Claims
- 1. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO: 91 having an amino acid change selected from the group consisting of:
(a) a Phe changed to a Group 2 amino acid residue at position 31; (b) a Gln changed to a Group 5 amino acid residue at position 41; (c) a Thr changed to a Group 2 amino acid residue at position 52; (d) a Thr changed to a Group 3 amino acid residue at position 52; (e) a Cys changed to a Group 5 amino acid residue at position 73; (f) a Pro changed to a Group 4 amino acid residue at position 101; (g) a Pro changed to a Group 3 amino acid residue at position 101; (h) a Val changed to a Group 2 amino acid residue other than Val at position 111; (i) a Ser changed to a Group 2 amino acid residue at position 133; (j) a Glu changed to a Group 2 amino acid residue at position 141; (k) a Glu changed to a Group 5 amino acid residue at position 141; (l) a Cys changed to a Group 6 amino acid residue at position 153; (m) a Cys changed to a Group 5 amino acid residue at position 153; (n) a Thr changed to a Group 1 amino acid residue at position 281; (o) a Asn changed to a Group 2 amino acid residue at position 367; (p) a Asn changed to a Group 6 amino acid residue at position 367; (q) a Pro changed to a Group 4 amino acid residue at position 389; and (r) a Pro changed to a Group 2 amino acid residue at position 389.
- 2. The polypeptide of claim 1 wherein the polypeptide when expressed in an A. terreus cell harboring a lovF gene increases expression of the lovF gene relative to an otherwise identical cell not expressing the polypeptide.
- 3. The polypeptide of claim 1 wherein the polypeptide when expressed in a S. cerevisiae harboring a gene under the control of the A. terreus lovF expression control region increases expression of the gene relative to an otherwise identical cell not expressing the polypeptide.
- 4. The isolated polyeptide of claim 1 having fewer than 15 amino acid changes.
- 5. The isolated polypeptide of claim 1 having fewer than 11 amino acid changes.
- 6. The isolated polypeptide of claim 1 having fewer than 10 amino acid changes.
- 7. The isolated polypeptide of claim 1 having fewer than 8 amino acid changes.
- 8. The isolated polypeptide of claim 1 having fewer than 5 amino acid changes.
- 9. The isolated polypeptide of claim 1 having fewer than 3 amino acid changes.
- 10. The isolated polypeptide of claim 1 having 1 amino acid change.
- 11. The isolated polypeptide of claim 1 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 95 immediately amino terminal to the amino acid of SEQ ID NO: 91.
- 12. The isolated polypeptide of claim 1 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 96 immediately amino terminal to the amino acid of SEQ ID NO: 91.
- 13. The isolated polypeptide of claim 1 having an amino acid change selected from the group consisting of: F31L, Q41K, Q41R, T52I, T52N, C73R, P101S, P101Q, V111I, S133L, E141V, E141K, C153Y, C153R, T281A, N367I, N367Y, P389S, and P389L.
- 14. The isolated polypeptide of claim 1 comprising an amino acid sequence selected from the group consisting of SEQ ID NO: 41, SEQ ID NO: 42, SEQ ID NO: 43, SEQ ID NO: 44, SEQ ID NO: 45, SEQ ID NO: 46, SEQ ID NO: 47, SEQ ID NO: 48, SEQ ID NO: 49, SEQ ID NO: 50, SEQ ID NO: 51, SEQ ID NO: 52, SEQ ID NO: 53, SEQ ID NO: 54, SEQ ID NO: 55, SEQ ID NO: 56, SEQ ID NO: 57, SEQ ID NO: 58, SEQ ID NO: 59, SEQ ID NO: 60, SEQ ID NO: 61, SEQ ID NO: 62, SEQ ID NO: 63, SEQ ID NO: 64, SEQ ID NO: 65, SEQ ID NO: 91, SEQ ID NO: 93, and SEQ ID NO: 94.
- 15. An isolated nucleic acid molecule comprising a nucleotide sequence encoding a polypeptide comprising the amino acid sequence of SEQ ID NO: 91 having at least one amino acid change selected from the group consisting of:
(a) a Phe changed to a Group 2 amino acid residue at position 31; (b) a Gln changed to a Group 5 amino acid residue at position 41; (c) a Thr changed to a Group 2 amino acid residue at position 52; (d) a Thr changed to a Group 3 amino acid residue at position 52; (e) a Cys changed to a Group 5 amino acid residue at position 73; (f) a Pro changed to a Group 4 amino acid residue at position 101; (g) a Pro changed to a Group 3 amino acid residue at position 101; (h) a Val changed to a Group 2 amino acid residue other than Val at position 111; (i) a Ser changed to a Group 2 amino acid residue at position 133; (j) a Glu changed to a Group 2 amino acid residue at position 141; (k) a Glu changed to a Group 5 amino acid residue at position 141; (l) a Cys changed to a Group 6 amino acid residue at position 153; (m) a Cys changed to a Group 5 amino acid residue at position 153; (n) a Thr changed to a Group 1 amino acid residue at position 281; (o) a Asn changed to a Group 2 amino acid residue at position 367; (p) a Asn changed to a Group 6 amino acid residue at position 367; (q) a Pro changed to a Group 4 amino acid residue at position 389; and (r) a Pro changed to a Group 2 amino acid residue at position 389.
- 16. The isolated nucleic acid molecule of claim 15 wherein the polypeptide when expressed in an A. terreus cell harboring a lovF gene increases expression of the lovF gene relative to an otherwise identical cell not expressing the polypeptide.
- 17. The isolated nucleic acid molecule of claim 15 wherein the polypeptide when expressed in an S. cerevisiae harboring a gene under the control of the A. terreus lovF expression control region increases expression of the gene relative to an otherwise identical cell not expressing the polypeptide.
- 18. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has fewer than 15 amino acid changes.
- 19. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has fewer than 11 amino acid changes.
- 20. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has fewer than 10 amino acid changes.
- 21. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has fewer than 8 amino acid changes.
- 22. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has fewer than 5 amino acid changes.
- 23. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has fewer than 3 amino acid changes.
- 24. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has one amino acid change.
- 25. The isolated nucleic acid molecule of claim 15 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 95 immediately amino terminal to the amino acid of SEQ ID NO: 91.
- 26. The isolated nucleic acid molecule of claim 15 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 96 immediately amino terminal to the amino acid of SEQ ID NO: 91.
- 27. The isolated nucleic acid molecule of claim 15 wherein the polypeptide has an amino acid change selected from the group consisting of: F31L, Q41K, Q41R, T52I, T52N, C73R, P101S, P101Q, V111I, S133L, E141V, E141K, C153Y, C153R, T281A, N367I, N367Y, P389S, and P389L.
- 28. The isolated nucleic acid molecule of claim 15 comprising a nucleotide sequence selected from the group consisting of: SEQ ID NO: 66, SEQ ID NO: 67, SEQ ID NO: 68, SEQ ID NO: 69, SEQ ID NO: 70, SEQ ID NO: 71, SEQ ID NO: 72, SEQ ID NO: 73, SEQ ID NO: 74, SEQ ID NO: 75, SEQ ID NO: 76, SEQ ID NO: 77, SEQ ID NO: 78, SEQ ID NO: 79, SEQ ID NO: 80, SEQ ID NO: 81, SEQ ID NO: 82, SEQ ID NO: 83, SEQ ID NO: 84, SEQ ID NO: 85, SEQ ID NO: 86, SEQ ID NO: 87, SEQ ID NO: 88, SEQ ID NO: 89, and SEQ ID NO: 90.
- 29. The isolated nucleic acid molecule of claim 15 wherein the nucleotide sequence encoding the polypeptide is contiguous.
- 30. A fungal cell containing a nucleic acid molecule encoding the polypeptide of claim 1.
- 31. A fungal cell containing the nucleic acid molecule of claim 15.
- 32. The fungal cell of claim 30 or 31 wherein the fungus is A. terreus.
- 33. A method for providing a fungal cell having improved production of a secondary metabolite, the method comprising transforming the fungal cell with a nucleic acid molecule of any of claim 15 whereby the fungal cell has increased secondary metabolite production compared to an otherwise identical fungal cell that has not been so transformed.
- 34. The method of claim 33 wherein the secondary metabolite is lovastatin.
- 35. A method for producing a secondary metabolite, the method comprising providing a fungal cell containing the nucleic acid molecule of any of claim 15, culturing the cell under conditions so as to produce the secondary metabolite, and isolating from the cells a fraction containing the secondary metabolite.
- 36. The method of claim 35 wherein the secondary metabolite is lovastatin.
- 37. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO: 91 having an amino acid change selected from the group consisting of: H253R, S341P, R121W, S322G, A83V, T135I, E177G, E197K, T281A, T256A, N466S, C73R, E303K, Q41K, Q41K, P16A, G23S, T9M, Q362E, R21H, S34A, Q80H, A84S, E303D, H374D, A440T, A441V, C445S, P469S, F31L, T409I, M971, E113D, D146N, P163S, H458Y, I43V, Q295L, F31L, C159S, E162K, R293L, S311N, L141, E18V, G138C, E338G, V361L, N400S, S174Y, A402T, F31L, P108S, D85N, I143F, M232I, T315I, S382Y, M385K, T461, Q62R, K77R, S323C, V373I, T294I, P310L, G337D, A394V, G436S, T139, V184I, D4E, V87I, D110E, A189T, N276D, T347R, N367I, Q377R, A425T, D131N, R312G, and A429G.
- 38. The polypeptide of claim 37 wherein the polypeptide when expressed in an A. terreus cell harboring a lovF gene increases expression of the lovF gene relative to an otherwise identical cell not expressing the polypeptide.
- 39. The polypeptide of claim 37 wherein the polypeptide when expressed in an S. cerevisiae harboring a gene under the control of the A. terreus lovF expression control region increases expression of the gene relative to an otherwise identical cell not expressing the polypeptide.
- 40. The isolated polypeptide of claim 37 having fewer than 11 amino acid changes.
- 41. The isolated polypeptide of claim 37 having fewer than 10 amino acid changes.
- 42. The isolated polypeptide of claim 37 having fewer than 8 amino acid changes.
- 43. The isolated polypeptide of claim 37 having fewer than 5 amino acid changes.
- 44. The isolated polypeptide of claim 1 or 37 wherein the polypeptide has an amino acid sequence that is otherwise identical to SEQ ID NO: 91.
- 45. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO: 91 having an amino acid change selected from the group consisting of:
(a) a Val changed to a Group 2 amino acid residue other than Val at position 17; (b) a His changed to a Group 5 amino acid residue other than His at position 39; (c) an Ala changed to a Group 4 amino acid residue at position 40; (d) an Arg changed to a Group 5 amino acid residue other than Arg at position 76; (e) a His changed to a Group 5 amino acid residue other than His at position 96; (f) a Ser changed to a Group 1 amino acid residue at position 112; (g) a Thr changed to a Group 2 amino acid residue at position 119; (h) a Pro changed to a Group 2 amino acid residue at position 183; (i) an Ser changed to a Group 3 amino acid residue at position 186; (j) an Ala changed to a Group 4 amino acid residue at position 204; (k) a deletion of amino acids residues 271-373; (1) an Ile changed to a Group 2 amino acid residue other than Ile at position 283; (m) a Leu changed to a Group 3 amino acid residue at position 288; (n) a Met changed to a Group 2 amino acid residue other than Met at position 299; (o) a Glu changed to a Group 2 amino acid residue at position 303; (p) an Arg changed to a Group 5 amino acid residue other than Arg at position 312; (q) an Asp changed to a Group 2 amino acid residue other than Asp at position 314; (r) a deletion of Ser at position 316, 317, 318, or 319; (s) a Thr changed to a Group 5 amino acid residue at position 396; (t) a Met changed to a Group 2 amino acid residue other than Met at position 418; (u) a Ser changed to a Group 4 amino acid residue other than Ser at position 421; (v) a Leu changed to a Group 6 amino acid residue at position 461; and (w) an Ile changed to a Group 3 amino acid residue at position 467.
- 46. The isolated polypeptide of claim 45 having fewer than 15 amino acid changes.
- 47. The isolated polypeptide of claim 45 having fewer than 11 amino acid changes.
- 48. The isolated polypeptide of claim 45 having fewer than 10 amino acid changes.
- 49. The isolated polypeptide of claim 45 having fewer than 8 amino acid changes.
- 50. The isolated polypeptide of claim 45 having fewer than 5 amino acid changes.
- 51. The isolated polypeptide of claim 45 having fewer than 3 amino acid changes.
- 52. The isolated polypeptide of claim 45 having one amino acid change.
- 53. The isolated polypeptide of claim 45 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 95 immediately amino terminal to the amino acid sequence of SEQ ID NO: 91.
- 54. The isolated polypeptide of claim 45 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 96 immediately amino terminal to the amino acid seqeuence of SEQ ID NO: 91.
- 55. The polypeptide of claim 45 wherein the polypeptide when expressed in an A. terreus cell harboring a lovF gene increases expression of the lovF gene relative to an otherwise identical cell not expressing the polypeptide.
- 56. The polypeptide of claim 45 wherein the polypeptide when expressed in an S. cerevisiae harboring a gene under the control of the A. terreus lovF expression control region increases expression of the gene relative to an otherwise identical cell not expressing the polypeptide.
- 57. An isolated polypeptide comprising the amino acid sequence of SEQ ID NO: 91 having an amino acid change selected from the group consisting of:
(a) V17L; (b) H39L; (c) A40T; (d) R76H; (e) H96R; (f) S112P; (g) T119I; (h) P183L; (i) S186R; (j) A204T; (k) a deletion of amino acids 271-373; (l) I283L; (m) L288Q; (n) M299I; (o) E303V; (p) R312K; (q) D314E; (r) a deletion of S316, S317, S318, or S319; (s) T396K; (t) M418L; (u) S421T; (v) L461F; and (w) I467N.
- 58. The polypeptide of claim 45, wherein the polypeptide has two amino acid changes.
- 59. The isolated polypeptide of claim 45 having two of the following amino acid changes:
(a) D314E; (b) T396K; and (c) M418L.
- 60. The isolated polypeptide of claim 45 having two of the following amino acid changes:
(a) T119I; (b) a deletion of S316, S317, S318, or S319; and (c) S421T.
- 61. The isolated polypeptide of claim 45 having two of the following amino acid changes:
(a) R76H; (b) H96R; and (c) L461F.
- 62. The isolated polypeptide of claim 45 having two of the following amino acid changes:
(a) S186R; (b) L288Q; and (c) R312K.
- 63. The isolated polypeptide of claim 45 having two of the following amino acid changes:
(a) V17L; (b) H39L; (c) a deletion of amino acids 271-373; and (d) I467N.
- 64. The isolated polypeptide of claim 45 having three of the following amino acid changes:
(a) V17L; (b) H39L; (c) a deletion of amino acids 271-373; and (d) I467N.
- 65. The isolated polypeptide of claim 45 comprising an amino acid sequence selected from the group consisting of SEQ ID NO: 97, SEQ ID NO: 98, SEQ ID NO: 99, SEQ ID NO: 100, SEQ ID NO: 101, SEQ ID NO: 102, SEQ ID NO: 103, SEQ ID NO: 104, SEQ ID NO: 105.
- 66. An isolated nucleic acid molecule comprising a nucleotide sequence encoding a polypeptide comprising the amino acid sequence of SEQ ID NO: 91 having at least one amino acid change selected from the group consisting of:
(a) a Val changed to a Group 2 amino acid residue other than Val at position 17; (b) a His changed to a Group 5 amino acid residue other than His at position 39; (c) an Ala changed to a Group 4 amino acid residue at position 40; (d) an Arg changed to a Group 5 amino acid residue other than Arg at position 76; (e) a His changed to a Group 5 amino acid residue other than His at position 96; (f) a Ser changed to a Group 1 amino acid residue at position 112; (g) a Thr changed to a Group 2 amino acid residue at position 119; (h) a Pro changed to a Group 2 amino acid residue at position 183; (i) a Ser changed to a Group 3 amino acid residue at position 186; (j) an Ala changed to a Group 4 amino acid residue at position 204; (k) a deletion of amino acids residues 271-373; (l) a Ile changed to a Group 2 amino acid residue other than Ile at position 283; (m) a Leu changed to a Group 3 amino acid residue at position 288; (n) a Met changed to a Group 2 amino acid residue other than Met at position 299; (o) a Glu changed to a Group 2 amino acid residue at position 303; (p) an Arg changed to a Group 5 amino acid residue other than Arg at position 312; (q) an Asp changed to a Group 2 amino acid residue other than Asp at position 314; (r) a deletion of Ser at position 316, 317, 318, or 319; (s) a Thr changed to a Group 5 amino acid residue at position 396; (t) a Met changed to a Group 2 amino acid residue other than Met at position 418; (u) a Ser changed to a Group 4 amino acid residue other than Ser at position 421; (v) a Leu changed to a Group 6 amino acid residue at position 461; and (w) an Ile changed to a Group 3 amino acid residue at position 467.
- 67. The isolated nucleic acid molecule of claim 66 wherein the polypeptide when expressed in an A. terreus cell harboring a lovF gene increases expression of the lovF gene relative to an otherwise identical cell not expressing the polypeptide.
- 68. The isolated nucleic acid molecule of claim 66 wherein the polypeptide when expressed in an S. cerevisiae cell-harboring a gene under the control of the A. terreus lovF expression control region increases expression of the gene relative to an otherwise identical cell not expressing the polypeptide.
- 69. The isolated nucleic acid molecule of claim 66 wherein the polypeptide has fewer than 11 amino acid changes.
- 70. The isolated nucleic acid molecule of claim 66 wherein the polypeptide has fewer than 10 amino acid changes.
- 71. The isolated nucleic acid molecule of claim 66 wherein the polypeptide has fewer than 8 amino acid changes.
- 72. The isolated nucleic acid molecule of claim 66 wherein the polypeptide has fewer than 5 amino acid changes.
- 73. The isolated nucleic acid molecule of claim 66 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 95 immediately amino terminal to the amino acid sequence of SEQ ID NO: 91.
- 74. The isolated nucleic acid molecule of claim 66 wherein the polypeptide further comprises the amino acid sequence of SEQ ID NO: 96 immediately amino terminal to the amino acid sequence of SEQ ID NO: 91.
- 75. The isolated nucleic acid molecule of claim 66 wherein the polypeptide has one of the following amino acid changes:
(a) V17L; (b) H39L; (c) A40T; (d) R76H; (e) H96R; (f) S112P; (g) T119I; (h) P183L; (i) S186R; (j) A204T; (k) a deletion of amino acids 271-373; (l) I283L; (m) L288Q; (n) M299I; (o) E303V; (p) R312K; (q) D314E; (r) a deletion of S316, S317, S318, or S319; (s) T396K; (t) M418L; (u) S421T; (v) L461F; and (w) I467N.
- 76. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has two of the amino acid changes.
- 77. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has two of the following amino acid changes:
(a) D314E; (b) T396K; and (c) M418L.
- 78. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has two of the following amino acid changes:
(a) T119I; (b) a deletion of S316, S317, S318, or S319; and (c) S421T.
- 79. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has two of the following amino acid changes:
(a) R76H; (b) H96R; and (c) L461F.
- 80. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has two of the following amino acid changes:
(a) S186R; (b) L288Q; and (c) R312K.
- 81. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has two of the following amino acid changes:
(a) V17L; (b) H39L; (c) a deletion of amino acids 271-373; and (d) I467N.
- 82. The isolated nucleic acid molecule of claim 75 wherein the polypeptide has three of the following amino acid changes:
(a) V17L; (b) H39L; (c) a deletion of amino acids 271-373; and (d) I467N.
- 83. The isolated nucleic acid molecule of claim 75 comprising a nucleotide sequence selected from the group consisting of: SEQ ID NO: 97, SEQ ID NO: 98, SEQ ID NO: 99, SEQ ID NO: 100, SEQ ID NO: 101, SEQ ID NO: 102, SEQ ID NO: 103, SEQ ID NO: 104, SEQ ID NO: 105.
- 84. The isolated nucleic acid molecule of claim 75 wherein the nucleotide sequence encoding the polypeptide is contiguous.
- 85. A fungal cell containing a nucleic acid molecule encoding the polypeptide of claim 45.
- 86. A fungal cell containing the nucleic acid molecule of claim 66.
- 87. The fungal cell of claim 85 or 86 wherein the fungus is A. terreus.
- 88. The fungal cell of claim 85 or 86 wherein the fungus is S. cerevisiae.
- 89. A method for providing a fungal cell having improved production of a secondary metabolite, the method comprising transforming the fungal cell with a nucleic acid molecule of claim 66, whereby the fungal cell has increased production of a secondary metabolite compared to an otherwise identical fungal cell that has not been so transformed.
- 90. The method of claim 89 wherein the secondary metabolite is lovastatin.
- 91. A method for producing a secondary metabolite, the method comprising providing a fungal cell containing the nucleic acid molecule of claim 66 and culturing the cell under conditions so as to produce the secondary metabolite.
- 92. The method of claim 91 wherein the secondary metabolite is lovastatin.
- 93. The method of claim 91 further comprising isolating a fraction comprising the secondary metabolite from either the cell or the media in which the cell was cultured.
- 94. The method of claim 91 further comprising measuring the level of the secondary metabolite in the media in which the cell was cultured.
- 95. The isolated polypeptide of claim 45 wherein the polypeptide has an amino acid sequence that is otherwise identical to SEQ ID NO: 91.
- 96. A plasmid comprising a nucleic acid according to of claim 15 or 66.
RELATED APPLICATION INFORMATION
[0001] This application is a continuation-in-part of International Application PCT/US02/32248, filed Oct. 9, 2002, which claims priority from U.S. application Ser. No. 09/974,760, filed Oct. 9, 2001 and U.S. provisional application serial No. 60/328,339, filed Oct. 9, 2001, all of which are hereby incorporated by reference.
Provisional Applications (1)
|
Number |
Date |
Country |
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60328339 |
Oct 2001 |
US |
Continuations (1)
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Number |
Date |
Country |
Parent |
09974760 |
Oct 2001 |
US |
Child |
PCT/US02/32248 |
Oct 2002 |
US |
Continuation in Parts (1)
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Number |
Date |
Country |
Parent |
PCT/US02/32248 |
Oct 2002 |
US |
Child |
10402056 |
Mar 2003 |
US |