Markov Chain Monte Carlo and Exact Logistic Regression

Information

  • Research Project
  • 6703756
  • ApplicationId
    6703756
  • Core Project Number
    R44CA093112
  • Full Project Number
    5R44CA093112-03
  • Serial Number
    93112
  • FOA Number
  • Sub Project Id
  • Project Start Date
    7/20/2001 - 23 years ago
  • Project End Date
    1/31/2006 - 18 years ago
  • Program Officer Name
    KELTY, MIRIAM F.
  • Budget Start Date
    2/17/2004 - 20 years ago
  • Budget End Date
    1/31/2006 - 18 years ago
  • Fiscal Year
    2004
  • Support Year
    3
  • Suffix
  • Award Notice Date
    2/17/2004 - 20 years ago
Organizations

Markov Chain Monte Carlo and Exact Logistic Regression

[unreadable] DESCRIPTION (provided by applicant): Today, software for fitting logistic regression models to binary data belongs in the toolkit of every professional biostatistician, epidemiologist, and social scientist. A natural follow-up to this development is the adoption of exact logistic regression by mainstream biostatisticians and data analysts for any setting in which the accuracy of a statistical analysis based on large-sample maximum likelihood theory is in doubt. Cutting-edge researchers in biometry and numerous other fields have already recognized that it is necessary to supplement inference based on large-sample methods with exact inference for small, sparse and unbalanced data. The LogXact software package developed by Cytel Software Corporation fills this need. It has been used since its inception in 1993 to produce exact inferences for data generated from a wide range fields including clinical trials, epidemiology, disease surveillance, insurance, criminology, finance, accounting, sociology and ecology. In all these applications exact logistic regression was adopted because the limitations of the corresponding asymptotic procedures were clearly recognized in advance by the investigators and the exact inference was computationally feasible. But most of the time it will not be obvious whether asymptotic or exact methods are applicable. Ideally one would prefer to run both types of analyses if there is any doubt about the appropriateness of the asymptotic inference. However, because of the computational limits of the exact algorithms, investigators are currently inhibited from attempting the exact analysis. There is uncertainty about the how long the computations will take and even whether they will produce any results at all before the computer runs out of memory. The current project eliminates this uncertainty by introducing a new generation of numerical algorithms that utilize network based Monte Carlo rejection sampling. The Phase 1 progress report has demonstrated that these new algorithms can speed up the computations by factors of 50 to 1000 relative to what is currently available in LogXact. More importantly they can predict how long a job will take so that the user may decide whether to proceed at once or at a better time. The Phase 2 effort aims to incorporate this new generation of computing algorithms into future versions of LogXact. [unreadable] [unreadable]

IC Name
NATIONAL CANCER INSTITUTE
  • Activity
    R44
  • Administering IC
    CA
  • Application Type
    5
  • Direct Cost Amount
  • Indirect Cost Amount
  • Total Cost
    411387
  • Sub Project Total Cost
  • ARRA Funded
  • CFDA Code
    393
  • Ed Inst. Type
  • Funding ICs
    NCI:411387\
  • Funding Mechanism
  • Study Section
    ZRG1
  • Study Section Name
    Special Emphasis Panel
  • Organization Name
    CYTEL, INC
  • Organization Department
  • Organization DUNS
    183012277
  • Organization City
    CAMBRIDGE
  • Organization State
    MA
  • Organization Country
    UNITED STATES
  • Organization Zip Code
    02139
  • Organization District
    UNITED STATES