Patent Application
20230201336
The present invention discloses influenza virus-like particles (VLPs) and vaccines comprising such VLPs.
A viral infection or vaccination is first recognized by the host's innate immune system. Innate immune cells identify the virus or vaccine as foreign, process it in order to present it to the adaptive immune system and thereby activate it. Depending on the nature of the vaccine, the protection initiated by the adaptive immune system is based more on antibodies (humoral immune response) or on cells that kill newly infected cells quickly and efficiently, making it impossible for the virus to spread (cellular immune response).
Current vaccination strategies against influenza A virus (IAV) are based on the administration of combinations of 3 to 4 inactivated IAV strains or attenuated live viruses (LAIV). Vaccinations with inactivated IAV strains primarily elicit a humoral immune response that only provides protection for about 6 months. Furthermore, this vaccination is only effective against those strains that were used in the manufacture of the vaccine. Moreover, there are concerns over attenuated vaccines about biosafety.
Patients who have survived an IAV infection have broader and more ongoing protection against a new IAV infection, compared to merely vaccinated patients. This protection is provided by the cellular immune response, which is not caused by vaccination with inactivated strains.
Hartmann et. al. (Nat. Commun. 8 (2017), 1916-1918) discovered that infection with the influenza A virus (IAV) in human dendritic cells (DC) causes inflammatory cell death. The host sensor protein ZBP1/DAI recognizes the viral RNA when it enters the cell and triggers the release of danger signals in the microenvironment. This response induced by viral RNA leads to local inflammation and a more efficient, long-lasting immune response. This suggests that the cellular immune response is activated by the detection of viral RNA newly expressed in the host cell. This in turn means that vaccination with newly expressing viral RNA is necessary for long-term and broader protection (
Since vaccines based on attenuated viruses have a viral RNA expressing polymerase that is not effective at body temperature, vaccination in the host does not express the necessary new viral RNA, which triggers the microinflammation required for cellular immunity. For these reasons, the current vaccine strategies have no lasting immune protection against IAV.
Influenza virus causes 250,000-500,000 deaths worldwide annually; a global pandemic could kill millions. Vaccination is the most cost-effective public health measure to prevent disease and mortality caused by influenza virus infection.
The influenza virion is an enveloped virus whose lipid bilayer comes from the plasma membrane of a host cell. Two different types of glycoprotein spikes are embedded in the shell. Approximately 80 percent of the spikes are hemagglutinin (HA), a trimeric protein that acts when the virus attaches to a host cell. The remaining approximately 20 percent of the glycoprotein spikes consist of neuraminidase (NA), which is believed to primarily facilitate the release of newly produced virus particles from the host cell. There is a matrix protein lining on the inside of the envelope, which surrounds an influenza virion. Inside the envelope is the influenza genome, which is divided into eight single-stranded RNA segments. The RNA is packaged with nucleoprotein (NP) forming a helical ribonucleoprotein complex, containing three polymerase peptides for each RNA segment. Most segments encode a single protein, but some describe several, such as the M segment, which encodes the matrix protein M1 and the ion channel protein M2 (
Influenza VLPs are potential candidates for inclusion in immunogenic compositions. VLPs closely resemble mature virions, but they do not contain viral genomic material (see e.g. most recently: WO 2020/00101 A1 ([0017], [00254]); WO 2020/014656 A1 (p. 23)). In fact, VLPs are—per definition in the prior art—empty virus envelopes. Therefore, VLPs are non-replicative in nature, which makes them safe for administration as a vaccine. In addition, VLPs can be engineered to express viral glycoproteins on the surface of the VLP, which is their most native physiological configuration. Moreover, since VLPs resemble intact virions and are multivalent particulate structures, VLPs may be more effective in inducing neutralizing antibodies to the glycoprotein than soluble envelope protein antigens.
US 2017/058265 A1 discloses the generation of influenza viruses from virus-like particles by using sets of isolated host cells with virus segments. Watanabe et al. (J. Virol. 76(2002): 767-773) report immunogenicity and protective efficacy of replication-incompetent influenza VLPs. U.S. Pat. No. 9,150,620 B2 describes a vaccine against multitypes of avian influenza viruses with specifically mutated influenza HA protein. Liu et al. (Antiviral. Res. 133 (2016): 110-118) report on multi-subtype influenza VLPs incorporated with flagellin and GM-CSF for vaccine design. In the US 2015/0273048 A1, a universal influenza vaccine based on heterologous multiple matrix protein 2 extracellular domain (M2e) proteins.
It is an object of the present invention to provide effective and safer vaccination, especially vaccination against the influenza virus.
This object of the present invention is solved by the RNA expressing VLPs (RNA-VLPs) according to the present invention.
Therefore, the present invention provides influenza virus-like particles (VLPs), wherein the VLPs comprise:
hemagglutinin (HA) protein and neuraminidase (NA) protein on the surface of the VLPs,
a nucleoprotein (NP) ribonucleoprotein complex,
wherein the VLPs do not contain a ribonucleoprotein complex of at least one of PB1, PB2, NS1 and NS2.
The present invention further provides a vaccine comprising influenza virus-like particles (VLPs), and a pharmaceutically acceptable excipient, wherein the VLPs comprise:
hemagglutinin (HA) protein and neuraminidase (NA) protein on the surface of the VLPs,
a nucleoprotein (NP) ribonucleoprotein complex,
wherein the VLPs do not contain a ribonucleoprotein complex of at least one of PB1, PB2, and NS2.
The present invention provides RNA-VLPs which are used in a vaccine that appears like a real viral infection to the immune system but cannot multiply. For this purpose, virus-like particles (VLPs) that are externally identical to functional virions were used. Inside the VLP at least one (i.e. NP), preferably two (i.e. NP and M), functional IAV-ribonucleoprotein complexes (RNP) are inserted, which trigger inflammatory cell death in the host cells like a real virus causes in the host cell by viral RNA expression. In short: after vaccination of the patient, these RNA-VLPs, due to their similarity, enter the cell on the same route as a functional IAV virion and discharge their two RNPs into the cell nucleus. After entry, the viral polymerases which are part of the RNP begin to copy viral RNA, which is then the trigger for the above-described inflammatory cell death (necroptosis). Necroptosis causes the host cell to burst, which has several advantages for the immune system: The internal ingredients such as nuclear DNA and proteins are a danger signal that attracts and activates uninvolved cells of the innate immune system; viral proteins and RNA are rendered non-functional by the cell death of infected cells; those nonfunctional viral parts now serve as pathogen-associated molecular patterns (PAMPs), which are taken up by the now activated cells of the innate immune system and, after processing, are presented to the cells of the adaptive immune system. The activation of the innate immune system by the necroptosis of the infected cells induced by the RNA-VLPs is similar to the immune response when infected with a real dangerous IAV virus and is responsible for the activation of cell-mediated immune response. Vaccinations with classic vaccines do not activate necroptosis due to the lack of RNA expression and therefore induce mainly a humoral immune response. Furthermore, RNA-VLPs are biologically safer than pseudotyped vaccines, which are in short IAV viruses with a non-functional NA protein (Powell et al., J. Virol. 86 (2012), 13397-13406), because they do not replicate segments expressing viral RNA polymerases.
Accordingly, the VLPs according to the present invention trigger inflammatory cell death (necroptosis) upon entry into a cell but do not trigger apoptosis of the cell.
The role of programmed cell death in influenza virus propagation via caspase-dependent apoptosis has been most extensively examined (see e.g. Harold et al., J. Leukoc. Biol. 92 (2012), 75-82 for review). On the other hand, programmed necrosis (or necroptosis) is a more immunogenic host cell death mechanism (see e.g. Sridharan et al., Trends Microbiol. 22 (2014), 199-207 for review). Unlike apoptosis, necroptosis results in the release of danger-associated molecular patterns (DAMPs), and thus is associated with inflammation and immune cell activation. Necroptosis is receptor-interacting protein kinase (RIPK)- and mixed lineage kinase domain-like pseudokinase (MLKL)-dependent. Depending on the host/pathogen context, necroptosis can either be involved in host response to infection or be exploited by the pathogen for further dissemination.
The RNA-VLPs according to the present invention are an improvement of the existing VLP technology (disclosed e.g. Kang et al., PloS one 14 (2019), e0216871; 10.1371/journal.pone.0216871; Haynes, Exp. Rev. Vacc. 8 (2009), 435-445; Schotsaert et al., Sci. Rep. 6 (2016), 24402; 10.1038/srep24402; Mohan, T. et al., Sci. Rep. 7 (2017), 40226; 10.1038/srep40226), since RNA-VLPs for the immune system simulate infection with a living virus through RNA expression.
The RNA-VLPs according to the present invention can be produced using “reverse genetics” technology (Perez et al., Meth. Mol. Biol. 1602 (2017), 251-273; 10.1007/978-1-4939-6964-7_16). For this purpose, the individual influenza segments are isolated from a field virus, transcribed from RNA into DNA and cloned into DNA plasmids. The plasmids containing the DNA of each IAV segment are then transfected into a cell line. In the transfected cells the plasmids produce either viral copy RNA, and/or viral messenger RNA for the production of viral proteins. The placement of promoters on the plasmids determines whether viral RNA, viral proteins or both are expressed after transfection of the plasmids into a cell culture. This technology has long been used to produce chimeric viruses.
In general, VLPs are known in the present field of technology as particles made up of one or more viral structural proteins, but lacking the viral genome i.a. encoding these viral structural proteins of the VLP. Because VLPs lack a viral genome, they are not able to multiply in cells to generate infectious particles and yield safer and potentially more-economical vaccines and vaccine products. In addition, VLPs can often be produced by heterologous expression and can be easily purified. Most VLPs disclosed in the prior art comprise at least a viral core protein that drives budding and release of particles from a host cell. Influenza VLPs can be produced by transfection of host cells with plasmids encoding the HA, NA and M proteins. After incubation of the transfected cells for an appropriate time to allow for protein expression (such as for approximately 72 hours), VLPs can be isolated from cell culture supernatants. By way of example, a protocol for purifying or isolating influenza VLPs from cell supernatants involves low speed centrifugation (to remove cell debris), vacuum filtration and ultracentrifugation of the VLPs through 20% glycerol. A virus-like particle may also include a subviral particle (SVP), which is typically smaller in size than a virus and constitutes a particle without a virus capsid or genome.
The present VLPs—although containing certain viral nucleic acids—are clearly different from rescued viruses known in the art (e.g. Fodor et al., J. Virol. 73 (1999), 9679-9682; Hoffman et al., Arch. Virol. 146 (2001), 2275-2289; WO 01/04333 A1; WO 2007/016598 A2) due to the lack of the ability to be reproduced in a cell to obtain infectious viral particles. US 2017/058265 A1 uses various VLP constructs and cells, yet without suggesting them to be used for vaccines; this document aims at replication competent fully infectious viruses to be used in various vaccine technologies listed (yet without referring to use these VLPs in a vaccination context). It is also interesting to note that inclusion of NS1 could make such constructs immune antagonistic; this is why it is preferred that the VLPs according to the present invention do not contain a ribonucleoprotein complex of NS1. Watanabe et al., 2002, describe the delta NS1 recombinant influenza virus (which is not a VLP) which can propagate in IFN deficient cells (cells that have a diminished intrinsic immune response). It may be remarked that the VLPs according to the present invention—in contrast to all these constructs—cannot propagate in any cell line as the genetic information for the (for virus replication absolutely necessary) RNA dependent RNA polymerases are missing.
Preferably, the minimum requirement for the VLPs in the vaccine according to the present invention are: only one or two RNPs inside; in any case PA, PB1, PB2 or NS1 could never be used as the template for the RNA in the RNP; this ensures that the VLP is unable to replicate (PA, PB1, PB2) or exert any immune antagonistic function. The VLPs according to the present invention are free of a nucleic acid set-up which would enable the creation of infectious particles in a host cell. This is why—by definition—the VLPs according to the present invention lack at least one of the ribonucleoprotein complexes which are indispensable for viral replication, i.e. PB1, PB2, and NS2 (NS1 has been shown to be dispensable for viral replication in substrates deficient in the IFN pathway (Garcia-Sastre et al., Virol. 252 (1998), 324-330); the characterization of the biological and molecular properties of a recombinant influenza delNS1 virus suggested that NS1 is a virally encoded inhibitor of the IFN-mediated antiviral responses). Preferably, the VLPs according to the present invention lack even more than just one ribonucleoprotein complex of PB1, PB2, and NS2, e.g. two, or all three; it is also preferred that the VLPs according to the present invention lack an NS1 ribonucleoprotein complex. According to the most preferred embodiment of the present invention, the VLPs according to the present invention only contain an NP ribonucleoprotein complex, preferably with an M ribonucleoprotein complex, as the only ribonucleoprotein complex.
In fact, the VLPs according to the present invention are—due to the mandatory lack of indispensable genetic material for reproducibility within a host cell (i.e. PB1, PB2, and/or NS2)—non-infectious, since they are only able to bind to and enter a cell but not able to be propagated by any host cell to produce infectious particles which then are able to enter further cells.
In contrast to VLPs in the prior art, the VLPs according to the present invention contain viral genetic material (a NP ribonucleoprotein complex; preferably also an M ribonucleoprotein complex) and may therefore also be referred to as “RNA-VLPs” but are—as the prior art VLPs—non-replicating, non-infectious viral capsid structures of influenza. Accordingly, the VLPs according to the present invention are able to enter a cell but no reproduction of the virus/VLP in the cell occurs. Accordingly, it is clear that as used herein e.g. the term “a nucleoprotein (NP) ribonucleoprotein complex” means the ribonucleoprotein complex (RNP) encoding NP (i.e. an RNP with a viral RNA (vRNA) encoding NP; see also e.g.
As a minimum the IAV surface proteins hemagglutinin (HA) and neuraminidase (NA) are required, for the construction of the VLPs envelope. The M protein is added, for greater stability and also to make the VLP externally identical to a true virus. The RNP of the NP segment will serve as a source for the viral RNA. NP has the advantages that it is expressed in relatively high numbers early after infection and it also has no known immune antagonistic function. The addition of the M segment as an RNP enables RNA-VLPs to be used as vectors in vaccination against pathogens other than influenza, since foreign sequences of other pathogens can also be added to the M segment without severely restricting its functionality (
Accordingly, the VLPs according to the present invention preferably exhibit hemagglutinin activity and/or neuraminidase activity. As used herein, the term “hemagglutinin activity” refers to the ability of HA-containing VLPs, or portions thereof to bind and agglutinate red blood cells (erythrocytes). As used herein, the term “neuraminidase activity” refers to the enzymatic activity of NA-containing VLPs, or portions thereof to cleave sialic acid residues from substrates including proteins such as fetuin.
Influenza virus hemagglutinin HA is a viral surface glycoprotein that generally comprises approximately 560 amino acids (e.g., 566 amino acids) and represents 25% of the total virus protein. HA is a protein antigen that is highly useful as an immunogen and is responsible for adhesion of the viral particle to, and its penetration into, a host cell, particularly, in the respiratory epithelium, in the early stages of infection (or entry into a cell (for the VLPs according to the present invention)). Eighteen different HA subtypes have been identified in influenza viruses (H1-H18). Influenza virus neuraminidase (NA) is a second membrane glycoprotein of influenza viruses. The presence of viral NA has been shown to be important for generating a multi-faceted protective immune response against an infecting virus. For most influenza A viruses, NA is 413 amino acid in length, and is encoded by a gene of 1413 nucleotides. Nine different NA subtypes have been identified in influenza viruses (N1, N2, N3, N4, N5, N6, N7, N8 and N9), all of which have been found among wild birds. NA is involved in the destruction of the cellular receptor for the viral HA by cleaving terminal neuraminic acid (also called sialic acid) residues from carbohydrate moieties on the surfaces of infected cells. NA also cleaves sialic acid residues from viral proteins, preventing aggregation of viruses. Using this mechanism, it is hypothesized that NA facilitates the release of viral progeny by preventing newly formed viral particles from accumulating along the cell membrane, as well as by promoting transportation of the virus through the mucus present on the mucosal surface. NA is an important antigenic determinant that is subject to antigenic variation.
Sequences of HA and NA proteins to be used according to the present invention are e.g. available from the Influenza Research Database (IRD). The IRD contains avian and non-human mammalian influenza surveillance data, human clinical data associated with virus extracts, phenotypic characteristics of viruses isolated from extracts and all genomic and proteomic data available in public repositories for influenza viruses. IRD links host surveillance and clinical data to sequence and phenotypic data for all well characterized influenza virus strains as well as data obtained from public data sources for well-characterized virus strains will be supplemented with IRD generated data. As of 28 Mar. 2020, the IRD contains 95,032 entries for HA proteins and 82,794 entries for NA proteins.
According to a preferred embodiment, the HA protein in the VLPs according to the present invention is selected from the group of HA proteins disclosed in the IRD, preferably a seasonal, non-pandemic HA. In the IRD, this can be selected by e.g. excluding 2009 pH1N1 sequences from the “Glade Classification” in a search for HA proteins.
Preferably, the NA protein in the VLPs according to the present invention is selected from the group of NA proteins disclosed in the IRD, preferably a seasonal, non-pandemic NA.
Of course, also modified/recombinant versions of HA and NA proteins, e.g. as disclosed in WO 2020/000101 A1).
Influenza A virus RNA segment 5 encodes NP (a polypeptide of 498 amino acids in length), which is rich in arginine, glycine and serine residues and has a net positive charge at neutral pH. The majority of the polypeptide has a preponderance of basic amino acids and an overall predicted pi of 9.3, but the C-terminal 30 residues of NP are, with a pi of 3.7, markedly acidic. In influenza B and C viruses, the length of the homologous NP polypeptide is 560 and 565 residues, respectively. Alignment of the predicted amino acid sequences of the NP genes of the three influenza virus types reveals significant similarity among the three proteins, with the type A and B NPs showing the highest degree of conservation. Phylogenetic analysis of virus strains isolated from different hosts reveals that the NP gene is relatively well conserved.
The seventh RNA segment of influenza viruses (the M gene) encodes both, the M1 and the M2 protein. M1 is a matrix protein that lies just beneath the viral envelope in the form of dimers and interacts with viral ribonucleoprotein (vRNP) complex, forming a bridge between the inner core components and the membrane proteins. vRNPs harbour the determinants for host range. M1 contacts with both viral RNA and NP, promoting the formation of RNP complexes and causing the dissociation of RNP from the nuclear matrix. M1 plays a vital role in assembly by recruiting the viral components to the site of assembly and essential role in the budding process including formation of viral particles. The M1 protein forms a layer under the patches of host cell membrane that are rich with the viral hemagglutinin, neuraminidase and M2 transmembrane proteins, and facilitates budding of the mature viruses. M1 consists of two domains connected by a linker sequence. The N-terminal domain has a multi-helical structure that can be divided into two subdomains. The C-terminal domain also contains alpha-helical structure. M2 is a membrane protein, which is inserted into the viral envelope and projects from the surface of the virus as tetramers. The extracellular domain of M2 is recognized by hosts' immune system. Transmembrane domain of M2 has ion channel activity, which is involved in the uncoating process of the virus in the cell. The M2 protein is a proton-selective viroporin, integral in the viral envelope of the influenza A virus. The channel itself is a homotetramer (consists of four identical M2 units), where the units are helices stabilized by two disulfide bonds, and is activated by low pH. Proton conductance by the M2 protein in influenza A is essential for viral replication. The M gene therefore encodes both matrix and membrane proteins, and has multiple functions (see e.g. Furuse et al., Virol. J. 6 (2009), 67; doi:10.1186/1743-422X-6-67).
A preferred embodiment of the present VLPs further comprises a matrix protein (M) ribonucleoprotein complex.
According to a preferred embodiment, VLPs according to the present invention comprise:
Preferably, the M ribonucleoprotein complex in the VLPs according to the present invention contains nucleic acids selected from the group of M genes disclosed in the IRD. Moreover, the M protein encoding nucleic acid sequences in the VLPs according to the present invention may be provided as encoding a modified protein, for example a fusion protein comprising or consisting of (an) influenza M protein(s) and an antigen from a non-influenza virus pathogen. According to this preferred embodiment, the VLPs according to the present invention further comprise a genetically modified M ribonucleoprotein complex, preferably wherein the M ribonucleoprotein complex contains viral RNA encoding an antigen of a non-influenza virus pathogen, especially wherein the M ribonucleoprotein complex contains viral RNA encoding a fusion protein containing an M protein and a protein or antigenic protein fragment of a non-influenza virus pathogen. Accordingly, the terms “M protein” or “M ribonucleoprotein complex”, as used herein, include both embodiments of the present invention in this respect, the (wild-type, native, influenza) M protein or the (wild-type, native, influenza) M ribonucleoprotein complex (“influenza M embodiment”) and genetically engineered forms thereof, e.g. a fusion protein of (an) influenza M protein(s) and an antigen from a non-influenza virus pathogen and the corresponding ribonucleoprotein complex with vRNA encoding this fusion protein (influenza/non-influenza fusion embodiment”).
For example, the non-influenza virus pathogen can be a non-influenza virus, a gram-positive or gram-negative bacterium, a fungus, a protozoan, or a prion, preferably a non-influenza RNA virus, a DNA virus, or a retrovirus, especially wherein the virus is SARS-COV-1, SARS-COV-2, or Dengue virus.
Preferably, the M ribonucleoprotein complex comprises an RNA encoding a fusion protein comprising the (influenza) M protein and a pathogen antigen or an immunogenic portion thereof. Preferably, the pathogen is a viral, bacterial, fungal or protozoan pathogen. In this context particularly preferred are antigens from the pathogens Acinetobacter baumannii, Anaplasma genus, Anaplasma phagocytophilum, Ancylostoma braziliense, Ancylostoma duodenale, Arcanobacterium haemolyticum, Ascaris lumbricoides, Aspergillus genus, Astroviridae, Babesia genus, Bacillus anthracis, Bacillus cereus, Bartonella henselae, BK virus, Blastocystis hominis, Blastomyces dermatitidis, Bordetella pertussis, Borrelia burgdorferi, Borrelia genus, Borrelia spp, Brucella genus, Brugia malayi, Bunyaviridae family, Burkholderia cepacia and other Burkholderia species, Burkholderia mallei, Burkholderia pseudomallei, Caliciviridae family, Campylobacter genus, Candida albicans, Candida spp, Chlamydia trachomatis, Chlamydophila pneumoniae, Chlamydophila psittaci, CJD prion, Clonorchis sinensis, Clostridium botulinum, Clostridium difficile, Clostridium perfringens, Clostridium perfringens, Clostridium spp, Clostridium tetani, Coccidioides spp, coronaviruses, Corynebacterium diphtheriae, Coxiella burnetii, Crimean-Congo hemorrhagic fever virus, Cryptococcus neoformans, Cryptosporidium genus, Cytomegalovirus, Dengue viruses (DEN1, DEN-2, DEN-3 and DEN-4), Dientamoeba fragilis, Ebolavirus (EBOV), Echinococcus genus, Ehrlichia chaffeensis, Ehrlichia ewingii, Ehrlichia genus, Entamoeba histolytica, Enterococcus genus, Enterovirus genus, Enteroviruses, mainly Coxsackie A virus and Enterovirus 71 (EV71), Epidermophyton spp, Epstein-Barr Virus (EBV), Escherichia coli O157:H7, 0111 and 0104:H4, Fasciola hepatica and Fasciola gigantica, FFI prion, Filarioidea superfamily, Flaviviruses, Francisella tularensis, Fusobacterium genus, Geotrichum candidum, Giardia intestinalis, Gnathostoma spp, GSS prion, Guanarito virus, Haemophilus ducreyi, Haemophilus influenza, Helicobacter pylori, Henipavirus (Hendra virus Nipah virus), Hepatitis A Virus, Hepatitis B Virus, Hepatitis C Virus, Hepatitis D Virus, Hepatitis E Virus, Herpes simplex virus 1 and 2 (HSV-1 and HSV-2), Histoplasma capsulatum, HIV (Human immunodeficiency virus), Hortaea werneckii, Human bocavirus (HBoV), Human herpesvirus 6 (HHV-6) and Human herpesvirus 7 (HHV-7), Human metapneumovirus (hMPV), Human papillomavirus (HPV), Human parainfluenza viruses (HPIV), Japanese encephalitis virus, JC virus, Junin virus, Kingella kingae, Klebsiella granulomatis, Kuru prion, Lassa virus, Legionella pneumophila, Leishmania genus, Leptospira genus, Listeria monocytogenes, Lymphocytic choriomeningitis virus (LCMV), Machupo virus, Malassezia spp, Marburg virus, Measles virus, Metagonimus yokagawai, Microsporidia phylum, Molluscum contagiosum virus (MCV), Mumps virus, Mycobacterium leprae and Mycobacterium lepromatosis, Mycobacterium tuberculosis, Mycobacterium ulcerans, Mycoplasma pneumoniae, Naegleria fowleri, Necator americanus, Neisseria gonorrhoeae, Neisseria meningitidis, Nocardia asteroides, Nocardia spp, Onchocerca volvulus, Orientia tsutsugamushi, Orthomyxoviridae family, Paracoccidioides brasiliensis, Paragonimus spp, Paragonimus westermani, Parvovirus B19, Pasteurella genus, Plasmodium genus, Pneumocystis jirovecii, Poliovirus, Rabies virus, Respiratory syncytial virus (RSV), Rhinovirus, rhinoviruses, Rickettsia akari, Rickettsia genus, Rickettsia prowazekii, Rickettsia rickettsii, Rickettsia typhi, Rift Valley fever virus, Rotavirus, Rubella virus, Sabia virus, Salmonella genus, Sarcoptes scabiei, SARS-COV-1, SARS-COV-2, Schistosoma genus, Shigella genus, Sin Nombre virus, Hantavirus, Sporothrix schenckii, Staphylococcus genus, Staphylococcus genus, Streptococcus agalactiae, Streptococcus pneumoniae, Streptococcus pyogenes, Strongyloides stercoralis, Taenia genus, Taenia solium, Tick-borne encephalitis virus (TBEV), Toxocara canis or Toxocara cati, Toxoplasma gondii, Treponema pallidum, Trichinella spiralis, Trichomonas vaginalis, Trichophyton spp, Trichuris trichiura, Trypanosoma brucei, Trypanosoma cruzi, Ureaplasma urealyticum, Varicella zoster virus (VZV), Variola major or Variola minor, vCJD prion, Venezuelan equine encephalitis virus, Vibrio cholerae, West Nile virus, Western equine encephalitis virus, Wuchereria bancrofti, Yellow fever virus, Yersinia enterocolitica, Yersinia pestis, and Yersinia pseudotuberculosis.
Suitable examples of such antigens are disclosed e.g. in WO 2015/149944 A2.
Since microinflammations elicited by the VLPs according to the present invention are also suitable to overcome the immune abating environment of tumours, the VLP technology according to the present invention can also a be used to elicit an immune response against oncogenes or malignant tissue proteins (for example, tumour antigens located at the surface of tumour cells and being specific for the tumour cells (i.e. not present on benign cells)).
According to another aspect, the present invention also refers to a vaccine comprising the VLPs according to the present invention and a pharmaceutically acceptable excipient.
Preferably, the VLPs according to the present invention are provided as a pharmaceutical preparation suitable to be applied to human individuals. Therefore, the VLPs according to the present invention may be combined with pharmaceutically acceptable excipients which are the conventional carriers (vehicles) and excipients that are physiologically and pharmaceutically acceptable for use in human subjects. Such pharmaceutically acceptable vehicles are known to the skilled practitioner in the pertinent art and can be readily found, e.g. in Remington's Pharmaceutical Sciences, by E. W. Martin, Mack Publishing Co., Easton, Pa., in its updated/current editions, which describes compositions and formulations suitable for pharmaceutical delivery of one or more therapeutic compositions, such as one or more influenza vaccines, and additional pharmaceutical agents. In general, the nature of a pharmaceutically acceptable carrier depends on the particular mode of administration being employed. For instance, parenteral formulations usually comprise injectable fluids/liquids that include pharmaceutically and physiologically acceptable fluids such as water, physiological saline, balanced salt solutions, aqueous dextrose, glycerol or the like as a vehicle. For solid compositions (for example, powder, pill, tablet, or capsule forms), conventional non-toxic solid carriers may include, for example, pharmaceutical grades of mannitol, lactose, starch, or magnesium stearate, which typically stabilize and/or increase the half-life of a composition or drug. In addition to biologically-neutral carriers, pharmaceutical compositions to be administered can contain minor amounts of non-toxic auxiliary substances, such as wetting or emulsifying agents, preservatives, and pH buffering agents and the like, for example sodium acetate or sorbitan monolaurate.
Suitable pharmaceutical compositions of the VLPs according to the present invention for parenteral administration include, without limitation, sterile aqueous or non-aqueous solutions, suspensions, and emulsions. Nonlimiting examples of non-aqueous solvents include propylene glycol, polyethylene glycol, vegetable oils, such as olive oil and canola oil, and injectable organic esters, such as ethyl oleate. Aqueous carriers include water, alcoholic/aqueous solutions, emulsions or suspensions, including saline and buffered media. Parenteral vehicles include, for example, sodium chloride solution, Ringer's dextrose, dextrose and sodium chloride, lactated Ringer's, or fixed oils. Intravenous vehicles include, for example, fluid and nutrient replenishers, electrolyte replenishers (such as those based on Ringer's dextrose), and the like. Preservatives and other additives may also be present in such compositions and preparations, such as, for example, antimicrobials, antioxidants, chelating agents, colorants, stabilizers, inert gases and the like.
Some of the compositions may potentially be administered as a pharmaceutically acceptable acid- or base-addition salt, formed by reaction with inorganic acids, such as hydrochloric acid, hydrobromic acid, perchloric acid, nitric acid, thiocyanic acid, sulfuric acid, and phosphoric acid, and organic acids, such as formic acid, acetic acid, propionic acid, glycolic acid, lactic acid, pyruvic acid, oxalic acid, malonic acid, succinic acid, maleic acid, and fumaric acid, or by reaction with an inorganic base such as sodium hydroxide, ammonium hydroxide, potassium hydroxide, and organic bases such as mono-, di-, tri-alkyl and aryl amines and substituted ethanolamines.
Provided herein are pharmaceutical compositions which include a therapeutically effective amount of the VLPs according to the present invention, alone, or in combination with a pharmaceutically acceptable carrier. A person skilled in the art is well aware of suitable pharmaceutical formulations suitable for the present purposes, e.g. there are many appropriate examples and suggestions for the pharmaceutical formulations of influenza vaccines, which are also applicable for the VLPs according to the present invention. Pharmaceutically acceptable carriers include, but are not limited to, saline, buffered saline, dextrose, water, glycerol, ethanol, and combinations thereof. The carrier and composition can be sterile, and the formulation should suit the mode of administration. The composition can also contain minor amounts of wetting or emulsifying agents, or pH buffering agents. The composition is preferably a liquid or aqueous solution, suspension, emulsion, or dispersion. A liquid or aqueous composition can be lyophilized and reconstituted with a solution or buffer prior to use. The composition can be formulated as a suppository, with traditional binders and carriers such as triglycerides. Any of the commonly known pharmaceutical carriers, such as sterile saline solution or sesame oil, can be used. The medium can also contain conventional pharmaceutical adjunct materials such as, for example, pharmaceutically acceptable salts to adjust the osmotic pressure, buffers, preservatives and the like. Other media that can be used in the compositions and administration methods as described are normal saline and sesame oil.
Preferably, the vaccine according to the present invention is designed as an intranasal delivered vaccine, i.e. a vaccine which can be administered to an individual intranasally. Accordingly, this intranasal vaccine formulation is preferably designed as aerosol or nasal spray. As the RNA-VLP according to the present invention causes the necessary micro inflammation itself, no additional adjuvant is necessary. Accordingly, this vaccine may be provided even free of any further adjuvant. This is specifically preferred, if a fast, easy and cheap production method is needed.
According to another aspect, the present invention relates to a pharmaceutical composition comprising the VLPs according to the present invention.
A specifically preferred aspect of the present invention is drawn to influenza virus-like particles (VLPs), wherein the VLPs comprise:
hemagglutinin (HA) protein and neuraminidase (NA) protein on the surface of the VLPs,
a nucleoprotein (NP) ribonucleoprotein complex,
a matrix protein (M) ribonucleoprotein complex,
wherein the VLPs do not contain a ribonucleoprotein complex of at least PB1, PB2, and NS.
Preferably, these VLPs according to the present invention further comprise a genetically modified M ribonucleoprotein complex, preferably wherein the M ribonucleoprotein complex contains viral RNA encoding an antigen of a non-influenza virus pathogen, an oncogene or a malignant tissue protein, especially wherein the M ribonucleoprotein complex contains viral RNA encoding a fusion protein containing an M protein and a protein or antigenic protein fragment of a non-influenza virus pathogen.
According to a preferred embodiment of this aspect of the present invention, this non-influenza virus pathogen is selected from a non-influenza virus, a gram-positive or gram-negative bacterium, a fungus, a protozoan, or a prion, preferably a non-influenza RNA virus, a DNA virus, or a retrovirus, especially wherein the virus is SARS-COV-1, SARS-COV-2, or Dengue virus.
Another aspect of the present invention is a method for producing VLPs according to the present invention, comprising the steps of
Although (as stated above) further bidirectional vectors may be used as well (as long this set-up does not lead to a reproductive viral particle, i.e. a particle which is infectious after production in the host cell to which the VLP has been delivered); however, preferably only one (for NP), even more preferred only two (for NP and M), bidirectional vectors are used in the production of the VLPs according to the present invention.
Since the present method is preferably intended to provide compositions for use in human medicine, the present method further comprises the steps of filling the VLPs into a final container and finishing the VLPs to a pharmaceutical composition ready for use for administration to human individuals.
Preferred for production of the VPLs according to the present invention is any cell that supports replication of influenza virus and meets acceptable standards for regulatory approval. For regulatory reasons the VLPs according to the present invention are therefore preferably produced in cells/cell lines which are approved by the regulatory authorities. Accordingly, production in in Madin-Darby Canine Kidney (MDCK) cells, African green monkey kidney cells (Vero) cells, 293 cells, 293T cells, porcine kidney (PK) cells, owl monkey kidney (OMK) cells, Madin-Darby bovine kidney (MDBK) cells, chicken embryo kidney (CEK) cells, chicken embryo fibroblasts, primary chick kidney cells, or cells isolated from the chorioallantoic membrane of embryonated chicken eggs, preferably in MDCK cells or Vero cells, especially in MDCK cells is preferred. MDCK cell culture is specifically preferred, since MDCK cells were already approved by the FDA and EMA as cell lines for vaccine production (e.g. Flucelvax and Optaflu). MDCK cells are a model mammalian cell line used in biomedical research. MDCK cells are used for a wide variety of cell biology studies including cell polarity, cell-cell adhesions, collective cell motility, as well as responses to growth factors. It is one of few cell culture models that is suited for 3D cell culture and multicellular rearrangements known as branching morphogenesis.
The present invention also relates to the use of the present VLPs for medical use, preferably for preventing pathogen-caused diseases and for the treatment and prevention of tumour diseases (i.e. in immune oncology), preferably for the prevention or treatment of emerging viral diseases, especially for preventing influenza. Preferred virus-caused emerging diseases to be prevented and treated with the vaccines according to the present invention are those identified in Graham et al. (Graham et al., Nat. Immunol. 19 (2018), 20-28), namely Paramyxoviridaea, especially Measles virus, mumps virus, Nipah virus; Togaviridaea(-alphaviridae), especially Rubella virus, Chikungunya virus, Western equine encephalitis virus, Eastern equine encephalitis virus, Venezuelan equine encephalitis virus, Mayaro virus, Ross River virus, Barmah Forest virus, O'nyong'nyong virus, Semliki Forest virus, Getah virus, Sindbis virus; Reoviridaea, especially Rotavirus, New rotaviruses, Banna virus, Nelson Bay orthoreoviruses; Orthomyxoviridaea, especially Influenza virus A and B, multiple subtypes of influenza A virus, Dhori virus, Thogoto virus, Bourbon virus; Adenoviridaea, especially Adenovirus 4 and 7, Adenovirus 14 or 81 or other serotypes; Rhabdoviridaea; Rabies virus, Vesicular stomatitis virus (VSV); Picornaviridaea, especially Poliovirus 1, 2 and 3, Hepatitis A virus, EV71, EV-D68, rhinoviruses, Ljungan virus; Papillomaviridaea, especially HPV 6, 11, 16 and 18, as well as other serotypes; Poxviridaea, especially Variola virus, Monkeypox virus; Hepadnaviridaea, especially Hepatitis B virus; Herpesviridaea, especially Varicella virus, CMV, EBV, HSV-1, HSV-2, HHV-6, HHV-7, HHV-8; Flaviviridaea, especially Yellow fever virus, tick-borne encephalitis (TBE), Japanese encephalitis (JE), Dengue virus, HCV, Zika virus, St. Louis encephalitis virus, West Nile virus, Powassan virus, Omsk hemorrhagic fever virus, Murray Valley encephalitis virus, Rocio encephalitis virus, Kyasanur forest virus, Alkhurma virus, Russian spring and summer encephalitis virus, Central European tick-borne encephalitis virus, Wesselsbron virus, Bussuquara virus, Cacipacore virus, Ilheus virus, Iguape virus, Usutu virus; Hepeviridaea, especially Hepatitis E virus; Pneumoviridae, especially respiratory syncytial virus (RSV); metapneumovirus; Filoviridae, especially Ebola virus, Marburg virus, Retroviridae, especially HIV-1, Coronaviridae, especially SARSCOV-1, SARS-COV-2, Middle Eastern respiratory syndrome (MFRS); Parvoviridae, especially B19 virus, bocavirus; Caliciviridae, especially Norovirus; Polyomaviridae, especially JC virus, BK virus; Arenaviridae, especially Lassa virus, Machupo virus, Junin virus, Guanarito virus, Chapare virus, Sabia virus, Flexal virus, lymphocytic choriomeningitis virus, Lujo virus; Polyomaviridae, especially SV40, Merkel cell virus; Arteriviridaea, especially Simian hemorrhagic fever virus; Bunyaviridae, especially Hantavirus, Rift Valley virus, Crimean Congo hemorrhagic fever virus, California encephalitis virus, Batai virus, Bhanja virus, DobravaBelgrade virus, Erve virus, Puumala virus, Seoul virus, Tahyna virus, severe fever with thrombocytopenia syndrome virus, La Crosse encephalitis virus, Cache Valley virus, Jamestown Canyon virus, snowshoe hare virus, Heartland virus, Oropouche virus; Astroviridae, especially Astrovirus. In the VLPs according to the present invention, viral antigens of these viruses can be introduced in the M gene to elicit immune responses against this recombinant antigen upon administration of the VLPs according to the present invention (as vaccines) to a (human) individual.
Methods of treating or preventing a disease or infection, or symptoms thereof, caused by influenza virus (or other (viral) diseases) are provided. The methods comprise administering a therapeutically effective amount of a pharmaceutical composition comprising the VLPs according to the present invention (e.g., a VLP vaccine) to a subject (e.g., a mammal, in particular, a human subject). One embodiment involves a method of treating a subject suffering from, or at risk of or susceptible to disease or infection, or a symptom thereof, caused by the pathogen, especially the influenza virus. The method includes administering to the subject (e.g., a mammalian subject), an amount or a therapeutic amount of a vaccine comprising VLPs, sufficient to treat the disease, infection, or symptoms thereof, caused by the pathogen, especially the influenza virus, under conditions in which the disease, infection, and/or the symptoms thereof are treated.
In an embodiment, the methods herein include administering to the subject (including a human subject identified as in need of such treatment) an effective amount of a vaccine according to the present invention to produce such effect. The treatment methods are suitably administered to subjects, particularly humans, suffering from, having, susceptible to, or at risk of having a disease, disorder, infection, or symptom thereof, namely, caused by the pathogen, especially a flu or influenza. Identifying a subject in need of such treatment can be based on the judgment of the subject or of a health care professional and can be subjective (e.g. opinion) or objective (e.g. measurable by a test or diagnostic method).
In addition, prophylactic methods of preventing or protecting against a disease or infection, or symptoms thereof, caused by the pathogen, especially the influenza virus, are provided. Such methods comprise administering a therapeutically effective amount of a pharmaceutical composition comprising an immunogenic composition according to the present invention (e.g., a VLP vaccine) to a subject (e.g., a mammal such as a human), in particular, prior to infection of the subject or prior to onset of the disease, such as influenza.
Therefore (and as shown in the following example section), to create the RNA-VLP, the surface molecules HA, NA and the polymerases PA, PB1, PB2 expressed as proteins and the segments NP and M expressed as proteins and RNA are used. HA, NA PA, PB1 and PB2 are used in the construction of the RNA-VLPs in a unidirectional plasmid, which only produces viral protein. E.g. PCAGGS (
The invention is further illustrated by the following examples and the figures, yet without being limited thereto.
To show the functionality of the present invention, the following VLPs with HA and NA surface proteins and different configurations of RNPs were constructed:
For the prototype vaccine, HA and NA from virus strain A/New Caledonia/20/1999 and M, polymerases and NP from virus strain A/California/4/2009 were used. The individual IAV segments were isolated according to Hoffmann et al. (Arch. Virol. 146 (2001), 2275-2289, 10.1007/s007050170002). First, the vRNA was extracted from virus isolates. The vRNA was rewritten into cDNA using the UNI12 primer and a reverse transcriptase. Segment-specific sequences were then amplified by PCR using segment specific primers and purified by gel electrophoresis (Hoffmann et al., 2001). The individual segments were cloned into their intended plasmids using restriction enzymes and ligases, transformed into E. coli bacteria and plated out on agar plates. Individual colonies were selected to check the cloned insert for completeness and correctness using Sanger sequencing. The plasmids were then transformed together into MDCK cells by lipofectamine. After the transformation, the RNA-VLPs were created by “self-assembly” in the MDCK cells (Nayaket et al., Virus Res. 106 (2004), 147-165; 10.1016/j.virusres.2004.08.012). Next, the RNA-VLPs were harvested in the cell culture medium. In the future, it is planned to use simpler and more effective methods for creating the plasmids and RNA-VLPs, e.g. one pot cloning (Choi et al., Sci. Rep. 9, (2019) 8318; 10.1038/s41598-019-44813-z).
The cell death induction of the VLPs was tested in human dendritic cells, as the ability to trigger necroptosis in immune cells is crucial for vaccine effectiveness (Hartmann et al., 2017). For this purpose, dendritic cells from monocytes, which were obtained from anonymous blood donations, were grown by adding the cytokines GMCSF and IL-4. These dendritic cells were then infected with the various VLP constructs or with the influenza strain NC/99 as a positive control. Eight hours after infection, cell death induction was measured using flow cytometry. While the inclusion of the NP RNP alone into the VLP did not result in a significant increase in cell death rate compared to the uninfected negative control, there was a significant increase in the inclusion of both NP and M RNPs, which was surprisingly higher than the VLPs, where also all polymerases were included as RNPs (
The ability of the VLPs to elicit a cellular immune response was checked by a T-cell dendritic-cell co-cultivation method. For this purpose, human dendritic cells were infected with the VLP constructs or the controls (virus or vehicle). After 4 hours, dendritic cells from the same blood donor were added so that they could be activated by the danger signals from the dead infected cells. This cell mixture was again cultured after 4 hours with T cells from another donor for 2.5 days. These foreign T cells were activated on the one hand by the graft-versus-host reaction and on the other hand by the status of the dendritic cells and thereby driven to proliferation. The proliferation was then measured by flow cytometry using the dilution of a dye, which is associated with each cell division (proliferation) (
Similar to the cell death experiments, the empty VLPs could not trigger an increased T cell proliferation compared to the negative control. This is an indication that vaccination with surface proteins primarily elicits antibody-mediated immunity. The VLPs with M and NP RNPs, on the other hand, were able to produce at least a similarly high T cell proliferation as an infection with a real influenza virus (positive control). Interestingly, the M/NP RNP combination was even more effective than the combination of NP and all three polymerases. The VLP construct containing only the NP RNP was able to cause a slight increase in T cell proliferation. These data show that a VLP consisting of a surface including HA, NA and M proteins filled with NP and M RNPs is a good trigger of cellular anti-viral immunity (
In summary, the present invention consists of combining the technology of the VLPs and complexes expressing viral RNA and the resulting vaccine looking like an infectious particle for the immune system. After being absorbed into an organism, these RNA-VLPs behave like an infectious IAV virion by penetrating the cell nucleus and beginning to express viral RNA through the polymerases they have brought with them. This newly synthesized RNA then triggers an inflammatory signal cascade that boosts cellular immunity. Exactly this step is not used in current vaccination strategies. We have already proven that this innovation creates the cellular immunity necessary for long-lasting protection in the cell culture system.
In vivo proof of concept is provided by two experiments. The first experiment focuses on testing the effect of RNA-VLP as a sole vaccination against porcine influenza. In a second experiment, an RNA-VLP vaccine is constructed with broader activity against influenza and a porcine corona virus, which causes pathologies in pigs comparable to those observed in humans when infected with the current SARS-CoV-2.
II.1. Proof of Concept of Vaccination Against IAV with RNA-VLPs in Pigs.
An RNA-VLP with segments from a recently isolated porcine H1N1 IAV isolate is constructed as described in the sections above. The efficacy of the RNA-VLP as a vaccine against influenza is tested in a challenge experiment where the usefulness of the RNA-VLP is compared with a conventional veterinary anti influenza vaccine. 30 animals are grouped in three groups of 10: (i) animals getting the RNA-VLPs plus vehicle, (ii) animals taking the conventional vaccine, and vehicle and (iii) vehicle group. After vaccination 5 of the ten animals are challenged with an IAV infection (
For this experiment a RNA-VLP is constructed where a part of the nucleoprotein sequence of the porcine respiratory corona virus (PRCv) is added to the M segment RNP. PRCv has a similar structure to SARS-CoV-2 and serves as a model as there is currently no animal model to test SARS-CoV-2 infections. 40 animals are grouped in two groups of 20: (i) animals getting the RNA-VLPs plus vehicle, and (ii) vehicle group. After vaccination, groups of five of the twenty animals are challenged with an IAV, PRCv, a combination of IAV and PRCv or vehicle (
For this experiment, a RNA-VLP with a chimeric IAV M RNP will be constructed. The chimeric M RNP will contain genetic information of the IAV M segment as well as genetic information fully or partially describing one of the proteins of the SARS-CoV-2. VLP will be constructed as described above. Those VLPs will be used to vaccinate pigs. After vaccination and a possible booster vaccination blood will be drawn from the animals, which will be used in serological and in vitro cell immunological tests. As soon as a valid and useable animal model for SARS-CoV-2 is identified the anti SARS-CoV-2 RNA-VLP will be tested in a in vivo challenge study (
The present invention discloses the following preferred embodiments:
1. Influenza virus-like particles (VLPs), wherein the VLPs comprise:
hemagglutinin (HA) protein and neuraminidase (NA) protein on the surface of the VLPs,
a nucleoprotein (NP) ribonucleoprotein complex,
wherein the VLPs do not contain a ribonucleoprotein complex of at least one of PB1, PB2, and NS2.
2. VLPs according to embodiment 1, further comprising a matrix protein (M) ribonucleoprotein complex.
3. VLPs according to embodiment 1 or 2, wherein the HA protein is selected from the group of seasonal, non-pandemic HA proteins.
4. VLPs according to any one of embodiments 1 to 3, wherein the NA protein is selected from the group of seasonal, non-pandemic NA proteins.
5. VLPs according to any one of embodiments 1 to 4, further comprising a genetically modified M ribonucleoprotein complex, preferably wherein the M ribonucleoprotein complex contains viral RNA encoding an antigen of a non-influenza virus pathogen, an oncogene or a malignant tissue protein, especially wherein the M ribonucleoprotein complex contains viral RNA encoding a fusion protein containing an M protein and a protein or antigenic protein fragment of a non-influenza virus pathogen.
6. VLPs according to embodiment 5, wherein especially the non-influenza virus pathogen is selected from a non-influenza virus, a gram-positive or gram-negative bacterium, a fungus, a protozoan, or a prion, preferably a non-influenza RNA virus, a DNA virus, or a retrovirus, especially wherein the virus is SARS-COV-1, SARSCOV-2, or Dengue virus.
7. VLPs according to any one of embodiments 1 to 6, wherein the VLPs comprise:
| Number | Date | Country | Kind |
|---|---|---|---|
| 20169787.7 | Apr 2020 | EP | regional |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/EP2021/055928 | 3/9/2021 | WO |
