This disclosure describes a layered structure for use in an apparatus for analyzing single living cells or groups of living cells that enables a seal for the majority of microwells in a microwell array in the presence of unwanted microscopic particles that contaminate the surface.
Microfluidic or microfabrication systems (also known as lab-on-a-chip') have been used for analyzing single cells or discrete groups of cells, and permitting analytes to be contained in hermetic microchambers or microwells that are isolated from external microenvironments. By segregating single cells or discrete groups of cells in different microwells, detection results specific to individual chambers and individual analytes may be obtained, even when multiple cell microwells are analyzed in a multiplexed fashion. An exploded cross-sectional illustration of a microwell 14 defined in a substrate of a microfluidic device and containing a single cell 18 is provided in
Undesired particles of microscopic size may contaminate surfaces of microwell arrays, and may be difficult to remove. The presence of particulate contamination may frustrate the ability to reliably seal microwell arrays without creating other difficulties.
Conventional glass-on-glass seals (such as disclosed by Molter, Timothy W., “A microwell array device capable of measuring single cell oxygen consumption rates,” Sens Actuators B Chem. 2009 Jan. 15; 135(2): 678-686) are not very accommodating to particulate contamination. Molter describes the use of support pillars to promote uniform pressure and stress distribution and proper sealing of a base and a lid; however, such method does not specifically address particle contamination resulting in differences in points of sealing contact from a reference plane of a lid.
The following U.S. patents describe sealing methods which are appropriate for large microwells for bulk cell measurements, but are incompatible with measurements of single cells or small numbers of living cells: U.S. Pat. Nos. 7,638,321; 7,851,201; 8,202,702; 8,658,349; and 8,697,431. U.S. Pat. Nos. 7,638,321 and 7,851,201 describe mating cover and seating surfaces with optional auxiliary seating components that are well known to those familiar with standard sealing technologies. Microscopic particles around the size of 1 μm are difficult to remove from polymers due to van der Waals forces, especially if the particles are embedded in the polymer during dicing operations. Particles of this size are also very difficult to inspect over a 1000-well (or larger) microwell array with 6 mm2 of surface area to be sealed. Even if particles are detected, it is very difficult to remove them mechanically. Use of a soft layer such as Shore A 70 durometer rubber for the main layer to which the sensor is attached, or such as the sensor matrix itself, is not compatible with live cell measurements in the context of microwell arrays. That is because the soft rubber layer would be extruded into the microwells, thereby elevating microwell pressure and thus affecting cell viability and/or cell response. Excessive distortion of an elastomer/sensor composite could also cause fracture of the sensor and/or impermeable layer.
One possible approach to promote microwell array sealing would be to select an interface layer or microwell lip coating material that is stiff enough not to extrude into the microwell (e.g., Parylene C) while providing a certain amount of compliance to microparticulate contamination. However, with such a material, the seal force required to accommodate particles in the 1 to 5 μm range is high. Parylene C can be deposited at a thickness of 1 to 5 μm, and possibly as high as 20 μm as an upper limit. At this thickness limit, the ability to accommodate particles of 5 μm size is limited. In addition, the modulus of elasticity of Parylene C (about 4 GPa) is too high to allow a reasonably low seal force. Moreover, such a technique cannot accommodate particles much bigger than about 2 to 10% of the thickness of the compliant coating layer without robbing other microwells in the microwell array of their share of the available sealing force. Because of the stiffness of a microwell-defining glass or fused silica substrate, any particle that is not completely consumed in the thickness of the compliant coating layer will result in seal failure for the majority or the entirety of the array. The larger the area of the particle contamination (e.g., including one or more particles) that is overcome by compliance, the lower the sealing force for the rest of the microwell array.
When single cells or discrete groups of cells are provided in microwells, it may be desirable to permit various conditions and/or metabolic parameters (e.g., oxygen, pH, etc.) to be sensed. Lu, H. et al (“New ratiometric optical oxygen and pH dual sensors with three emission colors for measuring photosynthetic activity in cyanobacteria,” Journal of Materials Chemistry, 21 (2011) 19293) describes a sensor which can be fabricated in a film format; however measurements were made in a cuvette with a transparent cap not compatible with high-throughput metabolic measurements.
The art continues to seek improved structures for sealing microwell arrays, preferably in conjunction with sensing capability and/or compatibility, to address limitations associated with conventional devices. Desirable structures would be low in cost, robust to handling during fabrication (e.g., during sensor deposition), and tolerant to microscopic particles, thus allowing local disruption of sealing in locations where particle contaminants are present without compromising the sealing performance of an entire microwell array and without requiring a large sealing force.
Aspects of this disclosure relate to a multi-layer sealing structure for use with a microwell array apparatus for analyzing single living cells or discrete groups of living cells.
In one aspect, the disclosure relates to a multi-layer sealing structure for sealing a microwell array defined in or on a substrate, wherein the multi-layer sealing structure includes at least one front compliant layer, a back compliant layer, and a flexural layer arranged between the at least one front compliant layer and the back compliant layer, and wherein the at least one front compliant layer is closer than the back compliant layer to microwells of the microwell array.
In certain embodiments, the at least one front compliant layer is substantially impervious to passage of gas (e.g., air) and/or evaporation of contents of a microwell. In certain embodiments, the at least one front compliant layer is optically reflective. In certain embodiments, the at least one front compliant layer comprises aluminum. In certain embodiments, the at least one front compliant layer comprises a plurality of front compliant layers. In certain embodiments, one front compliant layer of the plurality of front compliant layers embodies or includes a sensor layer. In certain embodiments, the sensor layer spans multiple microwells of a microwell array. In certain embodiments, a polymeric coating is arranged between the sensor layer and the at least one front compliant layer. In certain embodiments, the at least one front compliant layer comprises a thickness in a range of from 0.06 μm to 100 μm. In certain embodiments, the back compliant layer comprises an adhesive (e.g., an acrylic adhesive tape or a foam adhesive tape). In certain embodiments, the back compliant layer comprises foam rubber, solid rubber, or silicone rubber. In certain embodiments, the flexural layer comprises a polymeric material (e.g., the flexural layer comprises polyethylene terephthalate (PET)). In certain embodiments, the flexural layer comprises a metal (e.g., a flexural layer comprises aluminum). In certain embodiments, the flexural layer comprises a thickness in a range of from 25 μm to 100 μm. In certain embodiments, the flexural layer comprises a plate constant, D, in a range of from 8 kNm to 7000 kNm. In certain embodiments, the flexural layer comprises a modulus of elasticity of at least 1000 MPa.
In certain embodiments, a microfluidic device comprises a substrate defining a microwell array, and comprises a multi-layer sealing structure as described herein arranged to seal the microwell array. In certain embodiments, the multi-layer sealing structure may be removed from the substrate by peeling.
In another aspect, a method for arranging cellular material in a microwell array comprises: arranging cells or groups of cells in microwells of the microwell array, wherein each microwell of the microwell array includes a raised lip; and applying a multi-layer sealing structure as disclosed herein over the raised lip of each microwell to seal the cells or groups of cells in the microwells of the microwell array. In certain embodiments, the method further comprises removing at least a portion of the multi-layer sealing structure from at least some microwells of the microwell array by peeling the multi-layer sealing structure away from at least a portion of the microwell array.
In another aspect, any of the foregoing aspects, and/or various separate aspects and features as described herein, may be combined for additional advantage. Any of the various features and elements as disclosed herein may be combined with one or more other disclosed features and elements unless indicated to the contrary herein.
Those skilled in the art will appreciate the scope of the present disclosure and realize additional aspects thereof after reading the following detailed description of the preferred embodiments in association with the accompanying drawing figures.
Aspects of this disclosure relate to a multi-layer sealing structure for use with a microwell array for analyzing single living cells or discrete groups of living cells. A multi-layer sealing structure includes at least one front compliant layer, a back compliant layer; and a flexural layer arranged between the at least one front compliant layer and the back compliant layer. In certain embodiments, the at least one front compliant layer is optically reflective. In certain embodiments, the at least one front compliant layer comprises a plurality of front compliant layers. In certain embodiments, one front compliant layer of the plurality of front compliant layers comprises a sensor layer. Various multi-layer sealing structures disclosed herein are low in cost, robust to handling during fabrication, and tolerant to microscopic particles without compromising the sealing performance of an entire microwell array and without requiring a large sealing force.
In certain embodiments, a multi-layer sealing structure includes an internal flexural layer (e.g., flexible substrate) providing a degree of flexural rigidity, a compliant layer (e.g., a front compliant layer) that is relatively impervious and is preferably optically reflective, a relatively thin layer of compliant material (which may be a sensor layer) attached to this compliant layer, and another compliant layer attached to the back side of the flexural layer. In certain embodiments, the flexural layer may comprise a polymer, such as PET, and may be 25 to 100 μm thick. In certain embodiments, the at least one front compliant layer is preferably aluminum with at least 0.06 μm thickness for its oxygen barrier and optically reflective qualities, up to about 100 μm thickness. In certain embodiments, a relatively thick layer of aluminum may serve as a combination of any two or more of a flexural layer, an optically reflective layer, and a compliant layer. In certain embodiments, the optically reflective property of an optically reflective layer can approximately double the output of an optical sensor, or alternatively, allow an excitation dosage to be halved, in comparison to use of an absorptive or transparent layer. In certain embodiments, an aluminum layer may be deposited by standard evaporation techniques. In certain embodiments, an aluminum layer may be coated with a thin polymer layer for protecting an optically reflective aluminum surface reflectance prior to deposition of one or more sensor elements or layers. In certain embodiments, a mirror-like finish can be achieved, which is good for sealing and for minimizing optical aberrations that could affect data quality.
In certain embodiments, a back compliant layer is more compliant than the at least one front compliant layer. In certain embodiments, a back compliant layer comprises silicone rubber, e.g., 70 Shore A with an approximate thickness of 0.5 mm. In certain embodiments, a back compliant layer may comprise acrylic Pressure-Sensitive Adhesive (PSA), 50 to 125 μm thick, such as may be embodied or included in transfer tape or double-coated tape. In certain embodiments, a back compliant layer may comprise foam-based tape such as 3M 4016.
In certain embodiments, a multi-layer sealing structure may include a PET flexural layer, an evaporated aluminum layer, a protective coating for the evaporated aluminum layer, and a back layer of pressure sensitive adhesive. In certain embodiments, at least a portion of a multi-layer sealing structure may include 3M 850 film.
The substrate 20 includes an upper surface 21 and a lower surface 22 that opposes the upper surface 21. The microwell 24 includes oxygen sensing elements 23 integrated into the microwell 24 proximate to a microwell floor 25. In certain embodiments, additional and/or different sensor types may be used. A multi-layer sealing structure 30, including a front compliant layer 31, a flexural layer 32, and a back compliant layer 33, is illustrated as separated from (i.e., above) the substrate 20, prior to sealing of the microwell 24. When it is desired to seal the microwell 24, a lower surface 34 of the multi-layer sealing structure 30 (including a surface of the front compliant layer 31) may be arranged to contact an upper surface 27 of the lip 26.
In certain embodiments, a multi-layer sealing structure includes at least one front compliant layer, a back compliant layer; and a flexural layer arranged between the at least one front compliant layer and the back compliant layer. In certain embodiments, the at least one front compliant layer is optically reflective. In certain embodiments, the at least one front compliant layer comprises aluminum. In certain embodiments, the multi-layer sealing structure includes at least one front compliant layer and an impervious layer arranged between the at least one front compliant layer and microwells of the microwell array. In certain embodiments, the at least one front compliant layer comprises a plurality of front compliant layers. In certain embodiments, one front compliant layer of the plurality of front compliant layers embodies or includes a sensor layer. In certain embodiments, the sensor layer spans multiple microwells of a microwell array. In certain embodiments, a polymeric coating is arranged between the sensor layer and the at least one front compliant layer. In certain embodiments, the at least one front compliant layer comprises a thickness in a range of from 0.06 μm to 100 μm. In certain embodiments, the back compliant layer comprises an adhesive (e.g., an acrylic adhesive tape or a foam adhesive tape). In certain embodiments, the back compliant layer comprises foam rubber, solid rubber, or silicone rubber. In certain embodiments, the flexural layer comprises at least one polymeric material (e.g., the flexural layer comprises a PET). In certain embodiments, the flexural layer comprises a metal (e.g., the flexural layer comprises aluminum). In certain embodiments, the flexural layer comprises a thickness in a range of from 25 μm to 100 μm. In certain embodiments, the flexural layer comprises a plate constant, D, in a range of from 8 kNm to 7000 kNm. In certain embodiments, the flexural layer comprises a modulus of elasticity of at least 1000 MPa.
A conventional substrate including fused silica at 0.5 mm thickness has a plate constant over 100 times higher than the maximum specified.
A particle of 0.005 mm size, applied as a constrained displacement of 0.005 mm, results in a deflection profile that affects microwells (not shown) approximately 0.5 mm away from the particle, or with an area of about 0.2 mm2. For a 1023 microwell array with staggered pitch of 0.155×0.09 mm, well density is 37.6 microwells per/mm2. Thus, about 7 microwells would be affected. The reaction force of 0.073 Nt represents a tiny fraction of the total seal load of 321 Nt for a 1023 microwell array at 50 MPa seal force, and would represent a tiny fraction of a total seal load of even one tenth of this 50 MPa value.
In certain embodiments, a sensor as described (for example) in Lu, H. et al. (“New ratiometric optical oxygen and pH dual sensors with three emission colors for measuring photosynthetic activity in cyanobacteria,” Journal of Materials Chemistry, 21 (2011) 19293) may be attached by a casting technique to an aluminum layer of a multi-layer sealing structure. In certain embodiments, prior to deposition, an aluminum surface may be prepared for adequate sensor adhesion using known plasma treatment and/or silanization processes. In certain embodiments, an aluminum surface (without a protective polymer layer) may be treated with acetic acid to prepare the surface for sensor adhesion.
In certain embodiments, one or more sensors or sensor layers may be patterned on a front surface of a flexural layer (e.g., a PET layer having a rubber backing) without traversing through the multi-layer sealing structure. In certain embodiments, one or more sensors or sensor layers may be deposited in one or more microwells. In certain embodiments, one or more sensors may be dispersed in cell medium or may embody intracellular sensors. In certain embodiments, one or more sensors may be arranged to undergo a physical, chemical, or electrical change upon being exposed to selected conditions.
In certain embodiments, various layers of a multi-layer sealing structure may be selected and/or optimized based on the required maximum particle size to be accommodated. In certain embodiments, presence of particulate contamination may be modeled as a solid mechanic problem described as a plate on an elastic foundation with point loading.
In certain embodiments, a back compliant layer arranged on the rear of the flexural layer, may include or embody a pressure sensitive adhesive (PSA).
In certain embodiments, an aluminum foil may be laminated on a rubber substrate, with one or more sensors or sensor layers deposited on the aluminum.
In certain embodiments, a sensor structure may be manufactured in large sheet form, and may be die-cut or nibble-cut into pieces of size appropriate for live-cell measurements. In certain embodiments, such dimensions may be approximately 13 mm×13 mm for a 4000 microwell array.
In certain embodiments, a multi-layer sealing structure including one or more flexible sensors or sensor layers may be removed after performance of an assay or drawdown by peeling the multi-layer sealing structure, such as by starting at one end. Such peeling removal can improve cell retention in microwells by reducing hydrodynamic forces on the cell(s). This can enable repeated assay tests to be performed on the same cells under varying conditions such as drug treatment. Certain embodiments are directed to a method for arranging cellular material in a microwell array. The method includes arranging cells or groups of cells in microwells of the microwell array, wherein each microwell of the microwell array includes a raised lip; and applying the multi-layer sealing structure as disclosed herein over the raised lip of each microwell of a microwell array to seal the cells or groups of cells in the microwells of the microwell arrays. In certain embodiments, the method further comprises removing at least a portion of the multi-layer sealing structure from at least some microwells of the microwell array by peeling the multi-layer sealing structure away from at least a portion of the microwell array.
In certain embodiments, one or more sensors associated with a multi-layer sealing structure and/or a microwell array may be used to measure one or more analytes associated with live-cell metabolism, such as oxygen concentration and/or pH.
Upon reading the following description in light of the accompanying drawing figures, those skilled in the art will understand the concepts of the disclosure and will recognize applications of these concepts not particularly addressed herein. Those skilled in the art will recognize improvements and modifications to the preferred embodiments of the present disclosure. All such improvements and modifications are considered within the scope of the concepts disclosed herein and the claims that follow.
This application claims the benefit of U.S. Provisional Patent Application No. 62/220,395 filed Sep. 18, 2015; the disclosure of which is hereby incorporated by reference herein in its entirety.
This invention was made with government support under U01 CA164250 awarded by the National Institutes of Health. The government has certain rights in the invention.
Filing Document | Filing Date | Country | Kind |
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PCT/US2016/052193 | 9/16/2016 | WO | 00 |
Number | Date | Country | |
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62220395 | Sep 2015 | US |