Insertion of the Bacillus thuringiensis crystal protein gene into plant colonizing microorganisms and their use

Information

  • Patent Grant
  • 6197747
  • Patent Number
    6,197,747
  • Date Filed
    Wednesday, June 30, 1999
    25 years ago
  • Date Issued
    Tuesday, March 6, 2001
    23 years ago
Abstract
The invention relates to genetically engineered plant-colonizing microorganisms which proliferate in symbiotic or non-detrimental relationships with the plant in the plant environment. Such microorganisms contain DNA derived from Bacillus thuringiensis which codes for the insecticidal crystal protein toxin. The engineered plant-colonizing microorganisms of the invention and their progency are active against a variety of lepidopterous pests. The invention further relates to the use of such plant-colonizing microorganisms in a method of killing or inhibiting lepidopterous pests and to insecticidal compositions containing the plant-colonizing microorganism as the active insecticidal agent.
Description




BACKGROUND OF THE INVENTION




The present invention is directed to a plant-colonizing microorganism, which has been engineered to contain heterologous DNA coding for a high molecular weight protein having insecticidal activity against lepidopterous larvae. The invention is also directed to insecticidal compositions containing such microorganisms as the active agent and to the use of such plant-colonizing microorganisms in a method of combatting lepidopterous pests.






Bacillus thuringiensis


is a spore forming soil bacterium which is known for its ability to produce a parasporal crystal which is lethal to a wide variety of lepidopteran larvae. The crystals, which account for 20-30% of the dry weight of sporulated cultures, are composed primarily of a single, high molecular weight protein (134,000 daltons) which is synthesized only during sporulation.




Whiteley et al (1) reported the isolation of plasmid DNA from


Bacillus thuringiensis var. kurstaki


HD-1, insertion of said DNA into the cloning vector pBR322 and transformation into


Escherichia coli


strain HB101. Colonies presumed to contain recombinant plasmids were screened for production of an antigen that would react with an antibody made against


B. thuringiensis


crystal protein toxin. One recombinant strain, identified as ES12, was isolated which synthesized a polypeptide of 130,000 daltons which reacted with antibody directed to the crystal protein. Protein extracts of ES12 were toxic to larvae of the tobacco hornworm,


Manduca sexta


. The amounts of polypeptide produced were very low compared to those that can be produced by


B. thuringiensis


. This appeared to be due to the different methods of regulation of protein production in


B. thuringiensis


and


E. coli.






Klier et al (2) reported that the crystal protein gene of


Bacillus thuringiensis


strain berliner 1715 occurred on both a large host plasmid and on the chromosomal DNA. A DNA sequence corresponding to the chromosomal sequence was inserted into plasmid pBT 15-88. The inserted sequence of pBT 15-88 was not expressed in


E. coli


. A 14 Kb BamHI DNA fragment from the 42 megadalton host plasmid was cloned into the BamHI site of pHV33 and this vector was inserted into


E. coli


. Extracts of


E. coli


containing the recombinant plasmid were immunologically cross-reactive against antibodies directed against purified crystal protein. The polypeptide synthesized by


E. coli


containing the recombinant plasmid had approximately 10% the activity of that synthesized by sporulating cells of


B. thuringiensis


. Five-fold concentrated extract of


E. coli


harboring the recombinant plasmid when spread on cabbage leaves and fed ad libitum were toxic to the larvae of


Pierris brassica


. Klier also inserted pHV33 containing the 14 Kb insert into


B. subtilis


. The crystal protein gene was not expressed in vegetative cells of


B. subtilis


although it was expressed in sporulating cells, the amount of crystal protein produced by the sporulating cells was about 10% of that produced by sporulating


B. thuringiensis.






Held et al (3) obtained DNA fragments of


B. thuringiensis var. kurstaki


by EcoRI digestion and cloned these fragments into the vector Charon 4A.


E. coli


were infected with a recombinant bacteriophage, C4R6C, consisting of cloning vector Charon 4A and DNA from


B. thuringiensis


. These infected cells produced protoxin antigen which was the same size as the


B. thuringiensis


protoxin and protein extracts were toxic to neonate larvae of


Manduca sexta


. Hybridiza-tion of C4K6C DNA to


B. thuringiensis


plasmids indicated that the original Charon 4A clone contained the genes of chromosomal, not plasmid origin.




Wong et al (4) reported the nucleotide sequence of the promoter region and part of the coding region of the crystal protein gene from


B. thuringiensis var. kurstaki


HD-1-Dipel. A potential ribosome binding site of 11 nucleotides was located three nucleotides upstream from the initiator ATG codon. The deduced sequence for the first 333 amino acids of the crystal protein was reported.




U.S. Pat. No. 4,448,885 describes plasmids capable of replicating in an


E. coli


bacterial host species which contains expressible heterologous DNA coding for a polypeptide of 130,000 daltons which has the immunological properties of the crystal protein of


B. thuringiensis


. Also disclosed is an


E. coli


bacterial strain transformed to express a polypeptide of 130,000 daltons which reportedly has immunological properties of the crystal protein of


B. thuringiensis


. A method of using said bacterial strains to produce an insecticidal effect is also disclosed.




Commercial insecticidal preparations containing spores and crystalline protein produced by


Bacillus thuringiensis


are available as wettable powders and aqueous suspensions under such names as Dipel® and Thuricide®. These materials are used for the control of lepidopteran larvae such as Spruce budworm, cabbage looper, imported cabbage worm, gypsy moth, etc., which prey upon tobacco, cotton, soybeans, etc.




Significant limitations to the use of commercial preparations of crystalline endotoxin of


Bacillus thuringiensis


include the need for repeated applications of the insecticidal preparations and limitation of the insect target range. Another disadvantage is that the crystal protein is only produced during the sporulation stage of the


B. thuringiensis


life cycle. Such a growth phase limitation, particularly in an industrial process, can result in inconvenience and excessive time requirements during manufacture. At the completion of sporulation, the self-lysing cells release both spores and crystals into the culture medium. Because of environmental concerns it is desirable that commercial insecticidal preparations be substantially free of spores. However, because of the similarity in size and density of the spores and crystal protein toxin, separation of the crystals from the spores is complicated and laborious and thus, costly. Further, pressures resulting from growth phase limitations or other factors may result in strains of


B. thuringiensis


losing their ability to produce the crystals; such acrystalliferous strains do not have insecticidal activity.




Although the isolation of DNA from


B. thuringiensis


coding for the crystal protein toxin and the insertion of this DNA into expression vectors for the transformation of


E. coli


or


B. subtilis


is known, the prior art does not teach that such DNA can be inserted into plant-colonizing microorganisms, that such DNA will be expressed and that the plant-colonizing microorganism will have insecticidal activity against lepidopteran pests. Nor does the art teach that such plant-colonizing microorganisms can live and grow in the “plant environment” and give contact or systemic season long insect control avoiding the need for repeated applications of the insecticidal crystal protein. The delivery of insecticidal protein via a genetically engineered plant-colonizing microorganism which colonizes the “plant environment” and which expresses the insecticidal protein in the plant environment, i.e., on the leaf, stem, stalk, floral parts or root surface is unexpected in view of the prior art which is directed to the production of insecticidal crystal protein in culture.




The insecticidally active genetically engineered plant-colonizing microorganisms of the present invention thus provide a superior methods of combatting certain lepidopterous insects which avoids the problems associated with the use of conventional chemical insecticides and which avoids the problems and expense related to the production of the insecticidally active protein in culture and separation and purification of the insecticidal protein from the culture medium.




SUMMARY OF THE INVENTION




The invention relates to genetically engineered plant-colonizing microorganisms which proliferate in symbiotic or non-detrimental relationships with the plant in the plant environment. Such microorganisms contain DNA derived from


Bacillus thuringiensis


which codes for the insecticidal crystal protein toxin. The engineered plant-colonizing microorganisms of the invention and their progeny are active against a variety of lepidopterous pests. The invention further relates to the use of such plant-colonizing microorganisms in a method of killing or inhibiting lepidopterous pests and to insecticidal compositions containing the plant-colonizing microorganism as the active insecticidal agent.











BRIEF DESCRIPTION OF THE DRAWINGS




Following is a brief description of the drawings which are not drawn to scale but are illustrative of materials which may be used in practicing the invention.





FIG. 1

is a restriction endonuclease cleavage map of the inserted


B. t


. fragment of pMAP2, pMAP3 and pMAP4.





FIG. 2

is a restriction endonuclease cleavage map of the inserted


B. t


. fragment of pMAP8, pMAP10 and pMAP11.





FIGS. 3A

to


3


K illustrates the DNA sequence and derived amino acid sequence of the protein toxin encoded by plasmid pMAP4.











DETAILED DESCRIPTION OF THE INVENTION




The present invention is directed to a genetically engineered plant-colonizing microorganism containing heterologous DNA which expresses a protein having insecticidal activity and having substantially the immunological properties of the crystal protein toxin of


Bacillus thuringiensis


. The invention further relates to the use of such plant-colonizing microorganisms in a method of inhibiting the growth and development of lepidopterous pests and to insecticidal compositions containing these plant-colonizing microorganisms as the active insecticidal agent.




As used herein, the term “plant-colonizing microorganism” refers to a microorganism which is capable of colonizing the “plant environment” and which can express the insecticidal protein in the “plant environment”. The plant associated microorganism is one which can exist in symbiotic or non-detrimental relationship with the plant in the “plant environment”. As used herein, the term “plant-colonizing microorganism” does not include spore forming organisms of the family Bacillaceae as for example,


Bacillus thuringiensis var. kurstaki, Bacillus thuringiensis var. israeliensis


and


Bacillus subtilis.






The term “plant environment” refers to the surface of the plant, e.g., leaf, stem, stalk, floral parts or root surface and to the “rhizosphere”, i.e., the soil which surrounds and which is influenced by the roots of the plant.




Exemplary of the plant-colonizing microorganisms which may be engineered as taught herein are bacteria from the genera Pseudomonas, Agrobacterium, Rhizobium, Erwinia, Azotobacter, Azospirillum, Klebsiella, Flavobacterium and Alcaligenes. Rhizosphere colonizing bacteria from the genus Pseudomonas are preferred for use herein, especially the flourescent pseudomonads, e.g.,


Pseudomonas fluorescens


which is especially competitive in the plant rhizosphere and in colonizing the surface of the plant roots in large numbers. Another group of particularly suitable plant-colonizing microorganisms for use herein are those of the genus Agrobacterium;


Agrobacterium radiobacter


is particularly suitable for use herein.




As used herein, the term “heterologous DNA” refers to any DNA fragment isolated from


B. thuringiensis


which codes for a protein that is immunologically cross-reactive to the insecticidally active crystal protein toxin produced by


B. thuringiensis


. Both plasmid and chromosomal DNA, or a sub-fragmentation sequence thereof, may be used to genetically engineer the plant-colonizing microorganisms described herein. The synthetically produced equivalents may likewise be used and such use is contemplated herein. Stated another way, DNA from whatever source, which expresses an insecticidally active protein which is substantially immunologically cross-reactive with the crystal protein toxin of


B. thuringiensis


is contemplated for use in genetically engineering the plant-colonizing microorganisms described herein.




Plasmid DNA from


B. thuringiensis var. kurstaki


HD-1 was used herein as the source of the crystal protein toxin gene. This strain was obtained from Dr. T. Yamamoto of the USDA—Brownsville, Tex. There are a variety of publicly available


B. thuringiensis


strains which may likewise be used; e.g.,


B. thuringiensis var. kurstaki


HD-1 (NRRL B-3792) and


B. thuringiensis var. kurstaki


HD-73 (NRRL B-4499). See also U.S. Pat. No. 4,277,564.




The plasmid DNA fragment isolated from the


B. thuringiensis


donor strain was a 16 Kb BamHI fragment which expresses protein that is immunologically cross-reactive with antibody made to the 134,000 dalton crystal protein toxin of


B. thuringiensis


. The 16 Kb BamHI fragment was subcloned to produce an 8.1 Kb BamHI-PstI fragment. This fragment was further subcloned to produce a 4.6 Kb HpaI-PstI fragment. All of these DNA fragments coded for an insecticidally active protein toxin of about 134,000 daltons in size and which was immunologically cross-reactive with antibody made to the crystal protein toxin of


B. thuringiensis


. Deletions of the 4.6 Kb fragment are contemplated for use herein to the extent that the deletions do not result in the loss of the insecticidal properties of the protein capable of being coded by the deletion fragments. DNA fragments have been made by deletion ranging from 4.1-2.4 Kb in size and coding for an insecticidally active protein of about 110,000 to about 80,000 daltons.




As would be recognized by skilled artisans, there are inherent advantages in using the smallest possible DNA fragment which will still express insecticidally active protein. For example, a higher yield of


B. t


. DNA is obtained in the cloning steps and introduction of superfluous DNA not coding for the insecticidally toxin into the genome of the plant-colonizing microorganism is reduced.




Cloning vectors used herein are known in the art and are generally available. Choice of a particular vector is within the skill of the art and is largely a matter of individual preference. Plasmid cloning vectors which may be mentioned as being suitable for use herein are identified in Table I.
















TABLE I











Plasmid




Brief








Vector




Description




Reference













pBR28









Bolivar, F.,









(1978) Gene









4:121







pUC7









Vieira, J. and









Messing, J.









(1982)









Gene 19:259







pUC8




Multi-site pBR322




Vieira, J. and








(ATCC 37017)




Messing, J.








like Vector




(1982) Gene









19:259







pMON5008




Derivative of




USSN 592,158








pKT230




filed 3/21/84















The plant-colonizing microorganisms of the invention are useful in a method of combatting lepidopteran pests wherein an insecticidally effective amount of the plant-colonizing microorganism is applied to the plant environment or to the plant seed. The plant-colonizing microorganisms of the invention will have the same spectrum of insecticidal activity as the crystal protein toxin of


Bacillus thuringiensis Berliner var. kurstaki


. That is, the microorganisms of the invention are insecticidally active against such lepidopteran larvae as, for example, Spruce budworm, wax moth, cabbage looper, imported cabbage worm, gypsy moth and tobacco hornworm.




The insecticidal plant-colonizing microorganisms of the invention may be applied directly to the plant environment, e.g., to the surface of the leaves, roots or floral parts or to the plant seed. When used as a seed coating, the plant-colonizing microorganisms of the invention are applied to the plant seed prior to planting. Generally, small amounts of the insecticidally active microorganism will be required to treat such seeds.




The determination of an insecticidally effective amount of plant-colonizing microorganisms useful in the method of the invention required for a particular plant is within the skill of the art and will depend on such factors as the plant species, method of planting, and the soil type, (e.g., pH, organic matter content, moisture content).




Compositions containing the insecticidally active plant associated microorganism of the invention are prepared by formulating the biologically active microorganism with adjuvants, diluents, carriers, etc. to provide compositions in the form of finely-divided particulate solids, granules, pellets, wettable powders, dusts, aqueous suspensions, gels, dispersions, and emulsions. Illustrative of suitable carrier vehicles are: solvents e.g., water or organic solvents and finely divided solids, e.g., kaolin, chalk, calcium carbonate, talc, silicates and gypsum.




It is contemplated herein to use the insecticidal microorganisms in the methods and compositions of the invention in encapsulated form; e.g., the plant-colonizing microorganism can be encapsulated within shell walls of polymer, gelatin, lipid and the like or other formulation aids as for example emulsifiers, dispersants, surfactants, wetting agents, anti-foam agents and anti-freeze agents, may be incorporated into the insecticidal compositions, especially if such compositions will be stored for any period of time prior to use.




In addition to the insecticidally active plant-colonizing microorganism the compositions of the invention may additionally contain other known biologically active agents, for example, a herbicide, fungicide, or other insecticide. Also, two or more insecticidally active plant-colonizing microorganisms may be combined.




The application of insecticidal compositions containing the genetically engineered plant-colonizing microorganisms of the invention as the active agent can be carried out by conventional techniques utilizing, for example, spreaders, power dusters, boom and hand sprayers, spray dusters and granular applicators.




The compositions of the invention are applied at an insecticidally effective amount which will vary depending on such factors as, for example, the specific lepidopteran larvae to be controlled, the specific plant to be treated and method of applying the insecticidally active compositions.




The following examples further illustrate various specific embodiments of the invention described herein. As would be apparent to skilled artisans, various changes and modifications from these examples are possible and are contemplated within the scope of the invention described here.




The insertion of heterologous DNA derived from


B. thuringiensis


coding for a high molecular weight protein having insecticidal activity into a plant-colonizing microorganism was carried out as follows:




Starting Microorganism






Bacillus thuringiensis var. kurstaki


HD-1 utilized herein as the source of plasmid DNA for the recombinant plasmids was obtained from Dr. Takashi Yamamoto of the United States Department of Agriculture (USDA).


B. thuringiensis


strains were maintained as sporulated stock cultures according to standard procedures. Cultures were routinely monitored for crystal production by phase contrast microscopy.




Preparation of Synthetic Oligonucleotide Probes




The amino acid sequence of the crystal protein toxin gene isolated from


Bacillus thuringiensis var. kurstaki


HD-1 was partially determined according to the method of Hunkapiller et al (5). These sequences were verified using the DNA sequence of the NH


2


-terminal portion of the crystal protein gene disclosed by Wong et al (4). Synthetic oligonucleotide sequences based on an amino acid sequence determined from the crystal protein polypeptide were prepared according to the procedure of Beaucage et al (6). The oligonucleotide probes prepared are as shown in Table II.












TABLE II











SYNTHETIC OLIGONUCLEOTIDE PROBES















Size




Probe Seguence




Area of B.t. Protein











14-mer




TGG GGA CCG GAT TC




1200 bp region







14-mer




GAA AGA ATA GAA AC




*27-31 amino acid









region







21-mer




CCT GAA GTA GAA-




*19-25 amino acid








GTA TTA GGT




region













*numbered from NH


2


- terminal end













Preparation and Isolation of Plasmid DNA From


B. Thuringiensis






Plasmid DNA from


B. thuringiensis var. kurstaki


HD-1 was purified from 1 to 2 liters of culture according to the procedure of Kronstad et al (7). All plasmid preparations were banded at least once in CsCl/ethidium bromide gradients. Plasmids 30 megadaltons and larger in size were preferentially isolated.




Digestion with restriction enzymes EcoRI, PstI, HindIII, BamHl and SmaI, was carried out according to conditions recommended by the supplier (Boehringer Mannheim).


Escherichia coli


strain JM 101 (8) and strain SR-200 (9) were used as the recipients for the transformation step. Competent cells were prepared according to standard procedures (10). Colonies transformed with plasmid pUC8, were plated on L-agar with 100 μg/ml of ampicillin and 40 μl of 4% 5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside (x-gal).




Preparation of Nitrocellulose Filters and Hybridization




Plasmid DNA was transferred to nitrocellulose according to the procedure of Southern (11). Prehy-bridization was done by incubating the nitrocellulose paper with the bound transferred DNA in prehybridization fluid, 10×Denhardt's (0.2% BSA, 0.2% Ficoll, 0.2% polyvinylpyrrolidone) and 6×SSC (0.9M NaCl, 0.09M sodium citrate) for 2-4 hours at 37° C. Hybridization was done by incubating the nitrocellulose paper for 8-10 hours with 10-11 ml of the prehybridization fluid and the labelled probe. After several washes with 6×SSC at increasing temperatures (30-45° C.) the paper was exposed to X-ray film.




Cloning of the


B. t


. toxin gene in


E. coli






BamHI-restricted pBR328 (100 ng), treated with alkaline phosphatase (Boehringer Mannheim) was mixed and ligated with 500 ng of


B. thuringiensis


plasmid DNA restricted with BamHI. CaCl


2


prepared competent


E. coli


SR200 were transformed and selected by ampicillin resistance and screened for tetracycline sensitivity. Analysis by mini-plasmid prep procedures (12) identified two clones which had the correct 16 Kb insert. Southern hybridization analysis with radio-labelled probes from Table II demonstrated that the DNA fragment which contained the sequence hybridizing to the synthetic probe had been sub-cloned. The two plasmids, designated pMAP1 and pMAP2, differed only in the orientation of the DNA fragment within the vector. These plasmid constructs produced material cross-reactive to


B. t


. crystal protein toxin antibody when analyzed according to Western blot procedures (13). A restriction map of the inserted


B. t


. fragment was prepared and four EcoRI (E) sites and three Hind III (H) sites were located between the BamHI (B) sites. This is schematically illustrated as:













E. coli


SR200 containing pMAP2 has been deposited in compliance with MPEP 608.01(p) with the American Type Culture Collection, 12301 Parklawn Drive, Rockville, Md. 20852 USA and has been designated ATCC #39800.




Sub-Cloning of


B. t


. Toxin




An 8.1 Kb BamHI-PstI fragment was isolated after BamHI-PstI digestion of pMAP2 by electroelution from a preparative agarose gel onto DEAE paper used according to the directions of the manufacturer Schleicher & Schuell (14). Plasmid pUC8 was used to sub-clone the BamHI-PstI fragment of pMAP2 carrying the


B. t


. gene. Ligation of pUC8 digested with BamHI and PstI with the purified 8.1 Kb BamHI-PstI fragment was followed by transformation of competent


E.coli


JM101. Transformants were selected on the basis of ampicillin resistance and a lack of β-galactosidase activity. A clone was isolated and was confirmed to contain the desired plasmid. This construct was designated pMAP3


. E. coli


JM101 containing pMAP3 has been deposited in compliance with MPEP 608.01 (p) with ATCC and has been designated ATCC #39801.




Reduction of the


B. thuringiensis


DNA insert of pMAP3 from 8.1 Kb to 4.6 Kb was done by deleting a SmaI-HpaI fragment. Plasmid pMAP3 DNA, purified by CsCl gradient centrifugation was digested with SmaI and HpaI restriction enzymes and religated. The resulting DNA fragment was utilized to transform competent


E. coli


JM101 cells. Ampicillin resistant transformants were screened by agarose electrophoresis of mini-plasmid preparations. A clone was identified which contained a plasmid with the expected DNA restriction enzyme digestion pattern. This construct was labelled pMAP4. The above-described sub-cloning of the 16 Kb insert of pMAP2 containing the


B. thuringiensis


toxin gene to an 8.1 Kb insert (pMAP3) and a 4.6 Kb insert (pMAP4) is illustrated in FIG.


1


.




Insertion of DNA Isolated From


B. t


. Into Cloning Vector pMON5008




Plasmid pMON5008 constructed by B. C. Hemming and D. J. Drahos of Monsanto Company was used as a cloning vector to transform competent cells of


E. coli


with a 4.6 Kb fragment of plasmid DNA isolated from pMAP3. Plasmid pMON5008 is a derivative of plasmid pKT230; construction of pMON5008 is described in U.S. Ser. No. 592,158 filed Mar. 21, 1984, which is commonly assigned to Monsanto Company and the disclosure of which is herein incorporated by reference.




In order to get proper insertion of the 4.6 Kb fragment isolated from pMAP3 into pMON5008 adjustments to the ends of the 4.6 Kb fragment were required. A PstI linker (CCTGCAGG) was added to the 4.6Kb HpaI-PstI fragment as described below.




Plasmid pMAP3 (10 μg) was digested with HpaI; complete digestion was confirmed by agarose gel analysis. The digest was extracted with mixture of phenol/chloroform (1:1), followed by chloroform extraction and finally by ethanol extraction. The resulting precipitate was washed with TE buffer, (0.01M TRIS/0.001M EDTA, pH 8.0 and thereafter resuspended in same. Two pg of PstI linker (CCTGCAGG) obtained from New England Biolabs was combined with 2 units of T4 DNA kinase in a total volume of 10 μl of kinase/ligase buffer (11). The mixture was incubated at 37° C. for 1 hour. Thereafter, 2 μg of the Kinase/linker mixture was added to 2 μg of HpaI digested pMAP3 and 2 μl of T4 DNA ligase (2 units) and the resulting mixture was incubated for 18 hours at 22° C. after which 1 μl of 0.5M EDTA (pH 8.0) was added and the mixture was extracted as described above. The resulting precipitate was washed with TE buffer and resuspended in 90 μl of fresh TE buffer. The precipitate was digested with PstI and the digest was mixed with 6.0 μl of SM NaCl and run through a Sepharose CL-4B column. The fractions were collected and were screened by agarose gel electrophoresis. Fractions containing high molecular weight DNA were combined, precipitated, and the resulting precipitate was washed with TE buffer and thereafter resuspended in fresh TE buffer.




The DNA which was collected from the column was mixed with PstI digested plasmid vector pUC7 which had been treated with alkaline phosphatase and column-purified. The PstI-PstI fragment was ligated into the PstI site of pUC7 and used to transform competent


E. coli


JM101. Inserting the


B. t


. gene into the unique PstI site of pUC7 positioned the gene between two BamHI sites.




Ampicillin resistant β-gal negative transformants were selected and were analyzed for the correct plasmid construct by mini-plasmid preparations and restriction endonuclease digestion. A plasmid with a 4.6 Kb fragment flanked by both PstI and BamHI sites was isolated and designated pMAP8.




Plasmid pMON5008 DNA was isolated, digested with BamHI or BglII, treated with alkaline phosphatase and purified on a Sepharose CL-4B column. A mixture of 1 μg of this vector DNA and 2 μg of pMAP8 digested with BamHI was ligated and used to transform competent


E. coli


cells. Transformants were selected by their kanamycin resistance and screened by restriction endonuclease digestion of the plasmid DNA isolated by mini-plasmid preparation. Constructs with


B. t


. DNA inserted at both the BamHI and BglII sites of pMON5008 in both orientations were obtained and identified as pMAP12, pMAP13, pMAP14 and pMAP15.




Selection of Plant-Colonizing Microorganism






Pseudomonas fluorescens


3732 (Ps.3732) was isolated from St. Charles, Mo. farm soil. A rifampicin resistant strain designated


Pseudomonas fluorescens


3732-3 was identified by plating 1×10


9


colony forming units (CFU) on an L-agar plate with 100 μg/ml rifampicin. A nalidixic acid resistant mutant, designated Ps. 3732-3-7, was obtained by exposing to UV light 1×10


10


CFU of Ps.3732-3 in 5 ml of L-broth in an open petri plate on a gently rotating shaker. Exposure times ranged from 1 to 8 minutes and exposed colonies were plated on L-agar with 100 μg/ml of nalidixic acid. Colonies were streaked to isolation several times, grown under non-selective conditions at 30° C. in L-broth, and plated on media with and without nalidixic acid.




Engineering of Plant-Colonizing Microorganisms




Plasmids pMAP12, 13, 14 and 15 were transferred into Ps.3732-3-7 by a tri-parental mating system (16). The system consists of two donor strains and a recipient strain. The donors are two


E. coli


strains; one with the pMAP plasmid (a pMON5008 derivative with kanamycin resistance) to be transferred into Ps. 3732-3-7 and the other an


E. coli


strain with pRK2013. The transfer (tra) genes of pRK2 are located on pRK2013 and will mediate the transfer of plasmids into Ps. 3732-3-7 but will not replicate in Pseudomonads. The recipient strain is resistant to rifampicin and naladixic acid but sensitive to kanamycin.




The three strains involved in the 3-part mating system


E. coli


with pRK2013


, E. coli


with the pMON5008-derivative, and Ps.3732-3-7) were grown separately overnight in L-broth. One-tenth ml of culture was transferred to fresh L-broth and grown for three hours at 37° C. (30° C. for Ps.3732-3-7). One ml of each was pelleted by centrifugation and washed with L-broth supplemented with 0.1% glucose. All three cultures were resuspended in a total of 200 ul of L-broth and plated into the center of a freshly poured L-agar plate. The plates were incubated for 16 hours at 30° C. Cells were resuspended from the plates with 1 ml of 10 mM MgSO


4


and plated on Pseudomonas F (PF) agar (Difco catalogue #0448-01) with 100 ug/ml of rifampicin and 50 ug/ml of kanamycin.




Trans-conjugants were selected on PF agar with 50 μg/ml of kanamycin and 100 μg/ml of rifampicin. Desirable


P. fluorescens


3732-3-7 colonies on PF agar were fluorescent under long wave UV light resistant to rifampicin and kanamycin resistant due to the presence of pMAP 12, 13, 14 or 15. Colonies were streaked on plates containing 64 ug/l of X-gal indicator for


β-galactosidase


to confirm the presence of this marker.


P. fluorescens


3732-3-7 containing pMAP15 has been deposited in compliance with MPEP 608.01(p) with ATCC and is designated ATCC #39802.




Utilizing the procedure described above,


Agrobacterium radiobacter


was engineered to contain various of the novel plasmids described herein.


A. radiobacter


212-4 containing pMAP15 has been deposited in compliance with MPEP 608.01(p) with ATCC and is designated ATCC #39803.




Preparation of Deletion Derivatives of the


B. t


. Toxin Gene




Deletion derivatives of the


B. t


. crystal protein toxin gene were prepared by deleting DNA fragments of pMAP8 within the coding region of the 134,000 dalton toxin. Plasmid pMAP8 (1-1.5 μg in 20 uL of TE buffer was cut with the appropriate enzyme(s), extracted with a phenol/chloroform mixture (1:1), diluted to 40 uL with TE buffer, religated and used to transform CaCl


2


—competent JM101 cells. Plasmids with deletions were identified by screening mini-prep plasmid preparations on agarose gels after electrophoresis. Two deletion derivatives, designated pMAP10 and pMAP11, were constructed by deleting a 1.4 Kb KpnI fragment (pMAP10) and a 0.5 Hb NruI-ScaI fragment (pKAP11) from pMAP8


. E. coli


with either of these constructs produced material toxic to


Manduca sexta


. The restriction map of the deletion fragments is shown in FIG.


2


. The 2.4 Kb BamHI-KpnI fragment of pMAP10 was subcloned in pUC18 (18). pMAP10 and pUC18 were digested with BamHI and KpnI, mixed, ligated and used to transform


E. coli


JM101. A clone was isolated which contained a plasmid with a single 2.4 Kb BamHI-KpnI fragment. This plasmid was designated pMAP18


. E. coli


containing this plasmid were toxic to


Manduca sexta.






Insertion of The Deletion Derivatives Into Ps. 3732-3-7




The procedure described above for the introduction of the


B. t


. gene into


Pseudomonas fluores cens


3732-3-7 was repeated for the deleted


B. t


. DNA fragment. Plasmid DNA (pMAP10) was digested with BamHI and cloned into pMON5008 at both the BamHI and BglII sites in both orientations. These constructs were designated pMAP20, 21, 22 and 23. Immunological analysis (13) confirmed the production of CRM with anti-


B. t


. toxin antibody by


P. fluorescens


3732-3-7.




The plant-colonizing microorganisms of the invention were tested for insecticidal activity according to the following examples. In the examples which follow, protein extracts of the plant-colonizing microorganism or unlysed whole cells were used. Protein extracts were prepared as shown in Example 1.




EXAMPLE 1




Preparation of Protein Extract




Fifty milliliters of L-broth containing 100 μg/ml ampicillin was inoculated with the microorganism (control or engineered plant-colonizing microorganism) and the inoculum was maintained overnight at 37° C. (30° C. for the pseudomonads) on a shaker. The inoculum was centrifuged for ten minutes in SS-34 10K. The pellet was resuspended in 5 ml of Ellis buffer) 0.05 M citric acid, 0.05 M NaH


2


PO


4


.H


2


O, 0.05 M Na


2


CO


3


, 0.05 M 2-amino-3-methyl-1,3-propanediol, pH 10.5) 0.01 M (dithiothreitol). The suspension was quick frozen on dry ice and thereafter thawed in a water bath maintained at 30° C. Thereafter, 1 ml of glass beads (Thomas Scientific #5663 R50) was added to the suspension and the mixture vortexed for about 15 seconds. This procedure was repeated 8 times. The glass beads were removed by centrifuging through glass wool. The lysed cell sample was collected and added to an equal volume of Ellis buffer (pH 6.5). The extract was then used in the insect assay(s).




The amount of insecticidal protein expressed in several of the plant-colonizing microorganism of the invention were estimated based on ELISA (17) immunological analysis of soluble protein and Western Blot (13) analysis of total protein. Estimates for several plasmid constructs are shown in Table III.

















TABLE III













Picograms of B.t.










Protein per








Plant-Colonizing




Microgram of







Plasmid




Microorganism




Total Protein




%













pMAP12




Ps 3732-3-7




816




.08







pMAP13









252




.02







pMAP14









1460 




.14







pMAP15









1860 




.18







pMAP15






P. fluorescens






11584 




1.1








112-12







pMAP8






E. coli


JM101




120000  




12















EXAMPLE 2




Diet Assay




A standard artificial diet medium was dispensed into 3.5×1.0 cm flat bottom wells (50 wells/tray—Flow Laboratories Inc.) to a volume of ca. 5 mls. The agar based diet hardened within a short period of time and was thereafter treated with the test (or control) material. 100 ul of test (or control) material was applied with an automatic pipettor to the surface of each of 10 wells of diet. An alcohol flamed glass spreader was used to spread the material to insure an even coating. The treated trays were allowed to dry under a vertical flow hood before placing one neonate larvae on the diet surface of each of 10 wells (10 larvae/treatment). The trays were sealed and then incubated at 28° C. for 4 days prior to evaluating the percent mortality induced by the treatment. Control treatments were included in each assay to check the effects of the diet and the un-engineered microorganism. In all cases no toxicity (i.e., mortality) was observed from the diet alone or from diet treated with non-engineered microorganisms. Table IV summarizes the results observed when microorganisms containing novel plasmids of this invention were tested for toxicity against larvae of tobacco hornworm (


Manduca sexta


), corn earworm (


Heliothi zea


) and cabbage looper (


Trichoplasia ni


).
















TABLE IV














Material




%






Insect




Plasmid




Microorganism




Applied




Mortality









Corn Earworm




pMAP1






E


.


coli


SR200




Protein Extract




44.4







pMAP2














55.5






Tobacco




pMAP1






E


.


coli


SR200




Unlysed Cells




100






Hornworm




pMAP2














100







pMAP3






E


.


coli


JM101









100







pMAP4














100







pMAP6














100







pMAP7














100







pMAP8














100







pMAP12














100







pMAP13














100






Tobacco




pMAP8






E


.


coli


JM101




Unlysed Cells




100






Hornworm




pMAP12














100







pMAP13














100







pMAP14














100







pMAP15














100







pMAP12




Ps. 3732-3-7









100







pMAP13














100







pMAP14














100







pMAP15














100







pMAP15






A


.


radiobacter











100







212-4






Cabbage




pMAP1






E


.


coli


SR200









100






Looper





pMAP1









100






















%







Plasmid




Microorganism




Preparation




Mortality











PMAP10






E


.


coli






Unlysed cells




100







PMAP10














100







PMAP11














100







PMAP20














100







PMAP21














100







PMAP20




Ps. 3732-3-7




100







pMAP21














100







pMAP22














100







pMAP23














100















EXAMPLE 3




The procedure of Example 2 was repeated except that larvae of the black cutworm (


Agrotis ipsilon


) were used. In one test no larval mortality was observed; however, application of the engineered microorganism resulted in significant weight loss of the larvae. In another test, mortality was observed. In all cases 100 p1 of protein extract or unlysed cell preparation was applied. The results are summarized in Table V.
















TABLE V













Average










Weight






Plasmid




Microorqani8m




Preparation




% Mortality




(mg)











pMAP12




Ps. 3732-3-7




Protein Extract




0




389.6






pMON5008














0




656.2











untreated control









0




776.4






pMAP8






E


.


coli


JM 101




Lysed Cells




29.7






pMAP18














55.0




317.0






pMAP18














10.0




255.0













P


.


fluorescens











12.5




293.3







112-12-15











untreated control









0




290.8














EXAMPLE 4




Droplet Assay




A 2:1 (microbial preparation: FD&C blue dye) mix containing 10% sucrose was vortexed, then applied to the surface of a styrofoam plate in about 10 ul droplets. Neonate tobacco hornworm larvae were placed in the vicinity of the droplets and allowed to feed at will. Satiated larvae, as evidenced by their blue abdomens, were removed from the plate and placed on artificial diet. Percent mortality was evaluated after four days. The results are summarized in Table VI.

















TABLE VI











Plasmid




Microorganism




CFU/μl*




% Mortality













pMAP1






E


.


coli


SR200




1.0 × 10


5






50







pMAP2









7.5 × 10


4






100 







pMAP3






E


.


coli


JM101




7.9 × 10


4






100 







pMAP4









3.4 × 10


1






100 







pMAP1






E


.


coli


SR200




8.6 × 18


3






 0







pMAP2









2.2 × 10


4






75







pMAP4






E


.


coli


JM101




2.2 × 10


4






80













*Approximate number of Colony Forming Units ingested.













EXAMPLE 5




Leaf Disc Assay




Two (2) cm discs of tomato leaf tissue was immersed in a solution of live cells. The discs were blotted on filter paper and then the discs were added individually to wells containing distilled water moistened filter paper. The wells were identical to those used in the Diet Assay. One neonate tobacco hornworm larvae was added to each of ten wells/treatment. Mortality was recorded after 72 hours. The results are summarized in Table VIII.

















TABLE VIII











Plasmid




Microorganism




CFU/ml




% Mortality













pMAP12




Ps. 3732-3-7




  1 × 10


9






100







pMAP15









  1 × 10


9






100







pMAP15









  1 × 10


9






100







pMAP20









1.6 × 10


7






 0*







pMAP21









3.1 × 10


8






100







pMAP22









4.0 × 10


6






 0*







pMAP23









1.9 × 10


7






100













*Insects were alive; however, growth was stunted.













DNA Sequence of the


B. t


. Toxin Gene




The DNA sequence of 3734 nucleotides from pMAP4 including the entire toxin protein coding sequence was determined by the chain termination method of Sanger et al. (19). The sequence includes 75 nucleotides upstream of the translational initiation codon and extends through a KpnI site 188 nucleotides after the translational termination codon. The DNA sequence and the derived amino acid sequence for the toxin protein are shown in FIG.


3


. The first nucleotide of the protein coding sequence is labeled position +1. DNA sequences from nucleotide −75 to nucleotide 220 and from nucleotide 3245 to 3650 were also determined by the chemical method of Maxam and Gilbert (20). The DNA sequence from −171 to −160 is from the known sequence of the plasmid vector pUC7 (Vieira, supra.) DNA sequence from −159 to −153 is from a chemically synthesized PstI linker (New England Biolabs); the three nucleotides from −152 to −150 are derived from the known cleavage site for restriction enzyme HpaI. The sequence from nucleotide −149 to −76 (74 nucleotides) has been inferred from known 5′-flanking sequences of other


B. t


. toxin genes (21, 22, 23, 24).




The DNA sequence of the 2.4 Kb fragment of pMAP10 begins at the BamHI site at −171 and terminates at the KpnI site at 2175. The protein toxin expressed by this truncated gene represents about 63% of the protein toxin expressed by the entire gene.


E. coli


transformants with pMAP18, which contains only the 2.4 Kb gene fragment, were toxic to


Manduca sexta


and black cutworm (Agrotis ipsilon) which data demonstrate that the shortened protein is efficacious for insect control.




Those skilled in the art recognize that certain variations of the DNA fragments and genes disclosed and claimed herein can be made by one or more nucleotide deletions, substitutions, inversions and/or additions using known techniques. It should therefore be understood that such variations which do not result in a substantial change in the activity of the protein encoded therein are considered within the scope of the present invention.




Although this invention has been described with respect to specific embodiments, the details thereof are not to be construed as limitations, for it will be apparent that various equivalents, changes and modifications may be resorted to without departing from the spirit and scope thereof and it is understood that such equivalent embodiments are to be included herein.




REFERENCES




1. Schnepf, H. E., and Whitely, H. R. (1981) Proc. Natl. Acad. Sci. USA, 78:2893-2897




2. Klier, A., Fargette, F., Ribier, J. and Rapoport, G., (1982)


EMBO J


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3. Held, G. A., Bulla, L. A., Ferrari, E., Aronson, A. I. and Minnich, S. A., (1982)


Microbiology


, 79: 6065-6069. Held, G. A., et al,


Proc. Natl. Acad. Sci. USA


, 79:6065-6069




4. Wong, H. C., Schnepf, H. E., and Whiteley, H. E., (1983)


J. Biol. Chem


. 258:1960-1967




5. Hunkapiller, M. W., Hewick, R. M., Dreyer, W. J., and Hood, L. E., (1983)


Methods Enzymol


, 91:399-413




6. Beaucage, S. L. and Caruthers, M. H., (1981) Tetrahedron Lett. 22:1859-1862; see also Addams, S. P. et al, (1983)


JACS


105:661-663




7. Kronstad, J. W., Schnepf, H. E., and Whiteley, H. R., (1983)


J. Bacteriol


154:419-428




8. Messing, J., Crea, R. and Seeburg, P. H., (1981)


Nucleic Acids Research


9:309-321




9


. E. coli


SR200 was obtained from Dr. S. G. Rogers of Monsanto Co., St. Louis, Mo. 63167




10. Dagert, M. and Ehrlich, S. D., (1979)


Gene


6:23-28




11. Southern, E. M. (1975)


J. Molec. Biol


., 98:503-517




12


. Molecular Cloning, A Laboratory Manual


, T. Maniatis, E. F. Pritsch and J. Sambrook (1982) Cold Spring Harbor, N.Y. p. 396




13. Geshoni, J. M. and Palache, G. E., (1983) Protein Blotting: Principles and Applications,


Anal Biochem


131:1-15 or Towbin, H., Stalhelin, T. and Gordon (1979).


Proc. Natl. Acad. Sci. USA


76:4350-4354




14. Schleicher & Schuell, Inc. Keene, N. H., 03431, USA, “Binding and Recovery of DNA and RNA Using SIS NA-45 DEAE Membrane,”


Sequences-Application Update


, No. 364




15


. Molecular Cloning


(ibid) p. 396.




16. Figurski, D. H. and Helinski, D. R., (1979)


Proc. National Acad. Sci. USA


76:1648-1652




17


. The Enzyme Linked Immunosorbent Assay, A Guide With Abstracts of Microplate Applications


. A. Voller, D. Bidwell and A. Bartlett (1979) Dynatech Laboratories, Inc., Alexandria, Va.




18. Norrander, J., Kempe, T. and Messing, J., “Insertional Vectors Using Oligonucleotide Mutagenesis,”


Gene


1983, 260(1), 101-6




19. Sanger, F., Nicklen S., and Coulson, A. R. (1977)


Proc. Nat. Acad. Sci. USA


74:5463-5467




20. Maxam, A. M. and Gilbert, W. (1977)


Proc. Nat. Acad. Sci. USA


74: 560-564




21. Schnepf, H. E., Wong, H. C. and Whiteley, H. R. (1985)


J. Biol. Chem


. 260: 6264-6272




22. Thorne, L., Garduno, F., Thompson, T., Decker, D., Zounes, M., Wild, M., Walfield, A. M. and Pollock, T. J. (1986)


J. Bacteriol


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23. Adang, M. J., Staver, M. J., Rocheleau, T. A., Leighton, J., Barker, R. F., and Thompson D. V., (1985)


Gene


36: 289-300




24. Shibano, Y., Yamagata, A., Nakamura, N., Gene 34: 243-251



Claims
  • 1. An insecticidal toxin protein of Bacillus thuringiensis var. kurstaki which is encoded by the 2.4 Kb Bam HI-Kpn I DNA fragment of FIG. 2.
  • 2. A protein encoded by the DNA sequence of nucleotide 1 to 2175 of FIGS. 3A to 3K combined in the order 1-11.
  • 3. A protein encoded by a portion of the 2.4 Kb Bam HI-Kpn I DNA fragment of FIG. 2 said protein containing fewer amino acids than the protein resulting from transcription and translation of the entire DNA fragment, wherein said protein possesses the same spectrum of insecticidal activity against lepidopteran insects as the toxin protein of Baccillus thuringiensis var. kurstaki.
  • 4. An insecticidal composition comprised of:a) one or more types of plant colonizing bacteria each of which expresses a protein of FIGS. 3A to 3K combined in the order 1-11 corresponding to about position 1 to 2175; and b) a carrier substance.
  • 5. The composition of claim 4 wherein the carrier substance is a solid chosen from the group consisting of kaolin, chalk, calcium carbonate, talc, silicates, and gypsum.
  • 6. The composition of claim 4 wherein the carrier substance is water or an organic solvent.
  • 7. The composition of claim 4 wherein the plant colonizing bacteria have been encapsulated within shell walls of polymer, gelatin, or lipid.
  • 8. The composition of claim 4 wherein the plant colonizing bacteria possesses insecticidal activity against any or all lepidopterans from the group consisting of: the Spruce budwormn, the wax moth, the cabbage looper, the imported cabbage worm, the gypsy moth, the corn earworm, the black cutworm, and the tobacco hornworm.
Parent Case Info

This application is a continuation of application Ser. No. 06/917,925 filed Oct. 10, 1986, (now U.S. Pat. No. 5,959,091) which is a continuation-in-part application of application Ser. No. 06/679,849, filed Dec. 10, 1984 (now abandoned).

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Number Name Date Kind
4277564 Johnson Jul 1981
4374200 Olsen Feb 1983
4448885 Schnepf et al. May 1984
4467036 Schnepf et al. Aug 1984
4536475 Anderson Aug 1985
4666848 Gefland et al. May 1987
5928891 Klier et al. Jul 1999
Foreign Referenced Citations (3)
Number Date Country
0093062 Nov 1983 EP
0164245 Dec 1985 EP
WO8601536 Mar 1986 WO
Non-Patent Literature Citations (18)
Entry
Aronson et al. Journal of Bacteriology 151(1):399-410, Jul. 1982.
Whiteley, et al. “Cloning the Crystal Protein Gene of B.t. in E. coli” Molecular Cloning and Gene Regulation in Bacilli, Academic Press (1982) pp. 131-144.
Klier, A., Fargette, F., Ribier, J. and Rapoport, G., (1982) EMBO J., 1:791-799.
Held, G. A., Bulla, L. A., Ferrari, E., Aronson, A. I. and Minnich, S.A., (1982) Proc. Natl. Acad. Sci. USA, 79:6065-6069.
Wong, H. C., Schnepf, H.E. and Whiteley, H. R., (1983) J Bio. Chem., 258:1960-1967.
Whiteley et al., “Structural and Regulatory Analysis of a Cloned Bacillus thuringiensis Chrystal Protein Gene”, Genetics and Biotechnology of Bacilli, Academic Press (1984) pp. 375-386.
Kronstad, et al., J. of Bacteriology, (April 1983) pp. 419-428.
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Dean, D. H. (1984) Biotechnology and Genetic Engineering Reviews, 2:341-363.
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Continuations (1)
Number Date Country
Parent 06/917925 Oct 1986 US
Child 09/343867 US
Continuation in Parts (1)
Number Date Country
Parent 06/679849 Dec 1984 US
Child 06/917925 US