Patent Application
20200031952
Antibodies, also referred to as immunoglobulins (Ig), are soluble blood or interstitial fluid glycoproteins that play a key role in humoral immunity of the Vertebrata. Antibodies are produced by B-cells in response to the foreign biological and chemical substances (antigens) of various structure. Due to high specificity and high affinity to the certain antigen, and to ability of producing antibodies against the unlimited antigen repertoire, antibodies and their derivatives are one of the most important reagents to be used in both fundamental and applied medical research.
Classical antibodies [1, 2] are represented by large multimeric proteins (IgG ˜150 KDa) which comprise two identical heavy H-chains (one variable VH domain, three constant domains CH1, CH2 and CH3, and a hinged domain between CH1 and CH2) and two identical light L-chains (comprising of the variable domain VL and constant domain CL). A four-chain molecule has non-covalent and covalent (disulfide) bonds connecting the chains. Papain protease can be used to break down an antibody molecule into two fragments: Fab (Fragment antigen binding) and Fc (Fragment crystallizable). Therefore, one region of the molecule (Fab) defines its antigen-related specificity, and another region (Fc) exercises the effector functions targeted to antigen elimination [3, 4]. CH1 and CH2 domains of H-chain are spaced by a hinge region that assures the mobility of Fab-region and the interaction of IgG molecule with Ig effector receptors exposed on the cells. CH2 domain contains the regions binding with FcY receptors that mediate the cell activation (ADCC and ADCP) and with complement system molecules (CDC). In addition, this domain contains the site that is an attach point for carbohydrates for all immunoglobulin isotypes. CH3-domain pretty much determines the stability of IgG dimer and interacts with FcRn-receptor on the cell surface establishing the pharmacokinetic properties of antibodies as well as their metabolism and distribution in the body. The combination of complementarity determining regions (CDR) of the variable domain of the heavy chain (VH) and the variable domain of the light chain (VL) forms an antigen-binding fragment, while the framework regions of the variable domains and the constant domains are not directly involved in antigen recognition. A minimized Fab-derivative for classical antibodies is a single-chain construct in which variable domains of the heavy and light chains are connected with a linker sequence (scFv).
Finding of significant amounts of specific non-classical antibodies of simplified structure in the blood of Camelidae animals (camels, llamas, vicunas) was a valuable discovery [5]. Such antibodies (heavy chain antibody, HCAb) consist of a dimeric single shortened heavy chain (without CH1 domain) with no light chain at all. Antigen-binding fragment of HCAb is formed by only one heavy chain variable domain (VHH), which is connected through the hinged region to Fc-domain. Rather often VHH is called a single-domain antibody, “nanobody”, “mini-antibody” or “nano-antibody”. It appeared that in addition to the small size (12-15 KDa), such isolated mono-domain structure has a number of advantages compared to classical IgG antibodies, namely aggregation, chemical and thermal stability. VHH antibodies can be successfully cloned and expressed in bacterial and yeast cells. Having said properties, these antibodies were developed in therapeutic direction by Ablynx Company and in the direction of laboratory and industrial chromatography (CaptureSelect affinity products).
Heavy chain antibodies comprising a dimer of a single Ig heavy chain were first discovered by electrophoretic analysis of immunoglobulins in the serum obtained from various representatives of Camelidae family [5]. The relative fraction of HCAb varies from about 15-25% (of all IgG) in llamas and vicunas to about 60-80% in camels [6].
It is assumed that non-classical HCAb, at least in case of Camelidae, resulted from relatively recent evolution of the genes of classical antibodies. Two heavy chain constant domains, CH2 and CH3, in case of HCAb and classical antibodies are highly conserved. In HCAb there is no domain corresponding to the first constant domain CH1 of classical antibodies. Dromedary genome contains a claster of about fifty VH- and forty VHH-generative genes followed by multiple genes of D-segments, J-segments and genes encoding the constant regions (Cμ, Cγ, Cε and Cα). It is clear that some of Cγ-genes serve to form HCAb (mutations result in the loss of CH1-domain), and others—to form classical antibodies (with remained CH1-domain). The same genes of D- and J-segments may randomly connect to either one of VH-genes or one of VHH-genes. This indicates that VH- and VHH-genes are located in the same gene locus [7-10].
The organization of variable domains of non-classical antibodies (VHH) and variable domains of classical antibodies (VH) is very similar, as human VH-domains of IgG3 subclass have high homology to VH and VHH of Camelidae. In both cases, V-domains comprise four conservative framew ork regions FR surrounding three hypervariable complementary-determining regions (CDR). In addition, in both cases a 3-D structure typical for immunoglobulin V-domain is formed of two β-layers, one of which comprises 4 amino acid sequences and another—of 5 amino acid sequences [11, 12]. All three CDRs in this structure form a cluster on one side of V-domain, where they participate in antigen recognition and are located in the loops connecting β-structures. However, there are several important distinctions related to the functioning of single-domain VHH. Thus, CDR1 and CDR3 of VHH are significantly enlarged. Complementary-determining regions of VHH often contain cysteine residues in two fragments at a time (usually in CDR1 and CDR3, less often—in CDR2 and CDR3). The studies of VHH crystal structures have shown that these cysteine residues form disulfide bonds and provide additional stability to the loop structure of these antibodies [12]. The most strong and reproducible distinguishing feature of VHH is represented by four substitutions of hydrophobic amino acid residues by hydrophilic ones in the second framework region (Va137Phe, Gly44Glu, Leu45Arg, Trp47Gly according to the Kabat numbering [13]). This framework region of VH-domain is highly conservative enriched with hydrophobic amino acid residues and is essential for linking to the light chain variable domain VL. VHH-domain differs greatly in this aspect: substitutions of hydrophobic amino acids by hydrophilic makes the association of VHH and VL impossible. These substitutions also explain the high solubility of VHH (nano-antibody) when it is obtained as a recombinant protein [14].
It appears that the repertoires of paratopes (antigen-binding parts of an antibody) possible for HCAb and classical antibodies may be significantly different. Since these two antibody types co-exist in the same organism, it can be assumed that they do not compete but are complementary to each other. For example, it was repeatedly noted that both antibody types could occur in parallel, exclusively or in different ratios with regard to various epitopes of the antigen material upon immunization of the very same animal. Despite the suspected lower variety of paratopes possible for single-domain antibodies compared to the classical two-domain antibodies, many publications have clearly demonstrated that HCAb can be obtained against the most diverse epitopes of a rather wide range of antigens [15]. Apparently, this is due to enlarged CDR1 and CDR3 regions. We also should note the surprisingly large (compared to V-domains of classical antibodies) number of somatic hypermutations in VHH that are likely to accumulate during the affine maturation of the antibody during the immunization [16]. X-ray diffraction analysis revealed that antigen-binding loop regions of VHH are able to form structures unusual for classical V-domains [12, 16]. In case of VH- and VL-domains of classical antibodies, all six CDRs contribute almost the same to antigen binding; while in case of VHH, CDR3 is usually the most important for the formation of a paratope. It has been shown that CDR3 in VHH (but not in VH or VL) is capable of forming uncommonly long finger-structures that can deepen into the antigen structure and, in particular, detect the active sites of enzymes [12]. Small size of the antigen-binding region of VHH and its ability to form unusual emerging paratopes explain how HCAb can be obtained able to recognize epitopes inaccessible for the classical antibodies (for example, production of antibodies that effectively inhibit enzymes) [17].
For all the high potential of the specificity unique compared to the classical IgG antibodies, the therapeutic use of a single-domain VHH is sometimes limited due to its rapid elimination form the organism. There are several solutions designed to improve the pharmacokinetics of VHH structures, including the chemical conjugation with PEG and covalent binding to polypeptides mediating the reduced clearance (such as HSA or Fc-fusion proteins that possess the half-life of up to three weeks) [18,19,20]. Small peptides attached to VHH by the recombinant technology and capable of high-affinity non-covalent interaction with said components (HSA and IgG) in human blood have been successfully used [21]. However, the technological effectiveness and immunogenicity of these approaches remain questionable, and the feasibility of using thereof in either clinical or earlier study phases is now under investigation.
In addition, the largest limitations of using antibodies as medicinal agents are due to their aggregation and chemical stability affinity and immunogenicity. Since the majority of monoclonal antibodies are obtained on the basis of murine ones, the regular use of such antibodies in humans causes the development of immune response to antibody therapy (for example, allergic reactions). These types of immune response finally result in the lack of efficacy at least, and in potential anaphylactic reactions at worst. From the other hand, aggregation- or chemically unstable therapeutic antibodies reduce the therapeutic properties of the drug product over time and may increase its immunogenicity upon administration to human patients.
According to aforesaid, it is important to develop VHH-based antibodies with improved (in comparison to previously known antibodies) functional and therapeutic features, particularly increased aggregation, chemical and thermal stability and improved affinity, which would at the same time be easily obtained on industrial scale.
The background of the invention provides the information on various antibody constructs containing the VHH domain.
PCT/EP2008/066368 publication describes antibodies that comprise separate variable domains linked with Fc-fragment. Nano-bodies can be used as variable domains with Fc obtained from IgE type antibodies. Said domain and Fc fragments can be connected through a linker located in the hinge domain.
Patent application US 2009/0202979 disclosed antibodies comprising complete VHH antibodies or parts thereof directly connected to the constant regions of human antibodies.
In addition, amino acid substitutions are known that affect the physical-chemical and biological properties of antibodies.
For example, application US 20110028348 describes the heavy chain variable domains wherein amino acid substitutions were introduced in positions 35, 45, 47, 93-100 and 100a to improve the hydrophilic properties of the antibody obtained.
Now, the methods have been developed to optimize the structure of isolated VHH and VH mono-domains in order to reduce the immunogenicity and improve the aggregation stability thereof.
Thus, Vincke at al. [22] have found that Glu-49→Gly and Arg-50→Leu substitutions in characteristic amino acids result in the obtainment of a new domain that is more stable yet less soluble. Other substitutions in the framework region FR-2 Phe-42→Val and Gly/Ala-52→Trp are crucial for antibody affinity to the antigen due to re-orientation of H3-loop, so that the dissociation constant increases 6-10-fold (6.85·10−3 l/sec). Phe-42→Val substitution caused the reduced stability of antibodies obtained. The substitution of Gly-49 and Leu-50 in VH-sequence resulted in the lower stability of the domain, while Glu-49 and Arg-50 humanization in VHH allows obtaining the stable variable domains.
It is known from the literature, that in the presence of short HCDR3 regions neutralizing the shading effect of the conformation of classical VHH, and upon introduction of VH-characteristic Trp-47→Gly-47 substitution as well as Tyr-37→Val-37, Glu-4→Gly-44 and Arg-45→Leu-45, the isolated VHH domains can regenerate the ability to bind with VJ domain [24].
The relationship between the increased aggregation stability of therapeutic antibodies of classical IgG structure and the reduced immunogenicity thereof was demonstrated in multiple studies and summarized in the review by Hermeling et al., 2004 [25]. Yet there were no antibodies revealed that comprise VHH domains but were linked to the variable domains of the light chains within the full-size human IgG.
Therefore, there is a need for development of a new format of antibodies that would have improved stability and affinity, good expression and low immunogenicity
Besides, no approaches were earlier described with regard to the development of such molecules that would be easy to obtain, have improved aggregation stability, increased affinity and high expression level in the mammal cell culture.
According to previously mentioned, this invention is the first to describe antibodies comprising VHH-derivatives that are able to bind to variable domains of the light chains of the full-size human IgG, which results in the formation of a construct that is similar to the native one (and, hence, having low immunogenicity) but has improved aggregation stability, increased affinity, and a structure of a therapeutic monoclonal antibody.
“Monoclonal antibody” as used herein relates to an antibody obtained from llama, chimeric antibody, humanized antibody or fully human antibody, unless otherwise stated in the present application. Monoclonal antibodies according to the invention can be produced using, for example, recombinant technology, phage display technology, synthetic technology or the combinations of these or other technologies well known from the prior art.
“Monoclonal antibody” refers to an antibody obtained from a single copy or a clone including, for example, any eukaryotic, prokaryotic or phage clone, rather than to production method thereof. “Monoclonal antibody” can be an intact antibody (with full or full-length Fc-region), actually intact antibody, an antibody part or fragment comprising an antigen-binding region, for example, Fab-fragment, Fab′-fragment or F(ab′)2-fragment from llama or chimeric, humanized or human antibody. “Fab”-fragment comprises a variable light chain domain and a constant light chain domain as well as a variable heavy chain domain and first constant heavy chain domain (CH1). “F(ab′)2” antibody fragment contains a pair of Fab-fragments which are mostly covalently bound by hinged cysteine residues at C-terminal regions. Other chemical bonds between antibody fragments are also well known from the state of art.
In addition, “monoclonal antibody” as used herein can be a single-chain Fv that can be obtained by binding DNA encoding VHH and VL with a linker sequence. As long as the protein keeps its ability of specific or preferable binding to the target (for example, epitope or antigen), it is covered by the term “antibody”. Antibodies can be either glycosylated or not and are within the frames of the invention.
The term “derivative” or antibody “variant”, as used herein, refers to a molecule the amino acid sequence of which differs from the parental sequence by adding, deletion and/or, substitution of one or more amino acid residues in the sequence of parental antibody. In the preferred embodiment, an antibody contains at least one (for example, from one to about ten preferably 2, 3, 4, 5, 6, 7 or 8) amino acid substitutions in FR- or CDR-regions of the parental antibody. This application defines the identity or homology regarding the sequence of a variant antibody as the percentage of amino acid residues in a variant antibody sequence that are identical to residues in parental antibody after aligning the sequences and, if needed, cutting in order to achieve the maximum percentage identical sequence.
An antibody derivative (from parental one) keeps its ability to bind the same antigen or, preferably, epitope as that with which the parental antibody binds, or, preferably, exhibits at least one property or biological activity exceeding that of the parental antibody. For example, the antibody preferably has a better aggregation stability, more strong affinity, improved pharmacokinetics or increased ability to inhibit the antigen biological activity, compared to parental antibody.
The term “VHH-derivative”, as used herein, refers to the derivatives of VHH antibodies the amino acid sequence of which differs from the sequence of parental VHH antibody by substitution of one or more amino acid residues in the sequence of parental antibody. In the preferred embodiment, VHH antibody contains at least one (for example, from one to about ten preferably 2, 3, 4, 5, 6, 7 or 8) amino acid substitutions in FR- or CDR-regions of the parental antibody.
An antibody derivative keeps its ability to bind the same antigen or, preferably, epitope as that with which the parental antibody binds, or, preferably, exhibits at least one property or biological activity exceeding that of the parental antibody. For example, the antibody preferably has a better aggregation stability, more strong affinity, improved pharmacokinetics or increased ability to inhibit the antigen biological activity, compared to parental antibody.
“Parental VHH antibody” or “initial VHH antibody”, or “wild VHH antibody” as used herein refers to VHH antibody isolated from an immunized or non-immunized Camelidae animal encoded with amino acid sequence that is used to produce a VHH variant. Parental antibody can have a framework sequence originating from Camelidae (with respect to VHH variable domain), but preferably the frame sequence of the light chain variable domain is of completely or substantially human origin.
“Parental”, “initial”, or “wild” antibody as used herein refers to an antibody encoded with amino acid sequence that is used to produce a variant. Parental antibody can have a framework sequence originating from Camelidae (with respect to VHH variable domain), but preferably the frame sequence of the light chain variable domain is of completely or substantially human origin.
As used herein, the term “specifically binds” refers to such a situation in that one party involved in the process of specific binding does not significantly bind molecules other than its specific binding partner (partners). This term also applies if, for example, an antigen-binding site of the antibody according to the invention is specific for particular epitope that is carried by a number of antigens; in this case, the specific antibody with an antigen-binding site will be able to bind specifically with various epitope-carrying antigens. Thus, the monoclonal antibody according to the invention specifically binds to human IL-17 (IL-17A), while it does not specifically bind human IL-17B, IL-17C, IL-17D or IL-17E. Moreover, a monoclonal antibody of the invention specifically binds human IL-17 and IL-17 from cynomolgus monkey, but does not specifically bind neither rat IL-17 nor murine IL-17.
As used herein, the term “preferably binds” refers to such a situation in that an antibody binds a specific antigen at least by 20% more, preferably by about 50%, or 2-fold, 20-fold, 50-fold or 100-fold more than it binds any other antigen, as measured according to the procedures known from the prior art (for example, competitive ELISA or KD measurements obtained using Octet apparatus). Antibody can preferably bind one epitope within an antigen but not bind another epitope of the same antigen. Thus, an antibody of the invention preferably binds human IL-17 but not rabbit IL-17.
As used herein, the term “epitope” refers to the molecule part that can be recognized by and bind an antibody via one or several antigen-binding sites of an antibody. Epitopes often comprise the chemically surface-active groups of molecules such as amino acids or sugar side chains, and have specific 3-D structural characteristics. “Inhibiting epitope” and/or “neutralizing epitope” means an epitope that, as in the context of an intact antigen molecule and binding an antibody specific to said epitope, causes in vivo or in vitro loss or reduction of activity of the molecule or organism that contains the molecule.
As used herein, the term “epitope” also refers to a polypeptide fragment, having antigenic and/or immunogenic activity in animals, preferably in mammals such as mice and humans. The term “antigenic epitope” as used herein is a polypeptide fragment which can specifically bind the antibody and can be detected by any technique well known from the prior art (for example, by means of the standard immunoassay). Antigen epitopes are not necessary immunogenic, but they can possess immunogenicity. “Immunogenic epitope” as used herein is defined as a polypeptide fragment that evokes an antibody response in animals, as determined by any method of the prior art. “Nonlinear epitope” or “conformational epitope” contains nonadjacent polypeptides (amino acids) within the antigen protein, which binds with epitope-specific antibody.
Expressed “functional activity” or “functional characteristics” or the terms “biological activity” or “activity” referring to an antibody according to the invention are interchangeable as used herein, and include but not limited to: epitope/antigen affinity and specificity; ability to neutralize or be an antagonist to IL-17 in vivo or in vitro; IC50; antibody stability and in vivo immunogenicity of the antibody. Other biological properties or antibody characteristics identified from the prior art include, for example, the cross-reactivity (i.e. reaction with non-human homologs of the target peptide or with other proteins or targets) and ability to retain high levels of protein expression in mammal cells. Aforementioned properties or characteristics may be observed, measured or evaluated using the procedures recognized in the prior art, including but not limited to ELISA, competitive ELISA, Octet analysis, neutralization assay in vitro or in vivo without limitation, receptor binding, production and/or release of cytokine or growth factor, signal transduction and immune histochemical study of tissue sections obtained from various sources including humans, primates or any other source.
The population of “monoclonal antibodies” as used herein refers to a homogenous or essentially homogeneous antibody population (i.e. at least or 96%, but more preferably no less than about 97 or 98%, or further preferably at least 99% of antibodies in the population will compete for the same antigen/epitope in ELISA, or further preferably antibodies are identical regarding their amino acid sequences).
A native full-size antibody is represented by immunoglobulin molecule comprising four polypeptide chains (two heavy H chains of about 50-70 KDa for the full length, and two light L chains of about 25 KDa for the full length) linked via disulfide bonds. Amino-terminal part of each chain comprises a variable domain of about 100-110 or more amino acids that are responsible for binding an antigen. Carboxyl-terminal domain of each chain determines the constant region that is mostly responsible for the effector function. Light chains are classified as kappa and lambda and have specific constant regions. Each light chain is characterized in comprising a variable N-terminal light chain region (hereafter referred to as VL or VK) and a constant light chain region that consists of a single domain (CL or CK). Heavy chains are classified as γ, δ, α, μ and ε and define classes of immunoglobulins: IgG, IgM, IgA, IgD and IgE, respectively; some of them can be additionally divided into sub-classes (isotypes) such as IgG1, IgG2, IgG3, IgG4, IgA1 and IgA2. Each heavy chain type is characterized by a specific constant region Fc. Each heavy chain comprises a variable N-terminal region (hereafter referred to as VH) and constant region CH. Constant heavy chain region consists of three domains (CH1, CH2 and CH3) for IgG, IgD and IgA, and of 4 domains (CH1, CH2, CH3 and CH4) for IgM and IgE. VH, VHH and VL can also be divided into so-called hypervariable regions (complementarity determining regions, CDR) interspersing with more conservative framework regions (FR). Each variable domain comprises three CDRs and FRs located in the following order from N-terminus to C-terminus: FR1, CDR1, FR2, CDR2, FR3, CDR3 and FR4.
In the present application, 3 heavy chain CDRs are referred to as “HCDR1, HCDR2 and HCDR3”, while 3 light chain CDR are referred to as “LCDR1, LCDR2 H LCDR3”. CDRs contain the majority of amino acid residues specifically interacting with an antigen. CDR-residues are numbered and positioned in compliance with Kabat Numbering Scheme.
The term “antigen” refers to an antigen target against which an antibody can be reactive; it is used herein in the same way as specialists use it in the this technical field, and includes but is not limited to, polypeptides, peptides, polysaccharides, glycoproteins, polynucleotides (for example, DNA), or chemical antigens, receptors or interleukins. Interleukins can include interleukins of various groups, such as interleukin 1 (alfa and beta), interleukin 2, interleukin 3, interleukin 4, interleukin 5, interleukin 6, interleukin 7, interleukin 8, interleukin 9, interleukin 10, interleukin 11, interleukin 17, interleukin 18 and interleukin 33.
The term “antigen” can also be used to describe the material that is used for immunization of animals (for example, llama) with the purpose of production of antibodies of the invention. In that context, “antigen” can have a broader meaning and may cover purified forms of an antigen as well as non-purified or not fully isolated, or purified antigen products such as cells, cell lysates, or supernatants, cell fractions, for example, cell membranes etc. with added haptens conjugated with a protein-carrier. Antigen used for immunization does not necessary mean an antigen structurally identical to an antigen target to which, finally, an antibody of the invention is able to bind. Usually, antigen used for immunization is a downsized version of an antigen target, for example, a fragment comprising an immunogenic epitope. More details about antigens used for immunization are described in the literature and may be familiar to the specialist in this technical field.
Variable regions of each light/heavy chain pair form antigen-binding sites of an antibody. Thus, an intact IgG antibody has two binding sites. Except for bi-functional or bi-specific antibodies, two binding sites are identical. According to the present application, “antigen-binding region” or “antigen-binding site”, or “antigen-binding domain”, are interchangeable, as used herein, with refer to an antibody region comprising amino acid residues interacting with an antigen and giving the antibody its specificity and affinity to an antigen. This antibody fragment includes the frame amino acid residues necessary for maintaining the proper conformation of antigen-binding residues.
Preferably, CDR of VHH antigen-binding region or the entire antigen-binding region of an antibody of the invention fully originates from Camelidae family or is substantially of Camelidae origin, and comprises specific amino acid residues changed, for example, substituted with various amino acid residues (for example, refer to Table 6) in order to improve the particular properties of an antibody (for example, KD, koff or IC50). Preferably, the antibody framework regions in accordance with the invention are of Camelidae origin or of human origin, or substantially of a human origin (at least by 80, 85, 90, 95, 96, 97, 98 or 99% of human origin), and comply with Kabat numbering.
“Antibody fragment” may be represented by an antibody fragment or antibody fragment that has the activity of a full-size antibody. Said antibody fragment may be represented by F(ab′)2, F(ab)2, Fab′, Fab Fv and scFv.
“Interleukin 17”, also referred to as “IL-17” or “IL-17A”, is a 20-30 kD homo-dimeric glycoprotein. The gene of human IL-17 encodes the protein consisting of 155 amino acids and having a 19 amino acid signal sequence and 136 amino acid mature segment. Amino acid sequence of human IL-17A is by 80%, 63% and 58% similar to amino acid sequences of rabbit, mouse and rat, respectively. Amino acid sequence of human IL-17A is by 97% identical to IL-17A of cynomolgus monkey.
The term “antibody” when applied in relation to anti-IL-17 monoclonal antibody of the invention (hereafter referred to as an “antibody of the invention”), as used herein, means a monoclonal antibody.
As used herein, the terms “inhibit” or “neutralize” regarding to the activity of an antibody of the invention shall mean the ability to block, prevent, restrict, slow down, stop, reduce or reverse significantly, for example, the development or severity of inhibition subject, including but not limited to biological activity (such as activity of IL-17) or property, disease or condition. Binding of an antibody according to the invention with IL-17 results in the inhibition or neutralization of IL-17 activity preferably of at least 20, 30, 40, 50, 60, 70, 80, 90, 95% or higher.
The term “separated” or “isolated” with regard to nucleic acids or protein products (such as an antibody) refers to the nucleic acid molecule or protein molecule that is identified and separated from at least one of contaminating substances to which it is usually combined in the natural source. Preferably, an “isolated antibody” is an antibody that substantially contains no other antibodies that have particular antigenic specificity (for example, pharmaceutical compositions of the invention contain an isolated antibody that specifically binds IL-17A and substantially contain no antibodies that specifically bind antigens other than IL-17A).
The term “Kabat numbering scheme” or “numbering according to Kabat” as used herein refers to the system for numbering of amino acid residues that are more variable (i.e. hypervariable) than other amino acid residues in variable regions of heavy and light chains of an antibody (Kabat et al. Ann. NY Acad. Sci., 190:382-93 (1971); Kabat et al. Sequences of Proteins of Immunological Interest, Fifth Edition, U.S. Department of Health and Human Services, NIH Publication No. 91-3242 (1991)).
Polynucleotide is “functionally bound” if it has functional linkages to other polynucleotide. For example, promoter or enhancer is functionally bound to the coding sequence if it affects the sequence transcription. Polypeptide is “functionally bound” to another polypeptide if polynucleotides coding thereof are functionally bound, preferably if they are located in the same open reading frame.
The term “DNA construct”, as used herein, refers to DNA or its fragment coding an antibody of the invention. Generally, DNA or its fragment that codes an antibody (for example, an antibody of the invention) is functionally (operably) bound, within an open reading frame, to at least one other DNA fragment that codes an additional polypeptide (for example, domain or region of a receptor for another cytokine, such as IL-2-receptor), and then is inserted into an appropriate expressing vector. Normally, DNA constructs are formed in such a way that several DNA fragments coding certain antibody sites are functionally associated within a reading frame to obtain a solid construct that codes either an entire antibody or its functional fragment. For example, DNA construct would encode an antibody from N-terminus to C-terminus. Such antibodies can be expressed, isolated and evaluated regarding their activity.
The term “vector” refers to nucleic acids that were obtained synthetically and via biotechnology and contain a certain and known in the present field set of sequence functional elements. Certain vectors can autonomously replicate in host cells to which they were introduced, while other vectors can integrate into host cell genome and replicate together with the host genome. Moreover, some vectors can mediate the expression of genes to which they are functionally bound. In this application such vectors are called “recombinant expression vectors” (or “expression vectors”); exemplary vectors are well known from the prior art.
As used herein, the terms “cell”, “host cell”, “cell line” and “cell culture” are interchangeable and refer to an individual cell or cell culture that is a recipient of any isolated polynucleotide according to the invention or any recombinant vector (recombinant vectors) that contains the sequence of an antibody of the invention. Host cells involve generations obtained from an individual host cell; generations may not necessary be completely identical (regarding the morphology or full DNA complement) to original host cell due to natural, accidental or intended mutations and/or variations. A host cell includes cells that were transformed, transduced or infected with recombinant vector, or a monoclonal antibody that expresses a polynucleotide according to the invention or its heavy or light chain. Host cell that contains a recombinant vector according to the invention (either incorporated into host chromosomes or not) can also be called “recombinant host cell”. Preferable host cells to be used in the invention are CHO cells (for example, ATCC CRL-9096), NS0 cells, SP2/0 cells, COS cells (ATCC, for example, CRL-1650, CRL-1651) and HeLa (ATCC CCL-2). Additional host cells to be used in the invention include plant cells, yeast cells, other mammalian cells and prokaryotic cells.
The term “Specific binding” between an antibody and an antigen target (antigen) refers to immunological specificity. Antibody can specifically bind an antigen target if it binds an antigen epitope stronger than other antigen epitopes. Specific binding does not exclude the cross-reactivity with other antigens that carry similar antigen epitopes.
VL domains in antibodies of the invention can be either VL lambda type or VL kappa type. The term “VL domain” covers both VL lambda and VL kappa isotypes that contain one or more amino acid substitutions, insertions or deletions.
The term “pharmaceutical composition” covers the formulation and/or composition containing a therapeutically effective amount of an antibody of the invention plus excipients (carriers, diluents, vehicles, solvents and other excipients such as water for injection with a pH that was brought to 5.5 with citric acid, water containing mannitol as a lyoprotectan, etc.).
The term “use” or “treatment” applies to the ability of using an antibody of the invention or a pharmaceutical composition containing thereof to treat, relief the course of the disease, expedite the remission or reduce the recurrence rate for the disease or disorders mediated by receptors with which an antibody of the invention can bind.
The present invention proposes humanized monoclonal antibodies, preferably IgG type, which have an increased affinity and improved aggregation stability, wherein variable domains are represented by a combination of VHH-derivative with a variable domain of the light chain VL.
In one embodiment, VHH-derivative of an antibody of the invention may comprise amino acid substitutions at positions 44X245X3, where X2=G, A, V, S, T; a X3=A, V, T, H; or combinations thereof (44 and 45 designate the positions for amino acid substitutions). Hereinafter the position of amino acid substitution is indicated using Kabat numbering scheme (http://www.bioinf.org.uk/abs/).
Another embodiment involves an antibody of the invention that has improved aggregation stability of VHH-derivative compared to initial IgG antibody comprising VHH isolated from an immunized animal, wherein an immunized animal can be from Camelidae.
Another embodiment of the invention involves an antibody that comprises VHH-derivative that is a variable domain of the heavy chain of an antibody isolated from an immunized animal from Camelidae family. Herein VHH-derivative can have additional amino acid substitutions typical for humans at any positions, except for the following substitutions at positions 44 and 45:
a) 44X2, wherein X2=G, A, V, S, T;
b) 45X3, wherein X3=A, V, T, H;
or combinations thereof.
Another embodiment involves an antibody of the invention that comprises VHH-derivative that can be represented by a heavy chain variable domain isolated from non-immunized animal from Camelidae family. Herein VHH-derivative can have additional amino acid substitutions typical for humans at any positions, except for the following substitutions at positions 44 and 45:
a) 44X2, wherein X2=G, A, V, S, T;
b) 45X3, wherein X3=A, V, T, H;
or combinations thereof.
Another embodiment involves an antibody of the invention that comprises a light chain variable domain VL that is a derivative of a human antibody. In additional embodiment of the invention, the light chain variable domain VL is a humanized fragment of an animal antibody.
Another embodiment involves an antibody of the invention that comprises a VHH-derivative that contains cysteine-44 (Kabat numbering scheme), and a light chain variable domain VL that contains cysteine-100 (Kabat numbering scheme).
Another embodiment of the invention involves an antibody of any of the following isotypes: IgG1, IgG2, IgG3 or IgG4.
Another embodiment involves an antibody of the invention that comprises a non-native modified Fc as a part of IgG.
Another embodiment involves an antibody of the invention that has such aggregation stability that when used in concentrations over 10 mg/ml and stored for >6 months at a temperature of 4° C. the content of aggregates increases by not more than 5% of their initial content in the solution. In additional embodiment of the invention, an antibody has such aggregation stability that when used in concentrations over 10 mg/ml and stored for >2 weeks at a temperature of 37° C. the content of aggregates increases by not more than 5% of their initial content in the solution. Another additional embodiment of the invention involves an antibody that has such aggregation stability that when used in concentrations over 10 mg/ml and stored for >48 h at a temperature of 42° C. the content of aggregates increases by not more than 5% of their initial content in the solution. One more additional embodiment of the invention involves an antibody that has such aggregation stability that when used in concentrations over 10 mg/ml and stored for >6 h at a temperature of 50° C. the content of aggregates increases by not more than 5% of their initial content in the solution.
One embodiment involves an antibody with dissociation constant KD≤10−9 M. Another embodiment involves an antibody of the invention that has an antibody-antigen interaction association constant kon(l/Ms)≥105 l/Ms. One more embodiment of the invention involves an antibody that has a antigen-antibody dissociation constant dis(l/s)≤10−4 l/s.
In addition, the invention suggests an antibody fragment. This antibody fragment can be represented by a light chain, heavy chain, variable domains of the light and/or heavy chain that are a part of an antibody sequence, which includes a bio-specific antibody variant. Another embodiment of the invention involves an antibody fragment that is represented by a light chain, heavy chain, variable domains of the light and/or heavy chain that are parts of Fab. The antibody fragment of the invention may be represented by a light chain, heavy chain, variable domains of the light and/or heavy chain that are parts of scFv.
In addition, the invention suggests the methods of production of antibodies of the invention. Said method of antibody production can involve phases selected from the following: directed mutagenesis, display methods, genetic engineering, biochemistry and high-performance biotechnology methods well known for the art, which can include the methods for directed mutagenesis in different positions of VHH domain of Camelidae antibodies.
In addition, the invention provides a DNA construct encoding the antibodies claimed or fragments thereof, and an expression vector comprising one or several DNA constructs of the invention.
Moreover, the invention suggests a cell line comprising said expression vector or DNA construct.
In addition, the invention suggests the method of production of a humanized monoclonal antibody of fragment thereof, which involves the cell line culture in a culture medium under the conditions sufficient to obtain said antibody or fragment thereof, followed by the isolation and purification of obtained antibody or its active fragment.
Moreover, the invention suggests the pharmaceutical composition that contains an antibody or fragment thereof in combination with one or several pharmaceutically suitable excipients, diluents or carriers. Details of the techniques for composition obtainment are described in special biotechnology guidelines, for example in [25].
Another embodiment of the invention involves an antibody or fragment thereof within an active molecule that specifically binds to human IL-17A, wherein said antibody of fragment thereof comprises a derivative of Camelidae heavy chain variable domain (VHi) that comprises 3 hypervariable regions HCDR1, HCDR2 and HCDR3, wherein:
HCDR1 comprising the amino acid sequence of SEQ ID NO: 1:
G-T-F-A-T-X32-X33-X34-X35 (numbering according to Kabat index), wherein
X32 is an amino acid selected from the group comprising S, N, K, R, E, W, Q, D, A, V and F;
X33 is an amino acid selected from the group comprising P and S;
X34 is an amino acid selected from the group comprising M and I;
X35 is an amino acid selected from the group comprising G, N, S, A, L, I, R, V and Q;
HCDR2 comprising the amino acid sequence of SEQ ID NO: 2:
X50-I-X52-X52a-S-G-X55-D-R-I-Y-A-D-S-V-K-G, wherein
X50 is an amino acid selected from the group comprising A, G and L;
X52 is an amino acid selected from the group comprising S, D and E;
X52a is an amino acid selected from the group comprising P and A;
X55 is an amino acid selected from the group comprising G, S, T, L, R, D, E, K, A and W;
HCDR3 comprising the amino acid sequence of SEQ ID NO: 3:
C-A-X94-X95-X96-X97-F-X99-X100-X100a-X100b-X100c-X100d-X100e-X100f-D-Y-D-S, wherein
X94 is an amino acid selected from the group comprising K, S, T, V, D and G;
X95 is an amino acid selected from the group comprising R and K;
X96 is an amino acid selected from the group comprising G, R, Y, H, D, W and K;
X97 is an amino acid selected from the group comprising R, A, V, S, L and H;
X99 is an amino acid selected from the group comprising D, E, G, A, R, V, K and Q;
X100 is an amino acid selected from the group comprising G, S and N;
X100a is an amino acid selected from the group comprising is an amino acid selected from the group comprising G, T, P, V, R, N and K;
X100b is an amino acid selected from the group comprising V, S, T, L, Y, A, H, G and I;
X100c is an amino acid selected from the group comprising Y, W and S;
X100d is an amino acid selected from the group comprising R, V, L, Y, A, W, K, G, Q and I;
X100e is an amino acid selected from the group comprising T, L, A and S;
X100f is an amino acid selected from the group comprising T, L, G, P, N, A, Q, F, I and D;
b) A variable domain of the light chain (VL) of a human antibody or a variable domain of the light chain of a humanized antibody.
An alternative embodiment involves an antibody or fragment thereof that specifically binds human IL-17A and comprises a derivative of the heavy chain variable domain (VHH) comprising 3 hypervariable regions, wherein:
HCDR1 comprising the amino acid sequence of G-T-F-A-T-S-P-M-G (SEQIDNO: 4);
HCDR2, comprising the amino acid sequence of A-I-S-P-S-G-G-D-R-I-Y-A-D-S-V-K-G (SEQ ID NO: 5);
HCDR3 comprising the amino acid sequence of C-A-V-R-R-R-F-D-G-T-S-Y-Y-T-G-D-Y-D-S(SEQIDNO: 6);
b) A variable domain of the light chain (VL) of a human antibody or a variable domain of the light chain of a humanized antibody.
An alternative embodiment involves an antibody that specifically binds human IL-17A and comprises a derivative of the heavy chain variable domain (VHH) comprising an amino acid sequence of SEQIDNO: 7 and
A variable domain of the light chain (VL) of a human antibody or a variable domain of the light chain of a humanized antibody.
An alternative embodiment involves an antibody or fragment thereof that specifically binds human IL-17A and comprises Vi-derivative, wherein said variable domain comprises an amino acid sequence at least 90% identical to SEQ ID NO: 7.
An alternative embodiment involves an antibody that specifically binds human IL-17A and contains a Vi-derivative comprising the amino acid sequence of SEQ ID NO: 7; and a variable domain of the light chain (VL) of a human antibody comprising the amino acid sequence of SEQ ID NO: 8.
An alternative embodiment involves an antibody or fragment thereof that specifically binds human IL-17A and comprises Vi-derivative and a variable region of the light chain (VL) of a human antibody wherein said variable domains comprise an amino acid sequence at least 90% identical to SEQ ID NO: 8.
An alternative embodiment involves an antibody that specifically binds human IL-17A and contains the heavy chain comprising SEQ ID NO: 9 amino acid sequence, and the variable domain of a human antibody light chain (VL) comprising SEQ ID NO: 10 sequence. Another embodiment involves an antibody that specifically binds human IL-17A and contains the heavy chain and the light chain, wherein said chains comprise amino acid sequences at least 90% identical to SEQ ID NO: 9 and/or SEQ ID NO: 10.
An alternative embodiment involves an antibody of the invention that specifically binds human IL-17A, wherein said antibody has the binding affinity to human IL-17A characterized with KD of ≤10−10 M. Another embodiment involves an antibody that specifically binds human IL-17A, wherein the kinetic association constant kon(l/Ms) for human IL-17A is at least 105 l/Msec. Another embodiment involves an antibody that specifically binds human IL-17A, wherein the kinetic dissociation constant dis(l/c) for human IL-17A is not more than 10−5 l/sec. An alternative embodiment involves an antibody that specifically binds human IL-17A and inhibits the activity of human IL-17A by no less than 50% with respect to any parameter examined by any specific activity testing.
An alternative embodiment involves an antibody that specifically binds human IL-17A, wherein said antibody is produced by mammalian, yeast or bacterial cells.
An alternative embodiment involves an antibody that specifically binds human IL-17A and contains one or more additional amino acid substitutions in Fc-region compared to the native Fc, wherein said substitutions improve physical-chemical and pharmacokinetic properties of an antibody, as compared to an antibody with the native Fc, and do not result in the loss of antibody's ability to bind IL-17A.
An alternative embodiment suggests a DNA construct encoding an antibody that specifically binds human IL-17A. Moreover, the invention suggests an expression vector comprising one or more DNA constructs encoding an antibody that specifically binds human IL-17A. In addition, a host cell was suggested comprising a vector for obtainment of an antibody that specifically binds human IL-17A.
In addition, the invention suggests a method for the production of an antibody that specifically binds human IL-17A, characterized by culturing host cells comprising a DNA construct in a culture medium under conditions suitable to obtain said antibody or fragment thereof, and further isolation and purification of said antibody or active fragment thereof.
Moreover, a pharmaceutical composition was suggested comprising an antibody that specifically binds human IL-17A, and one or more pharmaceutically suitable excipients, diluents or carriers. Said composition can comprise further active pharmaceutical ingredients selected from TNF-α inhibitors. Said composition can be used in the treatment of an IL-17A-mediated disease or disorder. An IL-17A-mediated disease or disorder is selected from: rheumatoid arthritis, osteoarthritis, juvenile chronic arthritis, septic arthritis, Lyme arthritis, psoriatic arthritis, reactive arthritis, spondyloarthropathy, systemic lupus erythematosus, Crohn's disease, ulcerative colitis, inflammatory bowel disease, insulin dependent diabetes mellitus, thyroadenitis, asthma, allergic disorders, psoriasis, dermatitis, systemic sclerosis, graft-versus-host disease, graft rejection, acute or chronic immune disease associated with organ grafting, sarcoidosis, atherosclerosis, disseminated intravascular coagulation, Kawasaki disease, Graves'disease, nephrotic syndrome, chronic fatigue syndrome, Wegener's disease, Henoch-Schonlein purpura, microscopic polyangiitis with renal involvement, chronic active hepatitis, uveitis, septic shock, toxic shock syndrome, sepsis syndrome, cachexia, infections, invasions, acquired immune deficiency syndrome, acute transverse myelitis, Huntington chorea, Parkinson disease, Alzheimer disease, stroke, primary biliary cirrhosis, hemolytic anemia, malignancies, heart failure, myocardial infarction, Addison disease, polyglandular autoimmune syndrome type I and type II, Schmidt's syndrome, acute respiratory distress syndrome, alopecia, alopecia areata, seronegative arthropathy, arthropathy, Reiter's syndrome, psoriatic arthropathy, arthropathy associated with ulcerative colitis, enteropathic synovitis, arthropathy associated with Chlamydia, Yersinia and Salmonella, spondyloarthropathy, atheromatosis disease/coronary sclerosis, atopic allergy, autoimmune bullous disease, pemphigus, pemphigus foliaceus, pemphigoid, linear IgA diseases, autoimmune hemolytic anemia, Coombs positive hemolytic anemia, acquired pernicious anemia, juvenile pernicious anemia, Myalgic encephalomyelitis/chronic fatigue syndrome, chronic active hepatic inflammation, cranial giant arteritis, primary sclerosing hepatitis, cryptogenic autoimmune hepatitis, acquired immune deficiency syndrome (AIDS), AIDS-associated diseases, hepatitis B, hepatitis C, common variable immunodeficiency (common variable hypogammaglobulinemia), dilated cardiomyopathy, female sterility, ovarian insufficiency, Premature ovarian failure, pulmonary fibrosis, cryptogenic fibrosing alveolitis, post inflammatory interstitial lung pathologies, interstitial pneumonitis, connective tissue disease associated with interstitial lung disease, mixed connective tissue disease associated with interstitial lung disease, systemic scleroderma associated with interstitial lung disease, rheumatoid arthrisit associated with interstitial lung disease, systemic lupus erythematosus associated with lung disease, dermatomyositis/polymuositis associated with lung disease, Sjogren disease associated with lung disease, ankylosing spondylitis associated with lung disease, diffuse pulmonary vasculitis, hemosiderosis associated with lung disease, drug-induced interstitial lung disease, fibrosis, radiation-induced fibrosis, obliterating bronchiolitis, chronic eosinophilic pneumonia, lung disease with lymphocyte infiltration, post infectious interstitial lung pathologies, gouty arthritis, autoimmune hepatitis, autoimmune hepatitis type I (classic autoimmune or lupoid hepatitis), autoimmune hepatitis type II (associated with anti-LKM antibody), autoimmune hypoglycemia, type B insulin resistance with acanthokeratodermia, hypoparathyroidism, acute graft-associated immune disease, chronic graft-associated immune disease, osteoarthrosis, primary sclerosing cholangitis, type I psoriasis, type II psoriasis, idiopathic leukopenia, autoimmune neutropenia, NOS-kidney diseases, glomerulonephritis, microscopic renal polyangiitis, Lyme disease, discoid lupus erythematosus, idiopathic of NOS-male sterility, antisperm immunity, multiple sclerosis (all types), sympathetic ophthalmia, pulmonary hypertension secondary to connective tissue disease, Goodpasture syndrome, pulmonary manifestations of polyarteritis nodosa, acute rheumatic fever, rheumatoid spondylitis, Still's disease, systemic scleroderma, Sjogren's Syndrome, Takayasu disease/arthritis, autoimmune thrombocytopenia, idiopathic thrombocytopenia, autoimmune thyroid disorders, hyperthyroid, autoimmune hypothyroidism (Hashimoto disease), atrophic autoimmune hypothyroidism, primary myxedema, phacogenic uveitis, primary vasculitis, vitiligo, acute hepatic disease, chronic hepatic disease, alcoholic cirrhosis, alcohol-induced liver damage, cholestasis, idiosyncratic hepatic disease, drug-induced hepatitis, nonalcoholic steatohepatitis, allergies and asthma, group B streptococcal infection (GBS), mental disorders (including depressions and schizophrenia), Th1- and Th2-mediated disease, acute and chronic pain (various forms), malignancies such as lung cancer, breast cancer, stomach cancer, bladder cancer, colorectal cancer, pancreatic cancer, ovarian cancer, prostate cancer and hematopoietic malignancies (leukemia and lymphomas), abetalipoproteinaemia, acrocyanosis, acute and chronic infections and infestations, acute leukemia, acute lymphoblastic leukemia, acute myeloid leukemia, acute or chronic bacterial infection, acute pancreatitis, acute renal failure, adenocarcinoma, atrial ectopics, AIDS dementia complex, alcohol-induced hepatitis, allergic conjunctivitis, allergic contact dermatitis, allergic rhinitis, allograft rejection, alpha-I antitrypsin deficiency, lateral amyotrophic sclerosis, anemia, angina, anterior horn cell degeneration, anti-CD3 therapy, antiphospholipid syndrome, hypersensitivity reactions against receptors, aortic and peripheral aneurysms, aortic dissection, arterial hypertension, coronary sclerosis, arteriovenous fistula, ataxia, atrial fibrillation (constant or paroxysmal), atrial flutter, atrioventricular block, B-cell lymphoma, bone graft rejection, bone marrow transplant (BMT) rejection, bundle branch block, Burkitt lymphoma, burns, cardiac arrythmia, myocardial stunning syndrome, cardiac tumor, cardiomyopathy, inflammatory response to bypass, cartilage graft rejection, brain cortex degeneration, cerebellar disorder, chaotic or multifocal atrial tachycardia, chemotherapy-induced disorders, chronic myelocytic leukemia (CML), chronic alcohol addiction, chronic inflammatory pathologies, chronic lymphatic leukemia (CLL), chronic obstructive pulmonary disease, chronic salicylate intoxication, rectocolic carcinoma, congestive cardiac failure, conjunctivitis, contact dermatitis, pulmonary heart, coronary artery disease, Creutzfeldt-Jakob Disease, culture-negative sepsis, cystic fibrosis, cytokine therapy-induced disorders, boxer's encephalopathy, demyelinating disease, dengue hemorrhagic fever, dermatitis, dermatological conditions, diabetes, diabetes mellitus, diabetes-related atherosclerotic vascular disease, diffuse Lewy body disease, congestive dilated cardiomyopathy, basal ganglia disease, Down's syndrome in middle age, motor disorders induced by CNS dopamine blockers, drug sensitivity, eczema, encephalomyelitis, endocarditis, endocrinopathy, epiglottiditis, Epstein-Barr viral infection, erythralgia, extrapyramidal and cerebellar symptoms, familial hemophagocytic lymphohistiocytosis, fetal thymus graft rejection, Friedreich's ataxia, peripheral artery disease, fungal sepsis, gas phlegmon, gastric ulcer, glomerulonephritis, any organ or tissue graft rejection, gram negative sepsis, gram positive sepsis, granulomas due to intracellular organisms, hairy-cell leukemia, Hallervorden-Spatz disease, Hashimoto's thyroiditis, hay fever, heart transplant rejection, hemochromatosis, hemodialysis, hemolytic uremic syndrome/thrombotic thrombocytopenic purpura, bleeding, hepatitis (A), bundle branch arrhythmia, HIV-infections/HIV-neuropathies, Hodgkin disease, hyperkinetic motor disorders, hypersensitivity reactions, hypersensitivity-associated pneumonitis, hypertension, hypokinetic motor disorders, examination of hypothalamo-pituitary-adrenal axis, idiopathic Addison's disease, idiopathic pulmonary fibrosis, antibody-mediated cytotoxicity, asthenia, infantile muscular atrophy, aortal inflammation, influenza virus A, exposure to ionizing radiation, iridocyclitis/uveitis/optic neuritis, ischaemia/reperfusion-induced disorders, ischaemic stroke, juvenile rheumatoid arthritis, juvenile spinal muscular atrophy, Kaposi's sarcoma, renal transplant rejection, legionellosis, leishmaniasis, leprosy, corticospinal damage, lipoedema, liver transplant rejection, lymphoedema, malaria, malignant lymphoma, malignant histiocytosis, malignant melanoma, meningitis, meningococcemia, metabolic/idiopathic diseases, migraine, multiple system mitochondrial disorders, mixed connective-tissue disease, monoclonal gammapathy, multiple myeloma, multiple system degeneration (Mencel Dejerine-Thomas Shi-Drager and Machado-Joseph), myasthenia gravis, intracellular Mycobacterium avium, Mycobacterium tuberculosis, myelodysplastic syndrome, myocardial infarction, myocardial ischemic disease, nasopharyngeal cancer, neonatal chronic lung disease, nephritis, nephrotic, neurodegenerative disorders, neurogenic muscular atrophy I, neutropenic fever, non-Hodgkin's lymphomas, abdominal aortic branch occlusion, arterial occlusive disease, OKT3® treatment, orchitis/epididymitis, orchitis/vasectomy reversal operations, organomegaly, osteoporosis, pancreatic graft rejection, pancreatic carcinoma, paraneoplastic disease/tumor-related hypercalcemia, parathyroid graft rejection, pelvic inflammatory disease, perennial rhinitis, pericardial disease, peripheral atherosclerosis (atherlosclerotic) disease, peripheral vascular disease, peritonitis, pernicious anemia, Pneumocystis carinii pneumonia, POEMS syndrome (polyneuropathy, organomegaly, endocrinopathy, monoclonal plasma-proliferative disorder and skin changes), postperfusion syndrome, pump head syndrome, post-cardiotomy post-infarction syndrome, preeclampsia, progressive supranuclear paralysis, primary pulmonary hypertension, radiation therapy, Raynaud's phenomenon and disease, Raynoud's disease, Refsum's disease, regular narrow QRS tachycardia, renal vascular hypertension, reperfusion injury, restrictive cardiomyopathy, sarcoma, scleroderma disease, senile chorea, Dementia with Lewy bodies, seronegative arthritis, shock, sickle cell disease, skin allograft rejection, skin changes, small intestinal graft rejection, solid tumors, specific arrhythmias, spinal ataxia, spinocerebellar degradations, streptococcal myositis, cerebellar structural damage, subacute sclerosing panencephalitis, syncope, cardiovascular syphilis, systemic anaphylaxis, a comprehensive systemic inflammatory response syndrome, systemic-onset juvenile rheumatoid arthritis, T cells or FAB ALL, telangiectasia, thrombosis obliterans, thrombocytopenia, toxicity, grafting, trauma/bleeding, hypersensitivity reactions type III, hypersensitivity reactions type IV, unstable angina, uremia, urinary sepsis, urticaria, valvular heart disease, varicose veins, vasculitis, venous diseases, venous thrombosis, ventricular fibrillation, viral and fungal infections, vital encephalitis/aseptic meningitis, vital hemophagocytic syndrome, Wernicke-Korsakoff syndrome, Wilson's disease, heterograft rejection for any organ or tissue, acute coronary syndrome, acute idiopathic polyneuritis, acute inflammatory demyelinating radicular neuropathy, acute ischemia, adult-onset Stills disease, alopecia areata, anaphylaxis, antiphospholipid antibody syndrome, aplastic anemia, coronary sclerosis, atopic eczema, atopic dermatitis, autoimmune dermatitis, autoimmune disorder associated with streptococcus infection, autoimmune enteropathy, autoimmune hearing loss, autoimmune lymphoproliferative syndrome (ALPS), autoimmune myocarditis, autoimmune premature ovarian failure, blepharitis, bronchiectasis, bullous pemphigoid, cardiovascular disease, catastrophic antiphospholipid syndrome, celiac disease, cervical spondylosis, chronic ischemia, cicatrical pemphigoid, clinically isolated syndrome (cis) with the risk for multiple sclerosis, conjunctivitis, childhood-onset mental disorders, chronic obstructive pulmonary disease (COPD), dacryocystitis, dermatomyositis, diabetic retinopathy, diabetes mellitus, herniated disk, prolapse of intervertebral disc, drug-induced immune haemolytic anaemia, endocarditis, endometreosis, entophthalmia, episcleritis, erythema multiform, severe erythema multiform, gestational pemphigoid, Guillain-Barre syndrome (GBS), hay fever, Hughes syndrome, idiopathic Parkinson's disease, idiopathic interstitial pneumonia, IgE-mediated allergy, autoimmune hemolytic anemia, inclusion body myositis, infectious ocular inflammatory disease, inflammatory demyelinating disease, inflammatory heart disease, inflammatory kidney disease, idiopathic pulmonary fibrosis/usual interstitial pneumonia, iritis, keratitis, keratoconjunctivitis sicca, Kussmaul disease or Kussmaul-Meier Disease, Landry palsy, Langerhans' cell histiocytosis, marbled skin, macular degeneration, microscopic polyangiitis, Bechterew disease, motor neuron disease, mucosal pemphigoid, multiple organ failure, myasthenia gravis, spinal cord dysplasia syndrome, myocarditis, nerve root disorders, neuropathy, non-A, non-B hepatitis, optic neuritis, osteolysis, ovarian cancer, oligoarticular JIA, peripheral arterial occlusive disease, peripheral vascular disease, peripheral artery disease (PAD), phlebitis, polyarteritis nodosa, polychondritis, polymyalgia rheumatica, poliosis, polyarticular juvenile idiopathic arthritis, multiple endocrine deficience, polymyositis, polymyalgia rheumatica (PMR), post pump syndrome, primary parkinsonism, prostate and rectal cancer and hematopoietic malignancies (leukemia and lymphoma), prostatitis, pure red-cell aplasia, primary adrenal insufficiency, relapsing neuromyelitis optica, restenosis, rheumatic heart disease, SAPHO (synovitis, acne, pustulosis, hyperstosis and osteitis), sclerodermia, secondary amyloidosis, shock lung, scleritis, ischias, secondary adrenal insufficiency, silicon-associated connective tissue disease, Sneddon-Wilkinson disease, ankylosing spondylitis, Stevens-Johnson syndrome, systemic inflammation response syndrome, cranial arteritis, Toxoplasma rhinitis, toxic epidermal necrolysis, transverse myelitis, TRAPS (tumor necrosis factor receptor-associated periodic syndrome), allergic reactions type I, diabetes type II, urticaria, usual interstitial pneumonia, vasculitis, vernal conjunctivitis, viral retinitis, Vogt-Koyanagi-Harada syndrome (VKH syndrome), wet macular degeneration, wound healing, and Yersinia- or Salmonella-associated arthropathy.
A pharmaceutical composition comprising an antibody that specifically binds human IL-17A can be administered in a therapeutically effective amount to treat an IL-17A-mediated disease or disorder.
An invention suggests a method for the treatment of an IL-17A-mediated disease or disorder using an antibody that specifically binds human IL-17A. The treatment method can involve further administration of TNF-α inhibitors.
Further examples demonstrate the present invention, yet are not intended to limit the present invention to those examples per se.
Description of the present application includes the references to all information sources.
The Flowchart for Obtainment of VHH-Based Antibodies
Producing Recombinant Antigens and Antibodies in Suspension Mammal Cell Culture
Antibodies and antigens were generated in established cell line obtained from Chinese hamster ovary cells (CHO-K1) according to published protocols [26; 27]. Cells constitutively expressing the gene of EBNA1 protein (Epstein-Barr virus nuclear antigen 1) were used. Suspension culture was conducted in flasks on orbital shaker using serum-free media from Life Technologies Corporation and in accordance with manufacturer's guidelines. For transient expression, cells in a concentration of 2*106/ml were transfected by means of linear polyethyleneimine (PEI MAX, Polysciences). DNA/PEI ratio was 1:3-1:10. In 5-7 days after transfection, cell culture was centrifuged under 2000 g for 20 min and filtered through 0.22 μm filter. Target proteins from culture liquid were isolated by affine HPLC.
Recombinant IL-17A protein containing 6 His amino acids in C-terminal region was isolated and purified from culture liquid on Profinity IMAC Ni-charged resin (Bio-Rad). Prior to purification procedures, NiCl2 was added to culture liquid to a concentration of 1 mM. Then 5 ml of Profinity IMAC Ni-charged was added to culture liquid and mixed on a shaker for 1 h at room temperature. Sorbent was transferred to 5 ml Thermo scientific Polypropylene columns and washed with column volumes of PBS to remove non-specifically bound components. Bound antigen was eluted with 0.3 M imidazole (pH 8) and 150 mM NaCl. Then the protein was dialyzed into PBS (pH 7.4) by means of SnakeSkin Dialysis Tubing technique, filtered (0.22 m), transferred into tubes and stored at −70° C. Purity of the protein obtained was evaluated by SDS-PAGE (
Test and control IgG1 antibodies were purified on 1 ml Hi Trap rProteinA FF column (GE Healthcare) in accordance with the procedure aforementioned for IL-17A-Fc. Purity of the protein obtained was evaluated by SDS-PAGE (
Llama Immunization with Human IL-17A and Generation of Fab-Library of Phage-Displayed Llama Antibodies
Lama Glama was immunized 5 times in succession by means of subcutaneous administration of antigen material mixed with an equal volume of complete (first injection) or incomplete Freund's adjuvant (all injections except for the first one). A mixture of recombinant proteins (0.2 mg of each protein per injection) one of which was human IL-17A (Kit from R&D Systems) was used as an antigen. Second injection (immunization stage) was performed 3 weeks after the first one; three more immunizations were performed with a 2-week interval. Blood samples (50 ml) were collected 5 after each injection starting from the third one.
Drawn blood was 2-fold diluted with PBS containing 1 mM EDTA. Then 35 ml of diluted blood were layered over 15 ml of Histopaque®-1077 medium (Sigma, density of 1.077 g/ml) and centrifuged for 20 min under 800 g. Mononuclear cells (lymphocytes and monocytes) were selected from plasma/Histopaque medium interphase zone and washed with PBS containing 1 mM EDTA.
Total RNA from mononuclear llama cells was isolated using RNeasy Mini Kit in accordance with the protocol (QIAGEN). RNA concentration assay was performed using Nanovue (GE Healthcare); the quality of isolated RNA was tested by means of 1.5% agarose gel electrophoresis.
Reverse transcription reaction was conducted using MMLV RT kit (Evrogen) according to the recommended protocol with MMuLV reverse transcriptase and random hexamer primers.
Reverse transcription products were used as a matrix in a two-stage polymerase chain reaction to obtain the genes of variant domains flanked with restriction sites; reaction was performed using oligonucleotide kit and protocols by [27; 28; 29]. Further, genes encoding variable domains of the light and heavy chains were put together in one fragment by means of sequential reactions of restriction, ligation and amplification as shown in
Selection of Fab-Libraries of Phage-Display Antibodies
Specific anti-IL17A phage-display Fab-antibodies were selected from a phage Fab-display library using a recombinant human IL-17A (a kit from R&D Systems); a series of selection cycles was performed as was described above [27; 31; 32]. To perform the selection process by panning method, human IL-17A in 50 mM carbonate buffer (pH 9.5) was adsorbed overnight at 4° C. on the surface of HighSorb tubes (Nunc). Further, tubes were washed with PBS (pH 7.4) and then blocked with solution containing PBS (pH 7.4)—fat-free milk (0.5% weight/volume) for 1 hour. Then, 2-4 ml of phage solution (1012 phage particles per ml) in PBS (pH 7.4)—fat free milk (0.5% w/vol) were transferred to the tube with the antigen, and the system was incubated for 1 h under stirring. Unbound phages were removed by a series of washing cycles with PBS (pH 7.4)—Tween 20 (0.1% vol./vol.). The number of washing cycles was increased from the first round to the third one—20-30-40 times, respectively. Phage particles that remained bound were eluted with 100 mM Gly-HCl solution (pH 2.5) during 15 min under stirring, and then neutralized with 1 M TRIS-HCl (pH 7.6). E. coli TG1 bacteria were infected with phages obtained; further, phages were isolated and used in the next cycle.
After the second and third round of selection, ELISA performed for the polyclonal phage product has shown the significant enrichment. Pooled clones enriched with human Fab were re-cloned to expression plasmid LL comprising myctag and His6 tag on C-terminus of CHIgene of the heavy chain.
Analysis of Fab Specific Binding with Human IL-17A
ELISA was used to measure the binding of studied Fab-fragments with human IL-17A. Fab with published AIN457 sequence (Novartis) was used as a positive control. ELISA plate wells (Nunc ImmunoMaxisorp) were coated with 50 μl (0.5 μg/ml in 1× coating carbonate buffer) IL-17A-Fc, hermetically closed and incubated overnight at 4° C. All further stages were conducted in accordance with the standard ELISA protocol with high-performance systems such as GenetixQ-pix2×t (Molecular Devices) and Tecan Freedom EVO 200 (Tecan). Non-specific binding was blocked by adding the blocking buffer BB (200 μl 0.5% fat-free milk in PBS). Plates were incubated on a shaker for 1 h at room temperature. After washing with PBS-Tween, each cell was coated with 50 μl of test Fab-containing cell supernatant mixed with the equal volume of BB. Plates were incubated on a shaker for 1 hour at room temperature; further, each plate well was 5 times washed with PBS-Tween buffer. After washing, each well was coated (50 μl/well) with anti-human Fab HRP-conjugated secondary antibody (Pierce-ThermoScientific) in PBS-Tween (1:5000). Plates were transferred to rotation shaker (50 min at room temperature) and then 5 times washed with PBS-Tween buffer as described above. Colorimetric signal was obtained by adding TMB (100 μl/well) until saturated (average of 3-5 min); further color development was blocked by adding the stop solution (100 μl/well, 10% sulfuric acid). Absorbance was measured at 450 nm using an appropriate Tecan-Sunrise plate reader (Tecan). Antibody binding was proportional to the signal produced. Those clones for which the color signal exceeded the baseline signal by more than 5 times were tested in competitive ELISA in order to reveal antagonistic Fab blocking the interaction between IL-17A ligand and receptor.
Competitive ELISA of Blocking the Interaction of IL17A Ligand and IL17R Receptor
Competitive ELISA technique was used to test the antagonistic capacity of previously selected Fab specific against human IL-17A. Fab with published AIN457 sequence (Novartis) was used as a positive antagonist control. Wells ELISA plate (Nunc Immuno Maxisorp) were covered with 50 μl/well IL-17RA-Fc receptor (R&D Systems; 1 μg/ml solution in 1× coating carbonate buffer) and incubated overnight at 4° C. All further stages were performed in accordance with standard ELISA protocols with high-performance systems such as GenetixQ-pix2×t (Molecular Devices) and Tecan Freedom EVO 200 (Tecan). Non-specific binding was blocked by adding the blocking buffer BB (200 μl 0.5% fat-free milk in PBS). Plates were incubated for 1 hour on a shaker at room temperature.
In parallel, 50 μl of test Fab-containing cell supernatant in non-binding 96-well plate were mixed with 50 μl of IL-17A-His6-Flag (0.4 μg/ml in 1% milk diluted with PBS-Tween). The plate was incubated for 1 hour at 37° C. on a shaker under 500 rpm.
After the plate containing IL-17RA-Fc receptor was washed of BB solution, it was coated with the reaction mixture of Fab and IL-17A-His6-Flag in the amount of 90 μl per well. Plates were incubated under shaking for 45 min at room temperature, and each well was 5 times washed with PBS-Tween buffer. Further, 50 μl/well of 1 μg/ml anti-FLAG murine M2 antibody (Sigma) were added, and plates were incubated for 45 min at room temperature. After incubation, each plate well was 5 times washed with PBS-Tween then was coated with 50 μl/well of antimurine-IgG HRP-conjugated secondary antibody (Pierce-ThermoScientific) 1:5000 diluted with PBS-Tween. Plates were incubated on rotation shaker for 45 min at room temperature and 5 times washed with PBS-Tween, as mentioned above. Colorimetric signal was obtained by adding TMB (100 μl/well) until saturated (average of 3-5 min); further color development was blocked by adding the stop solution (100 μl/well, 10% sulfuric acid). Absorbance was measured at 450 nm using an appropriate Tecan-Sunrise plate reader (Tecan). Antibody binding was proportional to the signal produced.
Those clones that demonstrated blocking at the level corresponding to that of control Fab antibody AIN457 were marked as positive and used in further tests. Genes of the variable domains of positive clones were subject to sequencing in accordance with standard protocols on AppliedBiosystems 3130 Genetic Analyzer (Applied Biosystems) followed by appropriate analysis. Clones comprising 3 VHHFab variable domain, corresponding to sequence listings SEQ ID Nos: 11-13 were selected for further studies (
Comparative koff(kdiss)-Screening of Anti-IL-17A VHHFab Candidates
Comparative koff screening for anti-IL-17A Fab-candidates was performed using Pall Forte Bio Octet Red 96 system. Anti-FABCH1 biosensors were rehydrated for 30 min in a working buffer comprising 10 mM PBS (pH 7.2-7.4), 0.1% Tween-20 and 0.1% BSA. 10× working buffer was added to test samples of E. coli supernatants up to 1× final concentration. Then anti-FABCH1 biosensors were steeped into E. coli supernatants containing Fab-fragments of candidate antibodies and incubated for 12 hours at a temperature of 4° C. Sensors coated with Fab-fragments were transferred to wells with working buffer, and a baseline was registered (60 sec). Then sensors were transferred to wells with analyte solution (IL-17A, 30 μg/ml) to achieve the antigen-antibody association (300 sec). After that, sensors were returned into wells with working buffer for further dissociation (300 sec). Used sensors were subject to regeneration after each test: they were three times placed into regenerating buffer (Gly-HCl, pH 1.7) and then were applicable for use in further experiments. The curves obtained were analyzed using Octet Data Analysis (version 7.0) according to the standard procedure with 1:1 interaction model.
Results obtained for koff-screening of anti-IL-17A Fab candidates are presented in
Thus, based on the analytical results obtained, 3VHHVK4B11 candidate was selected for further investigation.
Generation of VHHIgG1 Antibodies with Mutations in FR1 and FR2 of VHH Variable Domain
Genes of the variable domain of the light and heavy VHH chains of 3VHHVK4B1 candidate were cloned in pEE-HcHpEE-Lc plasmid for joint transient expression in CHO-EBNA cells as described in Example 3. Further, substitutions at positions 44 and 45 (Kabat numbering scheme) were introduced by means of oligonucleotide-directed mutagenesis using PfuUltraHS polymerase (Stratagene) in accordance with Protocol [Q5® Site-Directed Mutagenesis Kit (NEB)] and procedure described in [34]. Plasmid pEE-3VHH was used as a matrix. PCR products were fractioned on low-melting agarose and purified on appropriate columns. After ligation, DNA was transformed to E. coli. Upon selection of mutant clones with correct sequences, plasmids with mutations in 3VHH were co-transfected with pEE-LcVK4B11 (refer to
Comparative koff screening for anti-IL-17A VHHFab candidates was performed according to the standard protocol using Pall Forte Bio Octet Red 96 system (refer to Example 8). The significant reduction of koff was found for mut1, mut2 and mut4, and less significant reduction—for mut3, as compared to the native 3VHHFab (
Comparative analysis of aggregation characteristics for anti-IL-17A VHHIgG1 candidates was performed using the following procedure. The preparation of VHHIgG1 antibody (10 mg/ml) in PBS buffer was heated for 6 hours at 50° C. Aggregation induced by thermal stress was evaluated by means of size-exclusion HPLC. The test was performed on 1100 HPLC System (Agilent) using Tosoh TSK-Gel G3000SWXL column, 7.8 mm×30 cm, Cat. No. 08541 with Tosoh TSKgel Guard SWXL pre-column, 6.0 mm×4.0 cm, cm (particles of 7 m, Cat. No. 08543). Isocratic elution with mobile phase containing 50 mM sodium phosphate buffer and 0.3 M NaCl (pH 7.0) was performed under 0.5 ml/min flow rate with the detection at 214 nm and 280 nm wavelengths. Antibody samples were diluted with PBS (pH 7.5) to a concentration of ˜1 mg/ml. Injection volume was 10 μl. Gel filtration standard mixture (Bio-Rad, Cat. No. 151-1901) was used to calibrate the column prior to the test.
Chromatograms presented in
In addition, comparative study of thermal stability of obtained preparations was performed using Thermofluor procedure (also referred to as Thermal shift assay) that determines the protein melting point measuring the changes in the fluorescence of a specific dye SYPROOrange that binds to hydrophobic surfaces of unfolded protein [35]. StepOneReal-TimePCRSystem (Applied Biosystems) apparatus and recommended protocol were used to study the mutant products. The study results are shown in Table 3. They rather correlate to the results obtained in the thermal stress test, which confirms the stability of mut1 and mut4 in comparison to the wild 3VHHIgG1VK4B 11.
Cell Test of Anti-IL17A 3VHHIgG1VK4B11 Mutants Blocking the Ability of IL-17A to Induce IL-6 Production
The ability of IL-17 to induce the production of IL-6 by human HT1080 cells (ATCC:CCL-121) was used to analyze the neutralizing activity of VHHIgG1 candidates mut1 and mut4 regarding human recombinant IL-17A. Cells were grown on DMEM culture medium with added 10% inactivated fetal serum, gentamycin and glutamine. Aliquots of 5*104 cells/well were seeded in 96-well culture plates. Cells were allowed to adhere for 5 hours. The mixture of 40 ng/ml recombinant IL-17 and 20 ng/ml TNF-α was incubated with VHHIgG1 dilutions for 1 hour at 37° C. Then cytokine/antibody mixture was added to the cells and left overnight. The production of IL-6 by HT1080 cell culture was proportional to the amount of IL-17 added. The amount of released IL-6 in cell supernatant samples was evaluated by ELISA technique using DuoSet ELISA Development System Human IL6 (RD System, Cat. No. DY206). Results obtained from evaluation of antagonistic properties of VHHIgG1 candidates are presented in
Engineering of mut4VHHFab Antibodies Comprising Human Light Chains
Total RNA of B-lymphocytes collected from 55 human donors was isolated using RNeasy Mini Kit in accordance with appropriate protocol (QIAGEN). RNA concentration was measured using Nanovue kit (GE Healthcare), and the quality of isolated RNA was tested by 1.5% agarose gel electrophoresis.
Reverse transcription reaction conducted using MMLV RT kit (Evrogen) according to the recommended protocol with MMuLV reverse transcriptase and random hexamer primers.
Reverse transcription products were used as a matrix in a two-stage polymerase chain reaction to obtain the genes of variant domains flanked with restriction sites; reaction was performed using oligonucleotide kit and protocols described in [27]. Chimeric Fab specific against IL-17A were generated according to the procedure described in WO93/06213 based on phagemid pH5, as specified above. Genes encoding variable domains of the human light chains and genes encoding the variable domain of mut4VHH were put together in one fragment by means of sequential reactions of restriction, ligation and amplification as shown in
Selection of phage-displayed chimeric Fab-libraries was performed under the conditions described above (refer to Example 5), except for additional incubation of IL 17A-bound phage antibodies in the presence of 20 μg/ml dissolved IL-17A at a temperature of 37° C. for 12 hours.
After the second round of selection on IL-17A, significant enrichment of the library was observed. Obtained pooled clones of enriched chimeric mut4 VHH Fab-libraries were used in the screening for IL-17A according to the standard protocol (refer to Example 6). Final positive clones were subject to sequencing.
Comparative Analysis of Thermal-Aggregation Characteristics of Full-Size mut4VHHIgG1 Antibodies Comprising Various Light Chain Variants
Genes of the variable domain of the heavy VHH chains of mut4 VHH candidate were cloned in pEE-Hc plasmid, and genes of variable domains of human light chains VK1A7, VK3c18, VK3A4 and VK4E12 were cloned in pEE-Lc plasmid for the joint transient expression in CHO-EBNA cells, as described in Example 3. Further, the obtained antibodies were exposed to the thermal stress and their aggregation profile was investigated as shown in Example 9. Results obtained are presented in a summary tabulation (Table 4).
In addition, the comparative thermal stability study of products obtained was conducted using Thermofluor procedure similar to that described in Example 11. Based on the data obtained, the conclusion can be made that the selected mut4VHH pairs comprising human light chains were more stable than the native variant comprising VVK4B11 llama light chain. Thus, in the comparative study the best aggregation stability parameters were demonstrated for mut4 VHHIgG1VK1A7 and mut4 VHHIgG1VK3c18 combinations.
Cell Test of Blocking the Ability of IL-17A to Induce IL-6 Production Using Mut4 VHHIgG1VK3c8 and Mut4 VHHIgG1VK1A7
The ability of IL-17 to induce the production of IL-6 by human HT1080 cells (ATCC:CCL-121) was used to analyze the neutralizing capacity of VHHIgG1 candidates mut4 VHHIgG1VK3c8 and mut4 VHHIgG1VK1A7 regarding human recombinant IL-17 (refer to Example 12).
For the purpose of further improvement of the aggregation stability, the method of oligonucleotide-directed mutagenesis was used to introduce substitutions at positions 44 and 45 in the FR2 region of VHH for mut4 VHHIgG1VK3c8 candidate (hereafter referred to as m4VHHc8). The study did not include the variants with aromatic, aliphatic or positive amino acids at position 44, as they are potentially immunogenic and structurally forbidden. Mutants were transiently expressed as described in Example 3 (
)
To evaluate the neutralizing activity in the cell test as described in Example 12, experiments were performed with various mutants (
Scanning Mutagenesis of CDRs antiIL17A 3VHH Domain
Mutations to individual positions of candidate's CDRs were inserted by means of NNK randomization technique [26] using Q5® Site-Directed Mutagenesis Kit (NEB) in accordance with the protocol. Plasmid pLL-Fab was used as a matrix. PCR products were fractioned on low-melting agarose and purified on appropriate columns. After ligation, DNA was transformed to E. coli expression strain BL2 gold (Stratagene). The individual clones obtained were then gained by Fab expression in 96-well plates, as described above. Supernatants containing mutant Fab arms were analyzed by ELISA under the conditions described above and using the high-performance Genetix Q-pix2×t and Tecan Freedom EVO200 systems. The concentration of immobilized IL-17A was 0.2 μg/ml. Bound Fab arms were stained with 1:5000 diluted Goat anti-Human IgG (Fab′)2 (HRP) conjugate (Pierce) and TMB+H2O2/H2SO4 dye; absorption was measured at 450 nm wavelength.
Results obtained by scanning mutagenesis are presented in Table 6. The Table shows within-CDR substitutions that correspond to ≤30% reduction of mutant Fab/human I1-17A binding signal when compared to the wild type sequence. Thus, such individual mutants or any combinations thereof are the field of the invention.
Thus, the screening was performed for BCD109 antibody CDR amino acid positions that are tolerant to amino acid substitutions. It was demonstrated that the present panel of amino acid substitutions does not significantly change the antibody affinity to human IL-17A. Said substitution panel can be used to improve various properties of the candidate.
Engineering of BCD109 Candidate and Evaluation of its Affinity to IL-17A of Various Origins
BCD109 antibody was obtained from m4VHHc8 variant comprising 44G45T substitutions (described in Example 16) by introducing humanizing mutations Q5V and R89V to VHH that do not change either the stability or IC50 (no data provided), and three additive mutations in CH2 domain FcIgG1, 232Y/234T/236E, intended to improve the antibody pharmacokinetics. The antibody has been transiently expressed.
The affinity of BCD109 binding to human, monkey and rat IL-17A was investigated on OctetRed 96 system (ForteBio). BCD109 was non-specifically immobilized on the surface of amine reactive second-generation sensors (AR2G) according to the standard protocol described in the manufacturer's manual. The test was conducted at a temperature of 30° C. and using PBS with 0.1% Tween-20 and 0.1% BSA as a working buffer.
Human, monkey and rat IL-17A was titrated with the working buffer from a concentration of 126 nM to 2 nM with an increment of 2.
Binding curves (after subtracting a reference signal) were analyzed using Octet Data Analysis software (Version 7.0) in accordance with the standard procedure and using 1:1 interaction model. The results are presented in
It can be seen that BCD109 binds to human and monkey IL-17A with picomolar affinity (
Determination of the Aggregation Stability of BCD109 Under Thermal Stress
BCD109 preparation of 10 mg/ml in PBS was heated for 6 hours at a temperature of 50° C. in accordance with the protocol described in Example 9.
Results represented in
Obtainment of a Pharmaceutical Composition Comprising the Antibody of the Invention
BCD109 antibody in a concentration of 50 mg/ml was dissolved in q.s. water for injection and pH was brought to 5.5 with citric acid. Solution was filtered (filtration sterilization) and sealed into ampoules.
The product obtained was stable for 6 months with no sedimentation.
Alternatively, BCD109 was dissolved in water containing mannitol as a lyoprotectant, filtered (filtration sterilization) and then subject to freeze-drying. The powder obtained was dispensed to sterile vials. Vials were corked with rubber stoppers and sealed with aluminum caps. The antibody product can be recovered from the lyophilizate with water for injection.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2014138740 | Sep 2014 | RU | national |
The present application is a divisional patent application of U.S. patent application Ser. No. 15/254,225 that claims convention priority to Russian Utility Patent Application No. 2014138740, filed on Sep. 26, 2014, entitled “ VL VHH”. This application is incorporated by reference herein in its entirety. The present application is a continuation of International Patent Application no. PCT/RU2015/000163, filed on Mar. 23, 2015, entitled “HIGH AFFINITY AND AGGREGATIVELY STABLE ANTIBODIES ON THE BASIS OF VARIABLE DOMAINS VL AND A DERIVATIVE VHH”. This application is incorporated by reference herein in its entirety.
| Number | Date | Country | |
|---|---|---|---|
| Parent | 15254225 | Sep 2016 | US |
| Child | 16564148 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | PCT/RU2015/000163 | Mar 2015 | US |
| Child | 15254225 | US |
