounds, methods of using such compounds to treat respiratory diseases, and processes and intermediates useful for preparing such compounds.
In one aspect, the present invention provides a compound of formula (I) for use as a medicament. In one aspect the present invention provides the use of a compound of the invention for the manufacture of a medicament.
In a further aspect, the present invention provides the use of a compound of the invention for the preparation of a medicament for the treatment of any disease associated with JAK enzyme mechanisms.
In another aspect, the present invention provides a method for prevention and/or treatment of any disease associated with JAK enzyme mechanisms as above defined, said method comprises administering to a patient in need of such treatment a therapeutically effective amount of a compound of the invention.
In a Particular aspect the compounds of the invention are used alone or combined with other active ingredients and may be administered for the prevention and/or treatment of a pulmonary disease including asthma, Chronic obstructive pulmonary disease (COPD), cystic fibrosis (CF), interstitial lung diseases and idiopathic pulmonary fibrosis (IPF), acute lung injury and acute respiratory distress syndrome (ARDS).
The term “Pharmaceutically acceptable salts” refers to derivatives of compounds of formula (I) wherein the parent compound is suitably modified by converting any of the free acid or basic group, if present, into the corresponding addition salt with any base or acid conventionally intended as being pharmaceutically acceptable.
Suitable examples of said salts may thus include mineral or organic acid addition salts of basic residues such as amino groups, as well as mineral or organic basic addition salts of acid residues such as carboxylic groups.
Cations of inorganic bases which can be suitably used to prepare salts of the invention comprise ions of alkali or alkaline earth metals such as potassium, sodium, calcium or magnesium. Those obtained by reacting the main compound, functioning as a base, with an inorganic or organic acid to form a salt comprise, for example, salts of hydrochloric, hydrobromic, sulfuric, phosphoric, methanesulfonic, camphorsulfonic, acetic, oxalic, maleic, fumaric, succinic and citric acids.
Many organic compounds can form complexes with solvents in which they are reacted or from which they are precipitated or crystallized. These complexes are known as “solvates” which are a further object of the invention. Polymorphs and crystalline forms of compounds of formula (I), or of pharmaceutically acceptable salts, or solvates thereof are a further object of the invention.
The term “Halogen” or “halogen atoms” includes fluorine, chlorine, bromine, and iodine atom; meaning Fluoro, Chloro, Bromo, Iodo as substituent.
The term “(C1-C6)Alkyl” refers to straight-chained or branched alkyl groups wherein the number of carbon atoms is in the range 1 to 6. Particular alkyl groups are for example methyl, ethyl, n-propyl, isopropyl, t-butyl, 3-methylbutyl and the like.
The expressions “(C1-C6)Haloalkyl” refer to the above defined “(C1-C6)alkyl” groups wherein one or more hydrogen atoms are replaced by one or more halogen atoms, which can be the same or different from each other. Examples include halogenated, poly-halogenated and fully halogenated alkyl groups wherein all of the hydrogen atoms are replaced by halogen atoms, e.g. trifluoromethyl or difluoro methyl groups.
By way of analogy, the terms “(C1-Cx) hydroxyalkyl” or “(C1-Cx)aminoalkyl” refer to the above defined “(C1-Cx) alkyl” groups wherein one or more hydrogen atoms are replaced by one or more hydroxy (OH) or amino group respectively.
The definition of aminoalkyl encompasses alkyl groups (i.e. “(C1-C6)alkyl” groups) substituted by one or more amino groups (—NR4R5). An example of aminoalkyl is a mono-aminoalkyl group such as R4R5N—(C1-C6)alkyl, or —(CH2)mNR4R5. wherein R4 and R5 and m are as defined in the detailed description of the invention.
With reference to the substituent R4 and R5 as above defined, it is here further explained that when either R4 and R5 are taken together with the nitrogen atom they are linked to form a 5 to 6 membered heterocyclic radical, at least one further ring carbon atom in the said heterocyclic radical may be replaced by at least one heteroatom or hetero-group (e.g. N, NH, S or O) or may bear an-oxo (═O) substituent group. The said heterocyclic radical might be further optionally substituted on the available points in the ring, namely on a carbon atom, or on an heteroatom or hetero-group available for substitution. Thus, Examples of said heterocycle radicals are 1-pyrrolidinyl, 1-piperidinyl, 1-piperazinyl, 4-morpholinyl, piperazin-4yl-2-one, 4-methylpiperazine-1-yl.
The term “(C3-C10)cycloalkyl” likewise “(C3-C6)cycloalkyl” refers to saturated cyclic hydrocarbon groups containing the indicated number of ring carbon atoms. Examples include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl and cycloheptyl, and polycyclic ring systems such as adamantan-yl.
The expression “Aryl” refers to mono, bi- or tri-cyclic carbon ring systems, which have 6 to 20, preferably from 6 to 15 ring atoms, wherein at least one ring is aromatic. The expression “heteroaryl” refers to mono-, bi- or tri-cyclic ring systems with 5 to 20, preferably from 5 to 15 ring atoms, in which at least one ring is aromatic and in which at least one ring atom is a heteroatom (e.g. N, S or O).
Examples of aryl or heteroaryl monocyclic ring systems include, for instance, phenyl, thienyl, pyrrolyl, pyrazolyl, imidazolyl, isoxazolyl, oxazolyl, isothiazolyl, thiazolyl, pyridinyl, pyrimidinyl, pyrazinyl, pyridazinyl, triazinyl, furanyl radicals and the like.
Examples of aryl or heteroaryl bicyclic ring systems include naphthalenyl, biphenylenyl, purinyl, pteridinyl, pyrazolopyrimidinyl, benzotriazolyl, benzoimidazole-yl, quinolinyl, isoquinolinyl, indolyl, isoindolyl, indazolyl, benzothiopheneyl, benzodioxinyl, dihydrobenzodioxinyl, indenyl, dihydro-indenyl, dihydrobenzo[1,4]dioxinyl, benzothiazole-2-yl, dihydrobenzodioxepinyl, benzooxazinyl, 1,2,3,4-tetrahydroisoquinoline-6-yl, 4,5,6,7-tetrahydrothiazolo[4,5-c]pyridine, 4,5,6,7-tetrahydrobenzo[d]thiazol-2-yl, 5,6,7,8-tetrahydro-1,7-naphthyridine, radicals and the like.
Examples of aryl or heteroaryl tricyclic ring systems include fluorenyl radicals as well as benzocondensed derivatives of the aforementioned heteroaryl bicyclic ring systems.
The derived expression “(C3-C10)heterocycloalkyl” likewise “(C3-C6) heterocycloalkyl” refers to saturated or partially unsaturated mono, bi- or tri-cycloalkyl groups of the indicated number of carbons, in which at least one ring carbon atom is replaced by at least one heteroatom (e.g. N, NH, S or O) and/or may bear an-oxo (═O) substituent group (e.g. C(═O), S(═O)2). Said heterocycloalkyl (i.e. heterocyclic radical or group) is further optionally substituted on the available points in the ring, namely on a carbon atom, or on an heteroatom available for substitution. Examples of heterocycloalkyl are represented by: oxetanyl, tetrahydro-furanyl, pyrrolidinyl, imidazolidinyl, thiazolidinyl, piperazinyl, piperidinyl, morpholinyl, thiomorpholinyl, dihydro- or tetrahydro-pyridinyl, tetrahydropyranyl, pyranyl, 2H— or 4H-pyranyl, dihydro- or tetrahydrofuranyl, dihydroisoxazolyl, pyrrolidin-2-one-yl, dihydropyrrolyl, 5-oxopyrrolidin-3-yl, (1R,5S,6r)-3-oxabicyclo[3.1.0]hexan-6-yl, 1,1-dioxidothiomorpholino, octahydrocyclopenta[c]pyrrol-5-yl, 4,5,6,7-tetrahydropyrazolo[1,5-a]pyrazin-2-yl; 4,5,6,7-tetrahydrothiazolo[5,4-c]pyridin-2-yl radicals and the like.
The term “Aryl(C1-C6)alkyl” refers to an aryl ring linked to a straight-chained or branched alkyl group wherein the number of constituent carbon atoms is in the range from 1 to 6, e.g. phenylmethyl (i.e. benzyl), phenylethyl or phenylpropyl.
Likewise the term “Heteroaryl(C1-C6)alkyl” refers to an heteroaryl ring linked to a straight-chained or branched alkyl group wherein the number of constituent carbon atoms is in the range from 1 to 6, e.g. furanylmethyl.
The term “alkanoyl”, refers to HC(O)— or to alkylcarbonyl groups (e.g. (C1-C6)alkylC(O)—) wherein the group “alkyl” has the meaning above defined. Examples include formyl, acetyl, propanoyl, butanoyl.
The term “(C1-C10) alkoxy” or “(C1-C10) alkoxyl”, likewise “(C1-C6) alkoxy” or “(C1-C6) alkoxyl” etc., refers to a straight or branched hydrocarbon of the indicated number of carbons, linked to the rest of the molecule through an oxygen bridge. “(C1-C6)Alkylthio” refers to the above hydrocarbon linked through a sulfur bridge. Likewise the term “(C1-C6)Alkylthio” refers to the above defined haloalkyl, linked through a sulfur bridge. Examples of (C1-C6)Alkylthio and (C1-C6)Alkylthio are respectively methylthio, (difluoromethyl)thio.
The derived expression “(C1-C6)haloalkoxy” or “(C1-C6)haloalkoxyl” refers to the above defined haloalkyl, linked through an oxygen bridge. Example of (C1-C6)haloalkoxy is difluoromethoxy, trifluoromethoxy.
Likewise derived expression “(C3-C6)heterocycloalkyl-(C1-C6)alkyl” and “(C3-C6)cycloalkyl-(C1-C6)alkyl” refer to the above defined heterocycloalkyl and cycloalkyl groups linked to the rest of the molecule via an alkyl group of the indicated number of carbons, for example piperidin-4-yl-methyl, cyclohexylethyl.
The derived expression “(C1-C6)alkoxy (C1-C6)alkyl” refers to the above defined alkoxy group linked to the rest of the molecule via an alkyl group of the indicated number of carbons, for example methoxymethyl.
Likewise “(C1-C6)haloalkoxy(C1-C6)alkyl” refers to the above defined (C1-C6)haloalkoxy” group linked to the rest of the molecule via an alkyl group of the indicated number of carbons, for example difluoromethoxypropyl.
Likewise “(C1-C6)alkoxycarbonyl” refers to the above defined alkoxy group linked to the rest of the molecule via an carbonyl group.
And “(C1-C6)alkoxycarbonyl-(C1-C6)alkyl” refers to the above defined alkoxy group linked to the rest of the molecule via an carbonyl group further enchained with an alkyl group of the indicated number of carbons, for example methoxycarbonylmethyl.
And “(C1-C6)alkoxycarbonyl-(C1-C6)alkylthio consequently refer to enchained groups like methoxycarbonylmethylthio
An oxo moiety is represented by (O) as an alternative to the other common representation, e.g. (═O). Thus, in terms of general formula, the carbonyl group is herein preferably represented as —C(O)— as an alternative to the other common representations such as —CO—, —(CO)— or —C(═O)—. In general the bracketed group is a lateral group, not included into the chain, and brackets are used, when deemed useful, to help disambiguating linear chemical formulas; e.g. the sulfonyl group —SO2— might be also represented as —S(O)2— to disambiguate e.g. with respect to the sulfinic group —S(O)O—.
When a numerical index the statement (value) “p is zero” or “p is 0” means that the substituent or group bearing the index p (e.g. (R)p) is absent, that is to say no substituent, other than H when needed, is present. Likewise when the index is attached to a bridging divalent group (e.g. (CH2)n) the statement “n in each occurrence is zero . . . ” or “n is 0” means that the bridging group is absent, that is to say it is a bond.
Whenever basic amino or quaternary ammonium groups are present in the compounds of formula (I), physiological acceptable anions, selected among chloride, bromide, iodide, trifluoroacetate, formate, sulfate, phosphate, methanesulfonate, nitrate, maleate, acetate, citrate, fumarate, tartrate, oxalate, succinate, benzoate, p-toluenesulfonate, pamoate and naphthalene disulfonate may be present. Likewise, in the presence of acidic groups such as COOH groups, corresponding physiological cation salts may be present as well, for instance including alkali or alkaline earth metal ions.
Compounds of formula (I) when they contain one or more stereogenic center, may exist as optical stereoisomers.
Where the compounds of the invention have at least one stereogenic center, they may accordingly exist as enantiomers. Where the compounds of the invention possess two or more stereogenic centers, they may additionally exist as diastereoisomers. It is to be understood that all such single enantiomers, diastereoisomers and mixtures thereof in any proportion are encompassed within the scope of the present invention. The absolute configuration (R) or (S) for carbon bearing a stereogenic center is assigned on the basis of Cahn-Ingold-Prelog nomenclature rules based on groups' priorities.
“Single stereoisomer”, “single diastereoisomer” or “single enantiomer”, when reported near the chemical name of a compound indicate that the isomer was isolated as single diastereoisomer or enantiomer (e.g. via chiral chromatography) but the absolute configuration at the relevant stereogenic center was not determined/assigned.
Atropisomers result from hindered rotation about single bonds where the steric strain barrier to rotation is high enough to allow for the isolation of the conformers (Bringmann G et al, Angew. Chemie Int. Ed. 44 (34), 5384-5427, 2005. doi:10.1002/anie.200462661).
Oki defined atropisomers as conformers that interconvert with a half-life of more than 1000 seconds at a given temperature (Oki M, Topics in Stereochemistry 14, 1-82, 1983).
Atropisomers differ from other chiral compounds in that in many cases they can be equilibrated thermally whereas in the other forms of chirality isomerization is usually only possible chemically.
Separation of atropisomers is possible by chiral resolution methods such as selective crystallization. In an atropo-enantioselective or atroposelective synthesis one atropisomer is formed at the expense of the other. Atroposelective synthesis may be carried out by use of chiral auxiliaries like a Corey Bakshi Shibata (CBS) catalyst, an asymmetric catalyst derived from proline, or by approaches based on thermodynamic equilibration when an isomerization reaction favors one atropisomer over the other.
Racemic forms of compounds of formula (I) as well as the individual atropisomers (substantially free of its corresponding enantiomer) and stereoisomer-enriched atropisomer mixtures are included in the scope of the present invention.
The invention further concerns the corresponding deuterated derivatives of compounds of formula (I). In the context of the present invention, deuterated derivative means that at least one position occupied by a hydrogen atom is occupied by deuterium in an amount above its natural abundance. Preferably, the percent of deuterium at that position is at least 90%, more preferably at least 95%, even more preferably 99%.
All preferred groups or embodiments described above and here below for compounds of formula (I) may be combined among each other and apply as well mutatis mutandis.
As above mentioned, the present invention refers to compounds of general formula (I), acting as JAK inhibitors, to processes for the preparation thereof, pharmaceutical compositions comprising them either alone or in combination with one or more active ingredient, in admixture with one or more pharmaceutically acceptable carriers.
In a first aspect the present invention is directed to a class of compounds derivatives of formula I
Preferably compounds according to the invention are 1H-pyrazolo[4,3-c]pyridine, 1H-pyrazolo[4,3-b]pyridine or 1H-pyrazolo[3,4-b]pyridine derivatives.
Particularly preferred are 1H-pyrazolo[4,3-c]pyridine derivatives compounds of formula I, wherein, X1 is CR3 (meaning CH substituted by R3) and X2 is N; X3 is CR2 (meaning CH substituted by R2) and X4 is N, that are compounds having 1H-pyrazolo[4,3-c]pyridine scaffold represented by the formula (Io)
In a preferred embodiment the present invention provides compounds of formula (Io) further having R1 which is phenyl substituted by 2 or 3 groups, independently selected from
The said preferred compounds showed advantageously balanced profile for inhalatory admistration.
In another preferred embodiment the present invention provides compounds of formula (Io) further having R2 which is a group J and R1 which is a substituted phenyl, as represented in formula (Ib)
In a preferred embodiment the present invention provides compounds of formula (Io) further having W which is (3-oxo-3,4-dihydropyrazin-2-yl)amino, as represented in formula (Ib1)
Thus, a group of particularly preferred compounds are
The said preferred compounds showed balanced profile for inhalatory admistration and preferably inhibitory concentration lower than 50 nM at least on JAK1-2-3.
Another particularly preferred embodiment is directed to compounds of formula I
Wherein, X1 and X2 are alternatively N or CH; and
X3 and X4 are alternatively N or CH, and the two dashed lines indicate that a double bond is accordingly alternatively between X3═N or between N═X4, W is a heteroaryl selected from pyrazolo[1,5-a]pyrimidin-3-yl, imidazo[1,2-b]pyridazin-3-yl
R1 is selected in the group piperidinyl, phenyl or benzyl optionally substituted by one or more group selected from cyanomethylcarbonyl, difluoromethoxy, Cl and F.
R2 is methyl or selected from hydroxycarbonylmethyl, metoxycarbonylmethyl, dimethylaminocarbonylmethyl, hydroxymethyl;
or pharmaceutically acceptable salts and solvates thereof.
According to specific embodiments, the present invention provides the compounds of examples 1a-10a (according to the last preferred embodiment described hereabove) and further compounds of examples 1-99, as listed in the table below, and pharmaceutical acceptable salts and solvates thereof.
10a
The compounds of the invention, including all the compounds here above listed, can be prepared from readily available starting materials using general methods and procedures as described in the experimental part below or by using slightly modified processes readily available to those of ordinary skill in the art. Although a particular embodiment of the present invention may be shown or described herein, those skilled in the art will recognize that all embodiments or aspects of the present invention can be prepared using the methods described herein or by using other known methods, reagents and starting materials. When typical or preferred process conditions (i.e. reaction temperatures, times, mole ratios of reactants, solvents, pressures, etc.) are given, other process conditions can also be used unless otherwise stated. While the optimum reaction conditions may vary depending on the particular reactants or solvent used, such conditions can be readily determined by those skilled in the art by routine optimization procedures. The general schemes and detailed procedures are described in the PREPARATION OF INTERMEDIATES AND EXAMPLES sections below.
As herein described in detail, the compounds of the invention are inhibitors of kinase activity, in particular, inhibiting JAK kinase activity for the treatment of JAK-dependent diseases.
In one aspect the invention provides compounds according to the invention, i.e. a compound of formula (I) or a pharmaceutical composition thereof, for use as a medicament, preferably for the prevention and/or treatment of respiratory and specifically pulmonary disease.
In a further aspect the invention provides the use of a compound (I), or a pharmaceutically acceptable salt thereof, in the manufacture of a medicament for the treatment of disorders associated with JAK mechanisms, particularly for the treatment of disorders such as respiratory and pulmonary diseases.
In particular the invention provides compounds of formula (I) for use in the prevention and/or treatment of pulmonary disease selected from the group consisting of asthma, chronic obstructive pulmonary disease COPD, idiopathic pulmonary fibrosis (IPF)acute lung injury and acute respiratory distress syndrome (ARDS).
Moreover, the invention provides a method for the prevention and/or treatment of disorders associated with JAK mechanisms, said method comprising administering to a patient in need of such treatment a therapeutically effective amount of a compound of the invention.
In particular, the invention provides methods for the prevention and/or treatment wherein the disorder is a respiratory disease selected from asthma, chronic obstructive pulmonary disease (COPD), idiopathic pulmonary fibrosis (IPF), acute lung injury and acute respiratory distress syndrome (ARDS).
Preferred is the use of the compounds of the invention for the prevention of the aforesaid disorders.
Equally preferred is the use of the compounds of the invention for the treatment of the aforesaid disorders.
Generally speaking, compounds which are JAK inhibitors may be useful in the treatment of many disorders associated with JAK enzyme mechanisms.
In one embodiment, the disorder that can be treated by the compound of the present invention is selected from the group consisting of asthma, chronic obstructive pulmonary disease (COPD) and interstitial lung disease such as idiopathic pulmonary fibrosis (IPF), acute lung injury and acute respiratory distress syndrome (ARDS).
In a further embodiment, the disorder is selected from asthma and chronic obstructive pulmonary disease (COPD).
The methods of treatment of the invention comprise administering an effective amount of a compound of formula (I) or a pharmaceutically acceptable salt thereof to a patient in need thereof. As used herein, “effective amount” in reference to a compound of formula (I) or a pharmaceutically acceptable salt thereof or other pharmaceutically-active agent means an amount of the compound sufficient to treat the patient's condition but low enough to avoid serious side effects and it can nevertheless be routinely determined by the skilled artisan. The compounds of formula (I) or pharmaceutically acceptable salts thereof may be administered once or according to a dosing regimen wherein a number of doses are administered at varying intervals of time for a given period of time. Typical daily dosages may vary depending upon the particular route of administration chosen.
The invention also provides pharmaceutical compositions of compounds of formula (I) in admixture with one or more pharmaceutically acceptable carrier or excipient, for example those described in Remington's Pharmaceutical Sciences Handbook, XVII Ed., Mack Pub., N.Y., U.S.A.
The present invention is also directed to use of the compounds of the invention and their pharmaceutical compositions for various route of administration.
Administration of the compounds of the invention and their pharmaceutical compositions may be accomplished according to patient needs, for example, orally, nasally, parenterally (subcutaneously, intravenously, intramuscularly, intrasternally and by infusion), by inhalation, rectally, vaginally, topically, locally, transdermally, and by ocular administration.
Various solid oral dosage forms can be used for administering compounds of the invention including such solid forms as tablets, gelcaps, capsules, caplets, granules, lozenges and bulk powders. The compounds of the present invention can be administered alone or combined with various pharmaceutically acceptable carriers, diluents (such as sucrose, mannitol, lactose, starches) and known excipients, including suspending agents, solubilizers, buffering agents, binders, disintegrants, preservatives, colorants, flavorants, lubricants and the like. Time release capsules, tablets and gels are also advantageous.
Various liquid oral dosage forms can also be used for administering compounds of the invention, including aqueous and non-aqueous solutions, emulsions, suspensions, syrups, and elixirs. Such dosage forms can also contain suitable known inert diluents such as water and suitable known excipients such as preservatives, wetting agents, sweeteners, flavorants, as well as agents for emulsifying and/or suspending the compounds of the invention. The compounds of the present invention may be formulated as injectable composition, for example to be injected intravenously, in the form of an isotonic sterile solution. Other preparations are also possible.
Suppositories for rectal administration of the compounds of the invention can be prepared by mixing the compound with a suitable excipient such as cocoa butter, salicylates and polyethylene glycols.
Formulations for vaginal administration can be in the form of cream, gel, paste, foam, or spray formula containing, in addition to the active ingredient, such as suitable carriers, are also known.
For topical administration the pharmaceutical composition can be in the form of creams, ointments, liniments, lotions, emulsions, suspensions, gels, solutions, pastes, powders, sprays, and drops suitable for administration to the skin, eye, ear or nose.
Topical administration may also involve transdermal administration via means such as transdermal patches.
For the treatment of the diseases of the respiratory tract, the compounds according to the invention, as above said, may be administered by inhalation.
Inhalable preparations include inhalable powders, propellant-containing metering aerosols or propellant-free inhalable formulations and may be administered through a suitable inhalation device which may be respectively selected from dry powder inhaler, pressurized metered dosed inhaler, or a nebulizer.
For administration as a dry powder, single- or multi-dose inhalers known from the prior art may be utilized. In that case the powder may be filled in gelatine, plastic or other capsules, cartridges or blister packs or in a reservoir.
A diluent or carrier, e.g. lactose or any other additive suitable for improving the respirable fraction may be added to the powdered compounds of the invention.
Inhalation aerosols containing propellant gas such as hydrofluoroalkanes may contain the compounds of the invention either in solution or in dispersed form. The propellant-driven formulations may also contain other ingredients such as co-solvents, stabilizers and optionally other excipients.
The propellant-free inhalable formulations comprising the compounds of the invention may be in the form of solutions or suspensions in an aqueous, alcoholic or hydroalcoholic medium and they may be delivered by jet or ultrasonic nebulizers known from the prior art or by soft-mist nebulizers such as Respimat©, a registered trademark of Boehringer Ingelheim Pharmaceuticals (Wachtel, H., Kattenbeck, S., Dunne, S. et al. Pulm Ther (2017) 3: 19.
The compounds of the invention, regardless of the route of administration, can be administered as the sole active agent or in combination (i.e. as co-therapeutic agents administered in fixed dose combination or in combined therapy of separately formulated active ingredients) with other pharmaceutical active ingredients.
The compounds of the invention can be administered as the sole active agent or in combination with other pharmaceutical active ingredients including those currently used in the treatment of respiratory disorders, and known to the skilled person, such as beta2-agonists, antimuscarinic agents, corticosteroids mitogen-activated kinases (P38 MAP kinases) inhibitors, nuclear factor kappa-B kinase subunit beta inhibitors (IKK2), human neutrophil elastase (HNE) inhibitors, phosphodiesterase 4 (PDE4) inhibitors, leukotriene modulators, non-steroidal anti-inflammatory agents (NSAIDs) and mucus regulators).
The invention is also directed to a kit comprising the pharmaceutical compositions of compounds of the invention alone or in combination with or in admixture with one or more pharmaceutically acceptable carriers and/or excipients and a device, which may be a single- or multi-dose dry powder inhaler, a metered dose inhaler or a nebulizer.
The dosages of the compounds of the invention depend upon a variety of factors including the particular disease to be treated, the severity of the symptoms, the route of administration, the frequency of the dosage interval, the particular compound utilized, the efficacy, toxicology profile, and pharmacokinetic profile of the compound.
A pharmaceutical composition comprising a compound of the invention suitable to be administered by inhalation is in various respirable forms, such as inhalable powders (DPI), propellant-containing metering aerosols (PMDI) or propellant-free inhalable formulations (e.g. UDV).
The invention is also directed to a device comprising the pharmaceutical composition comprising a compound according to the invention, which may be a single- or multi-dose dry powder inhaler, a metered dose inhaler and a nebulizer particularly soft mist nebulizer.
The following examples illustrate the invention in more detail.
The features of the invention will become apparent in the course of the following descriptions of exemplary embodiments which are given for illustration of the invention and are not intended to be limiting thereof.
The following compounds of Example 1a-10a reported in table 1 below were prepared and characterized as follows:
The compound of Example 1a was prepared according to the following scheme:
A round-bottom flask was charged with 1-(5-bromo-3-fluoro-2-pyridyl)ethanone (2.00 g, 9.2 mmol), [5-chloro-2-(difluoromethoxy)phenyl]hydrazine hydrochloride (2.47 g, 10 mmol) and potassium carbonate (3.80 g, 28 mmol) in dimethylformammide (16 mL) and the reaction mixture stirred at 85° C. for 1.5 hours, then 120° C. for 4 h. After cooling to room temperature, the reaction mixture was diluted with ethyl acetate (80 mL), washed with aqueous saturated NaCl (3×30 mL) and the organic layer dried over Na2SO4. Solvent was partially removed under reduced pressure, and a solid was formed from the crude by standing at room temperature. The solid was filtered, washed with petrol ether and then dried to give the title product (1.797 g). ES+ m/z 388.0/390.0/392.0 [MH]+
In a round-bottom flask under nitrogen were charged Intermediate 1A (200 mg, 0.51 mmol) and 1,2-dichloroethane (4.0 mL), then N-Bromosuccinimide (110 mg, 0.62 mmol) and AIBN (2,2′-Azobis(2-methylpropionitrile) (17 mg, 0.1 mmol) were added. The reaction mixture was heated at 80° C. for 2 h, then cooled to room temperature and quenched with water (10 mL). The resulting mixture was extracted with dichloromethane (3×5 mL), and the combined organics washed with aqueous saturated NaCl (10 mL) and dried over Na2SO4. After evaporation under reduced pressure, the crude was purified by SPE (solid phase extraction) on silica gel to give the title compound (134 mg). ES+ m/z 465.9/467.9/469.9/491.9 [MH]+.
A vial charged with Intermediate 2A (140 mg, 0.30 mmol), dimethylformamide (1.5 mL) and potassium acetate (103 mg, 1.0 mmol was heated at 60° C. for 1.5 hours. Reaction mixture was diluted with water (10 mL) and extracted with ethyl acetate (3×5 mL). Combined organics were washed with aqueous saturated NaCl (2×5 mL), dried over Na2SO4 and evaporated to dryness. The crude product was used in the next synthetic steps without further purification. ES+ m/z 446.0/448.0/450.0 [MH]+.
Intermediate 3A (83 mg, 0.16 mmol) in THE (1 mL) and potassium phosphate tribasic solution (0.50 M, 0.65 mL, 0.33 mmol) in water were degassed with nitrogen for 10 min, then 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (44 mg, 0.18 mmol) and XPhos-Pd-G3 ((2-Dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate) (6.9 mg, 0.0082 mmol) were added. The reaction mixture was heated at 55° C. for 1.5 hours, cooled to room temperature and diluted with dichloromethane (10 mL) and water (10 mL). Aqueous layer was extracted with dichloromethane (4×5 mL), then combined organics washed with water (10 mL) and dried over Na2SO4. Solvent was removed under reduced pressure and crude residue purified by SPE (solid phase extraction) on silica gel to afford the title compound (66 mg). ES+ m/z 485.1.1/487.1 [MH]+.
A round-bottom flask was charged with Intermediate 4A (95%, 48 mg, 0.094 mmol) and methanol (5 mL), then K2CO3 (0.039 g, 0.28 mmol) was added and the mixture stirred at room temperature overnight. Solvent was evaporated and the crude residue purified by SPE (solid phase extraction) on silica gel to afford the title compound (30 mg). ES+ m/z 443.1/445.1 [MH]+.
The compounds of example 2a-10a were prepared in a similar manner to Example 1a, following the same synthetic sequence; modification of reaction conditions reactants or solvent used can be readily determined by those skilled in the art by routine optimization procedures.
Biochemical Potency JAK1 (Data displayed into the table 1 as PIC50)
The objective of this study was to assess the activity of novel JAK inhibitors measuring the capability of compounds to inhibit JAK1 kinase activity in a biochemical time-resolved fluorescence resonance energy transfer (TR-FRET) LANCE assay. In LANCE Ultra kinase assay in the presence of JAK1 kinase and ATP (corresponding to Km), the ULight peptide substrate (LANCE Ulight-JAK-1 (Tyr1023) Peptide, Perkin Elmer, TRF0121) was phosphorylated. It was then captured by a Eu-anti-phospho-substrate antibody (LANCE Eu-W1024 Anti-phosphotyrosine (PT66), Perkin Elmer, AD0069), which brought the Eu-chelate donor and ULight acceptor dyes into close proximity. Upon excitation at 320 nm, the Eu-chelate transfers its energy to the ULight dye, resulting in a fluorescent light emission at 665 nm. Inhibitors were tested at 11 consecutive 5-fold dilutions starting from 30 μM (30 μM-3 μM) in duplicate. Calculation of IC50 data, curves and QC analysis were made using Excel tools and GraphPadPrism software. QC criteria parameters: Z′≥0.5, Hill Slope range 0.5 to 5, S:B>2.
In addition to enzymatic potency, the effects of the inhibitors against JAK1/JAK3 activity in a cellular assay was characterized against IL-2 induced phosphorylation of STAT5 level in human peripheral blood mononuclear cells (PBMCs).
Cell Based assay PBMC (IL-2 stimulated pSTAT5) (Data displayed into the table as PIC50)
PBMC have been isolated from human healthy volunteers. Cells were seeded in wells and treated with compounds and rh IL-2. After 30 min incubation cells were lysed and pSTAT5 determined by PathScan phospho-stat5 (Tyr694) ELISA (Cell signaling). Inhibitors were tested at 11 consecutive 5-fold dilutions starting from 30 μM (30 μM-3 μM) in duplicate. Calculation of IC50 data, curves and QC analysis were made using Excel tools and GraphPadPrism software. QC criteria parameters: Z′≥0.35, Hill Slope range 0.5 to 5, S:B>2.
NMR spectra were recorded on a Bruker Avance III 600 (5 mm RT inverse probehead), Bruker DRX 500, Bruker Avance AV 400 (5 mm RT direct probehead) and Bruker DPX 300 spectrometers using standard Bruker pulse sequences. DMSO-d6 or CDCl3 were used as solvents and TMS as the internal standard unless in the latter case where solvent residual peak was used. All experiments were recorded at 25° C., unless stated differently.
LC-MS spectra were recorded on Acquity UPLC coupled with SQD mass spectrometer. Chromatographic Columns: Acquity UPLC BEH C18 (50 mm×2.1 mm i.d., 1.7 m packing diameter), or Acquity UPLC BEH C18 (50 mm×2.1 mm i.d., 1.7 m packing diameter), column temperature 40° C. Mobile phase: A==0.1% v/v solution of formic acid in water, B=0.1% v/v solution of formic acid in acetonitrile or A=10 mM aqueous solution of NH4HCO3 (adjusted to pH 10 with ammonia) and B=Acetonitrile. Analytical samples were dissolved in mixture of water:acetonitrile (1:1). If necessary about 10% of dmso was used in order to improve solubility.
Processes of preparation described below and reported in the following schemes should not be viewed as limiting the scope of the synthetic methods available for the preparation of the compounds of the invention.
Those skilled in the art will recognize that all embodiments or aspects of the present invention (including examples 1a to 10a) can be prepared using the methods described herein or easily adapted by using other known methods, reagents and starting materials.
In some cases a step is needed in order to mask or protect sensitive or reactive moieties, generally known protective groups (PG) could be employed, in accordance with general principles of chemistry (Protective group in organic syntheses, 3rd ed. T. W. Greene, P. G. M. Wuts).
Compounds of formula (Io), here reported again for clarity, including all here above listed, can be usually prepared according to the procedures shown in the schemes below. Where a specific detail or step differs from the general schemes it has been detailed in the specific examples, and/or in additional schemes.
Compounds of formula (Io) can be prepared according to scheme 1. Compound IV is an intermediate where general group r1, r2, r3 and w can be converted into R1, R2 R3 and W respectively by mean of procedures well known to those skilled in the art such as protective groups deprotection or functional group conversion that may involve more than one step. Said procedures can be applied to one or more of those groups (r1, r2, r3 and w) to allow the conversion of intermediate IV into compound of general formula Io and they are detailed in the experimental section for specific examples. It is apparent that in the case such conversions are not needed (when r1, r2, r3 and w correspond to R1, R2 R3 and W respectively), any general approach described below for the preparation of intermediate IV will provide a compound of general formula Io.
Compound of formula Io (or intermediate IV) can be obtained by direct introduction of W through a metal/palladium catalyzed cross coupling reaction such as Suzuki coupling, Stille coupling, Buchwald-Hartwig or similar (Strategic application of named reactions in organic synthesis, L. Kurti, B. Czako, Ed. 2005) by reaction of intermediate TT with intermediate III.
For example, a suitable palladium catalyzed cross coupling for introducing W, when it is an pyrazolo[1,5-a]pyrimidin-3-yl, is a Suzuki coupling. Suzuki coupling can be performed by reacting intermediate II with the corresponding boronic acid or boron pinacolate (intermediate III, where w is pyrazolo[1,5-a]pyrimidin-3-yl and A is dihydroxyboryl or 4,4,5,5-tetramethyl-1,3,2-dioxaborolanyl) in the presence of a Pd catalyst such as tetrakistriphenylphosphinepalladium(0), PdCl2(dppf)2, or a ligand-palladacycle precatalyst such as XPhos-Pd-G3 [(2-Dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate], in an organic solvent such as 1,4-dioxane, THF, 1,2-dimethoxyethane, 2-propanol or DMF, with or without water, in the presence of an inorganic base such as an alkaline carbonate (for example Cs2CO3 or K2CO3) or an inorganic phosphate (for example K3PO4), under heating (typically in the range of 50-100° C.) for few hours (typically 1 to 3 h). Boronic acid and boronic pinacolate esters are generally commercially available or may be readily prepared by those skilled in the art starting from commercially available reagents. For synthetic convenience, primary/secondary amines and phenols that may be present in intermediates of Suzuki coupling need to be protected with suitable protective groups. A suitable protective group for protecting phenolic OH can be benzyl type protective groups such as PMB group (para-methoxybenzyl) or ether type such as MOM (monomethoxymethyl). PMB groups can be easily removed by treating corresponding PMB protected intermediate IV in acidic conditions with an organic or an inorganic strong acid. For example, PMB can be deprotected by treating the intermediates with trifluoroacetic acid neat or in mixture with an organic solvent such as DCM, THE or similar, typically at room temperature for few hours (typically 1 h). A suitable protective group for protecting primary and secondary amines, eventually present in r2/r3 groups, can be carbamate type protective groups such as Boc (tert-butoxycarbonyl). Boc group can be easily removed by treating Boc protected intermediate IV in acidic conditions with an organic or an inorganic strong acid. For example, Boc group can be cleaved by treating the intermediates with trifluoroacetic acid neat or in mixture with an organic solvent such as DCM, DCE, THE or similar, typically at room temperature for few hours (typically 1 to 3 h).
A suitable palladium catalyzed cross coupling for introducing W when it is an imidazo[1,2-b]pyridazin-3-yl, is a Stille coupling that can be performed by reacting intermediate II with the corresponding stannane (intermediate III, where w is imidazo[1,2-b]pyridazin-3-yl and A is tributylstannyl or a trimethylstannyl) in the presence of an appropriate palladium catalyst (such as Pd(PPh3)2Cl2) in a polar organic solvent (for example DMF or 1,4-dioxane with or without additives (like base or lithium salt). Stannanes are generally commercially available or may be readily prepared by those skilled in the art starting from commercially available reagents.
In another approach, W when it is an imidazo[1,2-b]pyridazin-3-yl can be introduced by a direct CH arylation by reacting intermediate II with the corresponding heterocycle (intermediate III, where w is imidazo[1,2-b]pyridazin-3-yl and A is H) in the presence of an appropriate palladium catalyst (such as Pd(Oac)2) and a suitable phosphine (such as PCy3 HBF4 or CyJohnPhos) in a organic solvent (for example DMF, 1,4-dioxane or toluene) with a base (such as Cs2CO3 or K2CO3), with or without carboxilic acid additive (for example pivalic acid) by heating at temperature around 110° C.
A suitable palladium catalyzed cross coupling for introducing W, when it is an (3-oxo-3,4-dihydropyrazin-2-yl)amino, is a Buchwald-Hartwig coupling. For synthetic convenience the carbonyl group of (3-oxo-3,4-dihydropyrazin-2-yl)amino need to be masked as an alkoxy group (such as methoxy group) and removed at the end of the synthesis from intermediate IV. Intermediate II and intermediate III (where w is 3-methoxypyrazin-2-aminyl and A is H) can be reacted to give intermediate IV (where w is 3-methoxypyrazin-2-aminyl) in the presence of a suitable ligand palladacyle system such as RuPhos-Pd-G3 (2-Dicyclohexylphosphino-2′,6′-diisopropoxy-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate) or in general a suitable Pd source (for example Pd2(dba)3 or Pd(OAc)2) with a suitable biphenylphosphine ligand type (RuPhos, X-Phos, or similar), in the presence of a strong organic base such as sodium tert-butoxyde or an inorganic base such as Cs2CO3, in an organic solvent such 1,4-dioxane, THF or toluene, under heating at high temperature (typically 80-120° C.), for few hours (typically 1-5 h). Methoxy group in intermediate IV can be demethylated to give compound of formula Io (where W is (3-oxo-3,4-dihydropyrazin-2-yl)amino) by treatment with TMS-Cl (trimethylsilyl chloride) and sodium iodide in acetonitrile for 1 to 5 h at 60-100° C. The above described process may provide at least one non limiting synthetic route for the preparation of example 1 to 60, example 76, example 85 and 87 to 98 and one non limiting synthetic route for the preparation of intermediate IV, where r1, r2, r3 and/or w are independently precursors of R1, R2, R3 and/or W.
In another approach, compound of formula Io (or intermediate IV) can be prepared by means of a cyclization reaction of intermediate VI with intermediate VII. Cyclization reaction can be performed by heating (typically 60-170° C.) the required reagents in an polar organic solvent such as N-methyl pirrolidone (NMP), dimethylacetamide (DMA) or 1,2-dimethoxyethane (DME) for few hours (typically 1 to 5 h) or longer. Intermediate VI can be prepared from intermediate V and intermediate III through a palladium catalyzed cross coupling using similar conditions to those described above for reaction of intermediate II with intermediate III. This approach provides at least one non limiting synthetic route for the preparation of example 62, 63 and intermediates of formula IV.
In an alternative way, compound of formula Io (or intermediate VI) can be prepared by N-arylation (when r1/R1 is pyridinyl or phenyl) or N-alkylation (when r1/R1 is piperidinyl or benzyl) of intermediate VIII with intermediate IX. An N-arylation can be performed by using copper catalyzed Ullmann type reaction. An Ullmann reaction between a NH heteroaryl and an aryl/heteroaryl halide (chloride, bromide or iodide) can be performed in the presence of a suitable copper(I) catalyst/promoter such as CuI, Cu2O or CuTC (copper thiophene carboxylate), ligandless or with a suitable ligand such as N,N-dimethylglicine, proline or dimethylcyclohexane-1,2-diamine (DMCHA), in the presence of an inorganic base such as K2CO3 or Cs2CO3, by heating (typically 90-150° C.) in a polar organic solvent such as DMSO, DMF or DMA, for few hours or longer (typically 3-12 h). Intermediate VIII can be prepared from cyclization of intermediate V with hydrazine (or a protected derivative) using similar conditions to those described for reaction of intermediate VI with intermediate VII. This alternative process may provide at least one non limiting synthetic route for the preparation of example 61 and intermediates of formula IV.
In another approach, compound of formula Io can be obtained by further elaboration of specific functional groups present in r1, r2, r3 of intermediate IV (prepared according to scheme 1), by means of the functional group transformation reported in table 1 thus providing at least one non limiting synthetic route for the preparation of examples reported into the table.
Preparations of intermediate II are detailed in scheme 2.
Intermediate II can be obtained from cyclization of intermediate V with intermediate VII using similar conditions to those described in scheme 1 for intermediate VI with intermediate VII.
In another approach, intermediate II can be obtained from intermediate X and intermediate IX analogously to what described for N-arylation/N-alkylation of intermediate II and intermediate III. Intermediate X can be obtained from intermediate V by cyclization with hydrazine (or a protected derivative) analogously to what previously described for intermediate VI with intermediate VII in scheme 1.
In another approach, intermediates II can be obtained from further elaboration of r1 and/or r2 and/or r3 groups by general accepted methods and in accordance with principles of chemistry. In the following schemes, the most common transformations that can be used to obtain specific intermediates II have been detailed. For sake of clarity they were labelled with an additional letter index.
Intermediate of formula IIa, when r1 is phenyl and K is —S(O)2NR4R5, can be obtained by further elaboration of an intermediate of formula IIa′ or formula IIa″ as shown in scheme 3.
Intermediate IIa′ can undergo a reaction of sulfonylation by treatment with chlorosulphonic acid and SO2Cl2 at temperature typically from 0° C. to 5° C., for few hours (typically 1-3 h) to give an intermediate sulfonyl chloride. The sulfonyl chloride can be reacted with the corresponding amine H2N—(CH2)n—Z, in the presence of a base such as triethylamnine (TEA) or pyridine, in an organic solvent like DCM or THF, typically at RT for few hours (typically 1 to 3 h). Alternatively, intermediate IIa″ can be activated to give an intermediate sulfonyl chloride by treatment with SO2Cl2 in an organic solvent like DMF, at temperature typically from 0° C. to 5° C., followed by the treatment with a large excess of the corresponding amine H2N—(CH2)n—Z (typically 10 to 30 eq.) to give intermediate IIa.
In another approach showed in scheme 4, intermediate of formula IIb (when r2 is H and r3 is —NH(CH2)nQ or —O(CH2)nQ) can be obtained by displacement of the chlorine by nucleophilic substitution of intermediate IIb′ with the respective amine (H2N—(CH2)n-Q) or alcohol intermediates (HO—(CH2)n-Q). The reaction can be carried out by treating the reagents in an high boiling organic solvent like NMP or DMA by heating at temperature around 150° C. Intermediate IIb when r3 is —NH(CH2)nQ can be alternatively prepared by means of a Pd catalyzed N-arylation under starting from intermediate IIb′ and H2N—(CH2)n-Q, in the presence of a suitable catalytic system like Pd2(dba)3/Xantphos or an alternative suitable Pd source/Buchwald type phosphine and a base like Cs2CO3, in an organic solvent such 1,4-dioxane by heating at temperature around 100° C. for time up to 24 h. In some cases, r3 group of intermediate IIb may been further elaborated by general accepted methods, for example by hydrolyzing esters moieties in acid and then into amides by amide couplings.
In different approach reported in scheme 5, intermediates of formula IIc (when r2 is —CH2CN), intermediate IId (when r2 is —CH2OH) and intermediate IIe (when r2 is —CH2NR4R5) can be prepared in a two step process from intermediate IIc′. In the first step, methyl group of intermediate IIc′ can be selectively brominated by reaction with NBS (N-bromosuccinimide), in the presence of a radical initiator like AIBN (azobisisobutyronitrile) and in a suitable inert organic solvent like tetrachloromethane to give intermediate IIc′. In the second step, nucleophilic substitution of bromine of intermediate IIc′ can give intermediates IIc, IId and IIe by reaction with their corresponding nucleophiles: sodium cyanide, potassium acetate/water and amine HNR6(CH2)n-Q.
In an alternative approach reported in scheme 6, intermediates of formula IIg (when r2 is —C(O)NR6—(CH2)n-Q) may be obtained from intermediate IIf by means of amide coupling with the corresponding amine HNR6—(CH2)n-Q. An amide coupling can be performed by reacting the amine and the acid in an organic solvent like DMF, DCM, or THF, in the presence of a coupling agent like HATU((1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxide hexafluorophosphate), HBTU (0-(Benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate) or COMU ((1-Cyano-2-ethoxy-2-oxoethylidenaminooxy)dimethylamino-morpholino-carbenium) and in the presence of an organic base like TEA, DIEA or pyridine.
Intermediate IIf can be obtained from intermediate IIc′″ by a two step process. In the fist step, intermediate IIc′″ can be hydrolyzed to give the corresponding aldehyde in a mixture of water and a water organic miscible solvent like DMSO or DMF by heating at temperature around 100° C. In the second step, the aldehyde can be oxidized to the corresponding acid with an oxidant like sodium chlorite, in the presence of a inorganic phosphate salt like sodium dihydrogenphosphate, with an additive like 2-methyl-2-butene in a mixture of water and organic solvent such THF. In a different way, intermediate IIf can be obtained from intermediate IId by a two steps oxidation that involves first alcohol oxidation to aldehyde by treatment with DMP (Dess-Martin periodinane), and subsequently oxidation of aldehyde to acid IIf as described above.
Intermediate IIc′″ can be obtained in the same reaction and concomitantly to the synthesis of intermediate IIc″ showed in scheme 5.
In an alternative approach reported in scheme 7, intermediates of formula IIi (when r1 is phenyl and K is —S(CH2)n—Z) and intermediate IIm (when r1 is phenyl and K is —S(O)2(CH2)n—Z) can be obtained from intermediate IIh. Intermediate IIi can be obtained from intermediate IIh by a three step process as follow. In the first step, bromine of intermediate IIh is replaced with S-PG by introducing a suitable protected source of hydrogen sulfide (HS—PG), for example HS-TIPS (triisopropylsilanethiol), by a C—S palladium catalyzed coupling. C—S coupling can be performed by reacting aryl bromide IIh and HS—PG in the presence of a suitable catalytic system like as Pd2(dba)3/Xantphose or another suitable palladium source/phosphine source, in an organic solvent as toluene or DMA, in the presence of a strong base like sodium hydride or sodium terbutoxide, at temperature up to 100° C. TIPS group can be partially deprotected during the palladium catalyzed C—S coupling and/or deprotected by treating the mixture with an acid such as hydrochloric acid to give the corresponding thiophenol derivative of intermediate IIh. In the third step, thiophenol of intermediate IIh can be alkylated by Lg-(CH2)n—Z (Lg is leaving group, for example Cl, Br or tosyl) by reacting those intermediates in the presence of a base such K2CO3 or Cs2CO3 and of sodium iodide as additive, in an organic solvent as acetone or acetonitrile, by heating at reflux temperature. In another settings, when n is 0 and Z is an aryl or heteoaryl, intermediate IIi can be obtained from reaction the corresponding free or TIPS-protected thiophenol with an aryl/heteroaryl halide by a palladium catalyzed C—S coupling as described above. In some cases, intermediate IIi can be directly obtained from intermediate IIh by a palladium catalyzed C—S coupling with HS—(CH2)n—Z.
Intermediate IIm can be obtained from the corresponding intermediates IIi by oxidation of the thioether moiety to sulfone using an oxidant like m-CPBA (meta chloroperbenzoic acid) or another suitable peroxide, in an organic solvent like DCM at temperature around 0° C.
In another approach described in scheme 8, intermediate IIo can be obtained from intermediate IIn with an amide coupling by reacting amine and acid in the same condition to what described for conversion of intermediate IIf into intermediate IIg in scheme 6. Intermediate IIn can be obtained as reported in scheme 2. In an alternative way, intermediate IIn (when R6 is H) can be obtained by Curtious rearrangements of the corresponding carboxylic acid intermediate IIf by reaction with DPPA (diphenyl phosphoryl amide), with a base like TEA or DIPEA, by heating (up to 100-120° C.) in an organic solvent such tert-butanol to give N-Boc protected intermediate IIn (when R6 is H). N-Boc protected intermediate IIn (when R6 is H) can be cleaved to give free amine or used for introducing R6 and then cleaved to give intermediate IIn.
In another approach, intermediate X can be obtained from further elaboration of r2 and/or r3 groups by general accepted methods. In the following schemes (scheme 9 and scheme 10), it were detailed the most common transformations that can be used to obtain intermediates Xa and Xb. groups.
As reported in scheme 9, intermediate Xa can be obtained from intermediate XIa in a three step process. First, for synthetic convenience, heterocyclic NH need to be protected with a suitable protecting group before C—N arylation. THP (tetrahydropyranyl) may be represent a suitable protective group and it can be introduced on intermediate XIa by reaction with dihydropyran in the presence of a sulphonic acid as methanesulfonic acid or p-toluensulfonic acid, in an organic solvent as DCM or THF, at reflux temperatures or lower. In the second step, the C—N arylation of THP protected XIa, can be carried out by using copper catalyzed Ullmann reaction or a palladium catalyzed C—N arylation. Copper catalyzed Ullmann type reaction can be conducted as described in scheme 1 for the reaction of intermediate VIII and intermediate IX. A palladium catalyzed C—N arylation can be carried out similarly to what described for the conversion of intermediate IIb′ to intermediate IIb in scheme 4. In the last step, deprotection of THP group can be carried out by treating corresponding intermediate with an acid like trifluoroacetic acid or hydrochloric acid, in an organic solvent as isopropanol, 1,4-dioxane, DCM or THF with or without a scavenger like triethylsilane.
Intermediate Xb can be obtained from intermediate XIb′ in a two step process that involve nucleophilic substitution of bromine of intermediate XIb′ can be obtained from intermediate XIb in a two step process that involve PG insertion and bromination similarly to what described in scheme 5. A suitable protective group that can be used for protecting NH of intermediate XIb during above mentioned transformation is trityl group. A trityl group can be inserted by reaction of substrate with trityl chloride, in the presence of a hydride such as sodium hydride in an organic solvent as THF or dioxane. Removal of trityl group can be carried out by treating corresponding substrate with an acid such as trifluoroacetic acid, in a solvent as DCM or THF, with or without a scavenger like triethylsilane.
Starting intermediates reported in all above schemes, unless their process for preparation have been detailed here and/or into experimental sections, are commercially available or may be readily prepared by those skilled in the art starting from commercially available reagents using common accepted methods.
Chemical Names of the compounds were generated with Structure To Name Enterprise 10.0 Cambridge Software or latest.
Purification by ‘chromatography’ or ‘flash chromatography’ refers to purification using a Biotage SP1, or Interchim puriFlash purification system, or equivalent MPLC system using a pre-packed polypropylene column containing stationary phase (cartridge).
Where products were purified using an Si cartridge, this refers to an Interchim pre-packed polypropylene column (or equivalent) containing unbounded activated silica with spherical particles with average size of 15 m or Isolute® pre-packed polypropylene column (or equivalent) containing unbounded activated silica with irregular particles with average size of 50 m. When ‘NH-silica’ and ‘C18-silica’ are specified, they refer respectively to aminopropyl chain bonded silica and octadecyl carbon chain (C18)-bonded silica. Fractions containing the required product (identified by TLC and/or LCMS analysis) were pooled and concentrated in vacuo. Where an SCX cartridge was used, ‘SCX cartridge’ refers to a Bond Elut® pre-packed polypropylene column (or equivalent) containing a non-end-capped propylsulphonic acid functionalised silica strong cation exchange sorbent.
Where preparative HPLC-MDAP was used for purification (MDAP-mass directed automatic purification) fractions containing the desired product were pooled and the solvent removed by evaporation or alternatively lyophilised. Wherein MDAP is used, method reference where reported in the description of examples.
NMR spectra were obtained on a Bruker Avance III 600 (5 mm RT inverse probe head), Bruker DRX 500, Bruker Avance AV 400 (5 mm RT direct probehead) or Bruker DPX 300 spectrometers using standard Bruker pulse sequences. DMSO-d6 or CDCl3 were used as solvents and tetramethylsilane as the internal standard unless in the latter case where solvent residual peak was used. All experiments were recorded at 298 K, unless stated differently. Chemical shifts are reported as δ values in ppm relative to tetramethylsilane. Coupling constants (J values) are given in hertz (Hz) and multiplicities are reported using the following abbreviation: s=singlet, d=doublet, t=triplet, q=quartet, m=multiplet, br=broad, nd=not determined.
Acquity UPLC coupled with SQD mass spectrometer; Column: Acquity BEH C18 (50 mm×2.1 mm i.d., 1.7 m), mobile phase A: 0.1% (v/v) formic acid in water, mobile phase B: 0.1% (v/v) formic acid in acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1000 AMU.
Acquity UPLC coupled with SQD mass spectrometer; Column: Acquity BEH C18 (50 mm×2.1 mm i.d., 1.7 m), mobile phase A: 10 mM aqueous solution of ammonium bicarbonate (adjusted to pH 10 with ammonia), mobile phase B: acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1000 AMU.
Acquity UPLC coupled with SQD mass spectrometer; Column: Acquity BEH C18 (50 mm×2.1 mm i.d., 1.7 m), mobile phase A: 0.1% (v/v) formic acid in water, mobile phase B: 0.1% (v/v) formic acid in acetonitrile
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1500 AMU.
Acquity UPLC coupled with SQD mass spectrometer; Column: Acquity BEH C18 (50 mm×2.1 mm i.d., 1.7 m), mobile phase A: 10 mM aqueous solution of ammonium bicarbonate (adjusted to pH 10 with ammonia), mobile phase B: acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1500 AMU.
Acquity UPLC coupled with SQD mass spectrometer; Column: Acquity BEH C18 (50 mm×2.1 mm i.d., 1.7 m), mobile phase A: 0.1% (v/v) formic acid in water, mobile phase B: 0.1% (v/v) formic acid in acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1500 AMU.
Acquity UPLC coupled with SQD mass spectrometer; Column: Acquity BEH C18 (50 mm×2.1 mm i.d., 1.7 m), mobile phase A: 10 mM aqueous solution of ammonium bicarbonate (adjusted to pH 10 with ammonia), mobile phase B: acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1500 AMU.
AGILENT LC 1260 Infinity with SFC and Agilent 6540 UHD Accurate-Mass Q-TOF LC/MS; Column: Acquity BEH C18 (100 mm×2.1 mm i.d., 1.7 m), mobile phase A: 0.1% (v/v) formic acid in water, mobile phase B: 0.1% (v/v) formic acid in acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1500 AMU.
AGILENT LC 1260 Infinity with SFC and Agilent 6540 UHD Accurate-Mass Q-TOF LC/MS; Column: Acquity UPLC BEH C18 (100 mm×2.1 mm i.d., 1.7 m), mobile phase A: 0.05% (v/v) aqueous ammonia, mobile phase B: acetonitrile;
Column temperature: 40° C.; UV detection: from 210 nm to 350 nm; MS conditions: Ionisation Mode: alternate-scan Positive and Negative Electrospray (ES+/ES−), Scan Range: 100 to 1000 AMU.
Agilent 1290 Infinity II Purification System; Column: Waters XBridge® (C18, 100 mm×19 mm i.d., 5 m), mobile phase A: 0.1% (v/v) ammonia in water, mobile phase B: acetonitrile;
Agilent 1290 Infinity II Purification System; Column: Waters XBridge® (C18, 100 mm×19 mm i.d., 5 m), mobile phase A: 0.1% (v/v) ammonia in water, mobile phase B: acetonitrile;
In the procedures that follow, some of the starting materials are identified through an “Intermediate” or “Example” number with indications on step name. This is provided merely for assistance to the skilled chemist. When reference is made to the use of a “similar” or “analogous” procedure, as will be appreciated by those skilled in the art, such a procedure may involve minor variations, for example reaction temperature, reagent/solvent amount, reaction time, work-up or chromatographic purification conditions.
The stereochemistry of the compounds in the Examples, where indicated, has been assigned on the assumption that absolute configuration at resolved stereogenic centres of starting materials is maintained throughout any subsequent reaction conditions.
Unless otherwise stated, where absolute configuration (R) or (S) is reported in the compound name, ee % has to be considered equal or greater than 90%.
All solvents and commercial reagents were used as received. Where the preparation of starting materials is not described, these are commercially available, known in the literature, or readily obtainable by those skilled in the art using standard procedures.
AIBN=Azobisisobutyronitrile; Boc2O=Di-tert-butyl dicarbonate; tBuXPhos=2-di-tert-butylphosphino-2′,4′,6′-triisopropylbiphenyl; aq.=aqueous; DABAL-Me3=Bis(trimethylaluminum)-1,4-diazabicyclo[2.2.2]octane adduct; DAST=Diethylaminosulfur trifluoride; DBU=1,8-Diazabicyclo[5.4.0]undec-7-ene; DCC=Dicyclohexylcarbodiimine; DCE=1,2-Dichloroethane; DCM=Dichloromethane; DIPEA=N,N-Diisopropylethylamine; DMAP=4-dimethylaminopyridine; DMCHDA=trans-N,N′-Dimethylcyclohexane-1,2-diamine; DMF=N,N-Dimethylformamide; DMP=Dess-Martin Periodinane; DMSO=Dimethylsulfoxide; DPPA=diphenyl phosphoryl azide; EEDQ=2-Ethoxy-1-ethoxycarbonyl-1,2-dihydroquinoline; EtOAc=Ethyl acetate; HATU=(1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate), HBTU=(2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate; LCMS=Liquid chromatography-mass spectrometry; LiHMDS=Lithium bis(trimethylsilyl)amide; mCPBA=3-Chloroperbenzoic acid; MW=microwave; NBS=N-Bromosuccinimide; PE=petroleum ether; 1H-NMR=Proton nuclear magnetic resonance; RM=Reaction mixture; Rt=Retention time; RT=Room temperature; RuPhos Pd-G3=(2-dicyclohexylphosphino-2′,6′-di-isopropoxy-1,1′-biphenyl)(2′-amino-1,1′-biphenyl-2-yl)palladium(II) methanesulfonate; sat.=saturated; TEA=Triethylamine; TFA-Trifluoroacetic acid; THF=Tetrahydrofuran; Xphos-Pd-G3-(2-Dicyclohexylphosphino-2′,4′,6′-triisopropyl-1,1′-biphenyl)[2-(2′-amino-1,1′-biphenyl)]palladium(II) methanesulfonate
To a solution of 3-bromo-4-methoxy-benzaldehyde (1.0 g, 4.7 mmol) in anhydrous DCM (10 mL), DAST (1.2 mL, 9.3 mmol) was added dropwise at 0° C., RM warmed up to RT and stirred overnight. RM was quenched at 0° C. by slowly addition of sat. aq. NaHCO3 and extracted with DCM (3×15 mL). Combined organic layers were passed through phase separator and solvent evaporated. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-20% EtOAc in cyclohexane to afford the title product (797 mg).
LCMS (Method 2): Rt=1.14 min
1H-NMR (300 MHz, DMSO-d6) δ: 7.77 (s, 1H), 7.57 (d, J=8.6 Hz, 1H), 7.22 (d, J=8.7 Hz, 1H), 6.96 (t, J=56.4 H7, 1H), 3.89 (s, 3H)
2-Bromo-4-chloro-benzenethiol (100 mg, 0.447 mmol), sodium chlorodifluoroacetate (157 mg, 1.03 mmol) and Cs2CO3 (204 mg, 0.626 mmol) were suspended in DMF (1 mL) and stirred at 100° C. for 2 h. RM was cooled to RT. Water (10 mL) was added and product was extracted with EtOAc (2×15 mL). Combined organic layers were washed with sat. aq. NaHCO3 (3×5 mL), water (5 mL) and sat. aq. NaCl (5 mL). Organic layer was dried over Na2SO4 and evaporated under reduced pressure to afford desired product (160 mg) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.37 min
1H-NMR (300 MHz, CDCl3) δ: 7.69 (d, J=2.3 Hz, 1H), 7.58 (d, J=8.4 Hz, 1H), 7.32 (dd, J=8.4, 2.4 Hz, 1H), 6.85 (t, J=56.3 Hz, 1H)
N-Bromosuccinimide (52.8 mg, 0.3 mmol) was added portionwise to 1-chloro-4-(cyclopropoxy)benzene (40.0 μL, 0.3 mmol) in 1,1,1,3,3,3-hexafluoropropan-2-ol (2.0 mL) and RM stirred at RT overnight. Reaction was quenched with sat. aq. NaHCO3 and extracted with EtOAc (4 times). Combined organic layers were passed through a phase separator and concentrated in vacuo. Crude product was purified by flash chromatography on a Si cartridge by eluting with 0-20% EtOAc in cyclohexane to give the title product (52 mg).
LCMS (Method 1): Rt=1.38 min.
1H-NMR (300 MHz, DMSO-d6) δ: 7.67 (d, J=2.4 Hz, 1H), 7.45 (dd, J=8.7, 2.3. Hz, 1H), 7.39 (dd, J=8.8 Hz, 1H), 3.94-3.97 (m, 1H), 0-80-08.7 (m, 2H), 0.68-0.71 (m, 2H).
To a suspension of 4,6-dichloropyridine-3-carboxylic acid (15.0 g, 78 mmol) in anhydrous DCM (225 mL) cooled at 5° C., DMF (4.5 mL, 59 mmol) was added, followed by dropwise addition of oxalyl chloride (6.6 mL, 78 mmol). RM was stirred for 20 h reaching RT, then solvents were removed under reduced pressure and the residue azeotroped with toluene (20 mL). The residue was taken in DCM (40 mL) and added dropwise to a mixture of N,O-Dimethylhydroxylamine hydrochloride (11 g, 117 mmol) in DCM (100 mL) and TEA (10.8 mL, 78 mmol) at 5° C. RM was stirred overnight at RT, quenched with sat. aq. NaHCO3 (70 mL) and organic layer washed with water (3×25 mL), dried over Na2SO4 and solvent removed under reduced pressure to afford the title product (16.1 g) that was used in the next synthetic steps without further purification.
LCMS (Method 1): Rt=0.82 min
1H-NMR (300 MHz, CDCl3) δ: 8.34 (s, 1H), 7.42 (s, 1H), 3.47 (s, 3H), 3.36 (s, 3H)
To a mixture of intermediate 4-1 (25 g, 105 mmol) and THE (150 mL) at 0-5° C., MeMgBr (3.0M in diethyl ether, 79 mL, 238 mmol) was added dropwise over 1 h and RM stirred for further 1 h. RM was quenched with sat. aq. NH4Cl (100 mL) and stirred for 10 min. The aqueous layer was extracted with EtOAc (100 mL), washed with water (100 mL), sat. aq. NaCl (100 mL), dried over Na2SO4 and evaporated under reduced pressure. The residue was purified by bulb-to-bulb distillation (91° C./2×10−1 mbar) to afford desired product (15.8 g).
LCMS (Method 2): Rt=0.89 min
1H-NMR (600 MHz, CDCl3) δ: 8.59 (s, 1H), 7.42 (s, 1H), 2.66 (s, 3H)
Intermediate 4 (5.00 g, 26.3 mmol) was dissolved in 1,2-Dimethoxyethane (35 mL) under argon, then added with Pd(PPh3)4 (608 mg, 0.526 mmol). After 10 min, 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (6.45 mg, 26.3 mmol) in 2-propanol (35 mL) and 2M aq. K2CO3 (23.7 mL, 47.4 mmol) were added and RM stirred at 95° C. for 1 h. RM was cooled to RT, diluted with water (120 mL), and the formed precipitate collected by filtration, washed with acetonitrile (2×50 mL) and dried at 45° C. for 1 h to afford the title compound (5 g) that was used in the next steps without further purification.
LCMS (Method 2): Rt=0.89 min, ES+ m/z 272.9/274.9 [M+H]+
Intermediate 5 (500 mg, 1.83 mmol) in NMP (10 mL) and hydrazine monohydrochloride (126 mg, 1.83 mmol) were heated at 100° C. overnight. After cooling to RT, RM was quenched with sat. aq. NaHCO3 and extracted with EtOAc (4×15 mL). Combined organic layers were washed with sat. aq. NaCl (5×20 mL), dried over Na2SO4 and concentrated in vacuo. The crude material was triturated with DCM to afford the desired product (167 mg).
LCMS (Method 2): Rt=0.64 min, ES+ m/z 251.0 [M+H]+
4-Bromo-2-nitro-phenol (22 g, 14 mmol), chlorodifluoroacetic acid sodium salt (35 g, 232 mmol) and Cs2CO3 (46 g, 141 mmol) were suspended in DMF/water (250/25 mL) and stirred at 100° C. for 1.5 h. RM was concentrated in vacuo, diluted with water (200 mL) and extracted with EtOAc (2×200 mL). Combined organic layers were washed with sat. aq. NaHCO3 (3×150 mL), sat. aq. NaCl (150 mL), dried over Na2SO4 and evaporated under reduced pressure to afford the title product (25.9 g) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.14 min
1H-NMR (400 MHz, CDCl3) δ: 8.04 (d, J=2.4 Hz, 1H), 7.71 (dd, J=8.8, 2.5 Hz, 1H), 7.28 (dt, J=8.8, 1.0 Hz, 1H), 6.58 (t, J=73 Hz, 1H)
Intermediate 7a-1 (25.9 g, 96.6 mmol) was dissolved in acetic acid (200 mL), then iron (8.10 g, 145 mmol) was added portionwise and RM stirred at 90° C. for 3 h. After cooling to RT, RM was diluted with DCM (700 mL) and washed with sat. aq. NaHCO3 (2×800 mL). Organic layer was filtered through a bed of diacetomatous earth, washed with sat. aq. NaCl (400 mL), dried over Na2SO4 and evaporated under reduced pressure. The crude material was dissolved in DCM (400 mL), washed with aq. 10% w/w Na2CO3 (3×200 mL), dried over Na2SO4, and evaporated under reduced pressure. The residue was purified by distillation (60° C./5.9×10−2 mbar) to give the title product (15.5 g).
LCMS (Method 2): Rt=1.05 min
1H-NMR (400 MHz, CDCl3) δ: 6.92-6.85 (m, 2H), 6.79 (dd, J=8.5, 2.5 Hz, 1H), 6.41 (t, J=73.0 Hz, 1H), 3.97 (br s, 2H)
Intermediate 7a-1 (2.81 g, 11.0 mmol) in dry toluene (45 mL) was added with sodium thiomethoxide (2.06 g, 29 mmol) and RM degassed prior to the addition of Xantphos Pd-G3 (498 mg, 0.53 mmol). RM was stirred at 85° C. overnight. After cooling to RT, RM was diluted with EtOAc (200 mL) and washed with sat. aq. NaCl (2×100 mL) and water (3×100 mL). The organic layer was dried over Na2SO4, solvent removed under reduced pressure, and the residue purified by flash chromatography on Si cartridge by eluting with 0-10% EtOAc in PE to afford the title product (471 mg).
LCMS (Method 2): Rt=1.15 min
1H-NMR (300 MHz, CDCl3) δ: 7.70 (d, J=2.5 Hz, 1H), 7.42 (dd, J=8.7, 2.5 Hz, 1H), 7.29 (dt, J=8.7, 1.0 Hz, 1H), 6.56 (t, J=73.1 Hz, 1H), 2.52 (s, 1H)
Intermediate 7b was prepared in a similar manner to intermediate 7a (step 2) starting from intermediate 7b-1.
LCMS (Method 2): Rt=1.00 min
1H-NMR (300 MHz, CDCl3) δ: 6.93 (d, J=8.7 Hz, 1H), 6.66 (d, J=2.3 Hz, 1H), 6.58 (dd, J=8.6, 2.3 Hz, 1H), 6.40 (t, J=74.1 Hz, 1H), 3.84 (bs, 2H), 2.42 (s, 1H)
To a solution of conc. HCl (aq. 37% w/w, 45 mL) at 0° C., 5-chloro-2-(difluoromethoxy)aniline (12.8 g, 66.1 mmol) was added dropwise under vigorous stirring (keeping the temperature <5° C.), then followed by a solution of NaNO2 (5.93 g, 86.0 mmol) in water (45 mL). RM was stirred at 0° C. for 90 min, followed by a dropwise addition of a solution of tin (II) chloride (37.6 g, 198 mmol) in conc. HCl (aq. 37% w/w, 45 mL) keeping the temperature <5° C. RM was stirred overnight at 4° C. RM was diluted with sat. aq. NaCl (100 mL), pH adjusted to 10 using aq. 20% w/w NaOH, and filtered through pad of diacemateous earth, followed by washings with water (2×100 mL) and DCM (6×100 mL). Organic layer was separated, washed with water (200 mL), dried over Na2SO4 and solvent removed under reduced pressure affording the first crop of crude product. A second crop of crude product was obtained by further washing of diacematateous earth pad with DCM. Combined crops were dissolved in 1,4-dioxane (100 mL) and treated with 4N HCl in 1,4-dioxane (9.64 mL, 38.53 mmol) at RT for 30 min to form a precipitate that was collected by filtration, washed with 1,4-dioxane and dried to give the title compound (13 g) that was used in the next steps without further purification.
LCMS (Method 2): Rt=0.95 min, ES− m/z 207.0/209.0 [M−H]−
The following intermediates were prepared in a similar manner to intermediate 8a from the indicated starting materials.
To a mixture of 3-bromo-4-methoxy-benzenesulfonyl chloride (3 g, 10.5 mmol) in 1,4-dioxane (6 mL), water was added (6 mL) and RM refluxed for 3 h. RM was evaporated to dryness to afford the title product (2.8 g) that was used in the next steps without further purification.
LCMS (Method 1): Rt=0.52 min, ES− m/z 264.7/266.7[M−H]−
Copper(I)iodide (1.13 g, 6.0 mmol), N,N-Dimethylglycine (1.23 g, 12 mmol), K2CO3 (1.65 g, 12 mmol), intermediate 9-1 (2.8 g, 10 mmol) and 6-chloro-3-methyl-1H-pyrazolo[4,3-c]pyridine (1 g, 6 mmol) in DMSO (15 mL) were stirred at 100° C. overnight under argon. After cooling to RT, RM was diluted with aq. 1M HCl (15 mL) and filtrate to remove undissolved solids. Aqueous extract was washed with DCM (3×15 mL) and then freeze dried. The lyophilized residue was purified by flash chromatography on C18 silica by gradient eluition from 5 to 99% acetonitrile in water (+0.1% v/v HCOOH) to afford the desired product (480 mg).
LCMS (Method 1): Rt=0.63 min, ES+ m/z 353.9/355.8 [M+H]+
Copper(I)iodide (511 mg, 2.69 mmol), N,N-dimethylglycine (554 mg, 5.37 mmol), K2CO3 (1.48 mg, 10.7 mmol), 1-bromo-2-methoxy-benzene (2 mL, 16.1 mmol) and 6-chloro-3-methyl-1H-pyrazolo[4,3-c]pyridine (900 mg, 5.37 mmol) in DMSO (20 mL) were stirred at 100° C. overnight under argon. After cooling to RT, RM was diluted with EtOAc (100 mL), washed with 15% w/w aq. ammonia (3×100 mL) and sat. aq. NaCl (5×50 mL). Combined organic layers were dried over Na2SO4, concentrated in vacuo, and the residue purified by flash chromatography on a Si cartridge by eluting with 0-15% EtOAc in DCM to afford the desired compound (950 mg).
LCMS (Method 2): Rt=1.09 min, ES+ m/z 273.9/275.7[M+H]+
Intermediate 10-1 (500 mg, 1.8 mmol) was cooled in an ice bath, then ClSO3H (2.8 mL, 42 mmol) was slowly added under argon. RM was stirred for 1 h at 0-5° C., added with SOCl2 (0.56 mL, 7.6 mmol) and stirred for further 1 h. After quenching RM in a water/ice mixture, the precipitate formed was collected by filtration, washed with ice cold water and dried to afford the title product (620 mg) that was used in the next steps without further purification.
LCMS (Method 1): Rt=1.18 min, ES+ m/z 371.4/373.6/375.5 [M+H]+.
3-bromo-4-methoxy-benzenesulfonyl chloride (500 mg, 1.75 mmol), Na2SO3 (441 mg, 3.50 mmol) and NaHCO3 (294 mg, 3.50 mmol) in water (3.75 mL) were stirred at RT for 1.5 h. Tetrabutylammonium bromide (35.0 mg, 0.109 mmol) and 3-bromotetrahydrofuran-2-one (321 μL, 3.50 mmol) were added. RM was stirred at 70° C. for 1.5 h and then partitioned between DCM and water. Organic layer was dried over Na2SO4 and concentrate under reduced pressure. The residue was chromatographed on silica by eluting with EtOAc/hexanes (1:1) to afford the title product (160 mg).
LCMS (Method 2): Rt=0.91 min, ES− m/z=333.1/335.1 [M−H]−
Title compound was prepared on a similar manner to intermediate 11a starting from 3-bromo-4-methoxy-benzenesulfonyl chloride and 1-iodopropane.
LCMS (Method 2): Rt=1.03 min
1H-NMR (300 MHz, CDCl3) δ: 8.05 (d, J=2.3 Hz, 1H), 7.81 (dd, J=8.5, 2.3 Hz, 1H), 6.99 (d, J=8.6 Hz, 1H), 3.96 (s, 3H), 3.00-3.05 (m, 2H), 1.66-1.79 (m, 2H), 0.98 (t, J=7.1 Hz, 3H)
The title compound was prepared on a similar manner to intermediate 11a starting from 3-bromo-4-methoxy-benzenesulfonyl chloride and iodomethane.
LCMS (Method 2): Rt=0.86 min
1H-NMR (300 MHz, DMSO-d6) δ: 8.07 (d, J=2.2 Hz, 1H), 7.90 (dd, J=8.7, 2.2 Hz, 1H), 7.33 (d, J=8.7 Hz, 1H), 3.99 (s, 3H), 3.21 (s, 3H)
4-bromo-2-iodo-phenol (5.00 g, 16.7 mmol), sodium chlorodifluoroacetate (5.87 g, 38.5 mmol) and Cs2CO3 (7.63 mg, 23.4 mmol) in DMF (25 mL) were stirred at 100° C. for 2 h. After cooling to RT, RM was poured into water (250 mL) and filtered. Filtrate was extracted with EtOAc (2×50 mL). Combined organic layers were washed with sat. aq. NaHCO3 (3×40 mL), water (40 mL), sat. aq. NaCl (40 mL), dried over MgSO4 and solvent evaporated under reduced pressure to give the desired product (4.50 g) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.31 min
1H-NMR (300 MHz, CDCl3) δ: 7.96 (d, J=2.3 Hz, 1H), 7.44 (dd, J=8.7, 2.4 Hz, 1H), 7.02 (d, J=8.7 Hz, 1H), 6.48 (t, J=73.0 Hz, 1H)
To a mixture of 2-fluoro-5-methoxy-phenol (400 mg, 2.81 mmol) in hexafluoro-isopropanol (11.3 mL), NBS (501 mg, 2.81 mmol) was added and RM stirred at RT for 1 h. RM was quenched with sat. aq. NaHCO3 and extracted with EtOAc. Organic layer was washed with sat. aq. NaHCO3 (3×15 mL), sat. aq. NaCl, dried over Na2SO4 and evaporated under reduced pressure to give the title product (28 mg) that was used in the next synthetic step without further purification.
LCMS (Method 1): Rt=0.92 min, ES− 219.0/221.1 [M−H]−
To a mixture of intermediate 13a-1 (724 mg, 3.28 mmol) in DMF (6.3 mL) at 0° C., PMB-Cl (577 μL, 4.26 mmol) and anhydrous K2CO3 (1.36 g, 9.83 mmol) were added. RM was stirred 0° C. at for 1 h and at RT overnight. RM was diluted with EtOAc (25 mL), washed with sat. aq. NaHCO3 (3×15 mL) and sat. aq. NaCl (15 mL). Organic layer was dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-10% EtOAc in cyclohexane to give the title product (567 mg).
LCMS (Method 2): Rt=1.35 min
1H-NMR (300 MHz, CDCl3) δ: 7.32 (m, 2H), 7.25 (d, J=10.2 Hz, 1H), 6.89 (m, 2H), 6.56 (d, J=7.1 Hz, 1H), 5.06 (s, 2H), 3.80 (s, 3H), 3.78 (s, 3H)
The following intermediates were prepared in a similar manner to intermediate 13a from the indicated starting materials.
1H-NMR
A solution of 4-bromo-3-methoxyphenol (160 mg, 0.67 mmol) in DMF (400 l) was added to a suspension of NaH (60% mineral oil dispersion, 48.2 mg, 1.21 mmol) in DMF (1.2 mL) at 0° C. RM was stirred for 30 min followed by addition of chloro(methoxy) methane (91.0 μl, 1.14 mmol). RM was stirred for 2 h at RT, then quenched with water (10 mL) and extracted with diethyl ether (10 mL). Organic layer was washed with sat. aq. NaCl (2×10 mL), dried over MgSO4 and concentrated under reduced pressure. The residue was purified by flash chromatography on Si cartridge by eluting with 0-50% EtOAc in cyclohexane to afford the title product. (202 mg).
LCMS (Method 2): Rt=1.14 min
1H-NMR (300 MHz, CDCl3) δ: 7.38 (d, J=9.0 Hz, 1H), 6.60 (d, J=2.7 Hz, 1H), 6.54 (dd, J=8.7, 2.7 Hz, 1H), 5.14 (s, 2H), 3.85 (s, 3H), 3.46 (s, 1H).
Dihydropyran (3.4 mL, 37.4 mmol) and methanesulfonic acid (0.16 mL, 2.5 mmol) were added to 6-chloro-3-iodo-1H-pyrazolo[4,3-c]pyridine (3.48 g, 11.1 mmol) in DCM (33 mL) and THE (16.6 mL). RM was stirred at 40° C. for 2 h, then at RT overnight. Solvents were evaporated and the residue purified by flash chromatography on a Si cartridge by eluting with 0-100% of EtOAc in cyclohexane to afford the title product (1.48 g).
LCMS (Method 2): Rt=1.18 min, ES+ m/z 364.0/366.0 [M+H]+
Sodium hydride (60.0% disperssion in mineral oil, 1.00 g, 25.0 mmol) was added portionwise to 6-chloro-3-methyl-1H-pyrazolo[4,3-c]pyridine (2.50 g, 14.9 mmol) in dry THE (50.0 mL). RM was stirred at 0° C. for 1 h, then and trityl chloride (5.10 g, 18.3 mmol) added portionwise and RM stirred overnight at RT. RM was quenched at 0-5° C. with sat. aq. NH4Cl, and THE removed under reduced pressure. The remaining mixture was extracted with EtOAc (3×). Combined organic layers were concentrated and the formed precipitate collected by filtration, washed with EtOAc and dried to afford the title product (3.77 g).
LCMS (Method 2): Rt=1.51, ES+ m/z 410.2/421.1 [M+H]+
L-proline (85.5 mg, 0.74 mmol) and copper(I)iodide (94.3 mg, 0.5 mmol) were added to a mixture of intermediate 15 (900 mg, 2.48 mmol), N′,N′-dimethylethane-1,2-diamine (1.23 mL, 11.3 mmol), K2CO3 (2.05 g, 14.9 mmol) in DMF (8.0 mL) and RM stirred at 110° C. for 2 h under argon atmosphere. After cooling to RT, RM was diluted with water (80 mL) and extracted with EtOAc (3×10 mL). Combined organic layers were washed with sat. aq. NaHCO3, passed through phase separator and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:9:0.5) in DCM To give title compound (630 mg).
LCMS (Method 1): Rt=0.62 min, ES+ m/z 323.9/325.9 [M+H]+
Triethylsilane (932 μL, 5.84 mmol) was added dropwise to intermediate 17a-1 (630 mg, 1.95 mmol) in DCM (9 mL)/TFA (2.29 mL, 29.9 mmol). RM was stirred at RT for 1 h, then diluted with DCM and extracted with sat. aq. NaHCO3 (10 mL). Aqueous layer (adjusted at pH 9.6) was further extracted with EtOAc (3×), followed by DCM/iPrOH (1:1). Combined organic layers were passed through a phase separator and evaporated under reduced pressure to afford the title product (396 mg) that was used in the next steps without further purification.
LCMS (Method 1): Rt=0.39 min, ES+ m/z 240.0/242.0 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 17a from the indicated starting materials that replace N′,N′-dimethylethane-1,2-diamine in step 1.
Intermediate 15 (150 mg, 0.41 mmol), 1-piperazin-1-ylethanone (63.5 mg, 0.495 mmol), Xanthphos (23.9 mg, 0.04 mmol), Pd2(dba)3 (11.9 mg, 0.02 mmol), Cs2CO3 (269 mg, 0.83 mmol) in 1,4-Dioxane (2.7 mL) were heated at 90° C. for 16 h under nitrogen atmosphere. After cooling to RT, RM was diluted with water (10 mL) and extracted with EtOAc (3×10 mL). Combined organic layers were washed with sat. aq. NaCl (10 mL), dried over anhydrous MgSO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-50% DCM/MeOH (20:1) in DCM to afford the title product (105.3 mg).
LCMS (Method 2): Rt=0.94 min, ES+ m/z 364.2/366.2 [M+H]+
HCl (4M in 1,4-dioxane, 3.7 mL, 14.9 mmol) was added dropwise to a mixture of intermediate 17e-1 (140 mg, 0.331 mmol) in isopropanol (3.7 mL). RM was stirred at RT for 2 h, then partitioned between water (pH adjusted to 8) and DCM (30 mL). Aqueous layer was further extracted with DCM (2×15 mL) and combined organic layers were dried over MgSO4, filtered and evaporated under reduced pressure. The residue was purified by flash chromatography on a 4 cartridge by eluting with 0-50% DCM/MeOH (10:1) in DCM to afford the title product (65.9 mg)
LCMS (Method 2): Rt=0.61 min, ES+ m/z 280.1/282.1 [M+H]+
Title product was obtained on a similar manner to intermediate 17e-1 starting from intermediate 15 and azetidin-3-ylmethanol hydrochloride.
LCMS (Method 2): Rt=0.84 min, ES+ m/z 323.1/325.1 [M+H]+
Title product was obtained in a similar manner to intermediate 17a (step 2) starting from intermediate 17f-1.
LCMS (Method 2): Rt=0.53 min ES+ m/z 239.1/240.1 [M+H]+
Copper (I) iodide (170 mg, 0.89 mmol), N,N-Dimethylglycine (185 mg, 1.79 mmol), K2CO3 (495 mg, 3.58 mmol), 2-bromo-4-fluoro-1-methoxy-benzene (697 μL, 5.4 mmol) and 6-chloro-3-methyl-1H-pyrazolo[4,3-c]pyridine (300 mg, 1.8 mmol) in DMSO (3 mL) were stirred at 100° C. overnight under argon atmosphere. RM was diluted with EtOAc (15 mL) and washed with 15% aq. ammonia (3×15 mL) and sat. aq. NaCl (10 mL). The organic layer was dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-40% EtOAc in cyclohexane to give the desired product (380 mg).
LCMS (Method 2): Rt=1.10 min, ES+ m/z 292.0/293.9 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 18a from the indicated starting materials. When minor modifications on base, solvent, temperature, reaction time, ligand and/or copper were made, they were detailed below in brackets
Intermediate 4 (500 mg, 2.6 mmol), intermediate 8a (680 mg, 2.8 mmol) and NMP (3 mL) were stirred at 60° C. for 1 h and at 120° C. for 5 h. After cooling to RT, RM was poured in water (20 mL) and stirred for 10 min. The precipitate formed was collected by filtration, washed with water and purified by flash chromatography on a Si cartridge by eluting with 0-24% EtOAc in cyclohexane to afford the title product (242 mg).
LCMS (Method 2): Rt=1.25 min, ES+ m/z 344.1/346.1/348.1 [M+H]+
From the flash chromatography purification, a second pure product was obtained. LC-MS analysis confirmed the structure of des-methyl of intermediate 18z and it was identified as Intermediate 18aa
LCMS (Method 2): Rt=0.65 min, ES+ m/z 294.1/296.1/298.1 [M+H]+
Intermediate 4 (180 mg, 0.95 mmol) and intermediate 8d (243 mg, 0.95 mmol) in NMP (2 mL) were stirred at RT overnight and then at 170° C. under microwave irradiation for 1 h. After cooling to RT, RM was diluted with water (15 mL) and extracted with EtOAc (2×10 mL). Combined organic layers were washed with water (5×15 mL), dried over Na2SO4 and solvent removed in vacuo. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-8% EtOAc in cyclohexane to afford the title product (144 mg).
LCMS (Method 2): Rt=1.26 min, ES+ m/z 356.2/358.1 [M+H]+
2,4,6-trichloropyridine-3-carbaldehyde (2 g, 9.5 mmol) and intermediate 8e (1.99 g, 9.0 mmol) in NMP (12 mL) were stirred at RT for 30 min and then at 150° C. under MW irradiation for 7.5 h. After cooling to RT, RM was partitioned between EtOAc (200 mL) and water (200 mL), then aqueous layer further extracted with EtOAc (150 mL). Combined organic layers were washed with water (150 mL), sat. aq. NaCl (150 mL), dried over MgSO4 and evaporated under reduced pressure to give the title compound (2.6 g) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.26 min, ES− m/z 312.0/314.0/316.0 [M−H]−
K2CO3 (2.28 g, 17 mmol) and iodomethane (772 μL, 12 mmol) were added to a mixture of intermediate 18ac-1 (2.6 g, 8.3 mmol) in DMF (6 mL). RM was stirred at RT for nearly 2 h, the diluted with EtOAc (20 mL) and washed with sat. aq. NaHCO3 (2×20 mL). Organic layer was washed with sat. aq. NaCl and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-50% cyclohexane:DCM (3:1) in cyclohexane to afford the title product (167 mg).
LCMS (Method 2): Rt=1.38 min
1H-NMR (300 MHz, CDCl3) δ: 8.30 (d, J=0.9 Hz, 1H), 7.46 (s, 1H), 7.44 (dd, J=9.3, 2.3 Hz, 1H), 7.09 (d, J=0.9 Hz. 1H), 7.02-7.06 (m, 1H), 3.81 (s, 3H).
To a cooled mixture (in an ice bath) of intermediate 9 (70 mg, 0.20 mmol) in dry DMF (0.5 mL), SOCl2 (58 μL, 0.79 mmol) was added and RM stirred at 0-5° C. for 30 min, followed by dropwise addition of methylamine (2.0M in THF, 2.0 mL, 4.0 mmol). RM was stirred for further 10 min, then diluted with EtOAc (15 mL), washed with sat. aq. NaHCO3 (3×10 mL) and sat. aq. NaCl (10 mL). Organic layer was dried over Na2SO4 and evaporated to dryness. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-40% EtOAc in DCM to afford the title product (40 mg).
LCMS (Method 1): Rt=0.91 min, ES+ m/z 367.0/369.0 [M+H]+.
Title product was prepared on a similar manner to intermediate 18ad starting from intermediate 9, ethanolamine and 1 equivalent of TEA.
LCMS (Method 1): Rt=0.81 min, ES+ m/z 397.0/398.9 [M+H]+.
Intermediate 10 (50 mg, 0.13 mmol) and TEA (56 μL, 0.4 mmol) were added to a solution of 3-(4-methylpiperazin-1-yl)propan-1-amine (22 μL, 0.13 mmol) in dry DCM (1 mL) and RM stirred at RT for 1 h. RM was diluted with EtOAc (10 mL) and washed with sat. aq. NaHCO3 (3×5 mL) and sat. aq. NaCl (5 mL). Organic layer was dried over Na2SO4 and evaporated to dryness. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-90% DCM/MeOH/NH4OH (90:9:0.5) in DCM to afford the title product (45 mg).
LCMS (Method 2): Rt=0.86 min, ES+ m/z 493.1/495.0 [MM+H]+
The following intermediates were prepared in a similar manner to Intermediate 18af from the indicated starting materials. When minor modifications on base, solvent, and/or temperature were made, they were detailed below in brackets
To a mixture of intermediate 18r (46 mg, 0.14 mmol) in MeOH (2.8 mL)/THF (2 mL), aq. formaldehyde (37%, 53 μL, 0.71 mmol), acetic acid (4 μL, 0.07 mmol) and Na(CN)BH3 (18 mg, 0.28) were added and RM stirred at RT overnight. Further 1 equivalent of Na(CN)BH3, formaldehyde and acetic acid were added and stirring proceed at 40° C. for further 6 hours. RM was diluted with water and extracted with EtOAc. Organic layer was washed with sat. aq. NaCl and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-10% MeOH in EtOAc To afford the title product (42.6 mg).
LCMS (Method 2): Rt=1.26 min, ES+ m/z 337.1/339.1 [M+H]+
Title product was prepared on a similar manner to intermediate 18a starting from intermediate 17b and intermediate 12.
LCMS (Method 2): Rt=1.34, ES+ m/z 474.1/476.1/478.1 [M+H]+
Intermediate 18ak-1 (43 mg, 0.09 mmol), sodium thiomethoxide (19 mg, 0.27 mmol), Pd2(dba)3 (7.8 mg, 8.6 μmol), Xantphos (10 mg, 18 μmol) and degassed toluene (1 mL) were stirred at 80° C. under nitrogen. After 3 h, a second equivalent of Pd2(dba)3 (7.8 mg) and Xantphos (10 mg) were added and stirring continued at 80° C. for further 3 h. RM was allowed to cool to RT and formed precipitate filtered off. Filtrate was diluted with EtOAc (10 mL), washed with sat. NaHCO3 (10 mL) and sat. aq. NaCl (10 mL). Organic layer was evaporated under reduced pressure and the residue purified on a 4 g Si cartridge by eluting with 0-100%, DCM/MeOH/NH4OH (90:5:0.5) in DCM to afford the title product (27 mg).
LCMS (Method 2): Rt=1.38, ES+ m/z 442.2/444.2 [M+H]+
To a suspension of intermediate 18s (35 mg, 0.071 mmol) in methanol (1.7 mL), HCl (4.0M in 1,4-dioxane, 1.7 mL, 6.8 mmol) was added dropwise and RM stirred at 60° C. for 2 h. RM was partitioned between water and DCM (30 mL) and aqueous layer (after adjusting pH to 10.5) further extracted with DCM (2×15 mL). Combined organic layers were dried over MgSO4 and evaporated to dryness. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-80% DCM/MeOH (10:1) in DCM to afford the title product (6.6 mg).
LCMS (Method 2): Rt=1.09, ES+ m/z 378.2/380.2 [M+H]+
Intermediate 181 (35.0 mg, 0.113 mmol) was dissolved in acetic anhydride (1 mL) and stirred at RT for 4 h. RM was poured on ice cold water (10 mL), pH adjusted to 7 with sat.aq. NaHCO3 and extracted with EtOAc. Combined organic layers were washed with sat. aq. NaHCO3 (2×3 mL), dried over Na2SO4 and concentrated. The residue was purified by flash chromatography on a Si cartridge by eluting with EtOAc/MeOH (9:1) to afford the desired product (29 mg).
LCMS (Method 2): Rt=1.01, ES+ m/z 351.0/353.0 [M+H]+
To a solution of intermediate 18× (10.0 mg, 30 μmol) in MeOH (0.25 mL) was added 2M aq. HCl (127 μL, 255 μmol) at RT, then RM stirred for 1 h at 60° C. RM of two parallel reactions made on the same scale were combined, cooled to RT, diluted with sat. aq. NH4Cl (2 mL) and stirred for 30 min prior to be extracted with DCM (4×5 mL). Combined organic layers were passed through a phase separator and solvent removed under reduced pressure to afford the title product (10 mg) that was used in the next synthetic step without further purification.
LCMS (Method 2): Rt=0.63, ES+ m/z 290.1/292.1 [M+H]+
NBS (2.06 g, 12 mmol) and AIBN (317 mg, 1.9 mmol) were added to a mixture of intermediate 18z (3.2 g, 9.65 mmol) in tetrachloromethane (45 mL) and refluxed for 3 h under nitrogen. A second equivalent of NBS (2.06 g, 12 mmol) and AIBN (317 mg, 1.9 mmol) was added and stirring proceeded overnight. After cooling to RT, formed solids were filtered-off and washed with tetrachloromethane. Combined organic layers were washed with sat. aq. NaCl (80 mL), dried over Na2SO4 and evaporated under reduced pressure. The crude product was purified by flash cromatography on a Si cartridge by eluting with 0-100% DCM in cyclohexane to afford the title compound (550 mg).
LCMS (Method 2): Rt=1.35, ES+ m/z 422.0/424.0/426.0 [M+H]+
From the flash chromatography purification, a second pure product was obtained. LC-MS analysis confirmed the structure of dibromoderivative of intermediate 18z and it was identified as Intermediate 21.
LCMS (Method 2): Rt=1.47, ES+ ion cluster with major peaks m/z 501.8 and 503.8 [M+H]+
To a mixture of intermediate 20 (2.0 g, 4.7 mmol) and ethanol (45 mL), sodium cyanide (278 mg, 5.7 mmol) in water (4 mL) was added and RM stirred at 80° C. overnight. After cooling to RT, RM was diluted with sat. aq. NaCl (40 mL) and extracted twice with EtOAc (40+20 mL). Combined organic layers were washed with sat. aq. NaCl (20 mL), dried over MgSO4 and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-30% EtOAc in cyclohexane to afford the title compound (300 mg).
LCMS (Method 1): Rt=1.18, ES+ m/z 369.9/372.0 [M+H]+
To a mixture of intermediate 20 (780 mg) in DMF (4 mL), potassium acetate (353 mg, 3.6 mmol) was added and RM stirred at 60° C. for 2 h. After cooling to RT, RM was diluted with water (20 mL) and extracted with EtOAc (3×10 mL). Combined organic layers were washed with water (2×10 mL), sat. aq. NaCl (2×10 mL), dried over Na2SO4 and solvent removed under reduced pressure. The residue was dissolved in a mixture of methanol (5 mL) and water (1 mL), added with potassium carbonate (498 mg, 3.6 mmol) and stirred at RT. Volatile solvents were removed under reduced pressure, the residue was dissolved in EtOAc (30 mL), washed with water (2×15 mL) and sat. aq. NaCl (15 mL). Organic layer was dried over Na2SO4, solvent removed under reduced pressure and the residue purified by flash chromatography on a Si cartridge by eluting with 0-10%, DCM/MeOH/NH4OH (90:5:0.5) in DCM to afford the title product (184 mg).
LCMS (Method 2): Rt=1.04, ES+ m/z 360.1/362.1/362.1 [M+H]+
Intermediate 21 (1.67 g, 3.3 mmol) in DMSO (10 mL)/water (1.0 mL) was heated at 100° C. for 5 h and at 120° C. for 3 h. After cooling to RT, RM was diluted with water (50 mL) and extracted with EtOAc (2×20 mL). Combined organic layers were washed with water (4×15 mL), sat. aq. NaCl (20 mL), dried over Na2SO4 and solvent removed under reduced pressure to give the title product (1.08 g) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.24, ES+ m/z 358.1/360.1 [M+H]+
To a mixture of intermediate 23b (104 mg, 0.29 mmol) and THE (5 mL), NaClO2 (263 mg, 2.9 mmol), a solution of NaH2PO4 (348 mg, 2.9 mmol) in water (0.8 mL) and 2-methyl-2-butene (1.38 mL, 13 mmol) were added and RM stirred to 40° C. for 1.5 h. After cooling to RT, RM was diluted with water (10 mL), acidified with aq. 1N HCl to pH 2.5, and extracted with DCM (2×10 mL). Combined organic layers were washed with sat. aq. NaCl (10 mL), dried over Na2SO4 and solvent removed under reduced pressure to give the desired product (90 mg) that was used in the next steps without further purification.
LCMS (Method 2): Rt=0.59, ES+ m/z 374.1/376.1 [M+H]+
Copper(I)thiophene-2-carboxylate (434 mg, 2.28 mmol), Cs2CO3 (2.22 g, 6.83 mmol), 2-bromo-4-chloro-1-methoxy-benzene (970 μl, 6.83 mmol) and 6-chloro-1H-pyrazolo[4,3-c]pyridine-3-carboxylic acid (450 mg, 2.28 mmol) in DMSO (6.75 mL) were stirred at 100° C. overnight under argon atmosphere. After cooling to RT, RM was diluted with water and pH adjusted to 3 with aq. 1M HCl. The precipitate formed was collected by filtration, dried and purified by flash chromatography on a Si cartridge eluting with 0-50% DCM/MeOH/formic acid (90:10:0.3) in DCM to afford the title product (570 mg).
LCMS (Method 1): Rt=1.01, ES+ m/z 337.9/339.9 [M+H]+
Title compound was prepared in a similar manner to intermediate 24a starting from 2-bromo-4-fluoro-1-methoxy-benzene and 6-chloro-1H-pyrazolo[4,3-c]pyridine-3-carboxylic acid.
LCMS (Method 1): Rt=0.96, ES+ m/z 321.9/323.9 [M+H]+
Copper(I)thiophene-2-carboxylate (501 mg, 2.63 mmol), Cs2CO3 (3.42 g, 10.5 mmol), intermediate 11c (1.39 g, 5.25 mmol), 6-chloro-1H-pyrazolo[4,3-c]pyridine-3-carboxylic acid (519 mg, 2.63 mmol in DMSO (9 mL) were stirred at 105° C. for 16 h under nitrogen. After cooling to RT, iodomethane (654 μl, 10.5 mmol) was added and RM stirred at RT for 2 h. RM diluted with water (10 mL) and extracted with DCM (3×8 mL). Combined organic layers were dried over Na2SO4, evaporated to dryness and the residue purified by flash chromatography on a Si cartridge by eluting with 0-50% EtOAc in DCM to afford the title product (682 mg).
LCMS (Method 2): Rt=0.94, ES+ m/z 396.1/398.1 [M+H]+
Title compound was prepared in a similar manner to intermediate 24c starting from intermediate 12 and 6-chloro-1H-pyrazolo[4,3-c]pyridine-3-carboxylic acid.
LCMS (Method 2): Rt=1.26, ES+ m/z 432.0/434.0/436.0 [M+H]+
Intermediate 24d-1 (50.0 mg, 0.12 mmol), sodium thiomethoxide (24 mg, 0.35 mmol), Pd2(dba)3 (10.0 mg, 0.01 mmol), Xantphos (13 mg, 0.02 mmol) in degassed toluene (1.5 mL) were stirred at 80° C. for 3 h under nitrogen. The formed precipitate was collected by filtration, washed with toluene and dried to afford the title compound (68 mg) that was used in the next steps without any further purification.
LCMS (Method 2): Rt=0.62, ES+ m/z 386.1/388.1 [M+H]+
Intermediate 24c (300 mg, 0.76 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (274 mg, 1.1 mmol), K3PO4 (322 mg, 1.5 mmol), XPhos PdG3 (64 mg, 0.076 mmol) in degassed water (3.75 mL)/THF (7.5 mL) were stirred at 70° C. for 2 h under nitrogen. After cooling to RT, RM was diluted with water (10 mL) and extracted with DCM (6×10 mL). Combined organic layers were passed through a phase separator and evaporated to dryness. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-40% DCM/MeOH (20:1) in DCM to afford the title product (262 mg).
LCMS (Method 2): Rt=0.84, ES+ m/z 479.1 [M+H]+
To a mixture of intermediate 23c (25 mg, 0.067 mmol) in DMF (1.5 mL), DIPEA (23 μL, 0.13 mmol), HATU (28 mg, 0.074 mmol) and methylamine (2.0M in THF, 334 μL, 0.67 mmol) were added and RM stirred at 50° C. overnight. After cooling to RT, RM was diluted with EtOAc (5 mL) and washed with sat. aq. NaHCO3 (10 mL). Aqueous layer was further extracted with EtOAc (2×5 mL). Combined organic layers were washed with sat. aq. NaCl (10 mL), dried over Na2SO4 and evaporated under reduced pressure. The residue was purified by flash chromatography on Si cartridge by eluting with 0-24% EtOAc in PE to give the title product (12 mg).
LCMS (Method 1): Rt=1.12, ES+ m/z 387.1/389.1 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 26a from the indicated starting materials. When minor modifications on solvent, and/or temperature were made, they were detailed below in brackets.
To an ice chilled solution of intermediate 26c (276 mg, 0.509 mmol) in dry DCM (6.9 ml), TFA (1.95 ml, 25.4 mmol) was added dropwise. RM was stirred for 1 h reaching RT, then loaded onto an SCX cartridge, washed with methanol and eluted with methanolic ammonia (7M). Relevant fractions were concentrated in vacuo. The residue was dissolved in a mixture of formic acid (768 μL, 20.4 mmol) and aqueous formaldehyde (37.0%, 1.52 mL, 20.4 mmol) and stirred at 60° C. overnight. After cooling to RT, RM was diluted with EtOAc (20 mL), washed with sat. aq. NaHCO3 (3×15 mL), sat. aq. NaCl (15 mL), dried over Na2SO4 and solvent removed under reduced pressure to afford the title product (144 mg) that was used in the next steps without any further purification.
LCMS (Method 2): Rt=1.15 min, ES+ m/z 470.0/472.0 [M+H]+
To a suspension of intermediate 20 (60.0 mg, 0.14 mmol) and tert-butyl N-(azetidin-3-yl)carbamate hydrochloride (32.6 mg, 0.16 mmol) in tetrahydrofuran (3.5 mL), TEA (59.3 μL, 0.43 mmol) was added. RM was stirred at RT overnight, then partitioned between sat. aq. NH4Cl and EtOAc. Organic layer was washed with water, sat. aq. NaCl, dried over Na2SO4 and evaporated to give the title product (62 mg) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.27 min, ES+ m/z 514.1/516.0 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 27a from the indicated starting materials. When minor modifications on solvent, and/or temperature were made, they were detailed below in brackets
Intermediate 5 (2.25 g, 8.25 mmol) and Intermediate 8b (3.92 g, 13.5 mmol) in NMP (35 mL) were stirred at 60° C. for 1 h, then at 120° C. for 2 h. RM was cooled to RT and added with water (250 mL) under vigorous stirring. RM was extracted with EtOAc (3×200 mL). Combined organic layers were washed with sat. aq. NaHCO3 (2×200 mL), sat. aq. NaCl (200 mL), and evaporated under reduced pressure. The crude material was triturated with diisopropyl ether and with DCM/MeOH (5:1) and dried to afford the title product (563 mg).
LCMS (Method 2): Rt=1.21 min, ES+ m/z 471.0/473.1 [M+H]+
Methyl thioglycolate (251 mg, 2.37 mmol) in toluene (8 mL) was added dropwise to a mixture of NaH (60.0%, 158 mg, 3.95 mmol) in toluene (10 mL) under nitrogen atmosphere. RM was stirred at RT for 90 min then intermediate 28 (930 mg, 1.97 mmol), Xantphos (143 mg, 0.25 mmol) and Pd2(dba)3 (90.4 mg, 0.1 mmol) were added and RM further stirred at 100° C. for 1.5 h. After cooling to RT, the formed precipitate was collected by filtration and triturated in water (5 mL), in diisopropyl ether (5 mL) and again in water (5 mL) at pH 5 and dried to afford the title product (0.42 g).
LCMS (Method 2): Rt=0.57 ES+ m/z 483.3 [M+H]+
A solution of tris(propan-2-yl)silanethiol (328 μL, 1.53 mmol) in toluene (2 mL) was added dropwise to a mixture of NaH (60.0%, 102 mg, 2.55 mmol) in toluene (10 mL) and RM stirred under nitrogen at RT for 1.5 h. Intermediate 28 (600 mg, 1.27 mmol), Xantphos (92.1 mg, 0.16 mmol) and Pd2(dba)3 (58.3 mg, 0.06 mmol) were added and RM stirred at 100° C. for 45 min. RM was cooled to RT, quenched by addition of water (20 mL), and filtered through a diacematous earth pad thoroughly washed with EtOAc (2×35 mL). Organic layer was separated and washed with water (20 mL), sat. aq. NaCl (30 mL), dried over MgSO4 and evaporated under reduced pressure. The crude was purified by chromatography on a Si cartridge by eluting with 0-100% EtOAc in cyclohexane to afford the title product (153 mg).
1H-NMR (500 MHz, DMSO-d6) δ: 9.27 (d, J=6.7 Hz, 1H), 9.18 (s, 1H), 8.90 (s, 1H), 8.71 (d, J=3.6 Hz, 1H), 8.30 (s, 1H), 7.64 (d, J=1.6 Hz, 1H), 7.53 (dd, J=8.5, 1.7 Hz, 1H), 7.44 (d, J=8.6 Hz, 1H), 7.16 (dd, J=6.9, 4.0 Hz, 1H), 7.13 (t, J=73.0 Hz, 1H), 2.66 (s, 3H), 0.98 (d, J=6.5 Hz, 18H), 0.92 (m, 3H)
Aq. 37% w/w HCl (75 μL, 2.45 mmol) was added to a mixture of intermediate 30 (150 mg, 0.258 mmol) in EtOH (3 mL) and RM stirred at RT under nitrogen for 2 h. RM was dried under reduced pressure to afford the title product (125 mg) that was used in the next steps without further purification.
1H-NMR (500 MHz, DMSO-d6) δ: 9.23 (dd, J=6.9, 1.6 Hz, 1H), 9.18 (s, 1H), 8.89 (s, 1H), 8.71 (dd, J=4.0, 1.5 Hz, 1H), 8.30 (s, 1H), 7.67 (d, J=1.6 Hz, 1H), 7.53 (dd, J=8.5, 1.7 Hz, 1H), 7.44 (d, J=8.6 Hz, 1H), 7.16 (dd, J=6.9, 4.0 Hz, 1H), 7.13 (t, J=73.0 Hz, 1H), 5.94 (s, 1H), 2.66 (s, 3H)
LCMS (Method 2): RT=0.50 min, ES+ m/z 425.2 [M+H]+
Tris(propan-2-yl)silanethiol (365 μL, 1.7 mmol) in toluene (2 mL) was added dropwise to a mixture of NaH (60%, 113 mg, 2.8 mmol) in toluene (4 mL) and RM stirred under argon at RT for 1.5 h. Intermediate 18k (551 mg, 1.4 mmol) in toluene (4 mL), Xantphos (103 mg, 0.18 mmol) and Pd2(dba)3 (41 mg, 0.071 mmol) were added, and the RM stirred at 100° C. for 45 minutes. After cooling to RT, RM was quenched with sat. aq. NH4Cl (20 mL) and extracted with EtOAc (100 mL). Organic layer was washed with water (10 mL), sat. aq. NaCl (10 mL), dried over Na2SO4 and evaporated under reduced pressure. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-50% EtOAc in cyclohexane to afford the title compound (198 mg).
LCMS (Method 1): RT=1.16 min, ES+ m/z 341.7/343.7 [M+H]+
1H-NMR (300 MHz, CDCl3) δ: 8.81 (s, 1H), 7.46 (d, J=2.3 Hz, 1H), 7.36 (dd, J=8.5, 2.1 Hz, 1H), 7.28 (d, J=8.1 Hz, 1H), 7.19 (s, 1H), 6.31 (t, J=73.0 Hz, 1H), 3.59 (s, 1H), 2.66 (s, 3H)
From the flash chromatography purification, a second pure product was obtained. LC-MS analysis confirmed the structure of dibromoderivative of intermediate 18z and it was identified as Intermediate 33.
LCMS (Method 1): RT=1.80 min, ES+ m/z 341.9/343.9 [M+H]+
1H-NMR (300 MHz, CDCl3) δ: 8.82 (s, 1H), 7.64 (d, J=2.3 Hz, 1H), 7.58 (dd, J=8.5, 2.1 Hz, 1H), 7.26 (d, J=8.1 Hz, 1H), 6.39 (t, J=73.0 Hz, 1H), 2.68 (s, 3H), 1.27 (m, 3H), 1.11 (m, 18H)
A solution of intermediate 32 (60.0 mg, 0.176 mmol) in acetone (2.6 mL) was added to a mixture of 1-bromo-2-methoxy-ethane (19.8 μL, 0.21 mmol), NaI (26.3 mg, 0.18 mmol) and K2CO3 (48.5 mg, 0.351 mmol) in acetone (2.6 mL). RM stirred at 70° C. for 75 min under argon atmosphere. After cooling to RT, RM was partitioned between DCM and sat. aq. NaHCO3. Aqueous phase was extracted with DCM (2×) and combined organic layers dried over Na2SO4 and evaporated to dryness to afford the title product (65.0 mg) that was used in the next steps without further purification.
LCMS (Method 1): RT=1.22 min, ES+ m/z 400.1/402.0 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 34a from the indicated starting materials.
A mixture of intermediate 33 (200 mg, 0.40 mmol) in i-PrOH (2 mL), CsF (140 mg, 0.92 mmol), Cs2CO3 (301 mg, 0.92 mmol), Pd2(dba)3 (12 mg, 0.020 mmol) and a degassed solution of 1-bromo-3-methoxy-benzene (118 μL, 0.92 mmol) in i-PrOH (2 mL) were stirred at 100° C. overnight. After cooling to RT, RM was evaporated under reduced pressure and the residue purified by flash chromatography on a Si cartridge by eluting with 0-50% EtOAc in cyclohexane to afford the title product (83 mg).
LCMS (Method 1): Rt=1.43 min ES+ m/z 448.0/455.0 [M+H]+
To an ice-bath cooled mixture of intermediate 34a (64.0 mg, 0.16 mmol) in dry DCM (3.3 mL), mCPBA (55.2 mg, 0.32 mmol) was added and RM stirred at 0° C. for 70 min. A second equivalent of mCPBA (20 mg, 0.12 mmol) was added and the RM stirred for further 40 min. RM was diluted with DCM and washed with sat. aq. NaHCO3. Organic layer was dried over Na2SO4 and evaporated in vacuo. The crude was purified by flash chromatography on a Si cartridge by eluting with EtOAc in DCM to afford the title product (51.0 mg).
LCMS (Method 1): Rt=1.02 min, ES+ m/z 432.1/434.0 [M+H]+
A solution of Oxone® (263 mg, 0.428 mmol) in water (0.86 mL) was added to a mixture of intermediate 34b (87.0 mg, 0.204 mmol) in MeOH (6.4 mL) and RM stirred at RT for 1 h. RM was diluted with water and extracted twice with DCM, and again after bringing pH of aqueous phase to pH ≈7-8. Combined organic layers were dried over Na2SO4 and solvent removed in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 10% MeOH in DCM to afford the title product (16.0 mg).
LCMS (Method 2): Rt=1.02 min, ES+ m/z 459.1/461.1 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 35b from the indicated starting materials.
To a mixture of intermediate 18ac (100 mg, 0.30 mmol), DIPEA (118 mg, 0.91 mmol) in NMP (3 mL), dimethylamine (2.0M in THF, 457 μL, 0.91 mmol) was added and RM heated under MW irradiation at 120° C. for 30 min. After cooling to RT, RM was partitioned between EtOAc (15 mL) and sat. aq. NaHCO3 (15 mL). Organic layer was washed with sat. aq. NaCl (10 mL) and concentrated in vacuo. The residue was triturated two times in hexane (3 mL), filtered and dried to afford the title product (78 mg).
LCMS (Method 2): Rt=1.34 min, ES+ m/z 337.1/339.1/341.1 [M+H]+
The following intermediates were prepared in a similar manner to intermediate 36a from the indicated starting materials.
To a mixture of intermediate 18ac (200 mg, 0.61 mmol), DIPEA (318 μL, 1.83 mmol) in NMP (2 mL), tert-Butyl 2-aminoacetate (250 μL, 1.83 mmol) was added and RM heated under MW irradiation at 150° C. for 45 min. After cooling to RT, RM was diluted with EtOAc (20 mL), washed with sat. aq. NaHCO3 (5×10 mL) and sat. aq. NaCl (10 mL). Organic layer was dried over Na2SO4 and concentrated in vacuo. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-10% EtOAc in cyclohexane to afford the title product (172.6 mg).
LCMS (Method 2): Rt=1.41 min ES+ m/z 423.1/425.1/427.1 [M+H]+
To an ice cooled solution of intermediate 36d-1 (120 mg, 0.28 mmol) in dry DCM (2 mL), TFA (2 mL, 26.1 mmol) was added dropwise and RM stirred at RT for 48 h. RM was evaporated under reduced pressure, the residue suspended in diethyl ether and solvent removed (two times) to afford the title product (120 mg) that was used in the next step without further purification.
LCMS (Method 2): Rt=0.63 min, ES+ m/z 367.0/369.0/371.0 [M+H]+
To a mixture of intermediate 36d-2 (40.0 mg, 0.08 mmol) in dry DMF (0-5 mL), methylamine hydrochloride (16.8 mg, 0.25 mmol) and DIPEA (72.4 μL, 0.42 mmol) were added, followed by HATU (34.8 mg, 0.09 mmol). RM was stirred at RT overnight, then diluted with EtOAc (15 mL) and washed with sat. aq. NaHCO3 (3×10 mL). Organic layer was washed with sat. aq. NaCl (10 mL), dried over Na2SO4 and concentrated in vacuo. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-5% MeOH in DCM to afford the desired product (24 mg).
LCMS (Method 2): Rt=1.03 min, ES+ m/z 380.0/381.9/383.9 [M+H]+.
A mixture of intermediate 18ac (45.0 mg, 0.14 mmol), acetamide (10.5 mg, 0.18 mmol), Pd2(dba)3 (4.5 mg, 7.8 μmol), Xantphos (3.96 mg, 6.9 μmol), Cs2CO3 (66.9 mg, 0.21 mmol) in previously degassed 1,4-dioxane (1 mL) was heated at 100° C. for 24 h under nitrogen atmosphere. After cooling to RT, RM was diluted with water and the formed precipitate collected by filtration and purified by flash chromatography on a Si cartridge by eluting with 0-15% DCM/MeOH (99:1) in DCM to afford the title product (28 mg).
LCMS (Method 2): Rt=1.11 min, ES+ m/z 351.1, 353.1, 355.1 [M+H]+.
A mixture of Cs2CO3 (223 mg, 0.69 mmol) (dried under vacuum at 150° C. for 1 h), intermediate 18ac (150 mg, 0.46 mmol), tert-butyl carbamate (64.2 mg, 0.55 mmol), Pd2(dba)3 (15.0 mg, 26.1 μmol), Xantphos (13.2 mg, 22.8 μmol) in previously degassed 1,4-dioxane (4 mL) were stirred at 90° C. for 24 h under nitrogen atmosphere. After cooling to RT, RM was partitioned between EtOAc (15 mL) and water (10 mL). Organic layer was washed with water (5 mL), sat. aq. NaCl (10 mL) and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-100% (5% MeOH in DCM) in DCM to afford the title product.
LCMS (Method 2): Rt=1.06 min, ES+ m/z 309.0/331.0/313.0 [M+H]+
To a suspension of intermediate 18ac (80 mg, 0.24 mmol) in dry MeOH (2.4 mL), sodium methoxide in MeOH (25%, 443 μL, 1.9 mmol) was added and RM stirred at 60° C. for 18 h. RM was cooled to RT and quenched in water (10 mL). The formed precipitate was collected by filtration and dried to afford the title product (70 mg).
LCMS (Method 2): Rt=1.40 min, ES+ m/z 324.1/326.1/328.1 [M+H]+.
To a suspension of intermediate 36g-1 (38.0 mg, 0.12 mmol) in MeCN (1.5 mL), TMS-Cl (44.4 μL, 0.35 mmol) and NaI (52.7 mg, 0.352 mmol) were added and RM stirred at 85° C. for 15 min. After cooling to RT, RM was partitioned between water (2 mL) and EtOAc (4 mL). The organic layer was washed with 5% (w/w) aq. Na2S2O3 (10 mL), sat. aq. NaCl (5 mL) and evaporated under reduced pressure to give the title product (14 mg).
LCMS (Method 2): Rt=0.57 min, ES+ m/z 310.1/312.1/314.0 [M+H]+.
To a mixture of intermediate 16 (3.72 g, 9.08 mmol) and benzotrifluoride (120 mL), NBS (1.94 g, 10.9 mmol) and AIBN (298 mg, 1.82 mmol) were added and RM stirred at 80° C. for 3.5 h under argon atmosphere. The precipitate formed was removed by filtration and washed with EtOAc. The filtrate was partitioned between EtOAc and sat. aq. NaCl, organic layer dried over Na2SO4 and evaporated to dryness to afford a mix 4:1 of monobrominated (Intermediate 37-1a) and di-brominated product (Intermediate 37-1b) (total amount 2.57 g) that was used in the next steps without any further purification.
LCMS (Method 2): Rt=1.55 and 1.63 ES+ ion cluster peaks with predominant m/z 490.0, 568.0 [M+H]+
The mix of intermediate 37-1a and intermediate 37-1b from previous step (2.00 g) in DMSO (12 mL)/water (1.2 mL) was stirred vigorously at 100° C. for 10 h. After cooling to RT, RM was diluted with sat. aq. NaHCO3 (12 mL). The formed precipitate was filtered, washed with water (5 mL) and EtOAc (2×10 mL) and discarded. Mother liquors were extracted with EtOAc (3×20 mL). Aqueous layer (after adjusting pH to 6.8) was extracted with EtOAc (3×20 mL), and further extracted when pH adjusted to 4.8 with EtOAc (7×10 mL). Combined organic layers were dried over MgSO4, filtered, and evaporated to dryness. The crude products (650 mg) was obtained as a mix 1:1 of Intermediate 37 and Intermediate 37-2 and it was used in the next synthetic step without any further purification.
LCMS (Method 2): Rt=0.34 min and 0.44 min, ES+ m/z 182.1 and 184.1 [M+H]+
The mix of intermediate 37 and intermediate 37-2 from previous step (from step 2) (630 mg, assumed to be 3.5 mmol) in EtOH (50 mL) was cooled to 0° C. and added with NaBH4 (66 mg, 1.7 mmol). After stirring for 15 min at 0° C., RM was quenched with water (20 mL). The formed precipitate was filtered, washed with water (2×5 mL) and discarded. The combined filtrate was extracted with EtOAc (2×20 mL). Aqueous layer (pH adjusted to 6.8) was further extracted with EtOAc (5×20 mL). Combined organic layers were dried over Na2SO4, filtered and evaporated to dryness. The residue was purified on a Si cartridge by eluting with 0-90% DCM/MeOH (20:1) in DCM to afford the title product (450 mg).
LCMS (Method 2): Rt=0.44, ES+ m/z 184.1 [M+H]+
A mixture of intermediate 18a (70.0 mg, 0.240 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (82.3 mg, 0.336 mmol), an aqueous solution of K3PO4 (0.500 M, 0.960 mL, 0.480 mmol), XPhos Pd G3 (10.2 mg, 0.012 mmol) in degassed THF/water (4.8 mL) was heated at 100° C. for 2 h under argon. RM was cooled to RT and quenched with water (5 mL). The precipitate was collected by filtration and submitted to flash chromatography on a Si cartridge by eluting with 0-100% EtOAc in cyclohexane to afford the title product (72.6 mg).
LCMS (Method 5): Rt=3.37 min, ES+ m/z 375.2 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ: 9.22 (dd, J=7.1, 1.7 Hz, 1H), 9.14 (d, J=1.0 Hz, 1H), 8.88 (s, 1H), 8.70 (dd, J=4.1, 1.7 Hz, 1H), 8.27 (d, J=1.0 Hz, 1H), 7.34-7.47 (m, 3H), 7.15 (dd, J=7.1, 4.1 Hz, 1H), 3.83 (s, 3H), 2.64 (s, 3H)
The following examples were prepared in a similar manner to example 1 from the indicated starting materials. When minor modifications on base, solvent, temperature, ligand and/or palladium source were made, they were stated in brackets.
1H-NMR
To a mixture of intermediate 18u (75.0 mg, 0.18 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (77.3 mg, 0.32 mmol), and solution of K3PO4(0.5 M, 701 μL, 0.35 mmol) in degassed THF/water (2.7 mL), XPhos Pd G3 (7.42 mg, 8.8 μmol) was added and the RM was stirred at 50° C. 1 h under argon. After cooling to RT, RM was diluted with water (5 mL). The precipitate formed was collected by filtration and purified by flash chromatography on a Si cartridge by eluting with 0-100% EtOAc in DCM to afford the title product (63 mg).
LCMS (Method 2), Rt=1.22 min, ES+ m/z 511.2 [M+H]+
An ice chilled solution of intermediate example 58-step 1 (57.0 mg, 0.112 mmol) in dry DCM (1 mL) was treated with TFA (1 mL, 13.4 mmol), warmed up to RT and stirred for 1 h. RM was neutralized with sat. aq. NaHCO3 to form a precipitate that was collected by filtration and followed by washings with a small amount of water/DCM. The crude was purified by chromatography on a Si cartridge by eluting with 0-100% DCM/MeCN/NH4OH (10:10:1) in DCM to afford the title compound(18 mg).
LCMS (Method 5), Rt=2.61 min, ES+ m/z 390.9 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ: 10.44 (br. s, 1H), 9.21 (dd, J=7.1, 1.7 Hz, 1H), 9.11 (d, J=1.2 Hz, 1H), 8.87 (s, 1H), 8.71 (dd, J=4.2, 1.7 Hz, 1H), 8.17 (d, J=1.2 Hz, 1H), 7.36 (d, J=11.1 Hz, 1H), 7.14 (dd, J=7.1, 4.1 Hz, 1H), 6.87 (d, J=8.0 Hz, 1H), 3.71 (s, 3H), 2.61 (s, 3H)
The following examples were prepared in a similar manner to example 58 by replacing intermediate 18u with the starting material indicated in the table below. When minor modifications on base, solvent, temperature, ligand and/or palladium source were made, they were stated in brackets.
1H-NMR
The title compound was prepared in a similar manner to intermediate 18a starting from intermediate 6 and 4-bromo-2-chloro-5-methoxy-pyridine.
LCMS (Method 5), Rt=3.31 min, ES+ m/z 392.4 [M+H]+
1H-NMR (500 MHz, CDCl3) δ:9.08 (d, J=0.9 Hz, 1H), 8.98 (s, 1H), 8.78 (dd, J=7.0, 1.8 Hz, 1H), 8.62 (dd, J=4.0, 1.8 Hz, 1H), 8.46-8.48 (m, 1H), 8.31 (s, 1H), 7.65 (s, 1H), 6.94 (dd, J=7.0, 4.0 Hz, 1H), 4.07 (s, 3H), 2.73 (s, 3H)
Intermediate 5 (60.0 mg, 0.220 mmol) and intermediate 8c (20.0%, 377 mg, 0.36 mmol) in NMP (0.8 mL) were stirred at 60° C. for 1 h and at 100° C. for 2 h. After cooling to RT, RM was diluted with water (10 mL) then extracted with EtOAc (2×10 mL) and DCM (2×10 mL). Combined organic layers were washed with water (4×10 mL), sat. aq. NaCl (10 mL) and evaporated under reduced pressure. The crude material was triturated in DCM to afford the title product (6.3 mg).
LCMS (Method 6), Rt=3.93 min, ES+ m/z 391.44 [M+H]+
1H-NMR (500 MHz, CDCl3) δ: 9.22-9.25 (m, 1H), 9.20 (d, J=1.2 Hz, 1H), 8.90 (s, 1H), 8.67-8.70 (m, 1H), 8.27 (d, J=1.2 Hz, 1H), 7.80 (d, J=8.2 Hz, 1H), 7.68 (dd, J=8.5, 2.1 Hz, 1H), 7.64 (d, J=2.1 Hz, 1H), 7.13-7.18 (m, 1H), 5.27-5.32 (m, 1H), 4.33-4.40 (m, 2H), 2.66 (s, 3H)
Intermediate 5 (30.0 mg, 0.110 mmol) and intermediate 8b (35.0 mg, 0.121 mmol) were suspended in NMP (0.7 mL) and stirred at 60° C. under MW irradiation for 1 h, then at 120° C. for 2 h. After cooling to RT, RM was diluted with water (6 mL) and extracted with EtOAc (2×8 mL). Combined organic layers were washed with water (3×8 mL), sat. aq. NaCl (8 mL), dried over Na2SO4 and evaporated under reduced pressure. The residue was purified by chromatography on a Si cartridge by eluting with 0-1% MeOH in DCM to afford the title product (15 mg).
LCMS (Method 6): Rt=4.88 min, ES+ m/z 471.0/473.0 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ/9.20-9.26 (m, 1H), 9.19 (d, J=1.0 Hz, 1H), 8.90 (s, 1H), 8.70 (dd, J=4.1, 1.8 Hz, 1H), 8.32 (d, J=1.1 Hz, 1H), 7.93 (d, J=2.4 Hz, 1H), 7.85 (dd, J=8.9, 2.5 Hz, 1H), 7.51 (s, 1H), 7.24 (t, J=73.0 Hz, 1H), 7.16 (dd, J=7.1, 4.2 Hz, 1H), 2.66 (s, 3H)
tBuXPhos (9.04 mg, 0.02 mmol) was added to a solution of intermediate 28 (60.0 mg, 0.13 mmol) and zinc cyanide (17.9 mg, 0.15 mmol) in NMP (0.5 mL). RM was stirred at 120° C. under MW irradiation for 15 min, then allylpalladium chloride dimer (9.32 mg, 0.03 mmol) added and stirring continued under the same conditions for 1 h. After cooling to RT, RM was diluted with water (5 mL) and the formed precipitate collected by filtration. The crude material was purified by flash chromatography on a Si cartridge by eluting with 0-45% DCM/MeOH/NH4OH (90:9:0.5) in DCM to afford the title product (21 mg).
LCMS (Method 5): Rt=3.19 min, ES+ m/z 418.4 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ/9.22-9.27 (m, 1H), 9.20 (s, 1H), 8.91 (s, 1H), 8.68-8.73 (m, 1H), 8.34 (s, 1H), 8.26-8.30 (m, 1H), 8.15-8.19 (m, 1H), 7.74 (br d, J=8.9 Hz, 1H), 7.48 (t, J=73.0 Hz, 1H), 7.17 (dd, J=6.9, 4.1 Hz, 1H), 2.67 (s, 3H)
To a mixture of intermediate 28 (50.0 mg, 0.11 mmol), 2,4,6-trimethyl-1,3,5,2,4,6-trioxatriborinane (74.2 μL, 0.53 mmol), Cs2CO3 (70 mg, 0.21 mmol) in degassed 1,4-dioxane/H2O (2:1, 7.2 mL), Pd(PPh3)4(12.3 mg, 0.01 mmol) was added and RM was stirred at 80° C. overnight under argon atmosphere. After cooling to RT, RM was diluted with water (5 mL), the formed precipitate collected by filtration and submitted to a flash chromatography on Si cartridge by eluting with 0-100% EtOAc in DCM to afford the title product (10 mg).
LCMS (Method 5): Rt=3.41 min, ES+ m/z 407.0 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ: 9.22 (dd, J=6.97, 1.74 Hz, 1H), 9.16 (d, J=1.05 Hz, 1H), 8.89 (s, 1H), 8.68 (dd, J=4.01, 1.74 Hz, 1H), 8.28 (d, J=1.05 Hz, 1H), 7.47-7.52 (m, 1H), 7.38-7.48 (m, 2H), 7.14 (dd, J=7.14, 4.18 Hz, 1H), 7.11 (t, J=73.36 Hz, 1H), 2.65 (s, 3H), 2.40 (s, 3H).
To a mixture of intermediate 28 (500.0 mg, 1.06 mmol), Pd(OAc)2 (7.15 mg, 32 mol), Xantphos (18.4 mg, 32 μmol) and formic acid (280 μl, 7.43 mmol) in DMF (5 mL), DCC (438 mg, 2.12 mmol) and TEA (296 μl, 2.12 mmol) were added, and RM stirred at 80° C. for 6 h. RM was cooled to RT and diluted with EtOAc (15 mL) to form a precipitate that was collected by filtration, washed with a small amount of MeOH and dried. The crude was dissolved in aq.1M NaOH (20 mL), filtered, the filtrate acidified with aq. 2M HCl to form a precipitate that was collected by filtration to afford the title product (200 mg).
LCMS (Method 2): Rt=0.51 min, ES+ m/z 437.1 [M+H]+
To a mixture of intermediate example 66-step 1 (30.0 mg, 0.07 mmol), thiazol-2-amine (8.26 mg, 0.08 mmol), DIPEA (24 μL, 0.14 mmol) in dry DMF (1 mL), HATU (28.8 mg, 0.08 mmol) was added and RM stirred at 50° C. for 1 h. RM was cooled to RT and diluted with water (5 mL) to form a precipitate that was collected by filtration. The crude was triturated with MeOH to afford the title product (19.5 mg).
LCMS (Method 5): Rt=3.24 min, ES+ m/z 519.1 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ:12.86 (br s, 1H), 9.17-9.28 (m, 2H), 8.91 (s, 1H), 8.64-8.69 (m, 1H), 8.47 (d, J=1.8 Hz, 1H), 8.37 (dd, J=8.8, 2.14 Hz, 1H), 8.35 (s, 1H), 7.72 (d, J=8.5 Hz, 1H), 7.56 (d, J=3.4 Hz, 1H), 7.45 (t, J=72.4 Hz, 1H), 7.27-7.32 (m, 1H), 7.15 (dd, J=7.0, 4.0 Hz, 1H), 2.70 (s, 3H)
To a mixture of intermediate 29 (55.0 mg, 0.11 mmol) in DMF (1 mL), HATU (52.0 mg, 0.14 mmol) and DIPEA (80 μL, 0.46 mmol) were added and RM stirred at RT for 45 min. Methylamine (2M in THF, 171 μL, 0.342 mmol) was added and stirring continued at RT for 1 h. RM was partitioned between EtOAc (8 mL) and water (10 mL), aqueous layer further extracted with EtOAc (8 mL) and combined organic layers washed with sat. aq. NaHCO3 (2×10 mL), sat. aq. NaCl (10 mL) and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-100% DCM/MeOH (19:1) in DCM to afford the title product (3.57 mg).
LCMS (Method 5): Rt=3.57 min, ES+ m/z 496.5 [M+H]+
1H-NMR (600 MHz, DMSO-d6) δ/9.22-9.26 (m, 1H), 9.17-9.21 (m, 1H), 8.88 (br d, J=1.7 Hz, 1H), 8.68-8.73 (m, 1H), 8.29-8.33 (m, 1H), 8.06-8.12 (m, 1H), 7.66-7.70 (m, 1H), 7.59-7.62 (m, 1H), 7.47-7.52 (m, 1H), 7.18 (t, J=73.0 Hz, 1H), 7.13-7.17 (m, 1H), 3.73 (s, 2H), 2.67 (s, 3H), 2.56 (d, J=4.6 Hz, 3H)
The title compound was prepared in a similar manner to example 67 starting from intermediate 29 and ammonia (0.5M in 1,4-dioxane).
LCMS (Method 6): Rt=3.44 min, ES+ m/z 482.6 [M+H]+
1H-NMR (600 MHz, DMSO-d6) δ: 9.22 (dd, J=7.0, 1.3 Hz, 1H), 9.18 (d, J=1.0 Hz, 1H), 8.90 (s, 1H), 8.71 (dd, J=4.0, 1.5 Hz, 1H), 8.32 (d, J=0.9 Hz, 1H), 7.68 (d, J=2.3 Hz, 1H), 7.61 (dd, J=8.7, 2.3 Hz, 1H), 7.60 (bs, 1H), 7.50 (d, J=8.6 Hz, 1H), 7.18 (t, J=73 Hz, 1H), 7.18 (bs, 1H), 7.16 dd, J=7.1, 4.0 Hz, 1H), 3.73 (s, 2H), 2.67 (s, 3H)
The title compound was prepared in a similar manner to example 67 starting from intermediate 29 and ethanolamine.
LCMS (Method 6): Rt=3.35 min ES+ m/z 526.5 [M+H]
1H-NMR (600 MHz, DMSO-d6, 373 K) δ: 9.14 (d, J=0.8 Hz, 1H), 9.11 (dd, J=7.2, 1.3 Hz, 1H), 8.85 (s, 1H), 8.66 (dd, J=3.9, 1.5 Hz, 1H), 8.29 (d, J=0.8 Hz, 1H), 7.82 (bs, 1H), 7.68 (d, J=2.3 Hz, 1H), 7.60 (dd, J=7.6, 2.3 Hz, 1H), 7.46 (d, J=7.6 Hz, 1H), 7.09 (dd, J=7.1, 4.0 Hz, 1H), 7.04 (t, J=73.0 Hz, 1H), 4.31 (bs, 1H), 3.71 (s, 2H), 3.37 (q, J=5.2 Hz, 2H), 3.12 (q, J=5.4 Hz, 2H), 2.66 (s, 3H)
To a mixture of example 68 (33.0 mg, 0.07 mmol) in EtOH (1.2 mL), a suspension of Oxone® (169 mg, 0.27 mol) in water (0.85 mL) was added and RM stirred at 60° C. for 1 h. RM was diluted with water (2 mL) and DCM (2 mL) and organic layer concentrated under reduced pressure at RT. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-80% DCM/MeOH/NH4OH (90:9:0.5) in DCM to afford the title product (3.6 mg).
LCMS (Method 6): Rt=3.32 min, ES+ m/z 514.2 [M+H]+
1H-NMR (DMSO-d6, 600 MHz) δ: 9.24 (dd, J=7.0, 1.7 Hz, 1H), 9.22 (d, J=1.1 Hz, 1H), 8.91 (s, 1H), 8.70 (dd, J=4.1, 1.7 Hz, 1H), 8.40 (d, J=1.1 Hz, 1H), 8.16 (d, J=2.4 Hz, 1H), 8.11 (dd, J=8.8, 2.4 Hz, 1H), 7.81 (d, J=8.8 Hz, 1H), 7.65 (s, 1H), 7.52 (t, J=72.0 Hz, 1H), 7.40 (br s, 1H), 7.17 (dd, J=7.0, 4.0 Hz, 1H), 4.39 (s, 2H), 2.70 (s, 3H)
Intermediate 31 (20.0 mg, 0.05 mmol), cyclopropyl boronic acid (5.77 mg, 0.07 mmol), copper (II) acetate (8.13 mg, 0.05 mmol), 2,2′-Dipyridyl (6.99 mg, 0.05 mmol) and Cs2CO3 (14.6 mg, 0.05 mmol) in DCE (0.5 mL) were stirred at 70° C. overnight. After cooling to RT, RM was diluted with DCM (5 mL), added with aq. ammonia (24%, 5 mL) and stirred at RT for 10 min. Organic layer was separated and washed with aq. ammonia (24%, 5 mL), water (5 mL), sat. aq. NaCl (5 mL) and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-75% EtOAc in cyclohexane to afford the title product (4.1 mg).
LCMS (Method 5): Rt=4.12 min, ES+ m/z 465.5 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ 9.22-9.25 (m, 1H), 9.17 (s, 1H), 8.90 (s, 1H), 8.68 (dd, J=4.1, 1.8 Hz, 1H), 8.35 (d, J=1.2 Hz, 1H), 7.66 (d, J=2.4 Hz, 1H), 7.56-7.59 (m, 1H), 7.48-7.52 (m, 1H), 7.14-7.18 (m, 1H), 7.14 (t, J=73.0 Hz, 1H), 2.65 (s, 3H), 2.37 (ddd, J=7.3, 4.3, 3.1 Hz, 1H), 1.04-1.11 (m, 2H), 0.62-0.67 (m, 2H)
To a mixture of intermediate 31 (35.0 mg, 0.08 mmol) in DMF (1.5 mL), NaI (12.4 mg, 0.08 mmol), K2CO3 (22.8 mg, 0.17 mmol) and 4-bromotetrahydropyran (10.2 μL, 0.09 mmol) were added and RM stirred at RT for 60 h. RM was partitioned between EtOAc (8 mL) and water (8 mL). Organic layer was washed with water (8 mL), sat.aq. NaHCO3 (8 mL), sat. aq. NaCl (8 mL) and evaporated under reduced pressure. The residue was purified by MDAP preparative HPLC (Method prep 1) to afford the title product (2.5 mg).
LCMS (Method 5): Rt=3.74 min, ES+ m/z 509.1 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ: 9.22-9.27 (m, 1H), 9.18 (d, J=1.2 Hz, 1H), 8.90 (s, 1H), 8.65-8.71 (m, 1H), 8.30-8.33 (m, 1H), 7.69-7.73 (m, 1H), 7.66 (dd, J=8.7, 2.3 Hz, 1H), 7.49-7.53 (m, 1H), 7.22 (t, J=73.0 Hz, 1H), 7.17 (dd, J=7.0, 4.3 Hz, 1H), 3.75-3.82 (m, 2H), 3.56-3.65 (m, 1H), 3.34-3.40 (m, 2H), 2.66-2.68 (m, 3H), 1.86-1.94 (m, 2H), 1.48-1.58 (m, 2H)
To a mixture of intermediate 31 (33.0 mg, 0.08 mmol) in acetone (3 mL), oxetane-3-yl 4-methylbenzenesulfonate (19.5 mg, 0.09 mmol), NaI (11.7 mg, 0.08 mmol) and K2CO3 (21.5 mg, 0.16 mmol) were added. RM was stirred at reflux for 3 h and at RT overnight. RM was partitioned between EtOAc (15 mL) and water (10 mL). Organic layer was washed with sat. aq. NaCl (10 mL) and evaporated under reduced pressure. The residue was purified by MDAP preparative HPLC (Method prep 2) to afford the title product (8 mg).
LCMS (Method 7): Rt=5.25 min, ES+ m/z 481.1 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ 9.22 (dd, J=7.0, 1.7 Hz, 1H), 9.17 (s, 1H), 8.90 (s, 1H), 8.66-8.70 (m, 1H), 8.31 (s, 1H), 7.53-7.56 (m, 1H), 7.50 (s, 2H), 7.18 (t, J=73.0 Hz, 1H), 7.13-7.17 (m, 1H), 5.00 (t, J=7.0 Hz, 2H), 4.67-4.78 (m, 1H), 4.50 (t, J=6.4 Hz, 2H), 2.65 (s, 3H)
To a mixture of intermediate 31 (85.0%, 60.0 mg, 0.12 mmol) in acetone (4 mL), N-Boc-4-bromopiperidine (38.1 mg, 0.14 mmol), NaI (18.0 mg, 0.12 mmol) and K2CO3 (33.2 mg, 0.240 mmol) were added, and RM refluxed for 2.5 h. After cooling to RT, RM was diluted with water (10 mL) to form a precipitate that was collected by filtration to afford the title product (66 mg).
LCMS (Method 2): Rt=1.38 min, ES+ m/z 608.4 [M+H]+
To a mixture of intermediate example 74-step 1 (70.0%, 66.0 mg, 0.08 mmol) in DCM (2 mL), TFA (113 μL, 1.52 mmol) was added and RM stirred at RT overnight. RM was evaporated under reduced pressure, and the residue partitioned between EtOAc (10 mL) and water (10 mL). Aqueous layer was neutralized with sat. aq. NaHCO3 (10 mL) and extracted with DCM (2×10 mL). Combined organic layers were washed with sat. aq. NaCl (10 mL), dried over Na2SO4 and evaporated under reduced pressure to give a crude that was purified by flash chromatography on a Si cartridge by eluting with 0-30% DCM/MeOH/NH4OH (90:9:1.5) in DCM affording the title compound (22 mg).
LCMS (Method 6): Rt=4.51 min, ES+ m/z 508.5 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ 9.22-9.27 (m, 1H), 9.18 (s, 1H), 8.90 (s, 1H), 8.67-8.71 (m, 1H), 8.33 (s, 1H), 7.67 (d, J=2.1 Hz, 1H), 7.60-7.65 (m, 1H), 7.47-7.52 (m, 1H), 7.21 (t, J=73.0 Hz, 1H), 7.13-7.18 (m, 1H), 3.38-3.47 (m, 1H), 2.83-2.91 (m, 2H), 2.66 (s, 3H), 2.41-2.49 (m, 2H), 1.83-1.92 (m, 2H), 1.34-1.45 (m, 2H)
To a mixture of example 74 (14.0 mg, 0.03 mmol) in DCM (0.4 mL), TEA (11.5 μL, 0.08 mmol) was added. RM was cooled in an ice bath followed by the addition of acetic anhydride (3.1 μL, 0.03 mmol), and RM stirred for 2 h. RM was dried under reduced pressure and the residue partitioned between EtOAc (6 mL) and aq. 0.1M HCl. Aqueous layer was neutralized to pH 8 and extracted with EtOAc (2×8 mL). Combined organic layers were washed with sat. aq. NaHCO3 (2×5 mL), sat. aq. NaCl (5 mL) and evaporated under reduced pressure. The crude material was triturated with EtOAc/hexanes to afford the desired product (10 mg).
LCMS (Method 6): Rt=4.21 min, ES+ m/z 550.4 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ 9.22-9.26 (m, 1H), 9.19 (d, J=1.2 Hz, 1H), 8.91 (s, 1H), 8.67-8.72 (m, 1H), 8.33 (s, 1H), 7.72 (d, J=2.1 Hz, 1H), 7.67 (dd, J=8.7, 2.3 Hz, 1H), 7.50-7.54 (m, 1H), 7.23 (t, J=73.0 Hz, 1H), 7.13-7.19 (m, 1H), 4.10-4.16 (m, 1H), 3.68-3.74 (m, 1H), 3.61-3.67 (m, 1H), 3.09-3.17 (m, 1H), 2.77-2.84 (m, 1H), 2.67 (s, 3H), 1.93-2.02 (m, 4H), 1.45-1.54 (m, 1H), 1.31-1.40 (m, 1H), 1.22-1.29 (m, 1H)
To a mixture of intermediate 27a (60.0 mg, 0.12 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (45.7 mg, 0.19 mmol), Cs2CO3 (76 mg, 0.23 mmol) in degassed 1,4-dioxane/water (2:1, 1.95 mL), Pd(PPh3)4 (13.5 mg, 0.01 mmol) was added and RM stirred at 80° C. for 1.5 h under argon atmosphere. After cooling to RT, RM was diluted with EtOAc (15 mL), washed with sat. aq. NaHCO3 (3×10 mL) and sat. aq. NaCl (10 mL). The organic layer was dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-30% DCM/MeCN/NH4OH (10:10:1) in DCM. The material obtained was triturated with acetonitrile to afford the title compound (36 mg).
LCMS (Method 2): Rt=1.19 min, ES+ m/z 597.2/599.2 [M+H]+
An ice chilled solution of intermediate example 76-step 1 (26.0 mg, 0.0435 mmol) in dry DCM (2 ml) was treated with TFA (100 μl, 1.31 mmol), then RM warmed up to RT and stirred for 3 h. RM was loaded on an SCX cartridge, washed with methanol and eluted with methanolic ammonia (7N). The crude was submitted to a flash chromatography on Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:9:1.5) in DCM. The material obtained was triturated with n-hexane/DCM to afford the desired compound (6 mg).
LCMS (Method 4): Rt=1.57 min, ES+ m/z 497.1/499.1 [M+H]+
1H-NMR (600 MHz, DMSO-d6) δ:9.16-9.35 (m, 2H), 8.83-8.97 (m, 1H), 8.71 (br s, 1H), 8.28-8.40 (m, 1H), 7.82-7.93 (m, 1H), 7.71-7.81 (m, 1H), 7.54-7.66 (m, 1H), 7.06-7.40 (m, 1H), 7.14-7.21 (m, 1H), 3.93-4.03 (m, 2H), 3.49-3.63 (m, 2H), 3.42-3.47 (m, 1H), 2.72-2.90 (m, 2H)
To a cooled mixture at 0° C. of example 34 (240 mg, 0.49 mmol) in DCM (8 mL), methanesulfonyl chloride (49.3 μL, 0.64 mmol) and TEA (205 μL, 0.09 mmol) were added and RM stirred for 1.5 h from 0° C. to RT. RM was evaporated under reduced pressure and the crude triturated with water to afford the title product (285 mg).
LCMS (Method 2): Rt=1.06 min, ES+ m/z 568.1/570.1 [M+H]+
To a mixture of intermediate example 76-step 1 (60.0 mg, 0.11 mmol) in dry DMF (1.5 mL), NaN3 (13.7 mg, 0.21 mmol) was added and RM stirred at 85° C. overnight. After cooling to RT, RM was diluted with EtOAc (25 mL), then washed with sat.aq. NaHCO3 (3×15 mL) and sat. aq. NaCl (15 mL). Organic layer was dried over Na2SO4 and concentrated in vacuo to provide the title product (55 mg) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.23 min, ES+ m/z 515.2/517.1 [M+H]+.
Triphenylphosphine (84.0 mg, 0.32 mmol) was added to a solution of intermediate example 77-step 2 (55.0 mg, 0.11 mmol) in THF/water 15:1 (1.6 mL). RM was stirred at RT for 4 h. RM was loaded on a SCX cartridge, washed with MeOH and eluted with methanolic ammonia (7M). Pooled fractions containing the product were evaporated and submitted to flash chromatography purification on a Si cartridge by eluting with 0-65% DCM/MeOH/NH4OH (90:15:1.5) in DCM to afford the title product (16 mg).
LCMS (Method 5): Rt=2.82 min, ES+ m/z 489.1/491.3 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ: 9.46 (s, 1H), 9.23 (d, J=7.0 Hz, 1H), 8.91 (s, 1H), 8.87 (d, J=7.5 Hz, 1H), 8.67-8.75 (m, 1H), 8.31 (s, 1H), 7.80 (d, J=1.9 Hz, 1H), 7.69 (dd, J=8.7, 2.1 Hz, 1H), 7.45 (d, J=8.9 Hz, 1H), 7.17 (dd, J=6.9, 4.1 Hz, 1H), 4.53-4.69 (m, 1H), 3.85 (s, 3H), 3.46-3.56 (m, 1H), 2.28-2.41 (m, 2H), 1.91-2.09 (m, 2H).
Intermediate example 77-step 1 (30.0 mg, 0.05 mmol), N-methyl-2-(methylamino)acetamide (0.5 mL, 4.57 mmol) and DMAP (1.29 mg, 0.01 mmol) in DMSO (100 μL) were reacted at 120° C. under MW irradiation for 3 h. After cooling to RT, RM was diluted with EtOAc (10 mL), washed with sat.aq. NaHCO3 (3×5 mL) and sat. aq. NaCl (5 mL). Organic layer was dried over Na2SO4 and concentrated in vacuo to provide a crude product that was chromatographed on a Si cartridge by eluting with 0-100% DCM/MeCN/MeOH (10:10:2) in DCM to afford the title product (2 mg).
LCMS (Method 5): Rt=2.89 min, ES+ m/z 574.2/576.1 [M+H]+
1H-NMR (300 MHz, DMSO-d6, 353 K) δ:9.49 (s, 1H), 9.13-9.22 (m, 1H), 8.89 (s, 1H), 8.59-8.80 (m, 2H), 8.32 (s, 1H), 7.73-7.80 (m, 1H), 7.65-7.71 (m, 1H), 7.49-7.64 (m, 1H), 7.46 (br d, J=8.9 Hz, 1H), 7.10-7.18 (m, 1H), 4.47-4.58 (m, 1H), 3.88 (s, 3H), 3.18-3.23 (m, 1H), 2.82-2.90 (m, 2H), 2.64-2.70 (m, 3H), 2.23-2.34 (m, 4H), 2.13-2.21 (m, 3H)
The title product was prepared in a similar manner to example 78 starting from intermediate example 77-step 1 and morpholine.
LCMS (Method 5): Rt=2.93 min, ES+ m/z 559.2/561.1 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ: 9.46 (d, J=1.2 Hz, 1H), 9.24 (dd, J=6.9, 1.7 Hz, 1H), 8.97 (d, J=7.3 Hz, 1H), 8.91 (s, 1H), 8.72 (dd, J=4.0, 1.5 Hz, 1H), 8.31 (d, J=0.9 Hz, 1H), 7.81 (d, J=2.7 Hz, 1H), 7.70 (dd, J=9.0, 2.6 Hz, 1H), 7.46 (d, J=9.2 Hz, 1H), 7.17 (dd, J=6.9, 4.1 Hz, 1H), 4.50 (sxt, J=7.2 Hz, 1H), 3.86 (s, 3H), 3.60 (br t, J=4.3 Hz, 4H), 2.77-2.87 (m, 1H), 2.18-2.34 (m, 8H)
Example 77 (12.0 mg, 0.0245 mmol) was dissolved in a mixture of formic acid (254 μl, 6.72 mmol)/aq. formaldehyde (37.0%, 500 μl, 6.72 mmol) and stirred at 60° C. for 4 h. RM was diluted with EtOAc (15 mL), washed with sat.aq. NaHCO3 (3×15 mL), sat. aq. NaCl (15 mL), dried over Na2SO4 and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-65% DCM/MeOH/NH4OH (90:9:1.5) in DCM to afford the title product (10 mg).
LCMS (Method 5): Rt=2.91 min, ES+ m/z 517.2/519.0 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ:9.46 (s, 1H), 9.23 (dd, J=6.9, 1.3 Hz, 1H), 8.95 (d, J=7.1 Hz, 1H), 8.91 (s, 1H), 8.67-8.78 (m, 1H), 8.31 (s, 1H), 7.81 (d, J=2.4 Hz, 1H), 7.70 (dd, J=8.8, 2.5 Hz, 1H), 7.45 (d, J=9.1 Hz, 1H), 7.17 (dd, J=6.8, 4.2 Hz, 1H), 4.38-4.53 (m, 1H), 3.85 (s, 3H), 2.67-2.81 (m, 1H), 2.22 (br t, J=6.4 Hz, 4H), 2.06 (s, 6H)
To a mixture of intermediate 23c (100 mg, 0.27 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (105 mg, 0.43 mmol) and Cs2CO3 (174 mg, 0.54 mmol) in a degassed mixture of dioxane/water (2:1, 4.5 mL), Pd(PPh3)4 (30.9 mg, 0.03 mmol) was added and RM stirred at 80° C. overnight under argon. After cooling to RT, RM was diluted with EtOAc and extracted with water. Aqueous layer was acidified with aq. 2M HCl and the formed precipitate collected by filtration. The crude material was purified by flash chromatography on a Si cartridge by eluting with DCM/MeOH/formic acid (90:5:0.3) in DCM to afford the title product (15 mg).
LCMS (Method 2): Rt=0.57 min, ES+ m/z 456.9/458.9 [M+H]+
To a mixture of intermediate example 81-step 1 (15.0 mg, 32.8 μmol), tert-butyl N-(3-aminocyclobutyl) carbamate (7.34 mg, 39.4 μmol) and DIPEA (12 μL, 65 μmol) in dry DMF (1 mL), HATU (14 mg, 36.1 μmol) was added and RM stirred at 50° C. for 1 h. After cooling to RT, RM was diluted with EtOAc (15 mL), washed with sat. aq. NaHCO3 (3×10 mL) and sat. aq. NaCl (10 mL). Organic layer was dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-40% DCM/MeCN/MeOH (10:10:1) in DCM. The material obtained was dissolved in DCM (2 mL) and cooled in an ice-bath prior to dropwise addition of TFA (122 μl, 50 eq). RM was allowed to warm to RT over 2 h and then loaded on a SCX cartridge, washed with MeOH and eluted with methanolic ammonia (1.5 N) to afford the title product (10 mg).
LCMS (Method 5): Rt=2.88 min, ES+ m/z 525.1/527.1 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ:9.50 (s, 1H), 9.25 (br d, J=6.7 Hz, 1H), 8.93 (s, 1H), 8.76 (br d, J=7.9 Hz, 1H), 8.72 (br d, J=3.1 Hz, 1H), 8.38 (s, 1H), 8.04 (d, J=2.1 Hz, 1H), 7.84 (dd, J=9.0, 2.3 Hz, 1H), 7.65 (d, J=9.1 Hz, 1H), 7.28 (t, J=72.5 Hz, 1H), 7.18 (dd, J=6.9, 4.1 Hz, 1H), 4.04-4.16 (m, 1H), 3.05 (quin, J=7.8 Hz, 1H), 2.53-2.62 (m, 2H), 1.82-1.94 (m, 2H)
Intermediate 25 (40.0 mg, 0.08 mmol), DABAL-Me3 (32.1 mg, 0.13 mmol),THF (2 mL) and N′,N′-dimethylethane-1,2-diamine (13.7 μL, 0.13 mmol) were heated at 130° C. under MW irradiation for 10 min in nitrogen atmosphere. A second equivalent of DABAL-Me3 (32.1 mg, 0.125 mmol) was added and RM further heated for 10 min under the same conditions. RM was carefully quenched with aq. 1M HCl (2 mL) and washed with DCM (10 mL). Aqueous layer was brought to pH 9.4 using aq. 2M NaOH and extracted with DCM (5×5 mL). Combined organic layers were passed through a phase separator and evaporated to dryness. The crude was purified by flash chromatography on a Si cartridge by eluting with 0-75% DCM/MeOH/NH4OH (90:9:0.5) in DCM to afford the title compound (25 mg).
LCMS (Method 5): Rt=2.26 min, ES+ m/z 535.3 [M+H]+
1H-NMR (600 MHz, DMSO-d6) δ: 9.52 (d, J=1.9 Hz, 1H); 9.25 (dd, J=6.9, 1.7 Hz, 1H); 8.93 (s, 1H); 8.72 (dd, J=4.1, 1.8 Hz, 1H); 8.59 (t, J=5.7 Hz, 1H); 8.34 (d, J=0.9 Hz, 1H); 8.22 (d, J=2.3 Hz, 1H); 8.18 (dd, J=8.8, 2.3 Hz, 1H); 7.69 (d, J=8.8 Hz, 1H); 7.18 (dd, J=6.9, 4.1 Hz, 1H); 3.98 (s, 3H); 3.45 (q, 6.5 Hz, 2H); 3.31 (s, 3H); 2.45 (t, J=6.8 Hz, 2H); 2.20 (s, 6H)
The following examples were prepared in a similar manner to example 82 from the indicated starting materials.
1H-NMR (600 MHz, DMSO-d6) δ: 9.52 (d, J = 1.3 Hz, 1H), 9.25 (dd, J = 7.1, 1.7 Hz, 1H), 8.90-8.94 (m, 2H), 8.72 (dd, J = 4.1, 1.7 Hz, 1H), 8.37 (d, J = 1.3 Hz, 1H), 8.22 (d, J = 2.2 Hz, 1H), 8.18 (dd, J = 8.9, 2.3 Hz, 1H), 7.69 (d, J = 9.0 Hz, 1H), 7.19 (dd, J = 7.0, 4.0 Hz, 1H), 4.00 (s, 3H), 3.35-3.41 (m, 2H), 3.30-3.31 (m, 3H), 2.30 (t, J = 6.9 Hz, 2H), 2.15 (s, 6H), 1.72 (quin, J = 7.1 Hz, 2H).
1H-NMR (500 MHz, DMSO-d6) δ: 9.52 (d, J = 1.2 Hz, 1H), 9.25 (dd, J = 7.0, 1.8 Hz, 1H), 8.98 (t, J = 5.6 Hz, 1H), 8.93 (s, 1H), 8.72 (dd, J = 4.1, 1.7 Hz, 1H), 8.35 (d, J = 1.2 Hz, 1H), 8.21 (d, J = 2.4 Hz, 1H), 8.17-8.20 (m, 1H), 7.69 (d, J = 8.9 Hz, 1H), 7.18 (dd, J = 7.0, 4.3 Hz, 1H), 3.98 (s, 3H), 3.56 (t, J = 4.6 Hz, 4H), 3.39-3.44 (m, 2H), 3.29-3.30 (m, 3H), 2.33- 2.41 (m, 6H), 1.75 (quin, J = 6.7 Hz, 2H).
To a mixture of intermediate 24c (543 mg, 1.37 mmol) in THE (11.3 mL), a solution of LiOH (165 mg, 6.86 mmol) in water (3.75 mL) was added and RM stirred at RT overnight. RM was concentrated in vacuo. The residue was taken in water and pH adjusted to 2.5 using aq.1M HCl to form a precipitate that was collected by filtration, washed with water and dried to afford the title product (485 mg).
LCMS (Method 2): Rt=0.44, ES+ m/z 382.0/383.9 [M+H]+
Intermediate example 85-step 1 (330 mg, 0.86 mmol) was dissolved in t-BuOH (15 mL) and TEA (361 μL, 2.6 mmol) and refluxed for 30 min. RM was allowed to cool to RT, added with DPPA (279 μL, 1.3 mmol) and refluxed for 10 h. RM was concentrated under reduced pressure and the residue purified by flash chromatography on a Si cartridge by eluting with 0-100% EtOAc in cyclohexane. The isolated material was triturated with ethyl ether to afford the title product (224 mg).
LCMS (Method 2): Rt=1.04, ES+ m/z 453.1/455.1 [M+H]+
To a degassed mixture of intermediate example 85-step 2 (224 mg, 0.50 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (182 mg, 0.742 mmol) and K3PO4 (262 mg, 1.24 mmol) in a water (4.4 mL)/THF (8.8 mL) mixture, XPhos PdG3 (25 mg, 0.06 mmol) was added and RM stirred at 75° C. for 2 h under argon. After cooling to RT, RM was diluted with water (15 mL) and sat. aq. NaHCO3 (15 mL) and extracted with DCM (4×15 mL). Combined organic layers were washed with sat. aq. NaCl, dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:40:1) in DCM to afford the title product (45 mg).
LCMS (Method 2): Rt=1.01, ES+ m/z 536.1 [M+H]+
To a mixture of intermediate 85-step 3 (45.0 mg, 0.08 mmol) in dry DMF (1.5 mL), NaH, (60% dispersion in mineral oil, 3.4 mg, 0.08 mmol) was added at 0° C. RM was stirred at 0° C. for 1 h, then iodomethane (5.75 μl, 0.09 mmol) was added. RM was allowed to warm to RT. After stirring for 2 h, RM was quenched with water and extracted with EtOAc (3×). Combined organic layers were washed with sat. aq. NaCl, dried and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-100% EtOAc in cyclohexane to afford the title product (30 mg).
LCMS (Method 2): Rt=1.07, ES+ m/z 550.9 [M+H]+
To a mixture of intermediate example 85-step 4 (30.0 mg, 0.05 mmol) in DCM (3 mL), TFA (243 μL, 3.28 mmol) was added and RM stirred at RT overnight. RM was dried under reduced pressure and the residue taken in MeOH, loaded onto an SCX cartridge, washed with MeOH and eluted with 2M methanolic ammonia. The material obtained was submitted to flash chromatography on a Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:9:1.5) in DCM to afford the title product (15 mg).
LCMS (Method 7): Rt=3.74 min, ES+ m/z 450.0 [M+H]+
1HNMR (500 MHz, DMSO-d6) δ: 9.21-9.23 (m, 1H); 9.06 (d, J=0.6 Hz, 1H); 8.86 (s, 1H); 8.71 (dd, J=4.1 Hz, J=1.7 Hz, 1H); 8.18 (d, J=0.9 Hz, 1H); 8.01 (d, J=2.4 Hz, 1H); 7.97 (dd, J=8.9 Hz, J=2.4 Hz, 1H); 7.58 (d, J=8.9 Hz, 1H); 7.16 (dd, J=7.0 Hz, J=4.1 Hz, 1H); 6.91 (q, J=4.8 Hz, 1H); 4.02 (s, 3H); 3.26 (s, 3H); 2.95 (d, J=5.2 Hz, 3H)
Intermediate 18o (77 mg, 0.12 mmol) in EtOH (1.8 mL), ammonium formate (46 mg, 0.73 mmol) and Pt/C (3% on activated carbon, sulfided, 50%, 9.5 mg, 0.02 mmol) were refluxed for 2 h. RM was diluted with DCM, filtered through a diacemateous earth pad and washed with DCM. The filtrate was evaporated and the residue partitioned between water and DCM. Aqueous layer was further extracted with DCM (2×15 mL). Combined organic layers were washed with sat. aq. NaCl, dried over Na2SO4 and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:9:0.5) in DCM to afford the title compound (18 mg).
LCMS (Method 2): Rt=0.83, ES+ m/z 361.1/363.1 [M+H]+
The title product was prepared on a similar manner as example 85-step 3 starting from intermediate example 86-step 1.
LCMS (Method 1): Rt=0.76, ES+ m/z 443.9 [M+H]+
To a cooled (at 0° C.) mixture of intermediate example 86-step 2 (14 mg, 0.03 pyridine (2.8 mg, 0.03 mmol) followed by methanesulfonyl chloride (2.2 μL, 0.03 mmol) were added. RM was stirred at 0° C. for 15 min and at RT overnight. RM was diluted with sat. aq. NaHCO3 and extracted with DCM (4×15 mL). Combined organic layers were washed with sat. aq. NaCl, dried over Na2SO4 and solvent removed under reduced pressure. The residue was purified by flash chromatography on Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:9:1.5) in DCM to afford the title product (5 mg).
LCMS (Method 7): Rt=3.14 min, ES+ m/z 522.2 [M+H]+
1H-NMR (600 MHz, DMSO-d6) δ: 9.61 (bs, 1H), 9.21 (dd, J=7.1, 1.7 Hz, 1H), 9.09 (d, J=1.0 Hz, 1H), 8.86 (s. 1H), 8.70 (dd, J=4.0, 1.7 Hz, 1H), 8.15 (d, J=1.0 Hz, 1H), 7.37 (d, J=2.6 Hz, 1H), 7.31 (d, J=8.9 Hz, 1H), 7.28 (dd, J=8.9, 2.6 Hz, 1H), 7.15 (dd, J=7.1, 4.1 Hz, 1H), 6.74 (t, J=5.6 Hz, 1H), 3.87 (s, 3H), 3.42 (q, J=6.1 Hz, 2H), 2.98 (s, 3H), 2.60-2.56 (m, 2H), 2.24 (s, 6H).
A suspension of BOC—Sarcosine (42.8 mg, 0.23 mmol) and EEDQ (56.0 mg, 0.23 mmol) in DCE (1 mL) was stirred for 10 min at RT. Intermediate 181 (35.0 mg, 0.11 mmol) in DCE (2 mL) was added and RM was stirred at 80° C. overnight. RM was diluted with DCM and washed with sat. aq. NaHCO3 (2×5 mL). Organic layer was dried over Na2SO4 and concentrated to give a residue that was purified by flash chromatography on a Si cartridge by eluting with 0.100% DCM/MeOH (20:1) in DCM. The material obtained was triturated with diethyl ether and cyclohexane to afford the title product (29 mg).
LCMS (Method 2): Rt=1.20 min, ES+ m/z 479.1/481.0
A mixture of 1,4-dioxane/water (2:1, 0.9 mL) and Pd(PPh3)4 (6.98 mg, 6.0 μmol) were added to a vial charged with intermediate example 87-step 1 (29.0 mg, 0.06 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (22.2 mg, 0.09 mmol) and Cs2CO3 (39.3 mg, 0.12 mmol). RM was stirred at 80° C. for 2 h under argon. After cooling to RT, RM was diluted with EtOAc (15 mL), then washed with sat.aq. NaHCO3 (3×5 mL) and sat. aq. NaCl (5 mL). Organic layer was dried over Na2SO4 and concentrated in vacuo. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-10% MeOH in EtOAc to afford the title product (15 mg).
LCMS (Method 2): Rt=1.12 min, ES+ m/z 563.3/565.2.
A solution of intermediate 87-step 2 (15.0 mg, 26.6 μmol) in DCE (0.5 mL) was treated with TFA (69.3 μL, 0.93 mmol) and RM stirred at RT for 1 h. RM was evaporated under reduced pressure and the residue purified by flash chromatography on a Si cartridge by eluting with 0-100% DCM/MeOH/NH4OH (90:1:0.1), to afford the title product (11.5 mg).
LCMS (Method 3): Rt=0.97 min, ES+ m/z 462.9 [M+H]+
1H-NMR (300 MHz, DMSO-d6) δ: 9.41 (d, J=1.0 Hz, 1H), 9.23 (dd, J=7.1, 1.7 Hz, 1H), 8.88 (s, 1H), 8.71 (dd, J=4.1, 1.7 Hz, 1H), 8.22 (d, J=1.0 Hz, 1H), 7.67-7.56 (m, 2H), 7.45-7.39 (m, 1H), 7.16 (dd, J=7.0, 4.0 Hz, 1H), 6.73 (br s, 1H), 3.86 (s, 3H), 3.43 (s, 2H), 2.38 (s, 3H).
Intermediate 37 (193 mg, 1.05 mmol), intermediate 13a (538 mg, 1.58 mmol), K2CO3 (291 mg, 2.10 mmol), copper(I)iodide (100 mg, 0.526 mmol) and DMCHA (166 μL 1.05 mmol) in DMF (2.9 mL) were stirred at 100° C. for 10 h under argon atmosphere. After cooling to RT, RM was diluted with EtOAc and washed multiple times with aqueous ammonia (1M). The organic layer was dried over Na2SO4 and evaporated to dryness. The residue was cromatographed on a silica gel column by eluting with 0-50% EtOAc in DCM to afford the title product was (108 mg).
LCMS (Method 2): Rt=1.02 min, ES+ m/z 444.1/446.1 [M+H]+
DMP (115 mg, 0.272 mmol) was added to a suspension of intermediate example 88-step 1 (107 mg, 0.23 mmol) in DCM (10 mL). RM was stirred at RT for 1 h, then quenched with a mixture of sat. aq. Na2S2O3/sat. aq. NaHCO3 (1:1, 10 mL) and stirred for further 30 min. Organic layer was dried over Na2SO4 and solvent removed under reduced pressure to afford the title product (102 mg) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.33, ES+ m/z 442.1/444.1 [M+H]+
A solution of NaClO2 (207 mg, 2.3 mmol), NaH2PO4 (274 mg, 32.3 mmol) in water (0.61 mL) was added to a solution of intermediate example 88-step 2 (101 mg, 0.23 mmol) in THE (3.7 mL), then 2-Methyl-2-butene (1.1 mL, 10 mmol) was added and RM stirred at 40° C. overnight. After cooling to RT, RM was concentrated under reduced pressure and diluted with water. The pH of aqueous mixture was adjusted to 3 using aq. 1N HCl to form a precipitate was collected by filtration, washed with water and dried to afford the desired product (104 mg) that was used in the next step without further purification.
LCMS (Method 2): Rt=0.72, ES+ m/z 458.1/460.0 [M+H]+
To a solution of intermediate example 88-step 3 (72.0 mg, 0.14 mmol), N′,N′-dimethylpropane-1,3-diamine (34.0 μL, 0.27 mmol) and DIPEA (70.7 μL, 0.41 mmol) in dry DMF (0.7 mL), HATU (56.6 mg, 0.15 mmol) was added. RM was stirred at 60° C. for 1 h. A second equivalent of HATU (56.6 mg, 0.15 mmol) was added and RM stirred for further 50 min. RM was diluted with EtOAc and washed with sat. aq. NH4Cl, sat. aq. NaHCO3, water and sat. aq. NaCl. Organic layer was dried over Na2SO4 and evaporated to dryness. The residue was purified by flash chromatography on a Si cartridge by eluting with 5 to 10% of MeOH in DCM to afford the title product (42 mg).
LCMS (Method 2): Rt=1.28, ES+ m/z 542.3/544.2 [M+H]+
THF (1.58 mL) and water (0.55 mL) were added to a vial with intermediate example 88-step 4 (40.7 mg, 0.07 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (26.2 mg, 0.11 mmol) and K3PO4 (30.3 mg, 0.14 mmol). XPhos Pd G3 (6.04 mg, 7.1 μmol) was added and RM stirred at 60° C. for 75 min under argon atmosphere. After cooling to RT, RM was partitioned between DCM and water. Organic layer was washed with water, and sat. aq. NaCl, dried over Na2SO4 and evaporated to dryness. The residue was chromatographed on silica gel column by eluting with DCM/MeOH/NH4OH (90:9:1.5) in DCM to afford the title product (24.5 mg).
LCMS (Method 2): Rt=1.20, ES+ m/z 625.4 [M+H]+
A suspension of intermediate example 87-step 5 (22.3 mg, 0.04 mmol) in dichloromethane (0.5 mL) was cooled in an ice-bath and treated with TFA (318 μL, 4.28 mmol). RM was stirred at RT for 20 min. RM was evaporated to dryness and partitioned between DCM and water (pH adjusted to ≈8 using sat. aq. NaHCO3). The formed precipitate was collected by filtration, washed with water and dried to afford the title product (6.20 mg).
LCMS (Method 3): Rt=0.94 min, ES+ m/z 505.3
1H-NMR (500 MHz, DMSO-d6) δ: 9.48 (s, 1H), 9.23 (br d, J=7.0 Hz, 1H), 8.91 (s, 1H), 8.76 (br t, J=5.5 Hz, 1H), 8.72 (br d, J=3.1 Hz, 1H), 8.26 (s, 1H), 7.53 (br d, J=11.0 Hz, 1H), 7.15 (dd, J=6.7, 4.0 Hz, 1H), 6.90 (br d, J=7.6 Hz, 1H), 3.72 (s, 3H), 3.35 (m, 2H, overlap with HDO), 2.28 (br t, J=6.9 Hz, 2H), 2.14 (s, 6H), 1.70 (quin, J=6.9 Hz, 2H).
A solution of intermediate 37-1a/intermediate 37-1b (mixture obtained after step 1 of intermediate 37) (563 mg, 1.15 mmol) in THF (11.7 mL) was added dropwise to a solution of methylamine (2.0M in THF, 5.76 mL, 11.5 mmol) and stirred at RT for 45 min. RM was dried under reduced pressure and the residue partitioned between EtOAc and sat. aq. NaHCO3. Organic layer was dried over Na2SO4 and evaporated to dryness. The residue was chromatographed on silica gel column by eluting with DCM/MeOH (20:1) in DCM to afford the title product.
LCMS (Method 2): Rt=1.37, ES+ m/z 439.2/441.1 [M+H]+
TFA (5.91 mL, 79.6 mmol) was added to a solution of intermediate 89-step 1 (520 mg, 1.18 mmol) and triethylsilane (568 μL, 3.55 mmol) in dichloromethane (5.91 mL). RM was stirred at RT for 2 h. RM was evaporated under reduced pressure and the residue chromatographed on silica gel column by eluting with DCM/MeOH/NH4OH (90:9:1.5) to afford the title product.
LCMS (Method 2): Rt=0.50, ES+ m/z 197.0/199.0 [M+H]+.
Triethylamine (417 μL, 2.99 mmol) and Boc2O (256 mg, 1.17 mmol) were added to a solution of intermediate example 89-step 2 (210 mg, 1.07 mmol) in DCM (5 mL). RM was stirred at RT for 100 min, then partitioned between DCM and sat. aq. NaHCO3. Organic layer was washed with water and sat. aq. NaCl, dried over Na2SO4 and evaporated under reduced pressure. The residue was cromatographed on silica gel column by eluting with DCM/MeOH (20:1) to afford the title product (199 mg).
LCMS (Method 2): Rt=0.91, ES+ m/z 297.1/299.1 [M+H]+.
Intermediate example 89-step 3 (70.0 mg, 0.24 mmol), intermediate 11c (93.8 mg, 0.35 mmol), K2CO3 (65.2 mg, 0.472 mmol), copper(I)iodide (33.7 mg, 0.18 mmol) and DMCHA (50.3 mg, 0.35 mmol) in DMF (0.8 mL) were stirred at 100° C. overnight under argon atmosphere. After cooling to RT, RM was partitioned between EtOAc and water. Organic layer was washed with water, sat. aq. NaCl, dried over Na2SO4 and solvent removed under reduced pressure. The residue was chromatographed on silica gel column by eluting with DCM/MeOH (30:1) in DCM, followed by a second purification on silica gel column by eluting with EtOAc in n-hexane (2:1) to afford the title product (29.0 mg).
LCMS (Method 2): Rt=1.11, ES+ m/z 481.0/482.9 [M+H]+.
Intermediate example 89-step 4 (27.0 mg, 0.06 mmol), 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyrazolo[1,5-a]pyrimidine (24.8 mg, 0.10 mmol), K3PO4 (23.8 mg, 0.11 mmol) in THF (1.18 mL) and water (0.41 mL) were degassed with argon, then XPhos Pd G3 (4.75 mg, 5.6 μmol) was added. RM was stirred at 60° C. for 1 h under argon. After cooling to RT, RM was partitioned between DCM and water. Organic layer was washed with water, sat. aq. NaCl, dried over Na2SO4 and solvent removed under reduced pressure. The residue was chromatographed on silica gel column by eluting with MeOH in DCM from 0 to 1:30 followed by further purification on silica gel column eluting with DCM/EtOAc, (1:1) to afford the title product (26.0 mg).
LCMS (Method 5): Rt=4.28, ES+ m/z 564.3 [M+H]+.
A suspension of intermediate example 88-step 5 (23.0 mg, 0.04 mmol) in DCM (0.5 mL) was treated with TFA (106 μL, 1.43 mmol) at RT for 1 h. RM was evaporated under reduced pressure and the residue was chromatographed on a silica gel column by eluting with DCM/MeOH/NH4OH (90:9:1.5) to afford the title product (17.5 mg).
LCMS (Method 3): Rt=0.78 min, ES+ m/z 464.2 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ: 9.32 (d, J=0.9 Hz, 1H), 9.23 (dd, J=7.0, 1.8 Hz, 1H), 8.89 (s, 1H), 8.71 (dd, J=4.0, 1.8 Hz, 1H), 8.33 (d, J=0.9 Hz, 1H), 8.09 (dd, J=8.9, 2.1 Hz, 1H), 8.05 (d, J=2.1 Hz, 1H), 7.65 (d, J=8.9 Hz, 1H), 7.17 (dd, J=7.0, 4.3 Hz, 1H), 4.13 (s, 2H), 4.00 (s, 3H), 3.28 (s, 3H), 2.38 (s, 3H)
To a degassed mixture of intermediate 18a (70 mg, 0.24 mmol), 2-amino-3-methoxypyrazine (39 mg, 0.31 mmol), sodium t-butoxide (35 mg, 0.36 mmol) in 1,4-dioxane (2.1 mL), RuPhos-Pd-G3 (30 mg, 0.04 mmol) was added and RM stirred at 100° C. for 3 h under argon atmosphere. After cooling to RT, RM was diluted with water (5 mL) to form a precipitate that was collected by filtration to afford the title product (110 mg) that was used in the next steps without further purification.
LCMS (Method 2): Rt=1.21, ES+ m/z 381.1 [M+H]+
TMS-Cl (110 μL, 0.84 mmol) and NaI (126 mg, 0.84 mmol) were added to a mixture of intermediate example 90-step 1 (107 mg, 0.28 mmol) in acetonitrile (8 mL). RM was stirred at 85° C. for 2 h, then cooled to RT and evaporated under reduced pressure. The residue was purified by flash chromatography on a Si cartridge by eluting with 0-40% DCM/MeOH/NH4OH (90:9:0.5) in DCM to afford the title compound (51 mg).
LCMS (Method 5): Rt=3.26 min, ES+ m/z 367.1[M+H]+
1H-NMR (300 MHz, DMSO-d6) δ=12.19 (br s, 1H), 8.87 (d, J=0.9 Hz, 1H), 8.75 (s, 1H), 8.19 (d, J=1.0 Hz, 1H), 7.30-7.44 (m, 3H), 6.83-6.97 (m, 2H), 3.82 (s, 3H), 2.58 (s, 3H)
The following examples were prepared in a similar manner to example 90 from the indicated starting materials. When minor modifications on ligand/palladium source were made, they were reported in brackets.
1H-NMR
The objective of this study was to assess the capability of compounds to inhibit all 4 JAK isoforms activity in a cell-free environment. Assay for JAK 1, JAK 2, JAK 3 and TYK2 were performed by Time-resolved fluorescence resonance energy transfer (TR-FRET) technology. It consists in the interaction of two labelled binding partners detected by the energy transfer from an excited donor to an acceptor dye and measurement of light emission by the acceptor dye. LANCE Ultra kinase assay was used. In presence of JAK 1, JAK 2, JAK 3 and TYK2 kinases and ATP (corresponding to Km), the ULight peptide substrate (LANCE Ulight-JAK-1 (Tyr1023) Peptide, Perkin Elmer, TRF0121) is phosphorylated. It is then captured by Eu-anti-phospho-substrate antibody (LANCE Eu-W1024 Anti-phosphotyrosine (PT66), Perkin Elmer, AD0069), which bring the Eu-chelate donor and ULight acceptor dyes into close proximity. Upon excitation at 320 nm, the Eu-chelate transfers its energy to the ULight dye, resulting in a fluorescent light emission at 665 nm.
Serial dilutions of compounds in pure DMSO are prepared from 10 mM DMSO stock solutions. Compounds were tested in 384-well plate for 11 consecutive 5-fold dilutions starting from 20 μM highest concentration (20 μM-2 μM). 200 nL of compound were transferred from mother plate to test plate by using Mosquito (TTP labtech). Assay was performed in 384-well Perkin Elmer test plate in 20 μL assay volume (kinase reaction) and 40 μL total volume (stopping reagent and antibody detection reagents). In 10 μL of substrate solution (peptide+ATP) 30/50/20/10 nM of peptide and 20/0.7/0.2/12 μM of ATP were added for JAK 1, JAK 2, JAK 3 and TYK2 respectively. 10 μL of enzyme solution was added to kinase reaction at these concentrations: 0.15/0.083/0.025/0.144 ng/μL of JAK 1, JAK 2, JAK 3 and TYK2 respectively. After shaking and 1.5 h of incubation at r.t., 20 μL of Stop (10 μL EDTA) and Detection mixture (10 μL Europium-anti-phospho antibody, final: 0.5 nM) were added. Reading was performed after 1 h of incubation on a EnVision 2104 reader (Perkin Elmer).
Calculation of IC50 data, curves and QC analysis was performed by using Excel tool and GraphPadPrism software, v9. Briefly, individual concentration-effect curves are generated by plotting the logarithm of the tested concentration of tested compounds (X) vs. corresponding percent inhibition values (Y) using least squares (ordinary) fit. Best fit IC50 values are calculated using Log(inhibitor) vs. normalized response—Variable slope equation, where Y=100/(1+10{circumflex over ( )}((Log IC50−X)*HillSlope)). QC criteria parameters (Z′, S:B, R2, HillSlope) were checked for every IC50 curve. Calculation of IC50 data, curves and QC analysis were made using Excel tools and GraphPadPrism software. QC criteria parameters: Z′≥0.5, Hill Slope range 0.5 to 5, S:B>2.
Compounds according to the invention (including example 1a-10a and 1-99) show pIC50 values higher than 6 with respect to their inhibitory activity on all JAK isoforms corresponding to <1 μM in terms of inhibitory concentration. Most compounds preferably showed values equal to or higher than 7.3 even more preferably higher than 8.3 at least with respect to their inhibitory activity on JAK1; corresponding to ≤50 nM in terms of inhibitory concentration.
Data for compounds 1-99 are reported in the table hereinbelow
The compounds are classified in the table above, in terms of potency with respect to their inhibitory activity on JAK1, JAK2, JAK3 and Tyk2 isoforms according to the following classification criterion:
Where a numerical limit or range is stated herein, the endpoints are included. Also, all values and subranges within a numerical limit or range are specifically included when not explicitly written out.
As used herein the words “a” and “an” and the like carry the meaning of “one or more.”
Obviously, numerous modifications and variations of the present invention are possible in light of the above teachings. It is therefore to be understood that, within the scope of the appended claims, the invention may be practiced otherwise than as specifically described herein.
| Number | Date | Country | Kind |
|---|---|---|---|
| 21162515.7 | Mar 2021 | EP | regional |
| 21217274.6 | Dec 2021 | EP | regional |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2022/056548 | 3/14/2022 | WO |
