INTERPENETRATING NETWORK HYDROGELS WITH INDEPENDENTLY TUNABLE STIFFNESS

Abstract
Interpenetrating network hydrogels with independently tunable stiffness enhance tissue regeneration and wound healing.
Description
FIELD OF THE INVENTION

The present invention relates to hydrogels for tissue regeneration and wound healing.


SEQUENCE LISTING

The instant application contains a Sequence Listing which has been submitted in ASCII format via EFS-Web and is hereby incorporated by reference in its entirety. Said ASCII copy, created on May 18, 2022, is named 117820-09403_SL.txt and is 153,324 bytes in size.


BACKGROUND OF THE INVENTION

Wound healing is a complex physiological process orchestrated by multiple cell types, soluble factors and extracellular matrix components. Many cutaneous injuries heal rapidly within a week or two, though often leading to the formation of a mass of fibrotic tissue which is neither aesthetical nor functional. However, several pathogenic abnormalities, ranging from diabetic ulcers to infection or continued trauma, contribute to failure to heal. Chronic nonhealing wounds are a cause of significant morbidity and mortality, and constitute a huge burden in public health care with estimated costs of more than $3 billion per year. The goal of wound care therapies is to regenerate tissues such that the structural and functional properties are restored to the levels before injury.


The wound dressing market is expanding rapidly and is estimated to be valued at $21.6 billion by 2018. Wound dressing materials have been engineered to aid and enhance healing once they are deposited on the wounds. In the current wound dressing market, no single dressing is suitable for all wounds. Wound healing biomaterials are increasingly being designed to incorporate bioactive molecules to promote healing. Current developments in the field include more sophisticated wound dressing materials that often incorporate antimicrobial, antibacterial, and anti-inflammatory agents. However, the importance of mechanical forces in the context of wound dressing design, e.g., the impact of the wound dressing physical properties on the biology of cells orchestrating wound healing, has been often overlooked. For example, there is a lack of wound healing materials that mimic the stiffness and physiological environment of natural tissues at the wound site. There is also a need for wound healing biomaterials that are cost-effectively manufactured and easily customizable depending on the type of injury/wound, without the need for exogenous cytokines, growth factors, or bioactive drugs.


SUMMARY OF THE INVENTION

The invention addresses these needs and features a universal platform—a hydrogel material—useful for aiding the healing process of a tissue. The hydrogel contains collagen, which provides sites for cell attachment and mimics the natural physiological environment of a cell. Moreover, the invention provides a clean way to tune the stiffness of the hydrogel independently of other mechanical/structural variables. As such, the hydrogel is customizable to mimic the natural stiffness of the tissue at a target site, e.g., at a site that requires healing. For example, the stiffness of the hydrogel is tuned specifically to match that of a normal, healthy tissue.


Accordingly, this invention provides a composition and method to aid and enhance wound healing, e.g., for the treatment of chronic non-healing wounds. Diabetic ulcers, ischemia, infection, and continued trauma, contribute to the failure to heal and demand sophisticated wound care therapies. Hydrogels comprising interpenetrating networks (IPNs) of collagen (e.g., collagen-I) and alginate permit the control of cell behavior, e.g., dermal fibroblast behavior, simply by tuning or altering the storage moduli of the hydrogel, e.g., in a dermal dressing material. The storage modulus of a material, such as a hydrogel, is a measure of the stored energy, which represents the elastic portion of a viscoelastic material. In accordance with the methods of the invention, fully interpenetrating networks of collagen and alginate were fabricated in which gel stiffness was tuned independently of scaffold architecture, polymer concentration or adhesion ligand density. Different storage moduli promoted dramatically different morphologies of encapsulated dermal fibroblasts, and enhanced stiffness resulted in up-regulation of key-mediators of inflammation including interleukin 10 (IL10) and prostaglandin-endoperoxide synthase 2 (PTGS2) also known as COX2. The findings presented herein show that simply modulating the storage modulus of a cutaneous dressing biomaterial deposited at a wound site, without the addition of any soluble factors, augments the progression of wound healing.


The invention provides a 3-dimensional hydrogel comprising an interpenetrating network of alginate and collagen, wherein the hydrogel comprises a storage modulus of 20 Pa or greater, e.g., 20, 30, 40, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 400, 500, 600, or 800 Pa, 1, 2, 3, 4, 5, 10, 50, 100, 500 kPa, 1, 2, 3, 4, 5, 10, 50, 100, or 500 MPa, or greater. In some cases, the storage modulus is between 50 kPa and 50 MPa. In some examples, the storage modulus is between 30 Pa and 1200 Pa For example, the storage modulus is between 30 Pa and 400 Pa, (e.g., 400, 300, 250, 200, 150, 100, 75, 60, 55, 50, 45, 40, 35, or 30 Pa) or between 30 Pa and 300 Pa.


For example, the collagen comprises fibrillar collagen, e.g., collagen type I, II, III, V, XI, XXIV, or XXVII. Other types of collagen are also included in the invention. In one embodiment, the collagen comprises type I collagen, also called collagen-I.


In some cases, the alginate does not contain any molecules to which cells adhere. For example, the alginate is not modified by a cell adhesion molecule, i.e., the alginate lacks a cell adhesion molecule, e.g., a polypeptide comprising the amino acid sequence, arginine-glycine-aspartate (RGD).


In the hydrogel, alginate is crosslinked to form a mesh structure. The hydrogels of the invention do not comprise any covalent crosslinks. In particular, the alginate is not covalently cross-linked. The alginate is non-covalently or ionically cross-linked. In some embodiments, the alginate is ionically crosslinked, e.g., by divalent or trivalent cations. Exemplary divalent cations include Ca2+, Mg2+, Sr2+, Ba2+, and Be2+. Exemplary trivalent cations include Al3+ and Fe3+. In one embodiment, the divalent cation comprises Ca2+. For example, the alginate is crosslinked by a concentration of 2 mM-10 mM Ca2+, e.g., at least about 5 mM, e.g., at least about 9 mM Ca2+.


In some examples, the alginate comprises a molecular weight of at least about 30 kDa, e.g., at least about 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300 kDa, or greater. For example, the molecular weight of the alginate is at least about 100 kDa, e.g., at least about 100, 120, 140, 160, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300 kDa, or greater. For example, the molecular weight of the alginate is about 200 kDa, 250 kDa, or 280 kDa.


In some embodiments, the hydrogel comprises multidirectional collagen fibrils (e.g., collagen-I fibrils), e.g., the hydrogel comprises collagen (e.g., collagen-I) fibrils that are not aligned/parallel. For example, the alginate mesh is intercalated by the collagen (e.g., collagen-I) fibrils. In other words, the collagen-I fibril(s) are reversibly included/inserted within the alginate mesh or are layered together with the alginate mesh. In some examples, the collagen protein comprises full length collagen subunits. In other examples, the collagen protein comprises fragments of collagen subunits, e.g., containing less than 100% of the amino acid length of a full length subunit polypeptide (e.g., less than 100, 99, 98, 97, 96, 95, 90, 85, 80, 75, 70, 65, 60, 55, 50, 40, 30, 20, or 10%).


In some cases, the hydrogel comprises a collagen (e.g., collagen-I) concentration of about 1.5 mg/mL, e.g., 1-2 mg/mL. In some examples, the hydrogel comprises an alginate concentration of about 5 mg/mL, e.g., 2-10 mg/mL. For example, the weight ratio of alginate to collagen in the hydrogel is about 2.5-5 (e.g., about 2.5, 3, 3.3, 3.5, 4, 4.5, or 5).


In some embodiments, the hydrogel comprises interconnected pores, e.g., comprising nanopores. For example, the hydrogel contains nanopores, micropores, macropores, or a combination thereof. The size of the pores permits cell migration or movement (e.g., fibroblast migration into and/or egress out of the delivery vehicle) through the pores. For example, the hydrogel comprises pores that are characterized by a diameter of 20-500 μm (e.g., 50-500 μm, or 20-300 μm). In other examples, the hydrogel comprises nanopores, e.g., pores with a diameter of about 10 nm to 20 μm. For example, the hydrogel comprises a dextran diffusion coefficient of 2.5×10−7 to 1×10−6 cm2/s.


The hydrogel of the invention comprises various relative concentrations of elements, such as carbon, oxygen, potassium, and calcium. For example, the hydrogel comprises a relative concentration of carbon of 10-50% weight/weight (e.g., 10, 20, 30, 40, or 50%), a relative concentration of oxygen of 50-70% weight/weight (e.g., 50, 55, 60, 65, or 70%), a relative concentration of potassium of 0.5-2% weight/weight (e.g., 0.5, 1, 1.5, or 2%), and/or a relative concentration of calcium of 0.5-10% weight/weight (e.g., 0.5, 1, 2, 5, 7, or 10%).


In some cases, the hydrogel further comprises a mammalian cell, such as a fibroblast. For example, the fibroblast includes a dermal fibroblast. In some examples, the cell, e.g., fibroblast, is a healthy cell (e.g., healthy fibroblast), e.g., derived/isolated from a non-injured and non-diseased tissue, such as a non-diabetic tissue. Contact of the cell with the hydrogel causes the cell to adopt or maintain an elongated or spindle-likecell shape, e.g., where the cell forms stress fiber(s). For example, contact of the cell with the hydrogel causes the cell to adopt or maintain the ability to contract and/or expand in surface area and/or volume. For example, such an ability permits the cell, e.g., fibroblast, to cover a wound and allow wound closure. In other examples, the mammalian cell comprises a stem cell, e.g., a hematopoietic stem cell, a mesenchymal stem cell, an embryonic stem cell, or an adult stem cell. For example, contact of a stem cell with the hydrogel causes the cell to adopt or maintain a spherical cell shape, e.g., where the cell does not form stress fiber(s).


In some embodiments, the mammalian cell comprises an autologous cell, allogeneic cell, or a xenogeneic cell. In some embodiments, the fibroblasts comprises an autologous fibroblast (e.g., a population of at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, or more autologous fibroblasts). Alternatively or in addition, the fibroblast comprises an allogeneic or xenogeneic fibroblast. For example, the fibroblasts comprises a population of at least 10% (e.g., at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, or more) allogeneic fibroblasts. For example, the fibroblast comprises a population of at least 10% (e.g., at least 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 98%, or more) xenogeneic fibroblasts. The fibroblasts preferably elicit a minimal adverse host response (e.g., minimal harmful inflammation and/or minimal host immune rejection of the transplanted fibroblasts).


For example, the hydrogels of the invention are used as a wound dressing materials. For example, the hydrogels of the invention are coated onto/into a wound dressing material. For example, the stiffness of the dressing materials are designed to match the stiffness of structurally intact/healthy tissue (e.g., at the site of the wound prior to injury), which can vary depending on the type of injured tissue, site of injury, natural person-to-person variations, and/or age.


The hydrogels described herein are useful for enhancing wound healing of an injured tissue, e.g., cutaneous, bony, cartilaginous, soft, vascular, or mucosal tissue.


Thus, the invention provides a wound dressing material comprising a hydrogel described herein. In some cases, the wound dressing material/hydrogel does not contain any active agents, such as anti-microbial or anti-inflammatory agents.


In other cases, the wound dressing material/hydrogel further contains a bioactive composition. Exemplary bioactive compositions include cell growth and/or cell differentiation factors. For example, a bioactive composition includes a growth factor, morphogen, differentiation factor, and/or chemoattractant. For example, the hydrogel includes vascular endothelial growth factor (VEGF), hepatocyte growth factor (HGF), or fibroblast growth factor 2 (FGF2) or a combination thereof. Other bioactive compositions include hormones, neurotransmitters, neurotransmitter or growth factor receptors, interferons, interleukins, chemokines, MMP-sensitive substrate, cytokines, colony stimulating factors and phosphatase inhibitors. Growth factors used to promote angiogenesis, wound healing, and/or tissue regeneration can be included in the hydrogel.


For example, the wound dressing materials/hydrogel further contains an anti-microbial (e.g., anti-bacterial) or anti-inflammatory agent. Exemplary anti-microbial agents include erythromycin, streptomycin, zithromycin, platensimycin, iodophor, 2% mupirocin, triple antibiotic ointment (TAO, bacitracin zinc+polymyxin B sulfate+neomycin sulfate) and others, as well as peptide anti-microbial agents. Exemplary anti-inflammatory agents include corticosteroid anti-inflammatory drugs (e.g., beclomethasone, beclometasone, budesonide, flunisolide, fluticasone propionate, triamcinolone, methylprednisolone, prednisolone, or prednisone); or non-steroidal anti-inflammatory drugs (NSAIDs) (e.g., acetylsalicylic acid, diflunisal, salsalate, choline magnesium trisalicylate, ibuprofen, dexibuprofen, naproxen, fenoprofen, ketoprofen, dexketoprofen, fluribiprofen, oxaprozin, loxoprofen, indomethacin, tolmetin, sulindac, etodolac, ketorolac, diclofenac, aceclofenac, nabumetone, piroxicam, meloxicam, tenoxicam, droxicam, lornoxicam, isoxicam, mefenamic acid, meclofenamic acid, flufenamic acid, tolfenamic acid, celecoxib, rofecoxib, valdecoxib, parecoxib, lumiracoxib, etoricoxib, firocoxib, nimesulide, licofelone, H-harpaide, or lysine clonixinate).


The invention also provides a method of promoting tissue repair, tissue regeneration, or wound healing comprising administering a hydrogel described herein to a subject in need thereof. For example, the subject contains an injured tissue, e.g., an injured cutaneous, bony, cartilaginous, soft, vascular, or mucosal tissue. In some examples, the subject has a chronic, non-healing wound, e.g., a diabetic wound or ulcer. In other embodiments, the subject has an ischemic wound, infected wound, or a wound caused by continued trauma, e.g., blunt force trauma, cuts, or scrapes.


In accordance with the methods of the invention, the hydrogel is optionally seeded with mammalian cells prior to administration, e.g., the hydrogel is encapsulated with mammalian cells prior to administration. In some cases, the mammalian cells are encapsulated within the hydrogel during the crosslinking of alginate. In other examples, the hydrogel contacts a mammalian cell after administration, e.g., the mammalian cell migrates onto and/or into the hydrogel after administration.


The hydrogels/wound dressing materials of the invention modulate the expression of various proteins in cells (e.g., fibroblasts) at or surrounding the site of administration or the site of the injured tissue. For example, the hydrogel downregulates the expression of an inflammation associated protein, e.g., IL-10 and/or COX-2, a cell adhesion or extracellular matrix protein, e.g., integrin a4 (ITGA4), metallopeptidase 1 (MMP1), or vitronectin (VTN), a collagen protein, e.g., Type IV (e.g., COL4A1 or COL4A3) or Type V (e.g., COL5A3) protein, or hepatocyte growth factor (HGF) or a member of the WNT gene family (WNTSA). For example, the expression is downregulated at the polypeptide or mRNA level. The polypeptide or mRNA level of the protein is decreased by at least 1.5-fold (e.g., at least 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel.


In some embodiments, the IL-10 polypeptide or mRNA level is decreased by at least 2-fold (e.g., at least 2, 3, 4, 5, 6, 7, 8, 9, 10-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel. In some cases, the COX-2 polypeptide or mRNA level is decreased by at least 2-fold (e.g., at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 18, 20-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel. For example, administration of the hydrogel reduces the level of inflammatory factors at a site of a wound.


In other embodiments, the hydrogel upregulates the expression of an inflammation associated protein, e.g., CCL2, colony stimulating factor 2 (CSF2), connective tissue growth factor (CTGF), and/or transgelin (TAGLN) protein. The protein is upregulated at the polypeptide or mRNA level, e.g., by at least 1.5-fold (e.g., at least 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel.


For example, the subject is a mammal, e.g., a human, dog, cat, pig, cow, sheep, or horse. Preferably, the subject is a human. For example, the patient suffers from diabetes. For example, the patient suffers from a wound that is resistant to healing. In some cases, the wound is located in an extremity of the patient (e.g., an arm, leg, foot, hand, toe, or finger). For example, the patient suffers from an ulcer, e.g., in an extremity such as an arm, leg, foot, hand, toe, or finger. Exemplary ulcers have a diameter of at least about 25 mm, 50 mm, 1 cm, 2 cm, 3 cm, 4 cm, 5 cm, 6 cm, 7 cm, 8 cm, 9 cm, 10 cm, or greater.


Routes of administration of the hydrogel include injection or implantation, e.g., subcutaneously, intramuscularly, or intravenously. Alternate routes of hydrogel administration, e.g., in the case of a wound dressing, include topical application, e.g., applying the hydrogel in the form of a coating, covering, dressing, or bandage contacting a wound. Other routes of administration comprise spraying the hydrogel onto a wound, e.g., as a fluid or aerosol, followed by solidification of the hydrogel once in contact with the wound. For example, the hydrogel is applied on/in an injured tissue, e.g., on, around, or in a wound.


The hydrogels of the invention have certain advantages. For most material systems available before the invention, bulk stiffness could be controlled by increasing or decreasing the polymer concentration, but this also changes the scaffold architecture and porosity. Thus, stiffness could not be controlled independently of architecture or porosity. Other previously available material systems allowed for independent control of stiffness but lacked a naturally occurring extracellular matrix element that is required to closely mimic the biological tissue microenvironment.


In contrast, the hydrogels described herein comprise an interpenetrating network (IPN) of two polymers (e.g., collagen-I and alginate) that are not covalently bonded but fully interconnected. This physical property permits the decoupling of the effects of gel stiffness from gel architecture, porosity, and adhesion ligand density. The ability to decouple these variables in gel structure allow for ease of manufacture and customizability. The ability to tune only stiffness of a hydrogel without at the same time changing gel architecture, porosity, and/or adhesion ligand density allows for the determination of aspects of cellular behavior caused solely by changes in stiffness. Also, both polymers, collagen-I and alginate, are biocompatible, biodegradable and widely used in the tissue engineering field. Moreover, the ability for the hydrogels described herein to promote the healing of tissues without the addition of drugs, e.g., soluble factors such as anti-inflammatory agents, in or on the hydrogels, allows for the hydrogels to be used as medical devices instead of drugs. By not including drugs, e.g., soluble factors, in/on the hydrogels, the desired biological/medical effect of the hydrogel is focused on a local area, e.g., on a local population of cells, as opposed to systemic release. By localizing the effect to a target site and not causing systemic effects through the body, the hydrogels result in limited adverse side effects. For example, the changes in the mechanical properties of a given wound dressing would be localized, exclusively sensed by cells in/on or recruited to the wound site and optionally infiltrating the wound dressing, therefore having minimal adverse effects to other tissues/cells in the body. In some cases, the hydrogels can be incorporated into/onto existing wound dressings that are FDA approved or commercialized but that lack the advantageous properties that the hydrogels provide.


The hydrogels described herein can be used in concert with biomaterial-based spatiotemporal control over the presentation of bioactive molecules, growth factor or cells. However, unlike previously available systems, solely tuning the stiffness of the hydrogel, e.g., in a wound dressing material, is sufficient to significantly enhance the wound healing response.


Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, suitable methods and materials are described below. All publications, patent applications, patents, and other references mentioned herein are incorporated by reference in their entirety. In the case of conflict, the present specification, including definitions, will control. In addition, the materials, methods, and examples are illustrative only and are not intended to be limiting.


Other features and advantages of the invention will be apparent from the following detailed description and claims.





BRIEF DESCRIPTION OF THE DRAWINGS


FIG. 1, Panels A and B show an analysis of microarchitecture of interpenetrating networks of alginate and collagen-I reveals intercalation of the polymer networks. FIG. 1, Panel A shows a scanning electron micrograph (SEM) of a hydrogel composed of alginate only, a hydrogel composed of collagen-I only and an interpenetrating network of alginate and collagen-I at the same polymer concentrations as hydrogels containing only one of the polymers. Scale bar is 2 μm. FIG. 1, Panel B shows that, using C, O, and K as internal standards, energy dispersive spectroscopy (EDS) was used to qualitatively detect different degrees of Ca incorporation within alginate/collagen-I IPNs at three different levels of calcium crosslinking. A composite EDS spectra is included as an inset.



FIG. 2, Panels A-D show that interpenetrating networks of alginate and collagen-I demonstrate no microscale phase separation nor differences in gel porosity as calcium crosslinking is varied. FIG. 2, Panel A shows a histogram of fluorescently labeled alginate intensity per pixel taken from 2 independent images of hydrogels at two different levels of calcium crosslinking. FIG. 2, Panel B shows a histogram of fast green staining intensity per pixel taken from 4 independent images of hydrogels at two different levels of calcium crosslinking. The presence of a single peak in both histograms demonstrates that there is no micro-scale phase separation in the interpenetrating networks. FIG. 2, Panel C shows a representative micrograph of confocal immunofluorescence imaging of collagen-I antibody staining of a cross-section of alginate/collagen-I interpenetrating network. Scale bars are 100 μm. FIG. 2, Panel D shows the diffusion coefficient of fluorescently labeled 70 kDa dextran as a function of calcium crosslinking in interpenetrating networks. Differences are not statistically significant (n.s.) (One-Way Anova test, p>0.05). Data is shown as mean and standard deviation of three independent experiments.



FIG. 3, Panels A-B show the storage modulus of interpenetrating networks of alginate and collagen-I can be modulated by the extent of calcium crosslinking. FIG. 3, Panel A shows frequency dependent rheology of interpenetrating networks at the indicated concentrations of calcium crosslinker, after gelation was completed. Data is representative of at least three measurements for each condition. FIG. 3, Panel B shows storage modulus at 1 Hz as a function of extent of calcium crosslinking in interpenetrating networks. Data is shown as mean and standard deviation (n=3-5).



FIG. 4, Panels A-C show that different storage moduli lead to dramatic changes in cell morphology, without affecting cell viability or collagen-I integrin receptor expression. FIG. 4, Panel A shows representative micrographs of confocal immunofluorescence imaging of the cell cytoskeleton, as shown by fluorescent F-actin staining, in cross-sections of alginate/collagen-I interpenetrating networks with storage modulus of 50 and 1200 Pa. DAPI staining is shown in blue. Scale bar is 100 μm. FIG. 4, Panel B shows a flow cytometry analysis of viability of cells recovered from interpenetrating networks crosslinked at varying calcium concentrations (n=7-10). FIG. 4, Panel C shows a flow cytometry analysis of β1-integrin antibody staining of cells recovered from interpenetrating networks crosslinked with varying concentrations of calcium (n=3). Differences are not statistically significant (n.s.) (Student's t test, p>0.05). Data is shown as mean and standard deviation in all plots. All data was collected after cells were encapsulated for 48 hours.



FIG. 5, Panels A-C show that different storage moduli promotes different wound healing genetic programs, leading to up-regulation of inflammation mediators IL10 and COX2. FIG. 5, Panel A shows the up- or down-regulation of mRNA expression of fifteen genes involved in the wound healing response by cells encapsulated in interpenetrating networks with storage modulus of 50 or 1200 Pa. Data is shown as fold-change in stiff versus soft matrices (n=3) (Student's t test, *p<0.05). FIG. 5, Panel B shows IL10 production by cells encapsulated in interpenetrating networks with storage modulus of 50 or 1200 Pa. Data is shown as fold-change in stiff versus soft matrices (n=4-6) (Student's t test, ***p<0.01). FIG. 5, Panel C shows COX2 antibody staining of cells recovered from interpenetrating networks with storage modulus of 50 and 1200 Pa (n=3) (Student's t test, *p<0.05). Data is shown as mean and standard deviation. All data was collected after cells were encapsulated for 48 hours.



FIG. 6, Panels A-B show that no microscale phase separation was observed between both polymeric meshes within the interpenetrating networks of alginate and collagen-I. FIG. 6, Panel A shows representative micrographs of confocal fluorescence imaging of FITC-labeled alginate in interpenetrating networks crosslinked with 2.44 mM (a) and 9.76 mM (b) of calcium. FIG. 6, Panel B shows representative micrographs of confocal fluorescence imaging of fast green staining of protein content in interpenetrating networks crosslinked with 2.44 mM (a) and 9.76 mM (b) of calcium.



FIG. 7 shows the gelation time course for interpenetrating networks at the indicated concentrations of calcium crosslinker. Rheology measurements showed that gelation of the interpenetrating network was completed within 40 to 50 minutes at 37° C. Storage modulus at 1 Hz is shown.



FIG. 8, Panels A-E show that cell spreading inside interpenetrating networks is not dependent on calcium concentration or number of cell adhesion ligands. FIG. 8, Panel A shows representative micrograph of fluorescence imaging of cell viability as shown by fluorescent calcein green staining of cells encapsulated in an interpenetrating network with storage modulus of 50 Pa, after 5 days of culture. Cells are able to contract and collapse the matrix. FIG. 8, Panel B shows representative brightfield image of cells encapsulated within a hydrogel composed of collagen-I only, but with 9.76 mM of CaSO4 incorporated within the matrix. Cells fully spread demonstrating that it is not the presence of calcium that inhibits cell spreading once encapsulated within the stiffer interpenetrating networks. FIG. 8, Panel C shows number of cells recovered from interpenetrating networks crosslinked with calcium at different extents. Differences are not statistically significant (n.s.) (Student's t test, p>0.05), suggesting that cells proliferate at similar rates independent of the matrix storage modulus (n=7-10). Data is shown as mean and standard deviation. Data was collected after cells were encapsulated for 48 hours. FIG. 8, Panel D shows representative histograms of flow cytometry analysis of cells recovered from interpenetrating networks crosslinked with calcium to different extents and stained for β1-integrin. Gate shown represent <1% of positive signal for the isotype control. FIG. 8, Panel E shows representative brightfield image of cells encapsulated within an interpenetrating network with storage modulus of 1200 Pa decorated with RGD binding peptides. Cells remain spherical demonstrating that the number of adhesion sites is not a limiting factor for cells to spread once encapsulated within the stiffer interpenetrating networks. Scale bars are 100 μm.



FIG. 9, Panels A-B show that enhanced matrix stiffness promotes up-regulation of inflammation mediator COX2. FIG. 9, Panel A shows representative histograms of indirect intracellular flow cytometry analysis of cells recovered from interpenetrating networks crosslinked with calcium to different extents and stained for COX2. Gate shown represent <1% of positive signal for the unstained control. FIG. 9, Panel B shows COX2 antibody staining of cells recovered from interpenetrating networks with storage modulus of 50 and 1200 Pa. (n=3) (Student's t test, ***p<0.01). Data is shown as mean and standard deviation. All data was collected after cells were encapsulated for 48 hours.



FIG. 10 is a schematic illustrating the varying stiffnesses of substrates that lead to mesenchymal stem cell differentiation into various tissue types.





DETAILED DESCRIPTION OF THE INVENTION

Biologically inert polymer hydrogels have been developed that are composed of alginate (Huebsch et al. Nature materials. 2010; 9:518-26), hyaluronic acid (Khetan et al. Nature materials. 2013; 12:458-65), and polyethylene glycol (Peyton et al. Biomaterials. 2006; 27:4881-93), which allow one to present adhesion ligands while independently tuning matrix stiffness. However, these systems lack a naturally occurring extracellular matrix element that may be required to closely mimic the biological tissue microenvironment. To better understand the mechanisms of cellular mechanosensing, new material systems that combine the complex physical features of natural matrices with the tunability of synthetic matrices (for independent control of mechanical and adhesive properties) have been emerging in the field (Trappmann et al. Current Opinion in Biotechnology. 2013; 24:948-53). IPNs of two different polymers where one is responsible for tuning mechanical properties, and other presents extracellular matrix signals, have been described (Park et al. Biomaterials. 2003; 24:893-900; Schmidt et al. Acta Biomaterialia. 2009; 5:2385-97; Akpalo et al. Acta Biomaterialia. 2011; 7:2418-27; Sun et al. Soft matter. 2012; 8:2398-404; Tong et al. Biomaterials. 2014; 35:1807-15).


In these material systems, increasing or decreasing the polymer concentration tunes the bulk stiffness, but also changes the scaffold architecture and porosity. For example, the mechanical properties of collagen-I containing IPNs have been tuned by adding various quantities of agarose (Ulrich et al. Biomaterials. 2010; 31:1875-84). Thus, in these previously described systems, stiffness cannot be tuned independently of scaffold architecture and porosity.


In another approach, a gelatin network was crosslinked by transglutaminase and an intercalated alginate network crosslinked by calcium ions (Wen et al. Macromolecular Materials and Engineering. 2013). However, the impact of solely changing the extent of calcium crosslinking in that system was not investigated.


The invention features a biomaterial system, e.g., hydrogel, made up of interpenetrating networks (IPNs) of alginate and collagen (e.g., collagen-I) that decouple the effects of gel stiffness from gel architecture, porosity and adhesion ligand density. As described in detail in the Examples, characterization of the microarchitecture of the alginate/collagen IPNs revealed that the degree of Ca+2 crosslinking did not change gel porosity or architecture, when the polymer concentration in the system remained constant. The alginate/collagen IPNs had viscoelastic behavior similar to skin, which adapts its internal collagen meshwork structure when stretched in order to minimize strain (Edwards et al. Clinics in Dermatology. 1995; 13:375-80). The storage modulus of the IPNs was tuned from 50 to 1200 Pascal (Pa) by controlling the extent of crosslinking with calcium divalent cations (Ca+2), within ranges that are compatible with cell viability. Macromolecular transport studies demonstrated that diffusion of small metabolites was not affected by the extent of crosslinking of the alginate component, consistent with previous studies on alginate gels (Huebsch et al. Nature Materials. 2010; 9:518-26).


Thus, included in the invention is a 3-dimensional hydrogel comprising an interpenetrating network of alginate and collagen, wherein the hydrogel comprises a storage modulus of 20 Pa or greater, e.g., 20, 30, 40, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 400, 500, 600, or 800 Pa, 1, 2, 3, 4, 5, 10, 50, 100, 500 kPa, 1, 2, 3, 4, 5, 10, 50, 100, or 500 MPa, or greater. In some cases, the storage modulus is between 50 kPa and 50 MPa. In some examples, the storage modulus is between 30 Pa and 1200 Pa For example, the storage modulus is between 30 Pa and 400 Pa, (e.g., 400, 300, 250, 200, 150, 100, 75, 60, 55, 50, 45, 40, 35, or 30 Pa) or between 30 Pa and 300 Pa.


Also included in the invention is a 3-dimensional hydrogel comprising an interpenetrating network of alginate and MATRIGEL™, wherein the hydrogel comprises a storage modulus of 20 Pa or greater, e.g., 20, 30, 40, 50, 60, 70, 80, 90, 100, 150, 200, 250, 300, 400, 500, 600, or 800 Pa, 1, 2, 3, 4, 5, 10, 50, 100, 500 kPa, 1, 2, 3, 4, 5, 10, 50, 100, or 500 MPa, or greater. In some cases, the storage modulus is between 50 kPa and 50 MPa. In some examples, the storage modulus is between 30 Pa and 1200 Pa For example, the storage modulus is between 30 Pa and 400 Pa, (e.g., 400, 300, 250, 200, 150, 100, 75, 60, 55, 50, 45, 40, 35, or 30 Pa) or between 30 Pa and 300 Pa.


For example, MATRIGEL™ comprises a mixture of extracellular matrix proteins, e.g., laminin 111 and collagen IV. Laminin 111 binds to α6β4 integrin. See, e.g., Niessen et al. Exp. Cell Res. 211(1994):360-367. For example, the IPNs are made of a concentration of about 3-6 mg/mL (e.g., about 4, or about 4.4 mg/mL) MATRIGEL™ (available from BD Biosciences) and about 3-7 mg/mL (e.g., about 5 mg/mL) alginate.


In some cases, the IPNs described herein present a constant number of adhesion sites, since the alginate backbone presents no binding motifs to which cells can adhere and the concentration of collagen (e.g., collagen-I) remains constant. In some examples, these IPNs are prone to cellular-mediated matrix cleavage and remodel across time. The data presented herein described the first 48 hours of cell culture.


The hydrogels of the invention have certain effects on the biology and behavior of cells. For example, adult dermal fibroblasts showed dramatic differences in cell morphology once encapsulated in alginate/collagen IPNs of various moduli. The cells spread extensively in soft substrates, but remained round in IPNs of higher stiffness. Cells probe mechanical properties as they adhere and pull on their surroundings, but also dynamically reorganize their cytoskeleton in response to the resistance that they feel (Discher et al. Science 2005; 310:1139-43). Fibroblasts sense and respond to the compliance of their substrate (Jerome et al. Biophysical Journal. 2007; 93:4453-61). Most studies, however, have been performed in two-dimensional substrates, and there is increasing evidence that adhesions between fibroblasts and extracellular matrix are considerably different in three-dimensional cultures (Cukierman et al. Science 2001; 294:1708-12). In the three-dimensional alginate/collagen IPN, fibroblasts failed to form stress fibers on stiffer matrices, likely because the resistance to deformation was higher than cellular traction forces. The failure of the cells to spread even as the alginate polymeric backbone was further decorated with RGD binding sites in stiffer matrices shows that, in some cases, the ability of fibroblasts to elongate and deform the surrounding matrix is controlled by their cell traction forces and not by cell binding site density. The results presented herein show that the morphology and contractility of fibroblasts infiltrating a wound dressing can be modulated simply by controlling the storage modulus of the biomaterial itself.


Tuning the storage modulus of the alginate/collagen interpenetrating network also induced different wound healing-related genetic profiles in dermal fibroblasts, with differential expression of genes related to inflammatory cascades, collagen synthesis, surface adhesion receptors and extracellular matrix molecules. For example, CCL2 is downregulated in fibroblasts encapsulated in stiffer matrices. Fibroblasts activate intracellular focal adhesion kinases (FAK) following cutaneous injury, and FAK acts through extracellular-related kinase (ERK) to trigger the secretion of CCL2 (Victor et al. Nature Medicine. 2011; 18:148-52). The failure of fibroblasts to spread in stiffer alginate/collagen IPNs is consistent with the down-regulated expression of CCL2. Also, COX2 and IL10 are up-regulated in fibroblasts on stiffer matrices. COX2 is responsible for the elevated production of prostanoids in sites of disease and inflammation (Warner et al. FASEB Journal. 2004; 18:790-804). IL10 has a central role in regulating the cytokine network behind inflammation, and also regulates COX2 during acute inflammatory responses (Berg et al. Journal of Immunology. 2001; 166:2674-80). As inflammation is a key aspect of wound healing (Eming et al. J Invest Dermatol. 2007; 127:514-25), the ability of a wound dressing material to induce or suppress the expression of key orchestrators of inflammation such as IL10 and COX2 is useful to guide the outcome of the healing cascade.


GenBank Accession Nos. of proteins and nucleic acid molecules described herein are presented below.


The mRNA sequence of human interleukin 10 (IL10) is provided by GenBank Accession No. NM_000572.2, incorporated herein by reference, which is shown below (SEQ ID NO: 1). The start and stop codons are shown in bold and underlined font.










(SEQ ID NO: 1)










1
acacatcagg ggcttgctct tgcaaaacca aaccacaaga cagacttgca aaagaaggca






61


tg
cacaqctc agcactgctc tgttgcctgg tcctcctgac tggggtgagg gccagcccag






121
gccagggcac ccagtctgag aacagctgca cccacttccc aggcaacctg cctaacatgc





181
ttcgagatct ccgagatgcc ttcagcagag tgaagacttt ctttcaaatg aaggatcagc





241
tggacaactt gttgttaaag gagtccttgc tggaggactt taagggttac ctgggttgcc





301
aagccttgtc tgagatgatc cagttttacc tggaggaggt gatgccccaa gctgagaacc





361
aagacccaga catcaaggcg catgtgaact ccctggggga gaacctgaag accctcaggc





421
tgaggctacg gcgctgtcat cgatttcttc cctgtgaaaa caagagcaag gccgtggagc





481
aggtgaagaa tgcctttaat aagctccaag agaaaggcat ctacaaagcc atgagtgagt





541
ttgacatctt catcaactac atagaagcct acatgacaat gaagatacga aactgagaca





601
tcagggtggc gactctatag actctaggac ataaattaga ggtctccaaa atcggatctg





661
gggctctggg atagctgacc cagccccttg agaaacctta ttgtacctct cttatagaat





721
atttattacc tctgatacct caacccccat ttctatttat ttactgagct tctctgtgaa





781
cgatttagaa agaagcccaa tattataatt tttttcaata tttattattt tcacctgttt





841
ttaagctgtt tccatagggt gacacactat ggtatttgag tgttttaaga taaattataa





901
gttacataag ggaggaaaaa aaatgttctt tggggagcca acagaagctt ccattccaag





961
cctgaccacg ctttctagct gttgagctgt tttccctgac ctccctctaa tttatcttgt





1021
ctctgggctt ggggcttcct aactgctaca aatactctta ggaagagaaa ccagggagcc





1081
cctttgatga ttaattcacc ttccagtgtc tcggagggat tcccctaacc tcattcccca





1141
accacttcat tcttgaaagc tgtggccagc ttgttattta taacaaccta aatttggttc





1201
taggccgggc gcggtggctc acgcctgtaa tcccagcact ttgggaggct gaggcgggtg





1261
gatcacttga ggtcaggagt tcctaaccag cctggtcaac atggtgaaac cccgtctcta





1321
ctaaaaatac aaaaattagc cgggcatggt ggcgcgcacc tgtaatccca gctacttggg





1381
aggctgaggc aagagaattg cttgaaccca ggagatggaa gttgcagtga gctgatatca





1441
tgcccctgta ctccagcctg ggtgacagag caagactctg tctcaaaaaa taaaaataaa





1501
aataaatttg gttctaatag aactcagttt taactagaat ttattcaatt cctctgggaa





1561
tgttacattg tttgtctgtc ttcatagcag attttaattt tgaataaata aatgtatctt





1621
attcacatc







The amino acid sequence of human IL-10 is provided by GenBank Accession No. NP_000563.1, incorporated herein by reference, which is shown below (SEQ ID NO: 2). The signal peptide is shown in underlined font, and the mature peptide is shown in italicized font.










(SEQ ID NO: 2) 










  1

mhssallccl vlltgvra
sp gqgtqsensc thfpgnlpnm lrdlrdafsr vktffqmkdq







 61

ldnlllkesl ledfkgylgc qalsemiqfy leevmpqaen qdpdikahvn slgenlktlr






121

lrlrrchrfl pcenkskave qvknafnklq ekgiykamse fdifinyiea ymtmkirn







The mRNA sequence of human prostaglandin-endoperoxide synthase 2 (PTGS2) (also known as COX2) is provided by GenBank Accession No. NM_000963.3, incorporated herein by reference, which is shown below (SEQ ID NO: 3). The start and stop codons are shown in bold and underlined font.










(SEQ ID NO: 3)










1
gaccaattgt catacgactt gcagtgagcg tcaggagcac gtccaggaac tcctcagcag






61
cgcctccttc agctccacag ccagacgccc tcagacagca aagcctaccc ccgcgccgcg





121
ccctgcccgc cgctgcgatg ctcgcccgcg ccctgctgct gtgcgcggtc ctggcgctca





181
gccatacagc aaatccttgc tgttcccacc catgtcaaaa ccgaggtgta tgtatgagtg





241
tgggatttga ccagtataag tgcgattgta cccggacagg attctatgga gaaaactgct





301
caacaccgga atttttgaca agaataaaat tatttctgaa acccactcca aacacagtgc





361
actacatact tacccacttc aagggatttt ggaacgttgt gaataacatt cccttccttc





421
gaaatgcaat tatgagttat gtgttgacat ccagatcaca tttgattgac agtccaccaa





481
cttacaatgc tgactatggc tacaaaagct gggaagcctt ctctaacctc tcctattata





541
ctagagccct tcctcctgtg cctgatgatt gcccgactcc cttgggtgtc aaaggtaaaa





601
agcagcttcc tgattcaaat gagattgtgg aaaaattgct tctaagaaga aagttcatcc





661
ctgatcccca gggctcaaac atgatgtttg cattctttgc ccagcacttc acgcatcagt





721
ttttcaagac agatcataag cgagggccag ctttcaccaa cgggctgggc catggggtgg





781
acttaaatca tatttacggt gaaactctgg ctagacagcg taaactgcgc cttttcaagg





841
atggaaaaat gaaatatcag ataattgatg gagagatgta tcctcccaca gtcaaagata





901
ctcaggcaga gatgatctac cctcctcaag tccctgagca tctacggttt gctgtggggc





961
aggaggtctt tggtctggtg cctggtctga tgatgtatgc cacaatctgg ctgcgggaac





1021
acaacagagt atgcgatgtg cttaaacagg agcatcctga atggggtgat gagcagttgt





1081
tccagacaag caggctaata etgataggag agactattaa gattgtgatt gaagattatg





1141
tgcaacactt gagtggctat cacttcaaac tgaaatttga cccagaacta cttttcaaca





1201
aacaattcca gtaccaaaat cgtattgctg ctgaatttaa caccctctat cactggcatc





1261
cccttctgcc tgacaccttt caaattcatg accagaaata caactatcaa cagtttatct





1321
acaacaactc tatattgctg gaacatggaa ttacccagtt tgttgaatca ttcaccaggc





1381
aaattgctgg cagggttgct ggtggtagga atgttccacc cgcagtacag aaagtatcac





1441
aggcttccat tgaccagagc aggcagatga aataccagtc ttttaatgag taccgcaaac





1501
gctttatgct gaagccctat gaatcatttg aagaacttac aggagaaaag gaaatgtctg





1561
cagagttgga agcactctat ggtgacatcg atgctgtgga gctgtatcct gcccttctgg





1621
tagaaaagcc tcggccagat gccatctttg gtgaaaccat ggtagaagtt ggagcaccat





1681
tctccttgaa aggacttatg ggtaatgtta tatgttctcc tgcctactgg aagccaagca





1741
cttttggtgg agaagtgggt tttcaaatca tcaacactgc ctcaattcag tctctcatct





1801
gcaataacgt gaagggctgt ccctttactt cattcagtgt tccagatcca gagctcatta





1861
aaacagtcac catcaatgca agttcttccc gctccggact agatgatatc aatcccacag





1921
tactactaaa agaacgttcg actgaactgt agaagtctaa tgatcatatt tatttattta





1981
tatgaaccat gtctattaat ttaattattt aataatattt atattaaact ccttatgtta





2041
cttaacatct tctgtaacag aagtcagtac tcctgttgcg gagaaaggag tcatacttgt





2101
gaagactttt atgtcactac tctaaagatt ttgctgttgc tgttaagttt ggaaaacagt





2161
ttttattctg ttttataaac cagagagaaa tgagttttga cgtcttttta cttgaatttc





2221
aacttatatt ataagaacga aagtaaagat gtttgaatac ttaaacactg tcacaagatg





2281
gcaaaatgct gaaagttttt acactgtcga tgtttccaat gcatcttcca tgatgcatta





2341
gaagtaacta atgtttgaaa ttttaaagta cttttggtta tttttctgtc atcaaacaaa





2401
aacaggtatc agtgcattat taaatgaata tttaaattag acattaccag taatttcatg





2461
tctacttttt aaaatcagca atgaaacaat aatttgaaat ttctaaattc atagggtaga





2521
atcacctgta aaagcttgtt tgatttctta aagttattaa acttgtacat ataccaaaaa





2581
gaagctgtct tggatttaaa tctgtaaaat cagtagaaat tttactacaa ttgcttgtta





2641
aaatatttta taagtgatgt tcctttttca ccaagagtat aaaccttttt agtgtgactg





2701
ttaaaacttc cttttaaatc aaaatgccaa atttattaag gtggtggagc cactgcagtg





2761
ttatcttaaa ataagaatat tttgttgaga tattccagaa tttgtttata tggctggtaa





2821
catgtaaaat ctatatcagc aaaagggtct acctttaaaa taagcaataa caaagaagaa





2881
aaccaaatta ttgttcaaat ttaggtttaa acttttgaag caaacttttt tttatccttg





2941
tgcactgcag gcctggtact cagattttgc tatgaggtta atgaagtacc aagctgtgct





3001
tgaataatga tatgttttct cagattttct gttgtacagt ttaatttagc agtccatatc





3061
acattgcaaa agtagcaatg acctcataaa atacctcttc aaaatgctta aattcatttc





3121
acacattaat tttatctcag tcttgaagcc aattcagtag gtgcattgga atcaagcctg





3181
gctacctgca tgctgttcct tttcttttct tcttttagcc attttgctaa gagacacagt





3241
cttctcatca cttcgtttct cctattttgt tttactagtt ttaagatcag agttcacttt





3301
ctttggactc tgcctatatt ttcttacctg aacttttgca agttttcagg taaacctcag





3361
ctcaggactg ctatttagct cctcttaaga agattaaaag agaaaaaaaa aggccctttt





3421
aaaaatagta tacacttatt ttaagtgaaa agcagagaat tttatttata gctaatttta





3481
gctatctgta accaagatgg atgcaaagag gctagtgcct cagagagaac tgtacggggt





3541
ttgtgactgg aaaaagttac gttcccattc taattaatgc cctttcttat ttaaaaacaa





3601
aaccaaatga tatctaagta gttctcagca ataataataa tgacgataat acttcttttc





3661
cacatctcat tgtcactgac atttaatggt actgtatatt acttaattta ttgaagatta





3721
ttatttatgt ettattagga cactatggtt ataaactgtg tttaagccta caatcattga





3781
tttttttttg ttatgtcaca atcagtatat tttctttggg gttacctctc tgaatattat





3841
gtaaacaatc caaagaaatg attgtattaa gatttgtgaa taaattttta gaaatctgat





3901
tggcatattg agatatttaa ggttgaatgt ttgtccttag gataggccta tgtgctagcc





3961
cacaaagaat attgtctcat tagcctgaat gtgccataag actgaccttt taaaatgttt





4021
tgagggatct gtggatgctt cgttaatttg ttcagccaca atttattgag aaaatattct





4081
gtgtcaagca ctgtgggttt taatattttt aaatcaaacg ctgattacag ataatagtat





4141
ttatataaat aattgaaaaa aattttcttt tgggaagagg gagaaaatga aataaatatc





4201
attaaagata actcaggaga atcttcttta caattttacg tttagaatgt ttaaggttaa





4261
gaaagaaata gtcaatatgc ttgtataaaa cactgttcac tgtttttttt aaaaaaaaaa





4321
cttgatttgt tattaacatt gatctgctga caaaacctgg gaatttgggt tgtgtatgcg





4381
aatgtttcag tgcctcagac aaatgtgtat ttaacttatg taaaagataa gtctggaaat





4441
aaatgtctgt ttatttttgt actatttaaa aattgacaga tcttttctga agaaaaaaaa





4501
aaaaaaa







The amino acid sequence of human prostaglandin-endoperoxide synthase 2 (PTGS2) (also known as COX2) is provided by GenBank Accession No. NP_000954.1, incorporated herein by reference, which is shown below (SEQ ID NO: 4). The predicted signal peptide is shown in underlined font.










(SEO ID NO: 4)










  1

mlaralllca vlalshtanp ccshpcqnrg vemsvgfdqy kcdctrtgfy gencstpefl







 61
triklflkpt pntvhyilth fkgfwnvvnn ipflrnaims yvltsrshli dspptynady





121
gyksweafsn lsyytralpp vpddcptplg vkgkkqlpds neiveklllr rkfipdpqgs





181
nmmfaffaqh fthqffktdh krgpaftngl ghgvdlnhiy getlarqrkl rlfkdgkmky





241
qiidgemypp tvkdtqaemi yppqvpehlr favgqevfgl vpglmmyati wlrehnrvcd





301
vlkqehpewg deqlfqtsrl iligetikiv iedyvqhlsg yhfklkfdpe llfnkqfqyq





361
nriaaefntl yhwhpllpdt fqihdqkyny qqfiynnsil lehgitqfve sftrqiagrv





421
aggrnvppav qkvsqasidq srqmkyqsfn eyrkrfmlkp yesfeeltge kemsaeleal





481
ygdidavely pallvekprp daifgetmve vgapfslkgl mgnvicspay wkpstfggev





541
gfqiintasi qslicnnvkg cpftsfsvpd peliktvtin asssrsgldd inptvllker





601
stel






The mRNA sequence of human integrin a4 (ITGA4) is provided by GenBank Accession No. NM_000885.4 and is shown below (SEQ ID NO: 5). The start and stop codons are bolded and underlined.










(SEQ ID NO: 5)










1
ataacgtctt tgtcactaaa atgttcccca ggggccttcg gcgagtcttt ttgtttggtt






61
ttttgttttt aatctgtggc tcttgataat ttatctagtg gttgcctaca cctgaaaaac





121
aagacacagt gtttaactat caacgaaaga actggacggc tccccgccgc agtcccactc





181
cccgagtttg tggctggcat ttgggccacg ccgggctggg cggtcacagc gaggggcgcg





241
cagtttgggg tcacacagct ccgcttctag gccccaacca ccgttaaaag gggaagcccg





301
tgccccatca ggtccgctct tgctgagccc agagccatcc cgcgctctgc gggctgggag





361
gcccgggcca ggacgcgagt cctgcgcagc cgaggttccc cagcgccccc tgcagccgcg





421
cgtaggcaga gacggagccc ggccctgcgc ctccgcacca cgcccgggac cccacccagc





481
ggcccgtacc cggagaagca gcgcgagcac ccgaagctcc cggctggcgg cagaaaccgg





541
gagtggggcc gggcgagtgc gcggcatccc aggccggccc gaacgctccg cccgcggtgg





601
gccgacttcc cctcctcttc cctctctcct tcctttagcc cgctggcgcc ggacacgctg





661
cgcctcatct cttggggcgt tcttccccgt tggccaaccg tcgcatcccg tgcaactttg





721
gggtagtggc cgtttagtgt tgaatgttcc ccaccgagag cgcatggctt gggaagcgag





781
gcgcgaaccc ggcccccgaa gggccgccgt ccgggagacg gtgatgctgt tgctgtgcct





841
gggggtcccg accggccgcc cctacaacgt ggacactgag agcgcgctgc tttaccaggg





901
cccccacaac acgctgttcg gctactcggt cgtgctgcac agccacgggg cgaaccgatg





961
gctcctagtg ggtgcgccca ctgccaactg gctcgccaac gcttcagtga tcaatcccgg





1021
ggcgatttac agatgcagga tcggaaagaa tcccggccag acgtgcgaac agctccagct





1081
gggtagccct aatggagaac cttgtggaaa gacttgtttg gaagagagag acaatcagtg





1141
gttgggggtc acactttcca gacagccagg agaaaatgga tccatcgtga cttgtgggca





1201
tagatggaaa aatatatttt acataaagaa tgaaaataag ctccccactg gtggttgcta





1261
tggagtgccc cctgatttac gaacagaact gagtaaaaga atagctccgt gttatcaaga





1321
ttatgtgaaa aaatttggag aaaattttgc atcatgtcaa gctggaatat ccagttttta





1381
cacaaaggat ttaattgtga tgggggcccc aggatcatct tactggactg gctctctttt





1441
tgtctacaat ataactacaa ataaatacaa ggctttttta gacaaacaaa atcaagtaaa





1501
atttggaagt tatttaggat attcagtcgg agctggtcat tttcggagcc agcatactac





1561
cgaagtagtc ggaggagctc ctcaacatga gcagattggt aaggcatata tattcagcat





1621
tgatgaaaaa gaactaaata tcttacatga aatgaaaggt aaaaagcttg gatcgtactt





1681
tggagcttct gtctgtgctg tggacctcaa tgcagatggc ttctcagatc tgctcgtggg





1741
agcacccatg cagagcacca tcagagagga aggaagagtg tttgtgtaca tcaactctgg





1801
ctcgggagca gtaatgaatg caatggaaac aaacctcgtt ggaagtgaca aatatgctgc





1861
aagatttggg gaatctatag ttaatcttgg cgacattgac aatgatggct ttgaagatgt





1921
tgctatcgga gctccacaag aagatgactt gcaaggtgct atttatattt acaatggccg





1981
tgcagatggg atctcgtcaa ccttctcaca gagaattgaa ggacttcaga tcagcaaatc





2041
gttaagtatg tttggacagt ctatatcagg acaaattgat gcagataata atggctatgt





2101
agatgtagca gttggtgctt ttcggtctga ttctgctgtc ttgctaagga caagacctgt





2161
agtaattgtt gacgcttctt taagccaccc tgagtcagta aatagaacga aatttgactg





2221
tgttgaaaat ggatggcctt ctgtgtgcat agatctaaca ctttgtttct catataaggg





2281
caaggaagtt ccaggttaca ttgttttgtt ttataacatg agtttggatg tgaacagaaa





2341
ggcagagtct ccaccaagat tctatttctc ttctaatgga acttctgacg tgattacagg





2401
aagcatacag gtgtccagca gagaagctaa ctgtagaaca catcaagcat ttatgcggaa





2461
agatgtgcgg gacatcctca ccccaattca gattgaagct gcttaccacc ttggtcctca





2521
tgtcatcagt aaacgaagta cagaggaatt cccaccactt cagccaattc ttcagcagaa





2581
gaaagaaaaa gacataatga aaaaaacaat aaactttgca aggttttgtg cccatgaaaa





2641
ttgttctgct gatttacagg tttctgcaaa gattgggttt ttgaagcccc atgaaaataa





2701
aacatatctt gctgttggga gtatgaagac attgatgttg aatgtgtcct tgtttaatgc





2761
tggagatgat gcatatgaaa cgactctaca tgtcaaacta cccgtgggtc tttatttcat





2821
taagatttta gagctggaag agaagcaaat aaactgtgaa gtcacagata actctggcgt





2881
ggtacaactt gactgcagta ttggctatat atatgtagat catctctcaa ggatagatat





2941
tagctttctc ctggatgtga gctcactcag cagagcggaa gaggacctca gtatcacagt





3001
gcatgctacc tgtgaaaatg aagaggaaat ggacaatcta aagcacagca gagtgactgt





3061
agcaatacct ttaaaatatg aggttaagct gactgttcat gggtttgtaa acccaacttc





3121
atttgtgtat ggatcaaatg atgaaaatga gcctgaaacg tgcatggtgg agaaaatgaa





3181
cttaactttc catgttatca acactggcaa tagtatggct cccaatgtta gtgtggaaat





3241
aatggtacca aattctttta gcccccaaac tgataagctg ttcaacattt tggatgtcca





3301
gactactact ggagaatgcc actttgaaaa ttatcaaaga gtgtgtgcat tagagcagca





3361
aaagagtgca atgcagacct tgaaaggcat agtccggttc ttgtccaaga ctgataagag





3421
gctattgtac tgcataaaag ctgatccaca ttgtttaaat ttcttgtgta attttgggaa





3481
aatggaaagt ggaaaagaag ccagtgttca tatccaactg gaaggccggc catccatttt





3541
agaaatggat gagacttcag cactcaagtt tgaaataaga gcaacaggtt ttccagagcc





3601
aaatccaaga gtaattgaac taaacaagga tgagaatgtt gcgcatgttc tactggaagg





3661
actacatcat caaagaccca aacgttattt caccatagtg attatttcaa gtagcttgct





3721
acttggactt attgtacttc tgttgatctc atatgttatg tggaaggctg gcttctttaa





3781
aagacaatac aaatctatcc tacaagaaga aaacagaaga gacagttgga gttatatcaa





3841
cagtaaaagc aatgatgatt aaggacttct ttcaaattga gagaatggaa aacagactca





3901
ggttgtagta aagaaattta aaagacactg tttacaagaa aaaatgaatt ttgtttggac





3961
ttcttttact catgatcttg tgacatatta tgtcttcatg caaggggaaa atctcagcaa





4021
tgattactct ttgagataga agaactgcaa aggtaataat acagccaaag ataatctctc





4081
agcttttaaa tgggtagaga aacactaaag cattcaattt attcaagaaa agtaagccct





4141
tgaagatatc ttgaaatgaa agtataactg agttaaatta tactggagaa gtcttagact





4201
tgaaatacta cttaccatat gtgcttgcct cagtaaaatg aaccccactg ggtgggcaga





4261
ggttcatttc aaatacatct ttgatacttg ttcaaaatat gttctttaaa aatataattt





4321
tttagagagc tgttcccaaa ttttctaacg agtggaccat tatcacttta aagcccttta





4381
tttataatac atttcctacg ggctgtgttc caacaaccat tttttttcag cagactatga





4441
atattatagt attataggcc aaactggcaa acttcagact gaacatgtac actggtttga





4501
gcttagtgaa attacttctg gataattatt tttttataat tatggatttc accatctttc





4561
tttctgtata tatacatgtg tttttatgta ggtatatatt taccattctt cctatctatt





4621
cttcctataa cacaccttta tcaagcatac ccaggagtaa tcttcaaatc ttttgttata





4681
ttctgaaaca aaagattgtg agtgttgcac tttacctgat acacgctgat ttagaaaata





4741
cagaaaccat acctcactaa taactttaaa atcaaagctg tgcaaagact agggggccta





4801
tacttcatat gtattatgta ctatgtaaaa tattgactat cacacaacta tttccttgga





4861
tgtaattctt tgttaccctt tacaagtata agtgttacct tacatggaaa cgaagaaaca





4921
aaattcataa atttaaattc ataaatttag ctgaaagata ctgattcaat ttgtatacag





4981
tgaatataaa tgagacgaca gcaaaatttt catgaaatgt aaaatatttt tatagtttgt





5041
tcatactata tgaggttcta ttttaaatga ctttctggat tttaaaaaat ttctttaaat





5101
acaatcattt ttgtaatatt tattttatgc ttatgatcta gataattgca gaatatcatt





5161
ttatctgact ctgccttcat aagagagctg tggccgaatt ttgaacatct gttataggga





5221
gtgatcaaat tagaaggcaa tgtggaaaaa caattctggg aaagatttct ttatatgaag





5281
tccctgccac tagccagcca tcctaattga tgaaagttat ctgttcacag gcctgcagtg





5341
atggtgagga atgttctgag atttgcgaag gcatttgagt agtgaaatgt aagcacaaaa





5401
cctcctgaac ccagagtgtg tatacacagg aataaacttt atgacattta tgtattttta





5461
aaaaactttg tatcgttata aaaaggctag tcattctttc aggagaacat ctaggatcat





5521
agatgaaaaa tcaagccccg atttagaact gtcttctcca ggatggtctc taaggaaatt





5581
tacatttggt tctttcctac tcagaactac tcagaaacaa ctatatattt caggttatct





5641
gagcacagtg aaagcagagt actatggttg tccaacacag gcctctcaga tacaagggga





5701
acacaattac atattgggct agattttgcc cagttcaaaa tagtatttgt tatcaactta





5761
ctttgttact tgtatcatga attttaaaac cctaccactt taagaagaca gggatgggtt





5821
attctttttt ggcaggtagg ctatataact atgtgatttt gaaatttaac tgctctggat





5881
tagggagcag tgaatcaagg cagacttatg aaatctgtat tatatttgta acagaatata





5941
ggaaatttaa cataattgat gagctcaaat cctgaaaaat gaaagaatcc aaattatttc





6001
agaattatct aggttaaata ttgatgtatt atgatggttg caaagttttt ttgtgtgtcc





6061
aataaacaca ttgtaaaaaa aa







The amino acid sequence of human ITGA4 is provided by GenBank Accession No. NP_000876.3 and is shown below (SEQ ID NO: 6). The predicted signal peptide is underlined.










(SEQ ID NO: 6)










1

mawearrepg prraavretv mlllclgvpt grpynvdtes allyqgphnt lfgysvvlhs







61
hganrwllvg aptanwlana svinpgaiyr crigknpgqt ceqlqlgspn gepcgktcle





121
erdnqwlgvt lsrqpgengs ivtcghrwkn ifyiknenkl ptggcygvpp dlrtelskri





181
apcyqdyvkk fgenfascqa gissfytkdl ivmgapgssy wtgslfvyni ttnkykafld





241
kqnqvkfgsy lgysvgaghf rsqhttevvg gapqheqigk ayifsideke lnilhemkgk





301
klgsyfgasv cavdlnadgf sdllvgapmq stireegrvf vyinsqsqav mnametnlvg





361
sdkyaarfge sivnlgdidn dgfedvaiga pqeddlqqai yiyngradgi sstfsqrieg





421
lqiskslsmf gqsisgqida dnngyvdvav gafrsdsavl lrtrpvvivd aslshpesvn





481
rtkfdcveng wpsvcidltl cfsykgkevp gyivlfynms ldvnrkaesp prfyfssngt





541
sdvitgsiqv ssreancrth qafmrkdvrd iltpiqieaa yhlgphvisk rsteefpplq





601
pilqqkkekd imkktinfar fcahencsad lqvsakigfl kphenktyla vgsmktlmln





661
vslfnagdda yettlhvklp vglyfikile leekqincev tdnsgvvqld csigyiyvdh





721
lsridisfll dvsslsraee dlsitvhatc eneeemdnlk hsrvtvaipl kyevkltvhg





781
fvnptsfvyg sndenepetc mvekmnltfh vintgnsmap nvsveimvpn sfspqtdklf





841
nildvqtttg echfenyqrv caleqqksam qtlkgivrfl sktdkrllyc ikadphclnf





901
lcnfgkmesg keasvhiqle grpsilemde tsalkfeira tgfpepnprv ielnkdenva





961
hvlleglhhq rpkryftivi issslllgli vlllisyvmw kagffkrqyk silqeenrrd





1021
swsyinsksn dd 






The mRNA sequence of human metallopeptidase 1 (MMP1) is provided by GenBank Accession No. NM_002421.3 and is shown below (SEQ ID NO: 7). The start and stop codons are underlined and bolded.










(SEQ ID NO: 7)










1
agcatgagtc agacagcctc tggctttctg gaagggcaag gactctatat atacagaggg






61
agcttcctag ctgggatatt ggagcagcaa gaggctggga agccatcact taccttgcac





121
tgagaaagaa gacaaaggcc agtatgcaca gctttcctcc actgctgctg ctgctgttct





181
ggggtgtggt gtctcacagc ttcccagcga ctctagaaac acaagagcaa gatgtggact





241
tagtccagaa atacctggaa aaatactaca acctgaagaa tgatgggagg caagttgaaa





301
agcggagaaa tagtggccca gtggttgaaa aattgaagca aatgcaggaa ttctttgggc





361
tgaaagtgac tgggaaacca gatgctgaaa ccctgaaggt gatgaagcag cccagatgtg





421
gagtgcctga tgtggctcag tttgtcctca ctgaggggaa ccctcgctgg gagcaaacac





481
atctgaccta caggattgaa aattacacgc cagatttgcc aagagcagat gtggaccatg





541
ccattgagaa agccttccaa ctctggagta atgtcacacc tctgacattc accaaggtct





601
ctgagggtca agcagacatc atgatatctt ttgtcagggg agatcatcgg gacaactctc





661
cttttgatgg acctggagga aatcttgctc atgcttttca accaggccca ggtattggag





721
gggatgctca ttttgatgaa gatgaaaggt ggaccaacaa tttcagagag tacaacttac





781
atcgtgttgc agctcatgaa ctcggccatt ctcttggact ctcccattct actgatatcg





841
gggctttgat gtaccctagc tacaccttca gtggtgatgt tcagctagct caggatgaca





901
ttgatggcat ccaagccata tatggacgtt cccaaaatcc tgtccagccc atcggcccac





961
aaaccccaaa agcgtgtgac agtaagctaa cctttgatgc tataactacg attcggggag





1021
aagtgatgtt ctttaaagac agattctaca tgcgcacaaa tcccttctac ccggaagttg





1081
agctcaattt catttctgtt ttctggccac aactgccaaa tgggcttgaa gctgcttacg





1141
aatttgccga cagagatgaa gtccggtttt tcaaagggaa taagtactgg gctgttcagg





1201
gacagaatgt gctacacgga taccccaagg acatctacag ctcctttggc ttccctagaa





1261
ctgtgaagca tatcgatgct gctctttctg aggaaaacac tggaaaaacc tacttctttg





1321
ttgctaacaa atactggagg tatgatgaat ataaacgatc tatggatcca ggttatccca





1381
aaatgatagc acatgacttt cctggaattg gccacaaagt tgatgcagtt ttcatgaaag





1441
atggattttt ctatttcttt catggaacaa gacaatacaa atttgatcct aaaacgaaga





1501
gaattttgac tctccagaaa gctaatagct ggttcaactg caggaaaaat tgaacattac





1561
taatttgaat ggaaaacaca tggtgtgagt ccaaagaagg tgttttcctg aagaactgtc





1621
tattttctca gtcattttta acctctagag tcactgatac acagaatata atcttattta





1681
tacctcagtt tgcatatttt tttactattt agaatgtagc cctttttgta ctgatataat





1741
ttagttccac aaatggtggg tacaaaaagt caagtttgtg gcttatggat tcatataggc





1801
cagagttgca aagatctttt ccagagtatg caactctgac gttgatccca gagagcagct





1861
tcagtgacaa acatatcctt tcaagacaga aagagacagg agacatgagt ctttgccgga





1921
ggaaaagcag ctcaagaaca catgtgcagt cactggtgtc accctggata ggcaagggat





1981
aactcttcta acacaaaata agtgttttat gtttggaata aagtcaacct tgtttctact





2041
gttttataca ctttcaaaaa aaaaaaaaaa aaaaaaaaaa a







The amino acid sequence of human MMP1 is provided by GenBank Accession No. NP_002412.1 and is shown below (SEQ ID NO: 8). The signal peptide is underlined.










(SEQ ID NO: 8)










  1

mhsfppllll lfwgvvshsf patletqeqd vdlvqkylek yynlkndqrq vekrrnsgpv







 61
veklkqmqef fglkvtgkpd aetlkvmkqp rcgvpdvaqf vltegnprwe qthltyrien





121
ytpdlpradv dhaiekafql wsnvtpltft kvsegqadim isfvrgdhrd nspfdgpggn





181
lahafqpgpg iggdahfded erwtnnfrey nlhrvaahel ghslglshst digalmypsy





241
tfsqdvqlaq ddidgiqaiy qrsqnpvapi gpqtpkacds kltfdaitti rgevmffkdr





301
fymrtnpfyp evelnfisvf wpqlpnglea ayefadrdev rffkgnkywa vqgqnvlhgy





361
pkdiyssfgf prtvkhidaa lseentgkty ffvankywry deykrsmdpg ypkmiahdfp





421
gighkvdavf mkdgffyffh gtrqykfdpk tkriltlqka nswfncrkn






The mRNA sequence of human vitronectin (VTN) is provided by GenBank Accession No. NM_000638.3 and is shown below (SEQ ID NO: 9).










(SEQ ID NO: 9)










1
gagcaaacag agcagcagaa aaggcagttc ctcttctcca gtgccctcct tccctgtctc






61
tgcctctccc tcccttcctc aggcatcaga gcggagactt cagggagacc agagcccagc





121
ttgccaggca ctgagctaga agccctgcca tggcacccct gagacccctt ctcatactgg





181
ccctgctggc atgggttgct ctggctgacc aagagtcatg caagggccgc tgcactgagg





241
gcttcaacgt ggacaagaag tgccagtgtg acgagctctg ctcttactac cagagctgct





301
gcacagacta tacggctgag tgcaagcccc aagtgactcg cggggatgtg ttcactatgc





361
eggaggatga gtacacggtc tatgacgatg gcgaggagaa aaacaatgcc actgtccatg





421
aacaggtggg gggcccctcc ctgacctctg acctccaggc ccagtccaaa gggaatcctg





481
agcagacacc tgttctgaaa cctgaggaag aggcccctgc gcctgaggtg ggcgcctcta





541
agcctgaggg gatagactca aggcctgaga cccttcatcc agggagacct cagcccccag





601
cagaggagga gctgtgcagt gggaagccct tcgacgcctt caccgacctc aagaacggtt





661
ccctctttgc cttccgaggg cagtactgct atgaactgga cgaaaaggca gtgaggcctg





721
ggtaccccaa gctcatccga gatgtctggg gcatcgaggg ccccatcgat gccgccttca





781
cccgcatcaa ctgtcagggg aagacctacc tcttcaaggg tagtcagtac tggcgctttg





841
aggatggtgt cctggaccct gattaccccc gaaatatctc tgacggcttc gatggcatcc





901
cggacaacgt ggatgcagcc ttggccctcc ctgcccatag ctacagtggc cgggagcggg





961
tctacttctt caaggggaaa cagtactggg agtaccagtt ccagcaccag cccagtcagg





1021
aggagtgtga aggcagctcc ctgtcggctg tgtttgaaca ctttgccatg atgcagcggg





1081
acagctggga ggacatcttc gagcttctct tctggggcag aacctctgct ggtaccagac





1141
agccccagtt cattagccgg gactggcacg gtgtgccagg gcaagtggac gcagccatgg





1201
ctggccgcat ctacatctca ggcatggcac cccgcccctc cttggccaag aaacaaaggt





1261
ttaggcatcg caaccgcaaa ggctaccgtt cacaacgagg ccacagccgt ggccgcaacc





1321
agaactcccg ccggccatcc cgcgccacgt ggctgtcctt gttctccagt gaggagagca





1381
acttgggagc caacaactat gatgactaca ggatggactg gcttgtgcct gccacctgtg





1441
aacccatcca gagtgtcttc ttcttctctg gagacaagta ctaccgagtc aatcttcgca





1501
cacggcgagt ggacactgtg gaccctccct acccacgctc catcgctcag tactggctgg





1561
gctgcccagc tcctggccat ctgtaggagt cagagcccac atggccgggc cctctgtagc





1621
tccctcctcc catctccttc ccccagccca ataaaggtcc cttagccccg agtttaaa







The amino acid sequence of human VTN is provided by GenBank Accession No. NP_000629.3 and is shown below (SEQ ID NO: 10). The predicted signal peptide is underlined.










(SEQ ID NO: 10)










  1

maplrpllil allawvalad qesckgrcte gfnvdkkcqc delcsyyqsc ctdytaeckp







 61
qvtrgdvftm pedeytvydd geeknnatvh eqvggpslts dlqaqskgnp eqtpvlkpee





121
eapapevgas kpegidsrpe tlhpgrpqpp aeeelcsgkp fdaftdlkng slfafrgqyc





181
yeldekavrp gypklirdvw giegpidaaf trincqgkty lfkgsqywrf edgvldpdyp





241
rnisdgfdgi pdnvdaalal pahsysgrer vyffkgkqyw eyqfqhqpsq eecegsslsa





301
vfehfammqr dswedifell fwgrtsagtr qpqfisrdwh gvpgqvdaam agriyisgma





361
prpslakkqr frhrnrkgyr sqrghsrgrn qnsrrpsrat wlslfssees nlgannyddy





421
rmdwlvpatc epiqsvfffs gdkyyrvnlr trrvdtvdpp yprsiaqywl gcpapghl






The mRNA sequence of human COL4A1 is provided by GenBank Accession No. NM_001845.4 and is shown below (SEQ ID NO: 11). The start and stop codons are bolded and underlined.










(SEQ ID NO: 11)










1
gcttggagcc gccgcacccg ggacggtgcg tagcgctgga agtccggcct tccgagagct






61
agctgtccgc cgcggccccc gcacgccggg cagccgtccc tcgccgcctc gggcgcgcca





121
ccatggggcc ccggctcagc gtctggctgc tgctgctgcc cgccgccctt ctgctccacg





181
aggagcacag ccgggccgct gcgaagggtg gctgtgctgg ctctggctgt ggcaaatgtg





241
actgccatgg agtgaaggga caaaagggtg aaagaggcct cccggggtta caaggtgtca





301
ttgggtttcc tggaatgcaa ggacctgagg ggccacaggg accaccagga caaaagggtg





361
atactggaga accaggacta cctggaacaa aagggacaag aggacctccg ggagcatctg





421
gctaccctgg aaacccagga cttcccggaa ttcctggcca agacggcccg ccaggccccc





481
caggtattcc aggatgcaat ggcacaaagg gggagagagg gccgctcggg cctcctggct





541
tgcctggttt cgctggaaat cccggaccac caggcttacc agggatgaag ggtgatccag





601
gtgagatact tggccatgtg cccgggatgc tgttgaaagg tgaaagagga tttcccggaa





661
tcccagggac tccaggccca ccaggactgc cagggcttca aggtcctgtt gggcctccag





721
gatttaccgg accaccaggt cccccaggcc ctcccggccc tccaggtgaa aagggacaaa





781
tgggcttaag ttttcaagga ccaaaaggtg acaagggtga ccaaggggtc agtgggcctc





841
caggagtacc aggacaagct caagttcaag aaaaaggaga cttcgccacc aagggagaaa





901
agggccaaaa aggtgaacct ggatttcagg ggatgccagg ggtcggagag aaaggtgaac





961
ccggaaaacc aggacccaga ggcaaacccg gaaaagatgg tgacaaaggg gaaaaaggga





1021
gtcccggttt tcctggtgaa cccgggtacc caggactcat aggccgccag ggcccgcagg





1081
gagaaaaggg tgaagcaggt cctcctggcc cacctggaat tgttataggc acaggacctt





1141
tgggagaaaa aggagagagg ggctaccctg gaactccggg gccaagagga gagccaggcc





1201
caaaaggttt cccaggacta ccaggccaac ccggacctcc aggcctccct gtacctgggc





1261
aggctggtgc ccctggcttc cctggtgaaa gaggagaaaa aggtgaccga ggatttcctg





1321
gtacatctct gccaggacca agtggaagag atgggctccc gggtcctcct ggttcccctg





1381
ggccccctgg gcagcctggc tacacaaatg gaattgtgga atgtcagccc ggacctccag





1441
gtgaccaggg tcctcctgga attccagggc agccaggatt tataggcgaa attggagaga





1501
aaggtcaaaa aggagagagt tgcctcatct gtgatataga cggatatcgg gggcctcccg





1561
ggccacaggg acccccggga gaaataggtt tcccagggca gccaggggcc aagggcgaca





1621
gaggtttgcc tggcagagat ggtgttgcag gagtgccagg ccctcaaggt acaccagggc





1681
tgataggcca gccaggagcc aagggggagc ctggtgagtt ttatttcgac ttgcggctca





1741
aaggtgacaa aggagaccca ggctttccag gacagcccgg catgacaggg agagcgggtt





1801
ctcctggaag agatggccat ccgggtcttc ctggccccaa gggctcgccg ggttctgtag





1861
gattgaaagg agagcgtggc ccccctggag gagttggatt cccaggcagt cgtggtgaca





1921
ccggcccccc tgggcctcca ggatatggtc ctgctggtcc cattggtgac aaaggacaag





1981
caggctttcc tggaggccct ggatccccag gcctgccagg tccaaagggt gaaccaggaa





2041
aaattgttcc tttaccaggc ccccctggag cagaaggact gccggggtcc ccaggcttcc





2101
caggtcccca aggagaccga ggctttcccg gaaccccagg aaggccaggc ctgccaggag





2161
agaagggcgc tgtgggccag ccaggcattg gatttccagg gccccccggc cccaaaggtg





2221
ttgacggctt acctggagac atggggccac cggggactcc aggtcgcccg ggatttaatg





2281
gcttacctgg gaacccaggt gtgcagggcc agaagggaga gcctggagtt ggtctaccgg





2341
gactcaaagg tttgccaggt cttcccggca ttcctggcac acccggggag aaggggagca





2401
ttggggtacc aggcgttcct ggagaacatg gagcgatcgg accccctggg cttcagggga





2461
tcagaggtga accgggacct cctggattgc caggctccgt ggggtctcca ggagttccag





2521
gaataggccc ccctggagct aggggtcccc ctggaggaca gggaccaccg gggttgtcag





2581
gccctcctgg aataaaagga gagaagggtt tccccggatt ccctggactg gacatgccgg





2641
gccctaaagg agataaaggg gctcaaggac tccctggcat aacgggacag tcggggctcc





2701
ctggccttcc tggacagcag ggggctcctg ggattcctgg gtttccaggt tccaagggag





2761
aaatgggcgt catggggacc cccgggcagc cgggctcacc aggaccagtg ggtgctcctg





2821
gattaccggg tgaaaaaggg gaccatggct ttccgggctc ctcaggaccc aggggagacc





2881
ctggcttgaa aggtgataag ggggatgtcg gtctccctgg caagcctggc tccatggata





2941
aggtggacat gggcagcatg aagggccaga aaggagacca aggagagaaa ggacaaattg





3001
gaccaattgg tgagaaggga tcccgaggag accctgggac cccaggagtg cctggaaagg





3061
acgggcaggc aggacagcct gggcagccag gacctaaagg tgatccaggt ataagtggaa





3121
ccccaggtgc tccaggactt ccgggaccaa aaggatctgt tggtggaatg ggcttgccag





3181
gaacacctgg agagaaaggt gtgcctggca tccctggccc acaaggttca cctggcttac





3241
ctggagacaa aggtgcaaaa ggagagaaag ggcaggcagg cccacctggc ataggcatcc





3301
cagggctgcg aggtgaaaag ggagatcaag ggatagcggg tttcccagga agccctggag





3361
agaagggaga aaaaggaagc attgggatcc caggaatgcc agggtcccca ggccttaaag





3421
ggtctcccgg gagtgttggc tatccaggaa gtcctgggct acctggagaa aaaggtgaca





3481
aaggcctccc aggattggat ggcatccctg gtgtcaaagg agaagcaggt cttcctggga





3541
ctcctggccc cacaggccca gctggccaga aaggggagcc aggcagtgat ggaatcccgg





3601
ggtcagcagg agagaagggt gaaccaggtc taccaggaag aggattccca gggtttccag





3661
gggccaaagg agacaaaggt tcaaagggtg aggtgggttt cccaggatta gccgggagcc





3721
caggaattcc tggatccaaa ggagagcaag gattcatggg tcctccgggg ccccagggac





3781
agccggggtt accgggatcc ccaggccatg ccacggaggg gcccaaagga gaccgcggac





3841
ctcagggcca gcctggcctg ccaggacttc cgggacccat ggggcctcca gggcttcctg





3901
ggattgatgg agttaaaggt gacaaaggaa atccaggctg gccaggagca cccggtgtcc





3961
cagggcccaa gggagaccct ggattccagg gcatgcctgg tattggtggc tctccaggaa





4021
tcacaggctc taagggtgat atggggcctc caggagttcc aggatttcaa ggtccaaaag





4081
gtcttcctgg cctccaggga attaaaggtg atcaaggcga tcaaggcgtc ccgggagcta





4141
aaggtctccc gggtcctcct ggccccccag gtccttacga catcatcaaa ggggagcccg





4201
ggctccctgg tcctgagggc cccccagggc tgaaagggct tcagggactg ccaggcccga





4261
aaggccagca aggtgttaca ggattggtgg gtatacctgg acctccaggt attcctgggt





4321
ttgacggtgc ccctggccag aaaggagaga tgggacctgc cgggcctact ggtccaagag





4381
gatttccagg tccaccaggc cccgatgggt tgccaggatc catggggccc ccaggcaccc





4441
catctgttga tcacggcttc cttgtgacca ggcatagtca aacaatagat gacccacagt





4501
gtccttctgg gaccaaaatt ctttaccacg ggtactcttt gctctacgtg caaggcaatg





4561
aacgggccca tggccaggac ttgggcacgg ccggcagctg cctgcgcaag ttcagcacaa





4621
tgcccttcct gttctgcaat attaacaacg tgtgcaactt tgcatcacga aatgactact





4681
cgtactggct gtccacccct gagcccatgc ccatgtcaat ggcacccatc acgggggaaa





4741
acataagacc atttattagt aggtgtgctg tgtgtgaggc gcctgccatg gtgatggccg





4801
tgcacagcca gaccattcag atcccaccgt gccccagcgg gtggtcctcg ctgtggatcg





4861
gctactcttt tgtgatgcac accagcgctg gtgcagaagg ctctggccaa gccctggcgt





4921
cccccggctc ctgcctggag gagtttagaa gtgcgccatt catcgagtgt cacggccgtg





4981
ggacctgcaa ttactacgca aacgcttaca gcttttggct cgccaccata gagaggagcg





5041
agatgttcaa gaagcctacg ccgtccacct tgaaggcagg ggagctgcgc acgcacgtca





5101
gccgctgcca agtctgtatg agaagaacat aatgaagcct gactcagcta atgtcacaac





5161
atggtgctac ttcttcttct ttttgttaac agcaacgaac cctagaaata tatcctgtgt





5221
acctcactgt ccaatatgaa aaccgtaaag tgccttatag gaatttgcgt aactaacaca





5281
ccctgcttca ttgacctcta cttgctgaag gagaaaaaga cagcgataag ctttcaatag





5341
tggcatacca aatggcactt ttgatgaaat aaaatatcaa tattttctgc aatccaatgc





5401
actgatgtgt gaagtgagaa ctccatcaga aaaccaaagg gtgctaggag gtgtgggtgc





5461
cttccatact gtttgcccat tttcattctt gtattataat taattttcta cccccagaga





5521
taaatgtttg tttatatcac tgtctagctg tttcaaaatt taggtccctt ggtctgtaca





5581
aataatagca atgtaaaaat ggttttttga acctccaaat ggaattacag actcagtagc





5641
catatcttcc aaccccccag tataaatttc tgtctttctg ctatgtgtgg tactttgcag





5701
ctgcttttgc agaaatcaca attttcctgt ggaataaaga tggtccaaaa atagtcaaaa





5761
attaaatata tatatatatt agtaatttat atagatgtca gcaattaggc agatcaaggt





5821
ttagtttaac ttccactgtt aaaataaagc ttacatagtt ttcttccttt gaaagactgt





5881
gctgtccttt aacataggtt tttaaagact aggatattga atgtgaaaca tccgttttca





5941
ttgttcactt ctaaaccaaa aattatgtgt tgccaaaacc aaacccaggt tcatgaatat





6001
ggtgtctatt atagtgaaac atgtactttg agcttattgt ttttattctg tattaaatat





6061
tttcagggtt ttaaacacta atcacaaact gaatgacttg acttcaaaag caacaacctt





6121
aaaggccgtc atttcattag tattcctcat tctgcatcct ggcttgaaaa acagctctgt





6181
tgaatcacag tatcagtatt ttcacacgta agcacattcg ggccatttcc gtggtttctc





6241
atgagctgtg ttcacagacc tcagcagggc atcgcatgga ccgcaggagg gcagattcgg





6301
accactaggc ctgaaatgac atttcactaa aagtctccaa aacatttcta agactactaa





6361
ggccttttat gtaatttctt taaatgtgta tttcttaaga attcaaattt gtaataaaac





6421
tatttgtata aaaattaagc ttttattaat ttgttgctag tattgccaca gacgcattaa





6481
aagaaactta ctgcacaagc tgctaataaa tttgtaagct ttgcatacct taaaaaaaaa





6541
aaaaaaaaa







The amino acid sequence of human COL4A1 is provided by GenBank Accession No. NP_001836.2 and is shown below (SEQ ID NO: 12). The signal peptide is underlined.










(SEQ ID NO: 12)










1

mgprlsvwll llpaalllhe ehsraaakgg cagsgcgkcd chgvkgqkge rglpglqgvi







61
gfpgmqgpeg pqgppgqkgd tgepglpgtk gtrgppgasg ypgnpglpgi pgqdgppgpp





121
gipgengtkg ergplgppgl pgfagnpgpp glpgmkgdpg eilghvpgml lkgergfpgi





181
pgtpgppglp glqgpvgppg ftgppgppgp pgppgekgqm glsfqgpkgd kgdqgvsgpp





241
gvpgqaqvqe kgdfatkgek gqkgepgfqg mpgvgekgep gkpgprgkpg kdgdkgekgs





301
pgfpgepgyp gligrqgpqg ekgeagppgp pgivigtgpl gekgergypg tpgprgepgp





361
kgfpglpgqp gppglpvpgq agapgfpger gekgdrgfpg tslpgpsgrd glpgppgspg





421
ppgqpgytng ivecqpgppg dqgppgipgq pgfigeigek gqkgesclic didgyrgppg





481
pqgppgeigf pgqpgakgdr glpgrdgvag vpgpqgtpgl igqpgakgep gefyfdlrlk





541
gdkgdpgfpg qpgmtgrags pgrdghpglp gpkgspgsvg lkgergppgg vgfpgsrgdt





601
gppgppgygp agpigdkgqa gfpggpgspg lpgpkgepgk ivplpgppga eglpgspgfp





661
gpqgdrgfpg tpgrpglpge kgavgqpgig fpgppgpkgv dglpgdmgpp gtpgrpgfng





721
lpgnpgvqgq kgepgvglpg lkglpglpgi pgtpgekgsi gvpgvpgehg aigppglqgi





781
rgepgppglp gsvgspgvpg igppgargpp ggqgppglsg ppgikgekgf pgfpgldmpg





841
pkgdkgaqgl pgitgqsglp glpgqqgapg ipgfpgskge mgvmgtpgqp gspgpvgapg





901
lpgekgdhgf pgssgprgdp glkgdkgdvg lpgkpgsmdk vdmgsmkgqk gdqgekgqig





961
pigekgsrgd pgtpgvpgkd gqagqpgqpg pkgdpgisgt pgapglpgpk gsvggmglpg





1021
tpgekgvpgi pgpqgspglp gdkgakgekg qagppgigip glrgekgdqg iagfpgspge





1081
kgekgsigip gmpgspglkg spgsvgypgs pglpgekgdk glpgldgipg vkgeaglpgt





1141
pgptgpagqk gepgsdgipg sagekgepgl pgrgfpgfpg akgdkgskge vgfpglagsp





1201
gipgskgeqg fmgppgpqgq pglpgspgha tegpkgdrgp qgqpglpglp gpmgppglpg





1261
idgvkgdkgn pgwpgapgvp gpkgdpgfqg mpgiggspgi tgskgdmgpp gvpgfqgpkg





1321
lpglqgikgd qgdqgvpgak glpgppgppg pydiikgepg lpgpegppgl kglqglpgpk





1381
gqqgvtglvg ipgppgipgf dgapgqkgem gpagptgprg fpgppgpdgl pgsmgppgtp





1441
svdhgflvtr hsqtiddpqc psgtkilyhg ysllyvqgne rahgqdlgta gsclrkfstm





1501
pflfcninnv cnfasrndys ywlstpepmp msmapitgen irpfisrcav ceapamvmav





1561
hsqtiqippc psgwsslwig ysfvmhtsag aegsgqalas pgscleefrs apfiechgrg





1621
tcnyyanays fwlatierse mfkkptpstl kagelrthvs rcqvemrrt 






The mRNA sequence of human COL4A3 is provided by GenBank Accession No. NM_000091.4 and is shown below (SEQ ID NO: 13). The start and stop codons are bolded and underlined.










(SEQ ID NO: 13)










1
gggagggacg aaccgcgcga ccgagcccta caaaacccgc cccggccgag tggcgaggcg






61
agctttccag ccgggctccc agagccgcgc tgcgcaggag acgcggtggc ctgagagcct





121
gagggtcccc ggactcgccc aggctctgag cgcgcgccca ccatgagcgc ccggaccgcc





181
cccaggccgc aggtgctcct gctgccgctc ctgctggtgc tcctggcggc ggcgcccgca





241
gccagcaagg gttgtgtctg taaagacaaa ggccagtgct tctgtgacgg ggccaaaggg





301
gagaaggggg agaagggctt tcctggaccc cccggttctc ctggccagaa aggattcaca





361
ggtcctgaag gcttgcctgg accgcaggga cccaagggct ttccaggact tccaggactc





421
acgggttcca aaggtgtaag gggaataagt ggattgccag gattttctgg ttctcctgga





481
cttccaggca ccccaggcaa taccgggcct tacggacttg tcggtgtacc aggatgcagt





541
ggttctaagg gtgagcaggg gtttccagga ctcccaggga cactgggcta cccagggatc





601
ccgggtgctg ctggtttgaa aggacaaaag ggtgctcctg ctaaagaaga agatatagaa





661
cttgatgcaa aaggcgaccc cgggttgcca ggggctccag gaccccaggg tttgccaggc





721
cctccaggtt ttcctgggcc tgttggccca cctggtcctc cgggattctt tggctttcca





781
ggagccatgg gacctagagg acctaagggt cacatgggtg aaagagtgat aggacataaa





841
ggagagcggg gtgtgaaagg gttaacagga cccccgggac caccaggaac agttattgtg





901
accctaactg gcccagataa cagaacggac ctcaaggggg aaaagggaga caagggagca





961
atgggcgagc ctggacctcc tggaccctca ggactgcctg gagaatcata tggatctgaa





1021
aagggtgctc ctggagaccc tggcctgcag ggaaaacccg gaaaagatgg tgttcctggc





1081
ttccctggaa gtgagggagt caagggcaac aggggtttcc ctgggttaat gggtgaagat





1141
ggcattaagg gacagaaagg ggacattggc cctccaggat ttcgtggtcc aacagaatat





1201
tatgacacat accaggaaaa gggagatgaa ggcactccag gcccaccagg gcccagagga





1261
gctcgtggcc cacaaggtcc cagtggtccc cccggagttc ctggaagtcc tggatcatca





1321
aggcctggcc tcagaggagc ccctggatgg ccaggcctga aaggaagtaa aggggaacga





1381
ggccgcccag gaaaggatgc catggggact cctgggtccc caggttgtgc tggttcacca





1441
ggtcttccag gatcaccggg acctccagga ccgccaggtg acatcgtttt tcgcaagggt





1501
ccacctggag atcacggact gccaggctat ctagggtctc caggaatccc aggagttgat





1561
gggcccaaag gagaaccagg cctcctgtgt acacagtgcc cttatatccc agggcctccc





1621
ggtctcccag gattgccagg gttacatggt gtaaaaggaa tcccaggaag acaaggcgca





1681
gctggcttga aaggaagccc agggtcccca ggaaatacag gtcttccagg atttccaggt





1741
ttcccaggtg cccagggtga cccaggactt aaaggagaaa aaggtgaaac acttcagcct





1801
gaggggcaag tgggtgtccc aggtgacccg gggctcagag gccaacctgg gagaaagggc





1861
ttggatggaa ttcctggaac tccgggagtg aaaggattac caggacctaa aggcgaactg





1921
gctctgagtg gtgagaaagg ggaccaaggt cctccagggg atcctggctc ccctgggtcc





1981
ccaggacctg caggaccagc tggaccacct ggctacggac cccaaggaga acctggtctc





2041
cagggcacgc aaggagttcc tggagccccc ggaccacccg gagaagccgg ccctagggga





2101
gagctcagtg tttcaacacc agttccaggc ccaccaggac ctccagggcc ccctggccat





2161
cctggccccc aaggtccacc tggtatccct ggatccctgg ggaaatgtgg agatcctggt





2221
cttccagggc ctgatggtga accaggaatt ccaggaattg gatttcctgg gcctcctgga





2281
cctaagggag accaaggttt tccaggtaca aaaggatcac tgggttgtcc tggaaaaatg





2341
ggagagcctg ggttacctgg aaagccaggc ctcccaggag ccaagggaga accagcagta





2401
gccatgcctg gaggaccagg aacaccaggt tttccaggag aaagaggcaa ttctggggaa





2461
catggagaaa ttggactccc tggacttcca ggtctccctg gaactccagg aaatgaaggg





2521
cttgatggac cacgaggaga tccagggcag cctggaccac ctggagaaca aggaccccca





2581
ggaaggtgca tagagggtcc caggggagcc caaggacttc caggcttaaa tggattgaaa





2641
gggcaacaag gcagaagagg taaaacgggg ccaaagggag acccaggaat tccaggcttg





2701
gatagatcag gatttcctgg agaaactgga tcaccaggaa ttccaggtca tcaaggtgaa





2761
atgggaccac tgggtcaaag aggatatcca ggaaatccgg gaattttagg gccaccaggt





2821
gaagatggag tgattgggat gatgggcttt cctggagcca ttggccctcc agggccccct





2881
gggaacccag gcacaccagg gcagaggggg agccctggaa ttccaggagt aaagggccag





2941
agaggaaccc caggagccaa gggggaacaa ggagataaag gaaatcccgg gccttcagag





3001
atatcccacg taatagggga caaaggagaa ccaggtctca aaggattcgc aggaaatcca





3061
ggtgagaaag gaaacagagg cgttccaggg atgccaggtt taaagggcct caaaggacta





3121
cccggaccag caggaccacc aggccccaga ggagatttgg gcagcactgg gaatcctgga





3181
gaaccaggac tgcgtggtat accaggaagc atggggaaca tgggcatgcc aggttctaaa





3241
ggaaaaaggg gaactttggg attcccaggt cgagcaggaa gaccaggcct cccaggtatt





3301
catggtctcc agggagataa gggagagcca ggttattcag aaggtacaag gccaggacca





3361
ccgggaccaa cgggggatcc aggactgccg ggtgatatgg gaaagaaagg agaaatgggg





3421
caacctggcc cacctggaca tttggggcct gctggacctg agggagcccc tggaagtcct





3481
ggaagtcctg gcctcccagg aaagccaggt cctcatggtg atttgggttt taaaggaatc





3541
aaaggcctcc tgggccctcc aggaatcaga ggccctccag gtcttccagg atttccagga





3601
tctcctggac caatgggtat aagaggtgac caaggacgtg atggaattcc tggtccagcc





3661
ggagaaaagg gagaaacggg tttattgagg gcccctccag gcccaagagg gaaccctggt





3721
gctcaaggag ccaaaggaga caggggagcc ccaggttttc ctggcctccc gggcagaaaa





3781
ggggccatgg gagatgctgg acctcgagga cccacaggca tagaaggatt cccagggcca





3841
ccaggtctgc ccggtgcaat tatccctggc cagacaggaa atcgtggtcc accaggctca





3901
agaggaagcc caggtgcgcc tggtccccct ggacctccag ggagtcatgt aataggcata





3961
aaaggagaca aagggtctat gggccaccct ggcccaaaag gtccacctgg aactgcagga





4021
gacatgggac caccaggtcg tctgggagca ccaggtactc caggtcttcc aggacccaga





4081
ggtgatcctg gattccaggg gtttccaggc gtgaaaggag aaaagggtaa tcctggattt





4141
ctaggatcca ttggacctcc aggaccaatt gggccaaaag gaccacctgg tgtacgtgga





4201
gaccctggca cacttaagat tatctccctt ccaggaagcc cagggccacc tggcacacct





4261
ggagaaccag ggatgcaggg agaacctggg ccaccagggc cacctggaaa cctaggaccc





4321
tgtgggccaa gaggtaagcc aggcaaggat ggaaaaccag gaactcctgg accagctgga





4381
gaaaaaggca acaaaggttc taaaggagag ccaggaccag ctggatcaga tggattgcca





4441
ggtttgaaag gaaaacgtgg agacagtgga tcacctgcaa cctggacaac gagaggcttt





4501
gtcttcaccc gacacagtca aaccacagca attccttcat gtccagaggg gacagtgcca





4561
ctctacagtg ggttttcttt tctttttgta caaggaaatc aacgagccca cggacaagac





4621
cttggaactc ttggcagctg cctgcagcga tttaccacaa tgccattctt attctgcaat





4681
gtcaatgatg tatgtaattt tgcatctcga aatgattatt catactggct gtcaacacca





4741
gctctgatgc caatgaacat ggctcccatt actggcagag cccttgagcc ttatataagc





4801
agatgcactg tttgtgaagg tcctgcgatc gccatagccg ttcacagcca aaccactgac





4861
attcctccat gtcctcacgg ctggatttct ctctggaaag gattttcatt catcatgttc





4921
acaagtgcag gttctgaggg caccgggcaa gcactggcct cccctggctc ctgcctggaa





4981
gaattccgag ccagcccatt tctagaatgt catggaagag gaacgtgcaa ctactattca





5041
aattcctaca gtttctggct ggcttcatta aacccagaaa gaatgttcag aaagcctatt





5101
ccatcaactg tgaaagctgg ggaattagaa aaaataataa gtcgctgtca ggtgtgcatg





5161
aagaaaagac actgaagcta aaaaagacag cagaactgct atttttcatc ctaaagaaca





5221
aagtaatgac agaacatgct gttatttagg tatttttctt taaccaaaca atattgctcc





5281
atgatgactt agtacaaagt ttcaatttgt ttccccacaa aacaaagcaa ttctttcaag





5341
tcagttctgt gatctgggtc tctaatctgt gctgtttcaa agttctctgt ggcaaagcag





5401
caactattca caaaatatca ccaaaaacct attccactta catccaaggc actgtcacta





5461
cggtgattgt atgaagtttg aatgctgcaa gttatgaaat atttggcccg ctggattccc





5521
acatttgtct tctttctgtc tttaagactc agggaggeta aatcagtgtt tgattgcccc





5581
gccaaccctt cctgaaactt cagaccctgg gtaggggaag agaagggggc atgtggtatc





5641
ctggagcatt gtgtatagaa ctggattttc agacctgctg aggaccgtaa ggcctgatgg





5701
aacacagaac tgaactgagg ttcatggatt ttccaggact gtttcaaaca tgcccattac





5761
taacggcaaa agggggattc cctgatggaa ccataatacc ettggaaata ctgtatggtt





5821
ttgttttgtt ttgttggttt ttaaagattt ttgtttgttt attgaattca tttcactgta





5881
gctctaaaat ctgcttgtat tccaagcata taaaattttc ccccttagtg aattagtttt





5941
aaaatgatat tgttatatac atactatgaa atatgtataa ctttaacttc tgttttacca





6001
gcatacccac acaaataaca agaatactac ttatgaaatg tgcactttat cctcattcca





6061
taaatgtcgg tgcatacctt atgtaaggga gcagttcaat aatccatgaa agaacttaag





6121
gcatttgttg gtttatcaga ctcggaatct attttctcat tgctctgaat atgtcatcac





6181
tctaggtttt acagatttat tcctttgtta cttctctaat tcttcctttg taaaaaaaaa





6241
aaaaagcaac actttttatg ttatatgttg ttcttacaaa ccatactgaa agagtccatt





6301
gtttaaaaat cttaatgtat caaactgtat aacttggccg ctgtatgtct taaaacctgc





6361
ttttcaatgt gttgatacat tcccaaggtt acttaattca acttaactat catcttattc





6421
agcaccaagc atgtcccagg cactgtacta acctacagag atgctaagag aaaaaaaaga





6481
cttgtttctg atctaatatc ccagaaaaag taactcattg ctctgttaat aatctcacat





6541
atacaagtag cttccctccc ctctagtttt ttcttccttt tcactgctgt tatatttcat





6601
catgataatt cagcaggccc aagtaaaggt taaaaataag gtctatgcct agggaaactc





6661
agggcttcta gtttctctta gaaaagctaa gagaagataa ggtctgaata atagcagaaa





6721
aaccaacatc tacaaaacat taaactagtg ttatacttga tgataacact atttgatgag





6781
tcttagagtc cagacacaaa gagacaaagc tttgaagatg ctttttgatc tacctaggtg





6841
gagttggtgg tgctgatatt taaattcagg ctactgcttc aatctcaatt gctttgtaag





6901
tgaaaaacat gacccagagg acagcacaga ctatggccat ggctcacatg gtttacatcc





6961
ttcactgctc acgtgtttgc tgtcaagcca tttttacatc taaactaaga tgtgcagcat





7021
ttcacttatt tagattcact taacaaacaa atttttctgc tttaaaaatg tcttattgtc





7081
ccaagtgtac tatagcggca tatagagcta gctaatctct acaaaccctc tgtaggccag





7141
tagttctcaa agtgtggtct ctggaagagc agtatcagca tcatctggga acttgtcaca





7201
gatgeagatt ctagggacca ctccagacct acacaatcag aaactcttgg gggagggccc





7261
gaaatatcta tgttttacca agcccaccac atgattctga tgtactctaa atactgagaa





7321
aacctgttct agacaaatac ccaagcaaca actccgcagg cagttaccaa gtacggctgg





7381
ctacaactgc tccatccgtg cctcttttta aagttcaaac tcacaggtga ctctaaggtt





7441
atctactttt actcataagt aaaagcccta gactggtgct aatgtcaaac cactggcctc





7501
cactcaggcc tccatcttct catgccctct taccagtatt taacttctga ggaagacaag





7561
tgatgctaaa acctgaaatt ccaatgaagc catatgaaca gctgttcagt tgcacttcta





7621
agactttact tagcagtaaa ttatagctca tgtgcattat tttccagata acttagctta





7681
tgagtagctt atacaattat gaagatttaa tattacagat aaaatgtaaa ctgtttcttt





7741
aaaattgggg cttcaacttt ggaatttcac agcgtgctaa aataacagat ttctcagaag





7801
tctttcagca agataaacat tattaagtaa cttatttatg aaagtattaa aatgcttaca





7861
tttgaacttg atggctaact tacaaagatt ctctatgtat caaatgtaac ttactgcgac





7921
taaacttaat ttaatattta ctctataacc aaatgaaata tatttaaaat atattgaata





7981
ttttatattg ttatatcctg acaagattat aatattttaa tgtactaata tttctgtaat





8041
tatatctaaa atattatttt attatattgc ctaagaataa acatttgtta aattggaaaa





8101
aaaaaaaaaa aaaa







The protein sequence of human COL4A3 is provided by GenBank Accession No. NP_000082.2 and is shown below (SEQ ID NO: 14). The predicted signal peptide is underlined.










(SEQ ID NO: 14)










1

msartaprpq vlllplllvl laaapaaskg cvckdkgqcf cdgakgekge kgfpgppgsp







61
gqkgftgpeg ipgpqgpkgf pglpgltgsk gvrgisglpg fsgspglpgt pgntgpyglv





121
gvpgcsgskg eqgfpglpgt Igypgipgaa glkgqkgapa keedieldak gdpglpgapg





181
pqglpgppgf pgpvgppgpp gffgfpgamg prgpkghmge rvighkgerg vkgltgppgp





241
pgtvivtltg pdnrtdlkge kgdkgamgep gppgpsgipg esygsekgap gdpglqgkpg





301
kdgvpgfpgs egvkgnrgfp glmgedgikg qkgdigppgf rgpteyydty qekgdegtpg





361
ppgprgargp qgpsgppgvp gspgssrpgl rgapgwpglk gskgergrpg kdamgtpgsp





421
gcagspglpg spgppgppgd ivfrkgppgd hglpgylgsp gipgvdgpkg epgllctqcp





481
yipgppglpg lpglhgvkgi pgrqgaaglk gspgspgntg ipgfpgfpga qgdpglkgek





541
getlqpegqv gvpgdpglrg qpgrkgldgi pgtpgvkglp gpkgelalsg ekgdqgppgd





601
pgspgspgpa gpagppgygp qgepglqgtq gvpgapgppg eagprgelsv stpvpgppgp





661
pgppghpgpq gppgipgslg kcgdpglpgp dgepgipgig fpgppgpkgd qgfpgtkgsl





721
gcpgkmgepg lpgkpglpga kgepavampg gpgtpgfpge rgnsgehgei glpglpglpg





781
tpgnegldgp rgdpgqpgpp geqgppgrci egprgaqglp glnglkgqqg rrgktgpkgd





841
pgipgldrsg fpgetgspgi pghqgemgpl gqrgypgnpg ilgppgedgv igmmgfpgai





901
gppgppgnpg tpgqrgspgi pgvkgqrgtp gakgeqgdkg npgpseishv igdkgepglk





961
gfagnpgekg nrgvpgmpgl kglkglpgpa gppgprgdlg stgnpgepgl rgipgsmgnm





1021
gmpgskgkrg tigfpgragr pglpgihglq gdkgepgyse gtrpgppgpt gdpglpgdmg





1081
kkgemgqpgp pghlgpagpe gapgspgspg ipgkpgphgd lgfkgikgll gppgirgppg





1141
lpgfpgspgp mgirgdqgrd gipgpagekg etgllrappg prgnpgaqga kgdrgapgfp





1201
glpgrkgamg dagprgptgi egfpgppglp gaiipgqtgn rgppgsrgsp gapgppgppg





1261
shvigikgdk gsmghpgpkg ppgtagdmgp pgrigapgtp glpgprgdpg fqgfpgvkge





1321
kgnpgflgsi gppgpigpkg ppgvrgdpgt ikiislpgsp gppgtpgepg mqgepgppgp





1381
pgnigpcgpr gkpgkdgkpg tpgpagekgn kgskgepgpa gsdglpglkg krgdsgspat





1441
wttrgfvftr hsqttaipsc pegtvplysg fsfifvqgnq rahgqdlgtl gsclqrfttm





1501
pflfcnvndv cnfasrndys ywlstpalmp mnmapitgra lepyisrctv cegpaiaiav





1561
hsqttdippc phgwislwkg fsfimftsag segtgqalas pgscleefra spflechgrg





1621
tcnyysnsys fwlaslnper mfrkpipstv kagelekiis rcqvcmkkrh 






The mRNA sequence of human COL5A3 is provided by GenBank Accession No. NM_015719.3 and is shown below (SEQ ID NO: 15). The start and stop codons are bolded and underlined.










(SEQ ID NO: 15)










1
gcgagtgact gcaccgagcc cgagaagtcg ccgcgccccg cagccgcccc gactggttcc






61
ccgccttgcc cgtgggcccc gccgggatgg ggaaccgccg ggacctgggc cagccgcggg





121
ccggtctctg cctgctcctg gccgcgctgc agcttctgcc ggggacgcag gccgatcctg





181
tggatgtcct gaaggccctg ggtgtgcagg gaggccaggc tggggtcccc gaggggcctg





241
gcttctgtcc ccagaggact ccagagggtg accgggcatt cagaattggc caggccagca





301
cgctcggcat ccccacgtgg gaactctttc cagaaggcca ctttcctgag aacttctcct





361
tgctgatcac cttgcgggga cagccagcca atcagtctgt cctgctgtcc atttatgatg





421
aaaggggtgc ccggcagttg ggcctggcac tggggccagc gctgggtctc ctaggtgacc





481
ccttccgccc cctcccccag caggtcaacc tcacagatgg caggtggcac cgtgtggccg





541
tcagcataga tggtgagatg gtgaccctgg tagctgactg tgaagctcag ccccctgttt





601
tgggccatgg cccccgcttc atcagcatag ctggactcac tgtgctgggg acccaggacc





661
ttggggaaaa gactttcgag ggagacattc aggagctgct gataagccca gatcctcagg





721
ctgccttcca ggcttgtgag cggtacctcc ccgactgtga caacctggca ccggcagcca





781
cagtggctcc ccagggtgaa ccagaaaccc ctcgtcctcg gcggaagggg aagggaaaag





841
ggaggaagaa agggcgaggt cgcaagggga agggcaggaa aaagaacaag gaaatttgga





901
cctcaagtcc acctcctgac tccgcagaga accagacctc cactgacatc cccaagacag





961
agactccagc tccaaatctg cctccgaccc ccacgccttt ggtcgtcacc tccactgtga





1021
ctactggact caatgccacg atcctagaga ggagcttgga ccctgacagt ggaaccgagc





1081
tggggaccct ggagaccaag gcagccaggg aggatgaaga aggagatgat tccaccatgg





1141
gccctgactt ccgggcagca gaatatccat ctcggactca gttccagatc tttcctggtg





1201
ctggagagaa aggagcaaaa ggagagcccg cagtgattga aaaggggcag cagtttgagg





1261
gacctccagg agccccagga ccccaagggg tggttggccc ctcaggccct cccggccccc





1321
caggattccc tggcgaccct ggtccaccgg gccctgctgg cctcccagga atccccggca





1381
ttgatgggat ccgaggccca ccgggcactg tgatcatgat gccgttccag tttgcaggcg





1441
gctcctttaa aggcccccca gtctcattcc agcaggccca ggctcaggca gttctgcagc





1501
agactcagct ctctatgaaa ggcccccctg gtccagtggg gctcactggg cgcccaggcc





1561
ctgtgggtct ccccgggcat ccaggtctga aaggagagga gggagcagaa gggccacagg





1621
gtccccgagg cctgcaggga cctcatggac cccctggccg agtgggcaag atgggccgcc





1681
ctggagcaga tggagctcgg ggcctcccag gggacactgg acctaagggt gatcgtggct





1741
tcgatggcct ccctgggctg cctggtgaga agggccaaag gggtgacttt ggccatgtgg





1801
ggcaacccgg tcccccagga gaggatggtg agaggggagc agagggacct ccagggccca





1861
ctggccaggc tggggagccg ggtccacgag gactgcttgg ccccagaggc tctcctggcc





1921
ccacgggtcg cccgggtgtg actggaattg atggtgctcc tggtgccaaa ggcaatgtgg





1981
gtcctccagg agaaccaggc cctccgggac agcagggaaa ccatgggtcc cagggactcc





2041
ccggtcccca gggactcatt ggcactcctg gggagaaggg tccccctgga aacccaggaa





2101
ttccaggcct cccaggatcc gatggccctc tgggtcaccc aggacatgag ggccccacgg





2161
gagagaaagg ggctcagggt ccaccagggt cggcaggccc tccgggctat cctggacctc





2221
ggggagtgaa gggcacttca ggcaaccggg gcctccaggg ggagaaaggc gagaagggag





2281
aggacggctt cccaggcttc aagggcgatg tggggctcaa aggtgatcag gggaaacccg





2341
gagctccagg tccccgggga gaggatggtc ctgaggggcc gaaggggcag gcggggcagg





2401
ctggcgagga ggggccccca ggctcagctg gggagaaggg caagcttggg gtgccaggcc





2461
tcccaggtta tccaggacgc cctggaccta agggatctat tggatttccc ggtcccctgg





2521
gacccatagg agagaaaggg aagtcgggaa agacagggca gccaggcctg gaaggagagc





2581
ggggaccacc aggttcccgt ggagagaggg ggcaaccggg tgccacaggg caaccaggcc





2641
ccaagggcga tgtgggccag gatggagccc ctgggatccc tggagaaaag ggcctccctg





2701
gtctgcaagg ccctccagga ttccctgggc caaagggccc ccctggtcac caaggtaaag





2761
atgggcgacc agggcaccct ggacagagag gagaactggg cttccaaggt cagacaggcc





2821
cgcctggacc agctggtgtc ttaggccctc agggaaagac aggagaagtg ggacctctag





2881
gtgaaagggg gcctccaggc ccccctggac ctcctggtga acaaggtctt cctggcctgg





2941
aaggcagaga gggggccaag ggggaactgg gaccaccagg accccttggg aaagaagggc





3001
cagctggact caggggcttt cccggcccca aagggggccc tggggacccg ggacctactg





3061
gcttaaaggg tgataagggc cccccagggc ccgtgggggc caatggctcc cctggtgagc





3121
gcggtccttt gggcccagca ggaggcattg gacttcctgg ccaaagtggc agcgaaggcc





3181
ccgttggccc tgcaggcaag aaggggtccc ggggagaacg tggcccccct ggccccactg





3241
gcaaagatgg gatcccaggg cccctggggc ctctgggacc ccctggagct gctgggcctt





3301
ctggcgagga aggggacaag ggggatgtgg gtgcccccgg acacaagggg agtaaaggcg





3361
ataaaggaga cgcgggccca cctggacaac cagggatacg gggtcctgca ggacacccag





3421
gtcccccggg agcagacggg gctcaggggc gccggggacc cccaggcctc tttgggcaga





3481
aaggagatga cggagtcaga ggctttgtgg gggtgattgg ccctcctgga ctgcaggggc





3541
tgccaggccc tccgggagag aaaggggagg tcggagacgt cgggtccatg ggtccccatg





3601
gagctccagg tcctcggggt ccccaaggcc ccactggatc agagggcact ccagggctgc





3661
ctggaggagt tggtcagcca ggcgccgtgg gtgagaaggg tgagcgaggg gacgctggag





3721
acccagggcc tccaggagcc ccaggcatcc cggggcccaa gggagacatt ggtgaaaagg





3781
gggactcagg cccatctgga gctgctggac ccccaggcaa gaaaggtccc cctggagagg





3841
atggagccaa agggagcgtg ggccccacgg ggctgcccgg agatctaggg cccccaggag





3901
accctggagt ttcaggcata gatggttccc caggggagaa gggagaccct ggtgatgttg





3961
ggggaccggg tccgcctgga gcttctgggg agcccggcgc ccccgggccc cccggcaaga





4021
ggggtccttc aggccacatg ggtcgagaag gcagagaagg ggagaaaggt gccaaggggg





4081
agccaggtcc tgatgggccc ccagggagga cgggtccaat gggggctaga gggccccctg





4141
gacgtgtggg gcctgagggt cttcgaggga tccctggccc tgtgggtgaa ccaggcctcc





4201
tgggagcccc tggacagatg ggccctcctg gccccctggg gccctctggc ctcccagggc





4261
tgaagggaga cactggcccc aagggggaaa agggccacat tggattgatc ggtctcattg





4321
gccccccggg agaagctggt gagaaaggag atcaggggtt gccaggcgtg cagggacccc





4381
ctggtcccaa gggagaccct ggtccccctg gtcccattgg ctctctgggc caccctgggc





4441
ccccaggtgt ggcgggccct ctaggacaga aaggctcaaa agggtctccg gggtccatgg





4501
gcccccgtgg agacactgga cctgcaggcc caccaggccc cccgggtgcc cctgccgagc





4561
tgcatgggct gcgcaggcgc cggcgcttcg tcccagtccc gcttccagtc gtggagggcg





4621
gcctggagga ggtgctggcc tcgctcacat cgctgagctt ggagctggag cagctgcggc





4681
gtcctcccgg cactgcggag cgcccgggcc tcgtgtgcca cgagctgcac cgcaaccacc





4741
cgcacctgcc tgatggggaa tactggattg accccaacca gggctgcgcg cgggactcgt





4801
tcagggtttt ttgcaacttc acggcgggag gagagacctg cctctatccc gacaagaagt





4861
ttgagatcgt gaaattggcc tcctggtcca aggaaaagcc tggaggctgg tatagcacat





4921
tccgtcgagg gaagaagttc tcctacgtgg acgccgacgg gtccccagtg aatgtcgtgc





4981
agctgaactt cctgaaactg ctgagtgcca cagctcgcca gaacttcacc tactcctgcc





5041
agaatgcagc tgcctggctg gacgaagcca cgggtgacta cagccactcc gcccgcttcc





5101
ttggcaccaa tggagaggag ctgtctttca accagacgac agcagccact gtcagcgtcc





5161
cccaggatgg ctgccggctc cggaaaggac agacgaagac ccttttcgaa ttcagctctt





5221
ctcgagcggg atttctgccc ctgtgggatg tggcggccac tgactttggc cagacgaacc





5281
aaaagtttgg gtttgaactg ggccccgtct gcttcagcag ctgagagtgt ccggggtggg





5341
agggaccatg agggagcccc agaatggggt gcatttggtg ctgaggcttt gaagccaccg





5401
tatttttcgt tacctgtgac tatggagcca atgggatgtg acttcgctca tcacggacag





5461
tcattccttc tcctttccag ggtgctgggg gctggggttc cctggcccaa gggtccagcc





5521
tcctctcacc ccattccagg tggcatactg cagtctggct ctttctcccc tccctcccca





5581
cccaagcctc acctccccac cccttgaacc cccatgcaat gagcttctaa ctcagagctg





5641
atgaacaaaa gcccccccac ccccaatgcc tgcctcctca ctcctccgtc gctgcccttc





5701
acaccttttg gtgctacccc tccccagagt taagcactgg atgtctcctg atcccaggct





5761
gggaccccta cccccacccc ctttgatcct ttctacttcc acggtgaaag gactgaggtc





5821
ggactacaga gggaagaggg acttcccttg actgggttgt gtttcttttc ctgcctcagc





5881
ccagctctgc aaatcccctc cccctgcccc ccacctcccc aggctcacct tgccatgcca





5941
ggtggtttgg ggaccaagat gttggggggg tgaatcagga tcctaatggt gctgccctat





6001
ttatacctgg gtctgtatta aaagggaaag tcccccctgt tgtagatttc atctgcttcc





6061
tccttaggga aggctgggat atgatgagag attccagccc aagcctggcc ccccaccgcc





6121
aggccatagg gcataatttg catctcaaat ctgagaataa actgatgaac tgtgaaaaaa





6181
aaaaaaaaaa aa







The protein sequence of human COL5A3 is provided by GenBank Accession No. NP_056534.2 and is shown below (SEQ ID NO: 16). The signal peptide is underlined. The mature peptide is bolded and italicized.










(SEQ ID NO: 16)










1

mgnrrdlgqp raglclllaa lqllpgtqa
custom-character
custom-character







61

custom-charactercustom-charactercustom-character






121

custom-charactercustom-charactercustom-character






181

custom-charactercustom-charactercustom-character






241

custom-charactercustom-charactercustom-character






301

custom-charactercustom-charactercustom-character






361

custom-charactercustom-charactercustom-character






421

custom-charactercustom-charactercustom-character






481

custom-charactercustom-charactercustom-character






541

custom-charactercustom-charactercustom-character






601

custom-charactercustom-charactercustom-character






661

custom-charactercustom-charactercustom-character






721

custom-charactercustom-charactercustom-character






781

custom-charactercustom-charactercustom-character






841

custom-charactercustom-charactercustom-character






901

custom-charactercustom-charactercustom-character






961

custom-charactercustom-charactercustom-character






1021

custom-charactercustom-charactercustom-character






1081

custom-charactercustom-charactercustom-character






1141

custom-charactercustom-charactercustom-character






1201

custom-charactercustom-charactercustom-character






1261

custom-charactercustom-charactercustom-character






1321

custom-charactercustom-charactercustom-character






1381

custom-charactercustom-charactercustom-character






1441

custom-charactercustom-charactercustom-character






1501
fvpvplpvve ggleevlasl tslsleleql rrppgtaerp glvchelhrn hphlpdgeyw





1561
idpnqgcard sfrvfcnfta ggetclypdk kfeivklasw skekpggwys tfrrgkkfsy





1621
vdadgspvnv vqlnflklls atarqnftys cqnaaawlde atgdyshsar flgtngeels





1681
fnqttaatvs vpqdgcrlrk gqtktlfefs ssragflplw dvaatdfgqt nqkfgfelgp





1741
vcfss






The mRNA sequence of human hepatocyte growth factor (HGF) is provided by GenBank Accession No. M73239.1 and is shown below (SEQ ID NO: 17). The start and stop codons are bolded and underlined.










(SEQ ID NO: 17)










1
ccgaacagga ttctttcacc caggcatctc ctccagaggg atccgccagc ccgtccagca






61
gcaccatgtg ggtgaccaaa ctcctgccag ccctgctgct gcagcatgtc ctcctgcatc





121
tcctcctgct ccccatcgcc atcccctatg cagagggaca aaggaaaaga agaaatacaa





181
ttcatgaatt caaaaaatca gcaaagacta ccctaatcaa aatagatcca gcactgaaga





241
taaaaaccaa aaaagtgaat actgcagacc aatgtgctaa tagatgtact aggaataaag





301
gacttccatt cacttgcaag gcttttgttt ttgataaagc aagaaaacaa tgcctctggt





361
tccccttcaa tagcatgtca agtggagtga aaaaagaatt tggccatgaa tttgacctct





421
atgaaaacaa agactacatt agaaactgca tcattggtaa aggacgcagc tacaagggaa





481
cagtatctat cactaagagt ggcatcaaat gtcagccctg gagttccatg ataccacacg





541
aacacagctt tttgccttcg agctatcggg gtaaagacct acaggaaaac tactgtcgaa





601
atcctcgagg ggaagaaggg ggaccctggt gtttcacaag caatccagag gtacgctacg





661
aagtctgtga cattcctcag tgttcagaag ttgaatgcat gacctgcaat ggggagagtt





721
atcgaggtct catggatcat acagaatcag gcaagatttg tcagcgctgg gatcatcaga





781
caccacaccg gcacaaattc ttgcctgaaa gatatcccga caagggcttt gatgataatt





841
attgccgcaa tcccgatggc cagccgaggc catggtgcta tactcttgac cctcacaccc





901
gctgggagta ctgtgcaatt aaaacatgcg ctgacaatac tatgaatgac actgatgttc





961
ctttggaaac aactgaatgc atccaaggtc aaggagaagg ctacaggggc actgtcaata





1021
ccatttggaa tggaattcca tgtcagcgtt gggattctca gtatcctcac gagcatgaca





1081
tgactcctga aaatttcaag tgcaaggacc tacgagaaaa ttactgccga aatccagatg





1141
ggtctgaatc accctggtgt tttaccactg atccaaacat ccgagttggc tactgctccc





1201
aaattccaaa ctgtgatatg tcacatggac aagattgtta tcgtgggaat ggcaaaaatt





1261
atatgggcaa cttatcccaa acaagatctg gactaacatg ttcaatgtgg gacaagaaca





1321
tggaagactt acatcgtcat atcttctggg aaccagatgc aagtaagctg aatgagaatt





1381
actgccgaaa tccagatgat gatgctcatg gaccctggtg ctacacggga aatccactca





1441
ttccttggga ttattgccct atttctcgtt gtgaaggtga taccacacct acaatagtca





1501
atttagacca tcccgtaata tcttgtgcca aaacgaaaca attgcgagtt gtaaatggga





1561
ttccaacacg aacaaacata ggatggatgg ttagtttgag atacagaaat aaacatatct





1621
gcggaggatc attgataaag gagagttggg ttcttactgc acgacagtgt ttcccttctc





1681
gagacttgaa agattatgaa gcttggcttg gaattcatga tgtccacgga agaggagatg





1741
agaaatgcaa acaggttctc aatgtttccc agctggtata tggccctgaa ggatcagatc





1801
tggttttaat gaagcttgcc aggcctgctg tcctggatga ttttgttagt acgattgatt





1861
tacctaatta tggatgcaca attcctgaaa agaccagttg cagtgtttat ggctggggct





1921
acactggatt gatcaactat gatggcctat tacgagtggc acatctctat ataatgggaa





1981
atgagaaatg cagccagcat catcgaggga aggtgactct gaatgagtct gaaatatgtg





2041
ctggggctga aaagattgga tcaggaccat gtgaggggga ttatggtggc ccacttgttt





2101
gtgagcaaca taaaatgaga atggttcttg gtgtcattgt tcctggtcgt ggatgtgcca





2161
ttccaaatcg tcctggtatt tttgtccgag tagcatatta tgcaaaatgg atacacaaaa





2221
ttattttaac atataaggta ccacagtcat agctgaagta agtgtgtctg aagcacccac





2281
caatacaact gtcttttaca tgaagatttc agagaatgtg gaatttaaaa tgtcacttac





2341
aacaatccta agacaactac tggagagtca tgtttgttga aattctcatt aatgtttatg





2401
ggtgttttct gttgttttgt ttgtcagtgt tattttgtca atgttgaagt gaattaaggt





2461
acatgcaagt gtaataacat atctcctgaa gatacttgaa tggattaaaa aaacacacag





2521
gtatatttgc tggatgataa agatttcatg ggaaaaaaaa tcaattaatc tgtctaagct





2581
gctttctgat gttggtttct taataatgag taaaccacaa attaaatgtt attttaacct





2641
caccaaaaca atttatacct tgtgtcccta aattgtagcc ctatattaaa ttatattaca





2701
tttc







The amino acid sequence of human HGF is provided by GenBank Accession No. AAA64239.1 and is shown below (SEQ ID NO: 18). The signal peptide is shown in underlined font.










(SEQ ID NO: 18)










1

mwvtkllpal llqhvllhll llpiaipyae gqrkrrntih efkksakttl ikidpalkik







61
tkkvntadqc anrctrnkgl pftckafvfd karkqclwfp fasmssgvkk efghefdlye





121
nkdyirncii gkgrsykgtv sitksgikcq pwssmipheh sflpssyrgk dlqeaycrap





181
rgeeggpwcf tsnpevryev cdipqcseve cmtcagesyr glmdhtesgk icqrwdhqtp





241
hrhkflpery pdkgfddnyc rnpdgqprpw cytldphtrw eycaiktcad ntmndtdvpl





301
etteciqgqg egyrgtvnti wngipcqrwd sqyphehdmt penfkckdlr eaycrapdgs





361
espwcfttdp nirvgycsqi pncdmshgqd cyrgagkaym gnlsqtrsgl tcsmwdknme





421
dlhrhifwep dasklnenyc rnpdddahgp wcytgaplip wdycpisrce gdttptivnl





481
dhpviscakt kqlrvvngip trtnigwmvs lryrakhicg gslikeswvl tarqcfpsrd





541
lkdyeawlgi hdvhgrgdek ckqvlnvsql vygpegsdlv lmklarpavl ddfvstidlp





601
nygctipekt scsvygwgyt glinydgllr vahlyimgae kcsqhhrgkv tlneseicag





661
aekigsgpce gdyggplvce qhkmrmvlgv ivpgrgcaip arpgifvrva yyakwihkii





721
ltykvpqs 






The mRNA sequence of human WNTSA is provided by GenBank Accession No. NM_003392.4 and is shown below (SEQ ID NO: 19). The start and stop codons are bolded and underlined.










(SEQ ID NO: 19)










1
actaactcgc ggctgcagga tcagcgtctg gaagcagacg tttcggctac agacccagag






61
aggaggagct ggagatcagg aggcgtgagc cgccaagagt ttgcagaatc tgtggtgtga





121
atgaactggg ggcacctggg cgcacagatc gccccccttc ccccgccccg ggccacagtt





181
gagtagtggt acattttttt caccctcttg tgaagaattt ctttttatta ttatttgtcg





241
taaggtcttt tgcacaatca cgcccacatt tggggttgga aagccctaat taccgccgtc





301
gctgatggac gttggaaacg gagcgcctct ccgtggaaca gttgcctgcg cgccctcgcc





361
ggaccggcgg ctccctagtt gcgccccgac caggccctgc ccttgctgcc ggctcgcgcg





421
cgtccgcgcc ccctccattc ctgggcgcat cccagctctg ccccaactcg ggagtccagg





481
cccgggcgcc agtgcccgct tcagctccgg ttcactgcgc ccgccggacg cgcgccggag





541
gactccgcag ccctgctcct gaccgtcccc ccaggcttaa cccggtcgct ccgctcggat





601
tcctcggctg cgctcgctcg ggtggcgact tcctccccgc gccccctccc cctcgccatg





661
aagaagtcca ttggaatatt aagcccagga gttgctttgg ggatggctgg aagtgcaatg





721
tcttccaagt tcttcctagt ggctttggcc atatttttct ccttcgccca ggttgtaatt





781
gaagccaatt cttggtggtc gctaggtatg aataaccctg ttcagatgtc agaagtatat





841
attataggag cacagcctct ctgcagccaa ctggcaggac tttctcaagg acagaagaaa





901
ctgtgccact tgtatcagga ccacatgcag tacatcggag aaggcgcgaa gacaggcatc





961
aaagaatgcc agtatcaatt ccgacatcga aggtggaact gcagcactgt ggataacacc





1021
tctgtttttg gcagggtgat gcagataggc agccgcgaga cggccttcac atacgcggtg





1081
agcgcagcag gggtggtgaa cgccatgagc cgggcgtgcc gcgagggcga gctgtccacc





1141
tgcggctgca gccgcgccgc gcgccccaag gacctgccgc gggactggct ctggggcggc





1201
tgcggcgaca acatcgacta tggctaccgc tttgccaagg agttcgtgga cgcccgcgag





1261
cgggagcgca tccacgccaa gggctcctac gagagtgctc gcatcctcat gaacctgcac





1321
aacaacgagg ccggccgcag gacggtgtac aacctggctg atgtggcctg caagtgccat





1381
ggggtgtccg gctcatgtag cctgaagaca tgctggctgc agctggcaga cttccgcaag





1441
gtgggtgatg ccctgaagga gaagtacgac agcgcggcgg ccatgcggct caacagccgg





1501
ggcaagttgg tacaggtcaa cagccgcttc aactcgccca ccacacaaga cctggtctac





1561
atcgacccca gccctgacta ctgcgtgcgc aatgagagca ccggctcgct gggcacgcag





1621
ggccgcctgt gcaacaagac gtcggagggc atggatggct gcgagctcat gtgctgcggc





1681
cgtggctacg accagttcaa gaccgtgcag acggagcgct gccactgcaa gttccactgg





1741
tgctgctacg tcaagtgcaa gaagtgcacg gagatcgtgg accagtttgt gtgcaagtag





1801
tgggtgccac ccagcactca gccccgctcc caggacccgc ttatttatag aaagtacagt





1861
gattctggtt tttggttttt agaaatattt tttatttttc cccaagaatt gcaaccggaa





1921
ccattttttt tcctgttacc atctaagaac tctgtggttt attattaata ttataattat





1981
tatttggcaa taatgggggt gggaaccaag aaaaatattt attttgtgga tctttgaaaa





2041
ggtaatacaa gacttctttt gatagtatag aatgaagggg aaataacaca taccctaact





2101
tagctgtgtg gacatggtac acatccagaa ggtaaagaaa tacattttct ttttctcaaa





2161
tatgccatca tatgggatgg gtaggttcca gttgaaagag ggtggtagaa atctattcac





2221
aattcagctt ctatgaccaa aatgagttgt aaattctctg gtgcaagata aaaggtcttg





2281
ggaaaacaaa acaaaacaaa acaaacctcc cttccccagc agggctgcta gcttgctttc





2341
tgcattttca aaatgataat ttacaatgga aggacaagaa tgtcatattc tcaaggaaaa





2401
aaggtatatc acatgtctca ttctcctcaa atattccatt tgcagacaga ccgtcatatt





2461
ctaatagctc atgaaatttg ggcagcaggg aggaaagtcc ccagaaatta aaaaatttaa





2521
aactcttatg tcaagatgtt gatttgaagc tgttataaga attaggattc cagattgtaa





2581
aaagatcccc aaatgattct ggacactaga tttttttgtt tggggaggtt ggcttgaaca





2641
taaatgaaaa tatcctgtta ttttcttagg gatacttggt tagtaaatta taatagtaaa





2701
aataatacat gaatcccatt cacaggttct cagcccaagc aacaaggtaa ttgcgtgcca





2761
ttcagcactg caccagagca gacaacctat ttgaggaaaa acagtgaaat ccaccttcct





2821
cttcacactg agccctctct gattcctccg tgttgtgatg tgatgctggc cacgtttcca





2881
aacggcagct ccactgggtc ccctttggtt gtaggacagg aaatgaaaca ttaggagctc





2941
tgcttggaaa acagttcact acttagggat ttttgtttcc taaaactttt attttgagga





3001
gcagtagttt tctatgtttt aatgacagaa cttggctaat ggaattcaca gaggtgttgc





3061
agcgtatcac tgttatgatc ctgtgtttag attatccact catgcttctc ctattgtact





3121
gcaggtgtac cttaaaactg ttcccagtgt acttgaacag ttgcatttat aaggggggaa





3181
atgtggttta atggtgcctg atatctcaaa gtcttttgta cataacatat atatatatat





3241
acatatatat aaatataaat ataaatatat ctcattgcag ccagtgattt agatttacag





3301
tttactctgg ggttatttct ctgtctagag cattgttgtc cttcactgca gtccagttgg





3361
gattattcca aaagtttttt gagtcttgag cttgggctgt ggccctgctg tgatcatacc





3421
ttgagcacga cgaagcaacc ttgtttctga ggaagcttga gttctgactc actgaaatgc





3481
gtgttgggtt gaagatatct tttttctttt ctgcctcacc cctttgtctc caacctccat





3541
ttctgttcac tttgtggaga gggcattact tgttcgttat agacatggac gttaagagat





3601
attcaaaact cagaagcatc agcaatgttt ctcttttctt agttcattct gcagaatgga





3661
aacccatgcc tattagaaat gacagtactt attaattgag tccctaagga atattcagcc





3721
cactacatag atagcttttt tttttttttt tttaataagg acacctcttt ccaaacagtg





3781
ccatcaaata tgttcttatc tcagacttac gttgttttaa aagtttggaa agatacacat





3841
ctttcatacc ccccttaggc aggttggctt tcatatcacc tcagccaact gtggctctta





3901
atttattgca taatgatatt cacatcccct cagttgcagt gaattgtgag caaaagatct





3961
tgaaagcaaa aagcactaat tagtttaaaa tgtcactttt ttggttttta ttatacaaaa





4021
accatgaagt acttttttta tttgctaaat cagattgttc ctttttagtg actcatgttt





4081
atgaagagag ttgagtttaa caatcctagc ttttaaaaga aactatttaa tgtaaaatat





4141
tctacatgtc attcagatat tatgtatatc ttctagcctt tattctgtac ttttaatgta





4201
catatttctg tcttgcgtga tttgtatatt tcactggttt aaaaaacaaa catcgaaagg





4261
cttatgccaa atggaagata gaatataaaa taaaacgtta cttgtatatt ggtaagtggt





4321
ttcaattgtc cttcagataa ttcatgtgga gatttttgga gaaaccatga cggatagttt





4381
aggatgacta catgtcaaag taataaaaga gtggtgaatt ttaccaaaac caagctattt





4441
ggaagcttca aaaggtttct atatgtaatg gaacaaaagg ggaattctct tttcctatat





4501
atgttcctta caaaaaaaaa aaaaaaagaa atcaagcaga tggcttaaag ctggttatag





4561
gattgctcac attcttttag cattatgcat gtaacttaat tgttttagag cgtgttgctg





4621
ttgtaacatc ccagagaaga atgaaaaggc acatgctttt atccgtgacc agatttttag





4681
tccaaaaaaa tgtatttttt tgtgtgttta ccactgcaac tattgcacct ctctatttga





4741
atttactgtg gaccatgtgt ggtgtctcta tgccctttga aagcagtttt tataaaaaga





4801
aagcccgggt ctgcagagaa tgaaaactgg ttggaaacta aaggttcatt gtgttaagtg





4861
caattaatac aagttattgt gcttttcaaa aatgtacacg gaaatctgga cagtgctcca





4921
cagattgata cattagcctt tgctttttct ctttccggat aaccttgtaa catattgaaa





4981
ccttttaagg atgccaagaa tgcattattc cacaaaaaaa cagcagacca acatatagag





5041
tgtttaaaat agcatttctg ggcaaattca aactcttgtg gttctaggac tcacatctgt





5101
ttcagttttt cctcagttgt atattgacca gtgttcttta ttgcaaaaac atatacccga





5161
tttagcagtg tcagcgtatt ttttcttctc atcctggagc gtattcaaga tcttcccaat





5221
acaagaaaat taataaaaaa tttatatata ggcagcagca aaagagccat gttcaaaata





5281
gtcattatgg gctcaaatag aaagaagact tttaagtttt aatccagttt atctgttgag





5341
ttctgtgagc tactgacctc ctgagactgg cactgtgtaa gttttagttg cctaccctag





5401
ctcttttctc gtacaatttt gccaatacca agtttcaatt tgtttttaca aaacattatt





5461
caagccacta gaattatcaa atatgacgct atagcagagt aaatactctg aataagagac





5521
cggtactagc taactccaag agatcgttag cagcatcagt ccacaaacac ttagtggccc





5581
acaatatata gagagataga aaaggtagtt ataacttgaa gcatgtattt aatgcaaata





5641
ggcacgaagg cacaggtcta aaatactaca ttgtcactgt aagctatact tttaaaatat





5701
ttattttttt taaagtattt tctagtcttt tctctctctg tggaatggtg aaagagagat





5761
gccgtgtttt gaaagtaaga tgatgaaatg aatttttaat tcaagaaaca ttcagaaaca





5821
taggaattaa aacttagaga aatgatctaa tttccctgtt cacacaaact ttacacttta





5881
atctgatgat tggatatttt attttagtga aacatcatct tgttagctaa ctttaaaaaa





5941
tggatgtaga atgattaaag gttggtatga ttttttttta atgtatcagt ttgaacctag





6001
aatattgaat taaaatgctg tctcagtatt ttaaaagcaa aaaaggaatg gaggaaaatt





6061
gcatcttaga ccatttttat atgcagtgta caatttgctg ggctagaaat gagataaaga





6121
ttatttattt ttgttcatat cttgtacttt tctattaaaa tcattttatg aaatccaaaa





6181
aaaaaaaaaa aaaa







The amino acid sequence of human WNT5A is provided by GenBank Accession No. NP_003383.2 and is shown below (SEQ ID NO: 20).










(SEQ ID NO: 20)










1
mkksigilsp gvalgmagsa msskfflval aiffsfaqvv ieanswwslg mnnpvqmsev






61
yiigaqplcs qlaglsqgqk klchlyqdhm qyigegaktg ikecqyqfrh rrwncstvdn





121
tsvfgrvmqi gsretaftya vsaagvvnam sracregels tcgcsraarp kdlprdwlwg





181
gcgdnidygy rfakefvdar ererihakgs yesarilmnl hnneagrrtv ynladvackc





241
hgvsgscslk tcwlqladfr kvgdalkeky dsaaamrlns rgklvqvnsr fnspttqdlv





301
yidpspdycv rnestgslgt qgrlcnktse gmdgcelmcc grgydqfktv qterchckfh





361
wccyvkckkc teivdqfvck 






The mRNA sequence of human CCL2 is provided by GenBank Accession No. NM_002982.3 and is shown below (SEQ ID NO: 21). The start and stop codons are bolded and underlined.










(SEQ ID NO: 21)










1
gaggaaccga gaggctgaga ctaacccaga aacatccaat tctcaaactg aagctcgcac






61
tctcgcctcc aqcatgaaaq tctctgccgc ccttctgtgc ctgctgctca tagcagccac





121
cttcattccc caagggctcg ctcagccaga tgcaatcaat gccccagtca cctgctgtta





181
taacttcacc aataggaaga tctcagtgca gaggctcgcg agctatagaa gaatcaccag





241
cagcaagtgt cccaaagaag ctgtgatctt caagaccatt gtggccaagg agatctgtgc





301
tgaccccaag cagaagtggg ttcaggattc catggaccac ctggacaagc aaacccaaac





361
tccgaagact tgaacactca ctccacaacc caagaatctg cagctaactt attttcccct





421
agctttcccc agacaccctg ttttatttta ttataatgaa ttttgtttgt tgatgtgaaa





481
cattatgcct taagtaatgt taattcttat ttaagttatt gatgttttaa gtttatcttt





541
catggtacta gtgtttttta gatacagaga cttggggaaa ttgcttttcc tcttgaacca





601
cagttctacc cctgggatgt tttgagggtc tttgcaagaa tcattaatac aaagaatttt





661
ttttaacatt ccaatgcatt gctaaaatat tattgtggaa atgaatattt tgtaactatt





721
acaccaaata aatatatttt tgtacaaaaa aaaaaaaaaa 







The amino acid sequence of human CCL2 is provided by GenBank Accession No. NP_002973.1 and is shown below (SEQ ID NO: 22). The predicted signal peptide is underlined.










(SEQ ID NO: 22)










 1

mkvsaallcl lliaatfipq glaqpdaina pvtccynftn rkisvqrlas yrritsskcp







61
keavifktiv akeicadpkq kwvqdsmdhl dkqtqtpkt 






The mRNA sequence of human colony stimulating factor 2 (CSF2) is provided by GenBank Accession No. NM_000758.3 and is shown below (SEQ ID NO: 23). The start and stop codons are bolded and underlined.










(SEQ ID NO: 23)










1
acacagagag aaaggctaaa gttctctgga ggatgtggct gcagagcctg ctgctcttgg






611
gcactgtggc ctgcagcatc tctgcacccg cccgctcgcc cagccccagc acgcagccct





121
gggagcatgt gaatgccatc caggaggccc ggcgtctcct gaacctgagt agagacactg





181
ctgctgagat gaatgaaaca gtagaagtca tctcagaaat gtttgacctc caggagccga





241
cctgcctaca gacccgcctg gagctgtaca agcagggcct gcggggcagc ctcaccaagc





301
tcaagggccc cttgaccatg atggccagcc actacaagca gcactgccct ccaaccccgg





361
aaacttcctg tgcaacccag attatcacct ttgaaagttt caaagagaac ctgaaggact





421
ttctgcttgt catccccttt gactgctggg agccagtcca ggagtgagac cggccagatg





481
aggctggcca agccggggag ctgctctctc atgaaacaag agctagaaac tcaggatggt





541
catcttggag ggaccaaggg gtgggccaca gccatggtgg gagtggcctg gacctgccct





601
gggccacact gaccctgata caggcatggc agaagaatgg gaatatttta tactgacaga





661
aatcagtaat atttatatat ttatattttt aaaatattta tttatttatt tatttaagtt





721
catattccat atttattcaa gatgttttac cgtaataatt attattaaaa atatgcttct





781
acttgaaaaa aaaaaaaaaa 







The amino acid sequence of human colony stimulating factor 2 (CSF2) is provided by GenBank Accession No. NP_000749.2 and is shown below (SEQ ID NO: 24). The signal peptide is underlined.










(SEQ ID NO: 24)










1

mwlqsllllg tvacsisapa rspspstqpw ehvnaiqear rllnlsrdta aemnetvevi







61
semfdlqept clqtrlelyk qglrgsltkl kgpltmmash ykqhcpptpe tscatqiitf





121
esfkenlkdf llvipfdcwe pvqe






The mRNA sequence of human connective tissue growth factor (CTGF) is provided by GenBank Accession No. NM_001901.2 and is shown below (SEQ ID NO: 25). The start and stop codons are bolded and underlined.










(SEQ ID NO: 25)










1
aaactcacac aacaactctt ccccgctgag aggagacagc cagtgcgact ccaccctcca






61
gctcgacggc agccgccccg gccgacagcc ccgagacgac agcccggcgc gtcccggtcc





121
ccacctccga ccaccgccag cgctccaggc cccgccgctc cccgctcgcc gccaccgcgc





181
cctccgctcc gcccgcagtg ccaaccatga ccgccgccag tatgggcccc gtccgcgtcg





241
ccttcgtggt cctcctcgcc ctctgcagcc ggccggccgt cggccagaac tgcagcgggc





301
cgtgccggtg cccggacgag ccggcgccgc gctgcccggc gggcgtgagc ctcgtgctgg





361
acggctgcgg ctgctgccgc gtctgcgcca agcagctggg cgagctgtgc accgagcgcg





421
acccctgcga cccgcacaag ggcctcttct gtgacttcgg ctccccggcc aaccgcaaga





481
tcggcgtgtg caccgccaaa gatggtgctc cctgcatctt cggtggtacg gtgtaccgca





541
gcggagagtc cttccagagc agctgcaagt accagtgcac gtgcctggac ggggcggtgg





601
gctgcatgcc cctgtgcagc atggacgttc gtctgcccag ccctgactgc cccttcccga





661
ggagggtcaa gctgcccggg aaatgctgcg aggagtgggt gtgtgacgag cccaaggacc





721
aaaccgtggt tgggcctgcc ctcgcggctt accgactgga agacacgttt ggcccagacc





781
caactatgat tagagccaac tgcctggtcc agaccacaga gtggagcgcc tgttccaaga





841
cctgtgggat gggcatctcc acccgggtta ccaatgacaa cgcctcctgc aggctagaga





901
agcagagccg cctgtgcatg gtcaggcctt gcgaagctga cctggaagag aacattaaga





961
agggcaaaaa gtgcatccgt actcccaaaa tctccaagcc tatcaagttt gagctttctg





1021
gctgcaccag catgaagaca taccgagcta aattctgtgg agtatgtacc gacggccgat





1081
gctgcacccc ccacagaacc accaccctgc cggtggagtt caagtgccct gacggcgagg





1141
tcatgaagaa gaacatgatg ttcatcaaga cctgtgcctg ccattacaac tgtcccggag





1201
acaatgacat ctttgaatcg ctgtactaca ggaagatgta cggagacatg gcatgaagcc





1261
agagagtgag agacattaac tcattagact ggaacttgaa ctgattcaca tctcattttt





1321
ccgtaaaaat gatttcagta gcacaagtta tttaaatctg tttttctaac tgggggaaaa





1381
gattcccacc caattcaaaa cattgtgcca tgtcaaacaa atagtctatc aaccccagac





1441
actggtttga agaatgttaa gacttgacag tggaactaca ttagtacaca gcaccagaat





1501
gtatattaag gtgtggcttt aggagcagtg ggagggtacc agcagaaagg ttagtatcat





1561
cagatagcat cttatacgag taatatgcct gctatttgaa gtgtaattga gaaggaaaat





1621
tttagcgtgc tcactgacct gcctgtagcc ccagtgacag ctaggatgtg cattctccag





1681
ccatcaagag actgagtcaa gttgttcctt aagtcagaac agcagactca gctctgacat





1741
tctgattcga atgacactgt tcaggaatcg gaatcctgtc gattagactg gacagcttgt





1801
ggcaagtgaa tttgcctgta acaagccaga ttttttaaaa tttatattgt aaatattgtg





1861
tgtgtgtgtg tgtgtgtata tatatatata tgtacagtta tctaagttaa tttaaagttg





1921
tttgtgcctt tttatttttg tttttaatgc tttgatattt caatgttagc ctcaatttct





1981
gaacaccata ggtagaatgt aaagcttgtc tgatcgttca aagcatgaaa tggatactta





2041
tatggaaatt ctgctcagat agaatgacag tccgtcaaaa cagattgttt gcaaagggga





2101
ggcatcagtg tccttggcag gctgatttct aggtaggaaa tgtggtagcc tcacttttaa





2161
tgaacaaatg gcctttatta aaaactgagt gactctatat agctgatcag ttttttcacc





2221
tggaagcatt tgtttctact ttgatatgac tgtttttcgg acagtttatt tgttgagagt





2281
gtgaccaaaa gttacatgtt tgcacctttc tagttgaaaa taaagtgtat attttttcta





2341
taaaaaaaaa aaaaaaaa







The amino acid sequence of human connective tissue growth factor (CTGF) is provided by GenBank Accession No. NP_001892.1 and is shown below (SEQ ID NO: 26). The predicted signal peptide is underlined.










(SEQ ID NO: 26)










1

mtaasmgpvr vafvvllalc srpavgqncs gpcrcpdepa prcpagvslv ldgcgccrvc







61
akqlgelcte rdpcdphkgl fcdfgspanr kigvctakdg apcifggtvy rsgesfqssc





121
kyqctcldga vgcmplcsmd vrlpspdcpf prrvklpgkc ceewvcdepk dqtvvgpala





181
ayrledtfgp dptmirancl vqttewsacs ktcgmgistr vtndnascrl ekqsrlcmvr





241
pceadleeni kkgkkcirtp kiskpikfel sgctsmktyr akfcgvctdg rcctphrttt





301
lpvefkcpdg evmkknmmfi ktcachyncp gdndifesly yrkmygdma 






The mRNA sequence of human transgelin (TAGLN) is provided by GenBank Accession No. NM_001001522.1 and is shown below (SEQ ID NO: 27). The start and stop codons are bolded and underlined.










(SEQ ID NO: 27)










1
tcaccacggc ggcagccctt taaacccctc acccagccag cgccccatcc tgtctgtccg






61
aacccagaca caagtcttca ctccttcctg cgagccctga ggaagccttg tgagtgcatt





121
ggctggggct tggagggaag ttgggctgga gctggacagg agcagtgggt gcatttcagg





181
caggctctcc tgaggtccca ggcgccagct ccagctccct ggctagggaa acccaccctc





241
tcagtcagca tgggggccca agctccaggc agggtgggct ggatcactag cgtcctggat





301
ctctctcaga ctgggcagcc ccgggctcat tgaaatgccc cggatgactt ggctagtgca





361
gaggaattga tggaaaccac cggggtgaga gggaggctcc ccatctcagc cagccacatc





421
cacaaggtgt gtgtaagggt gcaggcgccg gccggttagg ccaaggctct actgtctgtt





481
gcccctccag gagaacttcc aaggagcttt ccccagacat ggccaacaag ggtccttcct





541
atggcatgag ccgcgaagtg cagtccaaaa tcgagaagaa gtatgacgag gagctggagg





601
agcggctggt ggagtggatc atagtgcagt gtggccctga tgtgggccgc ccagaccgtg





661
ggcgcttggg cttccaggtc tggctgaaga atggcgtgat tctgagcaag ctggtgaaca





721
gcctgtaccc tgatggctcc aagccggtga aggtgcccga gaacccaccc tccatggtct





781
tcaagcagat ggagcaggtg gctcagttcc tgaaggcggc tgaggactat ggggtcatca





841
agactgacat gttccagact gttgacctct ttgaaggcaa agacatggca gcagtgcaga





901
ggaccctgat ggctttgggc agcttggcag tgaccaagaa tgatgggcac taccgtggag





961
atcccaactg gtttatgaag aaagcgcagg agcataagag ggaattcaca gagagccagc





1021
tgcaggaggg aaagcatgtc attggccttc agatgggcag caacagaggg gcctcccagg





1081
ccggcatgac aggctacgga cgacctcggc agatcatcag ttagagcgga gagggctagc





1141
cctgagcccg gccctccccc agctccttgg ctgcagccat cccgcttagc ctgcctcacc





1201
cacacccgtg tggtaccttc agccctggcc aagctttgag gctctgtcac tgagcaatgg





1261
taactgcacc tgggcagctc ctccctgtgc ccccagcctc agcccaactt cttacccgaa





1321
agcatcactg ccttggcccc tccctcccgg ctgcccccat cacctctact gtctcctccc





1381
tgggctaagc aggggagaag cgggctgggg gtagcctgga tgtgggccaa gtccactgtc





1441
ctccttggcg gcaaaagccc attgaagaag aaccagccca gcctgccccc tatcttgtcc





1501
tggaatattt ttggggttgg aactcaaaaa aaaaaaaaaa aaatcaatct tttctcaaaa





1561
aaaaaaaaaa aaaa







The amino acid sequence of human transgelin (TAGLN) is provided by GenBank Accession No. NP_001001522.1 and is shown below (SEQ ID NO: 28).










(SEQ ID NO: 28)










1
mankgpsygm srevqskiek kydeeleerl vewiivqcgp dvgrpdrgrl gfqvwlkngv






61
ilsklvnsly pdgskpvkvp enppsmvfkq meqvaqflka aedygviktd mfqtvdlfeg





121
kdmaavqrtl malgslavtk ndghyrgdpn wfmkkaqehk reftesqlqe gkhviglqmg





181
rgasqagm tgygrprqii s






In some examples, VEGF includes VEGFA, VEGFB, VEGFC, and/or VEGFD. Exemplary GenBank Accession Nos. of VEGFA include (amino acid) AAA35789.1 (GI:181971) and (nucleic acid) NM_001171630.1 (GI:284172472), incorporated herein by reference. Exemplary GenBank Accession Nos. of VEGFB include (nucleic acid) NM_003377.4 and (amino acid) NP_003368.1, incorporated herein by reference. Exemplary GenBank Accession Nos. of VEGFC include (nucleic acid) NM_005429.3 and (amino acid) NP_005420.1, incorporated herein by reference. Exemplary GenBank Accession Nos. of VEGFD include (nucleic acid) NM_004469.4 and (amino acid) NP_004460.1, incorporated herein by reference.


Exemplary GenBank Accession Nos. of FGF include (nucleic acid) U76381.2 and (amino acid) AAB18786.3, incorporated herein by reference.


The hydrogels and methods described herein promote skin repair and regeneration without the need for exogenous cytokines, growth factors or bioactive drugs, but instead by simply adjusting the stiffness of a material, e.g., wound dressing material, placed in/on/around a wound site. For example, different wound dressing materials with different mechanical properties are implanted according to the wound repair stage one intends to promote or diminish.


The process of wound healing comprises several phases: hemostasis, inflammation, proliferation, and remodeling. Upon injury (e.g., to the skin), platelets aggregate at the site of injury to from a clot in order to reduce bleeding. This process is called hemostasis. In the inflammation phase, white blood cells remove bacteria and cell debris from the wound. In the proliferation phase, angiogenesis (formation of new blood vessels by vascular endothelial cells) occurs, as does collagen deposition, tissue formation, epithelialization, and wound contraction at the site of the wound. To form tissue at the site of the wound, fibroblasts grow to form a new extracellular matrix by secreting proteins such as fibronectin and collagen. Re-epithelialization also occurs in which epithelial cells proliferate and cover the site of the wound in order to cover the newly formed tissue. In order to cause wound contraction, myofibroblasts decrease the size of the wound by contracting and bringing in the edges of the wound. In the remodeling phase, apoptosis occurs to remove unnecessary cells at the site of the wound. One or more of these phases in the process of wound healing is disrupted or delayed in non-healing/slow-healing wounds, e.g., due to diabetes, old age, or infections.


Following a skin lesion, disruption of the tissue architecture leads to a dramatically altered mechanical context at the site of the wound (Wong et al. J Invest Dermatol. 2011; 131:2186-96). Mechanical cues in the wound microenvironment can guide the behavior of a milieu of infiltrating cells such as recruited immune cells (Wong et al. FASEB Journal. 2011; 25:4498-510.; McWhorter et al. Proceedings of the National Academy of Sciences. 2013; 110:17253-8) and fibroblasts (Wipff et al. J Cell Biol 2007; 179:1311-23). More broadly, mechanical cues are known to sponsor or hinder different stages of the wound repair response, from epithelial morphogenesis (Zhang et al. Nature. 2011; 471:99-103) to blood vessel formation (Boerckel et al. Proceedings of the National Academy of Sciences 2011; 108:674-80). Before the invention, importance of mechanical forces in the context of wound dressing design was often overlooked.


In some cases, the physicochemical properties of the hydrogel are manipulated to target healing at different stages of wound healing (Boateng et al. Journal of Pharmaceutical Sciences. 2008; 97:2892-923). For example, in some cases, it is beneficial to minimize the inflammatory stage of the healing response. A tissue lesion can cause acute inflammation, and resolution of this inflammatory phase must occur in order to achieve a complete and successful repair response. Systemic diseases such as diabetes, venous insufficiency, and/or infection, cause chronic inflammation, which is a hallmark of non-healing wounds and which impairs the healing process. See, e.g., Eming et al. J Invest Dermatol. 2007; 127:514-25. Depending on the type of wound and the subject (e.g., age, diseased/healthy), wound healing may progress differently and each stage of the wound healing process may take different amounts of time. As an example, early gestation fetus heals dermal wounds rapidly and scarlessly and in the absense of pro-inflammatory signals. See, e.g., Bullard K M, Longaker M T, Lorenz H P. Fetal Wound Healing: Current Biology. World J Surg. 2003; 27:54-61.


In some cases, the stiffness of the wound dressing materials matches the stiffness of structurally intact/healthy tissue (e.g., at the site of the wound prior to injury), which can vary depending on the type of injured tissue, site of injury, natural person-to-person variations, and/or age. For example, the stiffness can be tuned over the range of typical soft tissues (heart, lung, kidney, liver, muscle, neural, etc.) from elastic modulus ˜20 Pascals (fat) to ˜100,000 Pascals (skeletal muscle). Different tissue types are characterized by different stiffness, e.g., normal brain tissue has a shear modulus of approximately 200 Pascal. Cell growth/behavior also differs relative to the disease state of a given tissue, e.g., the shear modulus (a measure of stiffness) of normal mammary tissue is approximately 100 Pascal, whereas that of breast tumor tissue is approximately 2000 Pascal. Similarly, normal liver tissue has a shear modulus of approximately 300 Pascal compared to fibrotic liver tissue, which is characterized by a shear modulus of approximately 800 Pascal. Growth, signal transduction, gene or protein expression/secretion, as well as other physiologic parameters are altered in response to contact with different substrate stiffness and evaluated in response to contact with substrates characterized by mechanical properties that simulate different tissue types or disease states. A schematic illustrating the varying stiffnesses of substrates that lead to mesenchymal stem cell differentiation into various tissue types is shown in FIG. 10.


Skin is a multilayered, non-linear anisotropic material, which is under pre-stress in vivo. See, e.g., Annaidha et al. Journal of the Mechanical Behavior of Biomedical Materials. 2012; 5:139-48, incorporated herein by reference. Measuring the mechanical properties of skin is challenging, and the measured mechanical properties depend on the technique used. The Young's modulus (or storage modulus) of skin, E, has been reported to vary between 0.42 MPa and 0.85 MPa based on orsion tests, 4.6 MPa and 20 Mpa based on tensile tests, and between 0.05 MPa and 0.15 MPa based on suction tests. See, e.g., Pailler-Mattei Medical Engineering & Physics. 2008; 30:599-606, incorporated herein by reference. The skin's mechanical properties change as a person ages. Skin becomes thinner, stiffer, less tense, and less flexible with age. See, e.g., Fau et al. Int J Cosmet Sci. 2001; 23:353-62, incorporated herein by reference. For example, the Young's modulus (or storage modulus) of the skin doubles with age. See, e.g., Agache et al. Arch Dermatol Res. 1980; 269:221-32, incorporated herein by reference. Skin tension decreases with age, with tension being higher in a child (e.g., 21 N/mm2) and lower in the elderly adult (e.g., 17 N/mm2). The elasticity modulus also decreases with age, with the modulus being higher in children (e.g, 70 N/mm2) than in elderly adults (e.g., 60 N/mm2). Also, the mean ultimate skin deformation before bursting decreases from 75% for newborns to 60% for elderly adults. See, e.g., Pawlaczyk et al. Postep Dermatol Alergol 2013; 30:302-6, incorporated herein by reference.


Thus, the hydrogel materials, e.g., wound dressings, described herein are customized and specifically engineered to adopt the stiffness of a particular target age group. For example, the hydrogels comprise a stiffness that matches that of a tissue (e.g., cutaneous, mucous, bony, soft, vascular, or cartilaginous tissue) of a newborn, toddler, child, teenager, adult, middle-aged adult, or elderly adult. For example the stiffness of the hydrogels matches that of a tissue in a subject having an age of 0-2, 0-12, 2-6, 6-12, 13-18, 13-20, 0-18, 0-20, 20-50, 20-30, 20-40, 30-40, 30-50, 40-50, 50-110, 60-110, or 70-110 years. In some examples, hydrogels with a storage modulus of about 50-100 N/mm2 are suitable for wound healing, e.g., of a cutaneous tissue, in a child, e.g., with an age of 18 years or less. In other examples, hydrogels with a storage modulus of about 40-80 N/mm2 are suitable for wound healing, e.g., of a cutaneous tissue, in an adult, e.g., with an age of 18 years or older. Such hydrogels are made with the specified storage moduli by varying the components as described above.


The hydrogels/wound dressing materials of the invention modulate the expression of various proteins in cells (e.g., fibroblasts) at or surrounding the site of administration or the site of the injured tissue, e.g., a tissue that is undergoing the wound healing process. For example, the hydrogel modulates (e.g., upregulates or downregulates) the expression level of a protein involved in one or more of the phases of healing, e.g., hemostasis, inflammation, proliferation, and/or remodeling. For example, the modulated protein level enhances, accelerates, and/or diminishes a phase of healing.


For example, the hydrogel upregulates or downregulates the expression of an inflammation associated protein, e.g., IL-10 and/or COX-2, a cell adhesion or extracellular matrix protein, e.g., integrin a4 (ITGA4), metallopeptidase 1 (MMP1), or vitronectin (VTN), a collagen protein, e.g., Type IV (e.g., COL4A1 or COL4A3) or Type V (e.g., COL5A3) protein, or hepatocyte growth factor (HGF) or a member of the WNT gene family (WNTSA). For example, the expression is upregulated or downregulated at the polypeptide or mRNA level. The polypeptide or mRNA level of the protein is increased or decreased by at least 1.5-fold (e.g., at least 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel.


In some embodiments, the IL-10 polypeptide or mRNA level is increased or decreased by at least 2-fold (e.g., at least 2, 3, 4, 5, 6, 7, 8, 9, 10-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel. In some cases, the COX-2 polypeptide or mRNA level is increased or decreased by at least 2-fold (e.g., at least 2, 3, 4, 5, 6, 7, 8, 9, 10, 12, 14, 18, 20-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel. In some examples, administration of the hydrogel reduces the level of proteins at a site of a wound that are involved in hemostasis, inflammation, proliferation, and/or remodeling, e.g., to prevent excessive clotting, inflammation, proliferative cells, and/or remodeling. For example, administration of the hydrogel reduces the level of inflammatory factors at a site of a wound, e.g., to minimize inflammation. In other examples, administration of the hydrogel enhances the level of proteins at a site of a wound that are involved in hemostasis, inflammation, proliferation, and/or remodeling.


In other embodiments, the hydrogel upregulates or downregulates the expression of an inflammation associated protein, e.g., CCL2, colony stimulating factor 2 (CSF2), connective tissue growth factor (CTGF), and/or transgelin (TAGLN) protein. The protein is upregulated or downregulated at the polypeptide or mRNA level, e.g., by at least 1.5-fold (e.g., at least 1.5, 2, 3, 4, 5, 6, 7, 8, 9, 10-fold, or greater) in tissues at or surrounding (e.g., within 5 cm, e.g., within 5, 4, 3, 2, 1, 0.5 cm or less of a border/perimeter of the hydrogel) the site of hydrogel administration compared to the level in the tissues prior to administration of the hydrogel.


The treatment of non-healing wounds, such as diabetic foot ulcers, requires a sophisticated therapy able to target ischemia, chronic infection, and adequate offloading (i.e., reduction of pressure) (Falanga et al. The Lancet. 2005; 366:1736-43). The biomaterial system, e.g., hydrogel, harnesses the mechanical properties of materials, e.g., advanced wound dressing materials, to treat non-healing wounds. In some examples, the hydrogels are used in concert with bioactive compositions, growth factor or cells (Kearney et al. Nature Materials. 2013; 12:1004-17).


Bioactive compositions are purified naturally-occurring, synthetically produced, or recombinant compounds, e.g., polypeptides, nucleic acids, small molecules, or other agents. The compositions described herein are purified. Purified compounds are at least 60% by weight (dry weight) the compound of interest. Preferably, the preparation is at least 75%, more preferably at least 90%, and most preferably at least 99%, by weight the compound of interest. Purity is measured by any appropriate standard method, for example, by column chromatography, polyacrylamide gel electrophoresis, or HPLC analysis.


This invention provides a method to control the behavior of fibroblasts involved in the wound healing response by tuning the storage modulus of a material, e.g., wound dressing material. Material systems have been developed to help understand how extracellular matrix mechanics regulates cell behaviors, from migration (Lo et al. Biophysical Journal. 2000; 79:144-52; Gardel et al. The Journal of cell biology. 2008; 183:999-1005) to differentiation (Engler et al. Cell. 2006; 126:677-89; Huebsch et al. Nature Materials. 2010; 9:518-26). However, these material systems do not allow the decoupling of matrix stiffness from altered ligand density, polymer density or scaffold architecture. Other types of materials, such as synthetic wound dressing materials are available, e.g., made exclusively of non-biological molecules or polymers. For example, a typical synthetic wound dressing is made of nonwoven fibers (e.g., composed of polyester, polyamide, polypropylene, polyurethane, and/or polytetrafluoethylene) and semipermeable filsm. An example of a synthetic skin substitute is BIOBRANE™, which has an inner layer of nylon mesh and an outer layer of silastic. See, e.g., Halim et al. Indian J Plast Surg. 2010; 43:S23-S8. Synthetic polymers allow for consistent variance and control of their composition and properties, but they lack naturally occurring matrix elements and natural tissue (e.g., skin) architecture that are required for cells to sense or respond to biological signals. Instead, the synthetic materials are a full artificial microenvironment/structure. This invention achieves this decoupling/separation by designing interpenetrating network (IPN) hydrogels, which are made up of two or more polymer networks that are not covalently bonded but at least partially interconnected (Wilkinson ADMaA. IUPAC. Compendium of Chemical Terminology. 2nd ed. Oxford, UK Blackwell Scientific Publications; 1997). For example, a biomaterial system composed of interpenetrating networks of collagen and alginate was developed. The alginate (e.g., sodium alginate) polymeric backbone presents no intrinsic cell-binding domains, but can be used to regulate gel mechanical properties. The collagen (e.g., collagen-I) presents specific peptide sequences recognized by cells surface receptors, and provides a substrate for cell adhesion that recreates the fibrous mesh of many in vivo contexts. Both of these components are biocompatible, biodegradable and widely used in the tissue engineering field. Encapsulated cells sense, adhere and pull on the collagen fibrils, and depending on the degree of crosslinking of the intercalated alginate mesh, cells will feel more or less resistance to deformation from the matrix. The alginate backbone is ionically crosslinked by ions, e.g., divalent cations (e.g., Ca+2). Thus, solely changing the concentration of Ca+2 modulates the stiffness of the IPN. In some cases, dermal fibroblasts are recruited to the wound site for the synthesis, deposition, and remodeling of the new extracellular matrix (Singer et al. New England Journal of Medicine. 1999; 341:738-46). Dermal fibroblasts are an important cell player in the wound healing response.


The in vitro behavior of primary fibroblasts isolated from the dermis of healthy non-diabetic donors when encapsulated within IPNs of varying stiffness, partially mimicked the response of fibroblasts migrating into a wound site in vivo. In particular, primary fibroblasts isolated from the dermis of heathy adult patients were able to grow and survive within the interconnected network of the IPNs. Different storage moduli of different IPNs promoted dramatic changes in the morphology of fibroblasts, and triggered different wound healing genetic programs, including altered expression of inflammation mediators, e.g., IL10 and COX2. Enhancing the number of binding sites to which the fibroblasts could adhere did not subdue the effects of mechanics on cell spreading and contraction. Simply tuning the storage modulus of the hydrogels described herein, e.g., in cutaneous wound dressings, controls (e.g., promotes or hinders) the different stages of the wound healing response.


The term “isolated” used in reference to a cell type, e.g., a fibroblast, means that the cell is substantially free of other cell types or cellular material with which it naturally occurs. For example, a sample of cells of a particular tissue type or phenotype is “substantially pure” when it is at least 60% of the cell population. Preferably, the preparation is at least 75%, more preferably at least 90%, and most preferably at least 99% or 100%, of the cell population. Purity is measured by any appropriate standard method, for example, by fluorescence-activated cell sorting (FACS). Optionally, the hydrogel is seeded with two or more substantially pure populations of cells. The populations are spatially or physically separated, e.g., one population is encapsulated, or the cells are allowed to come into with one another. The hydrogel or structural support not only provides a surface upon which cells are seeded/attached but indirectly affects production/education of cell populations by housing a second (third, or several) cell population(s) with which a first population of cells associates (cell-cell adhesion).


In accordance with the methods of the invention, hydrogels described herein are administered, e.g., implanted, e.g., orally, systemically, sub- or trans-cutaneously, as an arterial stent, surgically, or via injection. In some examples, the hydrogels described herein are administered by routes such as injection (e.g., subcutaneous, intravenous, intracutaneous, percutaneous, or intramuscular) or implantation.


In one embodiment, administration of the device is mediated by injection or implantation into a wound or a site adjacent to the wound. For example, the wound is external or internal. In other embodiments, the hydrogel is placed over a wound, e.g, covering at least 50% (e.g., at least 50%, 60%, 70%, 80%, 90%, or 100%, or greater) of the surface area of the wound.


The hydrogels of the invention enhance the viability of passenger cells (e.g., fibroblasts, e.g., dermal fibroblasts, or epithelial cells such as mammary epithelial cells) and induce their outward migration to populate injured or defective bodily tissues to enhance the success of tissue regeneration and/or wound healing. Such a hydrogel that controls cell function and/or behavior, e.g., locomotion, growth, or survival, optionally also contains one or more bioactive compositions. The bioactive composition is incorporated into or coated onto the hydrogel. The hydrogel and/or bioactive composition temporally and spatially (directionally) controls egress of a resident cell (e.g., fibroblast) or progeny thereof. At the end of a treatment period, the hydrogel has released a substantial number of the passenger cells that were originally used to seed the hydrogel, e.g., there is a net efflux of passenger cells. For example, the hydrogel releases 10% or more (e.g., 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 100%, 200%, 300%, 400%, or more) of the seeded passenger cells by the end of a treatment period compared to at the commencement of treatment. In another example, the hydrogel contains 50% or less (e.g., 50%, 40%, 30%, 25%, 20%, 15%, 10%, 5%, 2.5%, 1%, or less) of the seeded passenger cells at the end of a treatment period compared to at the commencement of treatment. In some cases, a greater number of cells can be released than originally loaded if the cells proliferate after being placed in contact with the hydrogel.


In some cases, the hydrogels mediate modification and release of host cells from the material in vivo, thereby improving the function of cells that have resided in the hydrogels. For example, the hydrogel temporally and spatially (directionally) controls fibroblast migration. For example, the hydrogel mediates release of fibroblasts from the material in vivo.


Depending on the application for which the hydrogel is designed, the hydrogel regulates egress through its physical or chemical characteristics. For example, the hydrogel is differentially permeable, allowing cell egress only in certain physical areas of the hydrogel. The permeability of the hydrogel is regulated, for example, by selecting or engineering a material for greater or smaller pore size, density, polymer cross-linking, stiffness, toughness, ductility, or viscoelascticity. The hydrogel contains physical channels or paths through which cells can move more easily towards a targeted area of egress of the hydrogel or of a compartment within the hydrogel. The hydrogel is optionally organized into compartments or layers, each with a different permeability, so that the time required for a cell to move through the hydrogel is precisely and predictably controlled. Migration is also regulated by the degradation, de- or re-hydration, oxygenation, chemical or pH alteration, or ongoing self-assembly of the hydrogel. These processes are driven, e.g., by diffusion or cell-secretion of enzymes or other reactive chemicals.


Porosity of the hydrogel influences migration of the cells through the device and egress of the cells from the device. Pores are nanoporous, microporous, or macroporous. In some cases, the pores are a combination of these sizes. For example, the pores of the scaffold composition are large enough for a cell, e.g., fibroblast, to migrate through. For example, the diameter of nanopores are less than about 10 nm; micropores are in the range of about 100 nm-20 μm in diameter; and, macropores are greater than about 20 μm (preferably greater than about 100 μm and even more preferably greater than about 400 μm). In one example, the scaffold composition is macroporous with aligned pores of about 400-500 μm in diameter. In another example, the pores are nanoporous, e.g., about 20 μm to about 10 nm in diameter.


Alternatively or in addition, egress is regulated by a bioactive composition. By varying the concentration of growth factors, homing/migration factors, morphogens, differentiation factors, oligonucleotides, hormones, neurotransmitters, neurotransmitter or growth factor receptors, interferons, interleukins, chemokines, cytokines, colony stimulating factors, chemotactic factors, extracellular matrix components, adhesion molecules and other bioactive compounds in different areas of the hydrogel. The hydrogel controls and directs the migration of cells through its structure. Chemical affinities are used to channel cells towards a specific area of egress. For example, adhesion molecules are used to attract or retard the migration of cells. By varying the density and mixture of those bioactive substances, the hydrogel controls the timing of the migration and egress. In other cases, adhesion molecules are not attached to the alginate or collagen in the hydrogel. Rather, the collagen naturally contains cell adhesive properties and attracts/retards migration of cells. The density and mixture of the bioactive substances is controlled by initial doping levels or concentration gradient of the substance, by embedding the bioactive substances in hydrogel material with a known leaching rate, by release as the hydrogel material degrades, by diffusion from an area of concentration, by interaction of precursor chemicals diffusing into an area, or by production/excretion of compositions by resident support cells. The physical or chemical structure of the hydrogel also regulates the diffusion of bioactive agents through the hydrogel.


Signal transduction events that participate in the process of cell motility are initiated in response to cell growth and/or cell differentiation factors. Thus, the hydrogel optionally contains a second bioactive composition that is a growth factor, morphogen, differentiation factor, or chemoattractant. For example, the hydrogel includes vascular endothelial growth factor (VEGF), hepatocyte growth factor (HGF), or fibroblast growth factor 2 (FGF2) or a combination thereof. Other factors include hormones, neurotransmitters, neurotransmitter or growth factor receptors, interferons, interleukins, chemokines, MMP-sensitive substrate, cytokines, colony stimulating factors. Growth factors used to promote angiogenesis, bone regeneration, wound healing, and other aspects of tissue regeneration are listed herein and are used alone or in combination to induce colonization or regeneration of bodily tissues by cells that have migrated out of an implanted hydrogel.


The hydrogel is biocompatible. The hydrogel is bio-degradable/erodable or resistant to breakdown in the body. Preferably, the hydrogel degrades at a predetermined rate based on a physical parameter selected from the group consisting of temperature, pH, hydration status, and porosity, the cross-link density, type, and chemistry or the susceptibility of main chain linkages to degradation or it degrades at a predetermined rate based on a ratio of chemical polymers. For example, a calcium cross-linked gels composed of high molecular weight, high guluronic acid alginate degrade over several months (1, 2, 4, 6, 8, 10, 12 months) to years (1, 2, 5 years) in vivo, while a gel comprised of low molecular weight alginate, and/or alginate that has been partially oxidized, will degrade in a matter of weeks.


In one example, cells mediate degradation of the hydrogel matrix, i.e., the hydrogel is enzymatically digested by a composition elicited by a resident cell, and the egress of the cell is dependent upon the rate of enzymatic digestion of the hydrogel. In this case, polymer main chains or cross-links contain compositions, e.g., oligopeptides, that are substrates for collagenase or plasmin, or other enzymes produced by within or adjacent to the hydrogel.


The hydrogel are manufactured in their entirety in the absence of cells or can be assembled around or in contact with cells (the material is gelled or assembled around cells in vitro or in vivo in the presence of cells and tissues) and then contacted with cells to produce a cell-seeded structure. Alternatively, the hydrogel is manufactured in two or more (3, 4, 5, 6, . . . 10 or more) stages in which one layer or compartment is made and seeded with cells followed by the construction of a second, third, fourth or more layers, which are in turn seeded with cells in sequence. Each layer or compartment is identical to the others or distinguished from one another by the number, genotype, or phenotype of the seed cell population as well as distinct chemical, physical and biological properties. Prior to implantation, the hydrogel is contacted with purified populations cells or characterized mixtures of cells as described above. Preferably, the cells are human; however, the system is adaptable to other eukaryotic animal cells, e.g., canine, feline, equine, bovine, and porcine, as well as prokaryotic cells such as bacterial cells.


Therapeutic applications of the hydrogel include tissue generation, regeneration/repair, as well as augmentation of function of a mammalian bodily tissue in and around a wound.


In some cases, the cells (e.g., fibroblasts) remain resident in the hydrogel for a period of time, e.g., minutes; 0.2. 0.5, 1, 2, 4, 6, 12, 24 hours; 2, 4, 6, days; weeks (1-4), months (2, 4, 6, 8, 10, 12) or years, during which the cells are exposed to structural elements and, optionally, bioactive compositions that lead to proliferation of the cells, and/or a change in the activity or level of activity of the cells. The cells are contacted with or exposed to a deployment signal that induces egress of the optionally altered (re-educated or reprogrammed) cells and the cells migrate out of the hydrogel and into surrounding tissues or remote target locations.


The deployment signal is a composition such as protein, peptide, or nucleic acid. In some cases, the deployment signal is a nucleic acid molecule, e.g., a plasmid containing sequence encoding a protein that induces migration of the cell out of the hydrogel and into surrounding tissues. The deployment signal occurs when the cell encounters the plasmid in the hydrogel, the DNA becomes internalized in the cell (i.e., the cell is transfected), and the cell manufactures the gene product encoded by the DNA. In some cases, the molecule that signals deployment is an element of the hydrogel and is released from the device in controlled manner (e.g., temporally or spatially).


Cells (e.g., fibroblasts) contained in the hydrogel described herein promote regeneration of a tissue or organ (e.g., a wound) immediately adjacent to the material, or at some distant site.


The stiffness and elasticity of materials, such as the hydrogels described herein, are determined by applying a stress (e.g., oscillatory force) to the material and measuring the resulting displacement (i.e., strain). The stress and strain occur in phase in purely elastic materials, such that the response of one (stress or strain) occurs simultaneously with the other. In purely viscous materials, a phase difference is detected between stress and strain. The strain lags behind the stress by a 90 degree (radian) phase lag. Viscoelastic materials have behavior in between that of purely elastic and purely viscous—they exhibit some phase lag in strain. The storage modulus in viscoelastic solid materials are a measure of the stored energy, representing the elastic portion, while the loss modulus in viscoelastic solids measure the energy dissipated as heat, representing the viscous portion. The storage modulus represents the stiffness of a viscoelastic material and is proportional to the energy stored during a stress/displacement.


For example, the storage and loss moduli are described mathematically as follows:


Storage modulus:







E


=



σ
0


ε
0



cos

δ





Loss modulus:







E


=



σ
0


ε
0



sin

δ





Phase Angle:






δ
=

arctan



E



E





,




where stress is: σ=σ0 sin(tω+δ),


strain is: ε=ε0 sin(tω),


ω is frequency of strain oscillation, t is time, and δ is phase lag between stress and strain. See, e.g., Meyers and Chawla (1999) Mechanical Behavior of Materials. 98-103).


The storage modulus of a hydrogel is altered by varying the type of polymer used with alginate to form an IPN, e.g., type of collagen, or MATRIGEL™. In other examples, the storage modulus is altered by increasing or decreasing the molecular weight of the alginate. For example, the alginate is at least about 30 kDa, e.g., at least about 30, 40, 50, 60, 70, 80, 90, 100, 120, 140, 160, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300 kDa, or greater. For example, the molecular weight of the alginate is at least about 100 kDa, e.g., at least about 100, 120, 140, 160, 180, 190, 200, 210, 220, 230, 240, 250, 260, 270, 280, 290, 300 kDa, or greater. For example, the molecular weight of the alginate is about 200 kDa, 250 kDa, or 280 kDa. In other cases, the storage modulus is altered by increasing or decreasing the concentration of alginate, e.g., from about 1-15 mg/mL, or by increasing or decreasing the concentration of collagen/MATRIGEL™, e.g., from about 1-15 mg/mL. The storage modulus is also altered, e.g., by increasing or decreasing the type and concentration of cation used to crosslink the gel, e.g., by using a divalent versus trivalent ion, or by increasing or decreasing the concentration of the ion, e.g., from about 2-10 mM. In some cases, cation concentrations (e.g., Ca2+) of about 2-3 mM produce storage moduli of about 20-50 Pa, cation concentrations of about 4-5 mM produce storage moduli of about 200-300 Pa, cation concentration of about 7-8 mM produce storage moduli of about 300-600 Pa, and cation concentrations of about 9-10 mM produce storage moduli of about 1000-1200 Pa in hydrogels described herein, e.g., when storage moduli are measured at a frequency of 0.01 to 1 Hz, and e.g., when the concentration of alginate is about 5 mg/mL and the concentration of collagen is about 1.5 mg/mL, i.e., at a weight ratio of about 3.3 alginate to collagen.


In some examples, the hydrogel described herein is viscoelastic. For example, viscoelasticity is determined by using frequency dependent rheology. Collagen is a protein found in the extracellular matrix and is ubiquitously expressed in connective tissues. Collagens help tissues to withstand stretching. There are at least 16 types of collagen, and the most abundant type is Type I collagen (also called collagen-I). Collagen (e.g., collagen-I) is present in most tissues, primarily bone, tendon, and skin. The collagen molecules pack together, forming thin, long fibrils. Collagen (e.g., collagen I) is isolated, e.g., from rat tail. The fundamental structure of collagen-I is a long (˜300 nm) and thin (˜1.5 nm diameter) protein made up of three coiled subunits: two α1(I) chains and one α2(I). Each subunit contains 1050 amino acids and is wound around each other to form a right-handed triple helix structure. See, e.g., “Collagen: The Fibrous Proteins of the Matrix.” Molecular Cell Biology. Lodish et al., eds. New York: W.H. Freeman. Section 22.3 (2000); and Venturoni et al. Biochemical and Biophysical Research Communications 303 (2003) 508-513. The al chain of collagen-I has a molecular weight of about 140 kDa. The a2 chain of collagen-I has a molecular weight of about 130 kDa. Collagen-I as a trimer has a molecular weight of about 400 kDa. Collagen-I as a dimer has a molecular weigth of a bout 270 kDa. In some examples, the collagen in the hydrogels described herein include fibrillar collagen. Exemplary types of fibrillar collagen include collagen types I-III, V, XI, XXIV, and XXVII. See, e.g., Exposito, et al. Int. J. Mol. Sci. 11(2010):407-426.


The term, “about”, as used herein, refers to a stated value plus or minus another amount; thereby establishing a range of values. In certain preferred embodiments “about” indicates a range relative to a base (or core or reference) value or amount plus or minus up to 15%, 14%, 13%, 12%, 11%, 10%, 9%, 8%, 7%, 6%, 5%, 4%, 3%, 2%, 1%, 0.75%, 0.5%, 0.25% or 0.1%.


The following materials and methods were used in generating the data described in the Examples.


Cell Culture

Human dermal fibroblasts (Zenbio) were cultured according to the manufacturer's protocol, and used between passages 6 and 11. For routine cell culture, cells were cultured in dermal fibroblasts culture medium (Zenbio), which contains specific growth factors necessary for optimal expansion of human dermal fibroblasts. Cells were maintained at sub-confluency in the incubator at 37° C. and 5% CO2. The culture medium was refreshed every three days.


Alginate Preparation

High molecular weight (LF20/40) sodium alginate was purchased from FMC Biopolymer. Alginate was dialyzed against deionized water for 2-3 days (molecular weight cutoff of 3,500 Da), treated with activated charcoal, sterile filtered (0.22 μm), lyophilized, and then reconstituted in DMEM serum free media at 2.5% wt.


IPN Preparation

All inter-penetrating networks (IPNs) in this study consisted of 1.5 mg/ml rat-tail collagen-I (BD Biosciences), and 5 mg/ml high molecular weight alginate (FMC Biopolymer). The IPN matrix formation process consisted of two steps. In the first step, reconstituted alginate (2.5% wt in serum-free DMEM) was delivered into a centrifuge tube and put on ice. Rat-tail collagen-I was mixed with a 10×DMEM solution in a 1:10 ratio to the amount of collagen-I needed, pH was then adjusted to 7.4 using a 1M NaOH solution. The rat-tail collagen-I solution was thoroughly mixed with the alginate solution. Since the rat-tail collagen-I concentrations varied between batches, different amounts of DMEM were then added to the collagen-alginate mixture to achieve the final concentration of 1.5 mg/ml rat-tail collagen-I in the IPN. Once the collagen-alginate mixture was prepared, the human dermal fibroblasts were washed, trypsinized (0.05% trypsin/EDTA, Invitrogen), counted using a Z2 Coulter Counter (Beckman Coulter), and resuspended at a concentration of 3×106 cells per ml in cell culture medium. Cells were mixed with the collagen-alginate mixture. The collagen-alginate-cells mixture was then transferred into a pre-cooled 1 ml luer lock syringe (Cole-Parmer).


In the second step, a solution containing calcium sulfate dihydrate (Sigma), used to crosslink the alginate network, was first prepared as follows. Calcium sulfate dihydrate was reconstituted in water at 1.22 M and autoclaved. For each IPN, 100 μl of DMEM containing the appropriate amount of the calcium sulfate slurry was added to a 1 ml luer lock syringe. The syringe with the calcium sulfate solution was agitated to mix the calcium sulfate uniformly, and then the two syringes were connected together with a female-female luer lock coupler (Value-plastics). The two solutions were mixed rapidly and immediately deposited into a well in a 48-well plate. The plate was then transferred to the incubator at 37° C. and 5% CO2 for 60 minutes to allow gelation, after which medium was added to each gel. Medium was refreshed every two days.


Scanning Electron Microscopy

For scanning electron microscopy, IPNs were fixed in 4% paraformaldehyde (PFA), washed several times in PBS, and serially transitioned from dH2O into absolute ethanol with 30 min incubations in 30, 50, 70, 90, and 100% ethanol solutions. Ethanol dehydrated IPNs were dried in a critical point dryer and adhered onto sample stubs using carbon tape. Samples were sputter coated with 5 nm of platinum-palladium and imaged using secondary electron detection on a Carl Zeiss Supra 55 VP field emission scanning electron microscope (SEM).


Elemental Analysis

For elemental analysis, IPNs were fixed in 4% paraformaldehyde (PFA), washed several times in PBS, quickly washed with dH2O, froze overnight at −20° C. and lyophilized. Elemental analysis was performed using a Tescan Vega3 Scanning Electron Microscope (SEM) equipped with a Bruker Nano XFlash 5030 silicon drift detector Energy Dispersive Spectrometer (EDS).


Mechanical Characterization of IPNs

The mechanical properties of the IPNs were characterized with an AR-G2 stress controlled rheometer (TA Instruments). IPNs without cells were formed as described above, and directly deposited onto the pre-cooled surface plate of the rheometer. A 20 mm plate was immediately brought into contact before the IPN started to gel, forming a 20 mm disk of IPN. The plate was warmed to 37° C., and the mechanical properties were then measured over time. The storage modulus at 0.5% strain and at 1 Hz was recorded every minute until it reached its equilibrium value (30-40 min). A strain sweep was performed to confirm that this value was within the linear elastic regime, followed by a frequency sweep.


Analysis of Macromolecular Transport in IPNs

The diffusion coefficient of 70 kDa fluorescently labeled anionic dextran (Invitrogen) through IPNs used in this study (50 Pa-1200 Pa) was measured. For these studies, IPNs of varying mechanical properties encapsulating 0.2 mg/ml fluorescein-labeled dextran were prepared in a standard tissue culture 48 well-plate. IPNs were allowed to equilibrate at 37° C. for one hour, before serum-free phenol red-free medium was added to the well. Aliquots of this media were taken periodically to measure the molecular diffusion of dextran from the hydrogels into the media. Samples were continuously agitated using an orbital shaker, and fluorescein-labeled dextran concentration was measured using a fluorescence plate reader (Biotek). The measurements were interpreted using the semi-infinite slab approximation as described previously (Crank J. The mathematics of diffusion. 2nd Edition. Oxford University Press: Clarendon Press. 1979).


Immunohistochemistry

The IPNs were fixed in 4% paraformaldehyde for 1 hour at room temperature and washed in PBS overnight at 4° C. The gels were embedded in 2.5% low gelling temperature agarose (Lonza) by placing the gels in liquid agarose in a 40° C. water bath for several hours and subsequent gelling at 4° C. A Leica vibratome was used to cut 200 μm sections. The F-actin cytoskeleton of embedded cells was visualized by probing sections with Alexa Fluor 488 conjugated Phalloidin (Invitrogen). Cell nuclei were stained with Hoechst 33342 (Invitrogen). To visualize the distribution of alginate within the IPN gels, gels were made using FITC-labeled alginate. To visualize the distribution of collagen-I fibers within the IPN gels, the collagen meshwork was probed with a rabbit anti-collagen-I polyclonal antibody (Abcam) and stained with an Alexa Fluor 647 conjugated goat-anti-rabbit IgG, after vibratome sectioning. Fluorescent micrographs were acquired using an Upright Zeiss LSM 710 confocal microscope.


Cell Retrieval for Gene Expression and Flow Cytometry Analysis.

To retrieve the fibroblasts encapsulated within the IPN, the culture media was first removed from the well and the IPNs were washed once with PBS. Next the IPNs were transferred into a falcon tube containing 10 ml of 50 mM EDTA in PBS in which they remained for 30 minutes on ice. The resulting solution was then centrifuged and the supernatant removed. The remaining gel pieces were then incubated with a solution of 500 U/mL Collagenase type IV (Worthington) in serum free medium for 30 minutes at 37° C. and 5% CO2, vigorously shaking to help disassociate the gels. The resulting solution was then centrifuged and the enzyme solution removed. The cell pellet was immediately placed on ice.


For RNA expression analysis, the retrieved cells were then lysed using Trizol, and RNA was extracted following the manufacturer's guidelines (Life Technologies). For flow cytometry, the cell pellet was further filtered through a 40 μm cell strainer and then analyzed using a using a BD LSR II flow cytometer instrument. A monoclonal anti-human COX2 antibody (clone AS66, abcam) was used, followed by an Alexa Fluor 647 conjugated goat-anti-mouse IgG secondary antibody (LifeTechnologies).


qPCR


RNA was quantified using a NanoDrop ND-1000 Spectrophotometer. Reverse transcription was carried out with the RT2 First Strand Kit from Qiagen, 200 ng of total RNA were used per sample. The expression profile of a panel of genes was assessed with the Human Wound Healing PCR Array from Qiagen, on a 96-well plate format and using an ABI7900HT thermocycler from Applied Biosystems.


ELISA

Cell supernatant was collected and analyzed for IL-10 using ELISA (eBioscience 88-7106) according to manufacturer's directions. Briefly, high binding 96-well plates (Costar 2592) were coated with anti-human IL-10 and subsequently blocked with BSA. IL-10 standards and supernatant were loaded and detected with biotin conjugated anti-human IL-10. At least 5 replicates were used for each condition.


Wound Healing Materials

The materials described herein provide a new approach to aid and enhance wound healing for the treatment of chronic non-healing wounds. Diabetic ulcers, ischemia, infection and/or continued trauma contribute to the failure to heal and demand sophisticated wound care therapies. Using the IPNs described herein, the behavior of dermal fibroblasts can be controlled simply by tuning the storage moduli of a model wound dressing material containing such IPNs. The stiffness of the dressing materials can be designed to match the stiffness of an injured tissue based on site of injury, condition of the subject (e.g., type of injury), age of the subject. In addition to cutaneous wound healing, the materials described herein are useful for aiding wound healing in other tissues, e.g., bony, cartilaginous, soft, vascular, or mucosal tissue.


The wound dressing market is expanding rapidly and is estimated to be valued at $21.6 billion by 2018. Current developments in the field include wound dressing materials that incorporate antimicrobial, antibacterial, and anti-inflammatory agents. However, the importance of mechanical forces in the context of wound dressing design has been overlooked.


The material system described herein includes, e.g., an interpenetrating network (IPN) of two polymers (e.g., collagen and alginate) that are not covalently bonded but fully interconnected. Such IPNs allow for the decoupling of the effects of gel stiffness from gel architecture, porosity and adhesion ligand density. For example, both types of polymers used in the IPNs are biocompatible, biodegradable and widely used in the tissue engineering field. In some material systems, bulk stiffness can be controlled by increasing or decreasing the polymer concentration—however, this also changes the scaffold architecture and porosity. Other material systems permit the independent control of stiffness but lack a naturally occurring extracellular matrix element that is required to closely mimic the biological tissue microenvironment.


In some examples, the approach described herein is used in concert with biomaterial-based spatiotemporal control over the presentation of bioactive molecules, growth factor or cells, although use the gels in combination with bioactive molecules or cells is not required for an effect on wound healing. Wound dressing materials that significantly enhance the wound healing response are made by solely tuning the stiffness of a wound dressing material comprising the hydrogels described herein, e.g., without the addition of any other bioactive molecules, growth factors, or cells.


The invention will be further illustrated in the following non-limiting examples.


Example 1: Calcium Crosslinking Controlled Gel Mechanical Properties Independent of Gel Structure

The microarchitecture of the alginate/collagen-I interpenetrating networks was assessed by scanning electron microscopy (SEM). SEM of hydrogels composed entirely of 0.5 mg/ml of alginate had an interconnected nanoporous scaffold structure (FIG. 1A). SEM of hydrogels composed entirely of 1.5 mg/ml collagen-I had a highly porous, randomly organized fribrillar network (FIG. 1A). SEM of the alginate/collagen-I interpenetrating networks had a true interpenetration of both components, with an interconnected nanoporous alginate mesh fully intercalated by multidirectional collagen-I fibrils (FIG. 1A). The dehydration and drying steps used to prepare the samples for SEM can cause shrinkage and consequent collapse of the porous structure of the hydrogels. However, since all samples were processed simultaneously and in the same fashion, these effects were expected to be similar across the different conditions analyzed.


The alginate network was crosslinked by divalent cations, such as calcium (Ca+2) that preferentially intercalate between the guluronic acid residues (“G-blocks”). Elemental mapping analysis of alginate/collagen-I interpenetrating networks, crosslinked to different extents with Ca+2, confirmed that different amounts of calcium were present inside the interpenetrating network (FIG. 1B). The amount of calcium detected in the sample for which the alginate network was not crosslinked was likely due to residual amounts of calcium ions present in the culture media in which the hydrogels were immersed to equilibrate overnight.


To establish the microscale distribution of the alginate chains within the interpenetrating networks, FITC-labeled alginate mixed with unlabeled collagen-I was visualized. In order to prevent any disruption on the architecture of the alginate mesh, the hydrogels were not washed, fixed or sectioned, but rather imaged directly after one hour of gelation at 37° C. The mixture of the two components showed no microscale phase separation independently of the extent of calcium crosslinking (FIGS. 2A and 6A), as shown on the histogram of fluorescent alginate intensity per pixel. Furthermore, FastGreen staining was used to visualize the protein content within the interpenetrating networks. Protein staining was uniform throughout the entire cross-section of these hydrogels, across the range of calcium crosslinking used (FIGS. 2B and 6B), as shown on the histogram of fast green intensity per pixel. A slight change in the peak location on the fast green intensity histogram was observed between the soft (crosslinked with 2.44 mM CaSO4) and the stiff (crosslinked with 9.76 mM CaSO4) samples, but the presence of only one peak in both samples indicated that there was an even distribution of the protein content along the hydrogel. Finally, a specific anti-collagen-I antibody staining was used to visualize the microarchitecture of the collagen network. Confocal fluorescence microscopy revealed a homogenous fribrillar mesh of collagen-I throughout the entire cross-section of the hydrogels, without any distinct patches of collagen-I (FIG. 2C). Thus, the networks were fully interpenetrating, independently of the degree of crosslinking of the alginate component.


To determine whether tuning the alginate crosslinking by varying the calcium concentration caused changes in gel pore size, macromolecular transport through the interpenetrating networks was analyzed. In particular, the diffusion coefficient of anionic high molecular weight dextran (70 kDa) through the various hydrogels was measured. No statistically significant differences in the diffusion coefficient of the dextran among the various interpenetrating networks of different stiffness were found (FIG. 2D), indicating that the pore size was constant as the concentration of calcium varied.


The mechanical properties of the alginate/collagen-I interpenetrating networks were assessed by rheology to determine if variations in calcium crosslinking would yield hydrogels with different moduli. The frequency dependent storage modulus of the different interpenetrating networks demonstrated that this biomaterial system exhibited stress relaxation, and that the viscoelastic behavior of these materials was independent of the extent of crosslinking (FIG. 3A). At a fixed frequency of 1 Hz across a time period of 60 minutes, the storage modulus was tuned from 50 to 1200 Pa by merely changing the initial concentration of calcium, while maintaining a constant polymer composition (FIG. 3B). The storage modulus of the pure collagen-I hydrogels was slightly higher than the alginate/collagen-I interpenetrating network with none or low amounts (2.44 mM) of CaSO4, likely because the presence of the alginate chains plasticized the collagen-I network. The timecourse of gelation of the interpenetrating networks across a range of calcium crosslinker concentration was further assessed, and complete gelation of the matrices was achieved after 40-50 minutes at 37° C. (FIG. 7).


Example 2: Fibroblasts Morphology Varied with IPN Moduli

Human adult dermal fibroblasts isolated from the dermis of healthy non-diabetic donors were subsequently encapsulated within these alginate/collagen-I interpenetrating networks to examine the impact of gel mechanical properties on the cells' biology. Fibroblasts exhibited an elongated, spindle-like phenotype after a few hours of culture in the gels of lowest storage modulus (FIG. 4A). These softer matrices collapsed after a few days of culture, suggesting that the encapsulated cells were exerting traction forces on the matrix, contracting it and crawling out of hydrogel (FIG. 8A). In IPNs of increased stiffness, fibroblasts exhibited a spherical cell shape (FIG. 4A), up to at least 5 days of culture. Cells within these stiffer matrices failed to form stress fibers, as shown by confocal microscopy of F-actin staining of cryosections. These effects were not due to the higher concentrations of Ca+2 in the stiffer interpenetrating networks, as when the highest amount of Ca+2 (9.76 mM) was incorporated within hydrogels containing only collagen-I and dermal fibroblasts, cells were still able to spread and contract the matrix (FIG. 8B).


The fibroblasts encapsulated inside interpenetrating networks of different moduli were then retrieved and analyzed after 48 hours of culture. No statistically significant differences regarding cell number between matrices of different storage modulus were observed (FIG. 8C), and virtually all the cells encapsulated in interpenetrating networks of different moduli were alive after 48 hours of culture (FIG. 4B). As the attachment of primary fibroblasts to collagen type I is mediated by non-RGD-dependent β1 integrin matrix receptors (Jokinen et al. Journal of Biological Chemistry. 2004; 279:31956-63), flow cytometry measurements were used to analyze expression of this cell surface receptor. All the cells encapsulated in interpenetrating networks of different moduli expressed integrin (31 receptors, with no significant differences between their mean fluorescence intensity (FIGS. 4C and 8D).


To examine potential effects of altered cell adhesion ligand number in IPNs on the fibroblasts morphology, RGD cell adhesion motifs were coupled to the alginate prior to IPN formation. No differences in the phenotype of encapsulated fibroblasts between interpenetrating networks composed of unmodified and RGD-modified alginate chains were observed, independently of moduli tested (FIG. 8E).


Example 3: Wound Healing-Related Genetic Programs Varied with IPN Moduli

Experiments were performed to determine if the changes in cell spreading due to stiffness were accompanied by different gene expression profiles. Real-time reverse transcription polymerase chain reaction (RT-PCR) was used to analyze the expression of a panel of 84 genes important for each of the three phases of wound healing, including extracellular matrix remodeling factors, inflammatory cytokines and chemokines, as well as key growth factors and major signaling molecules. The gene screening revealed 15 genes displaying at least 2-fold difference in gene expression between dermal fibroblasts encapsulated in interpenetrating networks with storage moduli of 50 versus 1200 Pa (FIG. 5A). The expression of 11 genes was up-regulated in 1200 Pa versus 50 Pa gels, and expression of 4 genes was down-regulated in 1200 Pa versus 50 Pa gels. The genes which were down-regulated were chemokine ligand 2 (CCL2), colony stimulating factor 2 (CSF2), connective tissue growth factor (CTGF) and transgelin (TAGLN). A subset of three of the up-regulated genes is known to be involved in inflammation cascades: interleukin 10 (IL10), interleukin 1β (ILB1), and prostaglandin-endoperoxide synthase 2 (PTGS2) also known as COX2. A subset of collagen encoding genes was also up-regulated: collagen type IV, alpha 1 (COL4A1), collagen type IV, alpha 3 (COL4A3) and collagen type V, alpha 3 (COL5A3). Another subset of up-regulated genes represents cell adhesion and extracellular matrix molecules: integrin a4 (ITGA4), matrix metallopeptidase 1 (MMP1) and vitronectin (VTN). The remaining up-regulated genes were hepatocyte growth factor (HGF) and a member of the WNT gene family (WNTSA).


To validate the gene expression results, protein expression for IL10 and COX2 was analyzed. The amount of IL10 protein secreted into the culture medium by dermal fibroblasts encapsulated in interpenetrating networks of different storage modulus was measured by enzyme linked immunoassay (ELISA) (FIG. 5B), and enhanced matrix stiffness promoted a 3-fold increase in the production and secretion of this anti-inflammatory cytokine. Stiffening of the matrix also led to an increase in the number of cells expressing COX2 (FIGS. 4B and 9A) and an increase in the expression level in the cells staining positive for this inflammation-associated enzyme (FIG. 5C).


Other Embodiments

While the invention has been described in conjunction with the detailed description thereof, the foregoing description is intended to illustrate and not limit the scope of the invention, which is defined by the scope of the appended claims. Other aspects, advantages, and modifications are within the scope of the following claims.

Claims
  • 1. A 3-dimensional hydrogel comprising an interpenetrating network of alginate and collagen, wherein the hydrogel comprises a storage modulus of 30 Pa or greater.
  • 2. The hydrogel of claim 1, wherein the hydrogel comprises a storage modulus of 400 Pa or less.
  • 3. The hydrogel of claim 1, wherein the alginate lacks a cell adhesion molecule.
  • 4. The hydrogel of claim 3, wherein the cell adhesion molecule comprises a polypeptide comprising the amino acid sequence, arginine-glycine-aspartate (RGD).
  • 5. The hydrogel of claim 1, wherein the hydrogel does not comprise any covalent crosslinks.
  • 6. The hydrogel of claim 1, wherein the alginate is crosslinked to form a mesh structure.
  • 7. The hydrogel of claim 6, wherein the alginate is ionically crosslinked.
  • 8. The hydrogel of claim 7, wherein the alginate is ionically crosslinked by divalent or trivalent cations.
  • 9. The hydrogel of claim 8, wherein the divalent cation comprises Ca2+.
  • 10. The hydrogel of claim 1, wherein the alginate comprises a molecular weight of at least 100 kDa.
  • 11. The hydrogel of claim 1, wherein the hydrogel comprises a dextran diffusion coefficient of 2.5×10−7 to 1×10−6 cm2/s.
  • 12. The hydrogel of claim 1, wherein the hydrogel comprises multidirectional collagen fibrils.
  • 13. The hydrogel of claim 1, wherein the hydrogel comprises a collagen concentration of about 1.5 mg/mL.
  • 14. The hydrogel of claim 1, wherein the hydrogel comprises an alginate concentration of about 5 mg/mL.
  • 15. The hydrogel of claim 1, wherein the hydrogel comprises interconnected pores.
  • 16-20. (canceled)
  • 21. The hydrogel of claim 1, further comprising a mammalian cell.
  • 22-26. (canceled)
  • 27. A wound dressing material comprising the hydrogel of claim 1.
  • 28. The wound dressing material of claim 27, further comprising an anti-microbial or anti-inflammatory agent.
  • 29. A method of promoting tissue repair, tissue regeneration, or wound healing comprising administering the hydrogel of claim 1 to a subject in need thereof.
  • 30-42. (canceled)
RELATED APPLICATIONS

This application is a continuation of U.S. application Ser. No. 15/313,316, filed on Nov. 22, 2016; which is a 35 U.S.C. § 371 national stage filing of International Application No. PCT/US2015/035580, filed on Jun. 12, 2015; which claims priority to U.S. Provisional Application No. 62/011,517, filed on Jun. 12, 2014. The entire contents of each of the foregoing applications are hereby incorporated herein by reference.

Provisional Applications (1)
Number Date Country
62011517 Jun 2014 US
Continuations (1)
Number Date Country
Parent 15313316 Nov 2016 US
Child 17748330 US