The present invention refers to concentration gradient generators, such as a linear concentration gradient generator and a logarithmic concentration gradient generator.
Gradient concentration generators are used to generate a range of concentrations from two or more fluidic inlets. In the simplest form, two inlets are used to mix two solutions to a defined concentration, depending on the architecture of the generator. It can be envisioned that more solutions from multiple inlets can be mixed as well, to form a complex solution space. A Gradient concentration generator generates fluid flow exiting through a plurality of outlets, and the concentrations of the fluid flow exiting through different outlets may vary linearly, logarithmically, sigmoidally, expotentially, quadraticly, sinusoidally, squaredly, and cubedly, etc. It is for example also possible to use a flow rate gradient generator. Flow rate gradient generators are used to generate a range of flow rates.
It is an object of the present invention to provide new concentration gradient generators which are suitable for chemical or biological or medical or research applications.
In one example, an apparatus for linear gradient generation is provided. The apparatus comprises a first generation having at least two first generation channels. The apparatus further has a second generation having at least four second generation channels, each second generation channel having an inlet and an outlet, the inlet of each second generation channel being in communication with one of the at least two first generation channels, the outlet of each being in communication with the outlet of one of the other second generation channels, at a crossing point, wherein the inlet of the other second generation channel is in communication with another first generation channel. The apparatus further has a third generation having at least three third generation channels, each third generation channel having an inlet and an outlet. The apparatus comprises further at least one control channel being connected to one of the at least two first generation channels, the at least one control channel having an inlet and an outlet, wherein the inlet of the at least one control channel is connected with one of the at least two first generation channels, and the outlet of the at least one control channel is connected with one of the at least three third generation channels. A crossing point between two second generation channels is in communication with an inlet of one of the at least three third generation channels. The dimensions of the second generation channels that are in communication with a same first generation channel are chosen such that the fluid flow resistances of the second generation channels vary linearly. The sum of fluid flow resistances of any of the two second generation channels that are in communication with each other is of a predetermined value. The fluid flow resistance of the first generation channels is smaller than the fluid flow resistance of the second generation channels.
In one example, an apparatus for logarithmic gradient generation is provided. The apparatus comprises a first generation having a first generation channel, the first generation channel having an inlet, an outlet, and a connection node located in between the inlet and the outlet of the first generation channel. The apparatus further comprises a first connection channel having an inlet and an outlet, wherein the inlet of the first connection channel is connected to the first generation channel at the connection node of the first generation channel. The apparatus further comprises a second generation having a second generation channel, the second generation channel having an inlet, an outlet, and a first connection node located in between the inlet and the outlet of the second generation channel. The first connection node of the second generation channel is connected to the first connection channel at the outlet of the first connection channel.
In one example, a kit is provided, the kit comprising a first module comprising a linear gradient generator described herein. In one example, the kit further comprises a second module comprising a plurality of biological material cultivation chambers. In one example, the outlets of the third generation channels of the linear gradient generator are connected to inlets of the plurality of biological material cultivation chambers.
In one example, a kit is provided, the kit comprising a first module comprising a logarithmic gradient generator described herein. In one example, the kit further comprises a second module comprising a plurality of biological material cultivation chambers. In another example, the outlets of the generation channels of the logarithmic gradient generator are connected to inlets of the plurality of biological material cultivation chambers.
In one example, a kit is provided, the kit comprising a first module comprising a linear gradient generator described herein and/or a logarithmic gradient generator described herein. In one example, the kit further comprises a second module comprising a plurality of biological material cultivation chambers. In one example, the outlets of the third generation channels of the linear gradient generator are connected to inlets of the plurality of biological material cultivation chambers. In one example, the outlets of the generation channels of the logarithmic gradient generator are connected to inlets of the plurality of biological material cultivation chambers.
In one example, a method of subjecting a biological material located in a cultivation chamber for a test substance, is provided, the method comprises providing a linear gradient generator described herein. In another example, the method further comprises providing a plurality of cultivation chambers, each retaining a biological material. In a further example, the method further comprises introducing a cultivation medium through an inlet into one of the two first generation channels of the linear gradient generator, and introducing a test substance through an inlet into the other first generation channel of the linear gradient generator, whereby the cultivation medium or the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each third generation channel of the linear gradient generator. In one example, the method further comprises letting each of the mixtures or the cultivation medium or the test substance flow through at least one of the plurality of cultivation chamber which retains the biological material.
In one example, it is provided a method of subjecting a biological material located in a cultivation chamber to a test substance, the method comprising providing a logarithmic gradient generator described herein. In another example, the method further comprises providing a plurality of cultivation chambers, each retaining a biological material. In a further example, the method further comprises introducing a test substance through an inlet into the first generation channel of the logarithmic gradient generator and introducing a cultivation medium through an inlet into other generation channels of the logarithmic gradient generator, whereby the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each generation channel of the logarithmic gradient generator. In one example, the method further comprises letting each of the mixtures or the test substance flow through at least one of the plurality of cultivation chambers which retains the biological material.
In one example, a method of subjecting a biological material located in a cultivation chamber to a test substance is provided, the method comprising providing a linear gradient generator described herein and providing a logarithmic gradient generator described herein. In one example, the method further comprises providing a plurality of cultivation chambers, each retaining the biological material. In another example, the method further comprises introducing a cultivation medium through an inlet into one of the two first generation channels of the linear gradient generator, and introducing a test substance through an inlet into the other first generation channel of the linear gradient generator, whereby the cultivation medium or the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each third generation channel of the linear gradient generator. In one example, the method further comprises letting each of the mixtures or the cultivation medium or the test substance flow through at least one of the plurality of cultivation chambers which retains the biological material. In one example, the method further comprises introducing a test substance through an inlet into the first generation channel of the logarithmic gradient generator and introducing a cultivation medium through an inlet into other generation channels of the logarithmic gradient generator, whereby the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each generation channel of the logarithmic gradient generator. In one example, the method further comprises letting each of the mixtures or the test substance flow through at least one of the plurality of cultivation chambers which retains the biological material.
The invention will be better understood with reference to the detailed description when considered in conjunction with the non-limiting examples and the accompanying drawings, in which:
In the present invention, microfluidic technology to construct a linear concentration generator is used. The present invention provides, in one aspect, a linear concentration gradient generator including multiple generations. Only two inlets are required, one for a medium and one for a chemical solution, such as drugs/pharmaceuticals and toxins.
As used herein, for the linear concentration gradient generator, the term “generation” may refer to a part of the device of a linear concentration gradient generator trough which solution comprising at least one chemical substance at a certain concentration is flowing. For example,
In one example, the structure of the linear concentration generator is the one shown in
In one example, the linear concentration gradient generator may comprise two main channels (first generation channels), wherein the medium enters the device through one end of a main channel, and the solution comprising the chemical substance enters the device through one end of another main channel. For example,
In another example, each main channel is connected to a plurality of branch channels (second generation channels). For example, referring to
In one example, the sum of fluid flow resistances of every pair of branch channels that are connected to each other via crossing points is of the same value. For example, referring to
For example, the fluid flow resistance of branches which are connected with the same main channel can vary linearly. For example, referring to
The pattern of the flow concentration of a chemical substance can be influenced by the architecture of a concentration gradient generator. The microfluidic channels form the building block of the device (concentration gradient generator). By changing the resistances of these channels, flow distributions can be altered. The resistance of a channel section can be changed by altering the dimensions of the channel in width, height and/or length. The length is the easiest to calculate, as the resistance changes linear with the length. To calculate the resistance by changing the width or height of the channel, the Navier-Stokes equation for a particular shape of the channel has to be calculated. Different channel shapes (such as circular, rectangular) give different partial equations.
In principle, the Ohm's and Kirchhoff's law can be applied to a fluidic circuit as well as to an electric circuit, with the conversion shown in
Generally, Ohm's and Kirchoff's laws work for electric circuits and fluidic circuits in a similarly way. For electric circuits, according to Ohm's law: U=IR, wherein U is voltage, I is electric current, and R is resistance. Similarly, for the fluidic circuits, according to Ohm's law: P=uR, wherein P is pressure of fluidic flow, u is flow rate, and R is fluid flow resistance.
For electric circuits, according to Kirchoff's law: ΣI=0, meaning that at every electric circuit node/connection point/crossing point, the sum of all the electric current at the electric current node is zero. This holds true when we define that the electric current that flows into the node is positive, and the electric current that flows out of the node is negative.
Similarly, for fluidic circuits, according to Kirchoff's law: Σu=0, meaning that at every fluidic circuit node/connection point/crossing point, the sum of all the fluid flow at the fluidic circuit node is zero. This holds true when we define that the fluid flow that flows into the node is positive, and the fluid flow that flows out of the node is negative.
Navier-Stokes equation, which is well known in the art (Frank M. White, Fluid Mechanics, 1994, 3rd edition, McGRAW-HILL, INC, p. 205), may be used to derive the fluid flow rate in a channel: (flow in x-direction)
with u is the flow rate and μ is the viscosity and p is the pressure.
The partial-differential equation in Equ. (1) can be further expressed as:
Thus, the volumetric flow rate Q can be expressed as:
where R is the specific resistance. Here, the specific resistance may refer to resistance per unit length of the channel, and the volumetric flow rate may refer to volume of fluid which passes through a given surface per unit time. The total resistance over the channel is
R
t
=Rl
where l is the length of the channel. Thus,
−Δp=RtQ
From the above equations, it is possible to solve the flow distribution for the gradient generator.
As an illustration, for a rectangular channel with sides a and b, volumetric flow rate is:
Also in this example, other than the linear gradient generator disclosed in the art (G. M. Walker et al. Lab on a Chip, 2007, 7, 226-232), each main channel can further be connected with a control channel at one end of the control channel. For example, in
In other words, the linear concentration generator may comprise a first generation having at least two first generation channels (main channels). In one example, the linear concentration generator may comprise a second generation having at least four second generation channels (branch channels), each second generation channel having an inlet and an outlet, the inlet of each second generation channel being in communication with one of the at least two first generation channels (main channels), the outlet of each being in communication with the outlet of one of the other second generation channels, at a crossing point, wherein the inlet of the other second generation channel is in communication with another first generation channel. In one example, the linear concentration generator may comprise a third generation having at least three third generation channels (sub-channel/sub-branch channel), each third generation channel having an inlet and an outlet. In one example, the linear concentration generator may comprise at least a control channel being connected to one of the at least two first generation channels, the at least a control channel having an inlet and an outlet, wherein the inlet of the at least a control channel is connected with one of the at least two first generation channels, and the outlet of the at least a control channel is connected with one of the at least three third generation channels. In one example, a crossing point between two second generation channels is in communication with an inlet of one of the at least three third generation channels. In another example, the dimensions of the second generation channels that are in communication with a same first generation channel are chosen such that the fluid flow resistances of the second generation channels vary linearly. In one example, the sum of the fluid flow resistance of any two second generation channels that are in communication with each other is a predetermined value. In one example, fluid flow resistances of the first generation channels are lower than the fluid flow resistances of the second generation channels.
In one example, each of the at least three third generation channels is of serpentine shape including multiple turns. For example, referring to
In a further example, the fluid flow resistance of second generation channels can be varied differently by changing the length or height or width of the channels. For example, the fluid flow resistance of second generation channels, such as second generation channels 205-216, can be varied differently by changing the length or height or width of the channels. In a particular example, the relative resistance of second generation channels 205, 207, 209, 211, 213, and 215 are 6, 5, 4, 3, 2, 1, respectively, and the resistance of the second generation channels 205, 207, 209, 211, 213, and 215 are varied by changing the length of the channels. As can be seen, for example, channel 205, which has a higher fluid flow resistance of 6, is much longer compared to channel 215, which has a lower relative fluid flow resistance of 1.
The mechanism of the linear concentration gradient generator is interpreted in more detail as follows. According to the Ohm's law: P=uR, wherein u is the flow rate, and R is resistance. In this regard, the Ohm's law applies to a fluid flow similarly as to an electrical circuit. For example,
In
U
3
=U
1
−I
1
R
1
=U
2
−I
2
R
2;
I
3
=I
1
+I
2
Should U1=U2, then I1R1=I2R2
Similarly, for the fluid flow system as shown in
Thus, the linear gradient generator 200 as shown in
The flow rate may define the amount of liquid which passes through a given cross section of the channel, which plays a role in the correct mixing ratio.
However, it is also possible to provide a linear gradient generator working with two different flow rates at the two inlets 203 and 204. In this case, the resistance of the channels needs to be adjusted to still obtain a linear gradient at the outlets of the linear gradient generator.
The section area of a channel, which is the product of width and height of the channel, can influence the resistance of the channel. A larger section area can lead to a smaller resistance of the channel, wherein a smaller resistance can contribute to an increase of the flow rate. On the other hand, a larger section area, and hence a larger volume of the channel can contribute to a decrease of the flow rate. Thus, whether an increase of the section area can lead to an increase or a decrease of the flow rate depends on which factor (resistance or volume) is dominant, which means that if the change of fluid flow resistance is dominant when increasing the section area, then the flow rate can be reduced, and if the change of volume is dominant when increasing the section area, then the flow rate can be increased.
Assuming a given constant flow rate, when enlarging the section area of the channel the flow rate at that point, as well as the pressure, can decrease. Reducing the section area of the channel can lead to an increase of flow rate and pressure at that point.
The length of a channel is a parameter which can be used to change the fluid flow resistance of the channel, because the fluid flow of the channel changes linearly with the length of the channel. Given a same section area of the channel, the longer the channel the larger the fluid flow resistance. It is possible to vary the resistance of the channel in any way, by lengthening, or changing the width and depth. However, it is much easier to change the resistance by changing the length, as the Navier-Stokes equation does not need to be solved for a certain channel cross section shape. Accordingly, with reference to
A longer length (not considering the section area) of the channel would lead to a higher resistance in the channel, and hence leads to a lower flow rate of the liquid in the channel. The difference of the flow rates between two mixing branches would lead to different concentrations in the mixed channel. This is because at the branching points (nodes) the branch guiding the liquid stream with the higher flow rate contributes a greater amount of liquid to the mixture created at the node than the branch guiding the liquid stream with the lower flow rate. Thus, different amounts of liquid are mixed with each other which results in dilution of the concentration of any substance comprised in the branch guiding the liquid stream with the lower flow rate. In operation, for example, referring to
The linear concentric gradient generator shown in
For n outlets, fluid flow exiting from outlet i comprise a percentage of solution of
For example, in
Please note that the resistance in the main channels 201 and 202 of the linear gradient generator shown in
In one example, the width of the main channel can be at least 3 times that of the side channels, assuming they all have the same height. The reason is to obtain the so called “garden hose effect”, meaning all side channels will have the same flow rate. Lowering the resistance of the main channel can lead to a parabolic distribution of the flow rate in the side channels.
In one example, to obtain a 0% and 100% medium (or solution consisting of chemical substance) of fluid flow exiting through the outlet, the control channels may be provided and may not be paired. In one example, control channels 217 and 218 are connected directly to the medium and solution inlets 203 and 204, respectively (
The model in
In more detail, the channel numbers 1-8 in the horizontal axis in
In one example, the typical width for a side channel, such as the second generation channels and third generation channels, may be within the range of 25-100 μm, while the main channels such as 201 and 202 may be within the range of 200-400 μm. Generally speaking, a wider main channel can result in a lower resistance. In one example, in connection with
Flow rates may be between 30 μl/h to 220 μl/h, but higher flow rates are also possible (20 μl/min, namely 1200 μl/h). In case of higher flow rates, the length of the mixing section (the meanders (third generation channels such as 219-226) before the outlets in
In one example, the fluid flow in the channels is a laminar flow. In general, laminar flow, sometimes known as streamline flow, occurs when a fluid flows in parallel layers, with no disruption (or turbulence) between the layers.
In one example, a mixing meander (third generation channel) is incorporated into the design to facilitate more rapid mixing. In another example, a mixing meaning may have waveform shapes such as sinusoidal wave, triangle wave and pulse wave etc. The mixing meander may have a plurality of turns. Each turn may have an angle of 90 degree (
In one example, the working of the logarithmic concentration gradient generator is based on the following principle. The first channel, which is the solution inlet, passes 10% of its contents to the next channel in which the 10% solution is mixed with 90% medium. 10% of this mixed, diluted solution is then passed onto the channel. For n outlets, the fluid flow exiting through outlet i comprises a percentage of solution of outi=10−i+1.
In one example, an apparatus for gradient generation is provided. The apparatus comprises a first generation having a first generation channel, the first generation channel having an inlet, an outlet, and a connection node located in between the inlet and the outlet of the first generation channel. For example, referring to
In one example, for the logarithmic concentration gradient generator, the term “generation” may refer to the level that the concentration of inlet solution is diluted. For example, the first generation channel lying between the nodes 1 and 3 as indicated in
In one example, the second generation channel may further comprise a second connection node located between the first connection node and the outlet of the second generation channel, the second connection node being connected to a second connection channel at an inlet of the second connection channel, wherein the second connection channel has an inlet and an outlet. For example, referring to
In one example, the apparatus for gradient generation may comprise a number of n generations, wherein n is any integer value that is larger than 1, and wherein each ith (i=1 . . . n) generation has a generation channel, and a connection channel, wherein each generation channel has an inlet and an outlet, and wherein each connection channel has an inlet and an outlet. For example, referring to
In one example, for any generation channel that is not the first generation channel, each ith generation channel may have a first connection node located in between the inlet and the outlet of the ith generation channel, and a second connection node located in between the first connection node and the outlet of the ith generation channel. Referring to
In one example, the first connection node of the ith generation channel is connected to a (i−1)th connection channel at the outlet of the (i−1)th connection channel, and the second connection node of the ith generation channel is connected to an ith connection channel at the inlet of the ith connection channel. For example, referring to
In one example, fluid flow resistance of a channel is varied differently by changing the length or height or width of the channels.
In one example, the gradient generation channel is a logarithmic gradient generation apparatus.
In one example, the solution consisting of at least one chemical substance enters the first generation channel, and the medium enters other generation channels. In one example, the relative inlet flow rate at the first generation channel may be 10, and the relative inlet flow rate at the other generation channels may be 9. For example, referring to
In one example, referring to
In another example, referring to
The values of the resistances are calculated from the fluidic Ohm's and Kirchoff's law, by assuming a few initial values. A detailed description illustrating how the calculation is carried out is provided further below. If one of the resistances is changed, the whole flow distribution can be altered. For example, changing R2 to 3 would lead to different flow rates and distributions of the fluid flow exiting through different outlets. As used herein and after, Ri to j represents the fluid flow resistance of the channel lying between the nodes i and j as indicated in
In one example, the apparatus for logarithmic gradient generation satisfies RCn=9×RGn3, wherein RCn is the fluid flow resistance of the nth connection channel, and RGn3 is the fluid flow resistance between the second connection node and the outlet of the nth generation channel. For example, referring to
In a further example, the apparatus for gradient generation satisfies RGi3=(RCi+10×RG(i+1)2+9×RG(i+1)3)/9, (i=1 . . . n−1), wherein RGi3 is the fluid flow resistance between the second connection node and the outlet of ith generation channel, RCi is the fluid flow resistance of ith connection channel, RG(i+1)2 is the fluid flow resistance between the first connection node and the second connection node of the (i+1)th generation channel, and RG(i+1)3 is the fluid flow resistance between the second connection node and the outlet of the (i+1)th generation channel. Referring to
The calculation of the resistance values for the channels of the logarithmic concentration gradient generator are illustrated in more detail further below.
For a logarithmic gradient generator with a number of n gradient generations, in order to achieve that at the second connection node of the nth generation channel, 10 percent of the fluid flow enters the nth connection channel, the following formula should be satisfied (Ohm's law):
u
Cn
×R
Cn
=u
Gn3
×R
Gn3
wherein RCn is the fluid flow resistance of the nth connection channel, and RGn3 is the fluid flow resistance between the second connection node and the outlet of the nth generation channel. As 10 percent of the fluid flow enters the nth connection channel, we have
U
Cn×9=uGn3
From the above two equations, we have:
R
Cn=9×RGn3
As an illustration, referring to
Further, for a ith (i=1 . . . n−1) gradient generation channel, according to the Ohm's law, the following formula may be satisfied:
R
Gi3
×u
Gi3
=R
Ci
×u
Ci
+R
G(i+1)2
×u
G(i+1)2+RG(i+1)3×uG(i+1)3
Wherein RGi3 is the fluid flow resistance between the second connection node and the outlet of ith generation channel, RCi is the fluid flow resistance of ith connection channel, RG(i+1)/2 is the fluid flow resistance between the first connection node and the second connection node of the (i+1)th generation channel, and RG(i+1)3 is the fluid flow resistance between the second connection node and the outlet of the (i+1)th generation channel, uGi3 is the fluid flow rate in the channel between the second connection node and the outlet of ith generation channel, uCi is the fluid flow rate in the ith connection channel, uG(i+1)2 is the fluid flow rate between the first connection node and the second connection node of the (i+1)th generation channel, and uG(i+1)3 is the fluid flow rate between the second connection node and the outlet of the (i+1)th generation ration channel.
For the logarithmic gradient generator, according to the Kirchhoff's law, the relations of the fluid flow rate in different channels satisfy:
u
Gi3=9×uCi=uG(i+1)3; and uG(i+1)2=10×uCi
Thus, from the above three equations, we have:
R
Gi3=(RCi+10×RG(i+1)2+9×RG(i+1)3)/9
As an illustration, referring to
R
26 to 27(RGi3)=(R26 to 29+10×R29 to 30+9×R30 to 31)/9=12
It should be noted that the relative resistance R29 to 30 (RG(i+1)2) and R26 to 29 (RCi) in this example can be also assumed to have other values. For example, if we assume R29 to 30(RG(i+1)2) to be 3 and R26 to 29 (RCi) to be 6, we will have the relative resistance
R
26 to 27(RGi3)=(R26 to 29+10×R29 to 30+9×R30 to 31)/9=5
As can be seen from the example given in the previous paragraphs, the resistances are calculated from Ohm's and Kirchhoff's laws. A few values may be assumed (such as R30 to 31 (RG(i+1)3), R26 to 29 (RCi) and R29 to 30 (RG(i+1)2)) as to calculate all the other resistances. The thus obtained resistance values are only relative, not absolute. That means that, referring to
Previous computer experiments show an excellent logarithmic distribution of the solution, compared to medium (
In one example, a gradient generator can be connected to a plurality of biological material cultivation chambers.
Different kinds of biological material cultivation chambers are known in the art, such as the one described in WO 2007/008609.
In general, a biological material cultivation chamber is dimensioned to retain a biological material in the cultivation chamber. In one example, such a cultivation chamber has a circumferential wall, wherein the circumferential wall has at least one inlet and at least one outlet in order to allow flow of a cultivation medium through the cultivation chamber. The biological material which is retained in the cultivation chamber can include, but is not limited to, a tumor spheroid, an organism in an embryonic stage, eukaryotic cells, or prokaryotic cells. In one example, each outlet of a gradient generator provides a liquid stream having, e.g., a substance A at a certain concentration. The connection between an outlet of the gradient generator and the inlet of a cultivation chamber can be a channel having the same structure and dimensions as the channels of the concentration gradient generator. It is also possible that the width of a channel which is fluidly connecting an outlet of the concentration gradient generator and an inlet of a cultivation chamber has a different width. Increasing the width of the connecting channel relative to the width of the channel of the concentration gradient generator can reduce the speed of the liquid inside the channel. Decreasing the width of the connecting channel relative to the width of the channel of the concentration gradient generator can increase the speed of the liquid inside the channel.
In one example, an outlet of the concentration gradient generator splits up into several outlet channels. In one example, the several outlet channels are all feeding the same liquid stream into a same or a different cultivation chamber, i.e. one outlet of a concentration gradient generator is fluidly connected with more than one cultivation chamber, namely with at least two, three, four, five, six, seven, eight or even more (PCT/SG2008/000318).
For example,
The cultivation chamber can in general be of any shape as long as it is dimensioned to retain a biological material in the cultivation chamber. The cultivation chamber should be dimensioned in order to retain the biological material in a position that allows for example optical analysis of the biological material retained in the cultivation chamber. The shape (seen in cross section) of the cultivation chamber can be for example polygonal or a trapezoid. In another example, the shape (seen in cross section) of the cultivation chamber can be a semi-circular, or circular cross section. Cultivation chambers of other polygonal cross-sections, such as a triangular, square, rectangular, pentagonal, hexagonal, octagonal, oblong, ellipsoidal etc. are also possible.
The substrate for manufacturing a microfluidic continuous flow device including cultivation chambers and a concentration gradient generator may be molded using any type of material which can be made into a microfluidic continuous flow device of the invention. In one example the material is chosen to allow observation of cells. Such materials include polymers, glass, silicone or certain types of metal.
In one embodiment, the material for forming the substrate is a biocompatible material. A biocompatible material includes, but is not limited to, glass, silicon and a polymerisable material. The polymerisable material includes, but is not limited to, monomers or oligomeric building blocks (i.e. every suitable precursor molecule) of polycarbonate, polyacrylic, polyoxymethylene, polyamide, polybutylenterephthalate, polyphenylenether, polydimethylsiloxane (PDMS), mylar, polyurethane, polyvinylidene fluoride (PVDF), flourosilicone or combinations and mixtures thereof. In some examples, the biocompatible material comprises PVDF and/or PDMS. Advantages of PVDF and PDMS are their cheap price and superior biocompatibility. Furthermore, as they are transparent, they conveniently allow direct morphological observation of the biological material under an observation device, e.g. a microscope, to be carried out. In one example the microfluidic continuous flow device is made of poly(-dimethylsiloxane) (PDMS).
Furthermore, the microfluidic continuous flow device including cultivation chambers and a concentration gradient generator can comprise a cover and/or bottom layer forming the top and/or bottom of the cultivation chamber. The cover layer can have any suitable optical transparency. A fully opaque cover or one which is transparent, or one which is made of a translucent material (thereby permitting the transmission of a certain amount of light) may be used. In a further example, the top and/or bottom layer may comprise a biocompatible material that is transparent or at least substantially translucent in order that the device is compatible for use with optical microscopes which can provide a backlight that can be directed through a cultivation chamber of the microfluidic continuous flow device in order to provide a bright view of the processes occurring in the cultivation chamber during its use.
Another aspect of the invention concerns the fabrication of the above described microfluidic continuous flow devices. The template for creating the device of the invention can be fabricated according to any technique known in the art, such as photolithography, etching, electron-beam lithography, laser ablation, hot embossing, etc. depending on the material used. For example, when fabricating devices using Si templates in microscale and nanoscale, it is possible to use laser ablation, etching or hot embossing, and electron-beam lithography respectively. Templates can also be manufactured using epoxy based negative resists with high functionality, high optical transparency and sensitivity to near UV radiation, such as photoresists of the SU-8 series from MicroChem Corp. (Newton, Mass., US). The above techniques are known in the area of microelectronics and microfabrication. After creating the template the microfluidic continuous flow device is then created by replica molding of, for example, poly(-dimethylsiloxane) (PDMS) on the template. In one example, the silicon templates can for example be fabricated by standard deep reactive ion etching (DRIE) process.
The biological material which is retained in a cultivation chamber can include, but is not limited to tumor spheroids, an organism in an embryonic stage, prokaryotic cells, eukaryotic cells, cell aggregates from the aforementioned group of cells and mixtures thereof.
The organism in an embryonic stage includes, but is not limited to amphibian eggs, fish eggs, insect eggs and mammalian eggs. Examples for fish eggs include, but are not limited to an egg of a zebrafish (Danio rerio), an egg of a medaka (Oryzias latipes), an egg of a giant danio (Devario aequipinnatus), and an egg of a fish from the family Tetraodontidae (puffer fish). An example for an amphibian egg can include, but is not limited to toad eggs, frog eggs, an egg of Caenorhabditis elegans (C. elegans) and salamander eggs. Examples for an insect egg include, but are not limited to an egg from a fruit fly (Drosphila melanogaster). In some examples the organism can be a mammalian embryo except embryos of humans. It is also possible to use Caenorhabditis elegans (C. elegans), prokaryotic or eukaryotic cells, for cultivation in the cultivation chamber of the microfluidic continuous flow device of the present invention. C. elegans is about 1 mm long and is used as model organism for studying cell differentiation.
The group of prokaryotic cells includes, but is not limited to archaea, green bacteria, gram-positive bacteria, deinococcus, spirochaeta, planctomycetes, Chlamydia, purple bacteria including the group of gram-negative bacteria, cyanobacteria and flavobacteria. (Systematic classification is based on the 16S-rRNA comparison as referred to by Hans G. Schleger, 1992, Allgemeine Mikrobiologie, 7th edition, page 93). Examples for eukaryotic cells include, but are not limited to mammalian cells, ciliate cells, fungi, plants, flagellates and microsporidias.
Examples for mammalian cell lines or primary cells can include, but are not limited to bone marrow stroma cells, calvarial osteoblasts, Langerhans cells, hepatocytes, chondrocytes, sinusoidal endothelial cells, cardiomyocytes, glioma cells (from brain), dermal fibroblasts, keratinocytes, oligodendrocytes, hematopoetic stem cells, T-lymphocytes, macrophages and neutrophils. Primary hepatocytes or primary kidney cells can also be used. Stem cells, cancerous cells as well as non cancerous cells can also be used as biological material. Some examples of cell lines which can be used are primary adipocytes, A549 lung cells (carcinomic human alveolar basal epithelial cells), proximal tubular human kidney HK-2 cells and the human hepatocellular carcinoma cell line HepG2/C3A (liver). Besides cells of human origin, cells of cat, cow, rat, mouse, sheep, monkey, pig, horse, dog and amphibian origin and insect cells can also be used. Of particular interest are cells or cell lines which can be used for drug tests.
This platform allows for the creation of specific microenvironments in the cultivation chambers in which, for example, a biological material resides. A biological material can be treated with small molecules and drugs for example for high-throughput analysis and for the identification and validation of drugs. High-throughput methodologies include, but are not limited to, phenotype-based visualization, transcript studies using low-density DNA microarrays or proteomic analysis. In case of fish embryos, the embryonic development, ex utero, of for example, medaka and zebrafish is 9 to 11 and 2 days, respectively, making those organisms very suitable for the cultivation in the cultivation chamber of the microfluidic continuous flow device described herein. Due to their small egg size (about 700 μm to about 1000 μm) they are also particularly suitable for analysis in a microfluidic continuous flow device described herein. To follow the development of these fishes it is possible to use transgenic animals. For example, by using a reporter protein (e.g., green fluorescence protein GFP) it is possible to follow the development effect of certain drugs on these organisms in the cultivation chamber.
Tumor spheroids are aggregates made up of tumor cells, or cell lines, which can also be located into a cultivation chamber. The tumor spheroids can be selected from every kind of cancer tumor. Such a cancer can include, but is not limited to a basal cell carcinoma, bladder cancer, bone cancer, brain cancer, CNS cancer, breast cancer, cervical cancer, colon cancer, rectum cancer, connective tissue. cancer, esophageal cancer, eye cancer, kidney cancer, larynx cancer, liver cancer, lung cancer, Hodgkin's lymphom, non-Hodgkin's lymphom, melanoma, myeloma, leukemia, oral cavity cancer, ovarian cancer, pancreatic cancer, prostate cancer, rhabdomyosarcoma, skin cancer, stomach cancer, testicular cancer, neoplasia or uterine cancer.
The chemical substance can be any molecule which has or is suspected to have an effect on the biological material retained in the cultivation chamber. Such a chemical substance can include, but is not limited to a pharmaceutical composition, a compound which is or which is suspected to be necessary for the cultivation of the biological material and which is initially not comprised in the cultivation medium; a compound which is or which is suspected to be necessary for the metabolism of the biological material and which is initially not comprised in the cultivation medium; a compound or composition which is or which is suspected to be teratogenic, cancerogenic, mutagenic, psychogenic or toxic, or mixtures thereof. Such a chemical substance can also be a gaseous substance.
In one example, the outlets of a concentration gradient generator are fluidly connected to the inlets of a plurality of biological material cultivation chambers. Referring to
In one example, connection of a logarithmic gradient generator as shown in
In one example, referring to
In one example, the kit further comprises a second module 1602 comprising a plurality of biological material cultivation chambers. The outlets of the third generation channels of the linear gradient generator in the first module 1601 may be connected to inlets of the plurality of biological material cultivation chambers in the second module.
In another example, each outlet for a concentration of a gradient generator in the first module 1601 may split up into a plurality of outputs. In one example, each of the plurality of outputs for a concentration may be connected with an inlet of a biological material cultivation chamber.
In one example, referring to
In one example, each channel provided by the third module 1603 has at least one inlet and at least one outlet. In one example, the outlet or outlets for a concentration of each third generation channel of the linear gradient generator in the first module 1601 is fluidly connected to at least one inlet of a channel of the third module. The at least one outlet of the channel of the third module is connected to an inlet of at least one biological material cultivation chamber.
For example,
In another example, a channel in the third module 1603 has at least one inlet and at least one outlet. For example, referring to
It is noted however that the number of both inlets and outlets of a channel is not limited to the example shown in
In another example, shown in
In one example, the first module 1601 in
In another example, the outlets of the generation channels of the logarithmic gradient generator in the first module 1601 are connected to inlets of the plurality of biological material cultivation chambers in the second module 1602 as shown in
It is also possible that each outlet of a concentration of a generation channel of the logarithmic gradient generator splits up into a plurality of outlets. The outlets for a concentration of the gradient generator may be directly connected to inlets of at least one biological material cultivation chambers.
In one example, referring to
In another example, the outlet or outlets of each generation channel of the logarithmic gradient generator in the first module 1601 can be connected to an inlet or inlets of a channel of the third module 1603.
It is also possible that the first module shown in
In one example, the first module 1601 may comprise both the linear gradient generator, for example as shown in
The present invention is further directed to a method of subjecting a biological material located in a cultivation chamber to a test substance. The method can comprise: providing a linear gradient generator such as the one described herein and a plurality of cultivation chambers which can retain a biological material. The method further comprises introducing a cultivation medium through an inlet into one of the two first generation channels of the linear gradient generator, and introducing a test substance through an inlet into the other first generation channel of the linear gradient generator, whereby the cultivation medium or the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet of each third generation channel of the linear gradient generator. Each of the mixtures or the cultivation medium or the test substance flows through at least one of the plurality of cultivation chambers.
In another aspect, the present invention refers to a method of subjecting a biological material located in a cultivation chamber to a test substance. The method comprises: providing a logarithmic gradient generator as described herein and a plurality of cultivation chambers which can each retain a biological material. The method further comprises introducing a test substance through an inlet into the first generation channel of the logarithmic gradient generator and introducing a cultivation medium through an inlet into other generation channels of the logarithmic gradient generator, whereby the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each generation channel of the logarithmic gradient generator. Each of the mixtures or the test substance flows through at least one of the plurality of cultivation chambers.
In another aspect, the present invention refers to a method of subjecting a biological material located in a cultivation chamber to a test substance, the method comprising: providing a linear gradient generator as described herein, a logarithmic gradient generator as described herein, and a plurality of cultivation chambers, each retaining the biological material. The method further comprises introducing a cultivation medium through an inlet into one of the two first generation channels of the linear gradient generator, and introducing a test substance through an inlet into the other first generation channel of the linear gradient generator, whereby the cultivation medium or the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each third generation channel of the linear gradient generator. Each of the mixtures or the cultivation medium or the test substance flows through at least one of the plurality of cultivation chambers. The method further comprises introducing a test substance through an inlet into the first generation channel of the logarithmic gradient generator and introducing a cultivation medium through an inlet into other generation channels of the logarithmic gradient generator, whereby the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlet or outlets of each generation channel of the logarithmic gradient generator. Each of the mixtures or the test substance flows through at least one of the plurality of cultivation chambers which retains the biological material.
The method further comprises providing one or more gradient generators, introducing a cultivation medium and the test substance through inlets into the one or more gradient generators, whereby the cultivation medium or the test substance or a mixture of the cultivation medium and the test substance is obtained at the outlets of each outlet of the one or more gradient generators. Each of the mixtures or the cultivation medium or the test substance flow through at least one of the plurality of cultivation chambers which retains the biological material.
The above described microfluidic continuous flow devices of the linear gradient generator and the logarithmic gradient generator as well as the kit comprising gradient generator(s) and a biological material cultivation chamber can be used for any biological assays such as, but not limited to, high throughput drug screening assays with, wastewater and drinking water analysis assays, assays testing of the biological effect of at least one chemical substance. To name only a few examples, this at least one chemical substance may be a pharmaceutical compound or composition, a compound which is or which is suspected to be necessary for the cultivation of the biological material and which is initially not comprised in the cultivation medium; a compound which is or which is suspected to be necessary for the metabolism of the biological material and which is initially not comprised in the cultivation medium; a compound or composition which is or which is suspected to be teratogenic, cancerogenic, mutagenic, psychogenic, toxic; or mixtures thereof.
While the invention has been particularly shown and described with reference to specific embodiments, it should be understood by those skilled in the art that various changes in form and detail may be made therein without departing from the spirit and scope of the invention as defined by the appended claims. The scope of the invention is thus indicated by the appended claims and all changes which come within the meaning and range of equivalency of the claims are therefore intended to be embraced.
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/SG2010/000094 | 3/16/2010 | WO | 00 | 12/27/2011 |
Number | Date | Country | |
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61160791 | Mar 2009 | US |