Patent Grant
6967095
This invention relates to a human secretory type phospholipase A2; a DNA encoding this protein; a vector having the DNA; a transformant having the vector; a method for producing the protein by using the transformant; an antibody recognizing the protein; a screening method for a compound by using the protein; and a compound obtained by the screening method.
Phospholipase A2 (PLA2; EC 3.1.1.4) is a general term of phospholipids-cleaving enzymes that hydrolyze the 2-acyl ester bond of 3-sn-phosphoglyceride. PLA2 is involved in the digestion of phospholipids in food and the generation and metabolism of phospholipids in the cell membranes. In addition, PLA2 plays as a rate-limiting enzyme of the arachidonic acid cascade in the production of lipid mediators including prostaglandins. It has been known that various types of PLA2s exist in mammals. PLA2s are classified into 4 different families, such as the secretory PLA2, cytosolic PLA2, Ca2+-independent PLA2, and platelet-activating factor-acetylhydrolase, based on the localization, Ca2+ requirement, and substrate specificity (Balsinde et al., J. Biol. Chem. 272, 16069-16072 (1997)).
Among them, secretory PLA2 family comprises PLA2 enzymes that are secreted into the outside of the cells and have a relatively low molecular weight (13,000-15,000). As the member of the family, 5 types including IB type, IIA type, IIC type, V type, and X type, have been already identified. Each molecule has 12 to 16 Cys residues that form disulfide-bonds in the molecule, and possesses a consensus active site consisting of His-Asp residues. In addition, the molecules have a common Ca2+ binding region. Micro mole order of Ca2+ concentration is required for the exertion of the enzyme activity (Tischfield et al., J. Biol. Chem., 272, 17247-17250 (1997), Cupillard et al., J. Biol. Chem., 272, 15745-15752 (1997)).
It is assumed that IB type has a function as a digestive enzyme in the pancreas etc. and is involved in the progression of inflammation, such as endotoxin shock, through the binding to its specific receptor. It is also assumed that IIA type plays a role in various inflammatory responses because this type is expressed in blood platelets and synovial cells etc., and its expression is elevated during stimulation of inflammatory cytokines. However, the inflammatory response is normal in genetically IIA-deficient mice. Thus, its pathological significance remains unresolved. V type is expressed in the heat and several inflammatory cells. X type is expressed in the tissues related to the immunity such as spleen and thymus. Although it is suggested that both types are involved in the bio-regulation and inflammatory response, their importance in the body is not clearly identified (Hanasaki et al., Cell Technology, 17, 694-701 (1998)).
The object of this invention is to provide a novel type of human secretory phospholipase A2; a DNA encoding the protein of this invention; a vector comprising the DNA of this invention; a transformant having the vector of this invention; a method for producing human secretory type phospholipase A2 by using the transformant of this invention; an antibody specifically recognizing the protein of this invention; a screening method of a compound by using the protein of this invention; and a compound obtained form the screening method.
In the process of intensive studies regarding the physiological function of mouse X type PLA2, the inventors found the presence of partial sequence with homology to mouse X type PLA2 in Expressed Sequence Tags (EST) database. Based on the partial sequence, they found a DNA sequence encoding novel secretory type PLA2 protein from mouse spleen cDNA library. Further, the inventors found out a DNA sequence encoding human secretory type PLA2 protein (IID type) from human spleen cDNA library, to accomplish this invention.
The invention relates to:
The protein of this invention is “A protein which comprises an amino acid sequence from first Gly to 125th Cys of that shown in SEQ ID No.:27”. Preferable is “A protein which comprises an amino acid sequence from −20th Met to 125th Cys of that shown in SEQ ID No.:27”. “A protein which comprises an amino acid sequence from first Gly to 125th Cys of that shown in SEQ ID No.:27” means a mature protein. “A protein which comprises an amino acid sequence from −20th Met to 125th Cys of that shown in SEQ ID No.:27” is an immature protein that has a signal peptide. The protein of this invention also includes “A protein which comprises the amino acid sequence as described above, in which one or more amino acid residues are substituted, deleted, inserted, or added, and has a secretory type phospholipase A2 activity”. Number or site of “substitution, deletion, insertion, addition of amino acid residue” is not limited, if the modified protein has the same activity as the protein consisting of the amino acid sequence shown in SEQ ID No.:27. In this invention, “phospholipase A2 activity” means “phospholipid-cleaving activity that hydrolyzes 2-acyl ester bond of 3-sn-phosphoglyceride in a Ca2+-dependent manner”.
Although these mutations in the amino acid sequences can be caused naturally by mutation or modification after transcription, artificial modification can also be caused by the DNA of this invention. The protein of this invention includes all proteins which are encoded by modified DNA have the characteristics as mentioned above regardless of the cause or mean of these modification/mutation.
The DNA of this invention means “a DNA encoding the protein of this invention”. As the DNA of this invention, a DNA encodes the mature protein and comprises a base sequence from 89th G to 463rd C of that shown in SEQ ID No.:26 is preferably given for example. More preferably, a DNA encodes the immature protein and comprises a base sequence from 29th A to 463rd C of that shown in SEQ ID No.:26 is given for example. A DNA that hybridizes to the DNA of this invention under the stringent condition and encodes the protein having a secretory type phospholipase A2 activity is also included in the DNA of this invention. “A DNA that hybridizes to the DNA of this invention under the stringent condition” can be obtained by using the DNA of the encoding region as a probe. “Hybridize under the stringent condition” means that positive hybridizing signal can be observed after heating at 42° C. in 6×SSC, 0.5% SDS and 50% formamide solution and washing 68° C. in 0.1×SSC, 0.5% SDS solution.
Using the DNA of this invention, a production of the recombinant protein can be performed based on textbooks and references such as Molecular Cloning etc. More concretely, a transcription initiation codon is added at upper stream of the DNA to be expressed, and a transcription stop codon is added at down stream of the DNA. A regulator gene such as a promoter sequence (Ex. Trp, lac, T7, SV40 initial promoter) which controls transcription is also added. The expression plasmid, which can replicate and work in the host cells, is prepared by insertion of the DNA into an appropriate vector (ex. PBR322, pUC19, pSV•SPORT1 etc.).
The transformant is obtained by insertion of the expression vector into host cells. As a host cell, procaryotes such as E. coli, monocellular eukaryotes such as yeast, and cells derived from multicellular organisms such as insects and mammals are given for examples. Mammal's cells are preferable. As a mammal's cell, CHO cell, 293 cell, COS-7 cell are given for example.
The antibody of this invention is an antibody against the polypeptide of this invention or peptide fragment that can compose the epitope, and includes both of polyclonal antibodies and monoclonal antibodies. Secretory type PLA2 is involved in the release of fatty acids (ex. arachidonic acid). Excess release of fatty acids cause various diseases such as septic shock, adult respiratory distress syndrome, pancreatitis, bronchial asthma, allergic rhinitis, rheumatoid arthritis, etc. It is possible to diagnose these diseases by the evaluation of a concentration of secretory type phospholipase A2. The antibody of this invention provides a diagnostic agent and an assay kit for secretory type phospholipase A2-related diseases. If the antibody inhibits a PLA2 activity, the antibody itself can be a therapeutic agent for the diseases caused by PLA2.
This invention mainly relates to a novel human secretory type phospholipse A2.
Explained below are a preparation method for the protein of this invention, a preparation method for the antibody, and a screening method for the compound which inhibits the phospholipase A2 activity as below. Unless otherwise mentioned, for example, gene recombinant, production methods for a recombinant protein using animal cells, insect cells, yeast and E. coli, separation and purification methods for the expressed protein, analysis method, immunological means, technologies well-known in this field, can be used to this invention.
The DNA Sequence Encoding the Secretory Type PLA2 of this Invention
The DNA of this invention can be produced or obtained based on the sequence information described in this invention by general gene engineering-technique (Molecular Cloning 2d Ed, Cold Spring Harbor Lab. Press (1989) so on). More specifically, cDNA library is prepared by conventional methods from appropriate sources expressing the DNA of this invention, and the DNA clone is selected from the library using specific probes or antibodies (Proc. Natl. Acad. Sci., USA., 78, 6613 (1981); Science, 22, 778 (1983) so on). Examples of the cDNA source are cells and tissues that express the DNA of this invention or cultured cells derived from these cells or tissues. Separation of total RNA, separation and purification of mRNA, obtaining cDNA and it's cloning can be performed by conventional methods. The commercially available cDNA libraries such as Clontech library can also be used.
The screening method for the DNA of this invention from the library is not limited, and can be performed by conventional methods. Available methods are as follows: an immunological screening for the corresponding cDNA clone using a specific antibody for the protein encoded by the cDNA, a plaque hybridization using a probe that selectively binds to the objective DNA, a colony hybridization and so on and combination of these methods. DNA Probes used in these methods are chemically synthesized based on the information of the DNA sequence or a fragment of the obtained DNA of this invention. Also sense/antisense primers designed from the information of the sequence can be used for cloning probes.
DNA/RNA amplification by PCR method (Science, 230, 1350 (1985)) can suitably be used for obtaining the DNA of this invention. If it is difficult to obtain the full length cDNA from the library, various methods such as RACE (Rapid amplification of cDNA ends; Experimental Medicine, 12(6), 35 (1988)) can be supplemented. The primers used for the PCR method can be designed based on the sequence information of the DNA clarified by this invention. Such primers can be synthesized by conventional methods. Isolation and purification of the amplified DNA/RNA fragments can also be performed with conventional method descried above. For example, it can be performed by gel electrophoresis etc. The DNA or various fragments obtained at the above methods can be sequenced by dideoxy method (Proc. Natl. Acad. Sci., USA., 74, 5463 (1977)), Maxam and Gilbert method (Methods in Enzymology, 65, 499 (1980)) or by using a sequencing kit etc.
Hereafter, the DNA cloning method of this invention is described.
(1) Sequence Determination of the DNA Encoding the Mouse Secretory Type PLA2
A sequence determination method for the DNA fragment encoding mouse secretory type PLA2 which corresponds to human secretory type PLA2 of this invention is described below. Finding out a sequence homologous to mouse X type PLA2 is firstly done. Next step is preparing primers on the basis of the sequence. And finally, PCR is performed using cDNA library originated mouse spleen as a template. By sequencing the obtained DNA fragment, the DNA fragment encoding mouse secretory type PLA2 can be determined.
(A) Isolation of a Novel PLA2 cDNA Fragment and Analysis of Expression Pattern in Mouse Tissues
In order to analyze the gene from which a DNA fragment is originated and function of a protein encoded by the gene, it is necessary to isolate cDNAs which connect to 5′ terminus and 3′ terminus of this fragment and to confirm the sequence integrity. For this purpose, it is advantageous to use tissues with high expression level of the gene.
The existence of the expression and its level among tissues can be analyzed by a hybridization with radio-labeled DNA fragment (probe) with mRNAs extracted from each tissue immobilized on a sheet (Northern hybridization). It is necessary to obtain a PLA2 cDNA fragment used as a probe for comparing the quantities in mouse tissues. Such a fragment can be isolated by PCR using primers prepared based on the sequence of EST database and using a cDNA sample originated from mouse tissues as a template. The northern analysis was performed by the obtained cDNA fragment (SEQ ID No.:1). The result indicated clearly that the gene is highly expressed in mouse spleen.
(B) Isolation of Full Length cDNA Encoding Mouse Secretory Type PLA2
For example, upper stream sequence including 5′ terminus of the cDNA and down stream sequence including 3′ terminus of the cDNA can be obtained by PCR with so called RACE method: Rapid Amplification of cDNA End. Oligomer pairs used in the PCR consist of one PLA2-specific primer, and the other that corresponds to adapter sequence which is added on the 5′ and 3′ end of the cDNA. Marathon-ready cDNA (Clontech) originated mouse spleen can be used as a cDNA sample. DNA sequence having mouse secretory type PLA2 gene and the amino acids sequence encoded by the gene obtained by the method are shown in SEQ ID No.:13 and 14, respectively.
(C) Isolation of Full Length cDNA Encoding Human Secretory Type PLA2
Generally, it is expected that the same gene have high sequence homology between mouse and human. It is expected that the amino acids residues conserved in PLA2s originated from various animals (consensus sequence) of which primary structure has been determined are also conserved in the novel PLA2. Therefore, the cDNA sequence corresponding to the consensus sequence would have high homology with cDNA of human type PLA2 and this region will be useful for the cloning of human homolog based on the mouse PLA2 sequence information. Furthermore, the mouse cDNA sequence of this invention has high homology with IIA type. It can be predicted that the human secretory type PLA2 gene of this invention also has high homology with IIA type. Based on the above assumption, the oligomers were designed by the consensus sequence conserved in these PLA2 and partial sequence corresponding to human secretory type PLA2 was cloned by PCR using human genomic DNA (Boehringer Mannheim) as a template. For example, upper stream sequence including 5′ terminus of the cDNA and down stream sequence including 3′ terminus of the cDNA can be obtained by PCR with RACE method described above. The oligomer pairs used in the PCR consist of one PLA2-specific primer, and the other corresponds to adapter sequence which is added on the 5′ and 3′ end of the cDNA. Or it can be obtained by PCR using human cDNA library as a template based on mouse PLA2 cDNA sequence which can be expected to have high homology with human counterpart. Marathon-ready cDNA of human small intestine which is expected to express highly was used as a template. DNA sequence having human secretory type PLA2 gene and the amino acids sequence encoded by the gene obtained by the method are shown in SEQ ID No.:26 and 27, respectively.
Preparation of the Protein of this Invention
(1) Expression of a Recombinant Type PLA2 Protein
The protein of this invention can be obtained as a recombinant protein by genetic engineering means (Science, 224, 1431 (1984); Biochem. Biophys. Res. Comm., 130, 692 (1985); Proc. Natl. Acad. Sci., USA., 80, 5990 (1983) etc.). More specifically, a gene encoding a desired protein is inserted into an appropriate vector. A transformant is obtained by incorporating the vector into host cells. A recombinant protein can be obtained by the culture of the transformant.
Both eucaryote and procaryote can be used as host cells. The eucaryote's cells include cells of vertebrate and yeast etc. COS cell (Cell, 23, 175 (1981)) of ape and ovarian cell of a Chinese hamster so on are used as the vertebrate cells.
An expression vector which has a promoter located in upper stream of the gene aimed for expression, splice junction of RNA, polyadenylation region and transcription end sequence so on can be used. And the vector may have a replication origin if it is necessary. As an example for the expression vector is pSV2dhfr (Mol. Cell. Biol., 1, 854 (1981)) having SV40 early promoter etc. As a eucaryotic microorganism, yeast, especially Saccharomyces yeast, is widely used. pAM82(Proc. Natl. Acad. Sci., USA., 80, 1 (1983)) having promoter for acid phosphatase gene etc. can be used as the expression vector for yeast.
As a host of a procaryote, E. coli or Bacillus subtilis are widely used. If these cells are used as a host, it is preferable to use plasmid vector which is replicable in the host and contains a promoter for expression of an objective gene at upper stream of the gene, SD sequence, initiation codon necessary for starting protein synthesis. As a host, E. coli K12 strain etc. is used. As a vector, generally pBR322 and it's derivative are used. It is not limited to these host/vector system. Various kinds of known strains and vectors can also be used. As a promoter, trp promoter, 1pp promoter, 1ac promoter, PL/PR promoter, etc. can be used.
As an insertion method of a desired recombinant DNA into host cell and a transformation method, various general methods are employable. The obtained transformant can be cultured according to general methods and the desired protein can be produced by the culture. As a medium used for the culture, appropriate medium can be selected from various kinds of commonly used medium according to a host cells. For example, the transformant can be prepared by an insertion of the vector comprising human secretory type PLA2 gene of this invention at down stream of pSVL SV late promoter and the recombinant secretory type PLA2 protein can be produced by a culture of the transformant at 37° C. for 3 days under the existence of 5% CO2.
The recombinant protein can be separated and purified by various separating procedures utilizing its physical and chemical characteristics, etc. (Biochemistry, 25(25), 8274 (1986); Eur. J. Biochem., 163, 313 (1987) etc.). For such separating method, extraction by salt, centrifugation, osmotic shock method, ultrasonication, ultrafiltration, gel filtration, various kinds of liquid chromatography such as adsorption chromatography, ion exchange chromatography, affinity chromatography, or high performance liquid chromatography, dialysis, and combination of these method are applicable examples.
(2) Preparation of Variant
Amino acid sequence can be changed with deletion/insertion at any position. The methods known as protein engineering can be widely applicable to the substitution of the amino acids sequence. Site-directed deletion method (Nucl. Acids Res., 11, 1645, (1983)), Site-specific mutagenesis method (Zoller, M. J. et al., Methods in Enzymol., 100, 468, (1983), Kunkel. T. A. et al., Methods in Enzymol., 154, 367-382, (1987)), PCR mutation method, method using restriction enzyme and synthesized gene, etc. are the applicable examples.
Using site-specific mutagenesis inducing method described in Sambrook, J. et al., Molecular Cloning: A Laboratory Manual 2nd, No. 1-3, Cold Spring Harber Laboratory Press publication New York (1989) or PCR method as a Site-specific mutagenesis method, mutations can be introduced into the DNA sequence of this invention.
By using appropriate vector and host strain, the DNA sequence mutated by these methods can be expressed with genetic engineering method described such as in Sambrook, J. et al., Molecular Cloning: A Laboratory Manual 2nd, No. 1-3, Cold Spring Harber Laboratory Press publication New York (1989). Several kits such as Mutan™-SuperExpress Km, Mutan™-K (Takara shuzo), Quick Change Site-Directed Mutagenesis Kit (Stratagene) can be used.
Generally, site-specific mutagenesis method can be performed by obtaining a single strand vector including the sequence encoding the protein. Oligo nucleotide primer with desired mutation in the sequence can be produced by general synthesis method, such Crea's method (Crea, R. et al., Proc. Natl. Acsd. Sci. U.S.A., 75, 5765, 1978). Annealing of this primer with the single strand vector having this DNA sequence is performed, then reaction with DNA polymerase such as E. coli polymerase I Klenow flagment is followed to complete the synthesis of the mutated strand. Hetero double strands comprising one strand encoding non-mutation sequence and another strand having desired mutation are formed. Appropriate bacteria or cells are transformed by this double strand vector. The clone is selected by hybridization of radioactivity probe consisted of 31P-labeled mutated sequence-including primer (Wallace, R. B., Nucleic Acids Res., 9, 3647, 1981). Selected clone contains the recombinant vector having mutated sequence. After the selection of such clone, the region encoding mutated protein can be inserted into an expression vector for transformation.
Hereafter, variants can be produced by the host cells according to the preparation method of the recombinant protein shown in (1).
Determination of Secretory Type PLA2 activities
The determination of PLA2 activities of the recombinants and the variants obtained above was carried out by the following method.
The antibody against the protein of this invention can be produced by the following methods.
(1) Preparation of Polyclonal Antibody
Peptides synthesized by a usual peptide synthesizer based on a part of the deduced amino acids sequence are used as immunogen. Alternatively, protein produced by bacteria, yeast, insect cells and mammalian cells, which are transformed by the expressing vector encoding the protein into, can be purified by general protein chemical method and also used as immunogen. Thus, the polyclonal antibody that specifically recognizes the protein can be easily prepared and purified. Using this immunogen, animals are immunized according to the appropriate method described in Antibodies; A Laboratory Manual, Lane, H. D. et al., Cold Spring Harber Laboratory Press publication New York 1989. For example, polyclonal antibody is prepared from the serum of the immunized animals, such as mouse, rat, hamster, and rabbit.
(2) Monoclonal Antibody
Lymphocytes are isolated from spleen or lymph node of the immunized mouse or rat with the immunogen as described above. Hybridomas are prepared by fusion of the isolated lymphocyte and myeloma cells according to Kohler and Milstein's method (Nature, 256, 495-497(1975)). Monoclonal antibody can be produced from the hybridoma. For example, the monoclonal antibody against the protein of this invention can be obtained by the following steps:
In this invention, the protein of this invention can be assayed by using the monoclonal antibody against the protein. Any kind of assay using the antibody against the protein of this invention is applicable, if the assay determines the quantity of antibody corresponding to the antigen quantity (ex. Quantity of the protein of this invention) in the assay solution, or the quantity of antibody-antigen complex by the chemical or physical methods, and calculates them by the standard curve prepared by using the standard solution containing a known quantity of the antigen. For examples, nephelometry, competition method, immunometric assay, and sandwich method can be adapted.
For the immobilization of the antigen or the antibody, the chemical binding generally useful for immobilization of the protein or enzyme can be used. As a carrier, insoluble polysaccharides such as agarose, dextran, or cellulose, or synthetic resins such as polystyrene, polyacrylamide, silicon, or glass are given for examples.
In the sandwich method, the quantity of the protein in assay solution can be determined by the following steps.
There is no need that the immobilized antibody is the same as the labeled antibody. For example, if the immobilized antibody recognizes the N-terminus of the protein, the labeled-antibody that recognizes C-terminus of the protein can be used.
Radioisotope, enzyme, and fluorescent substance can be used as a labeling agent. As a radioisotope, 125I, 3H, 14C etc. can be used. As an enzyme, peroxydase, β-galactosidase, β-glucosidase, alkaline phosphatase, etc., can be used.
By using these assay, if the concentration of the protein is excess, it is possible to diagnose or diagnose patients with the diseases such as septic shock, adult respiratory distress syndrome, pancreatitis, external injuries, bronchial asthma, allergic rhinitis, rheumatoid arthritis, etc.
Therefore, the antibody of this invention provides “Diagnostic reagent” and “Assay kit” which can be useful in the diagnosis of these diseases.
Screening Method for a Compound that Specifically Inhibits PLA2 Activity
As a “Screening method” of this invention, high through put screening with the protein of this invention is given for example. For example, samples, phospholipid substrate (racemic diheptanoyl thio-phosphatidylcholine) and color-developing reagent (5,5′-dithiobis (2-nitrobenzoic acid)) are added into 96-well plate according to the Reynolds's method (Anal. Biochem. 204, 190-197(1992)). After the addition of the protein, the wells were incubated at 40° C. for the appropriate time, and the change of absorbance (OD at 405 nm) is measured. The inhibiting activity of the sample for this secretory type PLA2 can be evaluated by comparing with the value obtained in the absence of the sample.
Compound Obtained from the Screening Method
Secretory type PLA2 is involved in the release of fatty acids (ex. arachidonic acid). Excess release of fatty acid causes various diseases such as septic shock, adult respiratory distress syndrome, pancreatitis, external injuries, bronchial asthma, allergic rhinitis, rheumatoid arthritis. The compound obtained from the screening method inhibits the activity of secretory type PLA2. Therefore, the compound is useful for the therapy of diseases including septic shock in which the excess production of secretory type PLA2 is involved.
The compound includes pharmaceutically acceptable salts. The salt is prepared by well-known methods. Non-toxicity alkaline metal salt, such as sodium, potassium, litium, calcium, magnesium, and barium, alkali earth metal salt, and ammonium salt, etc. are included.
A pharmaceutical preparation is made with a pharmacologically effective quantity of the compound as an active ingredient. As a medication unit form of the pharmaceutical preparation, various kinds of form can be selected according to an object of therapy. As a solid dosage form, tablet, pill, powder, epipastic, granule, capsule, etc. are included. And as a liquid dosage form, solution, suspension, emulsion, syrupus, elixir, etc. are included. These are classified into oral agent, non-oral agent, nasal agent, vaginal agent, suppository, sublingual agent, ointment, etc. according to the dosage route. Preparation and molding can be performed according to the general methods.
The dosage forms of the pharmaceutical preparation as described above are not limited and these are determined according to each preparation form, age of subjects, sex, state of a disease or other condition. For example, tablet, pill, granule, capsule, solution, suspension, and emulsion are given through oral. An injection agent is used by itself or as the mixture with a general fluid replacement such as dextrose or amino acids, and given through vein. Moreover, injection is given into muscle, skin, abdominal cavity or under skin, if necessary.
The effective quantity of the invention compound should be comprised in the pharmaceutical preparation as mentioned above and its dosage is not limited. It is chosen according to the effect of desired therapy, the dosage method, the duration of therapy, the age of subject, sex, and the other conditions. Generally, the dosage is about 1-10 mg per 1 kg body weight a day. The preparations can be given in one to several divisions per day.
The antibody of this invention inhibits the PLA2 activity of the secretory type PLA2 of this invention via the specific binding to PLA2 of this invention. Therefore, the antibody of this invention, as well as the compound obtained from the screening method of this invention, are useful for the therapy of diseases, such as septic shock, in which excess production of secretory type PLA2 is involved.
The invention is explained in more detail by the following examples.
General experiment protocols used in each step in this invention follow Current Protocols in Microcular Biology (F. M. Ausubel et al. Ed., John Wiley & Sons. Inc.). DNA oligomers are purchased from International Reagents Corp. (Kobe, Japan). Data analysis was performed with GENETYX-SV/RC of Software Development Inc. (Japan). Determination of DNA sequences was routinely performed with several clones in order to eliminate the effects of misincorporation that might be caused in the PCR reactions.
cDNA fragment that can encode the PLA2 detected in EST database is shown as SEQ ID No.:1 at Sequence Listing. This sequence is a fragment. It is required to isolate the undetected cDNAs connected with 5′ terminus and 3′ terminus of the fragment and to reconfirm the fragment sequence at the same time for the analysis of the fragment-originated gene itself and the function of the protein encoded by the gene. For the cloning the full length cDNA, it is favorable to use the tissues in which the gene is highly expressed. In order to compare the quantities of the gene expression levels among the mouse tissues by Northern analysis, it is required to obtain a PLA2 cDNA fragment available for the probe. Such PLA2 cDNA fragment can be isolated by PCR using cDNA samples derived from mouse tissues as templates.
Short DNA oligomers shown in SEQ ID No.:2 to 5 were prepared based on the DNA sequence shown in SEQ ID No.:1. A relative positioning of these DNA oligomers are shown in
cDNA samples were prepared from reverse transcription of mRNA extracted from mouse tissues (brain, heart, kidney, spleen, stomach, etc.) of 129/Svj strain. Using these cDNA samples as templates, PCR was performed using oligomers of SEQ ID No.:2 and 3. TaKaRa Ex Taq (Takara Shuzo, Japan) was used as an enzyme, and composition for PCR reaction was followed to the instruction of the enzyme. As an amplification device, Thermal Cycler (Perkin Elmer Cetus) was used. The amplification was performed at 94° C. for 1 min, 55° C. for 1 min, and 72° C. for 3 min for 30 cycles. After the reaction was completed, second PCR was performed using 1 μl of the reaction solution as template with oligomers of SEQ ID No.:4 and 5. The reaction condition was same as the first PCR. The solution of the PCR reaction was applied to 1.2% agarose gel electrophoresis and the amplified products were separated. The DNA of the expected size was amplified from the cDNA originated with all tissues.
The DNA was cut out from the gel. Purification of DNA was performed using GenElute Agarose spin column (spelco). The DNA was ligated with pCRII vector (Invitrogen), and E. coli SURE strain (Stratagene) was transformed with the ligation solution. The obtained recombinant E. coli was cultured, and plasmid DNA was prepared by GFX micro Plasmid Prep Kit (Pharmacia Biotech). The sequence inserted into the vector was determined with PRISM 310 Genetic Analyzer (PE Applied Biosystems). The result indicated that the DNA consisted of the sequence corresponding to SEQ ID No.:1 was amplified by the PCR.
The existence and its level of the expression in tissues can be analyzed by a hybridization with radio-labeled DNA fragment (probe) with mRNAs extracted from each tissue immobilized on a sheet (Northern hybridization). The purified DNA fragment after the PCR amplification was labeled with Prime-It II (Stratagene). Using this fragment as a probe, the hybridization was performed with mouse Multiple tissue northern blot (Clontech). Autoradiography was performed after the washing with the solution containing appropriate concentration of salt. The result indicated that the PLA2 mRNA was highly expressed in spleen among the tissues examined, and the existence of two types of mRNAs consisting of 1.2 kb and 2.4 kb.
Up stream including 5′ terminus and down stream including 3′ terminus of the cDNA can be isolated by the following method utilizing the information of known portion (central part) of the cDNA. Several antisense oligomers and sense oligomers are prepared according to the known sequence. cDNA including unidentified part can be amplified using cDNA samples which has attached adapter DNAs at the end of cDNA. Oligomer pairs consisted of a oligomer corresponding to the adapter-specific sequence and a PLA2 specific oligomer are used.
Mouse spleen Marathon-ready cDNA (Clontech) was used as a cDNA sample. Oligomers used for the RACE method were shown in SEQ ID NO.:6 to 10. Among them, SEQ ID No.:6, 7, and 8 are antisense oligomers for isolating 5′ up stream, and SEQ ID No.:9 and 10 are sense oligomers for isolating down stream.
RACE method was performed by Nested PCR as same as PCR amplification of the central portion. For 5′ side RACE, the oligomer of SEQ ID No:6 and oligomer AP-1 attached with RACE kit (Clontech) were used at the first RACE, and the oligomer of SEQ ID No.:7 and oligomer AP-2 (Clontech) were used at the second RACE. For 3′ side RACE, the oligomer of SEQ ID No.:9 and AP-1 were used at the first RACE, and the oligomer of SEQ ID No.:10 and AP-2 were used at the second RACE. TaKaRa Ex Taq (Takara Shuzo, Japan) was used as an enzyme. The first amplification was performed at 94° C. for 1 min, 60° C. for 1 min, and 72° C. for 2 min for 30 cycles, the second amplification was performed at 94° C., for 1 min, 62° C. for 1 min, and 72° C. for 2 min for 30 cycles. After the PCR, the amplified products were separated by electrophoresis. A band of about 220 base pair was detected by 5′RACE and a band about 950 base pair was also detected by 3′ RACE. The cloning of these DNAs were performed as the same way of Example 1 and the sequences were determined.
A new antisense oligomer (SEQ ID NO.:8) was prepared for 5′ side RACE from the sequences determined in the process so far. The PCR was performed by using SEQ ID No.:8 oligomer instead of the SEQ ID No.:7 oligomer at the second nested-PCR, and the clone including upper region was obtained.
Three parts of PLA2 cDNA were isolated separately. Those are upper region, central part, and down-stream region. To confirm that these cDNAs are derived from one integral gene, oligomers shown at SEQ ID NO.:11 and 12 were prepared and the PCR was performed using Marathon-ready cDNA (House spleen, Clontech) as a template. Native Pfu polymerase (Stratagene) was used as an enzyme. The amplification was performed at 94° C. for 1 min, 60° C. for 1 min, 72° C. for 4 min for 30 cycles. The amplified DNA was cloned as same as described above, and the sequence was determined. The determined cDNA sequence is shown at SEQ ID No.:13 and the amino acids sequence encoded by the cDNA is shown at SEQ ID No.:14.
From the length of the cDNA encoding the protein, it is clear that the number of amino acid residues of the PLA2 protein is 145. This protein possesses all structural features (central part for PLA2 activity, sequence of Ca2+ binding part, number of Cys residues) conserved among the secretory type PLA2 family molecules. However, this protein consists of a different sequence from any of known secretory type PLA2s, and homology at the amino acids level are 40.0% with mouse IB type, 46.3% with mouse IIA type, 40.0% with mouse IIC type, 41.4% with mouse V type, and 37.6% with mouse X Type, respectively.
Generally, it can be expected that same gene of mouse and human have high sequence homology each other. Therefore, it was expected that the completely conserved amino acid residues (consensus sequence) of which primary structures are known from various animals are conserved in the novel PLA2. From these insights, it was considered that the cDNA sequence corresponding to the consensus sequence in mouse cDNA sequence determined at Example 3 would have high homology to human PLA2 and this region is useful for the cloning of human homolog based on the mouse PLA2 gene information. Four oligomers were designed on basis of the above-mentioned assumption.
Two oligomers of SEQ ID No.:17 and 18 were prepared on the basis of cDNA sequences corresponding to 40th Thr to 46th Lys and 47th His to 53rd His shown in SEQ ID No.:13. And oligomers (SEQ ID No.:19 and 20) were also prepared on the basis of cDNA sequence corresponding to 83th Trp to 89th Cys and 79th Asp to 85th Glu shown in SEQ ID No.:13. The human PLA2 that has high homology to mouse PLA2 was isolated with high sensitivity and high specificity by Nested-PCR as described in Example 1 using these oligomers. First PCR was performed using oligomers of SEQ ID No.17 and 19. Using the amplified products as templates, second PCR was performed with oligomers SEQ ID No.:18 and 20. The first and second PCR were performed at 94° C. for 1 min, at 45° C. for 1 min, at 72° C. for 3 min for 30 cycles and the other condition was as same as Example 1. Marathon-ready PCR cDNA (Human spleen, Clontech) was used for the first PCR as a template. The amplified product consisted of about 120 base pairs detected after the electrophoresis.
cDNA fragment of 117 base pairs would be amplified by two rounds of PCR, if the amplified products were mouse PLA2 based on the mouse sequence. Therefore, it was expected that the product obtained by using the human cDNA as a template would be a novel cDNA fragment of human PLA2. This fragment was cloned as same as Example 1 and the sequence of the fragment was determined. The sequence (76 base pairs originated from human cDNA sample located between the oligomers of SEQ ID No.:18 and 20) is shown in SEQ ID No.:21. This fragment was expected to be a part (central part) of novel human PLA2 cDNA, because this fragment has 71% homology to the corresponding region of mouse PLA2 cDNA, and an amino acid sequence encoded by this fragment has characteristic residues of secretory type PLA2.
cDNA of the upper stream including 5′ terminus and the down stream including 3′ terminus were isolated by RACE method. The experiment was conducted on the condition described in Example 3 and Marathon-ready PCR cDNA (Human spleen, Clontech) was used as a template. Two antisense oligomer sequences for isolating upper stream and two sense oligomer sequences for isolating down stream are shown in SEQ ID No.:22 to 25. After the RACE, DNA fragments of about 350 base pairs at 5′ side and about 600 base pairs at 3′ side were obtained and the sequence was determined. The central part, the 5′ part, and the 3′ part have continuity and the connected sequence is shown at SEQ ID No.:26.
From the length of the cDNA encoding the protein, the number of amino acid residues of the PLA2 protein is 145. This protein (SEQ ID No.:27) conserves all structural features (central part of PLA2 activity, sequence for Ca2+ binding part, and number of Cys residues) conserved among secretory type PLA2 family molecules. However, this protein consists of a different sequence from any of known secretory type PLA2s, and homology of the amino acids sequence is 34.8% with human IB type, 47.6% with human IIA type, 40.7% with human V type, and 33.9% with human X type.
PCR was performed by using the oligomers of SEQ ID No.:15 and 16 or SEQ ID No.:28 and 29, and using the cDNAs of mouse and human secretory type PLA2s as the templates, and the cDNA sequence encoding the region of the amino acids (the cording region) was amplified. The oligomers shown in SEQ ID No.:15 and 28 have a sequence recognized by the restriction enzyme NotI and a sequence (Kozak sequence) that promotes the transcription from mRNA to protein. The oligomers shown in SEQ ID No.:16 and 29 have a sequence recognized by the restriction enzyme XbaI. There is no sequence recognized by the restriction enzyme NotI or XbaI within the cording region. Therefore, after the digestion of PCR-amplified cDNA fragments with these restriction enzymes, the cDNA corresponding to the cording region can be prepared. It has the Kozak sequence at upper stream of the transcription starting point and the cutting edges of NotI or XbaI on the upper terminus and the down stream terminus of the cDNA, respectively.
The PLA2 expressing vector was prepared by insertion of this cDNA into pcDNA 3.1(+) (Invitrogen) at the down stream of its promoter in the right direction (the sites between NotI and XbaI sites). The base sequence from the promoter to PLA2 cDNA was determined again to confirm the absence of artificial mutation. Then, the PLA2 expressing vector was inserted into COS-7 cells, the established cell line originated from monkey kidney. Transfection was performed with LipofectAMINE transfection reagent (Gibco BRL) according to the method of the manufacture's instruction. At three days after the transfection, PLA2 activities in the culture supernatant and the cell lysates were measured. Measurement of PLA2 activities was carried out according to the Elsbach et al.'s method (Methods Enzymol. 197, 24-31 (1991)) using 3H-oleate-labeled E. coli membrane phospholipid fractions as the substrate. Significantly high PLA2 activities were detected in the culture supernatant compared with the supernatant in the cultured cells in which a control plasmid with no cDNA of the PLA2 were transfected (FIG. 2). In addition, high concentration of Ca2+ was required for the exertion of the enzymatic activities (FIG. 3).
Inhibitory activity against this novel type of human secretory type PLA2 was determined with Indoxam that is a 1-oxamoylindolidine derivative. It has already been reported that Indoxam inhibits the enzymatic activities of IIA type and IB type secretory type PLA2 (Yokota et al., Biochim. Biophys. Acta (1999) 1438, 213-222). The PLA2 activities were determined by the measurement of the quantity of released 14C-oleic acid from 14C-labeled 1-palmitoyl-2-oleoyl-phosphatidylcholine (POPC), according to the Draheim et al.'s method (J. Med. Chem., (1996) 39, 5159-5175). In the solution composed of 50 mM Tris-HCl (pH 8.0), 200 mM NaCl, 2 mM CaCl2, and 1 mg/ml bovine serum albumin, the substrates composed of 1 mM POPC (the mixture of about 100,000 cpm -C-POPC and unlabeled POPC) and 3 mM deoxycholic acid were incubated with each secretory PLA2 in the presence of various concentrations of Indoxam at 40° C. for 60 min. Then, the quantity of released -C-oleic acid was measured. Purified materials were used in the case with human IB type (2 ng), IIA type (10 ng) and X type (4 ng). Human V type and the secretory type PLA2 of this invention (IID type) were prepared from the culture supernatant of CHO cells that stably express them.
The quantity of released 14C-oleic acid from 14C-POPC by each human secretory type PLA2 in the absence of Indoxam was regarded as 100% and the quantity of released 14C-oleic acid in the presence of each concentration of Indoxam was shown as %. As the result, it was conformed that Indoxam strongly inhibits the enzymatic activities of both human PLA2 of this invention (IID type) and IIA type (
This invention provides human secretory type PLAN; a DNA encoding human secretory type PLA2; a vector including the DNA; a transformant having the vector; a method for producing human secretory type PLA2 using the transformant.
An analytic mean for this secretory type PLA2-related diseases and a screening mean for a specific inhibitory compound against this enzyme are provided by using the secretory type PLA2 of this invention. An assay using an antibody for the enzyme can be applied to the diagnosis of various diseases.
| Number | Date | Country | Kind |
|---|---|---|---|
| 10/349608 | Dec 1998 | JP | national |
This application is a Divisional of U.S. Ser. No. 09/856,486, filed Jun. 11, 2001, now allowed as U.S. Pat. No. 6,756,219, which is a national-stage filing under 35 U.S.C.§371 of PCT/JP99/06844, filed Dec. 7, 1999. This application also claims priority to JAPAN 10/349608, filed Dec. 9, 1998.
| Number | Date | Country |
|---|---|---|
| WO 0024911 | May 2000 | WO |
| Number | Date | Country | |
|---|---|---|---|
| 20050074861 A1 | Apr 2005 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 09856486 | US | |
| Child | 10646758 | US |
