The present invention provides compounds of general formula (I) which impair the activity of CDK12. In particular, the present invention provides compositions and methods for the treatment of cancer and other CDK12-dependent diseases. More particularly, the present invention provides compounds which induce the proteolytic degradation of and/or Cyclin K in the cell. Thus, the present invention provides compounds capable of degrading CDK12 and/or Cyclin K for the treatment of breast cancer, liver cancer, lung cancer, ovarian cancer, endometrial cancer, cervical cancer, colorectal cancer, gastric cancer, esophageal cancer, bladder cancer, prostate cancer, Ewing sarcoma, glioblastoma and acute myeloid leukemia. Even more particularly, the present invention provides compounds capable of degrading CDK12 and/or Cyclin K for the treatment of lung cancer, breast cancer, liver cancer, colorectal cancer, gastric cancer, prostate cancer and leukemia.
Cyclin-dependent kinase (CDK) 12 (CDK12, gene id 51755) is a member of the subset of the CDK serine/threonine kinase family that phosphorylates the C-terminal domain (CTD) of RNA polymerase II. CDK12 in complex with Cyclin K (CCNK, gene id 8812) regulates transcriptional, co- and posttranscriptional processes by phosphorylation of Ser2 and Ser5 of the CTD of RNA polymerase II complexes which are important in the elongation phase of pre-mRNA synthesis. CDK12/Cyclin K has been reported to regulate transcriptional elongation and mRNA processing, in particular co- and post-transcriptional pre-mRNA splicing, alternative splicing, 3′ end processing, and suppression of intronic polyadenylation. CDK13 (CDK13, gene id 8621), a kinase which is closely related to CDK12, also forms a complex with Cyclin K and regulates the transcription of a different set of genes (Bartkowiak et al. Genes Dev. 2010; 24:2303-16. Dubbury et al. Nature. 2018; 564:141-5. Greenleaf, Transcription. 2018; 10:91-110. Greifenberg et al. Cell Rep. 2016; 14:320-31. Liang et al. Mol. Cell. Biol. 2015; 35:928-38. Lui et al. J. Clin. Pathol. 2018; 71:957-62. Tien et al. Nuc. Acids Res. 2017; 45:6698-716). The transcription of genes encoding components of DNA damage signaling and repair pathways, such as the homologous recombination and replication stress response genes BRCA1, FANCD2, FANCI, and ATR, as well as encoding components of other stress response pathways, such as NF-κB and oxidative stress response, has been reported to be specifically regulated by CDK12/Cyclin K as demonstrated by gene knock-down and chemoproteomics studies (Blazek et al. Genes Dev. 2011; 25:2158-72. Henry et al. Sci. Signal. 2018; 11:eaam8216. Li et al. Sci. Rep. 2016; 6:21455). In addition, CDK12/Cyclin K has been reported to control the translation of a subset of mRNAs, including the CHK1 mRNA, by directly phosphorylating the mRNA 5′ cap-binding translational repressor 4E-BP1 leading to its release from the mRNA cap (Choi et al. Genes Dev. 2019; 33:418-35). The recent discovery of rare bi-allelic CDK12 inactivating mutations in high-grade serous ovarian cancer and in primary and castration-resistant prostate cancer leading to a special type of genomic instability which is characterized by the occurrence of numerous tandem duplications, indicating gross defects in DNA repair, underscores the role of CDK12 in DNA damage response and the maintenance of the genome (Ekumi et al. Nucl. Acids Res. 2015; 43:2575-89. Grasso et al. Nature. 2012; 487:239-43. Joshi et al. J. Biol. Chem. 2014; 289:9247-53. Menghi et al. Cancer Cell. 2018; 34:197-210.e5. Popova et al. Cancer Res. 2016; 76:1882-91. Quigley et al. Cell. 2018; 174:758-69.e9. Robinson et al. 2015; 162:454. Viswanathan et al. Cell. 2018; 174:433-47.e19. Wu et al. Cell. 2018; 173:1770-82.e14). The CDK12 gene is located on chromosome 17 about 200 kb proximal to the ERBB2 gene and is often coamplified in breast cancer. Furthermore, CDK12 gene amplification has been observed in other cancer types such as stomach cancer, esophageal cancer, pancreatic cancer, uterine cancer, endometrial cancer, prostate cancer, and bladder cancer (Lui et al. J Clin Pathol. 2018; 71:957-62. Gupta et al. Clin. Cancer Res. 2017; 23:1346-57). CDK12 amplification and high expression levels suggest a tumor promoting role of CDK12 which is, at least partially, based on alternatively spliced mRNAs, increased DNA repair capabilities and increased stress tolerance (Lui et al. J Clin Pathol. 2018; 71:957-62. Tien et al. Nucl. Acids Res. 2017; 45:6698-716). Taken together these data validated CDK12 as a potential target to develop drugs for the treatment of cancer and other diseases such as myotonic dystrophy type 1.
Some inhibitors of CDK12 kinase activity are known:
Flavopiridol, a micromolar non-selective inhibitor of CDK12 which inhibits other kinases such as CDK9, CDK1, CDK4 etc. (Bösken et al. Nat. Comm. 2014; 5:3505). Dinaciclib, a pan CDK inhibitor (Johnson et al. Cell Rep. 2016; 17:2367-81). THZ531, a dual inhibitor of CDK12 and CDK13 (Zhang et al. Nat. Chem. Biol. 2016; 12:876-84). SR-3029 and related purine compounds (Johannes et al. Chem. Med. Chem. 2018; 13:231-5). SR-4835, a dual inhibitor of CDK12 and CDK13 (Quereda et al. Cancer Cell 2019; 36:1-14). Compound 919278, a micromolar CDK12 inhibitor (Henry et al. Science Signal. 2018; 11:eaam8216). Arylurea derivatives (Ito et al. J. Med. Chem. 2018; 61:7710-28).
There is a need for development of compounds selectively impairing the function of CDK12/Cyclin K for the treatment of cancer and other diseases, e.g. by inducing the proteolytic degradation of CDK12 and/or Cyclin K protein in the cell. Restricted selectivity of inhibitors targeting the ATP pocket is an issue which may lead to undesired side effects and limited clinical utility (Sawa. Mini-Rev. Med. Chem 2008; 8:1291-7). Surprisingly, the compounds described in the present invention induce the proteolytic degradation of CDK12 and/or Cyclin K protein in the cell. CDK12 inhibitors with low kinase inhibition potential at physiological ATP concentrations but strong CDK12 degrading potency are selective against other kinases. In addition, by degradation of CDK12 and/or Cyclin K functions of the CDK12/CyclinK protein complex which are independent from the sole kinase activity, such as scaffolding functions for other proteins e.g. in the RNA polymerase II complex or the pre-mRNA splicing complex will be impaired as well. Thus, there is a need to provide compounds which impair the activity of CDK12 and/or Cyclin K in the cell and which exhibit a good degree of selectivity towards the targeting of other CDKs and other kinases, such as, for example, casein kinases.
The present invention provides compounds of general formula (I):
in which X, R1, R2 and R3 are as described and defined herein, methods of preparing said compounds, intermediate compounds useful for preparing said compounds, pharmaceutical compositions and combinations comprising said compounds, and the use of said compounds for manufacturing pharmaceutical compositions for the treatment and/or prophylaxis of diseases, in particular of hyperproliferative disorders such as cancer disorders, as a sole agent or in combination with other active ingredients.
It has now been found that the compounds of the present invention effectively impair the activity of CDK12/Cyclin K for which data are given in the biological experimental section and may therefore be used for the treatment and/or prophylaxis of hyperproliferative disorders, such as cancer disorders. In particular, the compounds of the present invention are CDK12 inhibitors with low kinase inhibition potential at physiological ATP concentrations but strong proteolytic CDK12 and/or Cyclin K degrading potency in cells and are therefore selective against other kinases while maintaining an impairing effect towards CDK12/Cyclin K.
In accordance with a first aspect, the present invention provides compounds of general formula (I):
wherein
The term “substituted” means that one or more hydrogen atoms on the designated atom or group are replaced with a selection from the indicated group, provided that the designated atom's normal valency under the existing circumstances is not exceeded. Combinations of substituents and/or variables are permissible.
The term “optionally substituted” means that the number of substituents can be equal to or different from zero. Unless otherwise indicated, it is possible that optionally substituted groups are substituted with as many optional substituents as can be accommodated by replacing a hydrogen atom with a non-hydrogen substituent on any available carbon or nitrogen atom. Commonly, it is possible for the number of optional substituents, when present, to be 1, 2, 3, 4 or 5, in particular 1, 2 or 3, more particularly 1 or 2, and even more particularly 1.
As used herein, the term “one or more”, e.g. in the definition of the substituents of the compounds of general formula (I) of the present invention, means “1, 2, 3, 4 or 5, particularly 1, 2, 3 or 4, more particularly 1, 2 or 3, even more particularly 1 or 2”.
When groups in the compounds according to the invention are substituted, it is possible for said groups to be mono-substituted or poly-substituted with substituent(s), unless otherwise specified. Within the scope of the present invention, the meanings of all groups which occur repeatedly are independent from one another. It is possible that groups in the compounds according to the invention are substituted with one, two or three identical or different substituents, particularly with one, two or three substituents, more particularly with one substituent.
The terms “oxo”, “an oxo group” or “an oxo substituent” mean a doubly bonded oxygen atom ═O. Oxo may be attached to atoms of suitable valency, for example to a saturated carbon atom or to a sulfur atom. For example, but without limitation, one oxo group can be attached to a carbon atom, resulting in the formation of a carbonyl group C(═O), or two oxo groups can be attached to one sulfur atom, resulting in the formation of a sulfonyl group —S(═O)2.
The term “ring substituent” means a substituent attached to an aromatic or nonaromatic ring which replaces an available hydrogen atom on the ring.
Should a composite substituent be composed of more than one parts, e.g. (C1-C4-alkoxy)-(C1-C4-alkyl)-, it is possible for the position of a given part to be at any suitable position of said composite substituent, i.e. the C1-C4-alkoxy part can be attached to any carbon atom of the C1-C4-alkyl part of said (C1-C4-alkoxy)-(C1-C4-alkyl)-group. A hyphen at the beginning or at the end of such a composite substituent indicates the point of attachment of said composite substituent to the rest of the molecule. Should a ring, comprising carbon atoms and optionally one or more heteroatoms, such as nitrogen, oxygen or sulfur atoms for example, be substituted with a substituent, it is possible for said substituent to be bound at any suitable position of said ring, be it bound to a suitable carbon atom and/or to a suitable heteroatom.
The term “comprising” when used in the specification includes “consisting of”.
If within the present text any item is referred to as “as mentioned herein”, it means that it may be mentioned anywhere in the present text.
If within the present text any item is referred to as “supra” within the description it indicates any of the respective disclosures made within the specification in any of the preceding pages, or above on the same page.
If within the present text any item is referred to as “infra” within the description it indicates any of the respective disclosures made within the specification in any of the subsequent pages, or below on the same page.
The terms as mentioned in the present text have the following meanings:
The term “halogen atom” means a fluorine, chlorine, bromine or iodine atom, particularly a fluorine, chlorine or bromine atom, more particularly a fluorine atom.
The term “C1-C6-alkyl” means a linear or branched, saturated, monovalent hydrocarbon group having 1, 2, 3, 4, 5 or 6 carbon atoms, e.g. a methyl-, ethyl-, propyl-, isopropyl-, butyl-, sec-butyl-, isobutyl-, tert-butyl-, pentyl-, isopentyl-, 2-methylbutyl-, 1-methylbutyl-, 1-ethylpropyl-, 1,2-dimethylpropyl-, neo-pentyl-, 1,1-dimethylpropyl-, hexyl-, 1-methylpentyl-, 2-methylpentyl-, 3-methylpentyl-, 4-methylpentyl-, 1-ethylbutyl-, 2-ethylbutyl-, 1,1-dimethylbutyl-, 2,2-dimethylbutyl-, 3,3-dimethylbutyl-, 2,3-dimethylbutyl-, 1,2-dimethylbutyl- or a 1,3-dimethylbutyl-group, or an isomer thereof. Particularly, said group has 1, 2, 3 or 4 carbon atoms (“C1-C4-alkyl”), e.g. a methyl-, ethyl-, propyl-, isopropyl-, butyl-, sec-butyl-, isobutyl- or a tert-butyl group, more particularly 1, 2 or 3 carbon atoms (“C1-C3-alkyl”), e.g. a methyl-, ethyl-, n-propyl- or an isopropyl group.
The term “C1-C6-hydroxyalkyl” means a linear or branched, saturated, monovalent hydrocarbon group in which the term “C1-C6-alkyl” is defined supra, and in which one or more hydrogen atoms are replaced with a hydroxy group, e.g. a hydroxymethyl-, 1-hydroxyethyl-, 2-hydroxyethyl-, 1,2-dihydroxyethyl-, 3-hydroxypropyl-, 2-hydroxypropyl-, 1-hydroxypropyl-, 1-hydroxypropan-2-yl-, 2-hydroxypropan-2-yl-, 2,3-dihydroxypropyl-, 1,3-dihydroxypropan-2-yl-, 3-hydroxy-2-methyl-propyl-, 2-hydroxy-2-methyl-propyl- or a 1-hydroxy-2-methyl-propyl-group.
The term “C1-C6-alkylsulfanyl” means a linear or branched, saturated, monovalent group of formula (C1-C6-alkyl)-S—, in which the term “C1-C6-alkyl” is as defined supra, e.g. a methylsulfanyl-, ethylsulfanyl-, propylsulfanyl-, isopropylsulfanyl-, butylsulfanyl-, sec-butylsulfanyl-, isobutylsulfanyl-, tert-butylsulfanyl-, pentylsulfanyl-, isopentylsulfanyl- or a hexylsulfanyl-group.
The term “C1-C6-haloalkyl” means a linear or branched, saturated, monovalent hydrocarbon group in which the term “C1-C6-alkyl” is as defined supra and in which one or more of the hydrogen atoms are replaced, identically or differently, with a halogen atom. Preferably, said halogen atom is a fluorine atom. Said C1-C6-haloalkyl, particularly a C1-C3-haloalkyl group is, for example, fluoromethyl-, difluoromethyl-, trifluoromethyl-, 2-fluoroethyl-, 2,2-difluoroethyl-, 2,2,2-trifluoroethyl-, pentafluoroethyl-, 3,3,3-trifluoropropyl- or a 1,3-difluoropropan-2-yl group.
The term “C1-C6-alkoxy” means a linear or branched, saturated, monovalent group of formula (C1-C6-alkyl)-O—, in which the term “C1-C6-alkyl” group is as defined supra, e.g. methoxy-, ethoxy-, n-propoxy-, isopropoxy-, n-butoxy-, sec-butoxy-, isobutoxy-, tert-butoxy-, pentyloxy-, isopentyloxy- or a n-hexyloxy group, or an isomer thereof.
The term “C1-C6-haloalkoxy” means a linear or branched, saturated, monovalent C1-C6-alkoxy group, as defined supra, in which one or more of the hydrogen atoms is replaced, identically or differently, with a halogen atom. Preferably, said halogen atom in “C1-C6-haloalkoxy-” is fluorine, resulting in a group referred herein as “C1-C6-fluoroalkoxy-”. Representative C1-C6-fluoroalkoxy-groups include, for example, —OCF3, —OCHF2, —OCH2F, —OCF2CF3 and —OCH2CF3.
The term “C2-C6-alkenyl-” means a linear or branched, monovalent hydrocarbon group, which contains one or more double bonds and which has 2, 3, 4, 5 or 6 carbon atoms, preferably 2, 3 or 4 carbon atoms (“C2-C4-alkenyl-”) or 2 or 3 carbon atoms (“C2-C3-alkenyl-”), it being understood that in the case in which said alkenyl-group contains more than one double bond, then said double bonds may be isolated from, or conjugated with, each other. Representative alkenyl groups include, for example, an ethenyl-, prop-2-enyl-, (E)-prop-1-enyl-, (Z)-prop-1-enyl-, iso-propenyl-, but-3-enyl-, (E)-but-2-enyl-, (Z)-but-2-enyl-, (E)-but-1-enyl-, (Z)-but-1-enyl-, 2-methylprop-2-enyl-, 1-methylprop-2-enyl-, 2-methylprop-1-enyl-, (E)-1-methylprop-1-enyl-, (Z)-1-methylprop-1-enyl-, buta-1,3-dienyl-, pent-4-enyl-, (E)-pent-3-enyl-, (Z)-pent-3-enyl-, (E)-pent-2-enyl-, (Z)-pent-2-enyl-, (E)-pent-1-enyl-, (Z)-pent-1-enyl-, 3-methylbut-3-enyl-, 2-methylbut-3-enyl-, 1-methylbut-3-enyl-, 3-methylbut-2-enyl-, (E)-2-methylbut-2-enyl-, (Z)-2-methylbut-2-enyl-, (E)-1-methylbut-2-enyl-, (Z)-1-methylbut-2-enyl-, (E)-3-methylbut-1-enyl-, (Z)-3-methylbut-1-enyl-, (E)-2-methylbut-1-enyl-, (Z)-2-methylbut-1-enyl-, (E)-1-methylbut-1-enyl-, (Z)-1-methylbut-1-enyl-, 1,1-dimethylprop-2-enyl-, 1-ethylprop-1-enyl-, 1-propylvinyl-, 1-isopropylvinyl-, (E)-3,3-dimethylprop-1-enyl-, (Z)-3,3-dimethylprop-1-enyl-, penta-1,4-dienyl-, hex-5-enyl-, (E)-hex-4-enyl-, (Z)-hex-4-enyl-, (E)-hex-3-enyl-, (Z)-hex-3-enyl-, (E)-hex-2-enyl-, (Z)-hex-2-enyl-, (E)-hex-1-enyl-, (Z)-hex-1-enyl-, 4-methylpent-4-enyl-, 3-methylpent-4-enyl-, 2-methylpent-4-enyl-, 1-methylpent-4-enyl-, 4-methylpent-3-enyl-, (E)-3-methylpent-3-enyl-, (Z)-3-methylpent-3-enyl-, (E)-2-methylpent-3-enyl-, (Z)-2-methylpent-3-enyl-, (E)-1-methylpent-3-enyl-, (Z)-1-methylpent-3-enyl-, (E)-4-methylpent-2-enyl-, (Z)-4-methylpent-2-enyl-, (E)-3-methylpent-2-enyl-, (Z)-3-methylpent-2-enyl-, (E)-2-methylpent-2-enyl-, (Z)-2-methylpent-2-enyl-, (E)-1-methylpent-2-enyl-, (Z)-1-methylpent-2-enyl-, (E)-4-methylpent-1-enyl-, (Z)-4-methylpent-1-enyl-, (E)-3-methylpent-1-enyl-, (Z)-3-methylpent-1-enyl-, (E)-2-methylpent-1-enyl-, (Z)-2-methylpent-1-enyl-, (E)-1-methylpent-1-enyl-, (Z)-1-methylpent-1-enyl-, 3-ethylbut-3-enyl-, 2-ethylbut-3-enyl-, 1-ethylbut-3-enyl-, (E)-3-ethylbut-2-enyl-, (Z)-3-ethylbut-2-enyl-, (E)-2-ethylbut-2-enyl-, (Z)-2-ethylbut-2-enyl-, (E)-1-ethylbut-2-enyl-, (Z)-1-ethylbut-2-enyl-, (E)-3-ethylbut-1-enyl-, (Z)-3-ethylbut-1-enyl-, 2-ethylbut-1-enyl-, (E)-1-ethylbut-1-enyl-, (Z)-1-ethylbut-1-enyl-, 2-propylprop-2-enyl-, 1-propylprop-2-enyl-, 2-isopropylprop-2-enyl-, 1-isopropylprop-2-enyl-, (E)-2-propylprop-1-enyl-, (Z)-2-propylprop-1-enyl-, (E)-1-propylprop-1-enyl-, (Z)-1-propylprop-1-enyl-, (E)-2-isopropylprop-1-enyl-, (Z)-2-isopropylprop-1-enyl-, (E)-1-isopropylprop-1-enyl-, (Z)-1-isopropylprop-1-enyl-, hexa-1,5-dienyl- and a 1-(1,1-dimethylethyl-)ethenyl group.
Particularly, said group is an ethenyl- or a prop-2-enyl group.
The same definitions can be applied should the alkenyl group be placed within a chain as a bivalent “C2-C6-alkenylene” moiety. All names as mentioned above then will bear a “ene” added to their end, thus e.g., a “pentenyl” becomes a bivalent “pentenylene” group.
The term “C2-C6-haloalkenyl-” means a linear or branched hydrocarbon group in which one or more of the hydrogen atoms of a “C2-C6-alkenyl-” as defined supra are each replaced, identically or differently, by a halogen atom. Preferably, said halogen atom is fluorine, resulting in a group referred herein as “C2-C6-fluoroalkenyl-”. Representative C2-C6-fluoroalkenyl-groups include, for example, —CH═CF2, —CF═CH2, —CF═CF2, —C(CH3)═CF2, —CH═C(F)—CH3, —CH2—CF═CF2 and —CF2—CH═CH2.
The term “C2-C6-alkynyl-” means a linear or branched, monovalent hydrocarbon group which contains one or more triple bonds, and which contains 2, 3, 4, 5 or 6 carbon atoms, preferably 2, 3 or 4 carbon atoms (“C2-C4-alkynyl-”) or 2 or 3 carbon atoms (“C2-C3-alkynyl-”). Representative C2-C6-alkynyl-groups include, for example, an ethynyl-, prop-1-ynyl-, prop-2-ynyl-, but-1-ynyl-, but-2-ynyl-, but-3-ynyl-, pent-1-ynyl-, pent-2-ynyl, pent-3-ynyl-, pent-4-ynyl-, hex-1-ynyl-, hex-2-ynyl-, hex-3-ynyl-, hex-4-ynyl-, hex-5-ynyl-, 1-methylprop-2-ynyl-, 2-methylbut-3-ynyl-, 1-methylbut-3-ynyl-, 1-methylbut-2-ynyl-, 3-methylbut-1-ynyl-, 1-ethylprop-2-ynyl-, 3-methylpent-4-ynyl-, 2-methylpent-4-ynyl-, 1-methylpent-4-ynyl-, 2-methylpent-3-ynyl-, 1-methylpent-3-ynyl-, 4-methylpent-2-ynyl-, 1-methylpent-2-ynyl-, 4-methylpent-1-ynyl-, 3-methylpent-1-ynyl-, 2-ethylbut-3-ynyl-, 1-ethylbut-3-ynyl-, 1-ethylbut-2-ynyl-, 1-propylprop-2-ynyl-, 1-isopropylprop-2-ynyl-, 2,2-dimethylbut-3-ynyl-, 1,1-dimethylbut-3-ynyl-, 1,1-dimethylbut-2-ynyl- and a 3,3-dimethylbut-1-ynyl-group. Particularly, said alkynyl-group is an ethynyl-, a prop-1-ynyl- or a prop-2-ynyl group.
The term “C3-C8-cycloalkyl” means a saturated, monovalent, mono- or bicyclic hydrocarbon ring which contains 3, 4, 5, 6, 7 or 8 carbon atoms (“C3-C8-cycloalkyl”). Said C3-C8-cycloalkyl group is for example, a monocyclic hydrocarbon ring, e.g. a cyclopropyl-, cyclobutyl-, cyclopentyl-, cyclohexyl-, cycloheptyl- or cyclooctyl-group, or a bicyclic hydrocarbon ring, e.g. a bicyclo[4.2.0]octyl- or a octahydropentalenyl-group.
The term “C3-C6-halocycloalkyl” means a saturated, monovalent, mono- or bicyclic hydrocarbon ring which contains 3, 4, 5 or 6 carbon atoms in which the term “C3-C6-cycloalkyl” is as defined supra and in which one or more of the hydrogen atoms of the hydrocarbon ring are replaced, identically or differently, with a halogen atom.
Preferably, said halogen atom is a fluorine atom. The “C3-C6-cycloalkyl” group as defined supra in which one or more of the hydrogen atoms are replaced, identically or differently, with a halogen atom, preferably a fluorine atom, is for example, a monocyclic hydrocarbon ring, e.g. a cyclopropyl-, cyclobutyl-, cyclopentyl- or cyclohexyl-group, or a bicyclic hydrocarbon ring.
The term “C4-C8-cycloalkenyl” means a monovalent, mono- or bicyclic hydrocarbon ring which contains 4, 5, 6, 7 or 8 carbon atoms and one double bond. Particularly, said ring contains 4, 5 or 6 carbon atoms (“C4-C6-cycloalkenyl”). Said C4-C8-cycloalkenyl group is for example, a monocyclic hydrocarbon ring, e.g., a cyclobutenyl-, cyclopentenyl-, cyclohexenyl-, cycloheptenyl- or a cyclooctenyl group, or a bicyclic hydrocarbon ring, e.g., a bicyclo[2.2.1]hept-2-enyl- or a bicyclo[2.2.2]oct-2-enyl group.
The term “C3-C8-cycloalkoxy” means a saturated, monovalent, mono- or bicyclic group of formula (C3-C8-cycloalkyl)-O—, which contains 3, 4, 5, 6, 7 or 8 carbon atoms, in which the term “C3-C8-cycloalkyl” is defined supra, e.g. a cyclopropyloxy-, cyclobutyloxy-, cyclopentyloxy-, cyclohexyloxy-, cycloheptyloxy- or a cyclooctyloxy-group.
If the term “heterocycloalkyl” is used without specifying a number of atoms it is meant to be a “4- to 10-membered heterocycloalkyl-” group, more particularly a 5- to 6-membered heterocycloalkyl group. The terms “4- to 7-membered heterocycloalkyl”, “4- to 6-membered heterocycloalkyl” and “5- to 7-membered heterocycloalkyl” mean a monocyclic, saturated heterocycle with “4, 5, 6 or 7” or, respectively, “4, 5 or 6” or “5, 6 or 7” ring atoms in total, which are saturated or partially unsaturated monocycles, bicycles or polycycles that contain one or two identical or different ring heteroatoms selected from nitrogen, oxygen and sulfur or one group selected from —S(═O)—, —S(═O)2— and —S(═O)(═NH)—. It is possible for said heterocycloalkyl group to be attached to the rest of the molecule via any one of the carbon atoms or, if present, a nitrogen atom.
Exemplarily, without being limited thereto, said “4- to 7-membered heterocycloalkyl”, can be a 4-membered ring, a “4-membered heterocycloalkyl-” group, such as an azetidinyl- or an oxetanyl group; or a 5-membered ring, a “5-membered heterocycloalkyl-” group, such as a tetrahydrofuranyl-, dioxolinyl-, pyrrolidinyl-, imidazolidinyl-, pyrazolidinyl- or a pyrrolinyl group; or a 6-membered ring, a “6-membered heterocycloalkyl-” group, such as a tetrahydropyranyl-, piperidinyl-, morpholinyl-, 3-oxomorpholin-4-yl, dithianyl-, thiomorpholinyl- or a piperazinyl group; or a 7-membered ring, a “7-membered heterocycloalkyl-” group, such as an azepanyl-, diazepanyl- or an oxazepanyl group, for example. The heterocycloalkyl groups may be substituted one or more times independently with C1-C3-alkyl, C1-C3-alkoxy, hydroxy, halogen or a carbonyl group.
Particularly, “4- to 6-membered heterocycloalkyl” means a 4- to 6-membered heterocycloalkyl as defined supra containing one ring nitrogen atom and optionally one further ring heteroatom selected from nitrogen, oxygen and sulfur. Particularly, “5- to 7-membered heterocycloalkyl” means a 5- to 7-membered heterocycloalkyl as defined supra containing one ring nitrogen atom and optionally one further ring heteroatom selected from nitrogen, oxygen and sulfur. More particularly, “5- or 6-membered heterocycloalkyl” means a monocyclic, saturated heterocycle with 5 or 6 ring atoms in total, containing one ring nitrogen atom and optionally one further ring heteroatom selected from nitrogen and oxygen.
The term “heteroaryl-” means a monocyclic, bicyclic or tricyclic aromatic ring system having 5, 6, 7, 8, 9, 10, 11, 12, 13 or 14 ring atoms (a “5- to 14-membered heteroaryl-” group), preferably 5, 6, 9 or 10 ring atoms and which contains 1, 2, 3 or 4 heteroatoms which may be identical or different, said heteroatoms being selected from oxygen, nitrogen and sulfur. Said heteroaryl-group can be a 5-membered heteroaryl group, such as, for example, a thienyl-, furanyl-, pyrrolyl-, oxazolyl-, thiazolyl-, imidazolyl-, pyrazolyl-, isoxazolyl-, isothiazolyl-, oxadiazolyl-, triazolyl-, thiadiazolyl- or a tetrazolyl group; or a 6-membered heteroaryl group, such as, for example, a pyridyl-, pyridazinyl-, pyrimidyl-, pyrazinyl- or a triazinyl group; or a benzo-fused 5-membered heteroaryl-group, such as, for example, a benzofuranyl-, benzothienyl-, benzoxazolyl-, benzisoxazolyl-, benzimidazolyl-, benzothiazolyl-, benzotriazolyl-, indazolyl-, indolyl- or a isoindolyl group; or a benzo-fused 6-membered heteroaryl group, such as, for example, a quinolinyl-, quinazolinyl-, isoquinolinyl-, cinnolinyl-, phthalazinyl- or quinoxalinyl-; or another bicyclic group, such as, for example, indolizinyl-, purinyl- or a pteridinyl group.
Preferably, “heteroaryl-” is a monocyclic aromatic ring system having 5 or 6 ring atoms and which contains at least one heteroatom, if more than one, they may be identical or different, said heteroatom being selected from oxygen, nitrogen and sulfur, a (“5- to 6-membered monocyclic heteroaryl-”) group, such as, for example, a thienyl-, furanyl-, pyrrolyl-, oxazolyl-, thiazolyl-, imidazolyl-, pyrazolyl-, isoxazolyl-, isothiazolyl-, oxadiazolyl-, triazolyl-, thiadiazolyl-, tetrazolyl-, pyridyl-, pyridazinyl-, pyrimidyl-, pyrazinyl- or a triazinyl group.
In general, and unless otherwise mentioned, said heteroaryl-groups include all the possible isomeric forms thereof, e.g., the positional isomers thereof. Thus, for some illustrative non-restricting example, the term pyridyl-includes pyridin-2-yl-, pyridin-3-yl- and pyridin-4-yl-; the term thienyl- includes thien-2-yl- and thien-3-yl-, and a heteroarylene group may be inserted into a chain also in the inverse way such as e.g. a 2,3-pyridiylene includes pyridine-2,3-yl as well as pyridine-3,2-yl. Furthermore, said heteroaryl-groups can be attached to the rest of the molecule via any one of the carbon atoms, or, if applicable, a nitrogen atom, e.g., a pyrrol-1-yl-, a pyrazol-1-yl- or an imidazol-1-yl-group.
Particularly, the heteroaryl group is a pyridyl- or pyrimidyl group or a imidazolyl group, including a hydroxy substitution of the pyridyl group leading, e.g., to a 2-hydroxy-pyridine which is the tautomeric form to a 2-oxo-2(1H)-pyridine. In some embodiments, the heteroaryl group is an oxazolyl group.
Further, as used herein, the term “C3-C8”, as used throughout this text, e.g., in the context of the definition of “C3-C8-cycloalkyl-”, is to be understood as meaning e.g. a cycloalkyl-group having a whole number of carbon atoms of 3 to 8, i.e., 3, 4, 5, 6, 7 or 8 carbon atoms. It is to be understood further that said term “C3-C8” is to be interpreted as disclosing any sub-range comprised therein, e.g., C3-C6, C4-C5, C3-C5, C3-C4, C4-C6, C5-C7 preferably C3-C6.
Similarly, as used herein, the term “C2-C6”, as used throughout this text, e.g., in the context of the definitions of “C2-C6-alkenyl-” and “C2-C6-alkynyl-”, is to be understood as meaning an alkenyl-group or an alkynyl-group having a whole number of carbon atoms from 2 to 6, i.e., 2, 3, 4, 5 or 6 carbon atoms. It is to be understood further that said term “C2-C6” is to be interpreted as disclosing any sub-range comprised therein, e.g., C2-C6, C3-C5, C3-C4, C2-C3, C2-C4, C2-C5 preferably C2-C3.
The term “C1-C6”, as used throughout this text, e.g., in the context of the definition of “C1-C6-alkyl-”, “C1-C6-haloalkyl-”, “C1-C6-alkoxy-” or “C1-C6-haloalkoxy-” is to be understood as meaning an alkyl group having a whole number of carbon atoms from 1 to 6, i.e., 1, 2, 3, 4, 5 or 6 carbon atoms. It is to be understood further that said term “C1-C6” is to be interpreted as disclosing any sub-range comprised therein, e.g. C1-C6, C2-C6, C3-C4, C1-C2, C1-C3, C1-C4, C1-C5, C1-C6 preferably C1-C2, C1-C3, C1-C4, C1-C5, C1-C6 more preferably C1-C4, in the case of “C1-C6-haloalkyl-” or “C1-C6-haloalkoxy-” even more preferably C1-C2.
When a range of values is given, said range encompasses each value and sub-range within said range.
For Example:
“C1-C6” encompasses C1, C2, C3, C4, C5, C6, C1-C6, C1-C5, C1-C4, C1-C3, C1-C2, C2-C6, C2-C5, C2-C4, C2-C3, C3-C6, C3-C5, C3-C4, C4-C6, C4-C5, and C5-C6;
“C2-C6” encompasses C2, C3, C4, C5, C6, C2-C6, C2-C5, C2-C4, C2-C3, C3- C6, C3-C5, C3-C4, C4-C6, C4-C5, and C5-C6;
“C3-C10” encompasses C3, C4, C5, C6, C7, C8, C9, C10, C3-C10, C3-C9, C3-C8, C3-C7, C3-C6, C3-C5, C3-C4, C4-C10, C4-C9, C4-C8, C4-C7, C4-C6, C4-C5, C5-C10, C5-C9, C5-C8, C5-C7, C5-C6, C6-C10, C6-C9, C6-C8, C6-C7, C7-C10, C7-C9, C7-C8, C8-C10, C8-C9 and C9-C10;
“C3-C8” encompasses C3, C4, C5, C6, C7, C8, C3-C8, C3-C7, C3-C6, C3-C5, C3-C4, C4-C8, C4-C7, C4-C6, C4-C5, C5-C8, C5-C7, C5-C6, C6-C8, C6-C7 and C7-C8;
“C3-C6” encompasses C3, C4, C5, C6, C3-C6, C3-C5, C3-C4, C4-C6, C4-C5, and C5-C6;
“C4-C8” encompasses C4, C5, C6, C7, C8, C4-C8, C4-C7, C4-C6, C4-C5, C5- C8, C5-C7, C5-C6, C6-C8, C6-C7 and C7-C8;
“C4-C7” encompasses C4, C5, C6, C7, C4-C7, C4-C6, C4-C5, C5-C7, C5-C6 and C6-C7;
“C4-C6” encompasses C4, C5, C6, C4-C6, C4-C5 and C5-C6;
“C5-C1” encompasses C5, C6, C7, C8, C9, C1, C5-C10, C5-C9, C5-C8, C5-C7, C5-C6, C6-C10, C6-C9, C6-C8, C6-C7, C7-C10, C7-C9, C7-C8, C8-C10, C8-C9 and C9-C10;
“C6-C10” encompasses C6, C7, C8, C9, C10, C6-C10, C6-C9, C6-C8, C6-C7, C7-C10, C7-C9, C7-C8, C8-C10, C8-C9 and C9-C10.
As used herein, the term “leaving group” refers to an atom or a group of atoms that is displaced in a chemical reaction as stable species taking with it the bonding electrons, e.g., typically forming an anion. Preferably, a leaving group is selected from the group comprising: halo, in particular a chloro, bromo or iodo, (methylsulfonyl)oxy-, [(4-methylphenyl)sulfonyl]oxy-, [(trifluoromethyl)sulfonyl]oxy-, [(nonafluorobutyl)sulfonyl]oxy-[(4-bromophenyl)sulfonyl]oxy-, [(4-nitrophenyl)sulfonyl]oxy-, [(2-nitro-phenyl)sulfonyl]oxy-, [(4-isopropylphenyl)sulfonyl]oxy-, [(2,4,6-triisopropylphenyl)sulfonyl]oxy-, [(2,4,6-trimethylphenyl)sulfonyl]oxy-, [(4-tert-butylphenyl)sulfonyl]oxy-, (phenylsulfonyl)oxy-, and a [(4-methoxyphenyl)sulfonyl]oxy group.
As used herein, the term “protective group” is a protective group attached to an oxygen or nitrogen atom in intermediates used for the preparation of compounds of the general formula (I). Such groups are introduced e.g., by chemical modification of the respective hydroxy or amino group in order to obtain chemoselectivity in a subsequent chemical reaction. Protective groups for hydroxy and amino groups are described for example in T. W. Greene and P. G. M. Wuts in Protective Groups in Organic Synthesis, 4th edition, Wiley 2006; more specifically, protective groups for amino groups can be selected from substituted sulfonyl groups, such as a mesyl-, tosyl- or a phenylsulfonyl group, acyl groups such as a benzoyl-, acetyl- or a tetrahydropyranol group, or carbamate based groups, such as a tert-butoxycarbonyl group (Boc). Protective groups for hydroxy groups can be selected from acyl groups such as a benzoyl-, acetyl-, pivaloyl- or a tetrahydropyranol group, or can include silicon, as in e.g., a tert-butyldimethylsilyl-, tert-butyldiphenylsilyl-, triethylsilyl- or a triisopropylsilyl group.
The term “substituent” refers to a group “substituted” on, e.g., an alkyl-, haloalkyl-, cycloalkyl-, heterocyclyl-, heterocycloalkenyl-, cycloalkenyl-, aryl-, or a heteroaryl group at any atom of that group, replacing one or more hydrogen atoms therein. In one aspect, the substituent(s) on a group are independently any one single, or any combination of two or more of the permissible atoms or groups of atoms delineated for that substituent. In another aspect, a substituent may itself be substituted with any one of the above substituents. Further, as used herein, the phrase “optionally substituted” means unsubstituted (e.g., substituted with an H) or substituted.
It will be understood that the description of compounds herein is limited by principles of chemical bonding known to those skilled in the art. Accordingly, where a group may be substituted by one or more of a number of substituents, such substitutions are selected so as to comply with principles of chemical bonding with regard to valencies, etc., and to give compounds which are not inherently unstable. For example, any carbon atom will be bonded to two, three, or four other atoms, consistent with the four valence electrons of carbon.
By “subject” is meant a mammal, including, but not limited to, a human or non-human mammal, such as a bovine, equine, canine, ovine, rodent, or feline.
It is possible for the compounds of general formula (I) to exist as isotopic variants. The invention therefore includes one or more isotopic variant(s) of the compounds of general formula (I), particularly deuterium-containing compounds of general formula (I).
The invention also includes all suitable isotopic variations of a compound of the invention.
The term “isotopic variant” of a compound or a reagent is defined as a compound exhibiting an unnatural proportion of one or more of the isotopes that constitute such a compound.
The expression “unnatural proportion” in relation to an isotope means a proportion of such isotope which is higher than its natural abundance. The natural abundances of isotopes to be applied in this context are described in “Isotopic Compositions of the Elements 1997”, Pure Appl. Chem., 70(1), 217-235, 1998.
An isotopic variation of a compound of the invention is defined as one in which at least one atom is replaced by an atom having the same atomic number but an atomic mass different from the atomic mass usually or predominantly found in nature. Examples of isotopes that can be incorporated into a compound of the invention include isotopes of hydrogen, carbon, nitrogen, oxygen, phosphorus, sulphur, fluorine, chlorine, bromine and iodine, such as 2H (deuterium), 3H (tritium), 11C, 13C, 14C, 15N, 17O, 18O, 32P, 33P, 33S, 34S, 35S, 36S, 18F, 36Cl, 82Br, 123I, 124I, 129I and 131I, respectively. Accordingly, recitation of “hydrogen” or “H” should be understood to encompass 1H (protium), 2H (deuterium), and 3H (tritium) unless otherwise specified. Certain isotopic variations of a compound of the invention, for example, those in which one or more radioactive isotopes such as 3H or 14C are incorporated, are useful in drug and/or substrate tissue distribution studies. Tritiated and carbon-14, i.e., 14C, isotopes are particularly preferred for their ease of preparation and detectability. Further, substitution with isotopes such as deuterium may afford certain therapeutic advantages resulting from greater metabolic stability, for example, increased in vivo half-life or reduced dosage requirements and hence may be preferred in some circumstances. Isotopic variations of a compound of the invention can generally be prepared by conventional procedures known by a person skilled in the art such as by the illustrative methods or by the preparations described in the examples hereafter using appropriate isotopic variations of suitable reagents.
With respect to the treatment and/or prophylaxis of the disorders specified herein, the isotopic variant(s) of the compounds of general formula (I) preferably contain deuterium (“deuterium-containing compounds of general formula (I)”). Isotopic variants of the compounds of general formula (I) in which one or more radioactive isotopes, such as 3H or 14C, are incorporated are useful, e.g., in drug and/or substrate tissue distribution studies. These isotopes are particularly preferred for the ease of their incorporation and detectability. Positron-emitting isotopes such as 18F or 11C may be incorporated into a compound of general formula (I). These isotopic variants of the compounds of general formula (I) are useful for in vivo imaging applications. Deuterium-containing and 13C-containing compounds of general formula (I) can be used in mass spectrometry analyses in the context of preclinical or clinical studies.
Isotopic variants of the compounds of general formula (I) can generally be prepared by methods known to a person skilled in the art, such as those described in the schemes and/or examples herein, by substituting a reagent for an isotopic variant of said reagent, preferably for a deuterium-containing reagent. Depending on the desired sites of deuteration, in some cases deuterium from D2O can be incorporated either directly into the compounds or into reagents that are useful for synthesizing such compounds. Deuterium gas is also a useful reagent for incorporating deuterium into molecules. Catalytic deuteration of olefinic bonds and acetylenic bonds is a rapid route for incorporation of deuterium. Metal catalysts (i.e. Pd, Pt, and Rh) in the presence of deuterium gas can be used to directly exchange deuterium for hydrogen in functional groups containing hydrocarbons. A variety of deuterated reagents and synthetic building blocks are commercially available from companies such as for example C/D/N Isotopes, Quebec, Canada; Cambridge Isotope Laboratories Inc., Andover, Mass., USA; and CombiPhos Catalysts, Inc., Princeton, N.J., USA.
The term “deuterium-containing compound of general formula (I)” is defined as a compound of general formula (I), in which one or more hydrogen atom(s) is/are replaced by one or more deuterium atom(s) and in which the abundance of deuterium at each deuterated position of the compound of general formula (I) is higher than the natural abundance of deuterium, which is about 0.015%. Particularly, in a deuterium-containing compound of general formula (I) the abundance of deuterium at each deuterated position of the compound of general formula (I) is higher than 10%, 20%, 30%, 40%, 50%, 60%, 70% or 80%, preferably higher than 90%, 95%, 96% or 97%, even more preferably higher than 98% or 99% at said position(s). It is understood that the abundance of deuterium at each deuterated position is independent of the abundance of deuterium at other deuterated position(s).
The selective incorporation of one or more deuterium atom(s) into a compound of general formula (I) may alter the physicochemical properties (such as for example acidity [C. L. Perrin, et al., J. Am. Chem. Soc., 2007, 129, 4490], basicity [C. L. Perrin et al., J. Am. Chem. Soc., 2005, 127, 9641], lipophilicity [B. Testa et al., Int. J. Pharm., 1984, 19(3), 271]) and/or the metabolic profile of the molecule and may result in changes in the ratio of parent compound to metabolites or in the amounts of metabolites formed. Such changes may result in certain therapeutic advantages and hence may be preferred in some circumstances. Reduced rates of metabolism and metabolic switching, where the ratio of metabolites is changed, have been reported (A. E. Mutlib et al., Toxicol. Appl. Pharmacol., 2000, 169, 102). These changes in the exposure to parent drug and metabolites can have important consequences with respect to the pharmacodynamics, tolerability and efficacy of a deuterium-containing compound of general formula (I). In some cases deuterium substitution reduces or eliminates the formation of an undesired or toxic metabolite and enhances the formation of a desired metabolite (e.g., Nevirapine: A. M. Sharma et al., Chem. Res. Toxicol., 2013, 26, 410; Efavirenz: A. E. Mutlib et al., Toxicol. Appl. Pharmacol., 2000, 169, 102). In other cases the major effect of deuteration is to reduce the rate of systemic clearance. As a result, the biological half-life of the compound is increased. The potential clinical benefits would include the ability to maintain similar systemic exposure with decreased peak levels and increased trough levels. This could result in lower side effects and enhanced efficacy, depending on the particular compound's pharmacokinetic/pharmacodynamic relationship. ML-337 (C. J. Wenthur et al., J. Med. Chem., 2013, 56, 5208) and Odanacatib (K. Kassahun et al., WO2012/112363) are examples for this deuterium effect. Still other cases have been reported in which reduced rates of metabolism result in an increase in exposure of the drug without changing the rate of systemic clearance (e.g., Rofecoxib: F. Schneider et al., Arzneim. Forsch./Drug. Res., 2006, 56, 295; Telaprevir: F. Maltais et al., J. Med. Chem., 2009, 52, 7993). Deuterated drugs showing this effect may have reduced dosing requirements (e.g., lower number of doses or lower dosage to achieve the desired effect) and/or may produce lower metabolite loads.
A compound of general formula (I) may have multiple potential sites of attack for metabolism. To optimize the above-described effects on physicochemical properties and metabolic profile, deuterium-containing compounds of general formula (I) having a certain pattern of one or more deuterium-hydrogen exchange(s) can be selected. Particularly, the deuterium atom(s) of deuterium-containing compound(s) of general formula (I) is/are attached to a carbon atom and/or is/are located at those positions of the compound of general formula (I), which are sites of attack for metabolizing enzymes such as e.g. cytochrome P450.
Where the plural form of the word compounds, salts, polymorphs, hydrates, solvates and the like, is used herein, this is taken to mean also a single compound, salt, polymorph, isomer, hydrate, solvate or the like.
By “stable compound” or “stable structure” is meant a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture, and formulation into an efficacious therapeutic agent.
The compounds of the present invention optionally contain one or more asymmetric centres, depending upon the location and nature of the various substituents desired. It is possible that one or more asymmetric carbon atoms are present in the (R) or (S) configuration, which can result in racemic mixtures in the case of a single asymmetric centre, and in diastereomeric mixtures in the case of multiple asymmetric centres. In certain instances, it is possible that asymmetry also be present due to restricted rotation about a given bond, for example, the central bond adjoining two substituted aromatic rings of the specified compounds.
Preferred compounds are those which produce the more desirable biological activity. Separated, pure or partially purified isomers and stereoisomers or racemic or diastereomeric mixtures of the compounds of the present invention are also included within the scope of the present invention. The purification and the separation of such materials can be accomplished by standard techniques known in the art.
Preferred isomers are those which produce the more desirable biological activity. These separated, pure or partially purified isomers or racemic mixtures of the compounds of this invention are also included within the scope of the present invention. The purification and the separation of such materials can be accomplished by standard techniques known in the art.
The optical isomers can be obtained by resolution of the racemic mixtures according to conventional processes, for example, by the formation of diastereoisomeric salts using an optically active acid or base or formation of covalent diastereomers. Examples of appropriate acids are tartaric, diacetyltartaric, ditoluoyltartaric and camphorsulfonic acid. Mixtures of diastereoisomers can be separated into their individual diastereomers on the basis of their physical and/or chemical differences by methods known in the art, for example, by chromatography or fractional crystallisation. The optically active bases or acids are then liberated from the separated diastereomeric salts. A different process for separation of optical isomers involves the use of chiral chromatography (e.g., HPLC columns using a chiral phase), with or without conventional derivatisation, optimally chosen to maximise the separation of the enantiomers. Suitable HPLC columns using a chiral phase are commercially available, such as those manufactured by Daicel, e.g., Chiracel OD and Chiracel OJ, for example, among many others, which are all routinely selectable. Enzymatic separations, with or without derivatisation, are also useful. The optically active compounds of the present invention can likewise be obtained by chiral syntheses utilizing optically active starting materials.
In order to distinguish different types of isomers from each other reference is made to IUPAC Rules Section E (Pure Appl Chem 45, 11-30, 1976).
The present invention includes all possible stereoisomers of the compounds of the present invention as single stereoisomers, or as any mixture of said stereoisomers, e.g. (R)- or (S)-isomers, in any ratio. Isolation of a single stereoisomer, e.g. a single enantiomer or a single diastereomer, of a compound of the present invention is achieved by any suitable state of the art method, such as chromatography, especially chiral chromatography, for example.
Further, it may be possible for the compounds of the present invention to exist as tautomers. For example, any compound of the present invention which contains an imidazopyridine moiety as a heteroaryl group for example can exist as a 1H tautomer, or a 3H tautomer, or even a mixture in any amount of the two tautomers, namely:
The present invention includes all possible tautomers of the compounds of the present invention as single tautomers, or as any mixture of said tautomers, in any ratio.
Further, in the context of the present invention, it may be possible for the compounds of formula (I) to exist as tautomers. For example, as depicted below, the compounds of formula (I) according to the present invention can exist as a 1H tautomer, or a 3H tautomer, or even a mixture in any amount of two or more of the possible tautomers:
The present invention includes all possible tautomers of the compounds of formula (I) of the present invention as single tautomers, or as any mixture of any two or more of any possible tautomers, in any ratio.
Further, in the context of the present invention, it may be possible for the compounds of formula (I) where X is a nitrogen atom to exist as tautomers. For example, as depicted below, the compounds of formula (I) according to the present invention where X is a nitrogen atom can exist as a 1H tautomer, or a 4H tautomer, or even a mixture in any amount of two or more of the possible tautomers:
The present invention includes all possible tautomers of the compounds of formula (I) of the present invention where X is a nitrogen atom as single tautomers, or as any mixture of any two or more possible tautomers, in any ratio.
Further, in the context of the present invention, it may be possible for the compounds of formula (I) where X is a CR4 group to exist as tautomers. For example, as depicted below, the compounds of formula (I) according to the present invention where X is a CR4 group can exist as two different 1H tautomers, or even a mixture in any amount of two or more of the possible tautomers:
The present invention includes all possible tautomers of the compounds of formula (I) of the present invention where X is a CR4 group as single tautomers, or as any mixture of any two or more possible tautomers, in any ratio.
Further, in the context of the present invention, it may be possible for the triazine core of the compounds of formula (I) to exhibit tautomerism and for said compounds to exist as single tautomers or even as a mixture in any amount of two or more of the possible tautomers:
Further, the compounds of the present invention can exist as N-oxides, which are defined in that at least one nitrogen of the compounds of the present invention is oxidised. The present invention includes all such possible N-oxides.
The present invention also provides useful forms of the compounds of the present invention, such as metabolites, hydrates, solvates, prodrugs, salts, in particular pharmaceutically acceptable salts, and/or co-precipitates.
The compounds of the present invention can exist as a hydrate, or as a solvate, wherein the compounds of the present invention contain polar solvents, in particular water, methanol or ethanol for example, as structural element of the crystal lattice of the compounds. It is possible for the amount of polar solvents, in particular water, to exist in a stoichiometric or non-stoichiometric ratio. In the case of stoichiometric solvates, e.g. a hydrate, hemi-, (semi-), mono-, sesqui-, di-, tri-, tetra-, penta- etc. solvates or hydrates, respectively, are possible. The present invention includes all such hydrates or solvates.
Further, it is possible for the compounds of the present invention to exist in free form, e.g. as a free base, or as a free acid, or as a zwitterion, or to exist in the form of a salt. Said salt may be any salt, either an organic or inorganic addition salt, particularly any pharmaceutically acceptable organic or inorganic addition salt, which is customarily used in pharmacy, or which is used, for example, for isolating or purifying the compounds of the present invention.
The term “pharmaceutically acceptable salt” refers to an inorganic or organic acid addition salt of a compound of the present invention. For example, see S. M. Berge, et al. “Pharmaceutical Salts,” J. Pharm. Sci. 1977, 66, 1-19.
Physiologically acceptable salts of the compounds according to the invention encompass acid addition salts of mineral acids, carboxylic acids and sulfonic acids, for example salts of hydrochloric acid, hydrobromic acid, hydroiodic acid, sulfuric acid, bisulfuric acid, phosphoric acid, nitric acid or with an organic acid, such as formic, acetic, acetoacetic, pyruvic, trifluoroacetic, propionic, butyric, hexanoic, heptanoic, undecanoic, lauric, benzoic, salicylic, 2-(4-hydroxybenzoyl)-benzoic, camphoric, cinnamic, cyclopentanepropionic, digluconic, 3-hydroxy-2-naphthoic, nicotinic, pamoic, pectinic, persulfuric, 3-phenylpropionic, picric, pivalic, 2-hydroxyethanesulfonate, itaconic, sulfamic, trifluoromethanesulfonic, dodecylsulfuric, ethanesulfonic, benzenesulfonic, para-toluenesulfonic, methansulfonic, 2-naphthalenesulfonic, naphthalenedisulfonic, camphorsulfonic acid, citric, tartaric, stearic, lactic, oxalic, malonic, succinic, malic, adipic, alginic, maleic, fumaric, D-gluconic, mandelic, ascorbic, glucoheptanoic, glycerophosphoric, aspartic, sulfosalicylic, hemisulfuric, or thiocyanic acid, for example.
A “pharmaceutically acceptable anion” refers to the deprotonated form of a conventional acid, such as, for example, a hydroxide, a carboxylate, a sulfate, a halide, a phosphate, or a nitrate.
Physiologically acceptable salts of the compounds according to the invention also comprise salts of conventional bases, such as, by way of example and by preference, alkali metal salts (for example lithium, sodium and potassium salts), alkaline earth metal salts (for example calcium, strontium and magnesium salts) and ammonium salts derived from ammonia or organic amines with 1 to 16 C atoms, such as, by way of example and by preference, ethylamine, diethylamine, triethylamine, ethyldiisopropylamine, monoethanolamine, diethanolamine, triethanolamine, dicyclohexylamine, dimethylaminoethanol, procaine, dibenzylamine, N-methylmorpholine, arginine, lysine, ethylenediamine, N-methylpiperidine, N-methylglucamine, dimethylglucamine, ethylglucamine, 1,6-hexadiamine, glucosamine, sarcosine, serinol, tris(hydroxymethyl)aminomethane, aminopropanediol, Sovak base, and 1-amino-2,3,4-butanetriol.
Additionally, the compounds according to the invention may form salts with a quaternary ammonium ion obtainable, e.g., by quaternisation of a basic nitrogen-containing group with agents such as lower alkylhalides such as methyl-, ethyl-, propyl-, and butylchlorides, -bromides and -iodides; dialkylsulfates such as dimethyl-, diethyl-, dibutyl- and diamylsulfates, long chain halides such as decyl-, lauryl-, myristyl- and stearylchlorides, -bromides and -iodides, aralkylhalides such as benzyl- and phenethylbromides and others. Examples of suitable quaternary ammonium ions are tetramethylammonium, tetraethylammonium, tetra(n-propyl)ammonium, tetra (n-butyl)ammonium, or N-benzyl-N,N,N-trimethylammonium.
The present invention includes all possible salts of the compounds of the present invention as single salts, or as any mixture of said salts, in any ratio.
In the present text, in particular in the Experimental Section, for the synthesis of intermediates and of examples of the present invention, when a compound is mentioned as a salt form with the corresponding base or acid, the exact stoichiometric composition of said salt form, as obtained by the respective preparation and/or purification process, is, in most cases, unknown.
Unless specified otherwise, suffixes to chemical names or structural formulae relating to salts, such as “hydrochloride”, “trifluoroacetate”, “sodium salt”, or “x HCl”, “x CF3COOH”, “x Na+”, for example, mean a salt form, the stoichiometry of which salt form not being specified.
This applies analogously to cases in which synthesis intermediates or example compounds or salts thereof have been obtained, by the preparation and/or purification processes described, as solvates, such as hydrates, with (if defined) unknown stoichiometric composition.
Unless specified otherwise, suffixes to chemical names or structural formulae relating to salts, such as “hydrochloride”, “trifluoroacetate”, “sodium salt”, or “x HCl”, “x CF3COOH”, “x Na+”, for example, mean a salt form, the stoichiometry of which salt form not being specified.
Solvates and hydrates of disclosed intermediates or example compounds, or salts thereof, which have been obtained, by the preparation and/or purification processes described herein, may be formed in any ratio.
Furthermore, the present invention includes all possible crystalline forms, or polymorphs, of the compounds of the present invention, either as a single polymorph, or as a mixture of more than one polymorph, in any ratio.
Moreover, the present invention also includes prodrugs of the compounds according to the invention. The term “prodrugs” designates compounds which themselves can be biologically active or inactive, but are converted (for example metabolically or hydrolytically) into compounds according to the invention during their residence time in the body. For example, a prodrug may be in the form of an in vivo hydrolysable ester of the specified compound. Derivatives of the compounds of formula (I) and the salts thereof which are converted into a compound of formula (I) or a salt thereof in a biological system (bioprecursors or pro-drugs) are covered by the invention. Said biological system may be, for example, a mammalian organism, particularly a human subject. The bioprecursor is, for example, converted into the compound of formula (I) or a salt thereof by metabolic processes.
Further, in the context of the present invention, when the inhibitory and/or degradatory activity of the compounds of formula (I) according to the present invention is referred to, the following terms are defined as follows:
As used herein and in the context of the present invention, the term “IC50 CDK12 hATP” refers to the IC50 values obtained according to the assay described in section 2.2 of the Experimental Section herein below, i.e. the IC50 values for the inhibition of CDK12 at high ATP.
As used herein and in the context of the present invention, the term “DC50 CDK12” refers to the DC50 values obtained according to the assay described in section 6 of the Experimental Section herein below, i.e. the DC50 values for the degradation of CDK12.
As used herein and in the context of the present invention, the term “DC50 Cyclin K” refers to the DC50 values obtained according to the assay described in section 7 of the Experimental Section herein below, i.e. the DC50 values for the degradation of Cyclin K.
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
In accordance with further embodiments, the present invention provides compounds of general formula (I), supra, wherein:
The present invention provides the compounds of general formula (I) which are disclosed in the Example Section of this text, infra.
In some embodiments, the present invention includes compounds of general formula (I) selected from:
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 5.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 5.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 10.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 10.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 20.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 30.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 30.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 50.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 50.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 5 and a (DC50 CDK12) value which is lower than 200 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 5 and a (DC50 CDK12) value which is lower than 20 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 5 and a (DC50 CDK12) value which is lower than 2 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 10 and a (DC50 CDK12) value which is lower than 200 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 10 and a (DC50 CDK12) value which is lower than 20 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 10 and a (DC50 CDK12) value which is lower than 2 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20 and a (DC50 CDK12) value which is equal or lower than 200 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 20 and a (DC50 CDK12) value which is lower than 200 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 20 and a (DC50 CDK12) value which is lower than 20 nM.
In some embodiments, the present invention includes compounds of general formula (I), supra, which show a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is greater than 20 and a (DC50 CDK12) value which is lower than 2 nM.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C6-alkyl group, a C1-C6-haloalkyl group, a C3-C8-cycloalkyl group, a (C3-C8-cycloalkyl)-(C1-C6-alkyl)-group, a cyano group, a phenyl group, a heterocycloalkyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C4-alkyl group, a C1-C3-haloalkyl group, a C3-C5-cycloalkyl group, a cyano group, a phenyl group, a heterocycloalkyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C4-alkyl group, a C1-C3-haloalkyl group, a C3-C5-cycloalkyl group, a cyano group, a phenyl group, a heterocycloalkyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C6-alkyl group, a C1-C6-haloalkyl group, a C3-C8-cycloalkyl group, a cyano group, a phenyl group, a heterocycloalkyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C4-alkyl group, a C1-C4-haloalkyl group, a C3-C4-cycloalkyl group, a cyano group, a phenyl group, a heterocycloalkyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C4-alkyl group, a C1-C3-haloalkyl group, a C3-C5-cycloalkyl group, a cyano group, a phenyl group, a heterocycloalkyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C6-haloalkyl group, a cyano group and a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C3-alkyl group, a C1-C3-haloalkyl group, a C3-C6-cycloalkyl group and a C3-C6-halocycloalkyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C6-alkyl group, a C1-C6-haloalkyl group, a C3-C8-cycloalkyl group, a C3-C8-halocycloalkyl group and a (C3-C8-cycloalkyl)-(C1-C6-alkyl)-group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a C1-C3-alkyl group, a C1-C3-haloalkyl group, a C3-C6-cycloalkyl group and a C3-C6-halocycloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C3-alkyl group, a C1-C3-haloalkyl group, a C3-C6-cycloalkyl group and a C3-C6-halocycloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C3-alkyl group, a C1-C3-haloalkyl group and a C3-C6-cycloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C3-alkyl group and a C3-C6-cycloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C3-alkyl group and a C1-C3-haloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C3-alkyl group and a trifluoromethyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group, a C1-C3-alkyl group and a C3-C6-halocycloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom, a cyano group and a C3-C6-halocycloalkyl group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a halogen atom and a cyano group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a C1-C6-alkyl group, a C1-C6-haloalkyl group, a C3-C8-cycloalkyl group, a C3-C8-halocycloalkyl group and a (C3-C8-cycloalkyl)-(C1-C6-alkyl)-group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R1 is selected from a C1-C6-alkyl group, a C1-C6-haloalkyl group, a C3-C8-cycloalkyl group, a (C3-C8-cycloalkyl)-(C1-C6-alkyl)-group.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is selected from a C1-C6-alkyl group, a C1-C6-alkoxy group, a C1-C6-haloalkyl group, a C1-C6-haloalkoxy group, a C3-C8-cycloalkyl group, a C3-C8-cycloalkoxy group, a heterocycloalkyl group and a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is selected from a C1-C6-alkyl group, a C1-C6-alkoxy group, a C1-C6-haloalkyl group, a C1-C6-haloalkoxy group, a C3-C8-cycloalkyl group, a C3-C8-cycloalkoxy group, a 4- to 7-membered heterocycloalkyl group and a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is selected from a C1-C6-alkyl group, a C1-C6-alkoxy group, a C1-C6-haloalkyl group, a C1-C6-haloalkoxy group, a C3-C8-cycloalkyl group, a C3-C8-cycloalkoxy group, a heterocycloalkyl group and a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is selected from a C1-C6-alkyl group, a C1-C6-alkoxy group, a C1-C6-haloalkyl group, a C1-C6-haloalkoxy group, a C3-C8-cycloalkyl group, a C3-C8-cycloalkoxy group, a heterocycloalkyl group and a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R2 is a —NRaRb group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is selected from a nitrogen atom and a CR4 group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a nitrogen atom or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R3 is selected from a phenyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R3 is selected from a phenyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R3 is selected from a C3-C8-cycloalkyl group, a heterocycloalkyl group, a phenyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R3 is selected from a phenyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R3 is selected from a phenyl group and a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R4 is selected from a hydrogen atom, a C1-C3-alkyl group and a C1-C3-haloalkyl group;
or, where X is a CR4 group, R3 and R4, together with the carbon atoms to which they are attached form a 5- to 7-membered cycloalkenyl, heterocycloalkenyl, phenyl or heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R4 is selected from a hydrogen atom, a methyl group and a trifluoromethyl group;
or, where X is a CR4 group, R3 and R4, together with the carbon atoms to which they are attached form a 5- to 7-membered cycloalkenyl, heterocycloalkenyl, phenyl or heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R4 is selected from a hydrogen atom, a C1-C3-alkyl group and a C1-C3-haloalkyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R4 is selected from a hydrogen atom, a methyl group and a trifluoromethyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a 5- to 7-membered cycloalkenyl, heterocycloalkenyl, phenyl or heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a 6-membered cycloalkenyl, phenyl or heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a 6-membered cycloalkenyl or 6-membered heterocycloalkenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a 6-membered cycloalkenyl or 6-membered heterocycloalkenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a 6-membered cycloalkenyl or 6-membered heterocycloalkenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a 6-membered cycloalkenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl or a heteroaryl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which X is a CR4 group and R3 and R4, together with the carbon atoms to which they are attached form a phenyl group,
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom, a C1-C6-alkyl group, a C3-C8-cycloalkyl group, a C1-C6-haloalkyl group, a (C3-C8-cycloalkyl)-(C1-C6-alkyl)-group, a C1-C6-hydroxyalkyl group, a (C1-C6-alkoxy)-(C1-C6-alkyl)-group, a formyl (HCO—) group, an acetyl (H3CCO—) group, a heterocycloalkyl group, a heteroaryl group and a phenyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom, a C1-C6-alkyl group, a C3-C8-cycloalkyl group, a C1-C6-haloalkyl group, a (C3-C8-cycloalkyl)-(C1-C6-alkyl)-group, a C1-C6-hydroxyalkyl group, a (C1-C6-alkoxy)-(C1-C6-alkyl)-group, a heteroaryl group and a phenyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom, a C1-C3-alkyl group, a C3-C8-cycloalkyl group, a C1-C3-haloalkyl group, a (C3-C8-cycloalkyl)-(C1-C3-alkyl)-group, a C1-C3-hydroxyalkyl group, a (C1-C3-alkoxy)-(C1-C3-alkyl)-group, a heteroaryl group and a phenyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom, a C1-C3-alkyl group, a C3-C8-cycloalkyl group, a C1-C3-haloalkyl group, a (C3-C8-cycloalkyl)-(C1-C3-alkyl)-group, a C1-C3-hydroxyalkyl group, a (C1-C3-alkoxy)-(C1-C3-alkyl)-group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom, a C1-C3-alkyl group, a C3-C6-cycloalkyl group, a C2-C3-haloalkyl group, a (C3-C6-cycloalkyl)-(C1-C3-alkyl)-group, a C2-C3-hydroxyalkyl group, a (C1-C3-alkoxy)-(C1-C3-alkyl)-group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom, a heteroaryl group and a phenyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each independently selected from a hydrogen atom and a C1-C3-alkyl group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each a C1-C3-alkyl group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R5 and R6 are each a hydrogen atom or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R7 is selected from a hydrogen atom and a C1-C3-alkyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R7 is a hydrogen atom or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R7 is a C1-C3-alkyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is selected from a hydrogen atom, a C1-C6-alkyl group, a C3-C6-cycloalkyl group and a C1-C6-haloalkyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is selected from a hydrogen atom, a C1-C3-alkyl group, a C3-C6-cycloalkyl group and a C1-C3-haloalkyl group or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is selected from a hydrogen atom, a C1-C6-alkyl group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is a hydrogen atom, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is a C1-C6-alkyl group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is a C1-C3-alkyl group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In some embodiments, the present invention provides compounds of formula (I), supra, in which R8 is a methyl group, or a tautomer, or an N-oxide, or a salt thereof, or a salt of a tautomer, or a salt of an N-oxide, or a mixture of same.
In further embodiments, the present invention includes compounds of formula (I), or a tautomer, an N-oxide, or a salt thereof, or a salt of a tautomer or an N-oxide, or a mixture of same.
In further embodiments, the present invention includes compounds of formula (I), or a salt thereof.
In further embodiments, the present invention includes compounds of formula (I), or a tautomer, or a salt thereof, or a salt of a tautomer, or a mixture of same.
In further embodiments, the present invention includes compounds of formula (I), which are a salt.
In further embodiments, the present invention includes compounds of formula (I), which are a tautomer or a salt thereof, or a salt of a tautomer, or a mixture of same.
In further embodiments, the present invention includes compounds of formula (I), which are an N-oxide, or a salt thereof, or a salt of an N-oxide, or a mixture of same.
In further embodiments of the first aspect, the present invention provides combinations of two or more of the above mentioned embodiments under the heading “further embodiments of the first aspect of the present invention”.
Furthermore it is understood that the invention includes any subcombination of the disclosed single embodiments herein for certain residues or subcombination of residues of formula (I).
The present invention includes any sub-combination within any embodiments or aspects of the present invention of compounds of general formula (I), supra.
The present invention includes any sub-combination within any embodiments or aspects of the present invention of compounds of general formula (I) or intermediate compounds.
The present invention includes the compounds of general formula (I) which are disclosed in the Example Section of this text, infra.
The following paragraphs outline a variety of synthetic approaches suitable to prepare compounds of the general formula (I), and intermediates useful for their synthesis.
In addition to the routes described below, also other routes may be used to synthesise the target compounds, in accordance with common general knowledge of a person skilled in the art of organic synthesis. The order of transformations exemplified in the following schemes is therefore not intended to be limiting, and suitable synthesis steps from various schemes can be combined to form additional synthesis sequences. In addition, interconversion of any of the substituents, in particular R1, R2, R3 or R4 can be achieved before and/or after the exemplified transformations. These modifications can be such as the introduction of protective groups, cleavage of protective groups, reduction or oxidation of functional groups, halogenation, metallation, metal catalysed coupling reactions, exemplified by but not limited to Suzuki, Sonogashira and Ullmann coupling, ester saponifications, amide coupling reactions, and/or substitution or other reactions known to a person skilled in the art. These transformations include those which introduce a functionality allowing for further interconversion of substituents. Appropriate protective groups and their introduction and cleavage are well-known to a person skilled in the art (see for example T. W. Greene and P. G. M. Wuts in Protective Groups in Organic Synthesis, 3rd edition, Wiley 1999).
Compounds of general formula (Ia), in which R1, R3 and X are as defined for the compounds of general formula (I) and R2 is —NRaRb, C1-C6-alkoxy group or a C3-C8-cycloalkoxy, can be assembled from sulfone derivatives of formula (II), in which R1, R3 and X are as defined for the compounds of general formula (I), and an amine or an alcohol of formula R2—H (IIIa), in which R2 is defined as —NRaRb, C1-C6-alkoxy or a C3-C8-cycloalkoxy, by means of an aromatic nucleophilic substitution well known to the person skilled in the art, according to Scheme 1. Said nucleophilic reaction can be performed by reaction of compounds of the formulae (II) and (IIIa) in the presence of a suitable base, such as sodium hydroxide, sodium hydride, sodium carbonate, potassium carbonate or cesium carbonate, N,N-diisopropylethylamine, triethylamine or 1,8-diazabicyclo(5.4.0)undec-7-ene (DBU), and in the case of aromatic amines in the presence of an acid such as 4-methylbenzenesulfonic acid in an appropriate solvent.
Preferred herein is the performance of said nucleophilic reaction in the case of amines using N,N-diisopropylethylamine as a base in acetonitrile as a solvent, within a temperature range from 20° C. to 80° C.
Also preferred herein is the performance of said nucleophilic reaction in the case of aromatic amines using 4-methylbenzenesulfonic acid in N-methyl-2-pyrrolidone (NMP) as a solvent, within a temperature range from 100° C. to 170° C.
Compounds of the general formula (I) in which R1 is a cyano group, a phenyl group, or a heteroaryl group can be assembled from a corresponding compound of the general formula (I) in which R1 is chloro, bromo or iodo and free NH-groups may be protected for example with a para-methoxybenzyl group using palladium catalyst reactions.
For a cyano group for example the corresponding bromide reacts with zinc cyanide in the presence of 1,1′-bis(diphenylphosphanyl)ferrocene and N,N-diisopropylethylamine in an appropriate solvent such as N,N-dimethylacetamide within a temperature range from 60° C. to 90° C.
For a phenyl group or a heteroaryl group the corresponding bromide reacts via a Suzuki reaction using a corresponding boronic acid derivative in the presence of a Pd-catalyst and a base in an appropriate solvent.
Intermediate sulfone derivatives of formula (II) are available for example by the sequence depicted in scheme 2. This approach started with 2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (see Dudfield, Philip J.; Le, Van-Due; Lindell, Stephen D.; Rees, Charles W. Journal of the Chemical Society. Perkin transactions I, 1999, #20, p. 2929-2936) of the formula (III). It is possible to introduce halogens such as bromo, chloro or iodo using the corresponding N-halo-succinimide reagent to obtain compounds of the formula (IV) with R1 being bromo, chloro or iodo. Reaction of said derivatives (IV) with compounds of the formula (V) resulted in sulfones of the formula (II).
The synthesis of different types of amines of the general formula (V) is depicted in scheme 3. In the case of amines with X═N and R3 is as defined for the compounds of general formula (I) in the first step commercially available protected ethyl 2-aminoethanimidate (VI) reacts with acylhydrazides of the general formula (VII) in which R3 is as defined for the compounds of general formula (I) according to US2010/22599 under basic conditions such as sodium bicarbonate or potassium carbonate to yield the protected amines (VIII) which in the subsequent step are deprotected using conditions known by the person skilled in the art to give amines of formula (V) with X═N. The used acylhydrazides (VII) are commercially available or can be easily prepared using the corresponding acid or ester via known procedures for person skilled in the art.
For amines (V) with X═CR4 and R4 as defined for the compounds of general formula (I) commercially available protected aminoacetaldehydes (IX) react with 1,2-diketones (X) (for preparation see Landais, Y.; Vincent, J. M., Science of Synthesis, (2005) 26, 647) in the presence of ammonium acetate in methanol/tetrahydrofurane according to Bioorganic and Medicinal Chemistry, 2012, 7128 to yield the protected amines (XI) which in the subsequent step are deprotected using conditions known by the person skilled in the art to give amines of formula (V) with X═CR4.
These amines can be also prepared starting with 1,2-diamino compounds (XII) by the reaction with commercially available protected glycine derivatives of formula (XIII) using 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride and hydroxybenzotriazole mono hydrate followed by acetic acid according to Bioorganic and Medicinal Chemistry Letters, 2013, 4374 to yield the protected amines (XI) which in the subsequent step are deprotected using conditions known by the person skilled in the art to give amines of formula (V) with X═CR4.
Alternatively, the 1,2-diamino compounds (XII) can react with glycine (XIV) using acid condition such as aqueous HCl according to EP1135374 (2006) to give amines of formula (IX) with X═CR4.
Alternatively, compounds of the formula (IV) with R1 defined as iodine can react with a trifluoromethylating reagent as methyl difluoro(fluorosulfonyl)acetate in the presence of copper(I)iodide in an appropriate solvent to give compounds of the formula (IV) with R1 defined as a trifluoromethyl group. Afterwards these compounds can react in several steps as described to compounds of the formula (I).
The present invention includes the intermediate compounds which are disclosed in the Example Section of this text, infra.
The compounds of general formula (I) of the present invention can be converted to any salt, preferably pharmaceutically acceptable salts, by any method which is known to the person skilled in the art. Similarly, any salt of a compound of general formula (I) of the present invention can be converted into the free compound, by any method which is known to the person skilled in the art.
Compounds of general formula (I) of the present invention demonstrate a valuable pharmacological spectrum of action which could not have been predicted. The compounds of the present invention effectively inhibit the activity of CDK12 for which data are given in the biological experimental section and may therefore be used for the treatment and/or prophylaxis of hyperproliferative disorders, such as cancer disorders in humans and animals.
Methods and Administration
Compounds of general formula (I) of the present invention demonstrate a valuable pharmacological spectrum of action and pharmacokinetic profile, both of which could not have been predicted. Compounds of the present invention have surprisingly been found to effectively impair the activity of CDK12, showing a strong CDK12 degrading potency which induce the proteolytic degradation of CDK12 protein in the cell resulting in an increased selectivity against other kinases. Therefore, it is possible that said compounds can be used for the treatment and/or prophylaxis of diseases, preferably hyperproliferative disorders in humans and animals.
Further, CDK12 has been identified as a druggable target for addressing the RNA-based disease myotonic dystrophy type 1 (DM1) (Ketley et al., Sci. Transl. Med. 12, eaaz2415 (2020)). Thus, it is possible that compounds of general formula (I) of the present invention can be used for the treatment and/or prophylaxis of diseases in which CDK12 is involved, such as myotonic dystrophy type 1 (DM1).
As used herein, “prophylaxis” includes a use of the compound that, in a statistical sample, reduces the occurrence of the disorder or condition in the treated sample relative to an untreated control sample, or delays the onset or reduces the severity of one or more symptoms of the disorder or condition relative to the untreated control sample, when administered to prior to the onset of the disorder or condition.
Compounds of the present invention can be utilized to inhibit, block, reduce, decrease, etc., cell proliferation and/or cell division, and/or produce apoptosis, which are all types of “treatment”. This method comprises administering to a mammal in need thereof, including a human, an amount of a compound of general formula (I) of the present invention, or a pharmaceutically acceptable salt, isomer, polymorph, metabolite, hydrate, solvate or ester thereof, which is effective to treat the disorder.
Hyperproliferative disorders include, but are not limited to, for example: psoriasis, keloids, and other hyperplasias affecting the skin, benign prostate hyperplasia (BPH), solid tumours, such as cancers of the breast, respiratory tract, brain, reproductive organs, digestive tract, urinary tract, eye, liver, skin, head and neck, thyroid, parathyroid and their distant metastases. Those disorders also include lymphomas, sarcomas, and leukaemias.
Examples of breast cancers include, but are not limited to, invasive ductal carcinoma, invasive lobular carcinoma, ductal carcinoma in situ, and lobular carcinoma in situ.
Examples of cancers of the respiratory tract include, but are not limited to, small-cell and non-small-cell lung carcinoma, as well as bronchial adenoma and pleuropulmonary blastoma.
Examples of brain cancers include, but are not limited to, brain stem and hypothalamic glioma, cerebellar and cerebral astrocytoma, medulloblastoma, ependymoma, as well as neuroectodermal and pineal tumour.
Tumours of the male reproductive organs include, but are not limited to, prostate and testicular cancer.
Tumours of the female reproductive organs include, but are not limited to, endometrial, cervical, ovarian, vaginal, and vulvar cancer, as well as sarcoma of the uterus.
Tumours of the digestive tract include, but are not limited to, anal, colon, colorectal, oesophageal, gallbladder, gastric, pancreatic, rectal, small-intestine, and salivary gland cancers.
Tumours of the urinary tract include, but are not limited to, bladder, penile, kidney, renal pelvis, ureter, urethral and human papillary renal cancers.
Eye cancers include, but are not limited to, intraocular melanoma and retinoblastoma.
Examples of liver cancers include, but are not limited to, hepatocellular carcinoma (liver cell carcinomas with or without fibrolamellar variant), cholangiocarcinoma (intrahepatic bile duct carcinoma), and mixed hepatocellular cholangiocarcinoma.
Skin cancers include, but are not limited to, basal cell carcinoma, squamous cell carcinoma, Kaposi's sarcoma, malignant melanoma, Merkel cell skin cancer and non-melanoma skin cancer.
Head-and-neck cancers include, but are not limited to, laryngeal, hypopharyngeal, nasopharyngeal, oropharyngeal cancer, lip and oral cavity cancer and squamous cell.
Lymphomas include, but are not limited to, AIDS-related lymphoma, chronic lymphocytic lymphoma (CLL), non-Hodgkin's lymphoma (NHL), T-non-Hodgkin lymphoma (T-NHL), subtypes of NHL such as Diffuse Large Cell Lymphoma (DLBCL), activated B-cell DLBCL, germinal center B-cell lymphoma DLBCL, double-hit lymphoma and double-expressor lymphoma; anaplastic large cell lymphoma, B-cell lymphoma, cutaneous T-cell lymphoma, Burkitt's lymphoma, follicular lymphoma, hairy cell lymphoma, Hodgkin's disease, mantle cell lymphoma (MCL), lymphoma of the central nervous system, small lymphocytic lymphoma and chronic lymphocytic lymphoma and Sezary syndrome.
Sarcomas include, but are not limited to, sarcoma of the soft tissue, osteosarcoma, malignant fibrous histiocytoma, lymphosarcoma, and rhabdomyosarcoma.
Leukemias include, but are not limited to acute lymphoblastic leukemia, acute myeloid leukemia, (acute) T-cell leukemia, acute lymphoblastic leukemia, acute lymphocytic leukemia (ALL), acute monocytic leukemia (AML), acute promyelocytic leukemia (APL), bisphenotypic B myelomonocytic leukemia, chronic lymphocytic leukemia (CLL), chronic myelogenous leukemia, chronic myeloid leukemia (CML), chronic myelomonocytic leukemia (CMML), large granular lymphocytic leukemia, plasma cell leukemia and also myelodysplastic syndrome (MDS), which can develop into an acute myeloid leukemia.
The present invention also provides methods of treating angiogenic disorders including diseases associated with excessive and/or abnormal angiogenesis.
Inappropriate and ectopic expression of angiogenesis can be deleterious to an organism. A number of pathological conditions are associated with the growth of extraneous blood vessels. These include, for example, diabetic retinopathy, ischemic retinal-vein occlusion, and retinopathy of prematurity [Aiello et al., New Engl. J. Med., 1994, 331, 1480; Peer et al., Lab. Invest., 1995, 72, 638], age-related macular degeneration (AMD) [Lopez et al., Invest. Ophthalmol. Vis. Sci., 1996, 37, 855], neovascular glaucoma, psoriasis, retrolental fibroplasias, angiofibroma, inflammation, rheumatoid arthritis (RA), restenosis, in-stent restenosis, vascular graft restenosis, etc. In addition, the increased blood supply associated with cancerous and neoplastic tissue, encourages growth, leading to rapid tumour enlargement and metastasis. Moreover, the growth of new blood and lymph vessels in a tumour provides an escape route for renegade cells, encouraging metastasis and the consequence spread of the cancer. Thus, compounds of general formula (I) of the present invention can be utilized to treat and/or prevent any of the aforementioned angiogenesis disorders, for example by inhibiting and/or reducing blood vessel formation; by inhibiting, blocking, reducing, decreasing, etc. endothelial cell proliferation, or other types involved in angiogenesis, as well as causing cell death or apoptosis of such cell types.
These disorders have been well characterized in humans, but also exist with a similar etiology in other mammals, and can be treated by administering pharmaceutical compositions of the present invention.
The term “treating” or “treatment” as stated throughout this document is used conventionally, for example the management or care of a subject for the purpose of combating, alleviating, reducing, relieving and/or improving the condition of a disease or disorder, such as a carcinoma.
The compounds of the present invention can be used in particular in therapy and prevention, i.e. prophylaxis, of tumour growth and metastases, especially in solid tumours of all indications and stages with or without pre-treatment of the tumour growth.
Generally, the use of chemotherapeutic agents and/or anti-cancer agents in combination with a compound or pharmaceutical composition of the present invention will serve to:
In addition, the compounds of general formula (I) of the present invention can also be used in combination with radiotherapy and/or surgical intervention.
In a further embodiment of the present invention, the compounds of general formula (I) of the present invention may be used to sensitize a cell to radiation, i.e. treatment of a cell with a compound of the present invention prior to radiation treatment of the cell renders the cell more susceptible to DNA damage and cell death than the cell would be in the absence of any treatment with a compound of the present invention. In one aspect, the cell is treated with at least one compound of general formula (I) of the present invention.
Thus, the present invention also provides a method of killing a cell, wherein a cell is administered one or more compounds of the present invention in combination with conventional radiation therapy.
The present invention also provides a method of rendering a cell more susceptible to cell death, wherein the cell is treated with one or more compounds of general formula (I) of the present invention prior to the treatment of the cell to cause or induce cell death. In one aspect, after the cell is treated with one or more compounds of general formula (I) of the present invention, the cell is treated with at least one compound, or at least one method, or a combination thereof, in order to cause DNA damage for the purpose of inhibiting the function of the cell or killing the cell.
In other embodiments of the present invention, a cell is killed by treating the cell with at least one DNA damaging agent, i.e. after treating a cell with one or more compounds of general formula (I) of the present invention to sensitize the cell to cell death, the cell is treated with at least one DNA damaging agent to kill the cell. DNA damaging agents useful in the present invention include, but are not limited to, chemotherapeutic agents (e.g. cis platin), ionizing radiation (X-rays, ultraviolet radiation), carcinogenic agents, and mutagenic agents.
In other embodiments, a cell is killed by treating the cell with at least one method to cause or induce DNA damage. Such methods include, but are not limited to, activation of a cell signalling pathway that results in DNA damage when the pathway is activated, inhibiting of a cell signalling pathway that results in DNA damage when the pathway is inhibited, and inducing a biochemical change in a cell, wherein the change results in DNA damage. By way of a non-limiting example, a DNA repair pathway in a cell can be inhibited, thereby preventing the repair of DNA damage and resulting in an abnormal accumulation of DNA damage in a cell.
In some embodiments, a compound of general formula (I) of the present invention is administered to a cell prior to the radiation or other induction of DNA damage in the cell. In some embodiments of the invention, a compound of general formula (I) of the present invention is administered to a cell concomitantly with the radiation or other induction of DNA damage in the cell. In yet some embodiments of the invention, a compound of general formula (I) of the present invention is administered to a cell after radiation or other induction of DNA damage in the cell has begun. In yet some embodiments of the invention, a compound of general formula (I) of the present invention is administered to a cell immediately after radiation or other induction of DNA damage in the cell has begun.
In some embodiments, the cell is in vitro. In another embodiment, the cell is in vivo.
Thus in some embodiments, the present invention includes a method of inhibiting proliferation of a cell and/or the induction of apoptosis in a cell, comprising contacting the cell with a compound of formula (I).
Another aspect of the invention is a method for treating, preventing or prophylaxing cancer (i.e. a method for the treatment, prevention or prophylaxis of cancer) in a subject (e.g., human, other mammal, such as rat, etc.) by administering an effective amount of at least one compound of general formula (I), or a pharmaceutically acceptable salt, polymorph, metabolite, hydrate, solvate or ester thereof to the subject.
In some embodiments, the subject may be administered a medicament, comprising at least one compound of general formula (I) and one or more pharmaceutically acceptable carriers, excipients and/or diluents.
Furthermore in some embodiments, the present invention includes a method of using a compound of general formula (I) for the treatment of diseases.
Particularly in some embodiments, the present invention includes a method of treating a hyperproliferative disease, more particularly cancer, comprising administering an effective amount of at least one compound of general formula (I) to a subject in need thereof.
Particularly in some embodiments, the present invention includes a method of treating a hyperproliferative disease, more particularly cancer, comprising administering an effective amount of at least one compound of general formula (I) having a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20 and/or a (DC50 CDK12) value which is equal or lower than 200 nM to a subject in need thereof.
In some embodiments, the method of treatment and/or prophylaxis of a hyperproliferative disorder in a subject may comprise administering to the subject an effective amount of a compound of general formula (I). The hyperproliferative disorder may be, for example, cancer (e.g., lung cancer, breast cancer, acute myeloid leukemia, lymphoma, glioblastoma, prostate cancer, etc.).
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly lymphoma, non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype, acute leukemia, acute myeloid leukemia type, multiple myeloma, ovarian cancer, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly multiple myeloma, ovarian carcinoma, acute monocytic leukemia, melanoma and lung cancer, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly breast cancer; lung cancer; lymphoma including non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype including GC-DLBCL* and ABC-DLBCL** subtypes, and mantle cell lymphoma; acute leukemia, acute myeloid leukemia type, acute monocytic leukemia; melanoma; multiple myeloma; ovarian cancer; and pancreas cancer, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof. GC-DLBCL means Germinal B-cell Diffuse Large B-Cell Lymphoma and ** ABC-DLBCL means Activated B-cell Diffuse Large B-Cell Lymphoma.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly breast cancer, lung cancer, diffuse large B-cell lymphoma subtype including GC-DLBCL* and ABC-DLBCL** subtypes, mantle cell lymphoma, acute monocytic leukemia, melanoma, ovarian cancer, and pancreas cancer comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof. Furthermore in some embodiments, the present invention provides a compound of formula (I) for use of treating diseases.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly breast cancer; lymphoma, leukemia, multiple myeloma; and ovarian cancer, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly lymphoma, non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype, acute leukemia, acute myeloid leukemia type, multiple myeloma, and ovarian cancer, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly breast cancer, lymphoma (including non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype, mantle cell lymphoma), leukemia (including acute monocytic leukemia), liver cancer, multiple myeloma, melanoma, non-small cell lung cancer, small cell lung cancer, ovarian cancer, ovarian carcinoma, stomach cancer, and squamous cell carcinoma, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly breast cancer, diffuse large B-cell lymphoma subtype, mantle cell lymphoma, acute monocytic leukemia, liver cancer, multiple myeloma, melanoma, non-small cell lung cancer, small cell lung cancer, ovarian cancer, ovarian carcinoma, prostate cancer, stomach cancer, and squamous cell carcinoma, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly bladder cancer, bone cancer, brain cancer, breast cancer, colon cancer (colorectal cancer), endometrial (uterine) cancer, gastric cancer, head and neck cancer, kidney cancer, leukemia, liver cancer, lung cancer, lymphoma, lung cancer, myeloma, neuroblastoma, ovarian cancer, pancreatic cancer, rhabdoid tumor, sarcoma and skin cancer, comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly breast cancer, liver cancer, lung cancer, ovarian cancer, endometrial cancer, cervical cancer, colorectal cancer, gastric cancer, esophageal cancer, bladder cancer, prostate cancer, sarcoma, glioblastoma and acute myeloid leukemia comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating cancer, particularly lung cancer, breast cancer, liver cancer, colorectal cancer, gastric cancer, prostate cancer and leukemia comprising administering an effective amount of at least one compound of formula (I) to a subject in need thereof.
Furthermore in some embodiments, the present invention includes a method of treating myotonic dystrophy type 1 (DM1) comprising administering an effective amount of at least one compound of general formula (I) to a subject in need thereof.
In accordance with some embodiments, the present invention provides compounds of general formula (I), as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same, for use in the treatment and/or prophylaxis of diseases, in particular hyperproliferative disorders.
In accordance with some embodiments, the present invention provides compounds of general formula (I) having a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20 and/or a (DC50 CDK12) value which is equal or lower than 200 nM, as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same, for use in the treatment and/or prophylaxis of diseases, in particular hyperproliferative disorders.
Furthermore in accordance with a further aspect, the present invention provides a compound of formula (I) for use of treating diseases. Furthermore in accordance with a further aspect, the present invention provides a compound of formula (I) having a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20 and/or a (DC50 CDK12) value which is equal or lower than 200 nM for use of treating diseases.
In in accordance with a further aspect, the present invention includes a compound of general formula (I) for use in a method of inhibiting proliferation of a cell and/or the induction of apoptosis in a cell, comprising contacting the cell with a compound of formula (I).
Particularly in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating a hyperproliferative disease, more particularly wherein the hyperproliferative disease is cancer, and yet even more particularly wherein the cancer disease is selected from lymphoma, non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype, ovarian cancer, multiple myeloma, acute leukemia, and acute myeloid leukemia.
More particularly in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating a hyperproliferative disease, more particularly wherein the hyperproliferative disease is cancer, and yet even more particularly wherein the cancer disease is selected from breast cancer; lymphoma, leukemia, multiple myeloma; and ovarian cancer.
Particularly in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating a hyperproliferative disease, more particularly wherein the hyperproliferative disease is cancer, and yet even more particularly wherein the cancer is selected from breast cancer; esophageal cancer; liver cancer; lung cancer; lymphoma including non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype including GC-DLBCL* and ABC-DLBCL** subtypes, and mantle cell lymphoma; acute leukemia, acute myeloid leukemia type, acute monocytic leukemia; melanoma; multiple myeloma; melanoma; ovarian cancer; or pancreas cancer.
More particularly in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating cancer wherein the cancer disease is selected from breast cancer; lymphoma, leukemia, multiple myeloma; and ovarian cancer.
More particularly in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating cancer wherein the cancer disease is selected from breast cancer, liver cancer, lung cancer, ovarian cancer, endometrial cancer, cervical cancer, colorectal cancer, gastric cancer, esophageal cancer, bladder cancer, prostate cancer, sarcoma, glioblastoma, and acute myeloid leukemia.
More particularly in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating cancer wherein the cancer disease is selected from lung cancer, breast cancer, liver cancer, colorectal cancer, gastric cancer, prostate cancer, and leukemia.
Furthermore in some embodiments, the present invention includes compounds of general formula (I) for use in a method of treating myotonic dystrophy type 1 (DM1).
In some embodiments, the present invention includes the use of the compounds of general formula (I) for the manufacture of a medicament for the treatment and/or prophylaxis of a hyperproliferative disease.
In some embodiments, the present invention includes the use of the compounds of general formula (I) for the manufacture of a medicament for the treatment and/or prophylaxis of a hyperproliferative disease, wherein the hyperproliferative disease is cancer.
In some embodiments, the present invention includes the use of the compounds of general formula (I) having a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20 and/or a (DC50 CDK12) value which is equal or lower than 200 nM for the manufacture of a medicament for the treatment and/or prophylaxis of a hyperproliferative disease.
In some embodiments, the present invention includes the use of the compounds of general formula (I) having a ratio (IC50 CDK12 hATP)/(DC50 CDK12) which is equal or greater than 20 and/or a (DC50 CDK12) value which is equal or lower than 200 nM for the manufacture of a medicament for the treatment and/or prophylaxis of a hyperproliferative disease, wherein the hyperproliferative disease is cancer.
In some embodiments, the present invention includes the use of the compounds of general formula (I) for the manufacture of a medicament for the treatment of a hyperproliferative disease, particularly cancer and more particularly lymphoma, non-Hodgkin-lymphoma type, diffuse large B-cell lymphoma subtype, ovarian cancer, multiple myeloma, acute leukemia, and acute myeloid leukemia type.
In some embodiments, the present invention includes the use of the compounds of general formula (I) for the manufacture of a medicament for the treatment of a hyperproliferative disease, particularly cancer and more particularly breast cancer, liver cancer, lung cancer, ovarian cancer, endometrial cancer, cervical cancer, colorectal cancer, gastric cancer, esophageal cancer, bladder cancer, prostate cancer, sarcoma, glioblastoma, and acute myeloid leukemia.
In some embodiments, the present invention includes the use of the compounds of general formula (I) for the manufacture of a medicament for the treatment of a hyperproliferative disease, particularly cancer and more particularly lung cancer, breast cancer, liver cancer, colorectal cancer, gastric cancer, prostate cancer, and leukemia.
In some embodiments, the present invention provides use of a compound of general formula (I), as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same, for the preparation of a pharmaceutical composition, preferably a medicament, for the prophylaxis or treatment of diseases, in particular hyperproliferative disorders, particularly cancer.
In some embodiments, the present invention provides use of a compound of general formula (I), as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same, for the preparation of a pharmaceutical composition, preferably a medicament, for the prophylaxis or treatment of diseases, in particular hyperproliferative disorders, particularly cancer, more particularly breast cancer, liver cancer, lung cancer, ovarian cancer, endometrial cancer, cervical cancer, colorectal cancer, gastric cancer, esophageal cancer, bladder cancer, prostate cancer, sarcoma, glioblastoma, and acute myeloid leukemia.
Furthermore in some embodiments, the present invention includes the use of the compounds of general formula (I) for the manufacture of a medicament for the treatment of myotonic dystrophy type 1 (DM1).
In some embodiments, the present invention provides a method of treatment and/or prophylaxis of diseases, in particular hyperproliferative disorders, particularly cancer, comprising administering an effective amount of a compound of general formula (I), as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same to a subject in need thereof.
In some embodiments, the present invention provides a method of treatment and/or prophylaxis of diseases, in particular hyperproliferative disorders, particularly cancer, more particularly breast cancer, liver cancer, lung cancer, ovarian cancer, endometrial cancer, cervical cancer, colorectal cancer, gastric cancer, esophageal cancer, bladder cancer, prostate cancer, sarcoma, glioblastoma, and acute myeloid leukemia comprising administering an effective amount of a compound of general formula (I), as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same to a subject in need thereof.
Furthermore in some embodiments, the present invention provides a method of treatment of myotonic dystrophy type 1 (DM1) comprising administering an effective amount of a compound of general formula (I), as described supra, or stereoisomers, tautomers, N-oxides, hydrates, solvates, and salts thereof, particularly pharmaceutically acceptable salts thereof, or mixtures of same to a subject in need thereof.
In some embodiments, the present invention provides pharmaceutical compositions, in particular a medicament, comprising a compound of general formula (I), as described supra, or a stereoisomer, a tautomer, an N-oxide, a hydrate, a solvate, a salt thereof, particularly a pharmaceutically acceptable salt, or a mixture of same, and one or more excipients), in particular one or more pharmaceutically acceptable excipient(s). Conventional procedures for preparing such pharmaceutical compositions in appropriate dosage forms can be utilized.
The present invention furthermore provides pharmaceutical compositions, in particular medicaments, which comprise at least one compound according to the invention, conventionally together with one or more pharmaceutically suitable excipients, and to their use for the above mentioned purposes.
It is possible for the compounds according to the invention to have systemic and/or local activity. For this purpose, they can be administered in a suitable manner, such as, for example, via the oral, parenteral, pulmonary, nasal, sublingual, lingual, buccal, rectal, vaginal, dermal, transdermal, conjunctival, otic route or as an implant or stent.
For these administration routes, it is possible for the compounds according to the invention to be administered in suitable administration forms.
For oral administration, it is possible to formulate the compounds according to the invention to dosage forms known in the art that deliver the compounds of the invention rapidly and/or in a modified manner, such as, for example, tablets (uncoated or coated tablets, for example with enteric or controlled release coatings that dissolve with a delay or are insoluble), orally-disintegrating tablets, films/wafers, films/lyophilisates, capsules (for example hard or soft gelatine capsules), sugar-coated tablets, granules, pellets, powders, emulsions, suspensions, aerosols or solutions. It is possible to incorporate the compounds according to the invention in crystalline and/or amorphised and/or dissolved form into said dosage forms.
Parenteral administration can be effected with avoidance of an absorption step (for example intravenous, intraarterial, intracardial, intraspinal or intralumbal) or with inclusion of absorption (for example intramuscular, subcutaneous, intracutaneous, percutaneous or intraperitoneal). Administration forms which are suitable for parenteral administration are, inter alia, preparations for injection and infusion in the form of solutions, suspensions, emulsions, lyophilisates or sterile powders.
Examples which are suitable for other administration routes are pharmaceutical forms for inhalation [inter alia powder inhalers, nebulizers], nasal drops, nasal solutions, nasal sprays; tablets/films/wafers/capsules for lingual, sublingual or buccal administration; suppositories; eye drops, eye ointments, eye baths, ocular inserts, ear drops, ear sprays, ear powders, ear-rinses, ear tampons; vaginal capsules, aqueous suspensions (lotions, mixturae agitandae), lipophilic suspensions, emulsions, ointments, creams, transdermal therapeutic systems (such as, for example, patches), milk, pastes, foams, dusting powders, implants or stents.
The compounds according to the invention can be incorporated into the stated administration forms. This can be effected in a manner known per se by mixing with pharmaceutically suitable excipients. Pharmaceutically suitable excipients include, inter alia,
The present invention furthermore relates to a pharmaceutical composition which comprise at least one compound according to the invention, conventionally together with one or more pharmaceutically suitable excipient(s), and to their use according to the present invention.
In some embodiments, the present invention provides pharmaceutical combinations, in particular medicaments, comprising at least one compound of general formula (I) of the present invention and at least one or more further active ingredients, in particular for the treatment and/or prophylaxis of a hyperproliferative disorder, particularly cancer.
Particularly, the present invention provides a pharmaceutical combination, which comprises:
The term “combination” in the present invention is used as known to persons skilled in the art, it being possible for said combination to be a fixed combination, a non-fixed combination or a kit-of-parts.
A “fixed combination” in the present invention is used as known to persons skilled in the art and is defined as a combination wherein, for example, a first active ingredient, such as one or more compounds of general formula (I) of the present invention, and a further active ingredient are present together in one unit dosage or in one single entity. One example of a “fixed combination” is a pharmaceutical composition wherein a first active ingredient and a further active ingredient are present in admixture for simultaneous administration, such as in a formulation. Another example of a “fixed combination” is a pharmaceutical combination wherein a first active ingredient and a further active ingredient are present in one unit without being in admixture.
A non-fixed combination or “kit-of-parts” in the present invention is used as known to persons skilled in the art and is defined as a combination wherein a first active ingredient and a further active ingredient are present in more than one unit. One example of a non-fixed combination or kit-of-parts is a combination wherein the first active ingredient and the further active ingredient are present separately. It is possible for the components of the non-fixed combination or kit-of-parts to be administered separately, sequentially, simultaneously, concurrently or chronologically staggered.
The compounds of the present invention can be administered as the sole pharmaceutical agent or in combination with one or more other pharmaceutically active ingredients where the combination causes no unacceptable adverse effects. The present invention also provides such pharmaceutical combinations. For example, the compounds of the present invention can be combined with known anti-cancer agents.
131I-chTNT, abarelix, abemaciclib, abiraterone, acalabrutinib, aclarubicin, adalimumab, ado-trastuzumab emtansine, afatinib, aflibercept, aldesleukin, alectinib, alemtuzumab, alendronic acid, alitretinoin, altretamine, amifostine, aminoglutethimide, hexyl aminolevulinate, amrubicin, amsacrine, anastrozole, ancestim, anethole dithiolethione, anetumab ravtansine, angiotensin II, antithrombin Ill, apalutamide, aprepitant, arcitumomab, arglabin, arsenic trioxide, asparaginase, atezolizumab, avelumab, axicabtagene ciloleucel, axitinib, azacitidine, basiliximab, belotecan, bendamustine, besilesomab, belinostat, bevacizumab, bexarotene, bicalutamide, bisantrene, bleomycin, blinatumomab, bortezomib, bosutinib, buserelin, brentuximab vedotin, brigatinib, busulfan, cabazitaxel, cabozantinib, calcitonine, calcium folinate, calcium levofolinate, capecitabine, capromab, carbamazepine carboplatin, carboquone, carfilzomib, carmofur, carmustine, catumaxomab, celecoxib, celmoleukin, ceritinib, cetuximab, chlorambucil, chlormadinone, chlormethine, cidofovir, cinacalcet, cisplatin, cladribine, clodronic acid, clofarabine, cobimetinib, copanlisib, crisantaspase, crizotinib, cyclophosphamide, cyproterone, cytarabine, dacarbazine, dactinomycin, daratumumab, darbepoetin alfa, dabrafenib, dasatinib, daunorubicin, decitabine, degarelix, denileukin diftitox, denosumab, depreotide, deslorelin, dianhydrogalactitol, dexrazoxane, dibrospidium chloride, dianhydrogalactitol, diclofenac, dinutuximab, docetaxel, dolasetron, doxifluridine, doxorubicin, doxorubicin + estrone, dronabinol, durvalumab, eculizumab, edrecolomab, elliptinium acetate, elotuzumab, eltrombopag, enasidenib, endostatin, enocitabine, enzalutamide, epirubicin, epitiostanol, epoetin alfa, epoetin beta, epoetin zeta, eptaplatin, eribulin, erlotinib, esomeprazole, estradiol, estramustine, ethinylestradiol, etoposide, everolimus, exemestane, fadrozole, fentanyl, filgrastim, fluoxymesterone, floxuridine, fludarabine, fluorouracil, flutamide, folinic acid, formestane, fosaprepitant, fotemustine, fulvestrant, gadobutrol, gadoteridol, gadoteric acid meglumine, gadoversetamide, gadoxetic acid, gallium nitrate, ganirelix, gefitinib, gemcitabine, gemtuzumab, Glucarpidase, glutoxim, GM-CSF, goserelin, granisetron, granulocyte colony stimulating factor, histamine dihydrochloride, histrelin, hydroxycarbamide, I-125 seeds, lansoprazole, ibandronic acid, ibritumomab tiuxetan, ibrutinib, idarubicin, ifosfamide, imatinib, imiquimod, improsulfan, indisetron, incadronic acid, ingenol mebutate, inotuzumab ozogamicin, interferon alfa, interferon beta, interferon gamma, iobitridol, iobenguane (123I), iomeprol, ipilimumab, irinotecan, Itraconazole, ixabepilone, ixazomib, lanreotide, lansoprazole, lapatinib, lasocholine, lenalidomide, lenvatinib, lenograstim, lentinan, letrozole, leuprorelin, levamisole, levonorgestrel, levothyroxine sodium, lisuride, lobaplatin, lomustine, lonidamine, lutetium Lu 177 dotatate, masoprocol, medroxyprogesterone, megestrol, melarsoprol, melphalan, mepitiostane, mercaptopurine, mesna, methadone, methotrexate, methoxsalen, methylaminolevulinate, methylprednisolone, methyltestosterone, metirosine, midostaurin, mifamurtide, miltefosine, miriplatin, mitobronitol, mitoguazone, mitolactol, mitomycin, mitotane, mitoxantrone, mogamulizumab, molgramostim, mopidamol, morphine hydrochloride, morphine sulfate, mvasi, nabilone, nabiximols, nafarelin, naloxone+pentazocine, naltrexone, nartograstim, necitumumab, nedaplatin, nelarabine, neratinib, neridronic acid, netupitant/palonosetron, nivolumab, pentetreotide, nilotinib, nilutamide, nimorazole, nimotuzumab, nimustine, nintedanib, niraparib, nitracrine, nivolumab, obinutuzumab, octreotide, ofatumumab, olaparib, olaratumab, omacetaxine mepesuccinate, omeprazole, ondansetron, oprelvekin, orgotein, orilotimod, osimertinib, oxaliplatin, oxycodone, oxymetholone, ozogamicine, p53 gene therapy, paclitaxel, palbociclib, palifermin, palladium-103 seed, palonosetron, pamidronic acid, panitumumab, panobinostat, pantoprazole, pazopanib, pegaspargase, PEG-epoetin beta (methoxy PEG-epoetin beta), pembrolizumab, pegfilgrastim, peginterferon alfa-2b, pembrolizumab, pemetrexed, pentazocine, pentostatin, peplomycin, Perflubutane, perfosfamide, Pertuzumab, picibanil, pilocarpine, pirarubicin, pixantrone, plerixafor, plicamycin, poliglusam, polyestradiol phosphate, polyvinylpyrrolidone+sodium hyaluronate, polysaccharide-K, pomalidomide, ponatinib, porfimer sodium, pralatrexate, prednimustine, prednisone, procarbazine, procodazole, propranolol, quinagolide, rabeprazole, racotumomab, radium-223 chloride, radotinib, raloxifene, raltitrexed, ramosetron, ramucirumab, ranimustine, rasburicase, razoxane, refametinib, regorafenib, ribociclib, risedronic acid, rhenium-186 etidronate, rituximab, rolapitant, romidepsin, romiplostim, romurtide, rucaparib, samarium (153Sm) lexidronam, sargramostim, sarilumab, satumomab, secretin, siltuximab, sipuleucel-T, sizofiran, sobuzoxane, sodium glycididazole, sonidegib, sorafenib, stanozolol, streptozocin, sunitinib, talaporfin, talimogene laherparepvec, tamibarotene, tamoxifen, tapentadol, tasonermin, teceleukin, technetium (99mTc) nofetumomab merpentan, 99mTc-HYNIC-[Tyr3]-octreotide, tegafur, tegafur+gimeracil+oteracil, temoporfin, temozolomide, temsirolimus, teniposide, testosterone, tetrofosmin, thalidomide, thiotepa, thymalfasin, thyrotropin alfa, tioguanine, tisagenlecleucel, tocilizumab, topotecan, toremifene, tositumomab, trabectedin, trametinib, tramadol, trastuzumab, trastuzumab emtansine, treosulfan, tretinoin, trifluridine + tipiracil, trilostane, triptorelin, trametinib, trofosfamide, thrombopoietin, tryptophan, ubenimex, valatinib, valrubicin, vandetanib, vapreotide, vemurafenib, vinblastine, vincristine, vindesine, vinflunine, vinorelbine, vismodegib, vorinostat, vorozole, yttrium-90 glass microspheres, zinostatin, zinostatin stimalamer, zoledronic acid and zorubicin.
Based upon standard laboratory techniques known to evaluate compounds useful for the treatment of hyperproliferative disorders, by standard toxicity tests and by standard pharmacological assays for the determination of treatment of the conditions identified above in mammals, and by comparison of these results with the results of known active ingredients or medicaments that are used to treat these conditions, the effective dosage of the compounds of the present invention can readily be determined for treatment of each desired indication. The amount of the active ingredient to be administered in the treatment of one of these conditions can vary widely according to such considerations as the particular compound and dosage unit employed, the mode of administration, the period of treatment, the age and sex of the patient treated, and the nature and extent of the condition treated.
The total amount of the active ingredient to be administered will generally range from about 0.001 mg/kg to about 200 mg/kg body weight per day, and preferably from about 0.01 mg/kg to about 20 mg/kg body weight per day. Clinically useful dosing schedules will range from one to three times a day dosing to once every four weeks dosing. In addition, it is possible for “drug holidays”, in which a patient is not dosed with a drug for a certain period of time, to be beneficial to the overall balance between pharmacological effect and tolerability. It is possible for a unit dosage to contain from about 0.5 mg to about 1500 mg of active ingredient, and can be administered one or more times per day or less than once a day. The average daily dosage for administration by injection, including intravenous, intramuscular, subcutaneous and parenteral injections, and use of infusion techniques will preferably be from 0.01 to 200 mg/kg of total body weight. The average daily rectal dosage regimen will preferably be from 0.01 to 200 mg/kg of total body weight. The average daily vaginal dosage regimen will preferably be from 0.01 to 200 mg/kg of total body weight. The average daily topical dosage regimen will preferably be from 0.1 to 200 mg administered between one to four times daily. The transdermal concentration will preferably be that required to maintain a daily dose of from 0.01 to 200 mg/kg. The average daily inhalation dosage regimen will preferably be from 0.01 to 100 mg/kg of total body weight.
Of course the specific initial and continuing dosage regimen for each patient will vary according to the nature and severity of the condition as determined by the attending diagnostician, the activity of the specific compound employed, the age and general condition of the patient, time of administration, route of administration, rate of excretion of the drug, drug combinations, and the like. The desired mode of treatment and number of doses of a compound of the present invention or a pharmaceutically acceptable salt or ester or composition thereof can be ascertained by those skilled in the art using conventional treatment tests.
To the extent NMR peak forms and multiplicities are specified, they are stated as they appear in the spectra, possible higher order effects have not been considered.
The 1H-NMR data of selected examples are listed in the form of 1H-NMR peaklists. For each signal peak the 5 value in ppm is given, followed by the signal intensity, reported in round brackets. The 5 value-signal intensity pairs from different peaks are separated by commas. Therefore, a peaklist is described by the general form: δ1 (intensity1), δ2 (intensity2), . . . , δi (intensityi), . . . , δn (intensityn).
The intensity of a sharp signal correlates with the height (in cm) of the signal in a printed NMR spectrum. When compared with other signals, this data can be correlated to the real ratios of the signal intensities. In the case of broad signals, more than one peak, or the center of the signal along with their relative intensity, compared to the most intense signal displayed in the spectrum, are shown. A 1H-NMR peaklist is similar to a classical 1H-NMR readout, and thus usually contains all the peaks listed in a classical NMR interpretation. Moreover, similar to classical 1H-NMR printouts, peaklists can show solvent signals, signals derived from stereoisomers of target compounds (also the subject of the invention), and/or peaks of impurities. The peaks of stereoisomers, and/or peaks of impurities are typically displayed with a lower intensity compared to the peaks of the target compounds (e.g., with a purity of >90%). Such stereoisomers and/or impurities may be typical for the particular manufacturing process, and therefore their peaks may help to identify the reproduction of our manufacturing process on the basis of “by-product fingerprints”. An expert who calculates the peaks of the target compounds by known methods (MestReC, ACD simulation, or by use of empirically evaluated expectation values), can isolate the peaks of target compounds as required, optionally using additional intensity filters. Such an operation would be similar to peak-picking in classical 1H-NMR interpretation. A detailed description of the reporting of NMR data in the form of peaklists can be found in the publication “Citation of NMR Peaklist Data within patent applications” (cf. Research Disclosure Database Number 605005, 2014, 1 Aug. 2014, or http://www.researchdisclosure.com/searching-disclosures). In the peak picking routine, as described in the Research Disclosure Database Number 605005, the parameter “MinimumHeight” can be adjusted between 1% and 4%. Depending on the chemical structure and/or depending on the concentration of the measured compound it may be reasonable to set the parameter “MinimumHeight”<1%.
The following table lists the abbreviations used in this paragraph and in the Intermediates and Examples section as far as they are not explained within the text body. Other abbreviations have their meanings customary per se to the skilled person. A comprehensive list of the abbreviations utilized by organic chemists of ordinary skill in the art appears presented in the first issue of each volume of the Journal of Organic Chemistry; this list is typically presented in a table titled “Standard List of Abbreviations”. In case of doubt, the abbreviations and/or their meaning according to the following table shall prevail.
Other abbreviations have their meanings customary per se to the skilled person.
The various aspects of the invention described in this application are illustrated by the following examples which are not meant to limit the invention in any way.
The example testing experiments described herein serve to illustrate the present invention and the invention is not limited to the examples given.
All reagents, for which the synthesis is not described in the experimental part, are either commercially available, or are known compounds or may be formed from known compounds by known methods by a person skilled in the art. Reactions were set up and started, e.g. by the addition of reagents, at temperatures as specified in the protocols; if no temperature is specified, the respective working step was performed at ambient temperature, i.e. between 18 and 25° C.
“Silicone filter” or “water resistant filter” refers to filter papers which are made hydrophobic (impermeable to water) by impregnation with a silicone. With the aid of these filters, water can be separated from water-immiscible organic solvents by means of a filtration (i.e. filter paper type MN 617 WA, Macherey-Nagel).
The compounds and intermediates produced according to the methods of the invention may require purification. Purification of organic compounds is well known to the person skilled in the art and there may be several ways of purifying the same compound. In some cases, no purification may be necessary. In some cases, the compounds may be purified by crystallization. In some cases, impurities may be removed by trituration using a suitable solvent or solvent mixture. In some cases, the compounds may be purified by chromatography, particularly flash column chromatography, using for example prepacked silica gel cartridges, e.g. Biotage SNAP cartridges KP-Sil® or KP-NH® in combination with a Biotage autopurifier system (SP4© or Isolera Four®) and eluents such as gradients of hexane/ethyl acetate or DCM/ethanol. In flash column chromatography, unmodified (“regular”) silica gel may be used as well as aminophase functionalized silica gel. As used herein, “Biotage SNAP cartridge silica” refers to the use of regular silica gel; “Biotage SNAP cartridge NH2 silica” refers to the use of aminophase functionalized silica gel. If reference is made to flash column chromatography or to flash chromatography in the experimental section without specification of a stationary phase, regular silica gel was used.
In some cases, the compounds may be purified by preparative HPLC using for example a Waters autopurifier equipped with a diode array detector and/or on-line electrospray ionization mass spectrometer in combination with a suitable prepacked reverse phase column and eluents such as gradients of water and acetonitrile which may contain additives such as trifluoroacetic acid, formic acid, diethylamine or aqueous ammonia.
In some cases, purification methods as described above can provide those compounds of the present invention which possess a sufficiently basic or acidic functionality in the form of a salt, such as, in the case of a compound of the present invention which is sufficiently basic, a trifluoroacetate or formate salt for example, or, in the case of a compound of the present invention which is sufficiently acidic, an ammonium salt for example. A salt of this type can either be transformed into its free base or free acid form, respectively, by various methods known to the person skilled in the art, or be used as salts in subsequent biological assays. It is to be understood that the specific form (e.g. salt, free base etc.) of a compound of the present invention as isolated and as described herein is not necessarily the only form in which said compound can be applied to a biological assay in order to quantify the specific biological activity.
UPLC-MS Standard Procedures
Analytical UPLC-MS was performed as described below. The masses (m/z) are reported from the positive mode electrospray ionisation unless the negative mode is indicated (ESI−).
Analytical UPLC Methods:
Method 1:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7 μm, 50×2.1 mm; eluent A: water+0.1 vol % formic acid (99%), eluent B: acetonitrile; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow 0.8 mL/min; temperature: 60° C.; DAD scan: 210-400 nm.
Method 2:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7 μm, 50×2.1 mm; eluent A: water+0.2 vol % aqueous ammonia (32%), eluent B: acetonitrile; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow 0.8 mL/min; temperature: 60° C.; DAD scan: 210-400 nm.
Method 3:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7 μm, 50×2.1 mm; eluent A: water+0.2 vol % aqueous ammonia (32%), eluent B: acetonitrile; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow 0.8 mL/min; temperature: 60° C.; DAD scan: 210-400 nm.
Method HT Acidic:
Instrument: Waters Autopurificationsystem; Column: Waters XBrigde C18 5μ 100×30 mm; eluent A: water+0.1 vol % formic acid (99%), eluent B: acetonitrile; gradient; DAD scan: 210-400 nm.
Method HT Basic:
Instrument: Waters Autopurificationsystem; Colum: Waters XBrigde C18 5μ 100×30 mm; eluent A: water+0.2 vol % aqueous ammonia (32%), eluent B: acetonitrile; gradient; DAD scan: 210-400 nm.
Specific Optial Rotation Methods:
Method 01: Instrument: JASCO P2000 Polarimeter; wavelength 589 nm; temperature: 20° C.; integration time 10 s; path length 100 mm.
UPLC-MS Standard Procedures
Analytical UPLC-MS was performed as described below. The masses (m/z) are reported from the positive mode electrospray ionisation unless the negative mode is indicated (ESI−).
Analytical UPLC Methods:
Method 1:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7 μm, 50×2.1 mm; eluent A: water+0.1 vol % formic acid (99%), eluent B: acetonitrile; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow 0.8 mL/min; temperature: 60° C.; DAD scan: 210-400 nm.
Method 2:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7 μm, 50×2.1 mm; eluent A: water+0.2 vol % aqueous ammonia (32%), eluent B: acetonitrile; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow 0.8 mL/min; temperature: 60° C.; DAD scan: 210-400 nm.
Method 3:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7 μm, 50×2.1 mm; eluent A: water+0.2 vol % aqueous ammonia (32%), eluent B: acetonitrile; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow 0.8 mL/min; temperature: 60° C.; DAD scan: 210-400 nm.
Method HT Acidic:
Instrument: Waters Autopurificationsystem; Column: Waters XBrigde C18 5μ 100×30 mm; eluent A: water+0.1 vol % formic acid (99%), eluent B: acetonitrile; gradient; DAD scan: 210-400 nm.
Method HT Basic:
Instrument: Waters Autopurificationsystem; Colum: Waters XBrigde C18 5μ 100×30 mm; eluent A: water+0.2 vol % aqueous ammonia (32%), eluent B: acetonitrile; gradient; DAD scan: 210-400 nm.
Specific Optial Rotation Methods:
Method 01: Instrument: JASCO P2000 Polarimeter; wavelength 589 nm; temperature: 20° C.; integration time 10 s; path length 100 mm.
2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (1.00 g, 4.09 mmol, see Dudfield, Philip J.; Le, Van-Due; Lindell, Stephen D.; Rees, Charles W. Journal of the Chemical Society. Perkin transactions I, 1999, #20, p. 2929-2936) was provided in dimethylformamide (20 mL), 1-bromopyrrolidine-2,5-dione (729 mg, 4.09 mmol, CAS 128-08-5) was added and the mixture was stirred for 16 h at 60° C. The reaction mixture was concentrated under reduced pressure and dichloromethane and water were added. The phases were separated and the aqueous phase was extracted with a mixture of dichloromethane/isopropanol 8/2. The combined organic layer was dried by filtration over a water repellent filter and concentrated under reduced pressure to give 1.52 g (crude) of the title compound, which was used without further purification.
LC-MS (Method 2): Rt=0.85 min; MS (ESIpos): m/z=323 [M+H]+
7-bromo-2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 1, 120 mg, 371 μmol) and 1-(1H-benzimidazol-2-yl)methanamine dihydrochloride (123 mg, 557 μmol, CAS 5993-91-9) were dissolved in acetonitrile (5.6 mL), N,N-diisopropylethylamine (320 μL, 1.9 mmol) was added and the mixture was stirred overnight at 70° C. in a sealed tube. The mixture was concentrated under reduced pressure to give 300 mg (crude) of the title compound, which was used without further purification.
LC-MS (Method 2): Rt=0.87 min; MS (ESIpos): m/z=422 [M+H]+
7-bromo-2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 1, 200 mg, 619 μmol) and 1-(4,5-difluoro-1H-benzimidazol-2-yl)methanamine dihydrochloride (158 mg, 619 μmol; CAS 1201769-17-6) were dissolved in acetonitrile (1.7 mL), N,N-diisopropylethylamine (220 μL, 1.2 mmol) was added and the mixture was stirred for 3.5 h at 70° C. and overnight at room temperature. The mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient) to give 143 mg (50% yield) of the title compound.
LC-MS (Method 1): Rt=0.95 min; MS (ESIpos): m/z=458 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.038 (1.52), 1.055 (3.28), 1.073 (1.37), 2.326 (0.52), 2.330 (0.74), 2.334 (0.52), 2.521 (2.24), 2.526 (1.65), 2.542 (0.50), 2.668 (0.54), 2.672 (0.76), 2.676 (0.52), 3.246 (16.00), 3.405 (1.24), 5.035 (2.45), 5.762 (3.82), 7.198 (0.72), 7.218 (1.61), 7.224 (1.22), 7.234 (1.76), 7.969 (6.14), 10.225 (0.54), 12.674 (0.68).
7-bromo-2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 1, 500 mg, 1.55 mmol) and 1-(4-fluoro-1H-benzimidazol-2-yl)methanamine dihydrochloride (506 mg, 80% purity, 1.70 mmol, CAS 2089257-74-7; see also Davies, David Thomas; Jones, Graham Elgin; Peightfoot, Andrew; Markwell, Roger Edward; Pearson, Neil David US2004/38998, 2004, A1) were provided in acetonitrile (50 mL), N,N-diisopropylethylamine (670 μL, 3.9 mmol) was added and the mixture was stirred for one day at 80° C. The mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient) to give 553 mg (45% yield) of the title compound.
LC-MS (Method 2): Rt=0.89 min; MS (ESIpos): m/z=440 [M+H]+
2-(methanesulfinyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (2.40 g, 10.5 mmol, can be isolated as a side product when synthesizing 2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine, see Dudfield, Philip J.; Le, Van-Due; Lindell, Stephen D.; Rees, Charles W. Journal of the Chemical Society. Perkin transactions I, 1999, #20, p. 2929-2936) was provided in dimethylformamide (58 mL), 1-bromopyrrolidine-2,5-dione (3.74 g, 21.0 mmol; CAS 128-08-5) was added and the mixture was stirred for 75 min at 60° C. The reaction mixture poured into water and stirred for 2 h at rt. The resulting precipitate was filtered off, washed with water and dried to give 2.74 g (84% yield) of the title compound.
LC-MS (Method 2): Rt=0.76 min; MS (ESIpos): m/z=307 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: −0.008 (0.49), 0.008 (0.46), 2.521 (0.91), 2.525 (0.62), 2.722 (15.57), 2.764 (0.46), 3.023 (16.00), 3.483 (0.51), 8.061 (5.71).
7-bromo-2-(methanesulfinyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 5, 200 mg, 651 μmol) and 1-(4-methoxy-1H-benzimidazol-2-yl)methanamine hydrochloride (153 mg, 716 μmol, CAS 93227-24-8) were provided in acetonitrile (21 mL), N,N-diisopropylethylamine (340 μl, 2.0 mmol) was added and the mixture was stirred for 2 h at 130° C. in the microwave. The mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient) to give 310 mg of the title compound.
LC-MS (Method 2): Rt=0.85 min; MS (ESIpos): m/z=436 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.904 (0.42), 1.154 (1.35), 1.172 (2.92), 1.190 (1.50), 1.232 (0.60), 1.987 (5.13), 2.331 (0.55), 2.518 (2.52), 2.522 (1.61), 2.673 (0.56), 2.770 (7.09), 2.884 (0.95), 2.935 (0.42), 3.887 (16.00), 3.999 (0.45), 4.017 (1.24), 4.035 (1.27), 4.053 (0.42), 4.942 (1.59), 4.962 (1.06), 5.759 (7.04), 6.633 (0.70), 6.653 (0.78), 6.730 (0.50), 6.749 (0.56), 6.965 (0.58), 6.984 (0.92), 7.034 (0.86), 7.054 (1.31), 7.073 (0.61), 7.124 (0.65), 7.144 (0.43), 7.814 (0.41), 7.867 (1.19), 7.882 (1.76), 12.193 (0.49).
2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (1.00 g, 4.09 mmol, see Dudfield, Philip J.; Le, Van-Due; Lindell, Stephen D.; Rees, Charles W. Journal of the Chemical Society. Perkin transactions I, 1999, #20, p. 2929-2936) was provided in dimethylformamide (10 mL), 1-iodopyrrolidine-2,5-dione (1.84 g, 8.19 mmol) was added and the mixture was stirred for overnight at 100° C. 1-iodopyrrolidine-2,5-dione (0.92 g, 4.10 mmol) was added and the mixture was stirred for 72 h at 100° C. The reaction mixture was concentrated under reduced pressure and dichloromethane and water were added. The phases were separated and the organic phase dried over sodium sulfate, filtered and concentrated. The residue was purified by flash chromatography (silica, dichloromethane/ethylacetate gradient) to give 470 mg (31% yield) of the title compound.
LC-MS (Method 1): Rt=0.87 min; MS (ESIpos): m/z=371 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 2.523 (4.01), 2.750 (12.74), 3.485 (16.00), 6.892 (4.50), 8.117 (6.23).
7-iodo-2-(methanesulfonyl)-4-(methylsulfanyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 7, 1.00 g, 2.70 mmol) and copper(I) iodide (2.06 g, 10.8 mmol; CAS-RN:[7681-65-4]) was provided in dimethylformamide (15 mL), difluoro(fluorosulfonyl)acetate (1.4 ml, 11 mmol; CAS-RN:[680-15-9]) was added and the mixture was stirred for 16 h at 80° C. under argon. The reaction mixture was concentrated under reduced pressure and purified by flash chromatography (silica, dichloromethane/ethylacetate gradient) to give 575 mg (68% yield) of the title compound.
LC-MS (Method 1): Rt=0.96 min; MS (ESIpos): m/z=313 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 2.786 (16.00), 3.329 (15.56), 8.533 (2.89).
2-(methanesulfonyl)-4-(methylsulfanyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 8, 600 mg, 1.92 mmol) and 1-(1H-benzimidazol-2-yl)methanamine (311 mg, 2.11 mmol) were provided in acetonitrile (20 mL), N,N-diisopropylethylamine (840 μl, 4.8 mmol) was added and the mixture was stirred for 18 h at 60° C. The mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethylacetate gradient) to give 280 mg (33% yield) of the title compound.
LC-MS (Method 1): Rt=0.79 min; MS (ESIpos): m/z=412 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.154 (3.11), 1.172 (6.78), 1.190 (3.47), 1.987 (10.93), 2.395 (0.89), 2.518 (3.81), 2.522 (2.73), 3.261 (16.00), 3.401 (0.73), 3.999 (0.87), 4.017 (2.65), 4.035 (2.62), 4.053 (0.87), 5.057 (4.90), 7.133 (0.76), 7.143 (1.15), 7.155 (1.30), 7.165 (0.91), 7.404 (0.58), 7.422 (0.58), 7.549 (0.59), 7.566 (0.53), 8.379 (2.16), 8.381 (2.31), 12.226 (0.73).
2-(methanesulfonyl)-4-(methylsulfanyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazine (Intermediate 8, 103 mg, 330 μmol) and 1-(4,5-difluoro-1H-benzimidazol-2-yl)methanamine hydrogen chloride (84.5 mg, 330 μmol; CAS-RN:[1201597-24-1]) were provided in acetonitrile (5 mL), N,N-diisopropylethylamine (230 μl, 1.3 mmol) was added at 0° C. and the mixture was allowed to warm up to room temperature and was stirred for 4 days. The mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (silica, dichloromethane/ethylacetate gradient; silica aminophase, dichloromethane/ethylacetate/ethanol gradient) to give 80 mg (54% yield) of the title compound.
LC-MS (Method 1): Rt=1.01 min; MS (ESIpos): m/z=448 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.154 (2.08), 1.172 (4.33), 1.190 (2.12), 1.988 (7.33), 2.385 (0.87), 2.518 (4.39), 2.523 (3.11), 3.255 (16.00), 3.402 (0.70), 3.999 (0.56), 4.017 (1.68), 4.035 (1.64), 4.053 (0.54), 5.061 (5.01), 7.200 (0.63), 7.218 (0.73), 7.228 (0.88), 7.243 (0.74), 8.389 (2.41).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 2, 640 mg, 1.52 mmol) was suspended in morpholine (2.6 ml, 30 mmol; CAS 110-91-8) and was stirred for 2.5 h at 165° C. in the microwave. The mixture was concentrated under reduced pressure and dichloromethane and water were added. The phases were separated and the aqueous phase was extracted with a mixture of dichloromethane/isopropanol 8/2. The combined organic phases were dried over a water repellent filter and concentrated under reduced pressure. The residue was suspended in dichloromethane, the precipitate was filtered off, washed with dichloromethane and dried under reduced pressure to give 440 mg (61% yield) of the title compound. The filtrate was purified by flash chromatography using silica gel (amino phase, dichloromethane/ethanol gradient) to give 160 mg (25% yield) of the title compound.
LC-MS (Method 1): Rt=0.83 min; MS (ESIpos): m/z=429 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.027 (0.83), 1.042 (0.83), 1.232 (0.75), 1.352 (0.38), 2.336 (1.43), 2.423 (3.85), 2.518 (16.00), 2.523 (10.42), 2.660 (1.43), 3.449 (4.98), 3.461 (4.68), 3.503 (4.75), 3.516 (5.06), 4.872 (2.87), 4.922 (0.83), 7.127 (2.34), 7.400 (0.68), 7.552 (13.51), 7.709 (2.11), 8.551 (0.45), 9.169 (0.83), 12.193 (0.98).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(morpholin-4-yl)imidazo[2,1-f][1,2,4]triazin-4-amine (Example 1, 100 mg, 233 μmol), zinc (15.2 mg, 233 μmol; CAS 7440-66-6), zinc cyanide (16.4 mg, 140 μmol; CAS 557-21-1), 1,1′-bis(diphenylphosphanyl)ferrocene (5.17 mg, 9.32 μmol; CAS 12150-46-8) and tris(dibenzylidenaceton)dipalladium (4.27 mg, 4.66 μmol; CAS-RN 52409-22-0) were suspended in N,N-dimethylacetamide (2.5 mL), sealed in a vessel and flushed with argon. The mixture was stirred for 15 min in the microwave at 150° C. The mixture was treated with dichloromethane and water and the phases were separated. The aqueous phase was extracted with a mixture of dichloromethane/isopropanol 8/2. The combined organic phases were dried over a water repellent filter and concentrated under reduced pressure. The residue was purified by preparative HPLC (HT acidic) to give 24.5 mg (27% yield) of the title compound.
Analytical HPLC: Rt=0.68 min
LC-MS (Method 1): Rt=0.76 min; MS (ESIpos): m/z=376 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.852 (0.47), 1.232 (1.23), 2.327 (2.09), 2.331 (1.55), 2.336 (0.69), 2.518 (8.88), 2.523 (5.60), 2.669 (2.17), 2.673 (1.55), 2.678 (0.69), 3.461 (6.32), 3.473 (8.05), 3.500 (7.95), 3.507 (5.71), 3.512 (6.36), 4.885 (5.31), 4.899 (5.24), 7.113 (1.81), 7.123 (2.67), 7.136 (2.85), 7.145 (1.99), 7.391 (1.37), 7.408 (1.26), 7.521 (1.37), 7.540 (1.23), 8.206 (16.00), 9.517 (1.08), 9.532 (2.28), 9.546 (1.08), 12.223 (1.70).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(morpholin-4-yl)imidazo[2,1-f][1,2,4]triazin-4-amine (Example 1, 100 mg, 233 μmol), (3-fluorophenyl)boronic acid (65.2 mg, 466 μmol, CAS 768-35-4), and tetrakis(triphenylphosphin)palladium (0) (13.5 mg, 11.6 μmol; CAS 14221-01-3) were provided in dimethylformamide (3.0 mL), sealed in a vessel and flushed with argon. To the mixture was added aqueous sodium carbonate solution (350 μl, 2.0 M, 700 μmol). The reaction mixture was stirred for 3 h in the microwave at 150° C. The mixture was treated with dichloromethane and water and the phases were separated. The aqueous phase was extracted with a mixture of dichloromethane/isopropanol 8/2. The combined organic phases were dried over a water repellent filter and concentrated under reduced pressure. The residue was purified by preparative HPLC (HT acidic) to give 16.1 mg (15% yield) of the title compound.
LC-MS (Method 1): Rt=0.99 min; MS (ESIpos): m/z=445 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.231 (0.57), 2.331 (0.74), 2.518 (4.00), 2.522 (2.46), 2.539 (2.65), 2.673 (0.76), 3.455 (3.62), 3.466 (6.60), 3.478 (6.32), 3.495 (0.53), 3.545 (6.20), 3.557 (6.72), 3.568 (3.72), 4.896 (4.99), 4.911 (5.03), 7.096 (0.59), 7.110 (2.29), 7.114 (1.91), 7.119 (2.76), 7.125 (3.60), 7.132 (3.03), 7.137 (2.10), 7.141 (2.72), 7.145 (1.22), 7.154 (1.50), 7.169 (1.72), 7.174 (1.83), 7.190 (1.00), 7.195 (1.03), 7.393 (1.93), 7.400 (1.19), 7.409 (1.72), 7.414 (1.58), 7.497 (1.17), 7.512 (1.72), 7.517 (2.76), 7.526 (1.91), 7.532 (2.91), 7.536 (2.43), 7.542 (1.83), 7.552 (1.41), 8.011 (2.64), 8.013 (2.33), 8.032 (16.00), 8.039 (2.22), 8.043 (1.45), 8.061 (1.48), 8.067 (1.71), 8.071 (1.34), 9.133 (1.17), 9.147 (2.58), 9.161 (1.17), 12.225 (2.50).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 2, 100 mg, 237 μmol) and cis-2,6-dimethylmorpholine (44 μl, 360 μmol, CAS 6485-55-8) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (100 μl, 590 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 1 h at 180° C., for 1 h at 200° C. and further 6 h at 180° C. The reaction mixture concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient) to give 44.0 mg (37% yield) of the title compound.
LC-MS (Method 2): Rt=1.15 min; MS (ESIpos): m/z=457 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.800 (0.92), 0.817 (0.91), 0.824 (0.88), 0.842 (0.52), 0.854 (0.55), 0.888 (0.49), 0.906 (0.96), 0.925 (0.54), 0.937 (2.02), 0.954 (2.13), 0.998 (15.97), 1.013 (16.00), 1.025 (2.78), 1.037 (1.07), 1.040 (2.16), 1.054 (1.16), 1.072 (0.68), 1.234 (2.20), 1.908 (1.01), 2.254 (1.94), 2.280 (2.51), 2.286 (2.43), 2.324 (1.67), 2.329 (2.20), 2.333 (1.51), 2.338 (0.69), 2.520 (7.96), 2.524 (5.17), 2.542 (1.64), 2.676 (1.49), 3.232 (2.11), 3.373 (1.33), 3.378 (1.52), 3.388 (1.52), 3.394 (1.71), 3.398 (1.65), 3.405 (1.51), 3.414 (1.28), 3.420 (1.18), 3.436 (0.48), 4.080 (2.84), 4.108 (2.76), 4.850 (4.57), 4.864 (4.54), 7.089 (0.77), 7.102 (2.44), 7.106 (2.28), 7.111 (2.70), 7.118 (4.71), 7.125 (3.09), 7.130 (2.52), 7.134 (2.76), 7.142 (0.53), 7.148 (1.08), 7.370 (2.08), 7.378 (1.31), 7.387 (1.97), 7.392 (1.68), 7.506 (1.94), 7.512 (1.90), 7.521 (1.14), 7.527 (1.90), 7.546 (13.02), 7.817 (0.46), 7.819 (0.42), 8.359 (0.44), 8.362 (0.47), 9.161 (1.06), 9.175 (2.24), 9.189 (1.00), 12.213 (2.62).
7-bromo-N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 3, 72.0 mg, 157 μmol) and cis-2,6-dimethylmorpholine (29 μl, 240 μmol, CAS 6485-55-8) were provided in acetonitrile (1.7 mL). N,N-diisopropylethylamine (68 μl, 390 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient) to give 31.0 mg (36% yield) of the title compound.
LC-MS (Method 2): Rt=1.20 min; MS (ESIpos): m/z=493 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.800 (0.66), 0.817 (0.74), 0.824 (0.75), 0.842 (0.44), 0.854 (0.40), 0.888 (0.40), 0.906 (0.76), 0.925 (0.44), 0.993 (15.75), 1.008 (16.00), 1.037 (4.15), 1.055 (7.57), 1.072 (4.04), 1.234 (1.44), 1.895 (0.64), 2.213 (1.97), 2.241 (2.55), 2.245 (2.53), 2.273 (2.00), 2.338 (0.78), 2.520 (13.99), 2.525 (9.05), 3.366 (2.56), 3.372 (2.50), 3.392 (1.66), 3.413 (0.93), 3.430 (1.12), 3.448 (1.08), 3.465 (0.44), 4.028 (2.95), 4.056 (2.84), 4.838 (3.65), 4.850 (3.69), 5.761 (0.54), 7.139 (0.52), 7.160 (1.32), 7.178 (1.47), 7.188 (1.91), 7.203 (1.80), 7.554 (11.35), 9.238 (1.26).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 2, 93.0 mg, 220 μmol) and 1-methylpiperazine (33.1 mg, 330 μmol; CAS 109-01-3) were provided in acetonitrile (2.3 mL). N,N-diisopropylethylamine (96 μl, 550 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (silica, dichloromethane/ethanol gradient; amino phase silica ethylacetate/ethanol gradient). The product was stirred with dichloromethane. The resulting solid was filtered off and washed with dichloromethane to give 30.0 mg (28% yield) of the title compound.
LC-MS (Method 2): Rt=1.04 min; MS (ESIpos): m/z=442 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.215 (1.80), 2.669 (2.81), 2.729 (8.94), 2.888 (3.50), 3.034 (3.25), 4.291 (2.99), 4.320 (3.05), 5.193 (5.23), 7.551 (4.78), 7.649 (2.96), 7.773 (4.63), 15.623 (16.00).
7-bromo-N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 3, 70.0 mg, 153 μmol) and morpholine (14 μl, 230 μmol; CAS 110-91-8) were provided in acetonitrile (1.7 mL). N,N-diisopropylethylamine (67 μl, 380 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 11 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (silica, dichloromethane/ethanol gradient; amino phase silica ethylacetate/ethanol gradient) to give 12.0 mg (17% yield) of the title compound.
LC-MS (Method 2): Rt=1.06 min; MS (ESIpos): m/z=465 [M+H]+
1H-NMR (500 MHz, DMSO-d6) δ[ppm]: 1.248 (0.47), 1.971 (0.68), 2.499 (1.42), 2.502 (1.16), 2.506 (0.94), 3.057 (16.00), 3.473 (0.50), 3.491 (0.79), 3.532 (0.74), 3.540 (0.92), 3.549 (0.50), 7.492 (1.99).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 2, 100.0 mg, 237 μmol) and piperazine (30.6 mg, 355 μmol; CAS 110-85-0) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (100 μl, 590 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient). The product was stirred with a mixture of hexane and ethylacetate. The resulting solid was filtered off and dried to give 26.0 mg (25% yield) of the title compound.
LC-MS (Method 2): Rt=0.89 min; MS (ESIpos): m/z=428 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: −0.008 (2.10), 0.008 (2.07), 0.816 (0.67), 0.834 (1.53), 0.839 (0.96), 0.853 (1.53), 0.861 (1.15), 0.938 (0.54), 0.955 (0.54), 1.087 (0.41), 1.175 (0.57), 1.193 (0.41), 1.232 (4.27), 1.262 (1.08), 1.398 (0.70), 1.711 (0.89), 1.750 (0.41), 1.990 (1.24), 2.290 (0.89), 2.325 (1.43), 2.329 (1.94), 2.334 (1.43), 2.525 (5.51), 2.564 (6.25), 2.577 (8.19), 2.589 (6.37), 2.667 (1.50), 2.671 (2.01), 2.676 (1.50), 3.389 (7.04), 3.402 (8.64), 3.413 (6.53), 4.862 (8.16), 7.107 (5.13), 7.115 (5.10), 7.122 (5.20), 7.130 (5.58), 7.139 (1.21), 7.453 (1.34), 7.525 (16.00), 9.097 (0.86), 12.246 (0.76).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 2, 100.0 mg, 237 μmol) and cis-2,6-dimethylpiperazine (40.6 mg, 355 μmol; CAS 21655-48-1) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (100 μl, 590 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient). The product was stirred with acetonitrile. The resulting solid was filtered off and dried to give 34.0 mg (31% yield) of the title compound.
LC-MS (Method 2): Rt=1.00 min; MS (ESIpos): m/z=456 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: −0.008 (2.49), 0.008 (2.33), 0.854 (1.00), 0.880 (10.96), 0.895 (11.02), 1.037 (0.40), 1.169 (0.59), 1.235 (1.28), 1.909 (0.44), 2.077 (1.43), 2.155 (1.56), 2.180 (1.06), 2.320 (0.68), 2.324 (1.40), 2.329 (1.84), 2.334 (1.37), 2.338 (0.68), 2.520 (6.07), 2.525 (4.14), 2.578 (1.28), 2.662 (0.72), 2.666 (1.37), 2.671 (1.90), 2.676 (1.37), 2.680 (0.65), 4.130 (2.65), 4.158 (2.55), 4.839 (5.07), 4.852 (5.01), 7.085 (0.90), 7.099 (3.39), 7.103 (2.99), 7.106 (3.67), 7.114 (5.60), 7.122 (4.33), 7.125 (3.08), 7.130 (3.64), 7.143 (1.09), 7.366 (2.68), 7.373 (1.71), 7.382 (2.33), 7.387 (2.15), 7.504 (2.46), 7.509 (2.43), 7.518 (1.59), 7.527 (2.80), 7.532 (16.00), 9.125 (1.43), 12.207 (3.64).
7-bromo-N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 3, 100 mg, 218 μmol) and piperazine (28.2 mg, 327 μmol; CAS 110-85-0) were provided in acetonitrile (2.3 mL). N,N-diisopropylethylamine (95 μl, 550 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient). The product was stirred with a mixture of hexane and ethylacetate. The resulting solid was filtered off and dried to give 27.6 mg (25% yield) of the title compound.
LC-MS (Method 2): Rt=0.94 min; MS (ESIpos): m/z=464 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: −0.008 (4.21), 0.816 (0.92), 0.833 (1.90), 0.854 (1.59), 0.938 (0.51), 0.955 (0.51), 1.157 (0.62), 1.175 (1.23), 1.193 (0.72), 1.232 (2.67), 1.397 (0.56), 1.825 (1.18), 1.990 (2.56), 2.289 (0.67), 2.325 (2.46), 2.329 (3.18), 2.334 (2.46), 2.545 (9.54), 2.557 (12.05), 2.569 (9.23), 2.667 (2.51), 2.671 (3.33), 2.676 (2.62), 2.753 (0.46), 3.371 (11.74), 3.383 (13.13), 3.395 (9.74), 3.508 (0.82), 4.020 (0.56), 4.037 (0.56), 4.843 (11.28), 7.113 (1.33), 7.135 (2.46), 7.141 (1.85), 7.153 (2.51), 7.163 (2.56), 7.180 (2.56), 7.197 (3.38), 7.206 (3.79), 7.218 (2.15), 7.229 (1.74), 7.529 (16.00), 7.546 (0.77), 9.097 (1.23).
7-bromo-N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 3, 100 mg, 218 μmol) and cis-2,6-dimethylpiperazine (37.4 mg, 327 μmol; CAS 21655-48-1) were provided in acetonitrile (2.3 mL). N,N-diisopropylethylamine (95 μl, 550 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica, dichloromethane/ethanol gradient). The product was stirred with ethylacetate. The resulting solid was filtered off and purified by flash chromatography (amino phase silica, dichloromethane/acetone gradient) to give 22.0 mg (19% yield) of the title compound.
LC-MS (Method 2): Rt=1.05 min; MS (ESIpos): m/z=492 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: −0.008 (3.34), 0.008 (2.62), 0.832 (15.37), 0.847 (15.45), 1.140 (12.33), 1.233 (0.89), 2.020 (1.90), 2.048 (3.25), 2.079 (2.36), 2.087 (13.13), 2.099 (0.76), 2.118 (5.74), 2.339 (0.80), 2.481 (6.84), 2.521 (8.44), 2.525 (5.53), 2.681 (0.76), 4.032 (2.70), 4.037 (2.87), 4.062 (2.83), 4.068 (2.62), 4.561 (1.94), 4.817 (4.14), 4.828 (4.09), 7.127 (0.51), 7.149 (1.44), 7.166 (1.56), 7.177 (2.03), 7.191 (1.86), 7.529 (16.00), 9.153 (1.39).
7-bromo-N-[(4-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 4, 132 mg, 165 μmol) and morpholine (21.6 mg, 247 μmol; CAS 110-91-8) were provided in acetonitrile (1.7 mL). N,N-diisopropylethylamine (72 μl, 410 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (amino phase silica, dichloromethane/ethylacetate gradient; amino phase silica, dichloromethane/ethanol gradient) and preparative HPLC (HT basic) to give 5.2 mg (7% yield) of the title compound.
LC-MS (Method 2): Rt=1.06 min; MS (ESIpos): m/z=447 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.743 (0.43), 0.832 (0.44), 0.850 (0.65), 1.151 (1.16), 1.230 (3.59), 2.332 (0.74), 2.522 (3.04), 2.669 (0.99), 2.673 (0.73), 3.392 (0.49), 3.434 (7.61), 3.443 (11.98), 3.455 (9.62), 3.500 (11.02), 3.512 (11.44), 4.874 (9.14), 4.888 (9.14), 6.907 (2.19), 6.925 (2.84), 6.934 (2.36), 6.953 (2.68), 6.977 (0.49), 6.997 (0.71), 7.003 (0.52), 7.023 (0.65), 7.079 (0.46), 7.090 (1.83), 7.101 (2.06), 7.109 (3.73), 7.121 (3.57), 7.129 (2.16), 7.142 (1.88), 7.224 (6.03), 7.244 (4.33), 7.365 (1.08), 7.385 (0.93), 7.548 (3.51), 7.556 (16.00), 9.152 (0.76), 9.203 (1.71), 9.218 (3.52), 9.232 (1.66), 12.514 (3.32), 12.864 (0.94).
7-bromo-2-(methanesulfinyl)-N-[(4-methoxy-1H-benzimidazol-2-yl)methyl]imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 6, 60.0 mg, 138 μmol) and morpholine (18 μl, 210 μmol; CAS 110-91-8) were provided in acetonitrile (1.5 mL). N,N-diisopropylethylamine (60 μl, 340 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. Additional morpholine (100 μl) was added and the mixture was stirred for further 5 h at 190° C. in the microwave. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient). The product was stirred with a mixture of ethylacetate and hexane. The resulting solid was filtered off, washed with hexane and dried under reduced pressure to give 37.0 mg (57% yield) of the title compound.
LC-MS (Method 2): Rt=1.05 min; MS (ESIpos): m/z=459 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.831 (0.89), 0.836 (0.51), 0.853 (0.62), 1.154 (0.44), 1.172 (0.84), 1.190 (0.41), 1.988 (1.52), 2.327 (1.02), 2.332 (0.75), 2.518 (3.76), 2.523 (2.39), 2.669 (1.06), 2.673 (0.76), 3.460 (7.32), 3.472 (6.51), 3.515 (6.45), 3.527 (7.05), 3.887 (16.00), 3.898 (10.44), 4.035 (0.43), 4.838 (4.05), 4.850 (4.02), 6.624 (1.83), 6.642 (1.94), 6.722 (1.36), 6.741 (1.51), 6.970 (1.47), 6.988 (2.63), 7.018 (1.19), 7.022 (2.37), 7.038 (2.42), 7.041 (3.20), 7.057 (1.41), 7.061 (1.33), 7.109 (1.82), 7.128 (1.13), 7.534 (4.12), 7.547 (6.29), 9.041 (0.63), 9.149 (0.87), 12.171 (1.62), 12.527 (0.95).
7-bromo-2-(methanesulfinyl)-N-[(4-methoxy-1H-benzimidazol-2-yl)methyl]imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 6, 60.0 mg, 138 μmol) and cis-2,6-dimethylpiperazine (47.1 mg, 413 μmol; CAS-RN 108-49-6) were provided in acetonitrile (1.5 mL). N,N-diisopropylethylamine (190 μl, 1.1 mmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 8 h at 200° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient). The product was stirred with a mixture of ethylacetate and hexane. The resulting solid was filtered off, washed with hexane and dried under reduced pressure to give 46.0 mg (62% yield) of the title compound.
LC-MS (Method 2): Rt=1.01 min; MS (ESIpos): m/z=486 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.814 (0.45), 0.831 (1.09), 0.836 (0.87), 0.841 (0.70), 0.853 (1.51), 0.858 (2.08), 0.868 (8.80), 0.883 (13.32), 0.898 (6.36), 0.930 (0.49), 0.936 (0.63), 0.947 (1.41), 0.952 (0.89), 0.963 (1.30), 0.998 (0.49), 1.013 (0.45), 1.154 (1.25), 1.172 (2.32), 1.190 (1.10), 1.237 (0.71), 1.751 (3.83), 1.967 (0.58), 1.988 (4.57), 2.076 (1.89), 2.104 (3.12), 2.133 (2.11), 2.336 (0.46), 2.432 (1.22), 2.518 (5.50), 2.523 (4.69), 3.876 (16.00), 3.882 (10.60), 4.000 (0.44), 4.017 (1.08), 4.035 (1.22), 4.053 (0.50), 4.109 (2.20), 4.140 (2.05), 4.805 (4.35), 6.611 (1.72), 6.630 (1.91), 6.707 (1.26), 6.726 (1.41), 6.950 (1.39), 6.968 (2.36), 7.009 (2.24), 7.028 (3.42), 7.046 (1.66), 7.092 (1.75), 7.112 (1.07), 7.504 (3.42), 7.518 (5.18), 8.981 (0.47), 9.072 (0.63), 12.180 (1.58), 12.509 (0.84).
7-bromo-2-(methanesulfinyl)-N-[(4-methoxy-1H-benzimidazol-2-yl)methyl]imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 6, 60.0 mg, 138 μmol) and piperazine (35.5 mg, 413 μmol; CAS 110-85-0) were provided in acetonitrile (1.5 mL). N,N-diisopropylethylamine (72 μl, 410 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 8 h at 200° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient). The product was stirred with a mixture of ethylacetate and hexane. The resulting solid was filtered off, washed with hexane and dried under reduced pressure to give 30.0 mg (43% yield) of the title compound.
LC-MS (Method 2): Rt=0.91 min; MS (ESIpos): m/z=458 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.851 (0.46), 1.154 (1.34), 1.172 (2.61), 1.190 (1.32), 1.232 (1.01), 1.972 (0.86), 1.987 (5.25), 2.318 (0.66), 2.322 (1.34), 2.326 (1.84), 2.331 (1.33), 2.336 (0.66), 2.518 (6.66), 2.522 (4.45), 2.577 (6.12), 2.589 (8.36), 2.600 (6.26), 2.649 (3.00), 2.659 (0.83), 2.664 (1.48), 2.668 (1.93), 2.673 (1.42), 2.678 (0.71), 3.397 (6.92), 3.409 (8.56), 3.421 (6.53), 3.889 (16.00), 3.999 (0.42), 4.017 (1.17), 4.035 (1.23), 4.828 (7.91), 6.619 (1.74), 6.638 (1.92), 6.718 (1.16), 6.737 (1.27), 6.965 (1.31), 6.985 (2.49), 7.015 (3.29), 7.035 (5.21), 7.055 (2.57), 7.105 (1.55), 7.125 (0.96), 7.508 (2.78), 7.520 (4.54), 9.060 (0.46), 12.168 (1.25), 12.517 (0.44).
7-bromo-2-(methanesulfinyl)-N-[(4-methoxy-1H-benzimidazol-2-yl)methyl]imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 6, 60.0 mg, 138 μmol) and 1-methylpiperazine (46 μl, 410 μmol; CAS 109-01-3) were provided in acetonitrile (1.5 mL). N,N-diisopropylethylamine (72 μl, 410 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 8 h at 200° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient) and by preparative chromatography to give 15.0 mg (21% yield) of the title compound.
Instrument: Waters Autopurificationsystem; Column: Chromatorex C18-DE 7μ, 100×30 mm; eluent A: water+0.1 vol % formic acid; eluent B: acetonitril; gradient: 0.0-0.5 min 5% B (35-70 ml/min), 0.5-5.5 min 5-35% B; flow: 70 ml/min; temperature: 25° C.; DAD scan: 210-400 nm
Analytical HPLC Method:
Instrument: Waters Acquity UPLCMS SingleQuad; Column: Acquity UPLC BEH C18 1.7μ, 50×2.1 mm; eluent A: water+0.1 vol % formic acid; eluent B: acetonitril; gradient: 0-1.6 min 1-99% B, 1.6-2.0 min 99% B; flow: 0.8 ml/min; temperature: 60° C.; DAD scan: 210-400 nm
Analytical HPLC: Rt=0.62 min
LC-MS (Method 2): Rt=1.02 min; MS (ESIpos): m/z=472 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 2.126 (13.11), 2.218 (4.28), 2.331 (0.91), 2.336 (0.41), 2.518 (4.09), 2.523 (2.68), 2.539 (9.28), 2.673 (0.92), 2.678 (0.41), 3.332 (1.44), 3.470 (3.57), 3.483 (4.60), 3.493 (3.39), 4.828 (4.29), 4.843 (4.24), 5.759 (7.65), 7.018 (1.89), 7.037 (3.01), 7.057 (1.51), 7.526 (4.92), 8.149 (16.00).
N-[(1H-benzimidazol-2-yl)methyl]-7-bromo-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (Intermediate 2, 93.0 mg, 220 μmol) and (2S)-piperidin-2-yl]methanol (38.0 mg, 330 μmol; CAS-RN:[41373-39-1] were provided in acetonitrile (2.3 mL). N,N-diisopropylethylamine (96 μl, 550 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (silica, dichloromethane/ethanol gradient; amino-phase silica ethylacetate/ethanol gradient) to give 16.0 mg (14% yield) of the title compound.
LC-MS (Method 2): Rt=1.11 min; MS (ESIpos): m/z=457 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.854 (0.48), 1.156 (4.44), 1.174 (8.55), 1.193 (4.19), 1.235 (1.85), 1.379 (0.47), 1.393 (0.66), 1.405 (0.51), 1.412 (0.49), 1.426 (0.56), 1.438 (0.45), 1.493 (1.08), 1.533 (0.94), 1.565 (0.77), 1.750 (0.69), 1.776 (1.07), 1.990 (16.00), 2.003 (0.46), 2.320 (0.44), 2.520 (5.64), 2.525 (3.54), 2.542 (0.48), 2.662 (0.50), 2.819 (0.70), 3.232 (0.63), 3.517 (1.20), 3.534 (1.62), 3.548 (1.26), 4.002 (1.19), 4.020 (3.55), 4.037 (3.49), 4.055 (1.11), 4.289 (0.55), 4.321 (0.53), 4.683 (0.67), 4.700 (0.67), 4.794 (1.19), 4.809 (1.68), 4.821 (0.60), 4.833 (1.31), 4.849 (1.14), 4.900 (1.15), 4.914 (1.19), 4.940 (0.65), 4.954 (0.59), 7.111 (1.39), 7.120 (1.77), 7.127 (2.18), 7.134 (2.00), 7.138 (1.31), 7.142 (1.67), 7.156 (0.42), 7.401 (1.22), 7.418 (1.00), 7.423 (0.90), 7.481 (0.43), 7.500 (9.69), 7.520 (1.08), 7.524 (1.08), 7.541 (1.03), 9.009 (0.67), 9.024 (1.39), 9.038 (0.62), 12.133 (1.33).
7-bromo-N-[(4-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfinyl)imidazo[2,1-f][1,2,4]triazin-4-amine (200 mg, 335 μmol, produced in analogy to intermediate 9) and cis-2,6-dimethylpiperazine (57.3 mg, 502 μmol) were provided in acetonitrile (3.5 mL). N,N-diisopropylethylamine (150 μl, 840 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 200° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient) and by preparative HPLC to give 55.5 mg (33% yield) of the title compound.
LC-MS (Method 2): Rt=1.02 min; MS (ESIpos): m/z=474 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.858 (15.84), 0.874 (16.00), 1.230 (0.54), 2.078 (1.50), 2.084 (3.10), 2.107 (2.67), 2.136 (1.67), 2.336 (0.52), 2.518 (6.66), 2.522 (5.09), 2.539 (3.54), 2.678 (0.49), 4.082 (3.35), 4.109 (3.26), 4.830 (5.58), 4.843 (5.58), 6.892 (1.17), 6.912 (1.60), 6.920 (1.41), 6.940 (1.48), 7.072 (1.24), 7.084 (1.48), 7.093 (2.53), 7.105 (2.77), 7.112 (1.52), 7.125 (1.50), 7.197 (3.03), 7.217 (2.13), 7.532 (11.31), 9.171 (1.36), 12.517 (1.74).
7-bromo-N-[(5-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (103 mg, 235 μmol, produced in analogy to intermediate 7) and cis-2,6-dimethylpiperazine (40.2 mg, 352 μmol) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (100 μl, 590 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (amino phase silica, dichloromethane/ethanol gradient; silica dichloromethane/ethanol gradient) and by preparative HPLC to give 14.5 mg (12% yield) of the title compound.
LC-MS (Method 2): Rt=1.00 min; MS (ESIpos): m/z=474 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.797 (2.98), 0.802 (1.46), 0.814 (3.14), 0.821 (3.18), 0.840 (1.81), 0.851 (0.98), 0.885 (1.87), 0.904 (3.83), 0.922 (2.99), 0.958 (7.75), 1.035 (7.85), 1.052 (16.00), 1.070 (8.42), 1.108 (0.61), 1.141 (0.79), 1.160 (0.90), 1.232 (3.74), 1.549 (0.55), 2.170 (0.45), 2.190 (0.47), 2.210 (0.66), 2.230 (0.71), 2.322 (1.99), 2.327 (2.45), 2.331 (1.89), 2.359 (0.87), 2.373 (0.85), 2.388 (0.84), 2.394 (0.93), 2.407 (0.77), 2.413 (1.04), 2.518 (10.86), 2.522 (7.91), 2.665 (1.61), 2.669 (2.09), 2.673 (1.68), 2.729 (0.83), 3.404 (1.09), 3.422 (2.36), 3.434 (2.52), 3.439 (2.41), 3.452 (2.36), 3.469 (0.81), 4.170 (1.96), 4.197 (1.90), 4.348 (1.24), 4.360 (2.36), 4.373 (1.19), 4.832 (4.64), 5.759 (0.68), 6.935 (0.63), 6.942 (0.70), 6.963 (1.72), 6.989 (1.96), 7.009 (0.90), 7.015 (0.84), 7.155 (1.15), 7.162 (1.23), 7.178 (1.28), 7.184 (1.21), 7.293 (1.31), 7.299 (1.41), 7.319 (1.37), 7.324 (1.39), 7.348 (1.31), 7.360 (1.43), 7.369 (1.32), 7.382 (1.26), 7.493 (1.14), 7.505 (1.24), 7.515 (1.16), 7.527 (1.14), 7.551 (10.88), 9.210 (1.19), 12.334 (2.01), 12.352 (2.28).
7-bromo-N-[(5-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (103 mg, 235 μmol, produced in analogy to intermediate 7) and morpholine (31 μl, 350 μmol) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (100 μl, 590 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient) and by HPLC (HT basic) to give 18.5 mg (17% yield) of the title compound.
LC-MS (Method 2): Rt=1.05 min; MS (ESIpos): m/z=447 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 2.074 (5.67), 2.084 (3.53), 2.518 (3.76), 2.522 (2.40), 3.444 (6.43), 3.507 (5.62), 3.517 (6.60), 4.857 (3.57), 6.969 (0.97), 6.992 (1.06), 7.014 (0.43), 7.180 (0.58), 7.199 (0.60), 7.312 (0.68), 7.333 (0.67), 7.363 (0.58), 7.375 (0.65), 7.384 (0.61), 7.397 (0.55), 7.502 (0.50), 7.514 (0.59), 7.523 (0.53), 7.536 (0.56), 7.551 (16.00), 9.185 (1.02), 12.316 (0.48).
7-bromo-N-[(5-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)imidazo[2,1-f][1,2,4]triazin-4-amine (103 mg, 235 μmol, produced in analogy to intermediate 7) and 1-methylpiperazine (39 μl, 350 μmol) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (100 μl, 590 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (amino phase silica, dichloromethane/ethanol gradient; silica dichloromethane/ethanol gradient) and by HPLC (HT basic) to give 14.1 mg (12% yield) of the title compound.
LC-MS (Method 2): Rt=1.00 min; MS (ESIpos): m/z=460 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.797 (1.76), 0.802 (0.90), 0.814 (1.93), 0.821 (2.02), 0.839 (1.14), 0.850 (0.62), 0.885 (0.94), 0.904 (1.99), 0.922 (0.98), 1.035 (3.15), 1.052 (6.46), 1.070 (3.21), 1.141 (0.57), 1.160 (0.53), 1.231 (2.99), 2.214 (4.64), 2.327 (3.79), 2.331 (3.52), 2.406 (0.95), 2.412 (1.02), 2.523 (6.35), 2.665 (1.03), 2.669 (1.46), 2.673 (1.06), 3.450 (2.01), 3.499 (3.54), 4.363 (0.47), 4.847 (5.10), 4.860 (5.11), 6.968 (1.52), 6.993 (1.64), 7.013 (0.66), 7.179 (0.89), 7.197 (0.91), 7.310 (1.08), 7.334 (1.06), 7.360 (0.87), 7.372 (0.97), 7.515 (0.89), 7.547 (16.00), 9.169 (1.90), 12.311 (1.70), 12.326 (1.92).
7-bromo-N-[(4-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfinyl)imidazo[2,1-f][1,2,4]triazin-4-amine (200 mg, 471 μmol, produced in analogy to intermediate 9) and piperazine (60.9 mg, 707 μmol) were provided in acetonitrile (3.0 mL). N,N-diisopropylethylamine (210 μl, 1.2 mmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 200° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (amino phase silica, dichloromethane/ethanol gradient) and by preparative HPLC (HT basic) to give 29.3 mg (13% yield) of the title compound.
LC-MS (Method 2): Rt=0.90 min; MS (ESIpos): m/z=446 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.231 (0.84), 2.539 (5.29), 2.607 (7.74), 4.864 (6.77), 6.933 (1.39), 6.957 (1.11), 7.081 (1.48), 7.094 (1.68), 7.101 (3.12), 7.113 (3.15), 7.121 (2.00), 7.134 (1.74), 7.233 (1.16), 7.535 (16.00), 8.262 (1.74), 9.164 (1.05).
7-bromo-N-[(4-fluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfinyl)imidazo[2,1-f][1,2,4]triazin-4-amine (179 mg, 422 μmol, produced in analogy to intermediate 9) and 1-methylpiperazine (70 μl, 630 μmol) were provided in acetonitrile (3.0 mL). N,N-diisopropylethylamine (210 μl, 1.2 mmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 10 h at 200° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (amino phase silica, dichloromethane/ethanol gradient; silica dichloromethane/ethanol gradient) and by preparative HPLC to give 51.9 mg (27% yield) of the title compound.
LC-MS (Method 2): Rt=1.03 min; MS (ESIpos): m/z=460 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.851 (0.44), 1.232 (2.39), 1.752 (4.22), 2.111 (16.00), 2.190 (7.21), 2.518 (8.68), 2.523 (6.32), 3.457 (7.52), 4.861 (7.76), 4.876 (7.87), 5.759 (4.01), 6.905 (1.88), 6.925 (2.36), 6.932 (2.00), 6.952 (2.29), 6.973 (0.44), 6.994 (0.56), 7.020 (0.52), 7.086 (1.52), 7.098 (1.90), 7.106 (3.17), 7.118 (3.21), 7.125 (1.86), 7.138 (1.76), 7.219 (5.20), 7.238 (3.76), 7.363 (0.87), 7.383 (0.82), 7.534 (2.59), 7.542 (14.44), 9.114 (0.57), 9.161 (1.36), 9.175 (2.88), 9.188 (1.41), 12.513 (2.80), 12.860 (0.80).
N-[(1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (80.0 mg, 194 μmol, Intermediate 9) and cis-2,6-dimethylpiperazine (33.3 mg, 292 μmol) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (85 μl, 490 μmol; CAS 7087-68-5) was added and the mixture was stirred in the microwave for 6 h at 180° C. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography to give 39.3 mg (41% yield) of the title compound.
LC-MS (Method 2): Rt=1.07 min; MS (ESIpos): m/z=446 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.872 (15.70), 0.888 (16.00), 2.074 (4.72), 2.172 (2.06), 2.200 (3.21), 2.231 (2.39), 2.518 (3.94), 2.522 (2.52), 2.539 (2.38), 2.573 (1.61), 2.589 (2.05), 4.078 (3.33), 4.083 (3.54), 4.109 (3.44), 4.115 (3.21), 4.867 (4.74), 7.096 (1.01), 7.106 (6.30), 7.114 (5.84), 7.121 (6.08), 7.129 (7.15), 7.139 (1.21), 7.447 (2.20), 7.931 (6.73), 7.933 (6.98), 8.210 (13.65), 9.410 (1.15).
N-[(1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (90.0 mg, 219 μmol, Intermediate 9) and 1-methylpiperazine (36 μl, 330 μmol; CAS-RN:[109-01-3]) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (95 μl, 550 μmol; CAS 7087-68-5) was added and the mixture was stirred over night at 100° C. 1-Methylpiperazine (120 μl, 1.10 mmol; CAS-RN:[109-01-3]) was added and the mixture was stirred for 2 h at 100° C. The reaction mixture was concentrated under reduced pressure. The residue was purified flash chromatographies (amino phase silica, dichloromethane/ethanol gradient; silica dichloromethane/ethanol gradient) to give 52.0 mg (52% yield) of the title compound.
LC-MS (Method 2): Rt=0.64 min; MS (ESIneg): m/z=430 [M−H]−
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.902 (0.51), 1.035 (1.74), 1.053 (2.95), 1.070 (1.81), 1.231 (0.41), 2.066 (0.69), 2.102 (16.00), 2.169 (3.42), 2.181 (5.12), 2.193 (3.58), 2.518 (4.25), 2.523 (2.82), 3.417 (0.57), 3.422 (1.39), 3.431 (3.44), 3.435 (3.73), 3.440 (4.70), 3.443 (4.52), 3.452 (3.60), 3.455 (3.38), 3.469 (0.55), 4.343 (0.45), 4.355 (0.88), 4.368 (0.42), 4.880 (3.96), 4.894 (3.91), 5.759 (1.32), 7.095 (0.54), 7.109 (2.11), 7.114 (1.70), 7.118 (2.41), 7.125 (3.37), 7.132 (2.58), 7.136 (1.81), 7.141 (2.37), 7.155 (0.64), 7.380 (1.68), 7.386 (1.02), 7.396 (1.51), 7.401 (1.33), 7.518 (1.46), 7.523 (1.47), 7.532 (0.88), 7.539 (1.40), 7.933 (4.49), 7.935 (4.67), 9.373 (0.82), 9.387 (1.71), 9.402 (0.80), 12.193 (2.15).
N-[(1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (90.0 mg, 219 μmol, Intermediate 9) and morpholine (29 μl, 330 μmol; CAS-RN:[110-91-8]) were provided in acetonitrile (2.5 mL). N,N-diisopropylethylamine (95 μl, 550 μmol; CAS 7087-68-5) was added and the mixture was stirred over night at 100° C. Morpholine (97 μl, 1.10 mmol; CAS-RN:[110-91-8]) was added and the mixture was stirred for 3 h at 100° C. The reaction mixture was concentrated under reduced pressure. The residue was purified flash chromatography (silica dichloromethane/ethanol gradient) to give 30.0 mg (29% yield) of the title compound.
LC-MS (Method 1): Rt=0.93 min; MS (ESIpos): m/z=419 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.851 (0.72), 1.144 (0.43), 1.172 (0.53), 1.232 (3.03), 1.352 (0.41), 1.988 (0.92), 2.332 (3.51), 2.336 (1.53), 2.518 (16.00), 2.522 (10.56), 2.673 (3.54), 2.678 (1.49), 2.729 (0.75), 2.888 (0.95), 3.255 (2.00), 3.357 (0.96), 3.368 (1.54), 3.381 (1.55), 3.392 (0.93), 3.418 (4.63), 3.429 (9.06), 3.440 (8.46), 3.496 (8.25), 3.508 (9.35), 3.518 (5.62), 3.530 (0.97), 3.559 (1.14), 3.572 (1.11), 3.584 (0.94), 4.890 (6.43), 4.905 (6.38), 7.098 (0.98), 7.112 (3.43), 7.116 (2.79), 7.121 (3.76), 7.128 (5.73), 7.135 (4.23), 7.140 (3.07), 7.144 (3.95), 7.158 (1.19), 7.384 (2.83), 7.391 (1.80), 7.401 (2.76), 7.406 (2.25), 7.519 (2.47), 7.524 (2.52), 7.534 (1.52), 7.540 (2.45), 7.951 (7.29), 7.953 (7.59), 8.022 (0.83), 9.426 (1.28), 9.440 (2.62), 9.454 (1.25), 12.194 (3.31).
N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (90.0 mg, 201 μmol, Intermediate 10) and morpholine (88 μl, 1.0 mmol; CAS-RN:[110-91-8]) were provided in acetonitrile (4.0 mL). N,N-diisopropylethylamine (210 μl, 1.2 mmol; CAS 7087-68-5) was added and the mixture was stirred for 1 h at 150° C. in the microwave. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatography (silica dichloromethane/ethylacetate gradient) to give 27.0 mg (27% yield) of the title compound.
LC-MS (Method 1): Rt=1.24 min; MS (ESIpos): m/z=455 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 1.154 (1.01), 1.172 (2.06), 1.190 (1.04), 1.231 (1.53), 1.987 (3.34), 2.318 (1.10), 2.322 (2.53), 2.327 (3.47), 2.332 (2.59), 2.336 (1.13), 2.518 (14.20), 2.522 (8.77), 2.649 (1.04), 2.660 (1.99), 2.664 (3.13), 2.669 (3.86), 2.673 (3.47), 2.678 (1.20), 3.185 (0.95), 3.253 (0.69), 3.408 (8.47), 3.418 (15.80), 3.431 (15.28), 3.447 (1.34), 3.481 (2.51), 3.497 (15.39), 3.509 (16.00), 3.520 (8.68), 4.017 (0.68), 4.035 (0.70), 4.893 (8.13), 4.901 (8.11), 5.759 (2.64), 7.154 (1.26), 7.176 (3.10), 7.193 (3.26), 7.204 (4.08), 7.219 (3.20), 7.955 (12.20), 7.957 (12.53), 9.486 (1.91), 12.640 (0.65).
N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (90.0 mg, 201 μmol, Intermediate 10) and 1-methylpiperazine (50 μl, 450 μmol; CAS-RN:[109-01-3]) were provided in acetonitrile (4.4 mL). N,N-diisopropylethylamine (230 μl, 1.3 mmol; CAS 7087-68-5) was added and the mixture was stirred for 2 h at 150° C. in the microwave. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (silica dichloromethane/ethylacetate/ethanol gradient; silica aminophase dichloromethane/ethanol/hexane gradient) to give 19.0 mg (17% yield) of the title compound.
LC-MS (Method 2): Rt=1.15 min; MS (ESIpos): m/z=468 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.814 (0.56), 0.831 (1.30), 0.836 (0.49), 0.852 (0.66), 0.858 (0.78), 0.936 (1.44), 0.953 (1.50), 1.237 (0.94), 1.259 (0.62), 1.395 (1.79), 2.099 (16.00), 2.150 (3.43), 2.162 (5.10), 2.174 (3.57), 2.332 (1.28), 2.336 (0.58), 2.518 (6.58), 2.522 (4.13), 2.673 (1.24), 2.678 (0.55), 3.413 (3.49), 3.426 (4.63), 3.437 (3.42), 4.875 (3.23), 4.888 (3.24), 7.149 (0.43), 7.171 (1.12), 7.188 (1.18), 7.199 (1.49), 7.214 (1.17), 7.940 (4.75), 9.440 (0.96).
N-[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (90.0 mg, 201 μmol, Intermediate 10) and cis-2,6-dimethylpiperazine (51.1 mg, 447 μmol; CAS-RN:[21655-48-1]) were provided in acetonitrile (4.4 mL). N,N-diisopropylethylamine (230 μl, 1.3 mmol; CAS 7087-68-5) was added and the mixture was stirred for 2 h at 150° C. in the microwave. The reaction mixture was concentrated under reduced pressure. The residue was purified by flash chromatographies (silica dichloromethane/ethylacetate/ethanol gradient; silica aminophase dichloromethane/ethanol/hexane gradient) to give 36.0 mg (32% yield) of the title compound.
LC-MS (Method 2): Rt=1.14 min; MS (ESIpos): m/z=482 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.812 (15.90), 0.827 (16.00), 0.840 (2.48), 0.852 (1.74), 0.857 (3.93), 0.868 (0.91), 0.874 (1.18), 0.936 (0.65), 0.952 (0.71), 1.237 (2.18), 1.274 (0.55), 2.031 (1.94), 2.059 (3.25), 2.088 (2.36), 2.336 (0.55), 2.435 (1.92), 2.518 (6.59), 2.522 (4.18), 2.660 (0.57), 3.974 (3.17), 3.979 (3.41), 4.005 (3.32), 4.010 (3.10), 4.846 (4.79), 7.135 (0.55), 7.157 (1.69), 7.174 (1.84), 7.185 (2.23), 7.926 (7.11), 9.421 (1.24).
N-[(1H-benzimidazol-2-yl)methyl]-2-(methanesulfonyl)-7-(trifluoromethyl)imidazo[2,1-f][1,2,4]triazin-4-amine (80.0 mg, 194 μmol, Intermediate 9) and 1-amino-2-methyl-propan-2-ol (68 μl, 580 μmol) were provided in acetonitrile (3.0 mL). N,N-diisopropylethylamine (100 μl, 580 μmol; CAS 7087-68-5) was added and the mixture was stirred over night at 70° C. and in the microwave for 11 h at 150° C. The reaction mixture was concentrated and purified by preparative HPLC (HT acidic) to give 16.3 mg (18% yield) of the title compound.
LC-MS (Method 1): Rt=0.93 min; MS (ESIpos): m/z=435 [M+H]+
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 0.844 (3.38), 1.146 (0.98), 2.331 (0.48), 2.518 (2.75), 2.523 (1.75), 2.673 (0.50), 2.982 (0.64), 3.013 (16.00), 3.369 (5.96), 3.433 (0.42), 4.368 (1.82), 4.854 (2.52), 4.869 (2.50), 7.101 (1.32), 7.107 (1.86), 7.124 (2.05), 7.129 (1.44), 7.370 (0.79), 7.502 (0.83), 7.903 (3.78), 8.142 (1.32), 9.266 (0.77), 9.281 (1.61), 9.295 (0.74), 12.197 (1.07).
1H-pyrazol-5-amine (58.7 g, 706 mmol; CAS 1820-80-0) was dissolved in ethyl acetate (420 mL), under nitrogen, and stirred at 75° C. Ethyl carbonisothiocyanatidate (88 mL, 750 mmol; CAS 16182-04-0) was added dropwise at 75° C. and the mixture was stirred for 1 h at 75° C. The mixture was cooled to 0° C., filtered, washed with ethyl acetate and the solid was dried under reduced pressure at 50° C. to give 124 g (77% yield) of ethyl [(1H-pyrazol-5-yl)carbamothioyl]carbamate.
Ethyl [(1H-pyrazol-5-yl)carbamothioyl]carbamate (124 g, 580 mmol) was stirred in sodium hydroxide (550 mL, 2.0 M, 1.1 mol) for 3 h at rt. The mixture was cooled to 0° C. and sulfuric acid (580 mL, 2.0 M, 1.2 mol) was added dropwise. The suspension was filtered, washed with water and the solid was dried under reduced pressure at 50° C. to give 85.2 g (87% yield) of 2-sulfanylpyrazolo[1,5-a][1,3,5]triazin-4-ol.
2-sulfanylpyrazolo[1,5-a][1,3,5]triazin-4-ol (85.2 g, 507 mmol) was dissolved in ethanol (2.0 I) and sodium hydroxide (580 mL, 1.7 M, 1.0 mol). Iodomethane (32 mL, 510 mmol; CAS 74-88-4) was added dropwise at rt and the mixture was stirred for 2 h at rt. The mixture was cooled to 0° C., sulfuric acid (510 mL, 1.0 M, 510 mmol) was added dropwise and the mixture was stirred for 1 h at rt. The precipitate was collected by filtration, washed with water dried under reduced pressure at 50° C. The solid was stirred 2 times in acetonitrile, liquid phases were filtered off and the solid was washed with hexane and dried to give 60.5 g (65% yield) of 2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazin-4-ol.
2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazin-4-ol (59.0 g, 324 mmol) was dissolved in DMF (690 mL), cooled to 0° C., NBS (63.4 g, 356 mmol; CAS 128-08-5) dissolved in DMF (200 mL) was added dropwise and the mixture was stirred for 1 h at 0° C. The mixture was poured into water, stirred for 15 min, filtered and washed with water, acetonitrile and hexane. The solid was dried under reduced pressure at 50° C. to give 71.7 g (85% yield) of 8-bromo-2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazin-4-ol.
8-bromo-2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazin-4-ol (33.3 g, 128 mmol) was dissolved in phosphorus oxychloride (170 mL, 1.8 mol; CAS 10025-87-3) and N,N-dimethylaniline (16 mL, 130 mmol; CAS 121-69-7) was added. The mixture was stirred for 3 h at 105° C. The mixture was poured carefully into ice water and neutralized with sodium bicarbonate. The suspension was filtered and washed with water and hexane to give 24.0 g (67% yield) of 8-bromo-4-chloro-2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazine.
8-bromo-4-chloro-2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazine (977 mg, 3.49 mmol) and 1-(1H-benzimidazol-2-yl)methanamine dihydrochloride (1.15 g, 5.24 mmol, CAS 5993-91-9) were dissolved in acetonitrile (11 mL), N,N-diisopropylethylamine (2.9 mL, 17 mmol) was added and the mixture was stirred overnight at 50° C. The mixture was evaporated, diluted with a mixture of dichloromethane and 2-propanol (4:1), washed with sodium hydroxide (2 M) and brine. The organic layer was filtered. The solid was dried under reduced pressure to give 192 mg (95% purity, 13% yield) of N-[(1H-benzimidazol-2-yl)methyl]-8-bromo-2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazin-4-amine.
N-[(1H-benzimidazol-2-yl)methyl]-8-bromo-2-(methylsulfanyl)pyrazolo[1,5-a][1,3,5]triazin-4-amine (650 mg, 1.67 mmol) was dissolved in dichloromethane (13 mL), cooled to 0° C., mCPBA (1.23 g, 70% purity, 5.00 mmol) was added and the mixture was stirred for 2 h at rt. The mixture was diluted with dichloromethane and washed with sat. sodium bicarbonate solution. The aqueous layer was extracted 2 times with a mixture of dichloromethane and 2-propanol and the combined organic layers were washed with water, dried and concentrated under reduced pressure to give 780 mg N-[(1H-benzimidazol-2-yl)methyl]-8-bromo-2-(methanesulfonyl)pyrazolo[1,5-a][1,3,5]triazin-4-amine.
N-[(1H-benzimidazol-2-yl)methyl]-8-bromo-2-(methanesulfonyl)pyrazolo[1,5-a][1,3,5]triazin-4-amine (143 mg, 339 μmol) and morpholine (89 μL, 1.0 mmol; CAS 110-91-8) were dissolved in acetonitrile (3.2 mL), N,N-diisopropylethylamine (180 μL, 1.0 mmol) was added and the mixture was stirred overnight at 70° C. The mixture was purified by preparative HPLC (HT basic) to give 91.0 mg (62% yield) of the title compound.
LC-MS (Method 2): Rt=1.01 min; MS (ESIneg): m/z=427 [M−H]−
1H-NMR (400 MHz, DMSO-d6) δ[ppm]: 2.336 (0.65), 2.518 (8.31), 2.522 (5.70), 2.539 (6.28), 2.678 (0.65), 3.305 (0.44), 3.490 (2.94), 3.620 (4.46), 4.867 (3.30), 4.876 (3.27), 7.100 (0.47), 7.114 (1.92), 7.118 (1.49), 7.124 (2.32), 7.131 (2.54), 7.136 (2.58), 7.143 (1.56), 7.147 (2.10), 7.162 (0.51), 7.393 (1.56), 7.410 (1.38), 7.527 (1.45), 7.544 (1.38), 8.037 (16.00), 9.138 (1.12), 12.253 (1.92).
Examples were tested in selected biological assays one or more times. When tested more than once, data are reported as either average values or as median values, wherein
Examples were synthesized one or more times. When synthesized more than once, data from biological assays represent average values or median values calculated utilizing data sets obtained from testing of one or more synthetic batch.
An empty field in any of the following tables means that the respective compound has not been tested in that Assay.
The cDNAs encoding the following protein sequences were codon optimized for expression in Sf9/Hi-5 insect cells and synthesized by the GeneArt Technology at Thermo Fischer Scientific.
The human CDK12 wt/DN (Acc. Q9NYV4), CDK13 (Q14004), CycK (075909) and the Saccharomyces cerevisiae CAK1 (P43568) full length sequence were used for cloning. These cDNAs also encoded att-site sequences at the 5′ and 3′ ends for subcloning into the following destination vectors using the Gateway Technology.
By using of baculovirus vectors with a strong polyhedrin promoter provides an N-terminal fusion of a His-tag with a Tobacco Edge virus cleavage site to the integrated gene of interest. Only the Saccharomyces cerevisiae CAK1 (P43568) full length sequence was cloned in an insect vector which provides a tag-free gene of interest.
The Hi-5 insect cells were cultivated in Insect Xpress Medium (Lonza #BE12-730Q) and for co-infection the following baculovirus with multiplicity of infection (MOI) was using for the expression of the complex: CDK12 and CDK13 with MOI 1.0; CycK and CAK1 with MOI 0.5.
The complex formation was performed by co-infection of Hi-5 cells grown in suspension to a density of 2×106 cells/mL in 8 L waver for 72 h. The cells were harvested by centrifugation (10 min., 170 g, 4° C.) and the cell pellets stored at −80° C.
Purification of the His-CDK12/His-CycK/CAK1 or His-CDK13/His-CycK/CAK1 complex was achieved by affinity chromatography using Ni-Sepharose High Performance (GE Healthcare #17-5268-02) or HisTrap™ HP (GE Healthcare #17-5247-01/05)
Cell pellets were resuspended in lysis buffer (50 millimol/L Hepes pH 7.5, 500 millimol/L NaCl, 40 millimol/L Imidazol, 10% Glycerol; 0.5% NP40, Benzonase (150 U/10 g cell pellet), 1 millimol/L DTT and 1× Complete EDTA-free protease inhibitor cocktail (Roche #1873580)).
The lysate was incubated on ice for 30 minutes and clarified by centrifugation (1 h, 4° C., 27500×g). Proteins were captured overnight at 4° C. using Ni-Sepharose or HisTrap HP material, washed with CDK12/13 wash buffer (50 millimol/L Hepes pH 7.5, 500 millimol/L NaCl, 40 millimol/L imidazole, 10% Glycerol, 1 millimol/L DTT) and eluted with wash buffer by using gradient of imidazole (40-500 millimol/L).
For removal of imidazole the eluted protein complexes were desalted with Zeba™ Desalt Spin Columns (Pierce #89893) against CDK12/13 DS buffer (50 millimol/L Hepes pH 7.5, 500 millimol/L NaCl, 10% Glycerol, 1 millimol/L DTT).
The final concentration was calculated densitrometrically using BSA as a standard in a Coomassie stained gel. Elution fractions were aliquoted and shock frozen using liquid nitrogen.
The in vitro activity of the compounds of the present invention can be demonstrated in the following assays:
CDK12/CycK-inhibitory activity of compounds of the present invention at 10 micromol/L adenosine-tri-phosphate (ATP) was quantified employing the TR-FRET (TR-FRET=Time Resolved Fluorescence Energy Transfer) based CDK12/CycK activity inhibition assay as described in the following paragraphs.
A complex of human recombinant CDK12 and human recombinant CycK (both N-terminally His-tagged, expression and purification as described above) was used as enzyme. As substrate for the kinase reaction biotinylated peptide biotin-Ahx-KFELLPTPPLSPSRRSGL (C-terminus in amid form) was used which can be purchased e.g. form the company Biosyntan (Berlin-Buch, Germany).
For the assay 50 nanoL of a 100 fold concentrated solution of the test compound in DMSO was pipetted into either a black low volume 384 well microtiter plate or a black 1536 well microtiter plate (both Greiner Bio-One, Frickenhausen, Germany), 2 microL of a solution of CDK12/CycK in aqueous assay buffer [25 millimol/L HEPES pH 7.5, 20 millimol/L MgCl2, 5 millimol/L ß-glycerophosphate, 2 millimol/L EGTA, 1.0 millimol/L dithiothreitol, 0.01% (v/v) Nonidet-P40 (Sigma), 0.01% (w/v) bovine serum albumin] were added and the mixture was incubated for 15 min at 22° C. to allow pre-binding of the test compounds to the enzyme before the start of the kinase reaction. Then the kinase reaction was started by the addition of 3 microL of a solution ATP (16.7 micromol/L=> final conc. in the 5 microL assay volume is 10 micromol/L) and substrate (1.67 micromol/L=> final conc. in the 5 microL assay volume is 1 micromol/L) in assay buffer and the resulting mixture was incubated for a reaction time of 60 min at 22° C. The concentration of CDK12/CycK was adjusted depending of the activity of the enzyme lot and was chosen appropriate to have the assay in the linear range, typical concentrations were about 2 nanomol/L. The reaction was stopped by the addition of 3 microL of a solution of TR-FRET detection reagents (125 nanomol/L streptavidine-XL665 [Cisbio Bioassays, Codolet, France] and 0.67 nanomol/L anti-Phospho-c-Myc (Ser 62) (E1J4K)-antibody from Cell Signalling [#13748] and 2 nanomol/L LANCE EU-W1024 labeled anti-rabbit IgG antibody [Perkin-Elmer, product no. 0083]) in an aqueous EDTA-solution (133 millimol/L EDTA, 0.27% (w/v) bovine serum albumin in 66.7 millimol/L HEPES pH 7.5).
The resulting mixture was incubated 1 h at 22° C. to allow the formation of complex between the phosphorylated biotinylated peptide and the detection reagents. Subsequently the amount of phosphorylated substrate was evaluated by measurement of the resonance energy transfer from the Eu-chelate to the streptavidine-XL. Therefore, the fluorescence emissions at 620 nm and 665 nm after excitation at 350 nm was measured in a TR-FRET reader, e.g. a Pherastar FS (BMG Labtechnologies, Offenburg, Germany) or a Viewlux (Perkin-Elmer). The ratio of the emissions at 665 nm and at 622 nm was taken as the measure for the amount of phosphorylated substrate. The data were normalised (enzyme reaction without inhibitor=0% inhibition, all other assay components but no enzyme=100% inhibition). Usually the test compounds were tested on the same microtiterplate in 11 different concentrations in the range of 20 micromol/L to 0.07 nanomol/L (20 micromol/L, 5.7 micromol/L, 1.6 micromol/L, 0.47 micromol/L, 0.13 micromol/L, 38 nanomol/L, 11 nanomol/L, 3.1 nanomol/L, 0.9 nanomol/L, 0.25 nanomol/L and 0.07 nanomol/L, the dilution series prepared separately before the assay on the level of the 100 fold concentrated solutions in DMSO by serial dilutions, exact concentrations may vary depending pipettors used) in duplicate values for each concentration and IC50 values were calculated using Genedata Screener™ software.
In the context of the present invention, the term “IC50 CDK12 hATP” refers to the IC50 values obtained according to the assay described in this section (2.2) herein below, i.e. the IC50 values for the inhibition of CDK12 at high ATP.
CDK12/CycK-inhibitory activity of compounds of the present invention at 2 millimol/L adenosine-tri-phosphate (ATP) was quantified employing the TR-FRET (TR-FRET=Time Resolved Fluorescence Energy Transfer) based CDK12/CycK activity inhibition assay as described in the following paragraphs.
A complex of human recombinant CDK12 and human recombinant CycK (both N-terminally His-tagged, expression and purification as described above) was used as enzyme. As substrate for the kinase reaction biotinylated peptide biotin-Ahx-KFELLPTPPLSPSRRSGL (C-terminus in amid form) was used which can be purchased e.g. form the company Biosyntan (Berlin-Buch, Germany).
For the assay 50 nanoL of a 100 fold concentrated solution of the test compound in DMSO was pipetted into either a black low volume 384 well microtiter plate or a black 1536 well microtiter plate (both Greiner Bio-One, Frickenhausen, Germany), 2 microL of a solution of CDK12/CycK in aqueous assay buffer [25 millimol/L HEPES pH 7.5, 20 millimol/L MgCl2, 5 millimol/L ß-glycerophosphate, 2 millimol/L EGTA, 1.0 millimol/L dithiothreitol, 0.01% (v/v) Nonidet-P40 (Sigma), 0.01% (w/v) bovine serum albumin] were added and the mixture was incubated for 15 min at 22° C. to allow pre-binding of the test compounds to the enzyme before the start of the kinase reaction. Then the kinase reaction was started by the addition of 3 microL of a solution ATP (3.33 millimol/L=> final conc. in the 5 microL assay volume is 2 millimol/L) and substrate (1.67 micromol/L=> final conc. in the 5 microL assay volume is 1 micromol/L) in assay buffer and the resulting mixture was incubated for a reaction time of 60 min at 22° C. The concentration of CDK12/CycK was adjusted depending of the activity of the enzyme lot and was chosen appropriate to have the assay in the linear range, typical concentrations were about 0.75 nanomol/L. The reaction was stopped by the addition of 3 microL of a solution of TR-FRET detection reagents (125 nanomol/L streptavidine-XL665 [Cisbio Bioassays, Codolet, France] and 0.67 nanomol/L anti-Phospho-c-Myc (Ser 62) (E1J4K)-antibody from Cell Signalling [#13748] and 2 nanomol/L LANCE EU-W1024 labeled anti-rabbit IgG antibody [Perkin-Elmer, product no. 0083]) in an aqueous EDTA-solution (133 millimol/L EDTA, 0.27% (w/v) bovine serum albumin in 66.7 millimol/L HEPES pH 7.5).
The resulting mixture was incubated 1 h at 22° C. to allow the formation of complex between the phosphorylated biotinylated peptide and the detection reagents. Subsequently the amount of phosphorylated substrate was evaluated by measurement of the resonance energy transfer from the Eu-chelate to the streptavidine-XL. Therefore, the fluorescence emissions at 620 nm and 665 nm after excitation at 350 nm was measured in a TR-FRET reader, e.g. a Pherastar FS (BMG Labtechnologies, Offenburg, Germany) or a Viewlux (Perkin-Elmer). The ratio of the emissions at 665 nm and at 622 nm was taken as the measure for the amount of phosphorylated substrate. The data were normalised (enzyme reaction without inhibitor=0% inhibition, all other assay components but no enzyme=100% inhibition). Usually the test compounds were tested on the same microtiterplate in 11 different concentrations in the range of 20 micromol/L to 0.07 nanomol/L (20 micromol/L, 5.7 micromol/L, 1.6 micromol/L, 0.47 micromol/L, 0.13 micromol/L, 38 nanomol/L, 11 nanomol/L, 3.1 nanomol/L, 0.9 nanomol/L, 0.25 nanomol/L and 0.07 nanomol/L, the dilution series prepared separately before the assay on the level of the 100 fold concentrated solutions in DMSO by serial dilutions, exact concentrations may vary depending pipettors used) in duplicate values for each concentration and IC50 values were calculated using Genedata Screener™ software.
CDK13/CycK-inhibitory activity of compounds of the present invention at 10 micromol/L adenosine-tri-phosphate (ATP) was quantified employing the TR-FRET (TR-FRET=Time Resolved Fluorescence Energy Transfer) based CDK13/CycK activity inhibition assay as described in the following paragraphs.
A complex of human recombinant CDK13 and human recombinant CycK (both N-terminally His-tagged, expression and purification as described above) was used as enzyme. As substrate for the kinase reaction biotinylated peptide biotin-Ahx-KFELLPTPPLSPSRRSGL (C-terminus in amid form) was used which can be purchased e.g. form the company Biosyntan (Berlin-Buch, Germany).
For the assay 50 nanoL of a 100 fold concentrated solution of the test compound in DMSO was pipetted into either a black low volume 384 well microtiter plate or a black 1536 well microtiter plate (both Greiner Bio-One, Frickenhausen, Germany), 2 microL of a solution of CDK13/CycK in aqueous assay buffer [25 millimol/L HEPES pH 7.5, 20 millimol/L MgCl2, 5 millimol/L ß-glycerophosphate, 2 millimol/L EGTA, 1.0 millimol/L dithiothreitol, 0.01% (v/v) Nonidet-P40 (Sigma), 0.01% (w/v) bovine serum albumin] were added and the mixture was incubated for 15 min at 22° C. to allow pre-binding of the test compounds to the enzyme before the start of the kinase reaction. Then the kinase reaction was started by the addition of 3 microL of a solution ATP (16.7 micromol/L=> final conc. in the 5 microL assay volume is 10 micromol/L) and substrate (1.67 micromol/L=> final conc. in the 5 microL assay volume is 1 micromol/L) in assay buffer and the resulting mixture was incubated for a reaction time of 60 min at 22° C. The concentration of CDK13/CycK was adjusted depending of the activity of the enzyme lot and was chosen appropriate to have the assay in the linear range, typical concentrations were about 5 nanomol/L. The reaction was stopped by the addition of 3 microL of a solution of TR-FRET detection reagents (125 nanomol/L streptavidine-XL665 [Cisbio Bioassays, Codolet, France] and 0.67 nanomol/L anti-Phospho-c-Myc (Ser 62) (E1J4K)-antibody from Cell Signalling [#13748] and 2 nanomol/L LANCE EU-W1024 labeled anti-rabbit IgG antibody [Perkin-Elmer, product no. 0083]) in an aqueous EDTA-solution (133 millimol/L EDTA, 0.27% (w/v) bovine serum albumin in 66.7 millimol/L HEPES pH 7.5).
The resulting mixture was incubated 1 h at 22° C. to allow the formation of complex between the phosphorylated biotinylated peptide and the detection reagents. Subsequently the amount of phosphorylated substrate was evaluated by measurement of the resonance energy transfer from the Eu-chelate to the streptavidine-XL. Therefore, the fluorescence emissions at 620 nm and 665 nm after excitation at 350 nm was measured in a TR-FRET reader, e.g. a Pherastar FS (BMG Labtechnologies, Offenburg, Germany) or a Viewlux (Perkin-Elmer). The ratio of the emissions at 665 nm and at 622 nm was taken as the measure for the amount of phosphorylated substrate. The data were normalised (enzyme reaction without inhibitor=0% inhibition, all other assay components but no enzyme=100% inhibition). Usually the test compounds were tested on the same microtiterplate in 11 different concentrations in the range of 20 micromol/L to 0.07 nanomol/L (20 micromol/L, 5.7 micromol/L, 1.6 micromol/L, 0.47 micromol/L, 0.13 micromol/L, 38 nanomol/L, 11 nanomol/L, 3.1 nanomol/L, 0.9 nanomol/L, 0.25 nanomol/L and 0.07 nanomol/L, the dilution series prepared separately before the assay on the level of the 100 fold concentrated solutions in DMSO by serial dilutions, exact concentrations may vary depending pipettors used) in duplicate values for each concentration and IC50 values were calculated using Genedata Screener™ software.
CDK2/CycE-inhibitory activity of compounds of the present invention was quantified employing the CDK2/CycE TR-FRET assay as described in the following paragraphs.
Recombinant fusion proteins of GST and human CDK2 and of GST and human CycE, expressed in insect cells (Sf9) and purified by Glutathion-Sepharose affinity chromatography, were purchase from ProQinase GmbH (Freiburg, Germany). As substrate for the kinase reaction biotinylated peptide biotin-Ttds-YISPLKSPYKISEG (C-terminus in amid form) was used which can be purchased e.g. form the company JERINI peptide technologies (Berlin, Germany).
For the assay 50 nanoL of a 100 fold concentrated solution of the test compound in DMSO was pipetted into a black low volume 384 well microtiter plate or a black 1536 well microtiter plate (both Greiner Bio-One, Frickenhausen, Germany), 2 microL of a solution of CDK2/CycE in aqueous assay buffer [50 millimol/L Tris/HCl pH 8.0, 10 millimol/L MgCl2, 1.0 millimol/L dithiothreitol, 0.1 millimol/L sodium ortho-vanadate, 0.01% (v/v) Nonidet-P40 (Sigma)] were added and the mixture was incubated for 15 min at 22° C. to allow pre-binding of the test compounds to the enzyme before the start of the kinase reaction. Then the kinase reaction was started by the addition of 3 microL of a solution of adenosine-tri-phosphate (ATP, 3.33 millimol/L=> final conc. in the 5 microL assay volume is 2 millimol/L) and substrate (1.25 micromol/L=> final conc. in the 5 microL assay volume is 0.75 micromol/L) in assay buffer and the resulting mixture was incubated for a reaction time of 25 min at 22° C. The concentration of CDK2/CycE was adjusted depending of the activity of the enzyme lot and was chosen appropriate to have the assay in the linear range, typical concentrations were in the range of 10 ng/ml. The reaction was stopped by the addition of 3 microL of a solution of TR-FRET detection reagents (0.333 micromol/L streptavidine-XL665 [Cisbio Bioassays, Codolet, France] and 1.67 nanomol/L anti-RB(pSer807/pSer8l 1)-antibody from BD Pharmingen [#558389] and 2 nanomol/L LANCE EU-W1024 labeled anti-mouse IgG antibody [Perkin-Elmer, product no. AD0077, as an alternative a Terbium-cryptate-labeled anti-mouse IgG antibody from Cisbio Bioassays can be used]) in an aqueous EDTA-solution (167 millimol/L EDTA, 0.2% (w/v) bovine serum albumin in 100 millimol/L HEPES pH 7.5).
The resulting mixture was incubated 1 h at 22° C. to allow the formation of complex between the phosphorylated biotinylated peptide and the detection reagents. Subsequently the amount of phosphorylated substrate was evaluated by measurement of the resonance energy transfer from the Eu-chelate to the streptavidine-XL. Therefore, the fluorescence emissions at 620 nm and 665 nm after excitation at 350 nm was measured in a TR-FRET reader, e.g. a Pherastar (BMG Labtechnologies, Offenburg, Germany) or a Viewlux (Perkin-Elmer). The ratio of the emissions at 665 nm and at 622 nm was taken as the measure for the amount of phosphorylated substrate. The data were normalised (enzyme reaction without inhibitor=0% inhibition, all other assay components but no enzyme=100% inhibition). Usually the test compounds were tested on the same microtiterplate in 11 different concentrations in the range of 20 micromol/L to 0.07 nanomol/L (20 micromol/L, 5.7 micromol/L, 1.6 micromol/L, 0.47 micromol/L, 0.13 micromol/L, 38 nanomol/L, 11 nanomol/L, 3.1 nanomol/L, 0.9 nanomol/L, 0.25 nanomol/L and 0.07 nanomol/L, the dilution series prepared separately before the assay on the level of the 100 fold concentrated solutions in DMSO by serial dilutions, exact concentrations may vary depending pipettors used) in duplicate values for each concentration and IC50 values were calculated using Genedata Screener™ software.
CDK9/CycT1-inhibitory activity of compounds of the present invention at a high ATP concentration after preincubation of enzyme and test compounds was quantified employing the CDK9/CycT1 TR-FRET assay as described in the following paragraphs.
Recombinant full-length His-tagged human CDK9 and CycT1, expressed in insect cells and purified by Ni-NTA affinity chromatography, were purchased from Life Technologies (Cat. No PV4131). As substrate for the kinase reaction biotinylated peptide biotin-Ttds-YISPLKSPYKISEG (C-terminus in amide form) was used which can be purchased e.g. form the company JERINI peptide technologies (Berlin, Germany).
For the assay 50 nanoL of a 100 fold concentrated solution of the test compound in DMSO was pipetted into either a black low volume 384 well microtiter plate or a black 1536 well microtiter plate (both Greiner Bio-One, Frickenhausen, Germany), 2 microL of a solution of CDK9/CycT1 in aqueous assay buffer [50 millimol/L Tris/HCl pH 8.0, 10 millimol/L MgCl2, 1.0 millimol/L dithiothreitol, 0.1 millimol/L sodium ortho-vanadate, 0.01% (v/v) Nonidet-P40 (Sigma)] were added and the mixture was incubated for 15 min at 22° C. to allow pre-binding of the test compounds to the enzyme before the start of the kinase reaction. Then the kinase reaction was started by the addition of 3 microL of a solution of adenosine-tri-phosphate (ATP, 3.3 millimol/L=> final conc. in the 5 microL assay volume is 2 millimol/L) and substrate (1.25 micromol/L=> final conc. in the 5 microL assay volume is 0.75 micromol/L) in assay buffer and the resulting mixture was incubated for a reaction time of 25 min at 22° C. The concentration of CDK9/CycT1 was adjusted depending of the activity of the enzyme lot and was chosen appropriate to have the assay in the linear range, typical concentrations were in the range of 0.5 microg/ml. The reaction was stopped by the addition of 3 microL of a solution of TR-FRET detection reagents (0.33 micromol/L streptavidine-XL665 [Cisbio Bioassays, Codolet, France] and 1.67 nanomol/L anti-RB(pSer807/pSer8l 1)-antibody from BD Pharmingen [#558389] and 2 nanomol/L LANCE EU-W1024 labeled anti-mouse IgG antibody [Perkin-Elmer, product no. AD0077]) in an aqueous EDTA-solution (167 millimol/L EDTA, 0.2% (w/v) bovine serum albumin in 100 millimol/L HEPES pH 7.5).
The resulting mixture was incubated 1 h at 22° C. to allow the formation of complex between the phosphorylated biotinylated peptide and the detection reagents. Subsequently the amount of phosphorylated substrate was evaluated by measurement of the resonance energy transfer from the Eu-chelate to the streptavidine-XL. Therefore, the fluorescence emissions at 620 nm and 665 nm after excitation at 350 nm was measured in a TR-FRET reader, e.g. a Pherastar (BMG Labtechnologies, Offenburg, Germany) or a Viewlux (Perkin-Elmer). The ratio of the emissions at 665 nm and at 622 nm was taken as the measure for the amount of phosphorylated substrate. The data were normalised (enzyme reaction without inhibitor=0% inhibition, all other assay components but no enzyme=100% inhibition). Usually the test compounds were tested on the same microtiterplate in 11 different concentrations in the range of 20 micromol/L to 0.07 nanomol/L (20 micromol/L, 5.7 micromol/L, 1.6 micromol/L, 0.47 micromol/L, 0.13 micromol/L, 38 nanomol/L, 11 nanomol/L, 3.1 nanomol/L, 0.9 nanomol/L, 0.25 nanomol/L and 0.07 nanomol/L, the dilution series prepared separately before the assay on the level of the 100 fold concentrated solutions in DMSO by serial dilutions, exact concentrations may vary depending pipettors used) in duplicate values for each concentration and IC50-values were calculated using Genedata Screener™ software.
Tissue cultured human MDA-MB-231 human breast cancer cells were plated in 500 microL per well at 200,000 cells/well in a 24 well microtiter plate. After 24 h, the cells were exposed continuously for 24 h to test substances (substances were added with Tecan HP D300 Dispenser). RNA was prepared using Qiagen RNeasy MiniKit (#74106), RNA was quantified using a NanoDrop Equipment, and 600 nano gamms of RNA was converted to cDNA using a SuperScript VILO kit (Thermofisher #11755050) followed by qPCR amplification. BRCA1 and ATR gene expression was measured by RT-qPCR and normalised to GAPDH housekeeping gene expression. qPCR primer sets have been purchased from Thermo Fisher Scientific/Applied Biosystems: BRCA1, #Hs 01556193; ATR, #Hs 00992123; GAPDH, #Hs 03929097.
Human tumour cells were originally obtained from the American Type Culture Collection (ATCC), or from the Deutsche Sammlung von Mikroorganismen und Zellkulturen (DSMZ, German Collection of Microorganisms and Cell Cultures). Cultivated tumour cells (CAL-120, human breast adenocarcinoma cells, DSMZ ACC-459; MDA-MB-231, human breast cancer cells, ATCC HTB-26) were plated at a density of 4,000 cells/well in a 96-well multititer plate in 200 microL of their respective growth medium supplemented 10% fetal calf serum. After 24 hours, the cells of one plate (zero-point plate) were stained with crystal violet (see below), while the medium of the other plates was supplemented with the test substances in various concentrations (0 micromol/L, as well as in the range of 0.01-10 micromol/L; the final concentration of the solvent dimethyl sulfoxide was adjusted to 0.1%) using a Tecan HP D300 Digital Dispenser. The cells were incubated for 4 days in the presence of test substances. Cell proliferation was determined by staining the cells with crystal violet: the cells were fixed by adding 20 microL/measuring point of an 11% glutaric aldehyde solution for 15 minutes at room temperature. After three washing cycles of the fixed cells with water, the plates were dried at room temperature. The cells were stained by adding 100 microL/measuring point of a 0.1% crystal violet solution (pH 3.0). After three washing cycles of the stained cells with water, the plates were dried at room temperature. The dye was dissolved by adding 100 microL/measuring point of a 10% acetic acid solution. The extinction was determined by photometry at a wavelength of 595 nm. The change of cell number, in percent, was calculated by normalization of the measured values to the extinction values of the zero-point plate (=0%) and the extinction of the untreated (0 μM) cells (=100%). The IC50 values (inhibitory concentration at 50% of maximal effect) were determined by means of a 4 parameter fit.
CAL-120 human breast cancer cells (DSMZ ACC 459) were seeded at 300,000 cells/well in 6-well plates containing 2 mL of growth medium (DMEM, 10% FCS, glutamine) and incubated for 24 h at 37° C. in an humidified incubator. Test compounds were added at various concentrations, control wells received solvent (DMSO), and the plates were incubated for another 18 h at 37° C. Cells were washed 2 times with PBS and lysed in 75 microL lysis buffer (MSD-Puffer (MSD, #R60TX-2), +1% SDS+PhosSTOP (Roche #04906837001)+ complete mini (Roche #04693159001)) by scraping. The lysates were pushed 2 times through Qiashedders followed by centrifugation at 14,000 rpm for 30-50 sec. The supernatant was stored at −20° C. Proteins were separated by applying 0.4 micrograms of protein lysate to Protein Simple 66-440 kDa (Protein Simple #SM-S002) size assay columns on a PEGGY SUE or SALLY SUE equipment according to the supplier's manual. CDK12 and HSP90 (loading control) were detected using anti-human CDK12 antibody (Cell Signaling Technologies (CST) #11793) at 1:25 dilution and anti-human HSP90 antibody (CST #4877) at 1:5,000 dilution. CDK12 and HSP90 peak areas were determined using Protein Simple Compass software. Ratio of CDK12/HSP90 peak areas were calculated for each sample, and DC50 values (degrading concentration to achieve 50% reduction relative to vehicle treated control) were determined by means of a 4 parameter fit.
Westernblot analyses were performed according to standard protocols. 40 micrograms of protein lysates per lane were subjected to polyacrylamide gel electrophoresis using NuPAGE 3-8% tris acetate gels (ThermoFisher) for detection of CDK12 and CDK13 or using NuPAGE 4-12% bis-tris gels (ThermoFisher) for detection of CDK9 followed by protein transfer to nitrocellulose membranes using a BioRad Transblot Turbo equipment. Membranes were probed with rabbit anti CDK12 antibodies (CST #11793), rabbit anti-CDK13 antibodies (Novus #NB 100-68268), anti-CDK9 antibodies (CST #2316), and anti HSP90 (Becton Dickinson #610419) or anti-GAPDH (Zytomed #RGM2-6C5) antibodies for loading control.
In the context of the present invention, the term “DC50 CDK12” refers to the DC50 values obtained according to the assay described in this section (6) herein below, i.e. the DC50 values for the degradation of CDK12.
CAL-120 human breast cancer cells (DSMZ ACC 459) are seeded in 1536-well microtiter plates (800 cells per well) containing 50 nanoL of compounds in Dose-Response. Control wells received DMSO or Reference Example 1. Plates are then incubated for 24 h at 37° C. in an humidified incubator and fixed with 4% PFA for 10 min. Then immunofluorescence (IF) against CDK12 (CellSignalling CDK12 Antibody #11973, rabbit, 1:100 dilution) is performed using standard IF protocols. Cells are then stained with Hoechst 33342 (Life Technologies, H-1399, 0.1 microg/ml) and imaged on an automated confocal microscopy system (e.g. Perkin Elmer Opera Phenix). Nuclear and cytoplasmic intensity as well as the nuclear/cytoplasmic intensity ratio is determined by automated image analysis using custom generated scripts (MetaXpress). Data is then transferred to Genedata Screener software, normalized to DMSO and control and DC50 values (degrading concentration to achieve 50% reduction of nuclear CDK12 staining intensity relative to controls) are reported.
In the context of the present invention, the term “DC50 Cyclin K” refers to the DC50 values obtained according to the assay described in this section (7) herein below, i.e. the DC50 values for the degradation of Cyclin K.
CAL-120 human breast cancer cells (DSMZ ACC 459) are seeded in 1536-well microtiter plates (800 cells per well) containing 50 nanoL of compounds in Dose-Response. Control wells received DMSO or Reference Example 1. Plates are then incubated for 24 h at 37° C. in an humidified incubator and fixed with 4% PFA for 10 min. Then immunofluorescence (IF) against CYCLIN K (ThermoFisher Scientific CCNK Antibody #PA5-85020, rabbit, 1:200 dilution) is performed using standard IF protocols. Cells are then stained with Hoechst 33342 (Life Technologies, H-1399, 0.1 microg/ml) and imaged on an automated confocal microscopy system (e.g. Perkin Elmer Opera Phenix). Nuclear and cytoplasmic intensity as well as the nuclear/cytoplasmic intensity ratio is determined by automated image analysis using custom generated scripts (MetaXpress). Data is then transferred to Genedata Screener software, normalized to DMSO and control and DC50 values (degrading concentration to achieve 50% reduction of nuclear CCNK staining intensity relative to controls) are reported.
The anti-tumor activity of test compound was examined in murine xenotransplantation models of human cancer. For this purpose, mice were implanted subcutaneously or orthotopically with specific human tumor cells. At a mean tumor size of 20-30 mm2 animals were randomized into treatment and control groups (n=10 animals/group) and treatment started with vehicle only or Compound (formulation: 80% PEG400/20% Water; application route: p.o./per os, orally; dose/schedule: 5 mg/kg daily (QD), 5 mg/kg twice daily (2QD) for 2 days on/5 days off). The oral application volume was 10 ml/kg. The time interval between two applications per day was 6-7 h. The experiment was ended when the untreated control group had tumors of area s 225 mm2. The tumor size and the body weight were determined three times weekly. Changes in the body weight were a measure of treatment-related toxicity (>10%=critical body weight loss and stop of treatment until recovery, >20%=toxic, termination). The tumor area was detected by means of an electronic caliper gauge [length (mm)×width (mm)]. In vivo anti-tumor efficacy is presented as T/C ratio (Treatment/Control) calculated with tumor areas at study end by the formula [(tumor area of treatment group at day x)−(tumor area of treatment group at day before first treatment)]/[(tumor area of control group at day x)−(tumor area of control group at day before first treatment)]. A compound having a T/C below 0.5 is defined as active (effective). Statistical analysis was assessed using SigmaStat software. A one-way analysis of variance was performed and differences to the control were compared by a pair-wise comparison procedure (Dunn's method).
Use of in vitro assays to evaluate the inhibition potential of new drug candidates towards CYP-mediated metabolism has been shown to be effective as part of a strategy to minimize the chances of drug interactions with co-administered drugs.
The inhibitory potency of the test compound towards 5 human cytochrome P450 isoforms (CYP1A2, 2C8, 2C9, 2D6, and 3A4) was determined during the lead optimization phase. In case of CYP3A4 also time dependent inhibitory potential was tested by applying a 30 min pre-incubation time of the test compound in metabolically active incubation system. Human liver microsomes (pooled, >30 male and female donors) were incubated with individual CYP isoform-selective standard probes (phenacetin, amodiaquine, diclofenac, dextromethorphan and midazolam) in the absence and presence of increasing concentrations of the test compound. Furthermore, the inhibitory potency of standard inhibitors was included as positive controls (fluvoxamine for CYP1A2, montelukast for CYP2C8, sulfaphenazole for CYP2C9, fluoxetine for CYP2D6, ketoconazole for CYP3A4 and mibefradil for CYP3A4-preincubation). Incubation conditions (protein and substrate concentration, incubation time) were optimized with regard to linearity and metabolite turnover. Incubation medium consists of 50 millimol/L potassium phosphate buffer (pH 7.4) containing 1 millimol/L EDTA, NADPH regenerating system (1 millimol/L NADP, 5 millimol/L glucose 6-phosphate, glucose 6-phosphate dehydrogenase (1.5 U/mL). Sequential dilutions and incubations were performed on a Freedom Evo Workstation (Tecan, Crailsheim, FRG) in 96-well plates at 37° C. A final incubation volume of 200 μL was used. Reactions were stopped by addition of 100 μL acetonitrile containing the respective internal standard. After centrifugation the supernatants were analyzed by LC-MS/MS. The LC-MS/MS system for quantification of paracetamol (CYP1A2), desethylamodiaquine (CYP2C8), 4′-hydroxydiclofenac (CYP2C9), dextrorphan (CYP2D6), and 1′-hydroxymidazolam (CYP3A4) comprised a QTRAP 6500@ LC-MS/MS system (Applied Biosystems, MDS Sciex, Ontario, Canada) equipped with an electrospray ionization (ESI) interface (Turboionspray® interface) used to generate positive [M+H]+ ions, an Agilent HP 1290 liquid chromatograph (Agilent Technologies, Waldbronn, Germany) and a HTS PAL autosampler (CTC Analytics, Zwingen, Switzerland).
Data analysis: The CYP-mediated activities in the presence of test compounds (inhibitors) were expressed as percentages of the corresponding no inhibitor control samples. A sigmoid-shaped curve was fitted to the data, and the enzyme inhibition parameter IC50 was calculated using a nonlinear least-squares regression analysis of the plot of percent control activity versus concentration of the test inhibitor.
Hepatocytes from Han Wistar rats were freshly isolated via a 2-step perfusion method. After perfusion, the liver was carefully removed from the rat: the liver capsule was opened and the hepatocytes were gently shaken out into a Petri dish with ice-cold Williams' medium E (WME). The resulting cell suspension was filtered through sterile gaze in 50 ml falcon tubes and centrifuged at 50×g for 3 min at room temperature. The cell pellet was resuspended in 30 ml WME and centrifuged through a Percoll® gradient for 2 times at 100×g. The hepatocytes were washed again with WME and resuspended in medium containing 5% FCS. Cell viability was determined by trypan blue exclusion.
For the metabolic stability assay liver cells were distributed in WME containing 5% FCS to glass vials at a density of 1.0×106 vital cells/ml. The test compound was added to a final concentration of 1 micromol/L. During incubation, the hepatocyte suspensions were continuously shaken at 580 rpm and aliquots were taken at 2, 8, 16, 30, 45 and 90 min, to which equal volumes of cold methanol were immediately added. Samples were frozen at −20° C. over night, after subsequently centrifuged for 15 minutes at 3000 rpm and the supernatant was analyzed with an Agilent 1200 HPLC-system with LCMS/MS detection.
The half-life of a test compound was determined from the concentration-time plot. From the half-life the intrinsic clearances were calculated. Together with the additional parameters liver blood flow, amount of liver cells in vivo and in vitro. The hepatic in vivo blood clearance (CLblood) and the maximal oral bioavailability (Fmax) was calculated using the following formulae: CL'intrinsic [ml/(min*kg)]=kel [1/min]/((cellno/volume of incubation [ml])*fu,inc)*(cellno/liver weight [g])*(specific liver weight [g liver/kg body weight]); CLblood well-stirred [L/(h*kg)]=(QH [L/(h*kg)]*fu,blood*CL'intrinsic [L/(h*kg)])/(QH [L/(h*kg)]+fu,blood*CL'intrinsic [L/(h*kg)]); Fmax=1-CLblood/QH and using the following parameter values: Liver blood flow (QH)—4.2 L/h/kg rat; specific liver weight—32 g/kg rat body weight; liver cells in vivo—1.1×108 cells/g liver, liver cells in vitro—1.0×106/ml; fu,inc and fu,blood is taken as 1.
DPX2 cells (hepatoma cell line stably-cotransfected with a vector for human PXR and a Luciferase reporter gene under the control of two human CYP3A4 promotors, Puracyp, Carlsbad, Calif.) were cultivated according to manufacturer's instructions with following modifications: Cells were seeded in a 384 well plate and cultivated at 37° C./5% CO2 in humidified air. 24 h prior read-out the cells were treated with compound in a ten point serial dilution of ˜1:3 starting at the highest test concentration of 49.8 micromol/L and ending at 2 nanomol/L. Rifampicin was incubated in the same manner as positive control. In addition, for the normalization of the luminescence signal cells were incubated with Rifampicin at a concentration of 16.7 micromol/L corresponding to 100% activation, as well as DMSO for background luminescence corresponding to 0% activation (n=32 wells each). Cells were lyzed and incubated with the Luciferase substrate ONE-Glo™ Reagent (Promega, Madison Wis., USA) according to manufacturer's instructions and luminescence signal was detected in a plate reader. A concentration-dependent increase of the luciferase activity above 10% of Rifampicin control was classified as PXR transactivation
For in vivo pharmacokinetic experiments test compounds were administered to male Wistar rats intravenously at doses of 0.3 to 1 mg/kg and intragastral at doses of 0.5 to 10 mg/kg formulated as solutions using solubilizers such as PEG400 in well-tolerated amounts.
For pharmacokinetics after intravenous administration test compounds were given as i.v. bolus and blood samples were taken at 2 min, 8 min, 15 min, 30 min, 45 min, 1 h, 2 h, 4 h, 6 h, 8 h and 24 h after dosing. Depending on the expected half-life additional samples were taken at later time points (e.g. 48 h, 72 h). For pharmacokinetics after intragastral administration test compounds were given intragastral to fasted rats and blood samples were taken at 5 min, 15 min, 30 min, 45 min, 1 h, 2 h, 4 h, 6 h, 8 h and 24 h after dosing. Depending on the expected half-life additional samples were taken at later time points (e.g. 48 h, 72 h). Blood was collected into Lithium-Heparintubes (Monovetten®, Sarstedt) and centrifuged for 15 min at 3000 rpm. An aliquot of 100 μL from the supernatant (plasma) was taken and precipitated by addition of 400 μL cold acetonitril and frozen at −20° C. over night. Samples were subsequently thawed and centrifuged at 3000 rpm, 4° C. for 20 minutes. Aliquots of the supernatants were taken for analytical testing using an Agilent 1200 HPLC-system with LCMS/MS detection. PK parameters were calculated by non-compartmental analysis using a PK calculation software.
PK parameters derived from concentration-time profiles after i.v.: CLplasma: Total plasma clearance of test compound (in L/kg/h); CLblood: Total blood clearance of test compound: CLplasma*Cp/Cb (in L/kg/h) with Cp/Cb being the ratio of concentrations in plasma and blood. PK parameters calculated from concentration time profiles after i.g.: Cmax: Maximal plasma concentration (in mg/L); Cmaxnorm: Cmax divided by the administered dose (in kg/L); Tmax: Time point at which Cmax was observed (in h). Parameters calculated from both, i.v. and i.g. concentration-time profiles: AUCnorm: Area under the concentration-time curve from t=0 h to infinity (extrapolated) divided by the administered dose (in kg*h/L); AUC(0-tlast)norm: Area under the concentration-time curve from t=0 h to the last time point for which plasma concentrations could be measured divided by the administered dose (in kg*h/L); t1/2: terminal half-life (in h); F: oral bioavailability: AUCnorm after intragastral administration divided by AUCnorm after intravenous administration (in %).
Number | Date | Country | Kind |
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20161681.0 | Mar 2020 | EP | regional |
Filing Document | Filing Date | Country | Kind |
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PCT/EP2021/055572 | 3/5/2021 | WO |