Magnesium-S-omeprazole

Information

  • Patent Application
  • 20050267157
  • Publication Number
    20050267157
  • Date Filed
    May 28, 2004
    20 years ago
  • Date Published
    December 01, 2005
    18 years ago
Abstract
The invention provides magnesium S-omeprazolato compounds according to formula (I): [Mg(solva)x(solvb)y][Mg(S-omeprazolato)3]2.(solvc)z  (I), pharmaceutical compositions and processes of making the same. In formula (I), solva, solvb, and solvc represent solvent molecules where x and y are independently selected from integers 0 to 6, the sum of which is 4 or 6, while z is a positive rational number from 0 to 6. The compounds are useful for the treatment of gastric acid related conditions and the inhibition of gastric acid secretion.
Description
BACKGROUND OF THE INVENTION

The present invention relates generally to the field of pharmaceutical agents that are effective as inhibitors of gastric acid secretion. In particular, the invention relates to magnesium coordination complexes of omeprazole and to their pharmaceutical compositions, processes of preparation, and uses.


Various compounds used in inhibiting gastric acid secretion are known in the art and include, in particular, a class of benzimidazole-substituted compounds, one of which is omeprazole. Omeprazole generally refers to rac-5-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole, rac-6-methoxy-2-{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl}-1H-benzimidazole and mixtures thereof. It is currently commercially available in the formulation Prilosec®. U.S. Pat. No. 4,255,431, for example, contemplates such benzimidazole-substituted compounds, their pharmaceutical salts, and optical isomers thereof.


More recent developments in the art pertain to optically pure isomers of omeprazole, specifically S-omeprazole, and its related pharmaceutical salts. Certain disclosures ascribe particularly efficacious pharmaceutical activity to a magnesium salt of S-omeprazole, such as that purportedly contained in the commercial formulation Nexium®. For example, U.S. Pat. No. 5,714,504 to Lindberg et al. discloses a pharmaceutical formulation that comprises a pure solid state alkaline salt of the (−)-enantiomer of 5-methoxy-2-[[(4-methoxy-3,5-dimethyl-2-pyridyl)methyl]sulfinyl]-1H-benzimidazole. The '504 patent discloses in this regard certain optically pure magnesium salts of S-omeprazole and processes of making the same.


U.S. Pat. No. 6,369,085 to Cotton et al. discloses a highly crystalline form of a trihydrate of a magnesium S-omeprazole salt. The '085 patent ascribes certain X-ray powder diffractograms to the salt, thereby purportedly distinguishing it from other crystalline forms of the magnesium S-omeprazole salt. By contrast, WO 04/02982 discloses amorphous forms of the magnesium S-omeprazole salt di- and trihydrates.


These conventional teachings pertaining to the methods of making omeprazole, the purported salts and/or enantiomers thereof, together with formulations that may include these compounds, assume accurate determinations of the chemical structure of omeprazole, its optically pure isomers, and purported salts thereof. For example, as explained in U.S. Pat. No. 6,444,689 to Whittle et al., a methoxy group on the benzimidazole ring of omeprazole, an optically pure isomer, or racemic mixture thereof is stated in the literature to be present at the 5-position. It is now known that the methods of the prior art do not yield a single compound having the methoxy group in the 5-position on the benzimidazole ring, nor do all conventional methods yield consistent results. In this regard, omeprazole as conventionally referred to as a bulk drug substance or active pharmaceutical ingredient (i.e., in its solid state) has been discovered to exist in the form of two pharmaceutically active compounds having the methoxy group on the benzimidazole ring at the 6- and 5-positions. Additionally, the '689 patent discloses the presence of a second chiral location at the pyridine ring plane in each of the two compounds such that each compound has two positional isomers and four diastereomers.


As noted above, the state of the art implicates primarily X-ray powder diffractograms to characterize the purported magnesium salts of S-omeprazole in the cases where crystalline material can be obtained. A potential limitation of relying upon such data, however, is the inherent insensitivity of powder X-ray diffraction to different isostructural compounds generally, and to clathrates in particular. In this context, it is well-known that many pharmaceutical compounds can give rise to similar or nearly identical powder diffractograms, despite the presence of different solvent molecules in various solid-state forms of the compounds. These features are significant because the properties of different forms of a pharmaceutical compound can influence its manufacturing process, dissolution rate, storage stability, and bioavailability. There remains therefore a need in the art to correctly identify and predictably manufacture magnesium compounds of omeprazole, its optically pure isomers, and solvates and combinations thereof.


SUMMARY OF THE INVENTION

The present invention satisfies this need and other needs by providing a magnesium S-omeprazolato coordination complex in the solid state according to formula (I):

[Mg(solva)x(solvb)y] [Mg(S-omeprazolato)3]2.(solvc)z  (I),

wherein solva is a solvent molecule that is selected from the group consisting of H2O; ROH; ROR; RC(O)OR; RC(O)R; RC(S)R; RS(O)R; R2NC(O)R; and an optionally substituted 5- or 6-membered heterocyclic compound comprising at least one heteroatom selected from the group consisting of O, S, and N; solvb is a solvent molecule that is selected from the group consisting of H2O; ROH; ROR; RC(O)OR; RC(O)R; RC(S)R; RS(O)R; R2NC(O)R; and an optionally substituted 5- or 6-membered heterocyclic compound comprising at least one heteroatom selected from the group consisting of O, S, and N; and solvc represents at least one solvent molecule that is selected from the group consisting of H2O; ROH; RC(O)R; RC(O)OR; RC(O)R; RC(S)R; RS(O)R; R2NC(O)R; and an optionally substituted 5- or 6-membered heterocyclic compound comprising at least one heteroatom selected from the group consisting of O, S, and N. When there is more than one solvc, each solvc can be the same or different from another one or more solvc.


Substituent R, at each occurrence, is independently hydrogen or a C1-6-alkyl group. Subscripts x and y, independently of each other, are selected from the integers 0-6 inclusive such that (x+y) is 4 or 6, while z is a positive rational number from 0 to 6, inclusive.


Each S-omeprazolato ligand in formula (I), independently of the others, is an anionic ligand of 5-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole or 6-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole.


The invention also provides a magnesium R-omeprazolato coordination complex in the solid state according to formula (II):

[Mg(solva)x(solvb)y] [Mg(R-omeprazolato)3]2.(solvc)z  (II),

wherein solva, solvb, and solvc are as defined above and R-omeprazolato ligand in formula (I), independently of the others, is an anionic ligand of 5-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole or 6-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole. Additionally, the invention contemplates magnesium omeprazolato coordination complexes in the solid state that are enantiomerically enriched in either S-omeprazolato or R-omeprazolato ligands. Thus, one embodiment is represented by formula IIIa:

[Mg(solva)x(solvb)y][Mg(omeprazolato)3]2.(solvc)z  (IIIa),

    • wherein there exists an enantiomeric excess of S-omeprazolato ligands over R-omeprazolato ligands. Another embodiment is represented by formula IIIb:

      [Mg(solva)x(solvb)y][Mg(omeprazolato)3]2.(solvc)z  (IIIb),

      wherein there exists an enantiomeric excess of R-omeprazolato ligands over S-omeprazolato ligands.


Some embodiments of the invention are identified by their association with certain powder X-ray diffraction patterns. Other embodiments are characterized by specific solid-state NMR spectra. These embodiments are described more fully below.


The invention also provides processes for making the coordination complex of formula (I), products that are made by those processes, pharmaceutical compositions comprising the same, and methods of using the same to treat gastric acid related conditions and to inhibit gastric acid secretion.




BRIEF DESCRIPTION OF THE DRAWINGS


FIG. 1A is an ORTEP of Δ,Δ-[Mg(H2O)5DMF][Mg(6-methoxy-S-omeprazolato)3][Mg(6-methoxy-5-omeprazolato)2(5-methoxy-5-omeprazolato)]·DMF (hydrogen atoms not shown for clarity; 40% thermal ellipsoids).



FIG. 1B is an ORTEP of one Δ-[Mg(6-methoxy-5-omeprazolato)2(5-methoxy-5-omeprazolato)] anion with selected atom labels (hydrogen atoms not shown for clarity; 40% thermal ellipsoids).



FIG. 2A is an ORTEP of the disordered mer-[Mg(H2O)3(DMSO)3]-Δ,Δ-[Mg(methoxy-5-omeprazolato)3]2.(H2O)2 (hydrogen atoms and the three lattice waters are not shown for clarity; 40% thermal ellipsoids; the disorder indicates that predominantly 6-methoxy-5-omeprazolato ligands are present).



FIG. 2B is an ORTEP of one Δ-[Mg(6-methoxy-5-omeprazolato)3] anion with selected atom labels (hydrogen atoms not shown for clarity; 40% thermal ellipsoids).




DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

Definitions


The term “omeprazole”, as used herein unless specified otherwise, refers to a racemic mixture of 5-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole and 6-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole in the solid state. As used herein, “omeprazole” is also represented as 5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole.


The term “omeprazolate,” as used herein unless specified otherwise, refers to the anion of omeprazole.


The term “S-omeprazole” or “esomeprazole”, as used herein unless specified otherwise, refers to the S stereoisomer of omeprazole.


The term “R-omeprazole”, as used herein unless specified otherwise, refers to the R stereoisomer of omeprazole.


The term “S-omeprazolato”, as used herein unless specified otherwise, refers to the S stereoisomer of the coordinated anion of S-omeprazole.


The term “R-omeprazolato”, as used herein unless specified otherwise, refers to the R stereoisomer of the coordinated anion of R-omeprazole.


The terms “SP” and “RP”, as used herein unless specified otherwise, refer to stereoisomers resulting from the arrangement of out-of-plane groups with respect to a plane. Thus, SP refers to a configuration in which bonds to the plane spiral away and down in a clockwise fashion, whereas RP denotes the counterclockwise configuration. In the present context, the person of ordinary skill will appreciate that the pyridyl ring of a S-omeprazolato ligand represents the plane for purposes of determining the configuration.


The term “C1-6-alkyl” refers to a straight or branched alkyl group having from 1 to 6 carbon atoms. Exemplary alkyl groups include but are not limited to methyl, ethyl, n-propyl, iso-propyl, n-butyl, and iso-butyl.


The term “C6-12-aryl” refers to an aromatic, optionally fused, carbocyclic moiety having from 6 to 12 carbon atoms. Examples of C6-12-aryl include but are not limited to phenyl and naphthyl.


The term “enantiomeric excess,” as used herein, refers generally to the concentration of one stereoisomer that exceeds the concentration of another stereoisomer. Typically, the term is used to characterize the optical purity of an optically active compound that exists in the bulk as two or more stereoisomers. In the present context, the term also refers to the excess of either S- or R-omeprazolato ligands over the other that are present in a given compound of the present invention. Both of these possibilities are contemplated.


The term heterocycle or heterocyclic compound, as used herein, represents a stable 5- to 7-membered monocyclic or stable 8- to 11-membered bicyclic heterocyclic ring which is either saturated or unsaturated, and which consists of carbon atoms and from one to four heteroatoms selected from the group consisting of N, O, and S, and including any bicyclic group in which any of the above-defined heterocyclic rings is fused to a benzene ring. The heterocyclic ring may be attached at any heteroatom or carbon atom which results in the creation of a stable structure. Examples of such heterocyclic compounds include, but are not limited to, azepine, benzimidazole, benzisoxazole, benzofurazan, benzopyran, benzothiopyran, benzofuran, benzothiazole, benzothiene, benzoxazole, benzopyrazole, chromane, cinnoline, dibenzofuran, dihydrobenzofuran, dihydrobenzothiene, dihydrobenzothiopyran, dihydrobenzothiopyran sulfone, furanyl, imidazolidine, imidazoline, imidazole, indoline, indole, isochromane, isoindoline, isoquinoline, isothiazolidine, isothiazole, isothiazolidine, morpholine, naphthyridine, oxadiazole, 2-oxoazepine, 2-oxopiperazine, 2-oxopiperdine, 2-oxopyrrolidine, 2-oxopyridine, 2-oxoquinoline, piperidine, piperazine, pyridine, pyrazine, pyrazolidine, pyrazole, pyridazine, pyrimidine, pyrrolidine, pyrrole, quinazoline, quinoline, quinoxaline, tetrahydrofuran, tetrahydroisoquinoline, tetrahydroquinoline, thiamorpholine, thiamorpholine sulfoxide, thiazole, thiazoline, thienofuran, thienothiene, thiene, and triazole.


Compounds


The inventors surprisingly discovered that the anion of omeprazole or an optical isomer thereof does not combine with magnesium(II) to form a salt as taught in the art, but rather coordinates as a ligand to magnesium(II) to form a coordination complex represented by formula (I):

[Mg(solva)x(solvb)y][Mg(S-omeprazolato)3]2.(solvc)z  (I),

In accordance with general chemical principles, a compound represented by formula (I) is itself a salt, but the portion of the compound containing S-omeprazolato ligands is a coordination complex. In this context, one magnesium(II) center complexes a total of 4 to 6 solvent molecules represented by solva and solvb, the individual number of complexed solvent molecules being designated by x and y, respectively. Preferably, the sum of x and y is 6, thereby corresponding to a six-coordinate magnesium(II) ion. In maintaining overall charge neutrality, therefore, the compound of formula (I) incorporates two magnesium(II) coordination complexes that each bear three S-omeprazolato ligands, giving each such coordination complex a formal charge of −1. Solvents solva, solvb, and solvc need not be the same, and in some cases that are described below they are often not the same.


Compounds of formula (I) also may contain one or more solvents denoted as solvc. In the context of this invention, solvc, if present, accounts for solvates, that is, those compounds for which the bulk material contains solvent molecules that are not associated with either type of magnesium(II) center in formula (I). Common examples of such solvates are crystalline materials in which solvent molecules are trapped within the crystalline lattice. Polymorphs or amorphous forms of the compounds may also comprise solvents. Underlying the notion that the number of solvc in formula (I) is not subject to the strictures of bonding principles governing the identity of the magnesium(II) centers is the possibility that solvc can be present in fractional amounts, that is, where z is a positive rational number from 0 to 6, inclusive. Additionally, each solvc, if there is more than one, can be the same or different from the other solvents solva, solvb, or solvc.


Solvents solva, solvb, and solvc are independently selected from the group consisting of H2O; ROH; ROR; RC(O)OR; RC(O)R; RC(S)R; RS(O)R; and R2NC(O)R. One or more of the mentioned solvents can also be an optionally substituted 5- or 6-membered heterocyclic compound comprising at least one heteroatom selected from the group consisting of O, S, and N. Substituent R, at each occurrence, is independently hydrogen or a C1-6-alkyl group. The alkyl groups can be straight or branched. Typical alkyl groups, when present, thus include but are not limited to methyl, ethyl, propyl and isopropyl, butyl, sec-butyl, tert-butyl, pentyl, and hexyl. The most preferred alkyl groups are methyl and ethyl.


Preferred solvents represented by solva, solvb, and solvc include but are not limited to water, dimethylsulfoxide (“DMSO”), N,N-dimethylformamide (“DMF”), acetone, and C1-6-alkyl alcohols such as methanol and ethanol. Thus in one set of preferred embodiments, solva, solvb, and solvc are independently selected from DMF and water, preferably where solva is water while solvb and solvc each are DMF. Alternatively, solva, solvb, and solvc are independently selected from DMSO and water. In yet other embodiments, at least one of solva, solvb, and solvc is water, DMSO, acetone, methanol, or ethanol.


As mentioned above, a preferred sum of x and y is 6 for the [Mg(solva)x(solvb)y]2+ cation, corresponding to an octahedral coordination environment about magnesium(II) for this complex. The skilled artisan will appreciate that depending upon the identities of solva and solvb, together with the individual values for x and y, a given definition of these variables can give rise to various geometric isomers of the complex. For example, complexes of the type [Mg(solva)4(solvb)2]2+ or [Mg(solva)2(solvb)4]2+ can exist as cis and trans isomers. Alternatively, complexes of the type [Mg(solva)3(solvb)3]2+ can give rise to fac and mer isomers, referring to the facial or meridional arrangement, respectively, of the solva and solvb ligands. The invention contemplates all of these possibilities. Additionally, steric bulk from large solvents solva and solvb may effect distortions from an ideal octahedral environment. A preferred isomer in this regard is mer-[Mg(solva)3(solvb)3]2+, such as, for example, mer-[Mg(H2O)3(DMSO)3]2+.


Compounds according to formula (I) exhibit chirality in four respects. First, the sulfur atom in each S-omeprazolato ligand is a stereogenic center. In this regard, a preferred subset of compounds is one in which at least one, more preferably three, and most preferably six sulfur atoms are the S stereoisomer. Alternatively, at least one, and preferably all, of the sulfur atoms are the R stereoisomer. Thus, the invention contemplates all combinations of sulfur stereoisomers. Compounds in which all of the sulfur atoms are the R-stereoisomer are represented by formula II:

[Mg(solva)x(solvb)y][Mg(R-omeprazolato)3]2.(solvc)z  (II).


It is possible, however, that a compound of the present invention does not contain purely S- or R-omeprazolato ligands, but rather is enriched in one over the other. The resultant mixture of ligands thus gives rise to magnesium (II) omeprazolato coordination complexes that exhibit an enantiomeric excess of either S- or R-omeprazolato ligands. The invention therefore contemplates compounds according to formula IIIa:

[Mg(solva)x(solvb)y][Mg(omeprazolato)3]2.(solvc)z  (IIIa),

in which the omeprazolato ligands are enriched in the S stereoisomer, and compounds according to formula IIIb,

[Mg(solva)x(solvb)y][Mg(omeprazolato)3]2.(solvc)z  (IIIb),

in which the omeprazolato ligands are enriched in the R stereoisomer.


The compounds of formula (I) are also chiral with respect to the pyridyl group as a whole in each S-omeprazolato ligand. This is so because the 3- and 5-methyl substituents on the pyridyl group constrain the 4-methoxy substituent to lie either above or below the plane of the pyridine ring. Consequently, the pyridyl group introduces a structural chirality when the S-omeprazolato ligand is bound to the magnesium(II) center. The two resultant stereochemical configurations are herein designated as SP and RP. Preferably, at least one, more preferably at least 3, and most preferably all of the pyridyl rings exist in the SP configuration.


A third aspect in which compounds of formula (I) exhibit chirality arises from the possible optical isomers created by the chiral magnesium(II) coordination polyhedron in each [Mg(S-omeprazolato)3] complex. Referring to FIGS. 1B and 2B, for example, each S-omeprazolato ligand behaves as a bidentate ligand as a consequence of it coordinating to magnesium(II) through one benzimidazole nitrogen atom and the oxygen atom in the sulfoxide moiety. The presence of three such ligands in an octahedral coordination environment thus gives rise to two possible propeller shaped optical isomers referred to herein as the A and A stereoisomers. Consistent with these conventional designations, the A stereoisomer thus would appear to screw into a plane, while the A stereoisomer would appear to screw out of a plane, when rotated clockwise. In preferred embodiments, at least one and preferably each [Mg(S-omeprazolato)3] complex is present as the Δ stereoisomer. Alternatively, at least one and preferably each [Mg(S-omeprazolato)3] complex is present as the Δ stereoisomer.


A fourth respect in which compounds of formula (I) exhibit chirality arises from the possible optical isomers that result from the bidentate binding nature of the S-omeprazolato ligands. Each S-omeprazolato ligand is bidentate ligand as a consequence of it coordinating to magnesium(II) through one benzimidazole nitrogen atom and the oxygen atom in the sulfoxide moiety. The presence of such bidentate ligands thus gives rise to two possible orientations, denoted δ and λ, of the atoms in the ligand backbone that are not directly coordinated to magnesium(II). Thus, when the S-omeprazolato ligand is oriented such that the N and O donor atoms and magnesium(II) lie in plane that is perpendicular to the viewing plane, then the δ chelate ring conformation places the benzimidazole aromatic carbon atom below the aromatic system of the pyridine ring and the S atom above this viewing plane. By contrast, the λ chelate ring conformation places the aromatic carbon of the benzimidazole system above the aromatic pyridine ring and the S atom below the viewing plane.


Compounds according to formula (I) also account for two possible structural isomers of the S-omeprazolato ligand with respect to the methoxy substituent on the benzimidazole moiety. It is known in the art that omeprazole, when in solution, tautomerizes to place the N—H proton on one of the two benzimidazole nitrogen atoms, thereby often yielding a mixture of 5-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole and 6-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole. Solid state properties, and methods for enriching a mixture of the same in one isomer, are described, for example, in U.S. Pat. No. 6,444,689 to Whittle et al. Compounds of formula (I) therefore accommodate S-omeprazolato ligands that bear 5- and 6-methoxy substituents on the benzimidazole moieties. In preferred embodiments, at least one, at least three, at least four, and at least five S-omeprazolato ligands bear 6-methoxy groups, the most preferred embodiment being where each S-omeprazolato ligand bears a 6-methoxy group. Where applicable, the remaining S-omeprazolato ligands bear 5-methoxy groups.


Particularly preferred subsets of compounds according to formula (I) are those in which all of the sulfur atoms are the S- or R-stereoisomers, at least four or at least five S-omeprazolato ligands bear 6-methoxy groups, and each [Mg(S-omeprazolato)3] complex is present as the Δ stereoisomer. Exemplary compounds in this regard include but are not limited to:

    • Δ,Δ-[Mg(H2O)5DMF] [Mg(6-methoxy-5-omeprazolato)3] [Mg(6-methoxy-S-omeprazolato)2(5-methoxy-5-omeprazolato)].DMF;
    • Δ,Δ-[Mg(H2O)5DMF] [Mg(6-methoxy-5-omeprazolato)3] [Mg(6-methoxy-S-omeprazolato)2(5-methoxy-5-omeprazolato)]. H2O;
    • Δ,Δ-[Mg(H2O)5DMF] [Mg(6-methoxy-5-omeprazolato)3][Mg(6-methoxy-S-omeprazolato)2(5-methoxy-5-omeprazolato)].(H2O)z(DMF)z; and
    • mer-[Mg(H2O)3(DMSO)3]-Δ,Δ-[Mg(6-methoxy-5-omeprazolato)3]2.(H2O)2.


      Processes for Preparing


The compounds represented by formula (I) may be prepared by various methods as described below. In general, the methods entail carrying out synthetic procedures in solution, but result in optically pure solid products with respect to the chiral sulfur atom in each S-omeprazolato ligand.


One embodiment thus comprises applying to a chromatography column a racemic mixture of 5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole that is dissolved in a first solvent. The person of skill in the art will recognize that this compound tautomerizes in solution, which furnishes a mixture of the 5- and 6-methoxy isomers as taught, for example, by U.S. Pat. No. 6,444,689 to Whittle et al. The chromatography column preferably is one of many standard columns that accommodates supercritical fluids such as, for example, supercritical CO2. More preferably, the column is packed with a chiral chromatographic sorbent to facilitate the separation of optical isomers.


The mixture as described above is then eluted through the column with an eluant comprising a supercritical fluid, such as CO2, and one or more optional co-solvents and/or salts thereof that enhance the solubility, stabilization, separation, or combination thereof for a mixture of compounds. Suitable co-solvents in this regard include but are not limited to C1-6-alkyl alcohols such as, for example, methanol and ethanol. Preferably, the eluant comprises a mixture of co-solvents that further include one or more amines. Preferable amines in this in this regard include but are not limited to tertiary amines according to the formula NR1R2R3 wherein R1, R2, and R3 are independently selected from H and C1-6-alkyl. Preferred amines include but are not limited to dimethylamine, triethylamine, and dimethylethylamine. The eluant may also comprise acid addition salts of the foregoing amines. These include, for example, acetates and halides such as chloride, bromide, and iodide. The most preferred salt is ammonium acetate. In this context, separate fractions of S-omeprazole and R-omeprazole may be collected from the column as mixtures of 5- and 6-methoxy isomers.


S-Omeprazole may be used as obtained from the foregoing separation in the preparation of compounds of formula (I). Thus S-omeprazole is reacted with a magnesium source in a second solvent. The magnesium source provides the requisite Mg(II) ions and facilitates the deprotonation of S-omeprazole ligands. In one embodiment, the magnesium source is a Grignard reagent according to the formula XMgR, wherein X is a halide selected from Cl, Br, and I and R is an organic species selected from C1-6-alkyl and C6-12-aryl. Many reagents of this type are suitable for the inventive process and are known to those who are skilled in the art. A typical magnesium source in this context is methyl magnesium bromide.


Another suitable magnesium source are reagents according to the formula MgR2, wherein R is as defined above. As the skilled artisan knows, MgR2 exists in equilibrium with MgRX and MgX2. In this regard, it is possible to generate the MgR2 reagent by displacing the equilibrium away from MgRX. One convenient method for accomplishing this is by the addition of a reagent that will precipitate MgX2, thereby driving the equilibrium toward MgR2. A suitable reagent in this regard is 1,4-dioxane.


In another embodiment, the magnesium source is a magnesium(II) alkoxide compound according to the formula Mg(OR4)2, wherein R4 is selected from C1-6-alkyl and C6-12-aryl. Preferably, R4 is a C1-6-alkyl. Suitable magnesium alkoxide compounds in this regard include but are not limited to Mg(OMe)2 and Mg(OEt)2.


In yet other embodiments of the process, the magnesium source is an inorganic magnesium salt. Preferably, the anion(s) in the salt are capable of being readily displaced by the S-omeprazolato ligands. Exemplary magnesium salts thus include but are not limited to any soluble form of magnesium such as, for example, magnesium halides, e.g., MgCl2, MgBr2, MgI2, and mixed halides thereof; magnesium acetate; magnesium sulfate; magnesium phosphate; magnesium formate; magnesium tartrate, and magnesium carbonate.


An alternative procedure according to this invention entails the complexation of optically pure omeprazolate salts. Thus, a racemic mixture of 5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole is reacted with an organic base to furnish a racemic mixture of the corresponding omeprazolate salt. Suitable organic bases in this regard include but are not limited to tetraalkylammonium salts of the formula N(R5)4X wherein R5 is a C1-6-alkyl and X is a suitable nucleophilic anion such as, for example, OH, (OR5), (SR5), (PR52), and (NR5)2. The salt mixture is then dissolved in a first solvent, preferably to form a concentrated solution, and applied to a chromatography column as described above. The mixture is eluted through the column with a supercritical fluid and an optional co-solvent according to the procedure outlined above to yield separate fractions of R- and S-omeprazolate salts. The S-omeprazolate salt then may be combined with a magnesium source in a second solvent to give the corresponding magnesium S-omeprazolato complex. Suitable magnesium sources for use in this embodiment include but are not limited to magnesium halides, e.g., MgCl2, MgBr2, MgI2, and mixed halides thereof; magnesium acetate; magnesium sulfate; magnesium phosphate; magnesium formate; magnesium tartrate; and magnesium carbonate.


Compounds according to the present invention also may be prepared by employing a starting material that is enantiomerically enriched, i.e., where the concentration of the R or S stereoisomer in the bulk starting material predominates over the other stereoisomer. In this context, the resulting compound of formula I should have at least one, and up to five, omeprazolato ligands that are coordinated to Mg(II) and that are the same stereoisomer. These compounds can be prepared by adapting any of the teachings herein by substituting enantiomerically enriched omeprazole for enantiomerically pure omeprazole.


In the foregoing inventive processes, suitable first and second solvents are judiciously selected according to the requirements of the synthetic step. Thus, the first solvent is selected to dissolve the mixture of omeprazole optical isomers or salts thereof. In this regard, the resultant solution preferably is as concentrated as possible. Suitable first solvents therefore include but are not limited to aqueous solvents such as water and ammonia and organic solvents. Exemplary organic solvents typically are ketones, such as acetone and methylethyl ketone; nitriles, such as acetonitrile; nitrogen-based solvents, such as dimethylformamide (DMF) and pyridine; aromatic solvents, such as toluene and benzene; alcohols, such as methanol and ethanol; halogenated solvents, such as chloroform and methylene chloride; and sulfur-containing solvents, such as dimethylsulfoxide. Mixtures of two or more of these solvents also may be employed.


The second solvent generally can be selected from the foregoing list subject to the strictures of the reaction between S-omeprazole and a magnesium source. Thus, for example, protic solvents generally should be avoided when using Grignard reagents.


The magnesium S-omeprazolato complexes resulting from the foregoing processes typically are precipitated by, and preferably crystallized from, one or more solvents represented by solva, solvb, and solvc as described above. Specific techniques for crystallization are well-known in the art and include, for example, evaporation, cooling, vapor diffusion, liquid diffusion, and combinations thereof. Regardless of the crystallization technique, the compound of formula (I) typically contains solvent molecules of the solvent(s) employed for crystallization. Thus, for example, crude magnesium S-omeprazolato compounds may contain water and, when crystallized from a different solvent, may contain molecules of that solvent as solva, solvb, and/or solvc. When the magnesium S-omeprazolato compounds are exposed to multiple solvents, the representation of those solvents as solva, solvb, and solvc in the compounds of formula (I) can vary according to, inter alia, crystallization technique and nature of the solvent(s). Exemplary crystallization procedures and resultant compounds are given in the examples below.


As a consequence of the foregoing considerations, compounds of the present invention may exist as clathrates with respect to solva, solvb, and solvc. In accordance with accepted terminology in the art, a clathrate generally relates to inclusion complexes in which molecules of one substance are completely enclosed within the crystal structure of another. Thus in the present context, one or more of solvc may be viewed as being enclosed within the crystal structure of a compound of formula (I). More particularly, as mentioned above, it should be recognized that several clathrates each may give rise to substantially the same X-ray powder diffraction pattern, notwithstanding the presence of different solva, solvb, and solvc within each clathrate. In this regard, therefore, formula (I) of the present invention accounts for the existence of one or more clathrates. Thus, X-ray powder diffraction is not sufficient to completely determine the composition of such a clathrate.


Pharmaceutical Composition


The invention also contemplates pharmaceutical compositions that comprise a therapeutically effective amount of at least one compound of formula (I) according to this invention and a pharmaceutically acceptable carrier, diluent, excipient, stimulant, or combination thereof, the selection of which is known to the skilled artisan. In one embodiment, a solid pharmaceutical composition of the present invention is blended with at least one pharmaceutically acceptable excipient, diluted by an excipient or enclosed within such a carrier that can be in the form of a capsule, sachet, tablet, buccal, lozenge, paper, or other container. When the excipient serves as a diluent, it may be a solid, semi-solid, or liquid material which acts as a vehicle, carrier, or medium for the compound. Thus, the formulations can be in the form of tablets, pills, powders, elixirs, suspensions, emulsions, solutions, syrups, capsules (such as, for example, soft and hard gelatin capsules), suppositories, lozenges, buccal dosage forms, sterile injectable solutions, and sterile packaged powders.


Examples of suitable excipients include, but are not limited to, starches, gum arabic, calcium silicate, microcrystalline cellulose, polyvinylpyrrolidone, cellulose, water, syrup, and methyl cellulose. The compositions can additionally include lubricating agents such as, for example, talc, magnesium stearate and mineral oil; wetting agents; emulsifying and suspending agents; preserving agents such as methyl- and propyl hydroxybenzoates; sweetening agents; or flavoring agents. Polyols, buffers, and inert fillers may also be used. Examples of polyols include, but are not limited to: mannitol, sorbitol, xylitol, sucrose, maltose, glucose, lactose, dextrose, and the like. Suitable buffers encompass, but are not limited to, phosphate, citrate, tartrate, succinate, and the like. Other inert fillers which may be used encompass those which are known in the art and are useful in the manufacture of various dosage forms. If desired, the solid pharmaceutical compositions may include other components such as bulking agents and/or granulating agents, and the like. The compositions of the invention can be formulated so as to provide normal, sustained, or delayed release of the compound after administration to the patient by employing procedures well known in the art.


In the event that a foregoing composition is to be used for parenteral administration, such a composition typically comprises sterile aqueous and non-aqueous injection solutions comprising the ion pair compound, for which preparations are preferably isotonic with the blood of the intended recipient. These preparations may contain anti-oxidants, buffers, bacteriostats, and solutes which render the formulation isotonic with the blood of the intended recipient. Aqueous and non-aqueous sterile suspensions may include suspending agents and thickening agents.


The compositions may be presented in unit-dose or multi-dose containers, for example sealed ampules and vials. Extemporaneous injection solutions and suspensions may be prepared from sterile powders, granules and tablets of the kind previously described.


In preferred embodiments of the invention, the composition may be made into the form of dosage units for oral administration. The compound of formula (I) may be mixed with a solid, pulverant carrier such as, for example, lactose, saccharose, sorbitol, mannitol, starch, amylopectin, cellulose derivatives or gelatin, as well as with an antifriction agent such as, for example, magnesium stearate, calcium stearate, and polyethylene glycol waxes. The mixture is then pressed into tablets. If coated tablets are desired, the above prepared core may be coated with a concentrated solution of sugar, which may contain gum arabic, gelatin, talc, titanium dioxide, or with a lacquer dissolved in volatile organic solvent or mixture of solvents. To this coating, various dyes may be added in order to distinguish among tablets with different active compounds or with different amounts of the active compound present.


Soft capsules also may be prepared in which capsules contain a mixture of the compound and vegetable oil or non-aqueous, water miscible materials such as, for example, polyethylene glycol and the like. Hard capsules may contain granules of the compound in combination with a solid, pulverulent carrier, such as, for example, lactose, saccharose, sorbitol, mannitol, potato starch, corn starch, amylopectin, cellulose derivatives, or gelatin.


Dosage units for rectal administration may be prepared in the form of suppositories which may contain the compound in a mixture with a neutral fat base, or they may be prepared in the form of gelatin-rectal capsules which contain the active substance in a mixture with a vegetable oil or paraffin oil.


Liquid preparations for oral administration may be prepared in the form of syrups or suspensions, e.g., solutions containing the compound, sugar, and a mixture of ethanol, water, glycerol, and propylene glycol. If desired, such liquid preparations may contain coloring agents, flavoring agents, and saccharin. Thickening agents such as carboxymethylcellulose may also be used.


Tablets for oral use are typically prepared in the following manner, although other techniques may be employed. The solid substances are gently ground or sieved to a desired particle size, and the binding agent is homogenized and suspended in a suitable solvent. The compound of formula (I) and auxiliary agents are mixed with the binding agent solution. The resulting mixture is moistened to form a uniform suspension. The moistening typically causes the particles to aggregate slightly, and the resulting mass is gently pressed through a stainless steel sieve having a desired size. The layers of the mixture are then dried in controlled drying units for determined length of time to achieve a desired particle size and consistency. The granules of the dried mixture are gently sieved to remove any powder. To this mixture, disintegrating, anti-friction, and anti-adhesive agents are added. Finally, the mixture is pressed into tablets using a machine with the appropriate punches and dies to obtain the desired tablet size. The operating parameters of the machine may be selected by the skilled artisan.


Typically, preparation of lozenge and buccal dosage forms are prepared by methods known to one of ordinary skill in the art.


In other embodiments, the compound may be present in a core surrounded by one or more layers including, for example, an enteric coating layer with or without a protective sub-coating as known to the ordinarily skilled artisan relative to pharmaceutical formulations. If no sub-coating is employed, then the enteric coating should be selected such that it does not degrade the active ingredient in the core.


The final dosage form encompassing the above embodiments may be either an enteric coated tablet or capsule or in the case of enteric coated pellets, pellets dispensed in hard capsules or sachets or pellets formulated into tablets. It is desirable for long term stability during storage that the water content of the final dosage form containing the compound of formula (I) (enteric coated tablets, capsules or pellets) be kept low. As a consequence, the final package containing hard capsules filled with enteric coated pellets preferably also contain a desiccant, which reduces the water content of the capsule shell to a level where the water content of the enteric coated pellets filled in the capsules does not exceed a certain level.


Accordingly, the compound and composition of the present invention are preferably formulated in a unit dosage form, each dosage containing from about 10 mg to about 400 mg, and more preferably the amount set forth herein. The term “unit dosage form” refers to physically discrete units, such as capsules or tablets suitable as unitary dosages for human patients and other mammals, each unit containing a predetermined quantity of one or more compound(s) calculated to produce the desired therapeutic effect, in association with at least one pharmaceutically acceptable carrier, diluent, excipient, or combination thereof. Generally, preferred dosages of the compound in such unit dosage forms are from about 10 mg to about 15 mg, about 20 mg to about 25 mg, about 40 mg to about 80 mg, and about 80 mg to about 400 mg, especially 11 mg, 22 mg, and 43 mg, and 86 mg per dosage unit.


Methods of Treatment


The invention also provides methods of treating gastric acid related conditions and gastric acid secretion in a subject suffering from the conditions or secretion comprising administering to the subject a therapeutically effective amount of the compound of formula (I). Alternatively, the method comprises administering the pharmaceutical composition thereof as described above.


Preferably, the subject suffering from the condition is an animal. More preferably, the animal is a mammal. The most preferred mammal is a human being. Other examples of mammals include but are not limited to monkeys, sheep, bovines, horses, dogs, cats, rabbits, rats, and mice.


As used herein, the term “treatment” or “treating” contemplates partial or complete inhibition of the stated condition or disease state when a compound of formula (I) or its pharmaceutical composition is administered prophylactically or following the onset of the condition for which the compound or composition is administered. For the purposes of this invention, the term “prophylaxis” refers to the administration of the compound to subject to protect the subject from any of the conditions set forth herein.


More specifically, the gastric acid related condition typically is a digestive ulcer (e.g., gastric ulcer, duodenal ulcer, stomal ulcer, Zollinger-Ellison syndrome, etc.), gastritis, reflux esophagitis, NUD (non-ulcer dyspepsia), gastric cancer and gastric MALT lymphoma; Helicobacter pylori eradication. Other conditions include but are not limited to duodenal cancer, heartburn, erosive esophagitis, pathological hypersecretary conditions, duodenitis, non-ulcer dyspepsia, and acute upper gastrointestinal bleeding. The inventive method is also useful for the suppression of upper gastrointestinal hemorrhage due to digestive ulcer, acute stress ulcer and hemorrhagic gastritis; suppression of upper gastrointestinal hemorrhage due to invasive stress (stress from major surgery necessitating intensive management after surgery, and from cerebral vascular disorder, head trauma, multiple organ failure and extensive burns necessitating intensive treatment); treatment and prevention of ulcer caused by a nonsteroidal anti-inflammatory agent; treatment and prevention of hyperacidity and ulcer due to postoperative stress; and pre-anesthetic administration.


In particular, the present invention is useful in healing of erosive esophagitis. In patients with gastro-esophageal reflux disease (GERD), stomach acid backs up into the esophagus due to inappropriate relaxation of the lower esophageal sphincter (LES). If left untreated, this acid can wear away or erode the lining of the esophagus since, unlike the stomach, there is no protective lining to protect the esophagus from stomach acid. Once the esophagus is healed from such erosions, the present invention can be used for maintenance of the healed esophagus.


Compounds of formula (I) of the present invention can also be used to treat symptomatic gastroesophageal reflux disease, otherwise known as acid reflux disease. Acid reflux disease occurs when the reflux of stomach acid into the esophagus is frequent enough to impact daily life and/or damage the esophagus. Acid reflux occurs when the lower esophageal sphincter (LES), which normally opens and closes allowing food to enter and prevents the acid in the stomach from backing up into the esophagus, opens at inappropriate times, allowing acid from the stomach to enter the esophagus.


Compounds of formula (I) can also be used to treat duodenal ulcer disease as mentioned above. A duodenal ulcer is a type of peptic disease that is caused by an imbalance between acid and pepsin (an enzyme) secretion and the defenses of the mucosal lining. The inflammation may be precipitated by aspirin and selective or non-selective COX-2 specific inhibitors.


Duodenal ulcers are commonly associated with the presence of the bacteria Helicobacter pylori in the stomach. Risk factors are aspirin and NSAID use, cigarette smoking, and older age. Duodenal ulcer has historically occurred more frequently in men, but more recent data suggest similar rates in both men and women. The lifetime prevalence of a peptic ulcer is 5 to 10% and approaches 10 to 20% in patients who are Helicobacter pylori positive.


The present invention also contemplates a method of inhibiting gastric acid secretion in a subject comprising administering to the subject a therapeutically effective amount of a compound of formula (I) or pharmaceutical composition thereof. While not being bound to any one theory, the inventors believe that the present invention is effective in treating the gastric disorders by acting as a proton pump inhibitor. Proton pump inhibitors suppress gastric acid secretion by specific inhibition of the H+/K+-ATPase in the gastric parietal cell. By acting on the proton pump, compounds of formula (I) block the last step in acid production which has the overall effect of reducing gastric secretions.


The following examples are proffered merely to illustrate the invention described above; they are not intended to limit in any way the scope of this invention. Throughout the specification, any and all cited publicly available documents are specifically incorporated into this patent application by reference as if fully set forth herein.


EXAMPLE 1

Preparation of Magnesium S-Omeprazole from S-Omeprazole and Methyl Magnesium Bromide via Grignard Reaction.


Methyl magnesium bromide (2.1 mL, 6.3 mmol, 3.0 M in diethyl ether) was added by syringe to a Schlenk flask (100 mL) under a nitrogen purge. 1,4-Dioxane (5 mL) was added to the flask in order to precipitate all magnesium salts, leaving dimethyl magnesium in solution. In a separate Schlenk flask (25 mL), S-omeprazole obtained from chiral high performance liquid chromatography (HPLC; 56.60 mg, 0.16 mmol; see Example 15 for conditions) was dissolved in toluene (10 mL). The dimethyl magnesium solution was removed from the Schlenk flask by syringe and gradually added to the S-omeprazole solution. The reaction solution appeared inactive; therefore, an aliquot of methyl magnesium bromide (1.8 mL, 5.4 mmol, 3.0 M in diethyl ether) was added to the flask by syringe and the resulting suspension stirred. A sufficient amount of ice cold water was added to the reaction mixture and the contents of the Schlenk flask transferred to a separatory funnel with a small portion of diethyl ether. The aqueous layer was separated from the organic layer and after washing with water, the organic layer was set aside. The aqueous layers were combined and allowed to stand for 12 hours in an attempt to form crystals. The aqueous sample was then heated to 38° C. for 3 hours. Crystallization was unsuccessful. After removal from heat, the aqueous sample was set aside for approximately 10 days after which time the water was removed by rotary evaporation to form a dense yellow oil. The oil was dissolved in a sufficient amount of dimethylformamide and a small amount of ethyl acetate was added until a white precipitate began to form. The aqueous solution was set aside to allow for further crystallization for 2.5 days.


EXAMPLE 2

Preparation of Magnesium S-Omeprazole from S-Omeprazole and Methyl Magnesium Bromide via a Grignard Reaction.


S-Omeprazole (103.06 mg, 0.30 nmol) was separated from rac-omeprazole free base by means of chiral HPLC (see Example 15) and dissolved in sufficient deoxygenated tetrahydrofuran in a clean, dry Schlenk flask (25 mL). Methyl magnesium bromide (2.0 mL, 6.0 mmol, 3.0 Min diethyl ether) was added slowly by syringe. Immediately, the evolution of a gas was observed and the reaction was allowed to stir under ambient conditions for two hours. A small quantity of ice cold water was added to the flask resulting in a vigorous exothermic reaction. Additional water was added and a yellow solid formed. The contents of the flask were transferred to a 1 L separatory funnel with water, diethyl ether, and tetrahydrofuran. An emulsion formed and concentrated ammonium hydroxide was added to the separatory funnel in an amount sufficient to dissipate the emulsion.


EXAMPLE 3

Preparation of Magnesium S-Omeprazole from S-Omeprazole and Magnesium Methoxide.


Magnesium metal (14.429 mg, 0.5937 mmol) was placed in a small, dry Schlenk flask with methanol (5 mL). The flask was fitted with a nitrogen purge and the solution warmed to 40° C. to dissolve the metal. S-Omeprazole, separated from rac-omeprazole free base by chiral HPLC (see Example 16; 0.09954 g, 0.2882 mmol), was dissolved in methanol (7 mL) and added to the Schlenk flask. The solution was stirred under nitrogen for 48 hours. Water (8 μL) was added to the Schlenk flask and stirred for 30 minutes to facilitate the precipitation of magnesium salts. The magnesium salts were removed by filtration through a Whatman #4 paper filter. Any remaining solids were removed from the pink supernatant solution by filtration through 0.45-μm polytetrafluoroethylene (PTFE). The solution was concentrated by rotary evaporation. Acetone (10 mL) was added and the solution placed under refrigeration for 2 days.


EXAMPLE 4

Preparation of Magnesium S-Omeprazole and Magnesium R-Omeprazole from S-Omeprazole and R-Omeprazole and Methyl Magnesium Bromide via Grignard Reaction.


1,4-Dioxane (5 mL) was placed in a three-neck round bottom flask (250 mL) and the solvent deoxygenated with nitrogen. Methyl magnesium bromide (10 mL, 30 mmol, 3.0 M in diethyl ether) was added by syringe to the flask. A white precipitate formed and the resulting mixture of dimethyl magnesium was stirred under nitrogen. Deoxygenated tetrahydrofuran (5 mL) was added to the flask and stirred. R-Omeprazole (500 mg, 1.448 mmol) separated from rac-omeprazole free base by means of SFC (see Example 10), was dissolved in a sufficient amount of tetrahydrofuran and transferred into a Schlenk flask (100 mL). S-Omeprazole (500 mg, 1.448 mol), which was also separated by means of SFC (see Example 10), was dissolved in a sufficient amount of tetrahydrofuran, and placed in another Schlenk flask. At ambient temperature, portions of dimethyl magnesium (approximately 2-3 mL) were added dropwise to the omeprazole solutions by syringe and evolution of a gas was observed. Additional drops of dimethyl magnesium were added to both flasks until the reactions were complete. Any particulate matter was removed by filtration through Whatman #4 paper filters and the supernatant tetrahydrofuran was removed by rotary evaporation producing a solid from each reaction. Each product was dissolved in methanol (10 mL) and placed in a nitrogen cabinet to attempt recrystallization. After approximately 12 hours, the sample solutions were a dark purple color. Attempts to purify the products on silica gel were unsuccessful.


EXAMPLE 5

Preparation of Magnesium S-Omeprazole and Magnesium R-Omeprazole from S-Omeprazole and R-Omeprazole and Methyl Magnesium Bromide by Grignard Reaction at Low Temperature.


Two clean, dry Schlenk flasks (100 mL) were immersed in a liquid nitrogen/acetone slurry. R-Omeprazole (500 mg, 1.448 mmol) separated from rac-omeprazole by means of SFC (see Example 11), was dissolved in a sufficient amount of deoxygenated toluene and transferred into one of the flasks. S-Omeprazole (500 mg, 1.448 mol), also separated by means of SFC (see Example 11) was dissolved in a sufficient amount of deoxygenated toluene and transferred into the other flask. A pressure equalizing dropping funnel containing toluene was inserted into each Schlenk flask. Methylmagnesium bromide (400 μL, 1.2 mmol, 3.0 M in diethyl ether) was added to each addition funnel via syringe. The methylmagnesium bromide solution was added dropwise into the contents of the Schlenk flasks kept at low temperature. Both solutions were stirred at low temperature for 20 minutes. The magnesium R-omeprazole solution was allowed to warm to room temperature and transferred carefully to a separatory funnel containing cold water. Attempts to dissipate the resulting emulsion using magnesium carbonate and aqueous ammonia were unsuccessful. The toluene fraction was separated, placed in a small round bottom flask and the toluene removed by rotary evaporation. The round bottom flask containing a white solid was placed in a nitrogen cabinet for two days. The cold contents of the magnesium S-omeprazole flask were added to a separatory funnel containing aqueous ammonia (80 mL, 15:1 water: concentrated ammonium hydroxide). The aqueous layer was separated and back extracted with toluene. The organic layer was placed in a 150 mL round bottom flask and set in a nitrogen cabinet. After two days the toluene was decanted from the white solid product. The resulting white solid from each reaction was characterized by means of X-ray powder diffraction (XRD). Based on these data, each product appeared mostly amorphous with a small degree of crystalline character.


EXAMPLE 6

Preparation of Magnesium S-Omeprazole and Magnesium R-Omeprazole from S-Omeprazole and R-Omeprazole and Magnesium Methoxide.


Magnesium methoxide (3 mL, 2.2 mmol, 7.8 wt % in methanol) was placed in two separate flasks containing R-omeprazole (500 mg, 1.448 mmol) and S-omeprazole (500 mg, 1.448 mmol), which were previously separated by means of SFC (see example 12). An additional portion of methanol (5 mL) was added to each flask and the flasks were placed in an ice bath and stirred for thirty minutes. The flasks were removed from the ice bath and allowed to stir under ambient conditions for approximately 18 hours. A small portion of water (0.02 mL) was added to each flask and the solutions stirred for an additional 30 minutes. Any solids were removed by filtration through 0.45 μm PTFE and the solvents removed by rotary evaporation. Acetone (18 mL) was added to each flask and the solutions stirred for 30 minutes after which the acetone was removed by rotary evaporation. The resulting solid products were characterized by means of X-ray powder diffraction with the results given in Tables 1 and 2. Relative peak intensity definitions are given below and are intended to apply to all references to powder X-ray diffraction data here and throughout this description.

TABLE 1Positions and intensities of the major peaks in the X-ray powderdiffraction of magnesium R-omeprazole as formed by theteachings in Example 6.% RelativeIntensityDefinition 25-100vs (very strong)10-25s (strong) 3-10m (medium)1-3w (weak)<1vw (very weak)









TABLE 2










Positions and intensities of the major peaks in the X-ray powder


diffraction of magnesium S-omeprazole as formed by the


teachings in Example 6.










d-value/Å
Relative Intensity














15.3
vs



10.5
s



8.2
s



5.0
s



4.8
vs



4.0
s



3.7
s



2.9
s



15.5
vs



10.6
m



8.4
s



5.1
vs



4.8
vs



3.4
s



2.9
s










EXAMPLE 7

Preparation of Magnesium R-Omeprazole from R-Omeprazole and Magnesium Ethoxide.


Magnesium ethoxide (85.003 mg, 0.7428 mmol) was combined with R-omeprazole (500 mg in 10 mL ethanol, 1.448 mmol) obtained from the chiral separation of rac-omeprazole (SFC; see Example 13) and methanol (50 mL). The solution was allowed to stir for approximately 48 hours. A small portion of water was added (0.5 mL) and the solution was allowed to stir for an additional hour. Any particulate matter was removed by filtration through 0.45 μm PTFE and the solvent removed by rotary evaporation. The flask was sealed and refrigerated for approximately 18 hours. Acetone (18 mL) was added and the solution allowed to stir for approximately two hours. The acetone was then removed by rotary evaporation. The resulting solid product was characterized by means of X-ray powder diffraction with the results given in Table 3.

TABLE 3Positions and intensities of the major peaks in the X-ray powderdiffraction of magnesium R-omeprazole as taught in Example 7.d-value/ÅRelative Intensity14.8vs12.2w10.8w8.4w7.6m6.7w5.5w5.1s4.8s4.3m4.1m3.8w3.5w2.9m


EXAMPLE 8

Preparation of Magnesium S-Omeprazole from S-Omeprazole and Magnesium Ethoxide.


Magnesium ethoxide (100.61 mg, 0.8792 mmol in 20 mL methanol) was combined with S-omeprazole (500 mg in 10 mL ethanol, 1.448 mmol) obtained from the chiral separation of rac-omeprazole (SFC; see Example 13). The solution was allowed to stir for approximately 18 hours. A small portion of water was added (0.1 mL) and the solution was allowed to stir for an additional two hours. Any particulate matter was removed by filtration through 0.45 μm PTFE and the solvent removed by rotary evaporation. Acetone (18 mL) was added and the solution allowed to stir for approximately one hour. The acetone was removed by rotary evaporation. The resulting solid product was characterized by means of X-ray powder diffraction.

TABLE 4Positions and intensities of the major peaks in the X-ray powderdiffraction of magnesium S-omeprazole as taught in Example 8.d-value/ÅRelative Intensity15.1vs12.5m10.8m10.0m8.5m7.8m5.1vs4.8vs4.3m4.1m3.8m3.4m2.9m


EXAMPLE 9

Preparation of Magnesium S-Omeprazole and Magnesium R-Omeprazole from S-Omeprazole and R-Omeprazole and Methyl Magnesium Bromide by Grignard Reaction.


Two clean, dry Schlenk flasks (100 mL) were immersed in a liquid nitrogen/acetone slurry. R-Omeprazole (500 mg; 1.448 mmol) and S-omeprazole (500 mg, 1.448 mmol) previously separated by means of SFC (Example 14) were placed in their respective flasks with an appropriate amount of toluene. Each flask was fitted with a dropping funnel containing deoxygenated toluene (10 mL) and methylmagnesium bromide (400 μL, 1.2 mmol, 3.0 Min diethyl ether). The solution was added dropwise to the omeprazole solutions and the flasks held at low temperature for an additional 30 minutes after complete addition of the Grignard solution. Both flasks were allowed to warm to room temperature and the contents of each flask transferred to individual separatory funnels containing an appropriate amount of water. The organic layer was removed and placed in a round bottom flask (200 mL). The aqueous layer was backwashed with toluene, separated and the organic layers combined into a round bottom flask. The solvent from the magnesium S-omeprazole flask was reduced by rotary evaporation (10 mL), the flask placed under refrigerated conditions for approximately 18 hours, then placed under a nitrogen purge to remove the solvent. The product was a dark purple oil. The magnesium R-omeprazole flask was placed directly under refrigerated conditions without removal of solvent for approximately 18 hours. The solvent was then removed by rotary evaporation resulting in a dark purple oil.


EXAMPLE 10

Preparation of R-Omeprazole and S-Omeprazole from rac-Omeprazole by means of Chiral Supercritical Fluid Chromatography.


Omeprazole (2517.6 mg; 7.289 mmol) was placed in a volumetric flask (100 mL) with 0.4% triethylamine (TEA) in methanol, dissolved by means of sonication, and brought to volume. The solution was injected onto a Berger Multigram Supercritical Fluid System under the following conditions:

    • Column: Chiralpak AS-H SFC
    • Column Dimensions: 20 mm×250 mm; 5 μm particle size
    • Column Temperature: 35° C.
    • Column Pressure: 100 bar
    • Detection: 302 nm
    • Flow rate: 50 mL/minute
    • Mobile Phase: 75:25 Carbon Dioxide: Methanol with 0.4% TEA
    • Injection Volume: 0.75 mL


The fractions of each enantiomer were collected into separate ice chilled flasks. After collection, the solvent was removed by rotary evaporation and the resulting oils were used directly in a subsequent experiment (see Example 4).


EXAMPLE 11

Preparation of R-Omeprazole and S-Omeprazole from rac-Omeprazole by means of Chiral Supercritical Fluid Chromatography.


Omeprazole (2589.3 mg; 7.496 mmol) was placed in a volumetric flask (100 mL) with 0.4% triethylamine (TEA) in methanol, dissolved by means of sonication, and brought to volume. The solution was injected onto a Berger Multigram Supercritical Fluid System under the following conditions:

    • Column: Chiralpak AS-H SFC
    • Column Dimensions: 20 mm×250 mm; 5 μm particle size
    • Column Temperature: 35° C.
    • Column Pressure: 100 bar
    • Detection: 302 nm
    • Flow rate: 50 mL/minute
    • Mobile Phase: 75:25 Carbon Dioxide: Methanol with 0.4% TEA
    • Injection Volume: 0.75 mL


The fractions of each enantiomer were collected into separate ice chilled flasks. After collection, the solvent was removed by rotary evaporation and the resulting oils were used directly in a subsequent experiment (see Example 5).


EXAMPLE 12

Preparation of R-Omeprazole and S-Omeprazole from rac-Omeprazole by means of Chiral Supercritical Fluid Chromatography.


Omeprazole (2552.4 mg; 7.389 mmol) was placed in a volumetric flask (100 mL) with 0.3% dimethylethylamine (DMEA) in methanol, dissolved by means of sonication, and brought to volume. The solution was injected onto a Berger Multigram Supercritical Fluid System under the following conditions:

    • Column: Chiralpak AS-H SFC
    • Column Dimensions: 20 mm×250 mm; 5 μm particle size
    • Column Temperature: 35° C.
    • Column Pressure: 100 bar
    • Detection: 302 nm
    • Flow rate: 50 mL/minute
    • Mobile Phase: 75:25 Carbon Dioxide: Methanol with 0.3% DMEA
    • Injection Volume: 0.75 mL


The fractions of each enantiomer were collected into separate ice chilled flasks. After collection, the solvent was removed by rotary evaporation. The resulting oils were used in a subsequent experiment (see Example 6).


EXAMPLE 13

Preparation of R-Omeprazole and S-Omeprazole from rac-Omeprazole by means of Chiral Supercritical Fluid Chromatography.


Omeprazole (2463.0 mg; 7.130 mmol) was placed in a volumetric flask (200 mL) with 0.3% dimethylethylamine (DMEA) in ethanol, dissolved by means of sonication, and brought to volume. The solution was injected onto a Berger Multigram Supercritical Fluid System under the following conditions:

    • Column: Chiralpak AS-H SFC
    • Column Dimensions: 20 mm×250 mm; 5 μm particle size
    • Column Temperature: 35° C.
    • Column Pressure: 150 bar
    • Detection: 302 nm
    • Flow rate: 50 mL/minute
    • Mobile Phase: 75:25 Carbon Dioxide: Ethanol with 0.3% DMEA
    • Injection Volume: 1.0 mL


The fractions of each enantiomer were collected into separate ice chilled flasks. After collection, the solvent was reduced by rotary evaporation to approximately 10 mL and the diluted products used in a subsequent experiment (see Examples 7 and 8).


EXAMPLE 14

Preparation of R-Omeprazole and S-Omeprazole from rac-Omeprazole by means of Chiral Supercritical Fluid Chromatography.


Omeprazole (2556.3 mg; 7.401 mmol) was placed in a volumetric flask (100 mL) with 0.3% dimethylethylamine (DMEA) in methanol, dissolved by means of sonication, and brought to volume. The solution was injected onto a Berger Multigram Supercritical Fluid System under the following conditions:

    • Column: Chiralpak AS-H SFC
    • Column Dimensions: 20 mm×250 mm; 5 μm particle size
    • Column Temperature: 35° C.
    • Column Pressure: 100 bar
    • Detection: 302 nm
    • Flow rate: 50 mL/minute
    • Mobile Phase: 75:25 Carbon Dioxide: Methanol with 0.3% DMEA
    • Injection Volume: 0.75 mL


The fractions of each enantiomer were collected into separate ice chilled flasks. After collection, the solvent was removed by rotary evaporation and the resulting oils used directly in a subsequent experiment (see Example 9).


EXAMPLE 15

Preparation of S-Omeprazole from rac-Omeprazole by means of Chiral High Performance Liquid Chromatography (HPLC).


Omeprazole (10.0373 g; 29.058 mmol) was placed in a volumetric flask (500 mL) with 0.1% diethylamine (DEA) in methanol, dissolved by means of sonication, and brought to volume. The solution was injected onto a Waters Delta Prep 4000 HPLC under the following conditions:

    • Column: Chiralpak AD
    • Column Dimensions: 20 mm×250 mm; 10 μm particle size
    • Detection: 280 nm
    • Flow rate: 10 mL/minute
    • Mobile Phase: 100% Methanol
    • Injection Volume: 10 mL


The fractions of the S-omeprazole enantiomer were collected into a flask containing sodium carbonate (10 g). After collection, the sodium carbonate was removed by filtration and the solvent removed by rotary evaporation. The resulting oil was used directly in subsequent experiments (see Examples 1 and 2).


EXAMPLE 16

Preparation of S-Omeprazole from rac-Omeprazole by means of Chiral High Performance Liquid Chromatography (HPLC).


Omeprazole (0.7307 g; 2.115 mmol) was dissolved in methanol (37 mL). The solution was injected onto a Waters Delta Prep 4000 HPLC under the following conditions:

    • Column: Chiralpak AD
    • Column Dimensions: 20 mm×250 mm; 10 μm particle size
    • Detection: 280 nm
    • Flow rate: 10 mL/minute
    • Mobile Phase: 100% Methanol
    • Injection Volume: 10 mL


The fractions of the S-omeprazole enantiomer were collected into a flask and the methanol removed by nitrogen purge to produce an oil. The oil was used directly in a subsequent experiment (see Example 3).


EXAMPLE 17

Recrystallization of Magnesium S-Omeprazole Trihydrate from Dimethylformamide


DMF (50 mL) was placed into a 600 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. DMF was added dropwise until the solution clarified. The resulting solution was placed in a crystallization dish and stored under refrigerated conditions for recrystallization. The resulting crystals were characterized by single crystal X-ray analysis, X-ray powder diffraction, Cross-Polarized Magic Angle Spinning solid-state 13C NMR spectroscopy (CPMAS), differential scanning calorimetry (melt is from 157.6-172.7° C. followed by degradation), and thermogravimetric analysis (5.36% weight loss from 27.6-115.2° C.). The X-ray crystal structure of magnesium S-omeprazole as determined from this recrystallization is shown in FIGS. 1A and 1B. The crystalline lattice also contained one uncoordinated DMF molecule. The X-ray powder pattern of the bulk material is substantiall the same as that for the computer generated X-ray powder pattern of the single crystal data, confirming that the single crystal was representative of the entire bulk sample. Peak positions and relative intensities for the X-ray powder diffraction are given in Tables 5a and 5b. Resonances for the 13C NMR are listed in Table 6. An ORTEP of the molecule is given in FIG. 1A, while an ORTEP of the Δ-[Mg(6-methoxy-5-omeprazolato)2(5-methoxy-5-omeprazolato)] anions is given in FIG. 1B. Selected bonds distances and angles are given in Tables 7a and 7b, respectively.

TABLE 5aPositions and intensities of the major peaks in the X-ray powderdiffraction of magnesium S-omeprazole as formed by theteachings in Example 17.d-value/ÅRelative Intensity15.1vs12.4m10.9m8.5w7.8m6.9m5.5m5.1s5.0s4.8s4.8w4.3m4.1m3.9w3.7w3.5w3.5m3.4m2.9m2.5w









TABLE 5b










Positions and intensities of the major peaks of the computer


generated X-ray powder diffractogram as calculated from


the single crystal data of magnesium S-omeprazole as


formed by the teachings in Example 17.











Relative



d-value/Å
Intensity














15.3
vs



12.5
s



11.0
s



8.5
s



7.8
s



6.9
s



5.5
s



5.1
s



5.1
vs



4.9
vs



4.9
vs



4.7
s



4.3
s



4.1
s



3.9
s



3.7
s



3.5
s



3.5
s



3.1
s



3.0
s

















TABLE 6










Positions of the peaks in the CPMAS spectrum of magnesium S-


omeprazole as formed by the teachings in Example 17.


shift (ppm)










166.6


165.9


164.6


162.6


158.5


157.4


155.5


150.2


148.7


143.9


142.5


138.8


129.8


128.7


127.7


118.4


115.9


112.0


110.4


99.3


97.0


62.5


60.0


59.1


55.1


53.6


35.3


30.9


11.7


11.0


9.6
















TABLE 7a










Selected Bond Distances for the Crystalline Product of Example 17.










Bond
Bond Distance (Å)







Mg1—O29
2.103(7)



Mg1—N21
2.156(9)



Mg1—N41
2.159(7)



S9—O9
1.516(7)



S9—C10
1.796(10)



S29—C22
1.792(11)



549—O49
1.518(6)



S49—C50
1.809(10)



O6—C8
1.418(17)



O14—C18
1.382(14)



O25—C28
1.493(19)



O34—C38
1.403(17)



O46—C46
1.376(12)



N1-C7A
1.378(10)



N3-C3A
1.402(13)



N11—C12
1.355(14)



N21-C27A
1.394(12)



N23-C23A
1.382(12)



N31—C32
1.384(13)



N41-C47A
1.394(11)



N43-C43A
1.383(11)



C3A-C7A
1.430(15)



C7A-C7
1.382(15)



C12—C13
1.389(14)



C13—C17
1.528(17)



C15—C16
1.381(16)



C23—C24
1.399(15)



C24—C25
1.360(14)



C25—C26
1.448(16)



Mg1—O49
2.150(6)



Mg1—O9
2.156(7)



Mg1—N1
2.164(9)



S9—C2
1.772(10)



S29—O29
1.518(7)



S29—C30
1.820(10)



S49—C42
1.801(9)



O6—C6
1.368(15)



O14—C14
1.357(12)



O25—C25
1.376(14)



O34—C34
1.412(13)



O46—C48
1.437(18)



N1—C2
1.338(13)



N3—C2
1.341(13)



N11—C16
1.348(14)



N21—C22
1.330(11)



N23—C22
1.326(13)



N31—C36
1.319(15)



N41—C42
1.336(11)



N43—C42
1.321(11)



C3A-C4
1.382(13)



C4—C5
1.378(17)



C5—C6
1.388(18)



C6—C7
1.363(13)



C10—C12
1.523(14)



C13—C14
1.389(15)



C14—C15
1.409(18)



C15—C19
1.561(17)



C23A-C27A
1.418(13)



C26—C27
1.375(16)



C32—C33
1.380(13)



C33—C37
1.528(15)



C35—C36
1.354(15)



C43A-C47A
1.409(13)



C44—C45
1.354(13)



C45—C46
1.427(15)



C46—C47
1.355(14)



C50—C52
 1.53(2)



N51—C52
1.356(16)



C56—C55
1.370(17)



O54—C54
1.438(19)



C53—C54
1.384(16)



C54—C55
1.344(19)



Mg2—O109
2.122(6)



Mg2—O69
2.153(7)



Mg2—N61
2.173(8)



S69—C62
1.800(10)



C27A-C27
1.401(13)



C30—C32
1.470(14)



C33—C34
1.375(15)



C34—C35
1.420(15)



C35—C39
1.509(15)



C43A-C44
1.413(13)



C47—C47A
1.405(13)



N51—C56
1.319(14)



C52—C53
1.351(16)



O54—C58
 1.51(5)



C53—C57
 1.55(3)



C55—C59
 1.52(2)



Mg2—O89
2.111(6)



Mg2—N81
2.137(7)



Mg2—N101
2.171(9)



S69—O69
1.512(7)



S69—C70
1.828(9)



S89—O89
1.517(6)



S89—C90
1.827(10)



S109—C102
1.762(11)



O66—C66
1.371(16)



O74—C74
1.405(11)



O86—C86
1.391(14)



O94—C98
1.403(17)



O114—C114
1.383(12)



N61—C62
1.337(13)



N63—C62
1.363(13)



N71—C76
1.308(14)



N81-C87A
1.357(10)



N83—C82
1.323(11)



N91—C92
1.336(14)



N101—C102
1.351(11)



N103—C102
1.351(13)



N111—C116
1.318(14)



C17A-C103
1.418(14)



C63A-C67A
1.392(14)



C64—C65
1.370(18)



C65—C66
 1.41(2)



C66—C67
1.349(15)



C70—C72
1.489(14)



C73—C74
1.395(15)



C74—C75
1.391(17)



C75—C79
1.516(16)



C83A-C87A
1.412(13)



C87A-C87
1.374(13)



C90—C92
1.510(13)



S89—C82
1.745(9)



S109—O109
1.534(7)



S109—C110
1.818(10)



O66—C68
 1.42(2)



O74—C78
1.408(15)



O86—C88
1.478(16)



O94—C94
1.357(13)



O106—C106
1.414(13)



O106—C108
 1.60(4)



O114—C118
1.396(13)



N61-C67A
1.403(11)



N63-C63A
1.401(13)



N71—C72
1.343(13)



N81—C82
1.376(11)



N83-C83A
1.429(13)



N91—C96
1.339(12)



N101-C17A
1.382(12)



N103—C103
1.389(12)



N111—C112
1.370(12)



C17A-C107
1.422(13)



C63A-C64
1.398(14)



C67A-C67
1.391(14)



C72—C73
1.369(13)



C73—C77
1.546(15)



C75—C76
1.378(14)



C83A-C84
1.366(13)



C84—C85
1.330(16)



C85—C86
1.392(17)



C86—C87
1.376(14)



C93—C94.
1.385(13)



C94—C95
1.403(17)



C95—C99
1.536(14)



C104—C105
1.384(15)



C105—C106
1.400(17)



C106—C107
1.359(16)



C110—C112
1.476(14)



C113—C114
1.357(15)



C114—C115
1.422(15)



C115—C119
1.524(16)



Mg3—O406
2.035(7)



Mg3—O402
2.077(6)



Mg3—O404
2.102(6)



N401—C402
1.380(18)



C92—C93
1.410(15)



C93—C97
1.530(16)



C95—C96
1.377(16)



C103—C104
1.392(16)



C112—C113
1.401(14)



C113—C117
1.531(14)



C115—C116
1.377(15)



Mg3—O401
2.020(9)



Mg3—O405
2.069(8)



Mg3—O403
2.100(7)



O401—C401
1.250(18)



N401—C401
1.353(18)



N401—C403
1.385(18)



O503—C503
1.159(18)



N501—C503
 1.37(2)



N501—C502
 1.37(2)



N501—C501
 1.46(2)

















TABLE 7b










Selected Bond Angles for the Crystalline Product of Example 17.










Bond Angle
Angle (deg)







O29—Mg1—O49
 91.4(3)



O49—Mg1—N21
 92.6(3)



O49—Mg1—O9
 87.8(3)



O29—Mg1—N41
170.2(3)



N21—Mg1—N41
 95.5(3)



O29—Mg1—N1
 93.1(3)



N21—Mg1—N1
100.9(3)



N41—Mg1—N1
 96.7(3)



O9—S9—C10
105.9(4)



O29—S29—C22
103.6(4)



C22—S29—C30
 94.9(5)



O49—S49—C50
105.4(4)



C6—O6—C8
116.8(10)



C14—O14—C18
117.0(9)



S29—O29—Mg1
120.3(4)



C46—O46—C48
116.6(10)



C2-N1-C7A
103.2(8)



C7A-N1-Mg1
138.3(8)



C16—N11—C12
117.7(10)



C22—N21—Mg1
116.9(7)



C22-N23-C23A
102.2(8)



C42-N41-C47A
100.1(8)



C47A-N41-Mg1
140.0(6)



N1—C2—N3
119.5(9)



N3—C2—S9
122.3(11)



C4-C3A-C7A
118.6(9)



C5-C4-C3A
117.8(11)



C7—C6—O6
126.0(12)



O6—C6—C5
114.9(11)



N1-C7A-C3A
107.0(9)



C6-C7-C7A
119.1(11)



O29—Mg1—N21
 81.4(3)



O29—Mg1—O9
 91.3(3)



N21—Mg1—O9
172.8(3)



O49—Mg1—N41
 79.4(3)



O9—Mg1—N41
 91.7(3)



O49—Mg1—N1
166.2(4)



O9—Mg1—N1
 79.0(3)



O9—S9—C2
102.6(6)



C2—S9—C10
 97.6(4)



O29—S29—C30
107.0(5)



O49—S49—C42
103.9(4)



C42—S49—C50
 99.1(5)



S9—O9—Mg1
121.7(3)



C25—O25—C28
117.0(12)



C38—O34—C34
113.7(11)



S49—O49—Mg1
120.4(3)



C2—N1—Mg1
118.5(6)



C2-N3-C3A
100.1(10)



C22-N21-C27A
101.9(8)



C27—N21—Mg1
139.6(6)



C36—N31—C32
117.3(10)



C42—N41—Mg1
119.7(6)



C42-N43-C43A
101.3(7)



N1—C2—S9
118.1(8)



C4-C3A-N3
131.3(11)



N3-C3A-C7A
110.0(8)



C4—C5—C6
123.7(11)



C7—C6—C5
119.1(11)



N1—C7A—C7
131.3(11)



C7-C7A-C3A
121.6(9)



N11—C12—C10
114.6(9)



C12—C13—C14
116.9(12)



C14—C13—C17
118.8(11)



O14—C14—C15
117.6(11)



C16—C15—C14
119.7(11)



C14—C15—C19
123.1(12)



N23—C22—N21
119.2(9)



N21—C22—S29
117.3(9)



N23-C23A-C27A
108.7(9)



C25-C24-C23A
119.0(11)



C24—C25—C26
120.5(12)



C27—C26—C25
120.2(11)



N21-C27A-C23A
108.0(8)



C26-C27-C27A
119.6(11)



C33—C32—C30
125.4(10)



C34—C33—C32
117.9(9)



C32—C33—C37
120.7(10)



C33—C34—C35
123.1(10)



C36—C35—C34
112.6(10)



C34—C35—C39
122.6(12)



N11—C12—C13
124.7(9)



C13—C12—C10
120.6(12)



C12—C13—C17
123.9(10)



O14—C14—C13
122.8(14)



C13—C14—C15
119.2(11)



C16—C15—C19
117.2(16)



N11—C16—C15
121.8(14)



N23—C22—S29
123.4(7)



N23-C23A-C24
129.8(10)



C24-C23A-C27A
121.5(10)



C24—C25—O25
127.3(12)



O25—C25—C26
112.2(11)



N21-C27A-C27
132.9(10)



C27-C27A-C23A
119.1(10)



C32—C30—S29
110.2(8)



C33—C32—N31
120.8(9)



N31—C32—C30
113.9(10)



C34—C33—C37
121.4(10)



C33—C34—O34
120.1(10)



O34—C34—C35
116.7(10)



C36—C35—C39
124.7(11)



N31—C36—C35
128.2(11)



N43—C42—N41
120.7(8)



N41—C42—S49
115.5(7)



N43-C43A-C44
132.3(8)



C45-C44-C43A
118.4(9)



C47—C46—O46
124.9(11)



O46—C46—C45
113.4(10)



N41-C47A-C47
128.4(9)



C47-C47A-C43A
122.4(9)



C52—C50—S49
104.3(9)



C56—N51—C52
117.3(19)



C53—C52—C50
122.1(17)



N51—C56—C55
124.4(17)



C52—C53—C54
118.9(18)



C54—C53—C57
119.8(17)



C55—C54—O54
117.6(14)



C54—C55—C56
117.4(14)



C56—C55—C59
118.4(15)



N43—C42—S49
123.7(7)



N43-C43A-C47A
108.7(8)



C47A-C43A-C44
119.0(9)



C44—C45—C46
121.6(9)



C47—C46—C45
121.5(1)



C46-C47-C47A
117.0(9)



N41-C47A-C43A
109.2(8)



C53—C52—N51
  122(2)



N51—C52—C50
116.1(1)



C54—O54—C58
  106(3)



C52—C53—C57
121.3(1)



C55—C54—C53
120.3(1)



C53—C54—O54
121.5(1)



C54—C55—C59
124.2(1)



O89—Mg2—O109
 92.9(2)



O109—Mg2—N81
174.3(3)



O109—Mg2—O69
 88.9(3)



O89—Mg2—N101
 92.5(3)



N81—Mg2—N101
 97.2(3)



O89—Mg2—N61
169.9(3)



N81—Mg2—N61
 95.6(3)



N101—Mg2—N61
 97.5(3)



O69—S69—C70
105.4(4)



O89—S89—C82
103.3(4)



C82—S89—C90
 97.8(4)



O109—S109—C110
105.0(4)



C66—O66—C68
118.8(12)



C74—O74—C78
115.1(10)



S89—O89—Mg2
120.4(3)



S109—O109—Mg2
119.7(4)



C62-N61-C67A
101.7(8)



C67A-N61-Mg2
139.4(8)



C76—N71—C72
118.6(9)



C87A-N81-Mg2
141.6(6)



C82-N83-C83A
102.5(8)



C102-N101-C17-A
101.3(8)



O89—Mg2—N81
 81.8(3)



O89—Mg2—O69
 91.1(3)



N81—Mg2—O69
 93.4(3)



O109—Mg2—N101
 80.8(3)



O69—Mg2—N101
169.2(3)



O109—Mg2—N61
 90.0(3)



O69—Mg2—N61
 79.2(3)



O69—S69—C62
102.7(5)



C62—S69—C70
100.0(4)



O89—S89—C90
106.9(5)



O109—S109—C102
104.8(4)



C102—S109—C110
100.2(5)



S69—O69—Mg2
122.0(3)



C86—O86—C88
117.8(9)



C94—O94—C98
115.0(9)



C106—O106—C108
111.6(15)



C114—O114—C118
117.1(9)



C62—N61—Mg2
118.8(6)



C62-N63-C63A
 97.7(9)



C87A-N81-C82
103.2(6)



C82—N81—Mg2
115.0(5)



C92—N91—C96
114.2(9)



C102—N101—Mg2
117.6(7)



C17A-N101-Mg2
141.0(6)



C116—N111—C112
117.3(9)



N101-C17A-C107
128.2(9)



N61—C62—N63
120.8(9)



N63—C62—S69
121.8(10)



C67A-C63A-N63
112.9(9)



C65-C64-C63A
117.0(13)



C67—C66—066
124.4(15)



O66—C66—C65
116.2(12)



C67-C67A—N61
130.4(11)



C66-C67-C67A
118.4(12)



N71—C72—C70
115.3(9)



C72—C73—C74
117.0(10)



C74—C73—C77
120.8(9)



C75—C74—074
117.9(10)



C76—C75—C74
113.1(10)



C74—C75—C79
124.2(10)



N83—C82—N81
117.0(8)



N81—C82—S89
119.3(6)



C84—C83A—N83
132.1(10)



C85-C84-C83A
118.9(11)



C102—N103—C103
102.0(7)



N101—C17A—C103
109.9(8)



C103—C17A—C107
121.6(10)



N61—C62—S69
117.2(8)



C67A—C63A—C64
119.3(11)



C64—C63A—N63
127.9(13)



C64—C65—C66
123.4(12)



C67—C66—C65
119.3(13)



C67-C67A-C63A
122.6(9)



C63A-C67A-N61
107.0(10)



C72—C70—S69
108.3(7)



N71—C72—C73
121.8(9)



C73—C72—C70
122.9(10)



C72—C73—C77
122.2(10)



C75—C74—C73
122.8(9)



C73—C74—O74
119.0(11)



C76—C75—C79
122.7(12)



N71—C76—C75
126.6(11)



N83—C82—S89
123.7(8)



C84-C83A-C87A
120.2(10)



C87A-C83A-N83
107.5(8)



C84—C85—C86
122.4(10)



C87—C86—O86
122.7(12)



O86—C86—C85
117.2(10)



N81-C87A-C83A
109.7(8)



C87A-C87-C86
118.1(10)



N91—C92—C90
112.4(10)



C94—C93—C92
116.7(10)



C92—C93—C97
123.5(10)



O94—C94—C95
119.6(10)



C96—C95—C94
116.4(10)



C94—C95—C99
122.5(11)



N101—C102—N103
118.5(9)



N103—C102—S109
124.6(7)



N103-C103-C17A
108.2(9)



C105—C104—C103
118.9(11)



C107—C106—C105
124.4(11)



C105—C106—O106
111.8(13)



C112—C110—S109
107.5(8)



C87—C86—C85
120.1(10)



N81-C87A-C87
129.9(9)



C87-C87A-C83A
120.3(9)



C92—C90—S89
109.5(6)



N91—C92—C93
125.6(9)



C93—C92—C90
122.0(11)



C94—C93—C97
119.7(11)



O94—C94—C93
120.2(12)



C93—C94—C95
119.9(10)



C96—C95—C99
121.1(13)



N91—C96—C95
127.0(11)



N101—C102—S109
116.9(8)



N103—C103—C104
132.0(10)



C104—C103—C17A
119.8(10)



C104—C105—C106
119.7(12)



C107—C106—O106
123.8(12)



C106—C107—C17A
115.5(10)



N111—C112—C113
121.4(9)



C113—C112—C110
124.7(9)



C114—C113—C117
120.2(10)



C113—C114—O114
121.5(10)



O114—C114—C115
116.1(11)



C116—C115—C119
123.4(11)



N111—C116—C115
126.8(10)



O401—Mg3—O405
 94.3(4)



O401—Mg3—O402
 85.6(3)



O405—Mg3—O402
 89.2(3)



O406—Mg3—O403
 86.5(3)



O402—Mg3—O403
 95.4(3)



O406—Mg3—O404
 92.1(3)



O402—Mg3—O404
175.8(4)



C401—O401—Mg3
174.4(11)



C401—N401—C403
122.7(17)



N111—C112—C110
113.5(9)



C114—C113—C112
118.2(9)



C112—C113—C117
121.6(10)



C113—C114—C115
121.9(10)



C116—C115—C114
114.2(10)



C114—C115—C119
122.4(11)



O401—Mg3—O406
174.2(4)



O406—Mg3—O405
 90.5(3)



O406—Mg3—O402
 91.2(3)



O401—Mg3—O403
 89.0(4)



O405—Mg3—O403
174.5(3)



O401—Mg3—O404
 91.3(3)



O405—Mg3—O404
 88.2(3)



O403—Mg3—O404
 87.4(3)



C401—N401—C402
  125(3)



C402—N401—C403
  112(3)



C503—N501—C502
116.7(16)



C503—N501—C501
118.6(19)



C502—N501—C501
124.5(19)



O503—C503—N501
125.8(19)










EXAMPLE 18

Recrystallization of Magnesium S-Omeprazole Trihydrate from Dimethylformamide


DMF (30 mL) was placed into a 100 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. DMF was added dropwise until the solution clarified. The resulting solution was placed in a crystallization dish and stored in a cabinet for recrystallization. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (melt from 163.7-174.5° C., followed by degradation), and thermogravimetric analysis (6.27% weight loss from 26.3-116.4° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 8.

TABLE 8Positions and intensities of the major peaks in the X-ray powderdiffraction of magnesium S-omeprazole as formed by theteachings in Example 18.d-value/ÅRelative Intensity15.1vs12.3m10.9m8.5m7.8m6.9m5.5m5.1s5.0s4.9vs4.7m4.3m4.1m3.9m3.7m3.5m3.4m3.4m2.9m2.5w


EXAMPLE 19

Recrystallization of Magnesium S-Omeprazole Trihydrate from Dimethylformamide


DMF (30 mL) was placed into a 100 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. DMF was added dropwise until the solution clarified. The resulting solution was placed in a crystallization dish and stored in a cabinet for recrystallization. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (melt from 162.2-175.3° C. followed by degradation), and thermogravimetric analysis (3.75% weight loss from 23.0-116.3° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 9.

TABLE 9Positions and intensities of the major peaks in the X-ray powderdiffraction of magnesium S-omeprazole as formed by the teachingsin Example 19.Relatived-value/ÅIntensity14.9vs12.2m10.8m8.4m7.7m6.8m5.5m5.1s5.0s4.8vs4.6m4.4m4.3m4.1s4.0m3.9m3.8w3.7m3.5m3.4m2.9m2.5m


EXAMPLE 20

Recrystallization of Magnesium S-Omeprazole Dihydrate from Dimethylformamide


Dimethylformamide (DMF) (15 mL) was placed in a 150 mL beaker. Magnesium S-omeprazole was added with stirring until the solution was slightly cloudy. Additional DMF was added dropwise until the solution clarified. The resulting solution was placed in a petrie dish and stored under refrigerated conditions to recrystallize. The crystalline material obtained was characterized by X-ray powder diffraction, thermogravimetric analysis (4.95% weight loss from 27.4-115.5° C.) and differential scanning calorimetry (melt from 161.2-170.9° C. followed by degradation). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 10.

TABLE 10Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formed by theteachings in Example 20.Relatived-value/ÅIntensity14.9vs12.2m10.8m8.4m7.7m6.8m5.5s5.1s5.0s4.8vs4.6m4.4w4.2m4.1s3.9m3.8w3.7m3.5m3.4s2.9m2.5w


EXAMPLE 21

Recrystallization of Magnesium S-Omeprazole Trihydrate from Methanol


Methanol (300 mL) was placed in a 600 mL beaker. Magnesium S-omeprazole was slowly added to the solution with stirring until the solution remained slightly cloudy. Methanol was added dropwise until the solution clarified. The resulting solution was placed in a crystallization dish and stored under refrigeration for recrystallization. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (no endotherm detected, sample degrades after approximately 175° C.), and thermogravimetric analysis (7.93% weight loss from 24.6-115.3° C.). The resulting powder pattern for this material indicated that it was amorphous with no crystalline character.


EXAMPLE 22

Recrystallization of Magnesium S-Omeprazole Trihydrate from Methanol using an Acetone Chamber


Methanol (200 mL) was placed into a 400 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. Methanol was the added dropwise until the solution clarified. Approximately 3 mL of water was added to the solution. Half of the methanolic magnesium S-omeprazole solution was placed into an open petrie dish. This dish was then placed inside of a larger petrie dish. Acetone was added to the outside petrie dish creating an acetone chamber for vapor diffusion recrystallization. The larger petrie dish was then covered and placed in a cabinet at room temperature to recrystallize. The level of acetone was periodically checked and replenished as needed during the recrystallization process. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (broad endotherm from 57.8-91.3° C., sample degrades after approximately 175° C.), and thermogravimetric analysis (8.90% weight loss from 24.4-115.1° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 11.

TABLE 11Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formed bythe teachings in Example 22.Relativevalue/ÅIntensity19.0vs12.0m10.6vs9.2m7.3vs6.0m5.8m4.8vs4.4s4.1s3.5m3.3m2.9m2.8m


EXAMPLE 23

Recrystallization of Magnesium S-Omeprazole Trihydrate from a Methanol/Acetone Solution


Methanol (200 mL) was placed into a 400 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. Methanol was added dropwise until the solution clarified. Approximately 3 mL of water was added to the solution. Twenty-five mL of the methanolic magnesium S-omeprazole solution was placed into clean 150 mL beaker. Approximately 20 mL acetone was added and the solution was placed in a cabinet at room temperature to recrystallize. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (minor endotherm from 58.5-83.5° C., sample degrades after approximately 175° C.), and thermogravimetric analysis (8.61% weight loss from 25.2-115.3° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 12.

TABLE 12Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formedby the teachings in Example 23.d-value/ÅRelative Intensity18.6vs12.0s10.5vs7.8vs4.8vs4.8vs4.3s3.5s


EXAMPLE 24

Recrystallization of Magnesium S-Omeprazole Trihydrate from a Methanol/Acetone Solution


Magnesium S-omeprazole (7.6 g, 11 mmol) was placed in a 100 mL beaker. Methanol (ca. 10 mL) was added with stirring. An additional 10 mL aliquot of methanol was added and the resulting solution was allowed to evaporate back down to approximately 10 mL. Acetone (25 mL) was added with stirring. The resulting solution was covered with a watchglass and allowed to stand for about one hour after which a white solid had precipitated. The solution was decanted from the solid material, which was dried. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (minor endotherm from 99.9-118.6° C., sample degrades after approximately 175° C.), and thermogravimetric analysis (6.23% weight loss from 22.2-115.1° C.). The X-ray powder pattern for the recrystallized sample is substantially the same as that for the crystal grown from DMF in Example 17. Peak positions and relative intensities for the X-ray powder diffraction are given in Table 13.

TABLE 13Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formed by theteachings in Example 24.Relatived-value/ÅIntensity14.8vs12.1s10.7m8.4s7.8m6.7m5.7m5.4s5.0vs4.8vs4.7vs4.6s4.4m4.3s4.1s4.0w3.8w3.6m3.4m2.9m2.9m2.5w


EXAMPLE 25

Recrystallization of Magnesium S-Omeprazole Trihydrate from a Methanol/Acetone Solution


Magnesium S-omeprazole (14.5 g, 20.4 mmol) was placed in a 250 mL beaker. Methanol (ca. 40 mL) was added with stirring. The resulting solution was allowed to evaporate to approximately 20 mL. Acetone (50 mL) was added with stirring. The resulting solution was covered and allowed to stand overnight after which a white solid had precipitated. The solution was decanted from the solid material, which was dried. The resulting crystals were characterized by X-ray powder diffraction, CPMAS, differential scanning calorimetry (minor, broad endotherm from 112.7-150.4° C., sample degrades after approximately 175° C.), and thermogravimetric analysis (4.50% weight loss from 30.2-115.3° C.). The X-ray powder pattern for the recrystallized sample is substantially the same as that for the crystal grown from DMF in Example 17. Peak positions and relative intensities for the X-ray powder diffraction are given in Table 14. Resonances for the 13C NMR are listed in Table 15.

TABLE 14Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formed bythe teachings in Example 25.d-value/ÅRelative Intensity14.8vs12.2s10.7m8.4s7.7m7.3m6.7m5.7m5.5s5.3m5.0vs4.8vs4.7s4.6s4.4m4.3s4.1s4.0m3.8w3.7m3.4m2.9m2.9m2.5w









TABLE 15








Positions of the peaks in the CPMAS spectrum of magnesium


S-omeprazole as formed by the teachings in Example 25.


shift (ppm)















167.1


166.6


164.5


156.8


155.9


149.2


144.0


141.6


138.8


129.9


128.7


127.2


118.6


117.5


116.0


112.3


111.4


97.8


96.4


62.5


59.4


56.0


54.6


53.1


30.1


13.2


11.8


10.0









EXAMPLE 26

Recrystallization of Magnesium S-Omeprazole Trihydrate from a Methanol/Acetone/Water Solution


Methanol (20 mL) was placed into a 50 mL beaker. Magnesium S-omeprazole (8.6 g, 12 mmol) was added with stirring resulting in a very thick, slightly opaque solution. This was placed in a cabinet to evaporate down to approximately 7 mL. Water (5 mL) and acetone (30 mL) were mixed together and the methanolic solution of magnesium S-omeprazole solution was added to this solution with stirring. The resulting solution was allowed to stand for one hour, after which a solid material had precipitated from the solution. The solid material was filtered off and dried in a vacuum oven set at 40.0° C. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (minor endotherm from 59.1-72.5° C., minor endotherm from 151.3-175.7° C. followed by degradation), and thermogravimetric analysis (4.68% weight loss from 36.3-114.8° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Tables 16 and 17.

TABLE 16Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formed bythe teachings in Example 26 before drying.d-value/ÅRelative Intensity17.3vs11.7m10.3s7.2vs6.3s4.8vs4.2s3.5s3.1m









TABLE 17










Positions and intensities of the major peaks in the X-ray


powder diffraction of magnesium S-omeprazole as formed by


the teachings in Example 26 after drying.








d-value/Å
Relative Intensity











15.0
vs


12.2
m


7.7
w


7.1
w


6.5
vs


6.1
vs


5.8
s


5.2
vs


5.2
s


4.7
vs


4.5
s


4.3
m


4.2
vs


4.0
s


3.8
m


3.5
m


3.4
m


3.3
m


3.2
s


3.0
s


2.9
m


2.7
w


2.6
m


2.5
w


2.4
m


2.3
m









EXAMPLE 27

Recrystallization of Magnesium S-Omeprazole Trihydrate from an Ethanol/Acetone Solution


Magnesium S-omeprazole (7.6 g, 11 mmol) was placed in a 600 mL beaker. Absolute ethanol (ca. 200 mL) was added with stirring. The resulting solution was allowed to evaporate back down to approximately 100 mL. Acetone (100 mL) was added with stirring. The resulting solution was covered and allowed to stand overnight after which a white solid had precipitated. The solution was decanted from the solid material, which was dried. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry, no endotherm detected, sample degrades after approximately 175° C.), and thermogravimetric analysis (6.16% weight loss from 27.2-115.3° C.). The X-ray powder pattern for the recrystallized sample is substantially the same as that for the crystal grown from DMF in Example 17. Peak positions and relative intensities for the X-ray powder diffraction are given in Table 18.

TABLE 18Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formedby the teachings in Example 27.Relatived-value/ÅIntensity14.7vs12.2s10.6s8.5s7.8s7.3m6.7m5.7m5.4m5.3m5.1vs4.8vs4.7s4.6s4.4m4.3s4.1s4.0m3.8s3.7m3.4m2.9m2.9m2.5m


EXAMPLE 28

Recrystallization of Magnesium S-Omeprazole Trihydrate from an Ethanol/Acetone Solution


Absolute ethanol (200 mL) was placed into a 400 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. Absolute ethanol was added dropwise until the solution clarified. Twenty-five mL of the ethanolic magnesium S-omeprazole solution was placed into a clean 150 mL beaker. Approximately 20 mL acetone was added and the solution was placed in a cabinet at room temperature to recrystallize. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (no endotherm detected, sample degrades after approximately 175° C.), and thermogravimetric analysis (7.83% from 26.5-115.1° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 19.

TABLE 19Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formedby the teachings in Example 28d-value/ÅRelative Intensity15.0vs12.3s10.9s8.4s7.8m5.4s5.0vs4.8vs4.7vs4.1s3.4s2.9s


EXAMPLE 29

Recrystallization of Magnesium S-Omeprazole Trihydrate from Ethanol using an Acetone Chamber


Absolute ethanol (200 mL) was placed into a 400 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. Absolute ethanol was added dropwise until the solution clarified. One half of the ethanolic magnesium S-omeprazole solution was placed into an open petrie dish. This dish was then placed inside of a larger petrie dish. Acetone was added to the outside petrie dish creating an acetone chamber for vapor diffusion recrystallization. The larger petrie dish was then covered and placed in a cabinet at room temperature to recrystallize. The level of acetone was periodically checked and replenished as needed during the recrystallization process. The resulting crystals were characterized by X-ray powder diffraction, CPMAS, differential scanning calorimetry (no endotherm detected, sample degrades after approximately 175° C.), and thermogravimetric analysis (9.92% from 22.3-115.3° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 20. Resonances for the 13C NMR are listed in Table 21.

TABLE 20Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formedby the teachings in Example 29d-value/ÅRelative Intensity17.0vs11.9m10.2s7.2m6.3m5.3s4.8vs4.2m4.0s3.5m3.2m2.7m









TABLE 21








Positions of the peaks in the CPMAS spectrum of magnesium


S-omeprazole as formed by the teachings in Example 29.


shift (ppm)















164.0


154.6


149.8


146.6


142.6


140.2


136.8


126.3


116.2


111.5


95.9


58.1


52.5


10.5


7.8









EXAMPLE 30

Recrystallization of Magnesium S-Omeprazole Trihydrate from Ethanol using an Acetone Chamber


Absolute ethanol (175 mL) was placed into a 400 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. Absolute ethanol was added dropwise until the solution clarified. The ethanolic magnesium S-omeprazole solution was placed into an open petrie dish (100 mm diameter). This dish was then placed inside of a larger petrie dish (150 mm diameter). Acetone was added to the outside petrie dish creating an acetone chamber for vapor diffusion recrystallization. The larger petrie dish was then covered and placed in a cabinet at room temperature to recrystallize. The level of acetone was periodically checked and replenished as needed during the recrystallization process. The resulting crystals were characterized by X-ray powder diffraction, differential scanning calorimetry (minor, broad endotherm from 57.1-76.7° C., sample degrades after approximately 175° C.), and thermogravimetric analysis (11.29% from 28.5-115.2° C.). Peak positions and relative intensities for the X-ray powder diffraction are given in Table 22.

TABLE 22Positions and intensities of the major peaks in the X-raypowder diffraction of magnesium S-omeprazole as formedby the teachings in Example 30d-value/ÅRelative Intensity19.4vs12.1m10.7vs9.2s7.3vs6.1s5.8s5.4s5.0vs4.8vs4.7s4.5s4.1s3.9s3.5s3.3s3.2m3.1m2.7m


EXAMPLE 31

Recrystallization of Magnesium S-Omeprazole Trihydrate from Dimethylsulfoxide


Dimethylsulfoxide (DMSO) (15 mL) was placed into a 25 mL beaker. Magnesium S-omeprazole was added with stirring until the solution remained slightly cloudy. DMSO was added dropwise until the solution clarified. The resulting solution was placed in a petrie dish and stored at room temperature for recrystallization. The resulting crystals were characterized using single crystal X-ray analysis. The X-ray crystal structure of magnesium S-omeprazole as determined from this recrystallization is shown in FIGS. 2A and 2B. The crystalline lattice also contained three uncoordinated water molecules, of which two were partially occupied. A powder pattern was generated from the single crystal data and the results are tabulated in Table 23a. Selected bond distances and angles are given in Tables 23b and 23c, respectively.

TABLE 23aPositions and intensities of the major peaks in the computergenerated X-ray powder diffraction pattern of magnesiumS-omeprazole as formed by the teachings in Example 31.d-value/ÅRelative Intensity13.7vs9.4s8.7s8.0s7.2s6.2s5.8vs5.2vs5.0vs5.0vs4.9vs4.6vs4.6s4.5s4.4s4.3s4.1s4.0vs3.9s3.9vs3.7vs3.6vs3.5vs3.4s3.3s3.1s3.0s









TABLE 23b










Bond Distances for the Crystalline Product of Example 31.










Bond
Bond Distance (Å)







N11—C21
1.350(5)



N11—C81
1.379(4)



N11—Mg(1)
2.154(4)



C21—N31
1.326(4)



C21—S11
1.786(3)



N31—C91
1.381(5)



C41—C51
1.357(5)



C41—C91
1.426(5)



C51—C61
1.409(5)



C61—C71
1.365(5)



C61—O21
1.397(5)



C71—C81
1.391(5)



C81—C91
1.402(5)



C101—C111
1.499(5)



C101—S11
1.808(4)



C111—N121
1.350(5)



C111—C161
1.376(5)



N121—C131
1.316(5)



C131—C141
1.392(5)



C141—C151
1.398(5)



C141—C181
1.517(6)



C151—O31
1.362(5)



C151—C161
1.402(5)



C161—C201
1.505(5)



C171—O21
1.414(6)



C191—O31
1.371(6)



O11—S11
1.509(3)



O11—Mg(1)
2.089(4)



N12—C22
1.350(5)



N12—C82
1.381(4)



N12—Mg(1)
2.170(4)



C22—N32
1.321(4)



C22—S12
1.779(4)



N32—C92
1.381(5)



C42—C52
1.360(5)



C42—C92
1.419(5)



C52—C62
1.393(5)



C62—C72
1.370(5)



C62—O22
1.394(5)



C72—C82
1.389(5)



C82—C92
1.402(5)



C102—C112
1.495(5)



C102—S12
1.812(4)



C112—N122
1.354(5)



C112—C162
1.386(5)



N122—C132
1.319(5)



C132—C142
1.387(5)



C142—C152
1.402(5)



C142—C182
1.523(5)



C152—O32
1.379(5)



C152—C162
1.388(5)



C162—C202
1.512(5)



C172—O22
1.431(6)



C192—O32
1.419(5)



O12—S12
1.512(3)



O12—Mg(1)
2.132(4)



N13—C23
1.345(4)



N13—C83
1.383(4)



N13—Mg(1)
2.139(4)



C23—N33
1.327(4)



C23—S13
1.794(3)



N33—C93
1.388(4)



C43—C53
1.373(5)



C43—C93
1.424(5)



C53—C63
1.394(5)



C63—C73
1.366(5)



C63—O23
1.400(5)



C73—C83
1.391(4)



C83—C93
1.395(5)



C103—C113
1.496(4)



C103—S13
1.824(4)



C113—N123
1.348(4)



C113—C163
1.390(4)



N123—C133
1.312(5)



C133—C143
1.378(5)



C143—C153
1.412(5)



C143—C183
1.511(5)



C153—O33
1.374(5)



C153—C163
1.390(4)



C163—C203
1.505(5)



C173—O23
1.418(6)



C193—O33
1.401(5)



O13—S13
1.513(3)



O13—Mg(1)
2.147(4)



N14—C24
1.347(5)



N14—C84
1.380(4)



N14—Mg(2)
2.160(4)



C24—N34
1.323(4)



C24—S14
1.783(3)



N34—C94
1.383(4)



C44—C54
1.366(5)



C44—C94
1.422(5)



C54—C64
1.394(5)



C64—C74
1.367(5)



C64—O24
1.397(5)



C74—C84
1.390(5)



C84—C94
1.400(5)



C104—C114
1.499(4)



C104—S14
1.808(4)



C114—N124
1.345(5)



C114—C164
1.391(5)



N124—C734
1.320(5)



C734—C144
1.385(5)



C144—C154
1.405(5)



C144—C184
1.515(5)



C154—O34
1.379(4)



C154—C164
1.384(4)



C164—C204
1.504(5)



C174—O24
1.423(6)



C194—O34
1.408(5)



O14—S14
1.513(3)



O14—Mg(2)
2.157(4)



N15—C25
1.343(4)



N15—C25
1.382(4)



N15—Mg(2)
2.148(4)



C25—N35
1.327(5)



C25—S15
1.781(4)



N35—C95
1.381(5)



C45—C55
1.361(5)



C45—C95
1.420(5)



C55—C65
1.404(5)



C65—C75
1.365(5)



C65—O25
1.399(5)



C75—C85
1.393(5)



C85—C95
1.400(5)



C105—C115
1.505(5)



C105—S15
1.820(4)



C115—N125
1.351(5)



C115—C165
1.385(4)



N125—C135
1.315(5)



C135—C145
1.386(5)



C145—C155
1.404(5)



C145—C185
1.514(5)



C155—O35
1.379(4)



C155—C165
1.389(4)



C165—C205
1.506(5)



C175—O25
1.421(6)



C195—O35
1.421(5)



O15—S15
1.520(3)



O15—Mg(2)
2.104(4)



N16—C26
1.338(5)



N16—C86
1.386(4)



N16—Mg(2)
2.137(4)



C26—N36
1.332(4)



C26—S16
1.791(4)



N36—C96
1.384(5)



C46—C56
1.365(5)



C46—C96
1.420(5)



C56—C66
1.397(5)



C66—C76
1.363(5)



C66—O26
1.403(5)



C76—C86
1.391(5)



C86—C96
1.402(5)



C106—C116
1.490(5)



C106—S16
1.808(4)



C116—N126
1.351(5)



C116—C166
1.395(5)



N126—C136
1.327(5)



C136—C146
1.389(5)



C146—C156
1.409(5)



C146—C186
1.519(5)



C156—O36
1.377(4)



C156—C166
1.391(5)



C166—C206
1.507(5)



C176—O26
1.421(6)



C196—O36
1.412(6)



O16—S16
1.506(3)



O16—Mg(2)
2.107(4)



Mg(3)—O(5)
2.051(5)



Mg(3)—O(6)
2.058(6)



Mg(3)—O(8)
2.060(6)



Mg(3)—O(4)
2.067(5)



Mg(3)—O(9)
2.076(6)



Mg(3)—O(7)
2.109(5)



O(7)—S(2)
1.500(5)



S(2)—C(31)
1.766(6)



S(2)—C(32)
1.792(6)



O(8)—S(3)
1.498(5)



S(3)—C(33)
1.773(7)



S(3)—C(34)
1.782(7)



O(9)—S(4)
1.480(5)



S(4)—C(35)
1.781(7)



S(4)—C(36)
1.786(7)

















TABLE 23c










Bond Distances for the Crystalline Product of Example 31.










Bond Angle
Angle (deg)







C21—N11—C81
101.4(3)



C21—N11—Mg(1)
116.4(2)



C81—N11—Mg(1)
142.0(3)



N31—C21—N11
119.6(3)



N31—C21—S11
123.5(3)



N11—C21—S11
116.8(3)



C21—N31—C91
100.4(3)



C51—C41—C91
117.8(4)



C41—C51—C61
121.9(4)



C71—C61—O21
124.1(4)



C71—C61—C51
121.3(4)



O21—C61—C51
114.6(4)



C61—C71—C81
117.6(4)



N11—C81—C71
130.0(4)



N11—C81—C91
108.0(3)



C71—C81—C91
122.1(3)



N31—C91—C81
110.5(3)



N31—C91—C41
130.2(4)



C81—C91—C41
119.2(4)



C111—C101—S11
109.6(3)



N121—C111—C161
123.7(4)



N121—C111—C101
113.0(3)



C161—C111—C101
123.1(4)



C131—N121—C111
117.7(4)



N121—C131—C141
124.8(4)



C131—C141—C151
115.7(4)



C131—C141—C181
121.9(4)



C151—C141—C181
122.3(4)



O31—C151—C141
121.4(4)



O31—C151—C161
117.2(4)



C141—C151—C161
120.6(4)



C111—C161—C151
116.5(4)



C111—C161—C201
123.9(4)



C151—C161—C201
119.1(4)



S11—O11—Mg(1)
120.1(2)



C61—O21—C171
117.7(4)



C151—O31—C191
121.1(5)



O11—S11—C21
103.6(2)



O11—S11—C101
106.3(2)



C21—S11—C101
98.3(2)



C22—N12—C82
102.1(3)



C22—N12—Mg(1)
117.2(2)



C82—N12—Mg(1)
139.0(3)



N32—C22—N12
119.1(3)



N32—C22—S12
123.8(3)



N12—C22—S12
117.1(3)



C22—N32—C92
100.8(3)



C52—C42—C92
117.6(4)



C42—C52—C62
122.1(4)



C72—C62—C52
121.7(4)



C72—C62—O22
123.3(4)



C52—C62—O22
114.9(4)



C62—C72—C82
117.2(4)



N12—C82—C72
130.6(4)



N12—C82—C92
107.4(3)



C72—C82—C92
122.0(3)



N32—C92—C82
110.7(3)



N32—C92—C42
129.9(4)



C82—C92—C42
119.4(4)



C112—C102—S12
110.4(3)



N122—C112—C162
123.9(3)



N122—C112—C102
112.9(4)



C162—C112—C102
123.3(4)



C132—N122—C112
117.1(4)



N122—C132—C142
125.0(4)



C132—C142—C152
116.1(4)



C132—C142—C182
121.8(4)



C152—C142—C182
122.0(4)



O32—C152—C162
119.4(4)



O32—C152—C142
119.6(3)



C162—C152—C142
120.9(3)



C112—C162—C152
116.8(4)



C112—C162—C202
122.6(4)



C152—C162—C202
120.6(4)



S12—O12—Mg(1)
121.6(2)



C62—O22—C172
116.4(4)



C152—O32—C192
115.3(4)



O12—S12—C22
103.1(2)



O12—S12—C102
105.5(2)



C22—S12—C102
97.9(2)



C23—N13—C83
101.9(3)



C23—N13—Mg(1)
119.0(2)



C83—N13—Mg(1)
139.1(2)



N33—C23—N13
119.1(3)



N33—C23—S13
124.4(3)



N13—C23—S13
116.4(3)



C23—N33—C93
100.7(3)



C53—C43—C93
117.2(4)



C43—C53—C63
122.7(4)



C73—C63—C53
121.0(3)



C73—C63—O23
122.2(4)



C53—C63—O23
116.8(4)



C63—C73—C83
117.3(4)



N13—C83—C73
129.0(3)



N13—C83—C93
108.0(3)



C73—C83—C93
122.9(3)



N33—C93—C83
110.2(3)



N33—C93—C43
130.9(3)



C83—C93—C43
118.8(3)



C113—C103—S13
110.3(3)



N123—C113—C163
122.2(3)



N123—C113—C103
113.5(3)



C163—C113—C103
124.2(3)



C133—N123—C113
117.9(4)



N123—C133—C143
126.3(4)



C133—C143—C153
115.0(3)



C133—C143—C183
124.6(4)



C153—C143—C183
120.4(4)



O33—C153—C163
121.7(3)



O33—C153—C143
117.5(3)



C163—C153—C143
120.7(3)



C113—C163—C153
117.7(3)



C113—C163—C203
122.0(3)



C153—C163—C203
120.2(3)



S13—O13—Mg(1)
120.42(19)



C63—O23—C173
117.7(5)



C153—O33—C193
117.5(5)



O13—S13—C23
102.82(18)



O13—S13—C103
105.47(19)



C23—S13—C103
98.2(2)



C24—N14—C84
101.8(3)



C24—N14—Mg(2)
119.1(2)



C84—N14—Mg(2)
139.0(3)



N34—C24—N14
119.4(3)



N34—C24—S14
124.2(3)



N14—C24—S14
116.5(3)



C24—N34—C94
100.6(3)



C54—C44—C94
117.2(4)



C44—C54—C64
122.2(4)



C74—C64—C54
121.9(4)



C74—C64—O24
123.5(4)



C54—C64—O24
114.5(4)



C64—C74—C84
116.9(4)



N14—C84—C74
129.8(4)



N14—C84—C94
107.8(3)



C74—C84—C94
122.4(3)



N34—C94—C84
110.5(3)



N34—C94—C44
130.1(4)



C84—C94—C44
119.4(3)



C114—C104—S14
111.7(3)



N124—C114—C164
122.8(3)



N124—C114—C104
114.4(3)



C164—C114—C104
122.8(3)



C734—N124—C114
117.6(4)



N124—C734—C144
125.6(4)



C734—C144—C154
115.4(3)



C734—C144—C184
123.5(4)



C154—C144—C184
121.1(4)



O34—C154—C164
120.2(3)



O34—C154—C144
119.0(3)



C164—C154—C144
120.8(3)



C154—C164—C114
117.7(3)



C154—C164—C204
119.9(3)



C114—C164—C204
122.4(3)



S14—O14—Mg(2)
120.94(18)



C64—O24—C174
116.7(4)



C154—O34—C194
115.8(4)



O14—S14—C24
103.48(19)



O14—S14—C104
105.7(2)



C24—S14—C104
98.43(18)



C25—N15—C85
101.5(3)



C25—N15—Mg(2)
116.4(2)



C85—N15—Mg(2)
140.9(3)



N35—C25—N15
119.8(3)



N35—C25—S15
122.5(3)



N15—C25—S15
117.6(3)



C25—N35—C95
100.2(3)



C55—C45—C95
118.1(4)



C45—C55—C65
121.7(4)



C75—C65—O25
124.0(4)



C75—C65—C55
121.4(4)



O25—C65—C55
114.6(4)



C65—C75—C85
117.7(4)



N15—C85—C75
130.4(4)



N15—C85—C95
107.8(3)



C75—C85—C95
121.8(4)



N35—C95—C85
110.7(3)



N35—C95—C45
130.0(4)



C85—C95—C45
119.3(4)



C115—C105—S15
109.7(3)



N125—C115—C165
123.7(3)



N125—C115—C105
113.0(3)



C165—C115—C105
123.2(3)



C135—N125—C115
117.3(4)



N125—C135—C145
125.3(4)



C135—C145—C155
115.8(3)



C135—C145—C185
122.2(4)



C155—C145—C185
122.0(4)



O35—C155—C165
119.3(3)



O35—C155—C145
119.6(3)



C165—C155—C145
121.0(3)



C115—C165—C155
116.8(3)



C115—C165—C205
123.0(4)



C155—C165—C205
120.1(3)



S15—O15—Mg(2)
120.79(18)



C65—O25—C175
116.3(4)



C155—O35—C195
114.9(4)



O15—S15—C25
102.72(18)



O15—S15—C105
105.7(2)



C25—S15—C105
97.6(2)



C26—N16—C86
102.1(3)



C26—N16—Mg(2)
117.4(2)



C86—N16—Mg(2)
139.7(3)



N36—C26—N16
119.4(3)



N36—C26—S16
123.8(3)



N16—C26—S16
116.8(3)



C26—N36—C96
100.5(3)



C56—C46—C96
118.0(3)



C46—C56—C66
121.9(3)



C76—C66—O26
123.0(4)



C56—C66—O26
115.6(4)



C66—C76—C86
118.0(4)



N16—C86—C76
130.6(3)



N16—C86—C96
107.5(3)



C76—C86—C96
121.8(3)



N36—C96—C86
110.6(3)



N36—C96—C46
130.3(4)



C86—C96—C46
119.1(3)



C116—C106—S16
112.8(3)



N126—C116—C166
122.7(3)



N126—C116—C106
113.7(3)



C166—C116—C106
123.5(3)



C136—N126—C116
117.6(4)



N126—C136—C146
125.5(4)



C136—C146—C156
115.5(3)



C136—C146—C186
123.0(4)



C156—C146—C186
121.5(4)



O36—C156—C166
120.6(3)



O36—C156—C146
118.4(3)



C166—C156—C146
120.8(3)



C156—C166—C116
117.6(3)



C156—C166—C206
120.6(4)



C116—C166—C206
121.7(4)



S16—O16—Mg(2)
120.55(18)



C66—O26—C176
117.6(5)



C156—O36—C196
116.3(5)



O16—S16—C26
102.97(18)



O16—S16—C106
106.6(2)



C26—S16—C106
97.7(2)



O11—Mg(1)—012
92.31(15)



O11—Mg(1)—N13
167.71(16)



O12—Mg(1)—N13
91.13(18)



O11—Mg(1)—O13
88.55(15)



O12—Mg(1)—O13
88.90(14)



N13—Mg(1)—O13
79.72(13)



O11—Mg(1)—N11
81.48(14)



O12—Mg(1)—N11
172.95(17)



N13—Mg(1)—N11
95.64(17)



O13—Mg(1)—N11
94.25(16)



O11—Mg(1)—N12
94.83(17)



O12—Mg(1)—N12
79.71(13)



N13—Mg(1)—N12
97.39(17)



O13—Mg(1)—N12
168.22(16)



N11—Mg(1)—N12
97.40(16)



O15—Mg(2)—016
94.16(14)



O15—Mg(2)—N16
173.74(17)



O16—Mg(2)—N16
81.10(13)



O15—Mg(2)—N15
80.74(13)



O16—Mg(2)—N15
96.76(17)



N16—Mg(2)—N15
95.69(16)



O15—Mg(2)—O14
90.99(14)



O16—Mg(2)—O14
87.17(14)



N16—Mg(2)—O14
92.85(16)



N15—Mg(2)—O14
171.05(15)



O15—Mg(2)—N14
90.88(16)



O16—Mg(2)—N14
165.71(16)



N16—Mg(2)—N14
94.69(16)



N15—Mg(2)—N14
97.24(15)



O14—Mg(2)—N14
79.37(13)



O(5)—Mg(3)—O(6)
84.2(2)



O(5)—Mg(3)—O(8)
92.6(3)



O(6)—Mg(3)—O(8)
99.2(2)



O(5)—Mg(3)—O(4)
174.7(2)



O(6)—Mg(3)—O(4)
90.6(2)



O(8)—Mg(3)—O(4)
87.6(2)



O(5)—Mg(3)—O(9)
90.9(3)



O(6)—Mg(3)—O(9)
88.4(2)



O(8)—Mg(3)—O(9)
171.9(3)



O(4)—Mg(3)—O(9)
89.6(2)



O(5)—Mg(3)—O(7)
94.0(2)



O(6)—Mg(3)—O(7)
174.9(3)



O(8)—Mg(3)—O(7)
85.6(2)



O(4)—Mg(3)—O(7)
91.3(2)



O(9)—Mg(3)—O(7)
86.9(2)



S(2)—O(7)—Mg(3)
126.3(3)



O(7)—S(2)—C(31)
104.0(4)



O(7)—S(2)—C(32)
105.3(4)



C(31)—S(2)—C(32)
95.8(3)



S(3)—O(8)—Mg(3)
147.2(4)



O(8)—S(3)—C(33)
102.5(4)



O(8)—S(3)—C(34)
105.5(4)



C(33)—S(3)—C(34)
95.8(4)



S(4)—O(9)—Mg(3)
133.1(4)



O(9)—S(4)—C(35)
103.0(4)



O(9)—S(4)—C(36)
107.3(5)



C(35)—S(4)—C(36)
94.5(4)










EXAMPLE 32

Evaluation of Magnesium S-Omeprazole Sample By X-ray Powder Diffraction.


Magnesium S-omeprazole samples were placed on a zero background plate in a random orientation and evaluated by X-ray powder diffraction on a Siemens D500 using the following analysis parameters:

    • Range: 2.0-40.0° 2-theta scan
    • Slew: 2.4°/minute, continuous scan
    • Sampling rate: 0.05°/data point
    • Slits: 1°, 1°, 1°, 0.15, 0.15.
    • Radiation: CuKα.
    • Power: 50 kV, 30 mA.

Claims
  • 1. A magnesium S-omeprazolato coordination complex in the solid state according to formula (I):
  • 2. The compound according to claim 1 wherein at least one of the pyridyl rings is in the SP stereochemical configuration.
  • 3. The compound according to claim 2 wherein at least 3 of the pyridyl rings are in the SP stereochemical configurations.
  • 4. The compound according to claim 3 wherein all of the pyridyl rings are in the SP stereochemical configurations.
  • 5. The compound according to claim 1 wherein at least one S-omeprazolato ligand bears a 6-methoxy group.
  • 6. The compound according to claim 5 wherein at least three S-omeprazolato ligands bear 6-methoxy groups.
  • 7. The compound according to claim 6 wherein at least four S-omeprazolato ligands bear 6-methoxy groups.
  • 8. The compound according to claim 7 wherein at least five S-omeprazolato ligands bear 6-methoxy groups.
  • 9. The compound according to claim 8 wherein each S-omeprazolato ligand bears a 6-methoxy group.
  • 10. The compound according to claim 1 wherein at least one S-omeprazolato ligand is in the δ chelate ring conformation.
  • 11. The compound according to claim 10 wherein at least two S-omeprazolato ligands are in the δ chelate ring conformation.
  • 12. The compound according to claim 11 wherein at least three S-omeprazolato ligands are in the δ chelate ring conformation.
  • 13. The compound according to claim 12 wherein at least four S-omeprazolato ligands are in the δ chelate ring conformation.
  • 14. The compound according to claim 13 wherein at least five S-omeprazolato ligands are in the δ chelate ring conformation.
  • 15. The compound according to claim 14 wherein each S-omeprazolato ligand is in the δ chelate ring conformation.
  • 16. The compound according to claim 1 wherein at least one S-omeprazolato ligand is in the λ chelate ring conformation.
  • 17. The compound according to claim 16 wherein at least two S-omeprazolato ligands are in the λ chelate ring conformation.
  • 18. The compound according to claim 17 wherein at least three S-omeprazolato ligands are in the λ chelate ring conformation.
  • 19. The compound according to claim 18 wherein at least four S-omeprazolato ligands are in the λ chelate ring conformation.
  • 20. The compound according to claim 19 wherein at least five S-omeprazolato ligands are in the λ chelate ring conformation.
  • 21. The compound according to claim 20 wherein each S-omeprazolato ligand is in the λ chelate ring conformation.
  • 22. The compound according to claim 1 wherein at least one [Mg(S-omeprazolato)3]− complex is present as the Δ stereoisomer.
  • 23. The compound according to claim 22 wherein each [Mg(S-omeprazolato)3]− complex is present as the Δ stereoisomer.
  • 24. The compound according to claim 1 wherein at least one [Mg(S-omeprazolato)3]− complex is present as the Λ stereoisomer.
  • 25. The compound according to claim 24 wherein each [Mg(S-omeprazolato)3]− complex is present as the Λ stereoisomer.
  • 26. The compound according to claim 1 wherein all of the sulfur atoms are the S stereoisomers, at least four S-omeprazolato ligands bear 6-methoxy groups, and each [Mg(S-omeprazolato)3]− complex is present as the A stereoisomer.
  • 27. The compound according to claim 26 wherein at least five S-omeprazolato ligands bear 6-methoxy groups.
  • 28. The compound according to claim 1 wherein all of the sulfur atoms are the S stereoisomers, at least four S-omeprazolato ligands bear 6-methoxy groups, and each [Mg(S-omeprazolato)3]− complex is present as the Δ stereoisomer.
  • 29. The compound according to claim 28 wherein at least five S-omeprazolato ligands bear 6-methoxy groups.
  • 30. The compound according to claim 1 wherein solva, solvb and solvc are independently selected from the group consisting of H2O, DMSO, DMF, acetone, and a C1-6-alkyl alcohol.
  • 31. The compound according to claim 30 wherein the C1-6-alkyl-alcohol is methanol or ethanol.
  • 32. The compound according to claim 30 wherein solva, solvb and solvc are independently selected from DMF and H2O.
  • 33. The compound according to claim 32 wherein solva is H2O and solvb and solvc each are DMF.
  • 34. The compound according to claim 30 wherein solva, solvb and solvc are independently selected from DMSO and H2O.
  • 35. The compound according to claim 30 wherein at least one of solva, solvb and solvc is H2O.
  • 36. The compound according to claim 30 wherein at least one of solva, solvb and solvc is DMSO.
  • 37. The compound according to claim 30 wherein at least one of solva, solvb and solvc is DMF.
  • 38. The compound according to claim 30 wherein at least one of solva, solvb and solvc is acetone.
  • 39. The compound according to claim 30 wherein at least one of solva, solvb and solvc is methanol
  • 40. The compound according to claim 30 wherein at least one Of solva, solvb and solvc is ethanol.
  • 41. The compound according to claim 33 wherein x is 5 and y and z are each 1.
  • 42. The compound according to claim 30 wherein solva is H2O and solvb is DMSO.
  • 43. The compound according to claim 42 wherein x and y are each 3 and z is 0.
  • 44. The compound according to claim 43 wherein Mg(H2O)3(DMSO)3+ is the mer stereo isomer.
  • 45. The compound according to claim 1 that is: Δ,Δ-[Mg(H2O)5DMF] [Mg(6-methoxy-5-omeprazolato)3] [Mg(6-methoxy-S-omeprazolato)2(5-methoxy-5-omeprazolato)].DMF; Δ,Δ-[Mg(H2O)5DMF][Mg(6-methoxy-5-omeprazolato)3] [Mg(6-methoxy-S-omeprazolato)2(5-methoxy-5-omeprazolato)].H2O; Δ,Δ-[Mg(H2O)5DMF][Mg(6-methoxy-5-omeprazolato)3] [Mg(6-methoxy-S-omeprazolato)2(5-methoxy-5-omeprazolato)].(H2O)z(DMF)z; or mer-[Mg(H2O)3(DMSO)3]-Δ,Δ-[Mg(6-methoxy-5-omeprazolato)3]2.(H2O)2, wherein S designates the absolute stereochemistry about each sulfur atom.
  • 46. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 47. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 48. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 49. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 50. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 51. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 52. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 53. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 54. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 55. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 56. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 57. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 58. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 59. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 60. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 61. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 62. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 63. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 64. A compound according to claim 1, characterized in that it exhibits the following major peaks in its powder X-ray diffractogram:
  • 65. A compound according to claim 1, characterized in that it exhibits the following major resonances in its solid-state 13C NMR spectrum:
  • 66. A compound according to claim 1, characterized in that it exhibits the following major resonances in its solid-state 13C NMR spectrum:
  • 67. A compound according to claim 1, characterized in that it exhibits the following major resonances in its solid-state 13C NMR spectrum:
  • 68. A process for the preparation of the compound according to claim 1 comprising: (a) Applying a mixture of R- and S-5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole dissolved in a first solvent to a chromatography column; (b) Eluting the column with an eluant comprising supercritical CO2 and, optionally, one or more co-solvents, thereby separating R— and S-omeprazole; (c) Isolating the eluted S-omeprazole as a mixture of the 5- and 6-methoxy isomers; (d) Reacting the isolated S-omeprazole with a magnesium source in a second solvent; and (e) Precipitating the product obtained in (d) from one or more of solva, solvb, and solvc.
  • 69. The process according to claim 68, further comprising (f) crystallizing the product obtained in step (e) from one or more of solva, solvb, and solvc.
  • 70. The process according to claim 68, wherein the product obtained in (e) is substantially crystalline.
  • 71. The process according to claim 68 wherein the eluant comprises at least one co-solvent.
  • 72. The process according to claim 69 wherein the co-solvent is selected from C1-6-alkyl alcohols.
  • 73. The process according to claim 72 wherein the co-solvent is methanol or ethanol.
  • 74. The process according to claim 72 wherein the eluant further comprises at least one amine of the formula NR1R2R3, wherein R1, R2, and R3 are independently selected from the group consisting of H and C1-6-alkyl, or a salt thereof.
  • 75. The process according to claim 74 wherein the amine is selected from the group consisting of dimethylamine, triethylamine and dimethylethylamine.
  • 76. The process according to claim 74 wherein the eluant further comprises one or more acid addition salts of at least one amine.
  • 77. The process according to claim 76 wherein the acid addition salts are selected from the group consisting of acetates, chlorides, bromides, and iodides of the amines.
  • 78. The process according to claim 77 wherein the acid addition salt is ammonium acetate.
  • 79. The process according to claim 68 wherein the magnesium source is a reagent of the general formula XMgR or MgR2, wherein X is a halide selected from Cl, Br, and I and R is selected from the group consisting of C1-6-alkyl and C6-12-aryl.
  • 80. The process according to claim 79 wherein the magnesium source is a reagent of the formula XMgR.
  • 81. The process according to claim 68 wherein the magnesium source is a compound of the formula Mg(OR4)2, wherein R4 is selected from C1-6-alkyl and C6-12-aryl.
  • 82. The process according to claim 68 wherein the magnesium source is selected from the group consisting of magnesium chloride, magnesium bromide, magnesium iodide, and mixed halides thereof; magnesium acetate; magnesium sulfate; magnesium phosphate; magnesium formate; magnesium tartrate, and magnesium carbonate.
  • 83. A process for the preparation of the compound according to claim 1 comprising: (a) Reacting a mixture of R- and S-5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole with an organic base to form a racemic mixture of the corresponding omeprazolate salts; (b) Applying the mixture of omeprazolate salts dissolved in a first solvent to a chromatography column; (c) Eluting the column with an eluant comprising a supercritical fluid and an optional co-solvent, thereby separating R- and S-omeprazolate salts; (d) Isolating the eluted S-omeprazolate salt as a mixture of the 5- and 6-methoxy isomers; (e) Reacting the isolated S-omeprazolate salt with a magnesium source in a second solvent; and (f) Precipitating the product obtained in (e) from one or more of solva, solvb, and solvc.
  • 84. The process according to claim 83, further comprising (g) crystallizing the product obtained in step (f) from one or more of solva, solvb, and solvc.
  • 85. The process according to claim 83, wherein the product obtained in (f) is substantially crystalline.
  • 86. A compound that is made by the process comprising: (a) Applying a mixture of R- and S-5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole dissolved in a first solvent to a chromatography column; (b) Eluting the column with an eluant comprising supercritical CO2 and, optionally, one or more co-solvents, thereby separating R— and S-omeprazole; (c) Isolating the eluted S-omeprazole as a mixture of the 5- and 6-methoxy isomers; (d) Reacting the isolated S-omeprazole with a magnesium source in a second solvent; and (e) Precipitating the product obtained in (d) from one or more Of solva, solvb, and solvc as defined in claim 1.
  • 87. The compound according to claim 86, wherein the process further comprises (f) crystallizing the product obtained in step (e) from one or more of solva, solvb, and solvc.
  • 88. The compound according to claim 86, wherein the product obtained in (e) is substantially crystalline.
  • 89. A compound according to formula I of claim 1 that is made by the process comprising: (a) Applying a mixture of R- and S-5(6)-methoxy-2-[(4-methoxy-3,5-dimethyl-2-pyridyl)methylsulfinyl]-1H-benzimidazole dissolved in a first solvent to a chromatography column; (b) Eluting the column with an eluant comprising supercritical CO2 and, optionally, one or more co-solvents, thereby separating R- and S-omeprazole; (c) Isolating the eluted S-omeprazole as a mixture of the 5- and 6-methoxy isomers; (d) Reacting the isolated S-omeprazole with a magnesium source in a second solvent; and (e) Precipitating the product obtained in (d) from one or more of solva, solvb, and solvc.
  • 90. The compound according to claim 89, wherein the process further comprises (f) crystallizing the product obtained in step (e) from one or more of solva, solvb, and solvc.
  • 91. The compound according to claim 89, wherein the product obtained in (e) is substantially crystalline.
  • 92. A pharmaceutical composition comprising a therapeutically effective amount of a compound according to claim 1 and a pharmaceutically acceptable carrier, diluent, excipient, or combination thereof.
  • 93. A method of treating a gastric acid related condition in a subject comprising administering to the subject suffering from the condition a therapeutically effective amount of the compound according to claim 1.
  • 94. A method of treating a gastric acid related condition in a subject comprising administering to the subject suffering from the condition a therapeutically effective amount of the pharmaceutical composition according to claim 92.
  • 95. The method according to claim 93 or 94 wherein the condition is selected from the group consisting of duodenal cancer, H. pylori infection, gastric ulcer, gastro-esophageal reflux disease, heartburn, erosive esophagitis, pathological hypersecretary conditions, gastritis, duodenitis, non-ulcer dyspepsia, acute upper gastrointestinal bleeding, and stress ulceration.
  • 96. The method according to claim 95 wherein the pathological hypersecretary condition is selected from the group consisting of Zollinger-Ellison syndrome, endocrine adenomas, and systematic mastocytosis.
  • 97. A method of inhibiting gastric acid secretion in a subject comprising administering to the subject suffering from the condition a therapeutically effective amount of the compound according to claim 1.
  • 98. A method of inhibiting gastric acid secretion in a subject comprising administering to the subject suffering from the condition a therapeutically effective amount of pharmaceutical composition according to claim 92.
  • 99. A magnesium R-omeprazolato coordination complex in the solid state according to formula (II):
  • 100. A magnesium omeprazolato coordination complex in the solid state according to formula (IIIa):
  • 101. A magnesium omeprazolato coordination complex in the solid state according to formula (IIIb):