Markers for labour

Information

  • Patent Application
  • 20080233106
  • Publication Number
    20080233106
  • Date Filed
    March 22, 2007
    17 years ago
  • Date Published
    September 25, 2008
    16 years ago
Abstract
The invention relates to markers which find use in the diagnosis of labour or pre-term labour, to assays comprising such markers, to methods of identifying therapeutic agents which can prolong pregnancy, using these markers and to methods of treatment of pre-term labour, methods of prolonging gestation, or methods of suppressing labour contractility based on the markers.
Description
FIELD OF THE INVENTION

The invention relates to markers which find use in the diagnosis of labour or pre-term labour, to assays comprising such markers, to methods of identifying therapeutic agents which can prolong pregnancy, using these markers and to methods of treatment of pre-term labour, methods of prolonging gestation, or methods of suppressing labour contractility, inhibiting labour, or slowing down or halting the contractions of the uterus, based on the markers.


BACKGROUND OF THE INVENTION

Pre-term labour (before 37 weeks gestation) affects 5-10% of all pregnancies and accounts for 70-75% of early neonatal morbidity and mortality. During human labour the myometrium is transformed from a state of relative quiescence to one of maximal contractile activity. The regulatory mechanisms underlying myometrial smooth muscle contractility during labour are poorly understood. Information relating to these mechanisms is essential to understand the underlying aetiology of disorders associated with human parturition such as pre-term labour.


Recently, functional genomics tools have been employed in attempts to further elucidate the mechanisms regulating myometrial contractility during labour (Aguan et al., 2000; Charpigny et al., 2003; Esplin et al., 2005; Havelock et al., 2005; Bukowski et al., 2006). These studies have revealed a complex picture involving multiple pathways associated with a variety of cellular processes including transcriptional regulation, intracellular signalling and cytoskeletal rearrangement. Inflammatory processes have long been implicated in the mechanisms of parturition and a growing body of evidence now suggests a major role for inflammation and inflammation-associated molecules in the process of normal labour (Keelan et al., 2003; Romero et al., 2006).


Labour onset results in the recruitment of neutrophils, macrophages and T-lymphocytes to the myometrium (Young et al., 2002; Keski-Nisula et al., 2003) by chemokines and other chemoattractant molecules (Osmers et al., 1995; Keelan et al., 1997; Athayde et al., 2000). These events are accompanied by local expression of cell adhesion molecules (Marvin et al., 1999) and metalloproteinases (Ledingham et al., 1999), resulting in increased levels of interleukin-1 (IL-1β), IL-6, IL-8 and TNF-α in the labouring uterus and cervix (Keelan et al., 1999; Osman et al., 2003). These proinflammatory cytokines are thought to contribute to labour onset by stimulating IL-8 and prostaglandin production resulting in increased myometrial contractility, cervical ripening and fetal membrane re-modelling (Olson, 2003; Lindstrom and Bennett, 2005).


Current, so-called tocolytic therapies to inhibit pre-term labour are targeted at modulating uterine contractions. β2 adrenergic receptor agonists are widely used for treatment for pre-term labour. The only FDA approved treatment for pre-term labour is ritodrine, a β2 adrenergic receptor agonist. However, it was withdrawn in 1999, due to side-effects. A more widely used treatment for pre-term labour, terbutaline, is not approved by the FDA for pre-term labour. Atosiban, an oxytocin antagonist is available in Europe, but was denied regulatory approval in the US. The usefulness of β2 adrenergic agonists is limited by the side-effects they produce, including cardiovascular side-effects including heart palpitations (via stimulation of β1 adrenergic receptors).


There have been suggestions that TLR2 is up-regulated late in pregnancy, and is not involved in labour onset, but in the preparation of the uterus for labour and therefore not associated with preterm labour.


Similarly there have been suggestions that the TLR2 protein also is upregulated at term labour and not in pre-term labour. (Youssef et al., 2006, Youssef et al., 2007) US patent application No. 2006/0166242 discloses a number of peripheral white blood cell markers involved in pre-term labour.


To further elucidate some of the molecular mechanisms involved in the regulation of the initiation of labour, to identify suitable diagnostic markers of labour onset, and to identify novel uterine-specific therapeutic targets for the treatment of preterm labour, the present inventors analysed global gene expression changes in human myometrium during pregnancy and labour using cDNA microarrays. The results reveal some previously identified genes known to be involved in regulating myometrial contractility at labour, as well as several novel factors, including transcription and splicing factors, inflammation and structural genes, all of which play key roles in regulating myometrial contractility. Quantitative real-time RT-PCR and Western blotting were performed to verify the upregulation of expression of 14 selected physiologically relevant genes, including Cybr (PSCDBP), TLR2, ETB (EDNRB), RGS12, from the microarray study, in human myometrial tissue biopsies.


OBJECT OF THE INVENTION

Currently used interventional therapies to suppress uterine contractions and delay labour, have harmful side effects for mother and baby. It is thus an object of the invention to provide a method of identification of novel therapeutic agents for use in pre-term labour, which can suppress uterine contractions, inhibit contractility, delay full labour, and delay the onset of labour. A further object is to provide diagnostic markers which can be used to identify mothers who are likely to have or are susceptible to pre-term labour or to diagnose early the onset of pre-term labour, which in turn would allow intervention to prevent pre-term labour.


Another object is to provide an assay for determination of the onset of labour. A further object is to provide assays that are effective in identifying pre-term labour and so reduce the premature birth rate and/or provide for longer gestation. A still further object is to provide candidate uterine-specific target molecules for therapeutic intervention in pre-term labour, and to provide potential therapeutic targets in regulating uterine contractility.


It is a further object of the invention to provide assays and methods which permit pregnancy to proceed and so let the fetus gain in size and maturity before being born.


SUMMARY OF THE INVENTION

According to the present invention there is provided use as a diagnostic marker of labour or pre-term labour of at least one of the cDNA sequences selected from the group consisting of the sequences disclosed in Tables 4 and 5, or an mRNA encoded by any of the cDNA sequences, a polypeptide encoded by the said cDNA or mRNA, a protein encoded by the said cDNA or mRNA or comprising a polypeptide encoded by the said cDNA or mRNA or an antibody raised against such a polypeptide or protein. The invention also provides a diagnostic assay for labour or pre-term labour comprising at least one of the cDNA sequences selected from the group consisting of the sequences disclosed in Tables 4 and 5, or an mRNA encoded by any of the cDNA sequences, a polypeptide encoded by the said cDNA or mRNA, a protein encoded by the said cDNA or mRNA or comprising a polypeptide encoded by the said cDNA or mRNA or an antibody raised against such a polypeptide or protein.


In another aspect the invention provides use of at least one of the cDNA sequences selected from the group consisting of the sequences disclosed in Tables 4 and 5, or an mRNA encoded by any of the CDNA sequences, a polypeptide encoded by the said cDNA or mRNA, a protein encoded by the said cDNA or mRNA or comprising a polypeptide encoded by the said cDNA or mRNA or an antibody raised against such a polypeptide or protein in a collagen contractility assay.


In a still further aspect the invention provides use in a method of identifying therapeutic agents which can prolong gestation and/or arrest pre-term labour, at least one of the cDNA sequences selected from the group consisting of the sequences disclosed in Tables 4 and 5, or an mRNA encoded by any of the cDNA sequences, a polypeptide encoded by the said cDNA or mRNA, a protein encoded by the said cDNA or mRNA or comprising a polypeptide encoded by the said cDNA or mRNA or an antibody raised against such a polypeptide or protein.


The presence of or an increased level compared to a control of a marker consisting of the sequences disclosed in Table 4, may be indicative of pre-term labour whilst the absence of or a decreased level compared to a control of a marker in the group consisting of the sequences disclosed in Table 5 may be indicative of pre-term labour. Preferably in the above uses or assays, more than one marker is used. For example at least five or at least ten and more preferably all of the markers are used. Particularly preferred for use in the assays, methods or uses are the markers PSCDBP(Cybr), TLR2, SOCS3, EDNRB(ETB) and RGS12.


The markers for use in the assays, methods or uses may be at least one marker selected from the cDNA sequences disclosed in Tables 6 and 7, or an mRNA encoded by any of the cDNA sequences, a polypeptide encoded by the said cDNA or mRNA, a protein encoded by the said cDNA or mRNA or comprising a polypeptide encoded by the said cDNA or mRNA or an antibody raised against such a polypeptide or protein. The assay may be a real-time PCR assay, a customised micro-array assay or a histochemical assay. All such assays are well known to those of skill in the art. Where the assay is a histochemical assay, the antibody may be labelled with a suitable label. Suitable labels include coloured labels, fluorescent labels and radioactive labels.


The invention also provides a solid support onto which one or more of the cDNA sequences, mRNAs, polypeptides, proteins or antibodies as described above, have been fixed. The invention also provides diagnostic kits for labour or pre-term labour comprising cDNA sequences, mRNAs, polypeptides, proteins or antibodies as described above.


In a still further aspect the invention provides a method of treatment of pre-term labour, a method of prolonging gestation, or a method of suppressing labour contractility comprising administering to a patient in need of such treatment, an inhibitor of the protein product of a sequence shown in Table 4, or an agent which can silence a sequence shown in Table 4. The agent which silences the gene may by an siRNA molecule directed against any of the cDNA sequences or an antibody directed against the protein product of any of the cDNA sequences.


The invention also provides a method of treatment of pre-term labour, a method of prolonging gestation, or a method of suppressing labour contractility comprising administering to a patient in need of such treatment, an activator of a cDNA sequence or the protein product of a cDNA sequence shown in Table 5.





BRIEF DESCRIPTION OF THE DRAWINGS

The file of the patent contains at least one drawing executed in color. Copies of this patent with color drawing(s) will be provided by the Patent and Trademark Office upon request and payment of the necessary fee.



FIG. 1: RT-PCR amplification of RGS12, Cybr (PSCDBP), FLJ35382, Twist-1, ETB (EDNRB) and TLR2 from human uterine smooth muscle cell RNA. The DNA marker in each gel is a 100 bp ladder.



FIG. 2: Graphical representations of real time fluorescence RT-PCR results of normalised crossing temperature values (Ct) plotted against myometrial pregnancy state (PNL n=7, PL n=6) for each of the genes: FLJ35382, Cybr (PSCDBP), TLR2, Twist 1, ETB (EDNRB) and RGS 12.



FIG. 3: A summary of the fold changes for each gene at labour in comparison to the non-labouring state in human myometrium, from real time fluorescence RT-PCR analysis. Fold change is plotted against gene name: FLJ35382, Cybr (PSCDBP), TLR2, Twist 1, ETB (EDNRB) and RGS 12, in descending order from left to right.



FIG. 4: Confocal immunolocalisation of (a) Cybr (PSCDBP) and (b)TLR2 in human uterine smooth muscle cells after incubation with primary goat anti-human antibodies and green AlexaFluor488 donkey anti-goat secondary antibodies. No staining was evident after incubation with anti-goat secondary in the absence of primary antibody (c). Original magnification X40.



FIG. 5: Immunogold labelling transmission electron microscopy localisation of RGS12 in human pregnant myometrial tissue (a-c). The second two pictures are larger magnifications of the first picture (a) focusing on the nucleus (b) and vacuoles (c). No staining was evident after incubation with anti-gold secondary antibody in the absence of primary antibody (d). RGS12 immunogold labelled particles are evident as black dots on the cell nucleus and in the cytosol near cell vacuoles. The cell organelles are visible due to uranyl acetate and lead citrate staining.





DETAILED DESCRIPTION OF THE INVENTION

Patient Recruitment and Tissue Collection


Patient recruitment took place in the Department of Obstetrics and Gynaecology, University College Hospital Galway (UCHG), Ireland. Biopsies of myometrium were excised from the midline of the upper lip of the uterine incision, during elective (pregnant at term-pregnant non-labouring, PNL) and intrapartum (pregnant labouring, PL) caesarean section. Women who had received prostaglandins or oxytocin were excluded from the study. The criteria for inclusion in the intrapartum group were regular spontaneous uterine contractions, effacement of the cervix, and cervical dilatation >3 cm prior to caesarean section. Women with malignant conditions, and those receiving exogenous hormone therapy (e.g. progestagens), were excluded from the study. Immediately upon removal, biopsies were rinsed in sterile saline and used directly for primary cell preparation or snap frozen in liquid nitrogen and stored at −80° C. until RNA isolation.


RNA Extraction and Reverse Transcription


Total RNA was isolated from human myometrium using TRIzol reagent (Life Technologies Ltd., UK) (Chomczynski, 1993). Total RNA was isolated from the uterine smooth muscle cells using the RNeasy mini RNA isolation kit (Qiagen, Crawley, West Sussex, UK). All RNA samples were DNase I treated using the DNA-free™ kit (Ambion, Spitfire Close, Huntingdon, Cambridgeshire, UK) RNA (500 ng-DNase I treated) was reverse transcribed into complementary DNA (cDNA) for use as a template for Polymerase Chain Reaction (PCR). The RNA samples were then denatured at 65° C. for 10 minutes. Reverse transcription was performed at 42° C. for 60 minutes in a reaction volume of 20 μl containing the following: oligo dT primer (500 ng), Moloney murine leukaemia virus (M-MLV) reverse transcription buffer (50 mmol/L Tris-HCI pH 8.3, 75 mM KCl, 3 mmol/L MgCl2,10 mmol/L dithiothreitol (DTT) (Promega, Southampton Science Park, Southampton, UK), diethylpyrocarbonate (DEPC) treated water (Sigma Aldrich, Dublin, Ireland), deoxyribonucleotide triphosphates (dNTPs) (0.2 mmol/L) (Promega, UK) and 200 U M-MLV reverse transcriptase (Promega, UK). Reverse transcriptase activity was stopped by heating samples at 65° C. for 10 minutes. Control RNA samples, in which no reverse transcriptase was added, were included to confirm that no genomic DNA contamination was present.


PCR


1 μl of the 20 μl RT reaction was then used in the subsequent PCR. PCR was performed in a final volume of 50 μl containing 1.5 mmol/L MgCl2, 20 mmol/L Tris-HCl, 50 mmol/L KCl pH8.3, 1.25 U Taq DNA polymerase (Bioline Ltd. London, UK), 0.2 mM dNTPs and 0.2 μM of each sense and antisense primer. cDNA amplification was carried out by an initial denaturation step of 5 minutes at 95° C. followed by 28-40 cycles of denaturation at 94° C. for 1 min, annealing at 55-60° C. for 1 min and elongation at 72° C. for 30 s-1 min, followed by a final extension step at 72° C. for 10 minutes. 10 μl of each PCR product was then separated by gel electrophoresis on 1-1.5% agarose gels. Products were separated alongside a 100 bp DNA molecular weight ladder (Promega, UK) for sizing.


Microarray Experiments


The concentration and quality of the total RNA were assessed by spectrophotometry (Nanodrop, Nanodrop Technologies, Wilmington, USA) and Bioanalyser (Agilent, Santa Clara, Calif., USA). Reverse Transcription-In vitro transcription (RT-IVT) digoxigenin (DIG) labelling was performed on 0.5 μg total RNA in accordance to the Applied Biosystems Chemiluminescent RT-IVT labelling protocol (Foster City, USA). QC procedures (Nanodrop and Agilent bioanalyser) were carried out on the cRNA samples to confirm the quality and quantity of the cRNA. The 6 DIG labelled cRNA samples were fragmented and subsequently prepared for hybridisation to Applied Biosystems Genome Survey Microarray (version 2) 32,878 probes for 29,098 genes, for 16 hours. Following hybridisation the arrays were stained using the Applied Biosystems Chemiluminescence detection kit, with an anti-DIG antibody-Alkaline Phosphatase conjugate. Interaction of alkaline phosphatase, enhancer and chemiluminescent substrate produced light with an emission maxima of 458 nm. The arrays were then scanned using the Applied Biosystems 1700 Chemiluminescent Microarray Ananlyser. (ABI) (Geneservice, Cambridge UK). Spotfire DecisionSite for Functional Genomics (Goteborg, Sweden), Bioconductor (www.bioconductor.org), Panther (ABI, USA), Genomatix Bibliosphere Pathway (Genomatix Software GmbH, Munich, Germany) were utilised for data analysis. A student t-test was performed on the microarray data and a p value of <0.05 was considered to be statistically significant.


Real-Time Fluorescence PCR Using ABI Prism 7000 Technology


Real-time PCR was performed on a 1/125 dilution of each the 7 PNL and 6 PL myometrial cDNA in triplicate for each transcript, using the Applied Biosystems ABI Prism 7000 sequence Detection System (ABI, USA). The PCR reactions were performed in a final volume of 25 μl containing 12.5 μl Sybr Green PCR Master Mix (ABI, USA), 5 μl diluted cDNA and 0.4 μM of each sense and antisense primer. The final volume of 25 μl was achieved using PCR grade water (Sigma, Ireland). cDNA amplification was performed by an initial step of 50° C. for 2 minutes an initial denaturation step at 95° C. for 10 minutes, followed by 40 cycles of denaturation at 95° C. for 15 seconds, annealing at 60° C. and elongation at 72° C. for 30 seconds each. The sequences of the oligonucleotide primers are indicated in Tables 4 and 5. The probe Ids and the gene/cDNA sequence Ids relate to sequences deposited at the National Centre for Biotechnological Information, Bethesda, Md., USA and are available at www.ncbi.nlm.nih.gov. Fluorescence data was acquired at the end of each PCR cycle. Melting curve analysis was performed by an initial denaturation step of 95° C. for 15 seconds, cooling to 60° C. for 10 seconds, and 95° C. for 15 seconds. Fluorescence was measured continually during the melting curve cycle. Crossing temperatures for the respective reactions from their standard curves were averaged and normalized to the housekeeping gene, β-actin. The average normalised Crossing Temperatures (Ct) of the 7 PNL and the 6 PL myometrial tissue types (PNL v PL) were compared using a Student t test. Results were expressed as normalised mean Ct units±the standard error of the mean (SEM). A P value of <0.05 was considered to be statistically significant. Relative fold changes were then calculated using the difference in the Ct values (x) between the pregnant at-term and the labouring myometrium for each transcript, Relative fold change=2x. All statistical analysis was performed using the SPSS statistical package (Statistical Package for the Social Sciences, v.11, SPSS Inc., Chicago, Ill., USA).


Myometrial Cell Isolation and Culture


Myometrial tissue samples were minced (finely and any fibrous tissue removed) and digested in sterile filtered DMEM (minus calf serum) containing 1 mg/ml collagenase type IA and 1 mg/ml collagenase type XI and 0.1% BSA (Sigma) for 45 minutes. The resulting suspension was vortexed and the nondispersed tissue fragments were separated by filtration of the mixture through sterile gauze layers and individual cells were then collected by centrifugation at 400 g for 10 minutes. Cells were then washed and centrifuged 2 to 3 times in sterile PBS. After washing cells were cultured in SGM-2 medium (Cambrex, Biowhittaker UK Ltd., Wokingham, Berkshire, UK) at 37° C. and 5% CO2. Cells were subcultivated with trypsin/EDTA at a 1:2 or 1:3 split after reaching confluence.


Primary uterine smooth muscle cells were obtained from Cambrex, Biowhittaker, UK UK and cultured in SGM-2 medium (Cambrex, UK) or medium 231 (Cascade Biologics, Inc. Mansfield, Nottinghamshire, NG12 5BR, UK).


Uterine/myometrial smooth muscle cells were characterised for mRNA expression of calponin, and estrogen receptor a and for SMa actin mRNA and protein expression.


Immunofluorescence Microscopy


Primary myometrial cells or primary uterine smooth muscle cells (to passage 8) were cultivated on LabTekII 8 well chamber slides (Nalge Nunc Int., Naperville, Ill., USA) overnight. The samples were fixed in 4% paraformaldehyde for 30 minutes at room temperature. Cells were subsequently incubated with primary antibody, either a 1:25 or 1:50 dilution of Cybr (PSCDBP) (ab2247) goat polyclonal IgG anti-human primary antibody (Abcam Cambridge, UK), TLR2 (N-17 sc8689) goat polyclonal IgG anti-human primary antibody or RGS12(A-14 sc17740) goat polyclonal IgG anti-human primary antibody (Santa Cruz Biotechnology Inc., Heidelberg, Germany) in PBS/1% BSA overnight at 4° C. Samples were rinsed in 1×PBS 3 times and incubated with a 1:400 dilution of Alexa Fluor 488 donkey anti-goat IgG (A11055) (Molecular Probes, Eugene, Oreg., USA) for 1 hour at room temperature and then rinsed in PBS. Control cells were incubated with the secondary antibody alone. The coverslips were then mounted on glass slides with Vectashield mounting medium with DAPI (Vector Laboratories, Burlingame Calif., USA). Fluorescent images were obtained using the Laser Scanning Microscope LSM 510 (confocal microscope) (Carl Zeiss AG, Strasse 22, Oberkocken, Germany) and/or the DP70 fluorescence microscope (Olympus, Tokyo, Japan).


Transmission Electron Microscopy


Fresh myometrial biopsy from an elective caesarean section underwent primary fixation in 2.5% glutaraldehyde/2% paraformaldehyde, were sectioned into smaller segments and secondary fixation was in osmium tetroxide. The samples were dehydrated in alcohol and then placed in epoxypropane and gradually introduced to 100% TAAB resin. The samples in resin were poured into beam capsule moulds and placed in a 60° C. oven overnight to polymerise. Ultrathin section (60-90 nm) were cut from them on the Leica EM FC6 ultramicrotome (Leica, 2345 Bannockburn, Ill., USA). The ultrathin sections were then mounted on nickel grids and incubated with goat polyclonal IgG anti-human primary antibody, RGS12 (A-14 sc17740) overnight. Grids were washed and then incubated in EM rabbit anti-goat IgG (H+L) 10 nm gold particle conjugated secondary antibody (EM-RGHA10-Agar Scientific, Cambridge Road, Essex, UK) for 1 hour. The negative control was incubated without primary antibody. They were stained with uranyl acetate and lead citrate. Visualisation was performed using a Hitachi transmission electron microscope (Hitachi High Technology, Minato-ku, Tokyo, Japan).


Results


Tissue Samples for Microarray and mRNA Expression


For the microarray experiment, biopsies of myometrium were obtained at the time of elective (n=3) and intrapartum (n=3) caesarean section. The reason for elective caesarean section included previous caesarean section (n=3). The reasons for emergency caesarean section were face presentation (n=1), previous classical caesarean section (n=1) and suspected fetal distress (n=1). The mean age of the women was 35.8 years (range, 31-41). All women were multigravida and delivered between 38 and 41 weeks' gestation.


For real-time RT-PCR confirmation analysis, biopsies of myometrium were obtained at the time of elective (n=7) and intrapartum (n=6) caesarean section. The reasons for elective caesarean section included previous caesarean section (n=6) and placenta praevia (n=1). The reasons for emergency caesarean section were face presentation (n=4), suspected fetal distress (n=1) and previous classical caesarean section (n=1). The mean age of the women was 34.83 years (range, 29-41) of whom 2 were primagravida and 11 were multigravida. All women were delivered between 37 and 42 weeks' gestation. There was no significant difference between those undergoing elective or emergency caesarean section in terms of age, gestation or parity.


Microarray Analysis


Microarray analysis of the total RNA from 3 pregnant non-labouring myometrial biopsies and 3 labouring myometrial biopsies resulted in the differential expression of 698 genes, p<0.05 and 105 genes, p<0.01. Table 2 shows some of the upregulated genes at labour, in descending order of fold change. Among the genes chosen for further analysis were Cybr (PSCDBP), ETB (EDNRB), TLR2, FLJ35382, Twist 1 and RGS12. All of the sequences found to be upregulated in pre-term labour in the study are shown in Table 4 while the sequences found to be down-regulated in pre-term labour in the study are shown in Table 5.


RT-PCR


RT-PCR analysis using DNA-freeTM treated RNA demonstrated expression of Cybr (PSCDBP), ETB (EDNRB), TLR2, FLJ35382, Twist 1 and RGS12 and β-actin both in non-labouring and labouring human myometrium (data not shown). The absence of transcripts in reverse transcriptase negative reactions (RT-) confirmed that all products were RNA derived and not generated from contaminating genomic DNA. In order to determine cellular expression, RT-PCR analysis was also performed using DNA-free™ treated RNA from primary human myometrial smooth muscle cells (passage 6) (FIG. 1). Subsequently, quantitative real-time fluorescence RT-PCR was performed.


Real-Time Fluorescence RT-PCR


Relative quantitative expression analysis was performed by real-time RT-PCR. In order to minimise any undue experimental error from sources such as pipetting inaccuracies, analyses of each gene was performed in triplicate. All non-labouring. and labouring myometrial biopsies demonstrated expression of Cybr (PSCDBP), ETB (EDNRB), TLR2, FLJ35382, Twist 1 and RGS12 and β-actin mRNA. RT-PCR product specificity was confirmed using melting curve analysis. Amplification curve crossing points were determined for each gene generated within the initial phase of exponential amplification, per 0.5 μg total RNA in the tissues studied. β-actin expression showed no significant difference between the different tissue types. The averaged crossing temperature (Ct) values for each candidate gene were compared to those for the corresponding β-actin values. Individual gene expression levels showed significant difference between pregnant labouring and non-labouring human myometrium (p<0.05). Ct values for each transcript normalised to β-actin (per 0.5 μg total RNA) were plotted for labouring and non-labouring myometrium, in FIG. 2. Relative fold changes were then calculated using the difference in the Ct values (x) between the pregnant labouring and non-labouring myometrium for each transcript, Relative fold change=2×. A representation of these results is shown in Table 2. The hypothetical protein FLJ35382 showed the greatest relative fold change by real time RT-PCR at labour, 11.3 fold upregulated at labour in comparison to the non-labouring at-term myometrium. Cybr (PSCDBP), TLR2, TWIST 1, ETB (EDNRB) and RGS 12 showed a 9.89, 7.59, 5.74, 5.67 and 5.18 fold, respectively, relative increase in mRNA expression at labour (Table 3). A summary of the fold changes observed using real-time RT-PCR is shown in FIG. 3.


Immunolocalisation Studies


Immunolabelling confocal microscopy was used to determine the localisation of Cybr (PSCDBP) and TLR2 on human primary uterine smooth muscle cells, passage number 5. Cybr (PSCDBP) localised to the cytoplasm of the cell surrounding the nucleus. TLR2 was expressed on uterine smooth muscle cell membrane (FIG. 4).


Transmission Electron Microscopy


Electron micrographs of pregnant non-labouring human uterine smooth muscle are indicated in FIG. 5 where RGS 12 was immunologically detected in human myometrium isolated from pregnant non-labouring myometrium by immunogold transmission electron microscopy, where it localised to the cell nucleus of smooth muscle cell and the cytosol near vacuoles but seemingly not associated with them (FIG. 5b).


Discussion


The expression of certain genes within the human myometrium and also the up-regulation or down-regulation of these genes in the myometrium at labour has been shown for the first time. Data generated from the microarray experiment is in agreement with previously published reports on expression of certain genes in the human myometrium i.e.. the up-regulation of human IL-6 (Osman et al., 2003), phospholipase A2 (Slater et al., 2004), MCP-1 (Esplin et al., 2005) TNFR 11b, and EGR1 (Havelock et al., 2005).


Inflammation associated genes were prominent amongst the differentially expressed genes identified in the labouring myometrium. Within this subset of genes, the up-regulation of TLR-2, Twist 1 and Cybr (PSCDBP) were studied further. Twist-1 and FLJ35382 have previously been associated with pre-term labour. Cybr (also known as CBP, Cytip, or CASP) is an intracellular scaffold protein that has been implicated in intercellular adhesion of lymphoid cells by regulating integrin deactivation and cytoskeletal rearrangements (Tang et al., 2002; Boehm et al., 2003). Although Cybr has been shown to be upregulated in mouse uterine leiomyosarcoma (Ryschich et al., 2006), no information regarding the expression or function of Cybr in the human reproductive system is currently available. Most Cybr functions have been attributed to its interaction with the guanine nucleotide exchange factor (GEF), cytohesin-1 (Geiger et al., 2000). Through this interaction, Cybr regulates cytohesin-1 activation of the ADP-ribosylation factors including Arfl (Tang et al., 2002). ADP-ribosylation factors are small GTP binding proteins that regulate vesicular transport pathways and organization of the actin cytoskeleton during cell migration (Randazzo et al., 2000).


Cybr transcription is up-regulated by cytokines, including IL-2 and IL-12, in cultured lymphocytes, (Tang et al., 2002) and a role in leukocyte trafficking, especially in response to proinflammatory cytokines in stress conditions has been proposed (Coppola et al., 2006). The recent observation that increased Cybr expression results in NFAT-AP-1 activation through regulation of the Vav-JNK/p38 MAPKs signalling pathways has implicated Cybr in.T cell receptor mediated signalling (Chen et al., 2006). The data showed a 10-fold up-regulation of Cybr mRNA expression in the human myometrium at labour. Cybr expression was localised to uterine smooth muscle cells for the first time, using RT-PCR and confocal microscopy. In uterine smooth muscle cells, Cybr appears to localise in a vesicular manner within the cytoplasm and about the nuclear periphery. While the exact function of Cybr in the myometrium remains to be elucidated, our findings suggest the possible involvement of Cybr in the signal transduction mechanisms associated with labour.


Mammalian toll-like receptors (TLRs) consist of a family of 11 receptor subtypes that recognize the molecular patterns of pathogens (Akira, 2001). After engaging the pathogenic patterned ligands, the cytosolic portion of the TLRs recruits adaptor proteins, via a receptor-driven signalling cascade, thus activating the transcription factor NF-κB, leading to the expression of proinflammatory cytokines and chemokines, triggering inflammation (Akira and Takeda, 2004). In addition to their expression on immune cells, TLRs are also expressed on vascular endothelial cells, lung and intestinal epithelial cells, cardiac myocytes, and adipocytes (Akira, 2001). Increasing evidence suggests that TLRs also play an important role in non-infection mediated inflammation via recognition of host-derived, endogenous ‘damage signals’ such as heat shock proteins (Panjwani et al., 2002) and ‘alarmins’ such as the nuclear protein high-mobility group box protein 1 (Park et al., 2004), which are presented as a result of tissue trauma.


Ten TLRs are expressed in human endometrial tissue (Aflatoonian et al., 2006). The TLR2 subtype is found in vaginal epithelium, stromal muscle cells, ectocervix epithelium and blood vessel endothelial cells (Fazeli et al., 2005). Spontaneous labour at term and pre-term delivery with histological chorioamnionitis, regardless of membrane status, is associated with an increased mRNA expression of TLR-2 and TLR-4 in the chorioamniotic membranes (Kim et al., 2004). Interestingly, maternal and fetal polymorphisms of the human TLR-4 gene are associated with spontaneous pre-term labour (V amer and Esplin, 2005). Murine models of inflammation-induced pre-term birth have demonstrated an up-regulation of TLR-2 in the uterus (Elovitz and Mrinalini, 2005) and have implicated TLR4 in mediating the induction of preterm labour (Wang and Hirsch, 2003).


TLRs are responsive to multiple endogenous ligands including fibronectin (Okamura et al., 2001), fibrinogen (Smiley et al., 2001) and surfactant protein A (SP-A) (Guillot et al., 2002). SP-A has been shown to interact with TLR-2 resulting in an alteration of TLR-2 mediated signalling (Murakami et al., 2002). Recently, murine SP-A secreted by the maturing fetal lung has been proposed to act as a trigger for parturition onset by inducing the migration of macrophages to the maternal uterus, where they activate NF-κB resulting in the stimulation of uterine contractility (Condon et al., 2004).


Natural soluble forms of TLR2 (sTLR2) exist, which are shown to be capable of modulating cell activation to bacterial lipopeptides (LeBouder et al., 2003). Although TLR4 expression has been observed in human pregnant myometrial cells (Dallot et al., 2005) no such findings have been reported regarding TLR2. Our findings have demonstrated a 7.59 fold up-regulation of TLR2 in the human myometrium at labour. We have also shown TLR2 expression in uterine smooth muscle cells where it appears to be localised on the plasma membrane and within the cytoplasm. As all the patients included in this study delivered at term, these findings provide evidence for a role for TLR2 in the process of non-infection related normal labour. Many genes were identified to be differentially expressed during this microarray experiment. Among the other genes targeted for further investigation were endothelin-β receptor, regulator of G-protein signalling-12 and the hypothetical protein FLJ35382.


Endothelin-1 (ET-1) is a known mediator of human myometrial contraction in-vitro (Word et al., 1990). It belongs to a family of three 21-amino acid isopeptides (Inoue et al., 1989). ETA and ETB(EDNRB) are two distinct G-protein coupled heptahelical endothelin receptors, ETA is selective for ET-1 (Arai et al., 1990), whereas ETB exhibits similar affinities for all three ET isopeptides (Sakurai et al., 1990). Although both endothelin receptors have been identified in the human myometrium (Breuiller-Fouche et al., 1994), it is thought that only the ETA receptor mediates the contractile effect of ET-1 both in-vivo and in-vitro (Bacon et al., 1995; Heluy et al., 1995; Dallot et al., 2003). The physiological role of the ETB receptor in myometrial tissue remains to be determined.


Under inflammatory conditions the major endothelin receptor subtype expressed in myometrial cells shifts from ETA to ETB(EDNRB), with a concomitant decrease in ET-1 release leading to a loss of ET-1 induced myometrial cell contraction (Breuiller-Fouche et al., 2005). Interestingly, we found for the first time a significant up-regulation of ETB during normal labour, which suggests a role for ETB in non-infectious human labour. Elucidating the functional role of ETB in the normal myometrium should provide a greater insight into endothelin function in pregnancy. The group of proteins known as regulators of G-protein signaling (RGS) are a large and diverse family initially identified as GTPase activating proteins (GAPs) of the Gα-subunit of heterotrimeric G-proteins. At least some RGS proteins can also influence Gα activity through either effector antagonism or by acting as guanine nucleotide dissociation inhibitors (GDIs) (Arshavsky and Pugh, 1998; Hepler, 1999). There are now over 25 mammalian RGSs containing proteins that are reported to carry out a variety of functions, many of which are unrelated to GPCR signaling (Jean-Baptiste et al., 2006).


Such diversity of function is enabled by the variety of RGS protein structure and their ability to interact with other cellular molecules including phospholipids, receptors, effectors and scaffolds. The activity, sub-cellular distribution and expression levels of RGS proteins are dynamically regulated, providing a layer of complexity that has yet to be fully elucidated (Willars, 2006).


RGS12 has GAP activity against Gαi- and Gα0-subunits, and also acts as a GDI of Gαi via a C-terminal GoLoco motif (Kimple et al., 2001). The presence of both a GoLoco and RGS domain within RGS 12 proteins allows for interaction with two Gα-subunits (Hepler et al., 2005). RGS12 interacts with both N-type and Ca(v)2.2 Ca2+ channels (Schiff et al., 2000; Richman et al., 2005).


PDZ-containing RGS12 binds a C-terminal motif found in proteins such as the IL-8 receptor (Snow et al., 1998) and a role for RGS12 in asymmetric cell division has been proposed where it directs cell polarity, mitotic spindle organization and chromosomal segregation (Willard et al., 2004). Human RGS12 splice variants exhibit differential spatiotemporal patterns of expression during postimplantation embryogenesis (Martin-McCaffrey et al., 2005).


There was a >5-fold change in RGS12 mRNA expression between non-labouring and labouring myometrium. Transmission electron microscopy was used to investigate the localisation of RGS12 within myometrial tissue sections. RGS12 appeared to localise to the nucleus and the cytosol of smooth muscle cells within the tissue. This is the first study to identify RGS12 in the human myometrium and to demonstrate the upregulation of an RGS protein during labour. The diversity of RGS protein structure clearly underlies a complex and broad range of physiological roles for this family in the normal myometrium and in labour.


This is the first investigation of these novel 133 genes of which 65 are up-regulated and 68 down-regulated in human myometrium during labour. Many of these genes have not been previously investigated, this is the first study to report their expression in human uterus, more specifically the myometrium.


The words “comprises/comprising” and the words “having/including” when used herein with reference to the present invention are used to specify the presence of stated features, integers, steps or components but does not preclude the presence or addition of one or more other features, integers, steps, components or groups thereof.


It is appreciated that certain features of the invention, which are, for clarity, described in the context of separate embodiments, may also be provided in combination in a single embodiment. Conversely, various features of the invention which are, for brevity, described in the context of a single embodiment, may also be provided separately or in any suitable sub-combination.









TABLE 1





Real time fluorescence PCR oligonucleotide primer sequences

















FLJ35382 sense 5′-CGGAAACGGCAATGGCCTA
Antisense 5′-TGAACTATCAGAGTTGGACCCTT-3′



RefSeq BC07156.3





Cybr sense 5′ATGGCTACCAGACGTGTGTG-3′
Antisense 5′-GTGTTACTGATGCTCCGGTTC-3′


RefSeq nm_004288.3





RGS12 sense 5′-TGTGCTTAGCTGCTTGTGTG-3′
Antisense 5′-TTCCCTTGGAGCCATATTTC-3′


RefSeq nm_002926.2





β-ACTIN sense 5′-GGGCATGGGTCAGAAGGATT-3′
Antisense 5′-AGTTGGTGACGATGCCGTG-3′


Ac M10277





TLR2 sense 5′-GCCTCTCCAAGGAAGAATCC-3′
Antisense 5′-TCCTGTTGTTGGACAGGTCA-3′


Holmlund et al., 2002





Twist 1 sense 5′-CACTGAAAGGAAAGGCATCA-3′ van
Antisense 5′-GGCCAGTTTGATCCCAGTAT-3′


Doorn et al., 2004





ETB sense 5′-GCCAAGGACCCATCGAGAT Fernandez-
Antisense 5′-GAAGTGTGGAGTTCCCGATGAT-3


Durango et al., 2003
















TABLE 2







UPREGULATED GENES IN HUMAN MYOMETRIUM AT LABOUR BY MICROARRAY ANALYSIS











Gene

Fold




Symbol
Gene name
change
Biological process
Panther family name














IL-6
Interleukin 6
45.62
Immune response
Interleukin-6


PLA2G2A
Phospholipase A2
35.3
Lipid catabolism
PhospholipaseA2


CYBR
Pleckstrin homology, Sec 7 and
24.3

Family not named



coiled coil domains, binding



protein


JUNB
Jun B proto-oncogene
14.2
Regulation of transcription
Jun oncogene family


SOCS3
Suppressor of cytokine signalling 3
13.52
Intracellular signalling cascade, regulation of
Suppressor of cytokine





cell growth
signalling-related


CCL2
Chemokine ligand 2
12
Inflammatory response
Small inducible cytokine A


EGR1
Early growth response 1
10.15
Regulation of transcription, DNA-dependent
Early growth response protein


ETB
Endothelin receptor type B
10.14
G-protein signalling, coupled to IP3, negative
G-protein coupled receptor





regulation of adenylate cyclase activity


TLR2
Toll-like receptor 2
9.82
Inflammatory response, immune response
Toll receptor-related


TNFRSF11b
Tumour necrosis factor receptor
9.81
Apoptosis, signal transduction, skeletal
Tumour necrosis factor receptor



superfamily, member 11b,

development
superfamily



osteoprotegrin


FLJ35382
Hypothetical protein FLJ35382
6.13

Splicing factor SF3A60-related
















TABLE 3







REAL TIME RT-PCR VERIFICATION OF THE GENES THAT WERE UPREGULATED AT HUMAN LABOUR
















Normalised Ct

Normalised Ct

Fold



Gene symbol
Gene name
values PNL
SEM
values PL
SEM
change
P value

















FLJ35382
Hypothetical protein FLJ35382
31.9386
0.53683
28.44
0.56120
11.3
0.001


Cybr
Pleckstrin homology, Sec 7 and coiled
31.7486
0.64462
28.4417
0.73835
9.89
0.006



coil domains, binding protein


EGR1
Early growth response 1
28.3729
0.59833
25.2557
0.54164
9
0.004


TLR2
Toll-like receptor 2
32.7371
0.66812
29.8133
0.76257
7.59
0.015


Twist1
Twist homolog 1 (Saethre-Chotzen
28.9843
0.48417
26.4633
0.25868
5.74
0.001



syndrome)


ETB
Endothelin receptor type B
31.4729
0.65560
28.97
0.25149
5.67
0.007


RGS12
Regulator of G-protein signalling 12
36.64
0.45352
34.265
0.53206
5.18
0.006


ZNF511
Zinc finger protein 511
28.275
0.24744
28.275
0.27581
1.6
n.s.
















TABLE 4







Sequences upregulated in human myometrium during labour.











ProbeID
Gene_Name
Gene_Symbol
RefSeq_NM
Gene_ID





167604
solute canier family 25 (mitochondrial carrier; adenine
SLC25A5
NM_001152.1
hCG23187.3



nucleotide translocator), member 5


165836
acyloxyacyl hydrolase (neutrophil)
AOAH
NM_001637.1
hCG17718.2


122148
exosome component 9
EXOSC9
NM_005033.1
hCG38830.3


145225
solute carrier family 30 (zinc transporter), member 7
SLC30A7
NM_133496.3
hCG2028338


175991



hCG2040515


118529
hepatic leukemia factor
HLF
NM_002126.3
hCG32770.3


178298
multiple coagulation factor deficiency 2
MCFD2
NM_139279.3
hCG17035.3


137782



hCG2041436


131915
chemokine (C—C motif) ligand 3-like,
MGC12815; CCL3L1; CCL3
NM_001001437.2
hCG1749202.1



centromeric; chemokine (C—C motif) ligand 3-like



1; chemokine (C—C motif) ligand 3


123062


NM_019042.2
hCG1811543.1


229410


AK097655.1
hCG1994033


183304


NM_017687.2
hCG1781466.2


201478
methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
MCCC2
NM_022132.3
hCG37849.3


235238



hCG2013069


117541
hypothetical protein FLJ20718
FLJ20718
NM_017939.1
hCG24895.3;


191714
hypothetical protein DKFZp586C1924
DKFZp586C1924
NM_032273.2
hCG27674.3;


160014
ring finger protein 138
RNF138
NM_016271.3
hCG2020693


185693



hCG31132.3;


164651
M-phase phosphoprotein 9
MPHOSPH9
NM_022782.2
hCG2016360.1


135238
v-rel reticuloendotheliosis viral oncogene homolog B,
RELB
NM_006509.2
hCG22137.3



nuclear factor of kappa light polypeptide gene enhancer



in B-cells 3 (avian)


200088
interferon-induced protein with tetratricopeptide repeats 5
IFIT5
NM_012420.1
hCG24572.3


193461
oligodendrocyte myelin glycoprotein
OMG
NM_002544.2
hCG27185.2


121114
similar to hypothetical protein FLJ13841
LOC146325
NM_145270.1
hCG1812105.2


167499


AK025692.1
hCG20634.3


659748



hCG1641837.2


116401



hCG40614.2


185493
SCO cytochrome oxidase deficient homolog 2
SCO2; ECGF1
NM_001953.2
hCG1988078.1



(yeast); endothelial cell growth factor 1 (platelet-derived)


141824
hypothetical protein FLJ20647
FLJ20647
NM_017918.3
hCG21045.3


147379
transcription termination factor, RNA polymerase II
TTF2
NM_003594.3
hCG39063.3


176028



hCG1820822.2


182294
calcium channel, voltage-dependent, L type, alpha 1C
CACNA1C
NM_000719.3
hCG27038.3



subunit


150292
chromosome 10 open reading frame 70
C10orf70
NM_018464.1
hCG2024323


131149
interferon, gamma-inducible protein 30
IFI30
NM_006332.3
hCG1777151.3


191139


AX646241.1_CDS_1
hCG2041355


124059
telomeric repeat binding factor (NIMA-interacting) 1
TERF1
NM_003218.2
hCG1992242


138921
dynactin 4 (p62)
DCTN4
NM_016221.2
hCG38619.2


226910
Arylsulfatase G
KIAA1001
NM_014960.2
hCG28461.3;


188718



hCG37261.2


214857
protein predicted by clone 23733
HSU79274
NM_013300.1
hCG1787853.1


131190
Williams-Beuren syndrome chromosome region 5
WBSCR5
NM_032463.1
hCG18033.3;


235029



hCG1988300


226935
homolog of yeast TIM14
TIM14
NM_201261.1
hCG17532.3;


182654
ubiquitin specific protease 44
USP44
NM_032147.1
hCG1642341.3


232022


AK131269.1
hCG37003.3


153907
glycerol-3-phosphate dehydrogenase 2 (mitochondrial)
GPD2
NM_000408.1
hCG40096.3


213481
hemopoietic cell kinase
HCK
NM_002110.2
hCG38810.3


139874
diphtheria toxin receptor (heparin-binding epidermal
DTR
NM_001945.1
hCG45297.2



growth factor-like growth factor)


210342
serine (or cysteine) proteinase inhibitor, clade E (nexin,
SERPINE2
NM_006216.2
hCG21438.2



plasminogen activator inhibitor type 1), member 2


156493
suppressor of cytokine signaling 3
SOCS3
NM_003955.3
hCG1776363.2


141151
matrix metalloproteinase 3
MMP3
NM_002422.2
hCG41473.3


143996
pleckstrin homology, Sec7 and coiled-coil domains,
PSCDBP
NM_004288.3
hCG1640186.3



binding protein


186435
formyl peptide receptor 1
FPR1
NM_002029.3
hCG91957.2


195696
egf-like module containing, mucin-like, hormone
EMR3
NM_032571.2
hCG95683.3



receptor-like 3


161035
egf-like module containing, mucin-like, hormone
EMR2
NM_152918.1
hCG38591.2



receptor-like 2


226719
endothelin receptor type B
EDNRB
NM_003991.1
hCG2026806


107237
toll-like receptor 2
TLR2
NM_003264.2
hCG26980.3


140235
regulator of G-protein signalling 12
RGS12
NM_002926.2
hCG16460.3


187369
similar to signal peptidase complex (18 kD)
LOC90701
NM_033280.1
hCG33729.3


150853
leukocyte immunoglobulin-like receptor, subfamily A
LILRA3
NM_006865.2
Hcg2043692



(without TM domain), member 3


115087
chromosome 21 open reading frame 7
C21orf7
NM_020152.2
hCG401169.3


101645
hypothetical protein BC004921
LOC93349
NM_138402.2
hCG1777418.2


192842
fibroblast growth factor receptor 3 (achondroplasia,
FGFR3
NM_000142.2
hCG19672.3



thanatophoric dwarfism)


141900
hypothetical protein FLJ25416
FLJ25416
NM_145018.2
hCG1730045.1


112476
Ras-related GTP binding D
RRAGD
NM_021244.2
hCG33076.2


125729
dudulin 2
TSAP6
NM_018234.1
hCG18273.3
















TABLE 5







Sequences downregulated in human myometrium during labour.











ProbeID
Gene_Name
Gene_Symbol
RefSeq_NM
Gene_ID














204328



hCG25286.2


419719



hCG2018464


226390
chromosome 19 open reading frame 19
C19orf19
NM_182577.1
hCG1979225.1


166297
fibulin 2
FBLN2
NM_001998.1
hCG1811143.4


158286



hCG16318.3


190632



hCG1685763.3


540707


BC038791.1
hCG2038600


159015


BC026736.1
hCG2040556


206244


NM_018985.1
hCG1748536.2


177216



hCG1803331.1


167268
sine oculis homeobox homolog 6 (Drosophila)
SIX6
NM_007374.1
hCG21921.2


117864



hCG2041179


116349
chromosome 19 open reading frame 12
C19orf12
NM_031448.2
hCG1982738


166191
olfactory receptor, family 10, subfamily H, member 3
OR10H3
NM_013938.1
hCG36736.4


170466
cyclin-dependent kinase 5, regulatory subunit 2 (p39)
CDK5R2
NM_003936.3
hCG15567.2


175654
chromosome 20 open reading frame 12
C20orf12
NM_018152.2
hCG21677.3


143690
growth arrest and DNA-damage-inducible, gamma
GADD45G
NM_006705.2
hCG29916.2


227240


BC028735.2
hCG1988098


220654


AB067491.1
hCG1642373.3


122684
lipase, hormone-sensitive
LIPE
NM_005357.2
hCG21879.3


235607



hCG2031168


144379
F-box protein, helicase, 18
FBXO18
NM_032807.3
hCG24070.4


159559
high-mobility group nucleosomal binding domain 2
HMGN2
NM_005517.1
hCG2032518


231830



hCG1818369.1


153004
hypothetical protein MGC24975
MGC24975
NM_153359.1
hCG1646404.2


199070
cystatin S
CST4
NM_001899.2
hCG1783147.2


204066
sperm associated antigen 11
SPAG11
NM_058207.1
NM_016512.2


134706
basonuclin 2
BNC2
NM_017637.3
hCG27250.3


236627
ribosomal protein L15
RPL15
NM_002948.2
hCG1979382


162965
latent transforming growth factor beta binding protein 4
LTBP4
NM_003573.1
hCG20254.3;


195255



hCG1645909.2


202865
glutathione peroxidase 4 (phospholipid hydroperoxidase)
GPX4
NM_002085.1
hCG21576.3;


194530



hCG1790417.2


231877


BC037807.1
hCG2013141


206559


AX970385.1_CDS_1
hCG1817313.1


703288


AK096096.1
hCG2038677


236910



hCG1747359.2


223897
olfactomedin 1
OLFM1
NM_014279.2
hCG20208.3


131079


AY063455.1
hCG2040885


232316


AK056558.1
hCG2027063


220825


BC028386.2
hCG401292.3


177441
mitochondrial ribosomal protein S27
MRPS27
NM_015084.1
hCG37853.3


172148



hCG1802898.1


232220
phosphatidylserine receptor
PTDSR
NM_015167.1
hCG30900.4;


236646



hCG16340.2


134290



hCG17444.3;


236385



hCG38670.2


155928


AL035419.12_CDS_3
hCG2019858


704848


AL137390.1
hCG1816496.2


10687190
taste receptor, type 2, member 49
TAS2R49
NM_176889.1
hCG2043410


159795
taste receptor, type 2, member 4
TAS2R4
NM_016944.1
hCG1779741.1


171602
Usher syndrome 1C binding protein 1
USHBP1
NM_031941.2
hCG37669.4


234138
hypothetical protein MGC33488
MGC33488
NM_138350.2
hCG22635.2


227473
chromosome 11 open reading frame 9
C11orf9
NM_013279.1
hCG2017022.1


159870
solute carrier family 37 (glycerol-3-phosphate transporter),
SLC37A2
NM_198277.1
hCG38919.3



member 2


162405
Arg/Abl-interacting protein ArgBP2
ARGBP2
NM_003603.3
hCG1787337.1


117668
melanoma antigen, family A, 1 (directs expression of
MAGEA1
NM_004988.3
hCG1742531.2



antigen MZ2-E)


136035
1-aminocyclopropane-1-carboxylate synthase
PHACS
NM_032592.1
hCG1785059.2


146234
HLA-B associated transcript 8
BAT8
NM_025256.4
hCG1811586.1


119173
leucine rich repeat containing 20
LRRC20
NM_018239.2
hCG1812779.1


198305
zinc finger protein 511
ZNF511
NM_145806.2
hCG19136.2


177780
short-chain dehydrogenase/reductase 9
SCDR9
NM_178135.2
hCG16321.4


110402
hypothetical protein FLJ13197
FLJ13197
NM_024614.1
hCG39023.3


129855
olfactory receptor, family 5, subfamily P, member 3
OR5P3
NM_153445.1
hCG1784552.1


110876
guanylate cyclase activator 1A (retina)
GUCA1A
NM_000409.2
hCG2000506


208509
aminomethyltransferase (glycine cleavage system protein T);
AMT; NICN1
NM_032316.2
hCG2001997



nicolin 1


144023
hypothetical protein FLJ22655
FLJ22655
NM_024730.2
hCG1651443.3


226136
hypothetical protein FLJ90166
FLJ90166
NM_153360.1
hCG2018036
















TABLE 6







Sequences upregulated in human myometrium during labour.











ProbeID
Gene_Name
Gene_Symbol
RefSeq_NM
Gene_ID





167604
solute carrier family 25 (mitochondrial carrier; adenine
SLC25A5
NM_001152.1
hCG23187.3



nucleotide translocator), member 5


165836
acyloxyacyl hydrolase (neutrophil)
AOAH
NM_001637.1
hCG17718.2


122148
exosome component 9
EXOSC9
NM_005033.1
hCG38830.3


145225
solute carrier family 30 (zinc transporter), member 7
SLC30A7
NM_133496.3
hCG2028338


175991



hCG2040515


118529
hepatic leukemia factor
HLF
NM_002126.3
hCG32770.3


178298
multiple coagulation factor deficiency 2
MCFD2
NM_139279.3
hCG17035.3


137782



hCG2041436


131915
chemokine (C—C motif) ligand 3-like,
MGC12815; CCL3L1; CCL3
NM_001001437.2
hCG1749202.1



centromeric; chemokine (C—C motif) ligand 3-like



1; chemokine (C—C motif) ligand 3


123062


NM_019042.2
hCG1811543.1


229410


AK097655.1
hCG1994033


183304


NM_017687.2
hCG1781466.2


201478
methylcrotonoyl-Coenzyme A carboxylase 2 (beta)
MCCC2
NM_022132.3
hCG37849.3


235238



hCG2013069


117541
hypothetical protein FLJ20718
FLJ20718
NM_017939.1
hCG24895.3;


191714
hypothetical protein DKFZp586C1924
DKFZp586C1924
NM_032273.2
hCG27674.3;


160014
ring finger protein 138
RNF138
NM_016271.3
hCG2020693


185693



hCG31132.3;


164651
M-phase phosphoprotein 9
MPHOSPH9
NM_022782.2
hCG2016360.1


135238
v-rel reticuloendotheliosis viral oncogene homolog B,
RELB
NM_006509.2
hCG22137.3



nuclear factor of kappa light polypeptide gene enhancer



in B-cells 3 (avian)


200088
interferon-induced protein with tetratricopeptide repeats 5
IFIT5
NM_012420.1
hCG24572.3


193461
oligodendrocyte myelin glycoprotein
OMG
NM_002544.2
hCG27185.2


121114
similar to hypothetical protein FLJ13841
LOC146325
NM_145270.1
hCG1812105.2


167499


AK025692.1
hCG20634.3


659748



hCG1641837.2


116401



hCG40614.2


185493
SCO cytochrome oxidase deficient homolog 2
SCO2; ECGF1
NM_001953.2
hCG1988078.1



(yeast); endothelial cell growth factor 1 (platelet-derived)


141824
hypothetical protein FLJ20647
FLJ20647
NM_017918.3
hCG21045.3


147379
transcription termination factor, RNA polymerase II
TTF2
NM_003594.3
hCG39063.3


176028



hCG1820822.2


182294
calcium channel, voltage-dependent, L type, alpha 1C
CACNA1C
NM_000719.3
hCG27038.3



subunit


150292
chromosome 10 open reading frame 70
C10orf70
NM_018464.1
hCG2024323


131149
interferon, gamma-inducible protein 30
IFI30
NM_006332.3
hCG1777151.3


191139


AX646241.1_CDS_1
hCG2041355


124059
telomeric repeat binding factor (NIMA-interacting) 1
TERF1
NM_003218.2
hCG1992242


138921
dynactin 4 (p62)
DCTN4
NM_016221.2
hCG38619.2


226910
Arylsulfatase G
KIAA1001
NM_014960.2
hCG28461.3;


188718



hCG37261.2


214857
protein predicted by clone 23733
HSU79274
NM_013300.1
hCG1787853.1


131190
Williams-Beuren syndrome chromosome region 5
WBSCR5
NM_032463.1
hCG18033.3;


235029



hCG1988300


226935
homolog of yeast TIM14
TIM14
NM_201261.1
hCG17532.3;


182654
ubiquitin specific protease 44
USP44
NM_032147.1
hCG1642341.3


232022


AK131269.1
hCG37003.3
















TABLE 7







Sequences down-regulated in human myometrium during labour.











ProbeID
Gene_Name
Gene_Symbol
RefSeq_NM
Gene_ID





204328



hCG25286.2


419719



hCG2018464


226390
chromosome 19 open reading frame 19
C19orf19
NM_182577.1
hCG1979225.1


166297
fibulin 2
FBLN2
NM_001998.1
hCG1811143.4


158286



hCG16318.3


190632



hCG1685763.3


540707


BC038791.1
hCG2038600


159015


BC026736.1
hCG2040556


206244


NM_018985.1
hCG1748536.2


177216



hCG1803331.1


167268
sine oculis homeobox homolog 6 (Drosophila)
SIX6
NM_007374.1
hCG21921.2


117864



hCG2041179


116349
chromosome 19 open reading frame 12
C19orf12
NM_031448.2
hCG1982738


166191
olfactory receptor, family 10, subfamily H, member 3
OR10H3
NM_013938.1
hCG36736.4


170466
cyclin-dependent kinase 5, regulatory subunit 2 (p39)
CDK5R2
NM_003936.3
hCG15567.2


175654
chromosome 20 open reading frame 12
C20orf12
NM_018152.2
hCG21677.3


143690
growth arrest and DNA-damage-inducible, gamma
GADD45G
NM_006705.2
hCG29916.2


227240


BC028735.2
hCG1988098


220654


AB067491.1
hCG1642373.3


122684
lipase, hormone-sensitive
LIPE
NM_005357.2
hCG21879.3


235607



hCG2031168


144379
F-box protein, helicase, 18
FBXO18
NM_032807.3
hCG24070.4


159559
high-mobility group nucleosomal binding domain 2
HMGN2
NM_005517.1
hCG2032518


231830



hCG1818369.1


153004
hypothetical protein MGC24975
MGC24975
NM_153359.1
hCG1646404.2


199070
cystatin S
CST4
NM_001899.2
hCG1783147.2


204066
sperm associated antigen 11
SPAG11
NM_058207.1
NM_016512.2


134706
basonuclin 2
BNC2
NM_017637.3
hCG27250.3


236627
ribosomal protein L15
RPL15
NM_002948.2
hCG1979382


162965
latent transforming growth factor beta binding protein 4
LTBP4
NM_003573.1
hCG20254.3;


195255



hCG1645909.2


202865
glutathione peroxidase 4 (phospholipid hydroperoxidase)
GPX4
NM_002085.1
hCG21576.3;


194530



hCG1790417.2


231877


BC037807.1
hCG2013141


206559


AX970385.1_CDS_1
hCG1817313.1


703288


AK096096.1
hCG2038677


236910



hCG1747359.2


223897
olfactomedin 1
OLFM1
NM_014279.2
hCG20208.3


131079


AY063455.1
hCG2040885


232316


AK056558.1
hCG2027063


220825


BC028386.2
hCG401292.3


177441
mitochondrial ribosomal protein S27
MRPS27
NM_015084.1
hCG37853.3


172148



hCG1802898.1


232220
phosphatidylserine receptor
PTDSR
NM_015167.1
hCG30900.4;


236646



hCG16340.2


134290



hCG17444.3;


236385



hCG38670.2


155928


AL035419.12_CDS_3
hCG2019858


704848


AL137390.1
hCG1816496.2









REFERENCES

Aflatoonian, R., E. Tuckerman, S. L. Elliott, C. Bruce, A. Aflatoonian, T. C. Li and A. Fazeli (2006). “Menstrual cycle-dependent changes of Toll-like receptors in endometrium.” Hum Reprod.


Aguan, K., J. A. Carvajal, L. P. Thompson and C. P. Weiner (2000). “Application of a functional genomics approach to identify differentially expressed genes in human myometrium during pregnancy and labour.” Mol Hum Reprod 6(12): 1141-5.


Akira, S. (2001). “Toll-like receptors and innate immunity.” Adv Immunol 78: 1-56.


Akira, S. and K. Takeda (2004). “Toll-like receptor signalling.” Nat Rev Immunol 4(7): 499-511.


Arai, H., S. Hori, I. Aramori, H. Ohkubo and S. Nakanishi (1990). “Cloning and expression of a cDNA encoding an endothelin receptor.” Nature 348(6303): 730-2.


Arshavsky, V. Y. and E. N. Pugh, Jr. (1998). “Lifetime regulation of G protein-effector complex: emerging importance of RGS proteins.” Neuron 20(1): 11-4.


Athayde, N., R. Romero, E. Maymon, R. Gomez, P. Pacora, B. H. Yoon and S. S. Edwin (2000). “Interleukin 16 in pregnancy, parturition, rupture of fetal membranes, and microbial invasion ofthe amniotic cavity.” Am J Obstet Gynecol 182(1 Pt 1): 135-41.


Bacon, C. R., J. J. Morrison, G. O'Reilly, I. T. Cameron and A. P. Davenport (1995). “ETA and ETB endothelin receptors in human myometrium characterized by the subtype selective ligands BQ123, BQ3020, FR139317 and PD151242.” J Endocrinol 144(1): 127-34.


Boehm, T., S. Hofer, P. Winklehner, B. Kellersch, C. Geiger, A. Trockenbacher, S. Neyer, H. Fiegl, S. Ebner, L. Ivarsson, R. Schneider, E. Kremmer, C. Heufler and W. Kolanus (2003). “Attenuation of cell adhesion in lymphocytes is regulated by CYTIP, a protein which mediates signal complex sequestration.” Embo J 22(5): 1014-24.


Breuiller-Fouche, M., V. Heluy, T. Fournier and F. Ferre (1994). “Endothelin receptors: binding and phosphoinositide breakdown in human myometrium.” J Pharmacol Exp Ther 270(3): 973-8.


Breuiller-Fouche, M., C. Moriniere, E. Dallot, S. Oger, R. Rebourcet, D. Cabrol and M. J. Leroy (2005). “Regulation of the endothelin/endothelin receptor system by interleukin-1 {beta} in human myometrial cells.” Endocrinology 146(11): 4878-86.


Bukowski, R., G. D. Hankins, G. R. Saade, G. D. Anderson and S. Thornton (2006). “Labor-associated gene expression in the human uterine fundus, lower segment, and cervix.” PLoS Med 3(6): e169.


Challis, J. R. (2001). “Understanding pre-term birth.” Clin Invest Med 24(1): 60-7.


Charpigny, G., M. J. Leroy, M. Breuiller-Fouche, Z. Tanfin, S. Mhaouty-Kodja, P. Robin, D. Leiber, J. Cohen-Tannoudji, D. Cabrol, C. Barberis and G. Germain (2003). “A functional genomic study to identify differential gene expression in the preterm and term human myometrium.” Biol Reprod 68(6): 2289-96.


Chen, Q., A. Coffey, S. G. Bourgoin and M. Gadina (2006). “Cytohesin binder and regulator augments T cell receptor-induced nuclear factor of activated T Cells. AP-1 activation through regulation of the JNK pathway.” J Biol Chem 281(29): 19985-94.


Chomczynski, P. (1993). “A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples.” Biotechniques 15(3): 532-4, 536-7.


Condon, J. C., P. Jeyasuria, J. M. Faust and C. R. Mendelson (2004). “Surfactant protein secreted by the maturing mouse fetal lung acts as a hormone that signals the initiation of parturition.” Proc Natl Acad Sci USA 101(14): 4978-83.


Coppola, V., C. A. Barrick, S. Bobisse, M. C. Rodriguez-Galan, M. Pivetta, D. Reynolds, 0. M. Howard, M. E. Palko, P. F. Esteban, H. A. Young, A. Rosato and L. Tessarollo (2006). “The scaffold protein Cybr is required for cytokine-modulated trafficking of leukocytes in vivo.” Mol Cell Biol 26(14): 5249-58.


Dallot, E., C. Mehats, S. Oger, M. J. Leroy and M. Breuiller-Fouche (2005). “A role for PKCzeta in the LPS-induced translocation NF-kappaB p65 subunit in cultured myometrial cells.” Biochimie 87(6): 513-21.


Dallot, E., M. Pouchelet, N. Gouhier, D. Cabrol, F. Ferre and M. Breuiller-Fouche (2003). “Contraction of cultured human uterine smooth muscle cells after stimulation with endothelin-1.” Biol Reprod 68(3): 937-42.


Elovitz, M. A. and C. Mrinalini (2005). “Can medroxyprogesterone acetate alter Toll-like receptor expression in a mouse model of intrauterine inflammation?” Am J Obstet Gynecol 193(3 Pt 2): 1149-55.


Esplin, M. S., M. B. Fausett, M. R. Peltier, S. Hamblin, R. M. Silver, D. W. Branch, E. Y. Adashi and D. Whiting (2005). “The use of cDNA microarray to identify differentially expressed labor-associated genes within the human myometrium during labor.” Am J Obstet Gynecol 193(2): 404-13.


Fazeli, A., C. Bruce and D. O. Anumba (2005). “Characterization of Toll-like receptors in the female reproductive tract in humans.” Hum Reprod 20(5): 1372-8.


Geiger, C., W. Nagel, T. Boehm, Y. van Kooyk, C. G. Figdor, E. Kremmer, N. Hogg, L. Zeitlmann, H. Dierks, K. S. Weber and W. Kolanus (2000). “Cytohesin-1 regulates beta-2 integrin-mediated adhesion through both ARF-GEF function and interaction with LFA-1.” Embo J 19(11): 2525-36.


Guillot, L., V. Balloy, F. X. McCormack, D. T. Golenbock, M. Chignard and M. Si-Tahar (2002). “Cutting edge: the immunostimulatory activity of the lung surfactant protein-A involves Toll-like receptor 4.” J Immunol 168(12): 5989-92.


Havelock, J. C., P. Keller, N. Muleba, B. A. Mayhew, B. M. Casey, W. E. Rainey and R. A. Word (2005). “Human myometrial gene expression before and during parturition.” Biol Reprod 72(3): 707-19.


Heluy, V., G. Germain, T. Fournier, F. Ferre and M. Breuiller-Fouche (1995). “Endothelin ETA receptors mediate human uterine smooth muscle contraction.” Eur J Pharmacol 285(1): 89-94.


Hepler, J. R. (1999). “Emerging roles for RGS proteins in cell signalling.” Trends Pharmacol Sci 20(9): 376-82.


Hepler, J. R., W. Cladman, S. Ramineni, S. Hollinger and P. Chidiac (2005). “Novel activity of RGS14 on Goalpha and Gialpha nucleotide binding and hydrolysis distinct from its RGS domain and GDI activity.” Biochemistry 44(14): 5495-502.


Inoue, A., M. Yanagisawa, S. Kimura, Y. Kasuya, T. Miyauchi, K. Goto and T. Masaki (1989). “The human endothelin family: three structurally and pharmacologically distinct isopeptides predicted by three separate genes.” Proc Natl Acad Sci USA 86(8): 2863-7.


Jean-Baptiste, G., Z. Yang and M. T. Greenwood (2006). “Regulatory mechanisms involved in modulating RGS function.” Cell Mol Life Sci 63(17): 1969-85.


Keelan, J. A., M. Blumenstein, R. J. Helliwell, T. A. Sato, K. W. Marvin and M. D. Mitchell (2003). “Cytokines, prostaglandins and parturition—a review.” Placenta 24 Suppl A: S33-46.


Keelan, J. A., M. Coleman and M. D. Mitchell (1997). “The molecular mechanisms of term and preterm labor: recent progress and clinical implications.” Clin Obstet Gynecol 40(3): 460-78.


Keelan, J. A., K. W. Marvin, T. A. Sato, M. Coleman, L. M. McCowan and M. D. Mitchell (1999). “Cytokine abundance in placental tissues: evidence of inflammatory activation in gestational membranes with term and preterm parturition.” Am J Obstet Gynecol 181(6): 1530-6.


Keski-Nisula, L. T., M. L. Aalto, P. P. Kirkinen, V. M. Kosma and S. T. Heinonen (2003). “Myometrial inflammation in human delivery and its association with labor and infection.” Am J Clin Pathol 120(2): 217-24.


Kim, Y. M., R. Romero, T. Chaiworapongsa, G. J. Kim, M. R. Kim, H. Kuivaniemi, G. Tromp, J. Espinoza, E. Bujold, V. M. Abrahams and G. Mor (2004). “Toll-like receptor-2 and -4 in the chorioamniotic membranes in spontaneous labor at term and in preterm parturition that are associated with chorioamnionitis.” Am J Obstet Gynecol 191(4): 1346-55.


Kimple, R. J., L. De Vries, H. Tronchere, C. I. Behe, R. A. Morris, M. Gist Farquhar and D. P. Siderovski (2001). “RGS12 and RGS14 GoLoco motifs are G alpha(i) interaction sites with guanine nucleotide dissociation inhibitor Activity.” J Biol Chem 276(31): 29275-81.


Kumar, M. S., J. A. Hendrix, A. D. Johnson and G. K. Owens (2003). “Smooth muscle alpha-actin gene requires two E-boxes for proper expression in vivo and is a target of class I basic helix-loop-helix proteins.” Circ Res 92(8): 840-7.


LeBouder, E., J. E. Rey-Nores, N. K. Rushmere, M. Grigorov, S. D. Lawn, M. Affolter, G. E. Griffin, P. Ferrara, E. J. Schiffrin, B. P. Morgan and M. O. Labeta (2003). “Soluble forms of Toll-like receptor (TLR)2 capable of modulating TLR2 signaling are present in human plasma and breast milk.” J Immunol 171(12): 6680-9.


Ledingham, M. A., F. C. Denison, S. C. Riley and J. E. Norman (1999). “Matrix metalloproteinases-2 and -9 and their inhibitors are produced by the human uterine cervix but their secretion is not regulated by nitric oxide donors.” Hum Reprod 14(8): 2089-96.


Lindstrom, T. M. and P. R. Bennett (2005). “The role of nuclear factor kappa B in human labour.” Reproduction 130(5): 569-81.


Lopez Bernal, A. (2003). “Mechanisms of labour—biochemical aspects.” Bjog 110 Suppl 20: 39-45.


Maestro, R., A. P. Dei Tos, Y. Hamamori, S. Krasnokutsky, V. Sartorelli, L. Kedes, C. Doglioni, D. H. Beach and G. J. Hannon (1999). “Twist is a potential oncogene that inhibits apoptosis.” Genes Dev 13(17): 2207-17.


Martin-McCaffrey, L., M. D. Hains, G. A. Pritchard, A. Pajak, L. Dagnino, D. P. Siderovski and S. J. D'Souza (2005). “Differential expression of regulator of G-protein signaling R12 subfamily members during mouse development.” Dev Dyn 234(2): 438-44.


Marvin, K. W., J. A. Keelan, T. A. Sato, M. A. Coleman, L. M. McCowan and M. D. Mitchell (1999). “Expression of intercellular adhesion molecule-1 (ICAM-1) in choriodecidua with labour and delivery at term and preterm.” Reprod Fertil Dev 11 (4-5): 255-62.


Murakami, S., D. Iwaki, H. Mitsuzawa, H. Sano, H. Takahashi, D. R. Voelker, T. Akino and Y. Kuroki (2002). “Surfactant protein A inhibits peptidoglycan-induced tumor necrosis factor-alpha secretion in U937 cells and alveolar macrophages by direct interaction with toll-like receptor 2.” J Biol Chem 277(9): 6830-7.


Okamura, Y., M. Watari, E. S. Jerud, D. W. Young, S. T. Ishizaka, J. Rose, J. C. Chow and J. F. Strauss, 3rd (2001). “The extra domain A of fibronectin activates Toll-like receptor 4.” J Biol Chem 276(13): 10229-33.


Olson, D. M. (2003). “The role of prostaglandins in the initiation of parturition.” Best Pract Res Clin Obstet Gynaecol 17(5): 717-30.


Osman, I., A. Young, M. A. Ledingham, A. J. Thomson, F. Jordan, I. A. Greer and J. E. Norman (2003). “Leukocyte density and pro-inflammatory cytokine expression in human fetal membranes, decidua, cervix and myometrium before and during labour at term.” Mol Hum Reprod 9(1): 41-5.


Osmers, R. G., J. Blaser, W. Kuhn and H. Tschesche (1995). “Interleukin-8 synthesis and the onset of labor.” Obstet Gynecol 86(2): 223-9.


Panjwani, N. N., L. Popova and P. K. Srivastava (2002). “Heat shock proteins gp96 and hsp70 activate the release of nitric oxide by APCs.” J Immunol 168(6): 2997-3003.


Pantke, O. A., M. M. Cohen, Jr., C. J. Witkop, Jr., M. Feingold, B. Schaumann, H. C. Pantke and R. J. Gorlin (1975). “The Saethre-Chotzen syndrome.” Birth Defects Orig Artic Ser 11(2): 190-225.


Park, J. S., D. Svetkauskaite, Q. He, J. Y. Kim, D. Strassheim, A. Ishizaka and E. Abraham (2004). “Involvement of toll-like receptors 2 and 4 in cellular activation by high mobility group box I protein.” J Biol Chem 279(9): 7370-7.


Politi, K., M. Szabolcs, P. Fisher, A. Kljuic, T. Ludwig and A. Efstratiadis (2004). “A mouse model of uterine leiomyosarcoma.” Am J Pathol 164(1): 325-36.


Pollard, A. J., C. Sparey, S. C. Robson, A. R. Krainer and G. N. Europe-Finner (2000). “Spatio-temporal expression of.the trans-acting splicing factors SF2/ASF and heterogeneous ribonuclear proteins A1/A1 B in the myometrium of the pregnant human uterus: a molecular mechanism for regulating regional protein isoform expression in vivo.” J Clin Endocrinol Metab 85(5): 1928-36.


Randazzo, P. A., Z. Nie, K. Miura and V. W. Hsu (2000). “Molecular aspects of the cellular activities of ADP-ribosylation factors.” Sci STKE 2000(59): RE1.


Richman, R. W., J. Strock, M. D. Hains, N. J. Cabanilla, K. K. Lau, D. P. Siderovski and M. Diverse-Pierluissi (2005). “RGS12 interacts with the SNARE-binding region of the Cav2.2 calcium channel.” J Biol Chem 280(2): 1521-8.


Romero, R., J. Espinoza, L. F. Goncalves, J. P. Kusanovic, L. A. Friel and J. K. Nien (2006). “Inflammation in preterm and term labour and delivery.” Semin Fetal Neonatal Med 11 (5): 317-26.


Ryschich, E., P. Lizdenis, C. Ittrich, A. Benner, S. Stahl, A. Hamann, J. Schmidt, P. Knolle, B. Arnold, G. J. Hammerling and R. Ganss (2006). “Molecular fingerprinting and autocrine growth regulation of endothelial cells in a murine model of hepatocellular carcinoma.” Cancer Res 66(1): 198-211.


Sakurai, T., M. Yanagisawa, Y. Takuwa, H. Miyazaki, S. Kimura, K. Goto and T. Masaki (1990). “Cloning of a cDNA encoding a non-isopeptide-selective subtype of the endothelin receptor.” Nature 348(6303): 732-5.


Schiff, M. L., D. P. Siderovski, J. D. Jordan, G. Brothers, B. Snow, L. De Vries, D. F. Ortiz and M. Diverse-Pierluissi (2000). “Tyrosine-kinase-dependent recruitment of RGS12 to the N-type calcium channel.” Nature 408(6813): 723-7.


Sharif, M. N., D. Sosic, C. V. Rothlin, E. Kelly, G. Lemke, E. N. Olson and L. B. Ivashkiv (2006). “Twist mediates suppression of inflammation by type I IFNs and Axl.” J Exp Med 203(8): 1891-901.


Slater, D. M., S. Astle, P. R. Bennett and S. Thornton (2004). “Labour is associated with increased expression of type-IIA secretory phospholipase A2 but not type-IV cytosolic phospholipase A2 in human myometrium.” Mol Hum Reprod 10(11): 799-805.


Smiley, S. T., J. A. King and W. W. Hancock (2001). “Fibrinogen stimulates macrophage chemokine secretion through toll-like receptor 4.” J Immunol 167(5): 2887-94.


Snow, B. E., R. A. Hall, A. M. Krumins, G. M. Brothers, D. Bouchard, C. A. Brothers, S. Chung, J. Mangion, A. G. Gilman, R. J. Lefkowitz and D. P. Siderovski (1998). “GTPase activating specificity of RGS12 and binding specificity of an alternatively spliced PDZ (PSD-95/Dlg/ZO-1) domain.” J Biol Chem 273(28): 17749-55.


Sosic, D., J. A. Richardson, K. Yu, D. M. Ornitz and E. N. Olson (2003). “Twist regulates cytokine gene expression through a negative feedback loop that represses NF-kappaB activity.” Cell 112(2): 169-80.


Tanackovic, G. and A. Kramer (2005). “Human splicing factor SF3a, but not SF1, is essential for pre-mRNA splicing in vivo.” Mol Biol Cell 16(3): 1366-77.


Tang, P., T. P. Cheng, D. Agnello, C. Y. Wu, B. D. Hissong, W. T. Watford, H. J. Ahn, J. Galon, J. Moss, M. Vaughan, J. J. O'Shea and M. Gadina (2002). “Cybr, a cytokine-inducible protein that binds cytohesin-1 and regulates its activity.” Proc Natl Acad Sci USA 99(5): 2625-9.


Thisse, B., M. el Messal and F. Perrin-Schmitt (1987). “The twist gene: isolation of a Drosophila zygotic gene necessary for the establishment of dorsoventral pattern.” Nucleic Acids Res 15(8): 3439-53.


Tyson-Capper, A. J., J. Bailey, A. R. Krainer, S. C. Robson and G. N. Europe-Finner (2005). “The switch in alternative splicing of cyclic AMP-response element modulator protein CREM{tau}2{alpha} (activator) to CREM{alpha} (repressor) in human myometrial cells is mediated by SRp40.” J Biol Chem 280(41): 34521-9.


Varner, M. W. and M. S. Esplin (2005). “Current understanding of genetic factors in preterm birth.” Bjog 112 Suppl 1: 28-31.


Wang, H. and E. Hirsch (2003). “Bacterially-induced preterm labor and regulation of prostaglandin-metabolizing enzyme expression in mice: the role of toll-like receptor 4.” Biol Reprod 69(6): 1957-63.


Willard, F. S., R. J. Kimple and D. P. Siderovski (2004). “Return of the GDI: the GoLoco motif in cell division.” Annu Rev Biochem 73: 925-51.


Willars, G. B. (2006). “Mammalian RGS proteins: multifunctional regulators of cellular signalling.” Semin Cell Dev Biol 17(3): 363-76.


Word, R. A., K. E. Kamm, J. T. Stull and M. L. Casey (1990). “Endothelin increases cytoplasmic calcium and myosin phosphorylation in human myometrium.” Am J Obstet Gynecol 162(4): 1103-8.


Young, A., A. J. Thomson, M. Ledingham, F. Jordan, I. A. Greer and J. E. Norman (2002). “Immunolocalization of proinflammatory cytokines in myometrium, cervix, and fetal membranes during human parturition at term.” Biol Reprod 66(2): 445-9.


Youssef et al., 2006 Journal of the Society of Gynecological Investigation 13 (2) 134A


Youssef et al., 2007 Society of Gynecological Investigation 53rd Annual Meeting, Reno, Nev., USA Mar. 14-17, 2007. Abstract Poster 15


Zhang, Y., Y. Zhang and Q. H. Lin (2006). “[Progesterone-modulated proteins in human endometrial cancer cell line Ishikawa].” Nan Fang Yi Ke Da Xue Xue Bao 26(8): 1110-3.

Claims
  • 1. A diagnostic assay for labour or pre-term labour comprising at least one marker cDNA disclosed in Table 4 or Table 5, a mRNA encoded by any of said cDNA, a polypeptide encoded by said cDNA or mRNA, a protein encoded by said cDNA or mRNA or comprising a polypeptide encoded by said cDNA or mRNA or an antibody raised against said polypeptide or protein.
  • 2. An assay as claimed in claim 1 wherein more than one marker is used.
  • 3. An assay as claimed in claim 1 wherein the marker is Cybr (PSCDBP), TLR2, SOCS3, ETB (EDNRB) or RGS12.
  • 4. An assay as claimed in claim 1 wherein the assay is a real-time PCR assay, a customised micro-array assay or a histochemical assay.
  • 5. Use as a diagnostic marker of labour or pre-term labour of at least one marker cDNA disclosed in Table 4 or Table 5, a mRNA encoded by any of said cDNA, a polypeptide encoded by said cDNA or mRNA, a protein encoded by said cDNA or mRNA or comprising a polypeptide encoded by said cDNA or mRNA or an antibody raised against said polypeptide or protein.
  • 6. Use as claimed in claim 5 wherein more than one marker is used.
  • 7. Use as claimed in claim 5 wherein the marker is Cybr (PSCDBP), TLR2, SOCS3, ETB (EDNRB) or RGS12.
  • 8. Use in a method of identifying therapeutic agents which can prolong gestation and/or arrest pre-term labour, of at least one marker cDNA disclosed in Table 4 or Table 5, a mRNA encoded by any of said cDNA, a polypeptide encoded by said cDNA or mRNA, a protein encoded by said cDNA or mRNA or comprising a polypeptide encoded by said cDNA or mRNA or an antibody raised against said polypeptide or protein.
  • 9. Use as claimed in claim 8 wherein more than one marker is used.
  • 10. Use as claimed in claim 8 wherein the marker is Cybr (PSCDBP), TLR2, SOCS3, ETB (EDNRB) or RGS12.
  • 11. A solid support onto which at least one marker cDNA disclosed in Table 4 or Table 5, a mRNA encoded by any of said cDNA, a polypeptide encoded by said cDNA or mRNA, a protein encoded by said cDNA or mRNA or comprising a polypeptide encoded by said cDNA or mRNA or an antibody raised against said polypeptide or protein.
  • 12. A diagnostic kit for labour or pre-term labour comprising at least one marker cDNA disclosed in Table 4 or Table 5, a mRNA encoded by any of said cDNA, a polypeptide encoded by said cDNA or mRNA, a protein encoded by said cDNA or mRNA or comprising a polypeptide encoded by said cDNA or mRNA or an antibody raised against said polypeptide or protein.
  • 13. A method of treatment of pre-term labour, a method of prolonging gestation, or a method of suppressing labour contractility comprising administering to a patient in need of such treatment, an inhibitor of the protein product of a cDNA shown in Table 4, or an agent which can silence a cDNA shown in Table 4 or comprising administering an activator of a cDNA or the protein product of a cDNA shown in Table 5.
  • 14. A method as claimed in claim 13 wherein the agent which silences the gene is an siRNA directed against any of the cDNAs or an antibody directed against the protein product of any of the cDNAs.