Patent Grant
11633467
This application is the U.S. National Stage of International Application PCT/EP2019/053699, filed Feb. 14, 2019, which designates the U.S. and was published by the International Bureau in English on Aug. 22, 2019, and which claims the benefit of European Patent Application No. 18 157 031.8, filed Feb. 15, 2018 and European Patent Application No. 18 215 676.0, filed Dec. 21, 2018; all of which are hereby incorporated herein in their entirety by reference.
The present invention relates to an immunogenic composition comprising one or more norovirus (NoV) antigen(s) and an adjuvant, in particular to a composition comprising one or more NoV antigen and cholera toxin B (CTB) and/or E. coli heat-labile enterotoxin B subunit (LTB) as adjuvant. The present invention also relates to an immunogenic composition comprising one or more norovirus (NoV) antigen(s) and one or more bacterial antigen(s) that is subunit B of a bacterial exotoxin. In addition, the present invention relates to an anti-NoV vaccine comprising the immunogenic composition and to methods of preventing, treating or reducing severity of a NoV infection or for conferring immunity to NoV infections in a human subject. Further, the present invention relates to an immunogenic composition, and an anti-NoV vaccine comprising the immunogenic composition, for use in a method of preventing, treating or reducing severity of gastroenteritis caused by a NoV infection in a subject.
Noroviruses are the leading cause of gastroenteritis outbreaks worldwide. They are responsible for 685 million cases annually including 200 million cases among children 5 years old or younger (www.cdc.gov/norovirus/worldwide.html). Up to date, there is no norovirus vaccine on the market. Also, there are no established protocols for norovirus cultivation, which significantly slows down progress of norovirus vaccine development. In addition, the rapid rate of the genetic changes of circulating noroviruses leads to new norovirus strains emerging every 2-4 years, causing epidemic outbreaks and complicating the development of vaccines and therapies that are required to counter these challenges (de Graaf, M, van Beek, J, & Koopmans, P G, 2016, Nature Rev Microbiol, 14: 421-433). It is evident that genogroup GI and GII representatives have been the main causes of the majority of outbreaks in the last two decades (Matthews et al., 2012, Epidemiol. Infect, 140: 1161-1172) with prevalence of the GII genogroup genotype 4 (GII.4). For example, since 2014, appearance of new GII.17 strains has been described in East Asia as well as re-emergence of old GII.4 strains (Chan et al, 2015, Nat Commun, doi: 10.1038/ncomms10061; Choi et al, 2017, Food Environ Virol, doi: 10.1007/s12560-017-9278-4). This constantly changing landscape adds complexity to defining an efficient vaccine composition, as the most preferred approach is a multivalent vaccine. Current norovirus vaccine development relies on use of virus-like particles (VLPs) subunit vaccines (for most recent reviews please see: Tan, M. & Jiang, X., 2014, Hum. Vaccin Immunother, 10:1449-1456; Debbink, K., Lindesmith, L. & Baric, R. S., 2014, Clin Infect Dis, 58:1746-1752; Ramani, S., Estes, M. K. & Atmar, R. L., 2016, PLoS Pathog, 12:e1005334). There is significant progress in accumulating clinical data on norovirus VLP-based vaccine safety and immunogenicity (Ball et al, 1999, Gastroenterology, 117:40-48; Tacket et al, 2003, Clin Immunol, 108:241-247; Lindesmith et al, 2015, PLoS Med, 12:e1001807). The first VLP bivalent vaccine (GI.2+GII.4 VLPs or strains) has reached phase IIb clinical trials (Reference NCT02669121 in clinical trials database https://clinicaltrials.gov/ct2/show/NCT02669121) and several others are under development in pre-clinical research (Springer, M J, et al., 2016, Vaccine, 34:1452-1458; Ball, J. et al., 2017, PLOS One, 12: e0177310; for review see Cortes-Penfield, N W, et al., 2017, Clin. Ther., pii: S0149-2918(17)30769-5).
A recent publication of the results of a randomized, controlled, double-blind clinical trial in healthy adults demonstrated that some tested adjuvants (MPL, alum) do not have an effect on immunogenicity, do not prevent interference between different Norovirus genotypes in the mixture of different VLPs, but can be used (e.g. alum) to stabilize norovirus VLPs (Leroux-Roels, G (2018), The Journal of Infectious Diseases, 217(4), 597-607, doi: 10.1093/infdis/jix572. [Epub ahead of print]). In addition, it is known that alum induces good Th2 responses, but has little capacity to stimulate cellular Th1 immune responses. Also, alum as adjuvant can cause increased IgE production, allergenicity (Gupta et al., 1995, In: Powel M F, Newman M J (eds). Vaccine design: The subunit and adjuvant approach. NY, Plenum Press, 229-248; Goto, N, et al., 1993, Vaccine, 11:914-918; Bergfors E, et al., 2005, Eur J Pediatr., 164:691-697) and cytotoxicity. Despite the fact that alum-based vaccines are generally well-tolerated, alum has long-lasting biopersistence in the body, ability to migrate in lymphoid organs and accumulate in brain, which is raising concerns. For a review of alum as adjuvant and its side effects, see: Petrovsky, N & Aguilar, J C., 2004, Immunol. &Cell Biol., 82:488-496; Gherardi R K, et al., 2014, Front. Neurol, 6:4; Gherardi R K, et al, 2016, Morphologie, 100:85-94.
Use of VP1 antigens in the form of highly immunogenic VLPs opened opportunities for partially addressing the above problems. However, up to date, the progress with vaccine development is rather slow and more efforts are required to deal with the issue by offering new immunogenic compositions that can provide reliable protection from noroviral infection. Finding a suitable nontoxic adjuvant that can further improve VLP-containing vaccine performance and replace or, at least, reduce the amount of alum in vaccine formulations would help to address this task. It would be an advantage, if an adjuvant of proteinaceous nature, when used at higher doses, can also serve as antigen by triggering an immune response against itself and provide protection or lower severity of gastroenteritis caused by a pathogen other than norovirus, preferably a bacterial pathogen.
Another problem in the prior art is the following dilemma. For providing broad spectrum immunity against norovirus infections, vaccines containing antigen mixtures, such as an antigen from a genogroup I norovirus and an antigen from a genogroup II norovirus were considered. However, interference of the antigen response to one antigen due to the presence of a second antigen is frequently observed. As a consequence, it is difficult to achieve the broad spectrum immunity intended by combining two or more antigens. It would thus be desirable to achieve antigenic compositions and vaccines comprising two or more different antigens, wherein interference of immune response between the antigens is suppressed.
It is therefore an object of the invention to provide antigenic compositions, and vaccines containing them, that are antigenic against norovirus (NoV) antigens and, optionally, also against bacterial pathogens. It is also an object to provide antigenic compositions, and vaccines containing them, that can protect subjects from NoV infection or that can prevent and/or treat NoV infections, or that reduce the severity of a NoV infection. It is also an object to provide antigenic compositions, and vaccines containing them, that can protect subjects from NoV infection by genogroup I and genogroup II NoV or that can prevent and/or treat NoV infections by genogroup I and genogroup II NoV, or that reduce the severity of a NoV infection by genogroup I and genogroup II NoV. It is a further object to provide antigenic compositions, and vaccines containing them, that provide balanced humoral and cellular immune response. It is a further object to provide antigenic compositions, and vaccines containing them, that are sufficiently immunogenic even if they contain a low content of alum as adjuvant or no alum at all, and/or that suppress interference of multiple antigens contained in the composition or vaccine. It is a further object to provide an immunogenic composition and vaccine for increasing the Th1 immune response in a subject against the antigen(s) in the composition or vaccine.
Accordingly, the present invention provides the following:
(1) An immunogenic composition comprising at least one norovirus antigen and an adjuvant.
(2) The immunogenic composition according to items (1), wherein said at least one norovirus antigen is or comprises a norovirus VP1 protein.
(3) The immunogenic composition according to any one of items (1) or (2), said immunogenic composition comprising an antigen of a genogroup I norovirus and an antigen of a genogroup II norovirus.
(4) The immunogenic composition according to any one of items (1) to (3), wherein said immunogenic composition comprises norovirus virus-like particles (norovirus VLPs) comprising or consisting of said at least one norovirus antigen.
(5) The immunogenic composition according to any one of items (1) to (4), wherein said immunogenic composition comprises VLPs of a genogroup I norovirus and VLPs of a genogroup II norovirus.
(6) The immunogenic composition according to any one of items (1) to (5), wherein said immunogenic composition comprises VLPs comprising, preferably consisting of, a norovirus genogroup I antigen and VLPs comprising, preferably consisting of, a norovirus genogroup II antigen.
(7) The immunogenic composition according to any one of items (1) to (6), wherein said adjuvant is cholera toxin B (CTB).
(8) The immunogenic composition according to item (7), wherein said composition contains said at least one norovirus antigen and said CTB in a mass ratio range of from 1:0.1 to 1:5, preferably from 1:0.2 to 1:3, more preferably of from 1:0.5 to 1:2.
(9) The immunogenic composition according to any one of items (7) and (8), wherein said CTB is pentameric CTB.
(10) The immunogenic composition according to any one of items (1) to (9), wherein said immunogenic composition comprises a further adjuvant.
(11) The immunogenic composition according to item (10), wherein said further adjuvant is alum.
(12) The immunogenic composition according to any one of items (1) to (10), wherein said composition does not contain added aluminum salt such as alum.
(13) The immunogenic composition according to item (10) or (11), wherein said CTB and said further adjuvant are present in a mass ratio range of from 1:200 to 10:1, preferably of from 1:100 to 5:1, more preferably of from 1:30 to 1:1.
(14) The immunogenic composition according to any one of items (1) to (13), comprising Norovirus VLPs as antigen and CTB as an adjuvant.
(15) The immunogenic composition according to any one of items (1) to (14), comprising VLPs comprising or consisting of a genogroup I noroviral antigen, VLPs comprising or consisting of a genogroup 11 noroviral antigen, and CTB as an adjuvant.
(16) The immunogenic composition according to any one of items (1) to (15), comprising VLPs comprising or consisting of a genotype I.1 or I.4 noroviral antigen, VLPs comprising or consisting of a genotype II.4 noroviral antigen, and CTB as an adjuvant.
(17) The immunogenic composition according to any one of item (15), comprising said genogroup I noroviral antigen and said genogroup II noroviral antigen in a mass ratio range of from 1:1 to 1:6, preferably of from 1:1.5 to 1:5, more preferably of from 1:2 to 1:4.
(18) The immunogenic composition according to item (16), comprising said genotype I.1 or I.4 noroviral antigen and said genotype II.4 noroviral antigen in a mass ratio range of from 1:1 to 1:6, preferably of from 1:1.5 to 1:5, more preferably of from 1:2 to 1:4.
(19) The immunogenic composition according to item (1), wherein said adjuvant is a B subunit of an AB5 toxin, such as the B subunit of cholera toxin (CTB) and/or the B subunit of E. coli heat-labile enterotoxin (LTB).
(20) The immunogenic composition according to item (19), wherein said B subunit of an AB5 toxin is a protein defined according to any one or more or all of items (A) to (I) below, and/or wherein said B subunit of an AB5 toxin is a protein as defined according to any one or more or all of items (A′) to (I′) below.
(21) The immunogenic composition according to any one or more of items (7) to (9), (13) to (16), (20), (22), (24), and (28), wherein said composition is free of the A subunit of said CTB, said LTB, or said AB5 toxin.
(22) An immunogenic composition comprising norovirus virus-like particles (norovirus VLPs), preferably VLPs of a genogroup I norovirus and/or VLPs of a genogroup II norovirus, and at least one B subunit of an AB5 toxin as adjuvant.
(23) The immunogenic composition according to item (22), wherein said VLPs comprise or consist of (a) NoV antigen(s) as defined in items (a) to (k) below.
(24) The immunogenic composition according to item (21) or (22), wherein said B subunit of an AB5 toxin is CTB that is a protein as defined in any one of items (A) to (I) below, or said B subunit of an AB5 toxin is LTB that is a protein as defined in any one of items (A′) to (I′) below, preferably said B subunit is said CTB.
(25) The immunogenic composition according to any one of items (22) to (24), said immunogenic composition comprising VLPs comprising, preferably consisting of, norovirus genogroup I antigen(s) and VLPs comprising, preferably consisting of, norovirus genogroup II antigen(s).
(26) The immunogenic composition according to item (25), wherein said norovirus genogroup I antigen(s) is/are genotype I.4 antigens and said norovirus genogroup II antigen(s) is/are genotype II.4 antigens.
(27) The immunogenic composition according to any one of items (1) to (26) for use in a method of preventing and/or treating Norovirus infection in a mammal, preferably in a human.
(28) An immunogenic composition for use in a method of preventing and/or treating Norovirus infection and infection by a bacterial pathogen in a mammal, preferably in a human, said immunogenic composition comprising a noroviral antigen as defined in any of items (1) to (26) and a B subunit of a bacterial AB5 toxin capable of generating an immune response against said bacterial pathogen.
(29) The immunogenic composition for the use according to item (27) or (28), wherein the use comprises parenteral administration of the immunogenic composition to a subject.
(30) The immunogenic composition for the use according to item (29), wherein said parenteral administration is intravenous administration.
(31) The immunogenic composition for the use according to item (29), wherein said parenteral administration is intradermal, intramuscular or subcutaneous administration.
(32) The immunogenic composition for the use according to item (31), wherein said immunogenic composition is preferably as defined in any one of items (24), (25) and (26).
(33) The immunogenic composition for the use according to item (27) or (28), wherein the use comprises intranasal, oral, sublingual or buccal administration of the immunogenic composition to a subject.
(34) An anti-norovirus vaccine or a pharmaceutical composition, comprising the immunogenic composition according to any one of items (1) to (33) and preferably a pharmaceutically acceptable carrier.
(35) The anti-norovirus vaccine or a pharmaceutical composition according to item (34), for use in a method of treating or preventing norovirus infection or for reducing severity of norovirus infection in a subject, such as by parenteral administration, notably by intradermal, intramuscular or subcutaneous administration.
(36) The anti-norovirus vaccine or a pharmaceutical composition according to item (34) or (35), for use in a method of treating or preventing or reducing the severity of, preferably preventing, gastroenteritis caused by NoV infection.
(37) The norovirus vaccine or pharmaceutical composition according to item (34), (35) or (36) that is capable of improving the Th1 immune response against the antigen(s) or of increasing the ratio of the Th1 immune response to the The2 immune response against the antigen(s) in a subject.
(38) A single-dose dosage form of an anti-norovirus vaccine comprising the anti-norovirus vaccine according to any one of items (34) to (37) and a pharmaceutically acceptable carrier, said dosage form comprising from 10 to 1000 μg, preferably from 30 to 300 μg, more preferably from 55 to 150 μg of said at least one or more Norovirus antigen(s).
(39) A vaccine for use in preventing or treating norovirus infection and infection by a bacterial pathogen, said vaccine comprising at least one norovirus antigen according to any one of the preceding items and a B subunit of an AB5 toxin capable of generating an immune response against said bacterial pathogen.
(40) The vaccine according to item (39), wherein said bacterial pathogen is selected from the group of Vibrio cholerae and E. choli.
(41) A method of preventing or treating norovirus infection, comprising administering to a subject the immunogenic composition as defined in any one of items (1) to (33) or a vaccine according to item (34), (35), (36), (37) or (39) or a single dosage form according to (38).
(42) Use of a B subunit of a bacterial AB5 toxin for reducing interference of the immune response in a subject against a noroviral genogroup I antigen by a noroviral genogroup II antigen. These antigens may be present in an immunogenic composition comprising the noroviral genogroup I antigen and the noroviral genogroup II antigen.
(43) The use of item (42), wherein said B subunit of a bacterial AB5 toxin is CTB or LTB, preferably as defined in item (21) and/or (24).
(44) The immunogenic composition according to any one of items (1) to (33), wherein said composition does not contain an A subunit of an AB5 toxin and does not contain an aluminum salt (e.g. aluminum hydroxide, alum).
(45) Use of a B subunit of a bacterial AB5 toxin for improving the Th1 immune response against an immunogenic composition comprising one or more norovirus antigen(s) as defined in any one of items (1) to (33) in a subject, preferably for increasing the ratio of the Th1 immune response to the Th2 immune response in a subject to said one or more norovirus antigen(s).
The immunogenic compositions of the invention comprise, apart from at least one norovirus antigen, at least one B subunit of an AB5 toxin, such as CTB or LTB. The present inventors have found immunogenic compositions, and vaccines containing them, that are immunogenic against norovirus (NoV) antigens and have surprisingly high immunogenic activity, particularly if administered parenterally. In particular, the antigenic compositions and vaccines of the invention have high ability to generate NoV GI-specific serum antibodies that block the binding of NoV VLPs to pig gastric mucin (PGM) as a source of histo-blood group antigens (HBGA). The inventors have also found that use of CTB or LTB as adjuvant allows obtaining a more balanced Th1/Th2 immune response compared to immunogenic compositions not containing it and/or compared to immunogenic compositions containing alum as adjuvant. The B subunit of AB5 toxins, such as CTB or LTB, stimulates much stronger Th1 immune response than alum, particularly if administered parenterally. This is a surprising finding, as according to Estes et al. (J. Inf. Diseases, 18 (2000) S367-S373), use of CT as adjuvant for oral delivery of norovirus VLPs leads to stronger Th2 immune response. Th1 cells generate responses against intracellular parasites such as bacteria and viruses, Th2 cells produce immune responses against extracellular parasites (Mosmann T R et al., 1986, J Immunol., 136:2348-2357; O'Garra A & Arai N, 2000, Trends Cell Biol., 10:542-550). Strong Th1 immune response is an important quality parameter for antiviral vaccines like vaccine against noroviruses.
The inventors have further found that the adjuvant used in the invention reduces and reverses an inhibitory effect (interference) on an immune response to a NoV antigen of a first genogroup or genotype by co-administration of a NoV antigen of a second genogroup or genotype, and can additionally boost the humoral immune response. In particular, the inventors have found that the adjuvant used in the invention reduces and reverses an inhibitory effect on an immune response to a NoV genogroup I antigen by co-administration of a NoV genogroup II antigen.
Noroviruses are non-enveloped single-stranded positive-sense RNA viruses. They belong to the family Calciviridae. A key structural component of norovirus particles is the VP1 protein. The size of the NoV particle varies between 23 and 40 nm in diameter. Depending on the size, the number of VP1 molecules per viral particle is generally either 60 or 180 molecules (http://viraizone.expasy.org/194). There are five different genogroups of noroviruses (GI, GII, GIII, GIV, and GV) that can be further divided into genotypes. Examples of noroviruses are Norwalk virus (GenBank: AF093797.1), GI.1 strain Aichi/124-89/JP (GenBank: BAA834130), GI.2 strain Funabashi258/96/JP (GenBank: BAC05516), Maryland virus (MV, AY032605), GI.3 strain Shimizu/KK2866/JP (GenBank: A1173765), GII.17 strain C142/1978/GUF (GenBank: AGI17592), GI.4 strain Chiba407/87/JP (GenBank: BAA82106), GI.7 strain TCH-060/USA/2003 (GenBank: AEQ77282), GII.4 strain NU2014/GII.4/Groningen01 (GeneBank: CRL46961), GII.4 strain Aomori2/2006/JP (GenBank: BAG70446), GIV.1 strain Ahrenshoop246/DEU/2012 (GenBank: AFN61315), GII.17 strain JP/2002/Saitama/T87 (GenBank: AII73747), Jena virus (JV, AJ01099), GII.4 strain Sydney/NSW0514/2012/AU (GenBank: AFV08795), GII.3 strain Kashiwa336/00/JP (GenBank: AAZ66774), GII.17 strain JP/2013//Saitama5203 (GenBank: BAR63715), Seto virus (GenBank: AB031013). There are many other norovirus strains the complete genomes of which are annotated in publicly available databases (www.viprbrc.org). Table 1A and B list several NoV strains.
NoV Antigen(s) of the Invention
The immunogenic composition of the invention comprises at least one norovirus (NoV) antigen and at least one adjuvant. A NoV antigen according to the invention is a protein. The NoV antigen is generally a NoV capsid protein or a fragment or derivative thereof. NoV capsid proteins are the VP1 and the VP2 protein, whereby the VP1 protein, fragments and derivatives thereof are preferred for use as an antigen in the present invention, as they may form virus-like particles (VLPs). However, VP2 may also be contained in the immunogenic composition. Table 1B contains the amino acid sequences of VP1 proteins of several NoV strains (SEQ ID NOs 1 to 78). As can be seen, there is considerable variability among VP1 proteins. Thus, the antigen and VP1 protein of the invention are not limited to any specific antigen or VP1 protein of a NoV occurring in nature, but cover fragments, derivatives and fusion proteins of such specific antigen or VP1 protein.
The NoV antigen or the VP1 protein of the invention may be a protein
(a) the amino acid sequence of which consists of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(b) the amino acid sequence of which consists of an amino acid sequence of at least 300, preferably at least 400, more preferably at least 450, even more preferably at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(c) the amino acid sequence of which comprises an amino acid sequence of at least 300, preferably at least 400, more preferably at least 450, even more preferably at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(d) the amino acid sequence of which has an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(e) the amino acid sequence of which has a length of at least 300 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to at least a segment of at least 300 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(f) the amino acid sequence of which has a length of at least 400, preferably at least 450, amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to at least a segment of at least 400, preferably at least 450, respectively, contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(g) the amino acid sequence of which has a length of at least 500 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to at least a segment of at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(h) the amino acid sequence of which has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid residue deletions, substitutions, additions or insertions compared to an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(i) the amino acid sequence of which has a length of at least 300 amino acid residues and has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 300 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(j) the amino acid sequence of which has a length of at least 400, preferably at least 450, amino acid residues and has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 400, preferably at least 450, respectively, contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78; or
(k) the amino acid sequence of which has a length of at least 500 amino acid residues and has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78.
The antigen or protein defined above may have a maximum length in terms of number of amino acid residues of 550 amino acid residues, preferably 520 amino acid residues.
SEQ ID NOs: 1 to 78 are also referred to herein as “reference sequences”. A definition following the wording “protein the amino acid sequence of which . . . ” defines the entire amino acid sequence of the protein (not just a part thereof). The expression “an amino acid sequence selected from any one of SEQ ID NOs: 1 to 78” means the entire amino acid sequence of any one of SEQ ID NOs: 1 to 78, respectively, unless explicit reference is made to a “segment” or “portion”. A “segment” or “portion” of an amino acid sequence is a partial sequence (or fragment) of contiguous amino acid residues of any given number of amino acid residues of the amino acid sequence which is referred to. The length of an amino acid sequence is measured by the number of amino acid residues it consists of. Amino acid sequence identities may be determined by protein sequence search and alignment programs freely accessible from internet, for example PROTEIN BLAST (https://blast.ncbi.nlm.nih.gov/Blast.cgi?PAGE=Proteins) and ExPASy (http://web.expasy.org/sim/). A comprehensive list of sequence alignment tools can be found at http://molbiol-tools.ca/Alignments.htm.
The NoV antigen may be a NoV VP1 protein of any NoV genogroup, a fragment of such protein, a derivative of the protein or the fragment, or a protein comprising an amino acid sequence of a NoV VP1 protein or derivative, as defined above in items (a) to (k). Preferably, the antigen is an antigen of genogroups I, II or IV, especially a VP1 protein of genogroups I, II or IV.
The antigen or protein may have amino acid deletions, substitutions, additions or insertions compared to the reference sequences indicated above. Among these, deletions, substitutions, and additions are preferred. The number(s) of such alterations indicated above refer to the sum of all deletions, substitutions, additions and insertions. The term “insertion” relates to insertions within the amino acid sequence of a reference sequence, i.e. excluding additions at the C- or N-terminal end. The term additions means additions at the C- or N-terminal end of the amino acid sequence of a reference sequence. A deletion may be a deletion of a terminal or an internal amino acid residue of a reference sequence.
A fragment of a protein antigen such as of the NoV VP1 protein may be any protein fragment having a length of at least 300, preferably at least 400, more preferably at least 450, and even more preferably at least 500 contiguous amino acid residues of a VP1 protein of any NoV found in nature or those given in Table 1B. A fragment may be as defined in item (b) above, but having less amino acid residues than the reference sequence. If, as is preferred, the composition contains VLPs as an antigen, the antigen forming the VLPs must have a sufficient length to form VLPs. Whether VLPs are formed can be determined by established methods such as by electron microscopy (Laue M & Banned N., 2010, J Applied Microbiol., 109:1159-1168; Harris J R, 1999, Methods Mol Biol., 117:13-30; Pogan R et al., 2018, J Phys.: Condens. Matter, 30: 064006) or by size exclusion chromatography (Effio C L et al., 2016, Vaccine, 34:1259-1267).
A derivative or derivative of a fragment of a VP1 protein may be as defined above in any one of items (d) to (k). A protein comprising a NoV antigen or VP1 protein, or a fragment or derivative thereof may be a fusion protein comprising the antigen or VP1 protein, fragment or derivative, respectively, and an added domain or sequence stretch such as a signal sequence or a purification tag. Such added domain or sequence stretch may be added at the N- or C-terminus of the VP1 protein, fragment or derivative, and may consist of not more than 30, preferably not more than 20, more preferably not more than 10 amino acid residues. It is also possible that the antigen contains a covalently bound non-proteinaceous covalent modification, such as a PEGylation.
A NoV antigen for use in the invention, such as the VP1 protein or a fragment or derivative thereof, may be from any NoV found in nature, preferably an antigen is an antigen of NoV genogroups I, II or IV. The antigen may be of any NoV genogroup and/or any genotype, such as those listed in Table 1A or B. In one embodiment, the NoV antigen is from a genogroup I NoV. In another embodiment, the NoV antigen is from a genogroup II NoV. Among these genogroups, the composition of the invention may contain at least an antigen of a NoV of genogroup II. A given NoV antigen of any one of the above items (a) to (k) is considered a NoV antigen of the genogroup and/or genotype indicated in Table 1A or 1B for the SEQ ID NO for which the definition of items (a) to (k) applies. Where a given NoV antigen may, according to the definition of items (a) to (k), belong to more than one genogroup or genotype, it is an antigen of the genogroup or genotype to which it has a higher sequence identity, e.g. over the entire length of the respective reference sequence.
A NoV antigen of genogroup I may be a protein
(a′) the amino acid sequence of which comprises or consists of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(b′) the amino acid sequence of which consists of an amino acid sequence of at least 300, preferably at least 400, more preferably at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(c′) the amino acid sequence of which comprises an amino acid sequence of at least 300, preferably at least 400, more preferably at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(d′) the amino acid sequence of which has an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95% to an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(e′) the amino acid sequence of which has a length of at least 300 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to at least a segment of at least 300 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(f′) the amino acid sequence of which has a length of at least 400, preferably at least 450, amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to at least a segment of at least 400, preferably at least 450, respectively, contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(g′) the amino acid sequence of which has a length of at least 500 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 70%, preferably at least 80%, more preferably at least 85%, even more preferably at least 90%, and most preferably at least 95%, to at least a segment of at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(h′) the amino acid sequence of which has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(i′) the amino acid sequence of which has a length of at least 300 amino acid residues and having from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 300 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(j′) the amino acid sequence of which has a length of at least 400, preferably at least 450, amino acid residues and has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 400, preferably at least 450, respectively, contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22; or
(k′) the amino acid sequence of which has a length of at least 500 amino acid residues and has from 1 to 100, preferably from 1 to 80, more preferably from 1 to 60, more preferably from 1 to 40, more preferably from 1 to 30, more preferably from 1 to 20, even more preferably from 1 to 10, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 500 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22.
A NoV antigen of genogroup II may be a protein as defined in above items (a′) to (k′) except that the wording “an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22” is replaced by “an amino acid sequence selected from any one of SEQ ID NOs: 23 to 75”. A NoV antigen of genogroup IV may be a protein as defined in above items (a′) to (k′) except that the wording “an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22” is replaced by “an amino acid sequence selected from any one of SEQ ID NOs: 76 to 78”.
An antigen of genogroup I may be of any one or more of the following genotypes: I.1, I.2, I.3, I.4, I.5, I.6, I.7, I.8, or I.9. An antigen of genogroup II may be an antigen of any one or more of the following genotypes: II.1, II.2, II.3, II.4, II.5, II.6, II.7, II.8, II.12, II.13, II.14, II.17, II.21, II.22, II.24, or II.25. An antigen of genogroup IV may be an antigen of any one or more of the following genotypes: IV.1 or IV.3.
A NoV antigen of genotype I.1 (GI.1) may be a protein as defined in above items (a′) to (k′) except that the wording “an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22” is replaced by “an amino acid sequence selected from any one of SEQ ID NOs: 5 or 6”. A NoV antigen of any other genotype listed in Table 1B is defined accordingly by substituting the SEQ ID NO of the previous sentence by those given in Table 1A or 1B for the respective genotype. For example, a NoV antigen of genotype I.4 (GI.4) may be a protein as defined in above items (a′) to (k′) for the amino acid sequence of SEQ ID NO: 13 or 14. A NoV antigen of genotype II.4 may be a protein as defined in above items (a′) to (k′) for the amino acid sequence selected from any one of SEQ ID NOs: 40-54. A NoV antigen of genotype II.6 may be a protein as defined in above items (a′) to (k′) for the amino acid sequence selected from any one of SEQ ID NOs: 56-58.
Among NoV antigens of genogroup I, those of genotype I.1 and I.4 are preferred, those of genotype I.4 are more preferred. Among NoV antigens of genogroup II, those of genotypes II.1 (GII.1), II.4 (GII.4), II.6 (GII.6), and II.17 (GII.17) are preferred, those of genotypes II.1 (GII.1), II.4 (GII.4), and II.6 (GII.6) are more preferred, and those of genotype II.4 are even more preferred in the present invention.
Adjuvant Used in the Invention
The immunogenic composition of the invention comprises, apart from the at least one NoV antigen, at least one adjuvant (also referred to as “vaccine adjuvant”). Adjuvants are pharmacological or immunological agents that boost the immune response after administration to a subject, which generally leads to higher titer of antibodies and longer-lasting immune protection. Adjuvants may also modulate the immune response, for example may affect the balance between cellular and humoral immune responses. Vaccine adjuvants are described in numerous research publications as well as in review articles (Lee S. & Nguen M T., 2015, Immune Netw., 15:51-57; Di Pasquale A et al., 2015, Vaccines, 3:320-343; Cimica, V, & Galarza, J M., 2017, Clin. Immunol., 183:99-108; McKee A S & Marrack P., 2017, Curr. Opin. Immunol., 47:44-51). However, only few adjuvants are currently used in vaccines that are approved for use in humans. These adjuvants include aluminum salts, oil-in water emulsions (MF59 and AS03), and a few more have been tested in clinical trials (CpG, Flagellin, PolyI:C, AS1, AS2, ISCOS and ISCOMMATRIX (Lee S. & Nguen M T., 2015, Immune Netw., 15:51-57). Adjuvants are frequently classified by their mode of action and/or preferred route of application. Following their mode of action, some of the adjuvants belong to the group of Toll-like Receptor (TLR) agonists. Examples of adjuvants or adjuvant classes are: TLR (toll-like receptor) agonists such as CpG (TLR9 agonist), poly (U) (TLR7/8 agonist), bacterial endotoxin derivatives like monophosphoryl lipid A or MPLA (TLR4 agonist), etc.
Bacterial exotoxins and their fusions can also act as adjuvants in a vaccine composition. Some bacterial exotoxins have been used in immunogenicity studies. These include Cholera toxin (CT) that is produced by the bacterium Vibrio cholerae and consists of two subunits: the toxic subunit A (CTA) and the non-toxic subunit B (CTB) that forms a homopentameric structure (Lemcer, W I & Tsai, B. 2003, Trends Biochem. Sci., 28:639-645; Chinnapen, D J, et al., 2007, FEMS Microbiol. Le., 266:129-137; Wernick, N L, et al., 2010, Toxins 2:310-325). Another bacterial exotoxin that is identical or very similar in terms of tertiary and quaternary structure to CT is heat-labile enterotoxin of E. coli (LT). CT and LT are highly homologous and show about 80% of homology. For review of CT-like enterotoxins, please refer to Basset, C et al., 2010, Toxins, 2:1774-17795. Like CT, LT also consists of two subunits the toxic subunit A (LTA) and the non-toxic subunit B (LTB) that forms a pentameric structure. Non-toxic LT mutants and derivatives thereof can serve as adjuvants (for review, please refer to Ma, Y, 2016, Expert Rev. Vaccines, 15:1361-1371). The LT and CT can be structurally classified and are known in the art as AB5 multimeric proteins or AB5 toxins and consist of single catalytic A subunit and pentameric B oligomer (Burnett, W N, 1994, Structure, 2:151-158). For a review on AB5 toxins, reference is made to Merritt, E A & Hol, W G., 1995, Curr. Opin. Struct. Biol., 5:165-171; Beddoe T, et al., 2010 Trends Biochem. Sci. 35:411-418.
LTB, like CTB, was successfully used in animal studies as mucosal adjuvant and for parenteral administration, as fusion with antigen of interest (Zhang, J, et al., 2016, Vaccine, 34:622-629; Marchioro, S B, et al., 2014, Vaccine, 32:4689-4694). Clinical trials to evaluate safety and immunogenicity of orally delivered vaccine against enterotoxigenic Escherichia coli (ETEC), composed of inactivated recombinant E. coli expressing increased levels of ETEC colonization factors and LTB/CTB hybrid protein showed that presence of hybrid LTB/CTB protein does not change the safety profile, but increases the strength and quality of the immune responses (Lundgren, A, et al., 2013, Vaccine, 31:1163-1170). Use of bacterial exotoxins as mucosal adjuvants in combination with norovirus antigens was described in the past, for heat-labile E. coli toxin LT and its non-toxic mutant R192G (Nicollier-Jamot, B, et al., 2004, Vaccine, 22:1079-86; Clements, J D & Norton, E B, 2018, mSphere, 3:e00215-18). U.S. Pat. No. 7,527,801 describes the use of the non-toxic LT mutants LTK63 or LTR72. In this invention, preference is given not to mutant versions of exotoxins, but to their B subunits of, preferably, recombinant origin and to parenteral delivery route of administration of the vaccine in the absence of the A subunit.
In one embodiment of the invention, the adjuvant (or co-antigen) used is a CTB. The CTB usable in the invention may be a protein
(A) the amino acid sequence of which comprises or consists of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(B) the amino acid sequence of which consists of an amino acid sequence of at least 90, preferably at least 100 amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(C) the amino acid sequence of which comprises an amino acid sequence of at least 90, preferably at least 100 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(D) the amino acid sequence of which has an amino acid sequence identity of at least 85%, preferably at least 90%, more preferably at least 95%, to an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(E) the amino acid sequence of which has a length of at least 90 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 85%, preferably at least 90%, more preferably at least 95%, to at least a segment of at least 90 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(F) the amino acid sequence of which has a length of at least 100 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 85%, preferably at least 90%, more preferably at least 95%, to at least a segment of at least 100 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(G) the amino acid sequence of which has from 1 to 15, preferably from 1 to 10, more preferably from 1 to 5, and even more preferably from 1 to 3, amino acid residue deletions, substitutions, additions or insertions compared to an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(H) the amino acid sequence of which has a length of at least 90 amino acid residues and has from 1 to 15, preferably from 1 to 10, more preferably from 1 to 5, and even more preferably from 1 to 3, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 90 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96; or
(I) the amino acid sequence of which has a length of at least 100 amino acid residues and having from 1 to 15, preferably from 1 to 10, more preferably from 1 to 5, and even more preferably from 1 to 3, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 100 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 79 to 96.
In another embodiment of the invention, the adjuvant (or co-antigen) used is an LTB. The LTB usable in the invention may be a protein
(A′) the amino acid sequence of which comprises or consists of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(B′) the amino acid sequence of which consists of an amino acid sequence of at least 90, preferably at least 100 amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(C′) the amino acid sequence of which comprises an amino acid sequence of at least 90, preferably at least 100 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(D′) the amino acid sequence of which has an amino acid sequence identity of at least 85%, preferably at least 90%, more preferably at least 95%, to an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(E′) the amino acid sequence of which has a length of at least 90 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 85%, preferably at least 90%, more preferably at least 95%, to at least a segment of at least 90 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(F′) the amino acid sequence of which has a length of at least 100 amino acid residues, said amino acid sequence having an amino acid sequence identity of at least 85%, preferably at least 90%, more preferably at least 95%, to at least a segment of at least 100 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(G′) the amino acid sequence of which has from 1 to 15, preferably from 1 to 10, more preferably from 1 to 5, and even more preferably from 1 to 3, amino acid residue deletions, substitutions, additions or insertions compared to an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(H′) the amino acid sequence of which has a length of at least 90 amino acid residues and has from 1 to 15, preferably from 1 to 10, more preferably from 1 to 5, and even more preferably from 1 to 3, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 90 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100; or
(I′) the amino acid sequence of which has a length of at least 100 amino acid residues and having from 1 to 15, preferably from 1 to 10, more preferably from 1 to 5, and even more preferably from 1 to 3, amino acid deletions, substitutions, additions or insertions compared to a segment of at least 100 contiguous amino acid residues of an amino acid sequence selected from any one of SEQ ID NOs: 97 to 100.
The definitions given above with regard to the wording of items (a) to (k) also apply to the above items (A) to (I) and (A′) to (I′). As above, a “segment” or “portion” of an amino acid sequence is a partial sequence (or fragment) of contiguous amino acid residues of any given number of amino acid residues of the amino acid sequence of a reference sequence. The length of an amino acid sequence is measured by the number of amino acid residues it consists of. Amino acid sequence identities may be determined as described above in the context of the antigen of the invention. Similarly, sequence identities are determined as defined above. Also, the above definitions regarding amino acid deletions, substitutions, additions or insertions as defined above apply analogously.
Preferably, the CTB used in the invention such as those defined in items (A) to (I) above has a pentameric quaternary structure, e.g. as CTB does in CT. Whether CTB forms a pentameric quaternary structure, as opposed to being monomeric, can be determined using MALDI mass spectroscopy, non-denaturing gel chromatography or by size-exclusion chromatography. These methods are known to the skilled person. In another embodiment, the CTB is monomeric CTB.
Two or more variants of the CTB as defined above may be combined in an immunogenic composition of the invention. In such case, any amounts or mixing ratios disclosed herein refer to the sum of all CTB variants according to the invention.
Similarly, the LTB used in the invention such as those defined in items (A′) to (I′) above has a pentameric quaternary structure, e.g. as LTB does in LT. Whether LTB forms a pentameric quaternary structure, as opposed to being monomeric, can be determined using MALDI mass spectroscopy, non-denaturing gel chromatography or by size-exclusion chromatography. These methods are known to the skilled person. In another embodiment, the LTB is monomeric LTB.
Two or more variants of the LTB as defined above may be combined in an immunogenic composition of the invention. In such case, any amounts or mixing ratios disclosed herein refer to the sum of all LTB variants according to the invention.
In a further alternative, one or more CTB as defined above may be combined with one or more LTB as defined above in an immunogenic composition of the invention. In such case, any amounts or mixing ratios disclosed herein refer to the sum of all LTB and all CTB variants.
Examples of amino acid sequences of the CTB for use in the invention are provided in Table 2. Examples of amino acid sequences of the LTB for use in the invention are provided in Table 3. Modifications such as mutations may be made to alter some properties of the CTB or LTB, such as expression yield, or to express it in a desired compartment of the cell or plant where it is expressed. Further or alternatively, a purification tag may be added.
Use of CTB as vaccine adjuvant or as antigen as well as antigen fusion is described in review articles (Holgren, J, et al., 1994, Am. J. Trop. Med. Hyg., 50:42-54; Lebens, M. & Holmgren, J. 1994, Dev. Biol. Stand., 82:215-227; Sun, J B., et al., 2010, Scand. J. Immunol., 71:1-11; Baldauf K J, et al., 2015, Toxins, 7:974-996; Stratmann, T., 2015, Vaccines, 3, 579-596). CTB is usually used in vaccines for mucosal (predominantly oral or intranasal) route of delivery. CTB is known to trigger humoral immune responses in vaccines administered via the mucosal route (Holmgren et al., 2005, Immunol. Lett., 97:181-188; Holgren et al., 2003, Expert Rev. Vaccines, 2:205-217). A similar effect of Cholera Toxin applied as mucosal adjuvant with plant-made Norwalk virus VLPs was shown (Velaskuez et al., 2010, Clinical & Vaccine Immunol., 17:1850-1858). However, use of CTB as adjuvant in combination with baculovirus-produced noroviral VLPs does not seem to increase mucosal immune responses when delivered orally (Huo, Y et al., 2015, Mol. Immunol., 68:367-72). Similar data were obtained for intranasal delivery of plant-made VLPs in combination with recombinant CTB (Flarebio Biotech LLC, USA) (please refer to Example 4,
Surprisingly, as found in the present invention, NoV antigens such as NoV VLPs with CTB showed much better results when delivered parenterally (such as intramuscular (IM), subcutaneous (SC) or intradermal (ID)). The immune responses were comparable to and sometimes higher than the immune responses produced by formulations with much higher content (in terms of mass) of aluminum hydroxide (see Examples 1 and 2,
Accordingly, the B subunit of a bacterial AB5 toxin such as CTB or LTB can be used for reducing interference of the immune response in a subject against a noroviral genogroup I antigen by a noroviral genogroup II antigen. These antigens may be present in an immunogenic composition comprising the noroviral genogroup I antigen and the noroviral genogroup II antigen.
Accordingly, the B subunit of a bacterial AB5 toxin can also be used, as component of an immunogenic composition comprising one or more NoV antigens as described therein, for preventing and/or treating Norovirus infection and infection by a bacterial pathogen in a mammal, preferably in a human. Further, the B subunit of a bacterial AB5 toxin can be used for improving the Th1 immune response to an immunogenic composition comprising one or more norovirus antigen(s) as defined herein in a subject. Preferably, the B subunit of a bacterial AB5 toxin can be used for increasing the ratio of the Th1 immune response to the Th2 immune response, in a subject, to the one or more norovirus antigen(s) described herein. In these uses, CTB or LTB are the preferred B subunits of the AB5 toxin.
CTB for use in the invention can be obtained from commercial sources. CTB can be expressed as wild-type or mutated versions with enhanced properties, e.g. yield, stability, post-translational modifications, or in the form of fusions to antigens in a variety of organisms, including prokaryotes like E. coli or eukaryots like green plants (Miata, T., et al., 2012, Vaccine; 30(28):4225-32; Hamorsky, K T., et al., 2013, PLoS Negl Trop Dis., 7(3):e2046; Hamorsky, K T., et al., 2015, Sci Rep. 2015 Jan. 23; 5:8003; Stratmann, T., 2015, Vaccines, 3, 579-596). Further, CTB may be expressed in plants analogously as described below for the antigen and in EXAMPLE 6. This allows any modification or mutation desired to be made such as those given in Table 2. In an important embodiment of the invention, the immunogenic composition or vaccine does not contain alum (aluminum hydroxide).
LTB for use in the invention can be obtained from commercial sources (for example, supplied by Merck recombinant LTB produced in Pichia pastoris, Cat. No. E8656). LTB can be expressed as wild-type or mutated versions with enhanced properties, e.g. yield, stability, post-translational modifications, or in the form of fusions to antigens in a variety of organisms, including prokaryotes like E. coli or eukaryotes like yeasts and green plants (Pillai, D, et al., 1996, FEBS Lett., 387:23-26; Lim, J G, et al., 2009, J. Microbiol. Biotechnol., 19:502-510; Wagner, B, et al., 2004, J. Immunol. Methods, 287:203-215; Sim, J S, et al., 2009, Plant Mol. Biol. Rep., 27:388-399; Soh, H S, et al., 2015, SpringerPlus, 4:148). Further, LTB may be expressed in plants analogously as described below for the antigen and in EXAMPLE 6. This allows any modification or mutation desired to be made such as those given in Table 3.
Immunogenic Composition of the Invention
The immunogenic composition of the invention comprises at least one NoV antigen and an adjuvant. It may comprise two or more different NoV antigens, such as two or more VP1 proteins, in order to generate immune responses in a mammal against multiple NoV antigens at the same time, such as three different NoV antigens. The NoV antigen(s) used in the composition of the invention depend on the NoV or NoVs against which immunization in a mammal should be achieved using the vaccine of the invention. As NoVs that cause infections in mammals evolve, the antigen(s) used in the composition may be changed or adapted so as to cause immune response in a subject against the NoVs considered a health risk. As mentioned above, composition of the invention may contain a NoV antigen from any NoV genogroup such as GI, GII or GIV. The composition may contain one NoV antigen from any of these genogroups. However, if it contains only one antigen, this antigen may be from genogroup II, since NoV of this genogroup has more frequently caused health risks in past years. Preferably, the composition of the invention comprises two or more different NoV antigens that may be antigens of two or more different NoV genogroups. In preferred embodiments, the immunogenic composition of the invention comprises at least two NoV antigens from two different NoV genogroups, preferably an antigen from a NoV genogroup I and an antigen of a NoV genogroup II. In a further embodiment, the immunogenic composition comprises two or more antigens from one NoV genogroup, preferably of genogroup II. An antigen from any genogroup I NoV listed in Table 1A or 1B may be combined with an antigen from any genogroup II NoV listed in Table 1A or 1B in the composition (and vaccine) of the invention. It is of course possible to add a further antigen from a genogroup I, genogroup II or another genogroup (e.g. those of Table 1A or B) to the composition of the invention.
Regarding genotypes of the antigens to be used in the composition of the invention, there are no particular limitations. Preferred genotypes of genogroup I are genotypes I.1 and I.4. Preferred genotype of genogroup II are genotypes II.4 and II.17. A more preferred genotype of genogroup II is genotype II.4. If the composition of the invention contains antigens from both genogroups I and II, an antigen from genotype I.4 and an antigen of genotype II.4 may be combined. As above, the antigens are preferably VP1 proteins. If the composition of the invention contains two or more NoV antigens or VP1 proteins, each may be as defined in items (a) to (k) above.
With regard to embodiments wherein an antigen from NoV genogroup I is combined with an antigen from NoV genogroup II, the following examples of immunogenic compositions may be mentioned:
Preferred is an embodiment, wherein the immunogenic composition contains an antigen of genotype I.1 or I.4 (GI.4) and an antigen of genotype II.4 (GII.4) or II.17. More preferred is an embodiment, wherein the immunogenic composition contains an antigen of genotype I.1 or I.4 (GI.4) and an antigen of genotype II.4 (GII.4). In all these embodiments, the immunogenic compositions further contain one or more adjuvants as described herein.
As mentioned above, the immunogenic composition may, in a further embodiment, comprises two or more antigens from one NoV genogroup, preferably of genogroup II. The immunogenic composition may comprise two different antigens of genogroup II noroviruses, such as an antigen of a first genotype of a genogroup II norovirus and an antigen of a second genotype of a genogroup II norovirus. For example, the composition may comprise an antigen (e.g. VP1 protein) of a genotype II.1 NoV and an antigen (e.g. VP1 protein) of a genotype II.4 NoV. Alternatively, the composition may comprise an antigen (e.g. VP1 protein) of a genotype II.1 NoV and an antigen (e.g. VP1 protein) of a genotype II.17 NoV. Alternatively, the composition may comprise an antigen (e.g. VP1 protein) of a genotype II.4 NoV and an antigen (e.g. VP1 protein) of a genotype II.17 NoV. A NoV antigen of genogroup II may be a protein as defined in above items (a′) to (k′) except that the wording “an amino acid sequence selected from any one of SEQ ID NOs: 1 to 22” is replaced by “an amino acid sequence selected from any one of SEQ ID NOs: 23 to 75”. Antigens of genotypes II.1, II.4 and II.17 may be selected from these SEQ ID NOs.
Derivatives of an antigen as defined above (e.g. in items (b) to (k)) are considered antigens of the genogroup and/or genotype to which the native antigen (e.g. of SEQ ID NOs 1 to 78) belongs. If an antigen such as a VP1 protein may, using this rule, belong to two different genogroups or genotypes, the antigen or derivative belongs to the genogroup or genotype to which the antigen or derivative is most similar in terms of amino acid sequence identity over the entire length of an amino acid sequence of a native VP1 protein such as of any one of SEQ ID NOs 1 to 78.
The immunogenic composition of the invention preferably contains NoV virus-like particles (norovirus VLPs or NoV VLPs) as the antigen(s). VLPs are viral particles consisting of virus structural protein(s), but do not contain viral nucleic acid. In the case of norovirus, VLPs consist of structural protein(s) VP1 or of VP1 and VP2 proteins (or any fragments or derivatives as described herein). The VLPs used in the invention comprise or consist of NoV capsid proteins as antigens, notably VP1 as defined herein. The VLPs may comprise or consists of a protein as defined in any one of items (a) to (k) above. Thus, the proteins of items (a) to (k) above are preferably capable of forming VLPs. Herein, a VLP comprises generally at least 60 VP1 molecules, preferably at least 80 VP1 molecules, more preferably at least 100 VP1 molecules. In a more preferred embodiment, a VLP comprises at least 60 protein molecules as defined in any one of items (a) to (k), preferably at least 80 protein molecules as defined in any one of items (a) to (k), more preferably at least 100 protein molecules as defined in any one of items (a) to (k).
The immunogenic composition of the invention may comprise the genogroup I noroviral antigen and the genogroup II noroviral antigen in a mass ratio range of from 1:1 to 1:6, preferably of from 1:1.5 to 1:5, more preferably of from 1:2 to 1:4. In another embodiment, the immunogenic composition of the invention comprises the genogroup I noroviral antigen and the genogroup II noroviral antigen in a mass ratio range of from 3:1 to 1:3, preferably of from 2:1 to 1:2, and more preferably of from 1.5:1 to 1:1.5, and even more preferably of from 1.2:1 to 1:1.2.
VLPs may comprise a protein as defined in any one of items (a) to (k) above and a further component. The further component may be a NoV VP2 protein or another (i.e. a different) NoV antigen as defined in any one of items (a) to (k). It is possible that a VLP contains two different antigens as defined in any one of items (a) to (k). However, if two or more different antigens are to be included in the composition as VLPs, it is preferred that VLPs of the first antigen are combined with VLPs of a second antigen, since this allows better control of the content of the two antigens in the immunogenic composition.
As described above, the immunogenic composition of the invention preferably contains antigens from two or more (or three or more) different NoV genogroups, such as an antigen from genogroup I and an antigen of genogroup II. The composition of the invention may contain VLPs comprising or consisting of each of these antigen(s). Preferably, the composition contains VLPs comprising or consisting of a NoV antigen of a first genogroup (e.g. genogroup I) and VLPs comprising or consisting of a NoV antigen of a second genogroup (e.g. genogroup II). With regard to embodiments wherein VLPs of a NoV antigen from genogroup I is combined with VLPs of an antigen from genogroup II, the following immunogenic compositions may be mentioned as examples:
a composition comprising VLPs consisting of or comprising an antigen of genotype I.1 and VLPs consisting of or comprising an antigen of genotype II.1;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.1 and VLPs consisting of or comprising an antigen of genotype II.4;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.1 and VLPs consisting of or comprising an antigen of genotype II.6;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.1 and VLPs consisting of or comprising an antigen of genotype II.2;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.1 and VLPs consisting of or comprising an antigen of genotype II.17;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.4 and VLPs consisting of or comprising an antigen of genotype II.1;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.4 and VLPs consisting of or comprising an antigen of genotype II.4; and
a composition comprising VLPs consisting of or comprising an antigen of genotype I.4 and VLPs consisting of or comprising an antigen of genotype II.6.
a composition comprising VLPs consisting of or comprising an antigen of genotype I.4 and VLPs consisting of or comprising an antigen of genotype II.2;
a composition comprising VLPs consisting of or comprising an antigen of genotype I.4 and VLPs consisting of or comprising an antigen of genotype II.17;
In a preferred embodiment, the immunogenic composition of the invention contains VLPs of a genotype I.4 antigen and VLPs of a genotype II.4 antigen, whereby each of the antigens may be VP1 proteins. In another embodiment, the immunogenic composition of the invention contains VLPs of a genotype I.1 antigen and VLPs of a genotype II.4 antigen, whereby each of the antigens may be VP1 proteins. In all these embodiments, each antigen may be as defined in items (a) to (k) above (but from the indicated genotype).
The immunogenic composition of the invention may comprise the genogroup I VLPs and the genogroup II VLPs in a mass ratio range of from 1:1 to 1:6, preferably of from 1:1.5 to 1:5, more preferably of from 1:2 to 1:4. In another embodiment, the immunogenic composition of the invention comprises the genogroup I VLPs and the genogroup II VLPs in a mass ratio range of from 3:1 to 1:3, preferably of from 2:1 to 1:2, and more preferably of from 1.5:1 to 1:1.5, and even more preferably of from 1.2:1 to 1:1.2.
As described above, the invention also provides immunogenic compositions that comprise two or more antigens from one NoV genogroup, preferably of genogroup II. Accordingly, the immunogenic composition of the invention may comprise VLPs consisting of or comprising an antigen of a first genotype of genogroup II NoV and VLPs consisting of or comprising an antigen of a second genotype of genogroup II NoV. In more detail, the immunogenic composition of the invention may comprise VLPs consisting of or comprising an antigen of genotype II.1 and VLPs consisting of or comprising an antigen of genotype II.4. Alternatively, the immunogenic composition may comprise VLPs consisting of or comprising an antigen of genotype II.1 and VLPs consisting of or comprising an antigen of genotype II.17. Alternatively, the immunogenic composition may comprise VLPs consisting of or comprising an antigen of genotype II.4 and VLPs consisting of or comprising an antigen of genotype II.17.
The invention also provides an immunogenic composition for use in a method of preventing and/or treating Norovirus infection and infection by a bacterial pathogen in a mammal, preferably in a human, said immunogenic composition comprising a noroviral antigen as defined above, preferably NoV VLPs as defined above, and a B subunit of a bacterial AB5 toxin capable of generating an immune response against said bacterial pathogen. The B subunit of a bacterial AB5 toxin may be CTB or LTB, preferably CTB, as defined above. Such immunogenic composition may be or may be used as a combination vaccine for preventing and/or treating Norovirus infection and infection by the bacterial pathogen. The amounts of NoV antigen, said B subunit and ratios thereof may be as mentioned herein.
For all embodiments mentioned above, the immunogenic composition of the invention does preferably not contain a nucleic acid encoding a NoV antigen(s).
The immunogenic composition of the invention comprises at least one NoV antigen as described above and at least one adjuvant as described above as components. The compositions are immunogenic in that they generate an immune response against the antigen(s) of the invention if the composition is administered to a mammal, such as a human. Further, a suitable carrier or excipient may be present in said compositions. The composition may be obtained by simply mixing the components, optionally in a suitably carrier, in desired amounts and mixing ratios. A suitable carrier may be water or an aqueous solution that should be at an appropriate pH such as from 6 to 8, preferably from 6.7 to 7.5. The aqueous solution may contain, apart from water, a buffer, a tonicity agent and/or a preservative as required.
The immunogenic composition may contain the at least one NoV antigen and the B subunit of the AB5 toxin (such as CTB) in a mass ratio range of from 1:0.1 to 1:5, preferably from 1:0.2 to 1:3, more preferably of from 1:0.5 to 1:2. The CTB may be one as defined in items (A) to (I) above. If more than one NoV antigen is present, these values apply to the sum of all NoV antigens. If more than one CTB is present, these values apply to the sum of all CTBs or CTB variants. Where the composition contains LTB, these ratio ranges apply analogously to the LTB.
The composition may contain further desired components, such as an additional adjuvant. An example of an additional adjuvant is aluminum hydroxide (alum) that is a generally know adjuvant for vaccines or other aluminum salts. The composition may contain the CTB and the further adjuvant in a mass ratio range of from 1:200 to 10:1, preferably of from 1:100 to 5:1, more preferably of from 1:30 to 1:1. If more than one additional adjuvant is contained, these values relate to the sum of all adjuvants other than the B subunit of the AB5 toxin (such as CTB).
Where the composition contains both a B subunit of the AB5 toxin (such as CTB) and an aluminum salt such as aluminum hydroxide (alum) as the further adjuvant, the composition may contain the B subunit of the AB5 toxin and the aluminum salt in a mass ratio range of from 1:50 to 20:1, preferably of from 1:20 to 10:1, more preferably of from 1:5 to 5:1, and even more preferably from 1:1 to 5:1. In one embodiment, the immunogenic composition (and the vaccine) does not contain an aluminum salt such as aluminum hydroxide (alum).
Where the composition contains both CTB and an aluminum salt such as aluminum hydroxide (alum) as the further adjuvant, the composition may contain the CTB and the aluminum salt in a mass ratio range of from 1:50 to 20:1, preferably of from 1:20 to 10:1, more preferably of from 1:5 to 5:1, and even more preferably from 1:1 to 5:1. In one embodiment, the immunogenic composition (and the vaccine) does not contain an aluminum salt such as aluminum hydroxide (alum).
The composition may be liquid or solid. If it is liquid, it may be a solution in water or an aqueous buffer. If it is solid, it may be a mixture of the NoV antigen(s), preferably the NoV VLPs of the invention, and the adjuvant (such as CTB) used in the invention. A preferred solid form is a lyophilized form.
For preparing the immunogenic composition of the invention, the one or more antigens, preferably in the form of VLPs, may be mixed with the adjuvant(s) preferably in or with a suitable carrier or medium. Preferably, VLPs comprising or consisting of antigens from a first genogroup or genotype may be mixed with VLPs comprising or consisting of antigens from a second genogroup or genotype with a suitable carrier or medium, followed by addition of the adjuvant(s). The carrier or medium may be water or an aqueous medium such as a solution. The aqueous medium may contain a buffer to control the pH and may contain physiologic saline and/or other additives. The additives can be, but are not limited to, sucrose, glycerol, trehalose. The antigen may be stored in an aqueous medium until the immunogenic composition or the vaccine of the invention are produced. For longer storage times, it may be frozen or lyophilized. After production of the immunogenic composition, it may be sterilized, e.g. by sterile filtration and stored. Storage may be in liquid form or frozen. It may also be stored after lyophilization as a dry powder.
The lyophilization of immunogenic composition and vaccines is well known in the art. Typically the composition is freeze dried in the presence of agents to protect the antigen and/or adjuvant of the invention during the lyophilization process and to yield powders with desirable characteristics. Sugars such as sucrose, mannitol, trehalose, or lactose (present at an initial concentration of 10-200 mg/mL) are commonly used for cryoprotection and lyoprotection of protein antigens and to yield lyophilized cake or powders with desirable characteristics. Lyophilized compositions may be more stable. Other drying technologies, such as spray drying or spray freeze drying may also be used.
The immunogenic composition of the invention does preferably not contain the A subunit of the AB5 toxin and/or does not contain an aluminum salt (e.g. aluminum hydroxide, alum).
Vaccine of the Invention
The vaccine of the invention comprises the immunogenic composition of the invention in a form suitable for administration to a subject or in a form that can, prior to administration, be easily brought in a form suitable for administration to a subject. For example, the vaccine may be a solid formulation that can be reconstituted prior to administration by addition of a predetermined amount of water or aqueous solution, suspension or emulsion. In general, the vaccine comprises, apart from the immunogenic composition, one or more pharmaceutical excipients or carriers. Excipients may be liquid or solid. Liquid excipients include, without limitation, water, alcohol, saline, and buffered solutions. Other possible excipients include, without limitation, preservatives and other additives such as antimicrobials, anti-oxidants, chelating agents, buffer substances. The immunogenic composition of the invention may itself be a vaccine in the sense of the invention.
The vaccine is an anti-NoV vaccine. It is at the same time a pharmaceutical composition. The vaccine is generally used for preventing or treating NoV infection in a subject, or for suppressing the severity of a NoV infection. The invention also provides a method of preventing or treating norovirus infection, or for suppressing the severity of a NoV infection, generally comprising administering to a subject the immunogenic composition or vaccine of the invention. Subjects in which NoV may be prevented or treated or in which the severity of a NoV infection may be suppressed are mammals, preferably humans. Among humans, both children and adults may be subjects for preventing or treating NoV infection. Among humans, children are preferred for achieving immunization early in life. Human subjects are considered children up to the age of 16. Preferably, the NoV vaccine is used in children of age between 1 and 16, preferably 2 to 14, and more preferably from 3 to 12 years of age.
As the vaccine is generally administered to subjects by injection, the norovirus vaccine is generally a liquid aqueous formulation. However, the norovirus vaccine may also be in solid form such as in a lyophilized form to be reconstituted with water or an aqueous medium before administration.
The vaccine of the invention is preferably administered to a subject parenterally. The parenteral administration may be intravenous, intradermal, intramuscular or subcutaneous administration. Preferred are intradermal, intramuscular or subcutaneous administration, more preferably intradermal and intramuscular administration. In one embodiment, the vaccine is administered intradermally. In another embodiment, the vaccine is administered intramuscularly.
When the vaccine is administered to a human subject, or in the method of the invention, the NoV antigen(s) is (are) administered in an amount of from 10 to 1000 μg, preferably from 30 to 300 μg, more preferably from 55 to 150 μg of NoV antigen. If the vaccine contains more than one NoV antigen, these amounts relate to the sum of the amounts of the individual antigens. If the vaccine contains antigens of genogroup I and antigens of genogroup II, the amount of the genogroup II antigen may be the same or higher than that of the genogroup I antigen. The amount of the genogroup II antigen(s) may be from 1.5 to 6 times, preferably from 2.0 to 5 times, more preferably from 2.5 to 4.5 times, and even more preferably from 3.0 to 4.0 times the amount of the genogroup I antigen(s) in terms of mass.
The vaccine may be packaged in a single-dose or multiple dose form in a container that contains the desired amount of the vaccine. Preferred are single-dose forms, where the single dose contains the administration amount of NoV antigen as given above. The single-dose form may comprise from 10 to 1000 μg, preferably from 30 to 300 μg, more preferably from 55 to 150 μg of NoV antigen(s). If the vaccine contains antigens of genotype I and antigens of genotype II, the ratios of these antigens may be as defined in the previous paragraph.
The vaccine may be administered once or twice to a subject for improving the immunity against NoV infection. If the vaccine to be administered twice, the second administration may be made within 2 to 8 weeks, preferably within 3 to 5 weeks after the first administration of the vaccine.
The vaccine of the invention may also contain antigens against other infectious diseases for generating immune protection not only against NoV, but also against other viruses. It may, for example, be considered to include into the vaccine rotavirus antigens to generate protection against NoV and rotavirus.
The inventors have found that the adjuvant of the invention itself acts as an antigen and can generate an immune response in a mammal, preferably a human, against it. The adjuvant of the invention is a B subunit of an AB5 toxin, such as CTB or LTB. CTB and LTB are proteins that are expressed or can be derived from Vibrio cholerae and E. choli, respectively. This finding opens up the possibility for providing a combination vaccine for preventing and/or treating Norovirus infection and infection by a bacterial pathogen in a mammal, preferably in a human, said vaccine comprising a noroviral antigen as defined in any preceding claims and a B subunit of a bacterial AB5 toxin capable of generating an immune response against these bacterial pathogens. Regarding excipients, routes of administration, amounts of NoV antigens to be administered, amounts of B subunits to be administered, etc. the conditions mentioned above on the immunogenic composition and vaccine apply also to this embodiment.
In one embodiment, the vaccine does not contain an aluminum salt such as aluminum hydroxide (alum). In another embodiment, the vaccine does not contain the A subunit of the bacterial AB5 toxin, i.e. is free of the A subunit. In a further embodiment, the vaccine does not contain an aluminum salt such as aluminum hydroxide (alum) and does also not contain the A subunit of the bacterial AB5 toxin. These preferred embodiments can be combined with other preferred embodiments described herein, e.g. preferred embodiments of the antigens and antigen combinations used.
Herein, the immunogenic composition, vaccine or pharmaceutical composition is considered not to contain the A subunit of the AB5 toxin (such as CT or LT) or to be free of the A subunit, if the content of the AB5 protein (toxin) (that contains the A subunit) is at most 1% of the content of the B protein (generally the B5 pentamer that is composed of only B subunit). The content of the AB5 protein relative to that of the B protein (or the B5 pentamer) may be determined by separating the proteins of the B subunit-containing sample, the proteins of the immunogenic composition, or the proteins of the vaccines using non-reducing SDS gel electrophoresis (Laemmli, U. K., 1970, Nature, 227: 680-685), detecting separated B subunit-containing proteins on the Coomassie-stained gel by employing a ChemiDoc™ Imaging System (Bio-Rad) equipped with Image Lab 6.0.1software, and determining the area under the curve for the bands of the AB5 protein and B protein (e.g. the B5 pentamer). The content of the AB5 protein is considered to be at most 1% of the content of the B protein (e.g. the B5 pentamer) (i.e. the B subunit-containing sample is free of the A subunit) if the area under the curve of the AB5 protein is at most 1% of the area under the curve of the B protein(s) (e.g. the B5 pentamer). The position of the bands of the AB5 protein and the B protein (e.g. the B5 protein) on the gel can be determined by the skilled person based on the known molecular weight of these proteins and the position on the gel, optionally with the help of suitable molecular weight markers.
If the composition or vaccine (or a sample) contains two or more different B subunits of AB5 toxins, the above test may be conducted for each B subunit-containing sample separately or on the same gel. The composition, vaccine or sample is free of the A subunit if the sum of the areas under the curve(s) of the AB5 proteins is at most 1% of the sum of the areas under the curve(s) of the B proteins.
Production of NoV Antigens
NoV antigens as described above can be expressed in and purified from different production hosts including mammalian cells, insect cells and plants (for review: Herbst-Kralovetz, M., Mason, H. S. & Chen, Q. 2010, Exp. Rev. Vaccines, 9:299-307). Reliable NoV antigen and NoV VLP purification protocols and modifications thereof have been described for insect cells using baculoviral expression system (Jiang, X. et al., 1992, J. Virol., 66:6527-6532; Prasad B W, Hardy D, Estes M. 2000, J. Infect. Dis., 181:S317S321; Huhti, L., et al., 2010, Arch. Virol., 155:1855-1858; Koho, T., et al., 2012, J. Virol. Methods, 181:6-11; Huhti, L., et al., 2013, Arch. Virol., 158:933-942; WO2013192604) and for plants (Santi L. et al., 2008, Vaccine, 26:1846-1854; Lai, H. & Chen, Q. 2012, Plant Cell Rep., 31:573-584). EP2601970 may also be considered regarding the production of NoV VLPs. Although there is no difference observed in the structure and immunogenic properties of VLPs isolated from insect and plant cells, a preferred system for VLP production is plant-based, as this allows avoiding baculoviral impurities in the antigen or VLPs isolated from plant tissues. In addition, plant-based transient expression systems, unlike the baculoviral one, are easily scalable. Successful expression of many NoV antigen genes in plants using plant virus-based expression system called magnICON® (Gleba et al., 2005, Vaccine, 23:17-18; Marillonnet et al., 2005, Nat. Biotechnol., 23:718-723; Gleba et al., Curr. Opin. Biotechnol., 2007, 18:134-141; Klimyuk, V., et al., 2014, Curr. Top. Microbiol. Immunol., 375:127-154) that allows to easily express viral VLPs in Nicotiana benthamiana plants (Zahin, M. et al., 2016, PLoS One, 11(8):e0160995). A list of NoV antigens (VP1 proteins) of various genotypes, expression of was done in plants and VLPs formation was confirmed is given Table 1B.
In more detail, the antigen of the invention may be produced by known methods of protein expression in a standard expression system. For producing the antigen, a nucleotide sequence encoding it may be expressed in a suitable host organism. Methods usable for producing and purifying a protein of interest have been described in the prior art and any such methods may be used. If a eukaryotic expression system is used, one or more introns may be inserted in the coding sequence of the antigen.
Particularly efficient expression methods are plant expression systems that are also known in the prior art. A possible way of achieving expression of a nucleotide sequence of interest encoding an antigen according to the invention in plants is the use of self-replicating (viral) replicons containing the nucleotide sequence encoding the antigen. Plant viral expression systems have been described in many publications, such as in WO2012019660, WO2008028661, WO2006003018, WO2005071090, WO2005049839, WO2006012906, WO02101006, WO2007137788 or WO02068664 and many more publications are cited in these documents. Various methods for introducing a nucleic acid molecule, such as a DNA molecule, into a plant or plant part for transient expression are known. Agrobacteria may be used for transfecting plants with the nucleic acid molecule (vector) or nucleic acid construct e.g. by agroinfiltration or spraying with agrobacterial suspensions. For references, see WO 2012019660, WO 2014187571, or WO 2013149726.
In embodiments wherein strong expression of the antigen is desired, a nucleic acid construct containing a nucleotide sequence encoding the antigen may encode a viral vector that can replicate in plant cells to form replicons of the viral vector. In order to be replicating, the viral vector and the replicons may contain an origin of replication that can be recognized by a nucleic acid polymerase present in plant cells, such as by the viral polymerase expressed from the replicon. In case of RNA viral vectors (referred to as “RNA replicons”), the replicons may be formed by transcription under the control of a promoter active in plant cells, from the DNA construct after the latter has been introduced into plant cell nuclei. In case of DNA replicons, the replicons may be formed by recombination between two recombination sites flanking the sequence encoding the viral replicon in the DNA construct, e.g. as described in WO00/17365 and WO 99/22003. If the replicon is encoded by the DNA construct, RNA replicons are preferred. Use of DNA and RNA viral vectors (DNA or RNA replicons) has been extensively described in the literature over the years. Some examples are the following patent publications: WO2008028661, WO2007137788, WO 2006003018, WO2005071090, WO2005049839, WO02097080, WO02088369, WO02068664. Examples of DNA viral vectors are those based on geminiviruses. For the present invention, viral vectors or replicons based on plant RNA viruses, notably those based on plus-sense single-stranded RNA viruses may be preferably used. Accordingly, the viral replicon may be a plus-sense single-stranded RNA replicon. Examples of such viral vectors are those based on tobacco mosaic virus (TMV) and potexvirus X (PVX). “Based on” means that the viral vector uses the replication system such as the replicase and/or other proteins involved in replication of these viruses. Potexvirus-based viral vectors and expression systems are described in EP2061890 or WO2008/028661.
The antigen may be expressed in a multi-cellular plant or a part thereof, notably a higher plant or parts thereof. Both monocot and dicot (crop) plants can be used. Common plants usable for expressing proteins include Nicotiana tabacum and Nicotiana benthamiana. However, many others can be employed as well.
Generally, the antigen may be expressed in the cytosol of cells of the plants or plant parts. In this case, no signal peptide directing the protein of interest into a particular compartment is added to the enzyme. Alternatively, the antigen or VP1 protein can be expressed in or targeted into chloroplasts of the plants or be secreted into the extracellular space; in these cases, an N-terminal pre-sequence, such as a plastid transit peptide or a signal sequence for targeting to the extracellular space, is added to the N-terminal or C-terminal end, preferably the C-terminal end, of the antigen as the protein of interest.
In the next step, plant material containing expressed antigen from a plant having expressed the antigen is harvested. Plant material may e.g. be leaves, roots, tubers, or seeds, or a crushed, milled or comminuted product of leaves, roots, tubers, or seeds. The antigen may then be extracted from the plant material using an aqueous buffer. This may include that the plant material is homogenized and insoluble material may be removed by centrifugation or filtration. Soluble components including the antigen will be extracted into the aqueous buffer to produce an antigen solution in the aqueous buffer. The aqueous buffer may contain an inorganic or organic acid or salts thereof and may have a pH as defined below for the aqueous solution as a composition of the invention. Further, the aqueous buffer may contain salt and/or a sulfhydryl compound. The antigen in the obtained antigen preparation may then be further purified using standard methods of protein purification, such as chromatographic methods.
Antigen being VP1 protein or derivative can form VLPs. These VLPs generally form spontaneously in the aqueous buffer used in extraction and purification. Formation of VLPs can be verified e.g. using electron microscopy.
If the immunogenic composition of the invention contains two or more NoV antigens, the two or more antigens may be expressed and purified separately and then mixed desired ratios when preparing the composition. It is also possible to co-express two or more antigens in the same plant cells or plants and purifying the together as a mixture.
Production of B Subunit of an AB5 Toxin
The B subunit of an AB5 toxin such as CTB or LTB may be obtained commercially as indicated above. Alternatively, they may be expressed and be purified from different production hosts including mammalian cells, insect cells and plants, similarly as described above for the NoV antigens. Expressed CTB and LTB generally assemble spontaneously to B5 pentamers. Section “Adjuvant used in the invention” above gives multiple references to AB5 toxins such as CTB and LTB.
Norovirus VLPs Purification from Plant Material
Norovirus VP1 VLPs have been purified as described below for GII.4 Aomori strain. The five weeks old Nicotiana benthamiana plants were vacuum-infiltrated (80-100 mbar for 3-4 minutes) with diluted Agrobacterium tumefaciens cultures carrying TMV-based assembled magnICON® vectors (Gleba et al., 2005, Vaccine, 23:17-18; Marillonnet et al., 2005, Nat. Biotechnol., 23:718-723; Gleba et al., Curr. Opin. Biotechnol., 2007, 18:134-141; Klimyuk, V., et al., 2014, Curr. Top. Microbiol. Immunol., 375:127-154) that allows to easily express viral VLPs in Nicotiana benthamiana plants (Zahin, M. et al., 2016, PLoS One, 11(8):e0160995). Plant material was harvested 6-14 days post infiltration. A harvesting time point 7-8 days post infiltration results in the highest expression level for GII.4 strain.
The green biomass was homogenized in the presence of two volumes neutral buffer (i.e. 15 g biomass and 30 mL 100 mM Tris, 5 mM Na2S2O5 pH 7.5). For clarification the plant homogenate was centrifuge 20 min. at 15.000×g. The resulting extract was further clarified by filtration using a Millipore® glass fiber filter (AP25).
High molecular weight components were sedimented by ultracentrifugation (150.000×g for 90 min.). The pellet was suspended in 1 mL of 20 mM histidine, 137 mM NaCl pH 6.0 and clarified by 15.000×g centrifugation for 20 minutes. The VLP containing supernatant was placed on the top of a 30% sucrose cushion (in 20 mM histidine, 137 mM NaCl pH 6.5). Ultracentrifugation was performed for 90 min. at 150.000×g. The resulting pellet was resuspended in 20 mM histidine, 137 mM NaCl pH 6.5. VLP formation was confirmed by SEC-HPLC with light scattering analysis.
Immunogenicity of Purified VP1 VLPs in Mice Using Intramuscular (IM) Route of Delivery
Study Animals
BALB/c Ola/Hsd female mice (Envigo, Netherlands) were shipped at ambient temperature to animal facility. Animals were acclimatized 1-2 weeks prior to immunizations and immunized at 7 weeks of age. Health monitoring data summary form was provided with the shipment of the mice. Animal health (clinical signs of illness) and welfare were monitored daily by the staff of the animal facility. All procedures were authorized and performed according to the guidelines of the Finnish National Animal Experiment Board.
Immunization Procedures
The mice were anesthetized with inhalation of isoflurane (Attane® vet) for the time of immunization and related procedures. Animals were weighted at the beginning of the study and marked with a group tattoo and individually by ear piercing. Fecal samples were collected at the beginning of the study (week (wk) 0) and at the day of termination (wk 5). Tail blood sample (5 mkl volume diluted 1:100 in PBS) was collected at wk 0 and wk 3 prior to immunization. Test article was administered IM in the caudal tight muscle (50 mkl volume) with 0.3 ml insulin syringe (29G×1/2″-0.33×12 mm).
Termination Procedures and Sample Collection
Animal weights were recorded at the time of termination. Fecal samples were collected, pooled and 10% suspensions were prepared before storing at −80° C. until use. The mice were terminated by anesthetizing mice with 1 mg/kg medetomidine (Dorbene® 1 mg/ml, Laboratorios Syva) and 75 mg/kg ketamine (Ketalar® 50 mg/ml, Pfizer) and collecting the terminal whole blood from axillary (armpit) area. Serum was separated of individually collected whole blood samples and stored at −20° C. until used. Spleens were collected and single cell suspensions were prepared. Group-wise pooled cells were aliquoted and stored frozen in liquid nitrogen until used.
We have determined the immunogenicity of the purified, plant-produced form of the norovirus (NoV) GI.4 Chiba and GII.4 Aomori virus-like particles (VLPs) and the effect of Cholera toxin B (CTB, Flarebio Biotech LLC, USA) adjuvant via intramuscular (IM) route. Additionally, as control, the adjuvant effect of aluminum hydroxide [Al(OH)3, alum] was evaluated. Completely purified recombinant NoV VLPs were administered two times IM to BALB/c mice at weeks 0 and 3 in PBS (pH 7.3). The dose of 1 mkg (microgram or μg) of each Nov VLP was given either alone or combined with 1 mkg of CTB adjuvant, or with 50 mkg alum adjuvant. Mice receiving 1 mkg CTB only were used as negative controls in addition to carrier only (PBS) immunized mice samples of previous study. All mice were terminated at study week 5. Humoral (antibody) immune responses were analyzed by ELISA-based assays and cell-mediated (T cells) immune responses by ELISPOT assays. NoV GI.4 Chiba and GII.4 Aomori VLPs used for immunizations were produced in plants and completely purified at Icon Genetics GmbH laboratory using standard purification technologies. Protein concentration and purity was determined and particles are examined under electron microscopy. VLPs stocks (ca. 1 mg/ml of VLPs in PBS—(10 mM NaH2PO4, 137 mM NaCl pH 6.5) were kept at +4° C. until the use. NoV VLP protein stocks were diluted in PBS pH 7.3 (Lonza BioWhittaker, Cat. BE17-516F) prior to the first immunization at desirable concentration and stored at +4° C. until use.
As a control antigen used in immunological assays, mock preparation magnICON/N. benthamiana, batch #T1070-pICH56122 SmSc1, with the date of manufacture (DOM) Apr. 20, 2016 was used. NoV GI.1, GI.3, GII.4-1999, GII.4 New Orleans (NO), GII.4 Sydney (SYD), and GII.12 VLPs used to detect NoV specific cross-reactive immune responses were produced in a baculovirus-insect cells expression system by VRC laboratory as previously described (Huhti et al. 2010). GII.17 VLPs used for cross-reactivity analysis were produced in plants and purified by ICON Genetics GmbH.
Adjuvants
Cholera Toxin B (CTB) subunit from recombinant Vibrio cholerae serotype O1 was manufactured by Flarebio (batch #03285; Seq ID No. 83 shown in Table 2) and was provided as a lyophilized protein. Reconstituted by dissolving into 1 mg/ml with sterile Aqua Sterilisata (Fresenius Kabi) according to manufacturer's instructions and stored at −20° C. in aliquots prior to use. This adjuvant is referred to as “rCTB” in these Examples. It was added to vaccine antigen preparations 1 day prior to immunizations and mixtures stored overnight at +4° C.
Aluminum hydroxide gel adjuvant, (Alhydrogel® adjuvant 2%, InvivoGen, #vac-alu-250) was provided as a ready-to-use gel suspension. Alum was added to vaccine antigen preparations 1 day prior to immunizations and mixtures stored overnight at +4° C.
Study Assays
Humoral Immune Response Assays
Titers of antigen-specific (Nov GI.4 Chiba, GII.4 Aomori) IgG, IgG1 and IgG2a in serum were tested by enzyme-linked immunosorbent assay (ELISA) as previously described (Blazevic et al., 2011, Vaccine, 29:81268133; Tamminen et al., 2012, Immunology, 135:89-99). The serum IgG mock responses (antimagnICON/N. benthamiana) were tested by ELISA at 1:200 dilution.
Kinetics were analyzed from tail blood samples collected from individual mice at week (wk) 0 and 3. The cross-reactivity of serum IgG antibodies to NoV VLP genotypes not included in the administered antigen preparation was determined by ELISA. Pooled fecal suspensions were analysed for homotypic NoV IgG antibodies.
Pig gastric mucin (PGM)-based homologous blocking assay (Lindesmith et al., 2012, J. Virol., 86:873-883) and human type A saliva-based cross-blocking assay was used to determine the ability of immune sera to block the binding of NoV VLPs to the putative NoV receptors, human histo-blood group antigens (HBGA) as previously described (Uusi-Kerttula et al., 2014, Microbes Infect., 16:472-480).
The results of experiments for immune responses against IM delivered GI.4 and GII.4 antigens are shown in the
Immunogenicity of Purified VP1 VLPs in Mice Using Intradermal (ID) Route of Delivery
The mice, antigens formulations and measurements for testing immunogenicity of intradermally delivered vaccine were prepared and carried out as described in Example 2. The results of experiments for immune responses against ID delivered GI.4 and GII.4 antigens are shown in the
Immunogenicity of Purified VP1 VLPs in Mice Using Intranasal (IN) Route of Delivery
The mice, antigens formulations and measurements for testing immunogenicity of intranasally delivered vaccine were prepared and carried out as described in Example 2. The results of experiments for immune responses against IN delivered GI.4 and GII.4 antigens are shown in the
Immunogenicity of Purified VP1 VLPs in Mice Using Subcutaneous (SC) Route of Delivery
The mice, antigens formulations and measurements for testing immunogenicity of subcutaneously delivered vaccine were prepared and carried out as described in Example 2. The results of experiments for immune responses against SC delivered GI.4 and GII.4 antigens are shown in the
Production of Recombinant Exotoxin B Subunits in Plants
B subunits of bacterial type I exotoxins (Cholera toxin and E. coli heat-labile toxin) have been purified as described below. Five weeks old Nicotiana benthamiana plants were vacuum-infiltrated (80-100 mbar for 3-4 minutes) with diluted Agrobacterium tumefaciens cultures carrying TMV-based assembled magnICON® vectors (Gleba et al., 2005, Vaccine, 23:17-18; Marillonnet et al., 2005, Nat. Biotechnol., 23:718-723; Gleba et al., Curr. Opin. Biotechnol., 2007, 18:134-141; Klimyuk, V., et al., 2014, Curr. Top. Microbiol. Immunol., 375:127-154) which allow easy expression of B subunits of bacterial type I exotoxins in Nicotiana benthamiana plants (Hamorsky et al., 2013, PLoS Negl Trop Dis. 7(3):e2046; Hamorsky et al., 2015, Sci Rep. 5:8003). Plant material was harvested 6-14 days post infiltration. The green biomass was homogenized in the presence of two volumes neutral buffer (i.e. 15 g biomass and 30 mL 100 mM Tris, 60 mM Ascorbic acid, 0.5M NaCl pH 7.5). For clarification the plant homogenate was centrifuge 20 min. at 15.000×g. The resulting extract was further clarified by filtration using a Millipore® glass fiber filter (AP25). The recombinant exotoxin B subunits were purified by affinity chromatography on a lyso-GM1 ganglioside-Spherosil® column using the procedure described by J. L. Tayot et al, 1981, Eur J Biochem 113:249-258. Formation of subunit B pentamers was confirmed by size exclusion chromatography.
Use of Recombinant Exotoxin B Subunits in Vaccine Formulations
CTB or LTB of any origin, preferably recombinant CTB or LTB produced in plants, can be used for the immunogenic and vaccine formulation of the invention. Depending on the dose of exotoxin B subunit and norovirus VLPs, LTB or CTB fulfill the function of an adjuvant (please refer to
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The content of European patent applications No. 18 157 031.8 and No. 18 215 676.0, filed on Feb. 15, 2018 and Dec. 21, 2018, respectively, is incorporated herein including entire descriptions, claims and figures.
| Number | Date | Country | Kind |
|---|---|---|---|
| 18157031 | Feb 2018 | EP | regional |
| 18215676 | Dec 2018 | EP | regional |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2019/053699 | 2/14/2019 | WO |
| Publishing Document | Publishing Date | Country | Kind |
|---|---|---|---|
| WO2019/158653 | 8/22/2019 | WO | A |
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| S58-500998 | Jun 1983 | JP |
| 2004-538048 | Dec 2004 | JP |
| 2010-539192 | Dec 2010 | JP |
| 2016-534070 | Nov 2016 | JP |
| 2017-513956 | Jun 2017 | JP |
| 2013009849 | Jan 2013 | WO |
| Entry |
|---|
| International Search Report in PCT/EP2019/053699 dated Apr. 28, 2019. |
| Written Opinion of the International Searching Authority in PCT/EP2019/053699 dated Apr. 28, 2019. |
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| Number | Date | Country | |
|---|---|---|---|
| 20210000941 A1 | Jan 2021 | US |
