This invention relates generally to processes for creating or producing diene molecules, nonexclusively including isoprene and butadiene. A preferred embodiment provides a hybrid chemical-biological (chem-bio) process to that effect.
Dienes including isoprene and butadiene are predominantly produced from light naphtha cracking. In that process, narrow boiling range (71-104° C.) light naphtha is fed to an ethylene cracker with high-pressure hydrogen at high temperature and pressure (e.g., 500° C., 50 atm). Isoprene and butadiene are produced as minor compounds during ethylene production. Butadiene and isoprene may be separated from the process stream with elaborate separation schemes, such as multiple distillation steps. As an example, for a cracker of 1 MMTPA ethylene, only 20,000 tonnes of isoprene is co-produced. This corresponds to a paltry 2% yield.
Pyrolytic gasoline production applies steam cracking of heavy naphtha or light hydrocarbons, such as propane or butane, to produce ethylene. The yield is a liquid by-product rich in aromatic content called pyrolysis gasoline. This process also co-produces Isoprene at 1% or lower yield. Isoprene may be separated from the mixture via solvent extraction and distillation.
Certain other processes have been at an R&D level for many years, but are not yet feasible on a commercial scale. These R&D processes include pentane conversion, propylene dimerization & cracking, butene hydroformylation, acetone-acetylene reaction, isopentane double dehydrogenation, and isobutene-formaldehyde reaction. Obstacles in the way of commercialization include very low selectivity and low yields (isopentane dehydrogenation), high severity of operation, expensive feedstock (formaldehyde, acetone), hazardous operations (acetylene), and high capital costs (butene hydroformylation).
Multiple methods for producing a complete biologic pathway to isoprene have been known since the mid 1990's. Initially inventors isolated and cultured microorganisms that naturally produced isoprene (as disclosed in U.S. Pat. No. 5,849,970A), followed shortly thereafter by the transfer of a plant based isoprene synthase gene into bacteria (as disclosed in WO1998002550A2). More recently, companies such as Goodyear Tire and Rubber Co., DuPont, and Danisco US Inc. have developed variants of the isoprene synthase gene for more efficient production in microbial systems (see US20140234926A1, WO2010031077A1, and US20140128645A1). In all these cases, the base metabolic pathway harnessed was the mevalonate pathway. Despite 20 years of work on isoprene production through the mevalonate pathway, it is believed that no one has investigated a hybrid biologic-chemical approach to producing isoprene.
U.S. Pat. No. 7,985,567 discloses methods for bio-synthesis of branched 5-carbon alcohols, the entire disclosure of which is hereby incorporated by reference as though set forth herein in its entirety.
The present invention provides a process for production of diene molecules. In particular, one exemplary such process includes the steps of deconstructing a carbon-bearing biomass to form monomeric sugars called biomass hydrolysate, fermenting a broth containing biomass hydrolysate with an engineered organism that expresses a desired precursor alcohol operable as a building block for one or more target diene molecules, separating the alcohol from the fermented broth, and catalytically converting the alcohol into one or more diene molecules.
In the drawings, which illustrate what are currently regarded as the best modes for carrying out the invention and in which like reference numerals refer to like parts in different views or embodiments:
A method according to certain principles of the invention is shown in
Operable feedstock material, or biomass 102, nonexclusively includes hexose, pentose, cellulose, hemicellulose, cellobiose, glycerol, lactose, sucrose, woody biomass, corn stover, wheat straw, forestry residue, farm waste, and purpose-grown energy crops. Exemplary purpose-grown energy crops include sorghum, miscanthus, and switchgrass. Operable woody biomass further includes all trees, plants and shrubs. Another operable carbon source includes municipal solid waste. Other feedstock candidates include glycerol, mixture of hydrogen and carbon monoxide, methane, methanol and/or hydrocarbons.
The fermentation step 115 may be aerobic or anaerobic performed in a stirred or non-stirred vessel. The fermentation step 115 may further include solid-state fermentation.
Organisms used for the fermentation step 115 nonexclusively include one or more organism that may be selected from prokaryotic and eukaryotic organisms. Useful organisms for the fermentation step 115 may include but are not limited to bacteria, yeast, fungi, archaea, cyanobacteria, insect, plant, and mammalian cells. An operable organism for the fermentation step 115 may include gram-positive bacterial cells, gram-negative bacterial cells, filamentous fungal cells, algae cells, and yeast cells. Certain operable organisms for the fermentation step 115 may be selected from Escherichia sp. (E. coli), Panteoa sp. (P. citrea), Bacillus sp. (B. subtilis), Yarrowia sp. (Y. lipolytica), Saccharomyces sp. (S. cerevisiae), Pichia sp. (P. pastoris), Trichoderma sp. (T. reesei), Aspergillus sp. (A. oryzae or A. niger), Klebsiella sp. (K. oxytoca or K. pneumoniae), Streptomyces sp. (S. lividans or S. californicus), Clostridium sp. (C. ljungdahlii), Enterobacter sp. (E. aerogenes), Aerobacillus sp. (A. polymyxa), Lactococcus sp. (L. lactis), Paenibacillus sp. (P. polymyxa), Serrati sp. (S. marcescens), Candida sp. (C. rugosa), Geobacillus sp. (G. thermoglucosidasius), Serratia sp. (S. plymuthica), Pyrococcus sp. (P. furiosus), Corynebacterium sp. (C. glutamicum), and Pseudomonas sp. (P. aeruginosa). It is generally preferred that the organism(s) used in the fermentation step is/are engineered to increase production of a desired target alcohol over its/their wild or pre-engineered condition.
A workable separation step 125, to separate alcohol product from fermentation broth, may nonexclusively include one or more of the following procedures: distillation, filtration, solvent extraction, membrane separation, pervaporation, absorption, adsorption, vacuum distillation and/or use of adducts. In case of solvent extraction being one of the separation procedures, exemplary solvents that can be used for extraction nonexclusively include methyl iso-butyl ketone, methyl ethyl ketone, acetone, ethanol, propanol, hexane, butyl acetate, ethyl acetate, benzene, toluene, xylene, N-Methyl-2-pyrrolidone, glycerol, glycol, cyclohexane, chloroform, dichloromethane, ethyl acetate, dimethyl formamide, acetonitrile, dimethyl sulfoxide and butanol.
Conversion of product alcohol to the corresponding diene can be performed by catalysis in a continuous stirred tank or packed bed reactor. The catalysis step 130 can be performed in the temperature range of between about 30° C. and about 500° C. and pressure range of between about 1 atmosphere and 10 atmospheres of pressure. It is generally preferred to incorporate a catalyst to improve rate of product diene production. The various catalysts that enable the alcohol-to-olefins conversion include, but are not limited to catalysts selected from: zeolites, supported transition metals, supported noble metals, supported rare earth metals, supported mixtures of transition, rare earths, and/or noble metals. Catalyst transition metals include Fe, Co, Cu, Zn, V, Ni, Ti, Cr, Mn, Re, Y, Zr, Mo, and Ta. Catalyst rare earth elements include La, Ce, Gd, Sc, Pr, Nd, Sm, Eu, Pr, Tb, Dy, Ho, Er, Tm, Yb and Lu. Catalyst noble metals include Pt, Pd, Rh, Ru, Au, Ir and Ag. Operable supports nonexclusively include: zeolites, alumina, silica and carbon. Other operable catalyst types include ion exchange resins. The catalysts can further be physical mixtures of more than one catalyst, catalyst and support, or support and support.
The production of 5-carbon alcohols (methylbutenol) from E. coli leverages the mevalonate pathway co-expressed with several synthetic enzymatic steps resulting in isopentenyl pyrophosphate (IPP) as an intermediate molecule. IPP is commonly used by cells as a precursor in the synthesis of quinones, cell membrane molecules, and higher order terpenes in some organisms. From these synthetic pathways, it is possible to favor production of 3-methyl-3-butenol or 3-methyl-2-butenol depending on the specificity and kinetics of the isomerase (IPPI) selected (see
Since methylbutenols are not a natural product of E. coli, the pathway to their synthesis is desirably engineered and placed within a production E. coli organism. A 7-step pathway starting from acetyl-CoA and ending at methylbutenol was placed on two separate plasmids and transformed into an E. coli host. Extensive modification of the pathway was undertaken in order to yield a balanced pathway, which does not accumulate large fractions of any intermediate compounds that can have negative effects on the health of the cells and the upstream enzymes. The resultant production organism is termed strain 3A. The engineered pathway encompasses the mevalonate pathway transferred into E. coli with added hydrolase NudB to convert IPP to methylbutenol. Plasmid organization includes variants of the first 3 steps termed “top” and next two steps termed “bottom”. A second high copy number plasmid contains the last two enzymes NudB and PMD which remained unchanged.
An initial strain of E. coli was demonstrated capable of producing 1.5 g/L from 10 g/L of glucose, which equates to a 46% yield compared to the theoretical maximum. The initial strain was obtained from Lawrence Berkeley National Laboratory (LBNL) for minimal media and biomass hydrolysate tolerance testing. Subsequently, an additional strain with changes in the promotor sequences and ribosome binding sites of several of the genes to further balance the engineered pathway resulted in a strain capable of producing 2.23 g/L from 10 g/L of glucose termed KG1R10. The increased expression level obtained equated to 70% of the theoretical pathway yield. These results were obtained using rich media and the model carbon source pure glucose in shake flask culturing. The challenge was to increase the titer while maintaining efficiency of conversion and transferring the producing organism into minimal media and an industrial carbon source such as woody biomass hydrolysate. Additional engineering that was performed on the two strains included knockouts of half of the acetate producing pathway (gene ackA) and complete knockout of the lactate producing pathway in separate organisms. A marked reduction in acetate accumulation can be seen in strain 3A in
Wild type Klebsiella oxytoca is known to produce high concentration of BDO, however with poor carbon yield. The metabolic diagram is shown in
Redirecting carbon flux: Metabolic engineering of K. oxytoca has been performed to eliminate competitive pathways for lactic acid and ethanol production thereby directing significantly higher flux to BDO. Elimination of ldhA and aldA genes has been performed to enhance BDO productivity. The Kan/FRT protocol was used to knock out genes originally developed by Datsenko and Wanner (Datsenko, Kirill A., and Barry L. Wanner. “One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products.”Proceedings of the National Academy of Sciences 97.12 (2000): 6640-6645, hereby incorporated by this reference as a portion of this disclosure), however other knockout procedures can be used including CRISPR/Cas9, zinc finger nucleases, or other DNA or RNA based silencing or knockout procedures.
Overexpression of BDO pathway genes: An operon for BDO synthesis, budRABC, from K. pneumoniae is used to overexpress budA, budB, budC, and budR genes, to improve BDO productivity. These four genes are cloned as an operon into the pTrc99A vector (see
Adaptation of K. oxytoca towards inhibitor tolerance: It has been demonstrated that certain K. oxytoca strains are tolerant to commonly occurring polyaromatic inhibitors in biomass hydrolysate.
Glucose is usually utilized as a feedstock for bacterial fermentation. Use of woody biomass hydrolysate, with a mixture of C6 and C5 sugars, has been demonstrated. Industrially produced biomass hydrolysate was obtained from a third party. Initial feasibility was demonstrated by using glucose as a model sugar. However, for commercial feasibility, the bioprocessing should utilize hydrolysate to be cost competitive with chemical routes of synthesis.
Though the original development of the strains for the production of 5-carbon alcohols was performed in rich media with the ideal carbon source pure glucose, the conversion to a minimal media formulation and industrial carbon sources was vital for the ability to scale up the technology. Initially the carbon source and concentration was varied using the rich media as a base. Glucose was tested against fructose and glycerol as the different carbon sources are known to often affect the metabolites produced from each organism. Glucose was shown to be the most effective carbon source with fructose and glycerol generating significantly less titer of methylbutenol per gram supplemented. Multiple minimal medias were also attempted and compared to LB media and EZ rich media, which are the rich media standards, including M9 minimal media (M9), enhanced M9 minimal media (eM9), 3-morpholinopropanesulfonic acid (MOPS) minimal media (modified Neidhardt), and enhanced MOPS minimal media (eMOPS). The goal was to shift to a minimal media for culturing with minimal loss in methylbutenol titer achieved using rich media. Each of the minimal mediums along with EZ rich were supplemented with 10 g/L of glucose as a carbon source.
Following strain development, media formulation, and industrial feedstock tolerance testing, the process was scaled up to a 10 L reactor to determine initial operating parameters and ensure methylbutenol production could be maintained in a fermentation environment. The initial operating parameters were determined through previous experience in a variety of expression systems including manufacture of BDO from K. oxytoca and free fatty acids from E. coli. Temperature of the culture was set at 30° C. as lowering the culture temperature from 37° C. often aids in plasmid stability and increased expression. Agitation and airflow rates were chosen to simulate the best-case scenario in shake flask testing. The fermenter controller was set to maintain a pH of 7.0 through addition of 25% ammonium hydroxide as is often optimal for E. coli expression systems. Any excess foam was controlled via the addition of 1% antifoam 204. The nutrient and carbon source starting conditions were cloned from the highest expressing shake flask culture systems. Feeding was achieved through constant addition of biomass hydrolysate at a rate of approximately 1 g/L/hr, but was adjusted as necessary to maintain a glucose concentration between 1 g/L and 10 g/L. Glucose concentration was periodically measured via glucometer during the fermentation and HPLC after the completion of the fermentation. Complicating this task is the toxic effect of the phenolic and polyaromatic hydrocarbons that are typically present in biomass hydrolysate. The buildup of these compounds alters the metabolism of the production organism leading to changing glucose consumption rates. With these conditions a methylbutenol concentration of 6.13 g/L was achieved with limited buildup of common byproducts: acetate, lactate, and ethanol though it is postulated that some of the acetate and ethanol were removed from the system via evaporation and entrainment (
Wild type K. oxytoca was cultured with 7% glucose in fed-batch culturing at shake-flask level to demonstrate organism robustness. BDO formation of 9% was demonstrated after 4 batches. BDO quantity was observed to continue to increase even after 4 cycles. Thus, it can be deduced that BDO culturing has no feedback inhibition at moderate concentrations. With this initial discovery, the team has taken the approach of metabolic engineering to maximize BDO yield and titer. The theoretical carbon yield is 0.5. A carbon yield of 70% of theoretical has been demonstrated thus far.
Fermentation with Lactate Elimination Strains
The experiment was performed in a 3 L fermenter. Aeration flow rate of 1 LPM/L of culture was used initially with a drop to 0.4 LPM/L of culture after initial growth conditions to trigger a micro-aerobic state and increase expression of BDO. The hydrolysate selection events were triggered through gradual use of high concentrations of wood hydrolysate whereas typical reports only recognize use of up to 5% hydrolysate due to growth inhibition by vanillin and aromatic compounds (see
Separation from Water
In most of the fermentation-based processes, since the product formed is in excess water, separation has been identified as an expensive unit operation. In contrast to ethanol, butanol, fatty acids, or lactic acid type of fermentations, the proposed innovation in one particular embodiment produces an unsaturated product methylbutenol (one double bond). This feature is exploitable to enable a very low cost extraction based separation process. Once the methylbutenol has been extracted from aqueous phase via organic solvents, it can be directly converted to isoprene, a very low boiling compound (35° C.), and can be collected as overhead from the dehydration reactor. Alternatively, the separation of methylbutenol and organic solvents is trivial distillation. A number of experiments were performed with different solvents to establish extraction based separation feasibility. Organic solvents, namely, benzene, toluene, and xylene were tested for extraction efficiency. The methylbutenol concentrations in water were chosen to be 10 g/L (established) and 50 g/L (future possibility). Single pass partitioning of up to 75% has been established by use of benzene at room temperature. Second pass extraction with fresh solvent essentially completes the extraction with nearly 100% partitioning of methylbutenol in benzene. Experimental details are shown in Table 1.
A number of experiments were performed with industrial Amberlyst® catalysts. The temperature was varied from 70° C. to 150° C., Liquid hourly space velocity (LHSV) was varied between 6 and 18 per hour. A total of 1 gm of catalyst was loaded in a tubular reactor heated by furnace (ATS) with proportional integral derivative (PID) controller. Expected operable catalytic temperature and pressure range is 70-220 C and 1-10 atm respectively.
Experiments have been conducted on conversion of BDO using different catalysts. The conversion reaction was carried out in a flow apparatus similar to that shown in
Although the invention has been described with regard to certain preferred embodiments, the scope of the invention is to be encompassed by the appended claims.
This application is the National Phase entry of PCT/US16/047576, filed Aug. 18, 2016, and claims the benefit under 35 U.S.C. 119(e) of the filing date of U.S. Provisional Patent Application Ser. No. 62/207,349, filed on Aug. 19, 2015, and titled “Hybrid Chem-Bio Process for Production of Isoprene”, the entire contents of which are incorporated by this reference as though set forth herein in their entirety.
Filing Document | Filing Date | Country | Kind |
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PCT/US16/47576 | 8/18/2016 | WO | 00 |
Number | Date | Country | |
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62207349 | Aug 2015 | US |