Patent Application
20210400980
The invention relates to a method of promoting growth in a photosynthetic organism. The invention also relates to metal complexes, to precursor compounds of the metal complexes for use in the method, and to formulations comprising the metal complexes or precursor compounds. The invention is also concerned with a method of preparing the metal complexes.
One of the major challenges facing society today is to provide sufficient food, fuel and fibre for a rapidly growing world population. There is a need to provide more efficient and effective agricultural methods for producing foodstuff in an environmentally, socially and economically sustainable way. One way of improving the yields of crops is by modifying the traits of the crops. However, such approaches show little remaining potential for further improvement and alternative routes are required to obtain further yield growth.
Plants rely on photosynthesis to convert light energy into chemical energy, which is used to make cellulose for cell walls and proteins for growth and repair. Photosynthesis is surprisingly inefficient. Typically, the conversion of light energy into stored biomass within photosynthetic bacteria, green algae and higher plants is only of the order 1 to 2% efficient. The enzyme ribulose-1,5-biphosphate carboxylase/oxygenase (RuBisCO; referred to herein as “rubisco”) catalyses the integration of CO2 into organic carbon for biomass (i.e. carbon fixation) by the process of photosynthesis. Rubisco is one of the slowest known enzymes with a typical catalytic rate of 3 to 10 molecules per second. It is also highly unspecific to CO2. Its activity can be inhibited through a competing reaction with O2 called photorespiration, which decreases the efficiency of carbon fixation by up to 50%. The activity of rubisco is therefore a significant bottleneck for photosynthetic efficiency.
In nature, some plants and cyanobacteria have developed carbon concentrating mechanisms that concentrate CO2 around rubisco. An increased local concentration of CO2 around rubisco can improve photosynthetic activity. Within these mechanisms, carbonic anhydrase (“CA”), more specifically R-CA, is used to transport and produce CO2 for concentrating carbon around rubisco's active site. CA is the enzyme that catalyses the reversible interconversion between CO2 and HCO3
(1)
Some crops, such as rice, do not have a carbon concentrating mechanism and have low photosynthetic efficiencies. It is possible to improve the growth rates of such crops by enriching the local environment with CO2 (J. A. Bunce; Crop Science, 54 (2014), 1744; and S. von Caemmerer et al., Science, 336 (2012), 1671). It is thought that this reduces the effects of the competing reaction with O2.
WO 2012/125737 A2 describes a method of increasing the efficiency of carbon dioxide fixation in a photosynthetic organism. The method involves the creation and use of a transgenic plant that overexpresses a membrane bicarbonate transporter to assist carbonic anhydrase as part of the carbon fixation process.
Mammalian α-CA preferentially catalyses the hydration reaction (i.e. conversion of CO2 and H2O into HCO3
K. Nakata et al. (J. Inorg. Biochem., 89 (2002), 255-266) describes a kinetic study of CO2 hydration using a water-soluble zinc complex with a nitrilotris(2-benzimidazolylmethyl-6-sulfonate) ligand.
In a first aspect, the invention provides a method of promoting growth in a photosynthetic organism, such as in a plant, an algae or cyanobacteria. The method comprises treating a photosynthetic organism with a metal complex or a precursor thereof. The metal complex comprises a metal selected from the group consisting of zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni) and iron (Fe). The metal complex further comprises a bidentate or tridentate ligand.
The ligand may have a structure represented by formula (Ia):
wherein:
the linker has a chain length of at least 3 atoms between G1 and G2;
each of G1 and G2 is a group for coordinating to the metal and each of G1 and G2 independently comprises a heterocyclic group as represented by formula (IIa):
and wherein ring1 is directly bonded to the linker; and X is a heteroatom selected from nitrogen, sulfur and oxygen. The wavy line attached to ring1 denotes the point of attachment of G1 or G2 to the linker. Ring1 is not directly bonded to the linker at X. With reference to “X”, the terms “X1” and “X2” may be used herein to denote the individual identity of the moiety at position “X” for G1 and G2 respectively.
Previous studies have focused on using synthetic metal complexes as mimics of carbonic anhydrases for capturing carbon dioxide. These complexes hydrate carbon dioxide and shift the equilibrium shown in equation (1) above to the right in favour of forming HCO3
The inventors have surprisingly discovered a class of synthetic metal complexes that favour the dehydration reaction in equation (1) (i.e. conversion of HCO3
In a second aspect, the invention provides a metal complex, which comprises a metal selected from the group consisting of zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni) and iron (Fe), and a ligand having a structure represented by formula (Ia) above, wherein:
the linker has a chain length of at least 3 atoms between G1 and G2;
each of G1 and G2 is a group for coordinating to the metal and each of G1 and G2 independently comprises a heterocyclic group as represented by formula (IIa) above, and wherein ring1 is directly bonded to the linker; and X is a heteroatom selected from nitrogen, sulfur and oxygen.
In a third aspect, the invention provides a method of preparing a metal complex. The method comprises:
mixing in solution (a) a salt of a metal selected from the group consisting of zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni) and iron (Fe) with (b) a ligand having a structure represented by formula (Ia) above, wherein:
the linker has a chain length of at least 3 atoms between G1 and G2;
each of G1 and G2 is a group for coordinating to a metal of the metal complex and each of G1 and G2 independently comprises a heterocyclic group as represented by formula (IIa) above, and wherein ring1 is directly bonded to the linker; and X is a heteroatom selected from nitrogen, sulfur and oxygen.
In a fourth aspect, the invention provides a formulation for treating a photosynthetic organism. The formulation comprises a metal complex or a precursor thereof in accordance with the invention, such as in the first to third aspects of the invention.
In a fifth aspect, the invention provides a ligand. The ligand is for use in preparing a metal complex in accordance with the invention. The ligand has a structure as described above, specifically the ligand is represented by formula (Ia):
wherein:
the linker has a chain length of at least 3 atoms between G1 and G2;
each of G1 and G2 is a group for coordinating to a metal of the metal complex and each of G1 and G2 independently comprises a heterocyclic group as represented by formula (IIa):
and wherein ring1 is directly bonded to the linker; and X is a heteroatom selected from nitrogen, sulfur and oxygen. The wavy line attached to ring1 denotes the point of attachment of G1 or G2 to the linker. Ring1 is not directly bonded to the linker at X.
The invention also relates to several uses of the metal complex or a precursor thereof as described in the second aspect of the invention or the formulation as described in the fourth aspect of the invention.
In a sixth aspect, the invention relates to the use of the metal complex or a precursor thereof or the formulation to (i) promote growth of a photosynthetic organism and/or (ii) promote or assist in the production of biomass in a photosynthetic organism, and/or (iii) to assist photosynthetic carbon fixation in a photosynthetic organism.
As used herein and unless specified to the contrary, the following terms have the meaning indicated below.
The term “ring atoms” as used herein refers to the atoms in the framework of the ring(s). Thus, for example, the ring atoms of N-methylimidazole are the two nitrogen atoms and the three carbon atoms that form the imidazole ring framework. For N-methylbenzimidazole, the ring atoms are the two nitrogen atoms and the seven carbon atoms that form the benzimidazole ring framework.
The term “fluorophore group” as used herein refers to a substituent or group that is a fluorescent moiety that can re-emit light upon light excitation. Fluorophore groups typically contain several aromatic groups or are planar or cyclic molecules with a plurality of π bonds. In general, the fluorophore group is a small, organic moiety having from 20 to 100 atoms. Such groups or substituents are known in the art.
The fluorophore group may be a xanthene derivative, a cyanine derivative, a squaraine derivative or a ring-substituted squaraine, a naphthalene derivative, a coumarin derivative, an oxadiazole derivative, an anthracene derivative, a pyrene derivative, an oxazine derivative, an acridine derivative, an arylmethine derivative, a rhodol derivative, a tetrapyrrole derivative, a BODIPY™ derivative, a resorufin derivative or a quinine derivative. The xanthene derivative may, for example, be a fluorescein group, a rhodamine group (e.g. X-rhodamine, rhodamine B), an Oregon green group, an eosin group or a Texas red group. The cynanine derivative may, for example, be a cyanine group, an indocyanine green group, an oxacarbocyanine group, a thiacarbocyanine group, or a merocyanine group. The squaraine derivative or the ring-substituted squaraine may, for example, be a Seta™ group, a SeTau™ group, or a square dye™ group (e.g. squarylium dye III). The naphthalene derivative may, for example, be a dansyl group or a prodan group. The coumarin derivative may, for example, be a hydroxycoumarin group, an aminocoumarin group or a methoxycoumarin group. The oxadiazole derivative may, for example, be a pyridyloxazole group, a nitrobenzoxadiazole group or a benzoxadiazole group. The anthracene derivative may, for example, be an anthraquinone group (e.g. DRAQ5™, DRAQ7™, CyTRAK™ Orange). The pyrene derivative may, for example, be a cascade blue group. The oxazine derivative may, for example, be a Nile red group, a Nile blue group, a cresyl violet group, or an oxazine 170 group. The acridine derivative may, for example, be a proflavine group, an acridine orange group, or an acridine yellow group. The arylmethine derivative may, for example, be an auramine group, a crystal violet group, or a malachite green group. The tetrapyrrole derivative may, for example, be a porphin group, a phthalocyanine group or a bilirubin group. The BODIPY™ derivative typically comprises a 4,4-difluoro-4-bora-3a,4a-diaza-s-indacene group. The resorufin derivative may comprise a 7-hydroxy-3H-phenoxazin-3-one group.
When the metal complex or ligand comprises a fluorophore group, then the fluorophore group is present as a substituent component of the ligand. The fluorophore group is attached to a coordinating group or linker of the ligand, preferably the coordinating group.
The term “precursor thereof” as used herein in the context of the metal complex refers to the ligand in accordance with the invention, such as in the fifth aspect of the invention, optionally in combination with a salt of the metal of the metal complex (i.e. zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni) and iron (Fe)). The metal complex may be formed in situ by treating a photosynthetic organism with a precursor of the metal complex. Photosynthetic organisms, such as plants or algae, or the environment surrounding the organism, such as soil or water, may contain zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni), iron (Fe) or compounds thereof. By applying the ligand to the photosynthetic organism or its surrounding environment, a metal complex may be formed in situ within the photosynthetic organism or the surrounding environment for uptake into the organism.
The term “water solubilising group” as used herein refers to a substituent or functional group that assists with solubilising, or imparts solubility to, the metal complex in water or an aqueous solution at a temperature of 20° C. under atmospheric pressure. Water solubilising groups are known in the art. The water solubilising group may be formed in situ when the metal complex is added to water or an aqueous solution. For example, the metal complex may comprise an ester group as a water solubilising group, which is part of the ligand. The ester group itself may not assist in solubilising the metal complex, but it may be hydrolysed in water to form a carboxylate group. The carboxylate group can assist in solubilising the metal complex in water or an aqueous solution.
The water solubilising group may comprise, or consist of, a group selected from a hydroxy group (—OH) or a salt or an ester thereof; a carboxylic acid group (—COOH) or a conjugate base, an ester, an anhydride or an amide thereof; an amine group (—N(Ra)2) or a conjugate acid, an amide, a carbamate, a carbamide or a sulfonamide thereof; a sulfonic acid group (—SO3H) or a conjugate base, a sulfonic ester, a sulfonic anhydride or a sulfonamide thereof; a phosphonic acid group (—P(O)(OH)2) or a conjugate base or a phosphonate ester thereof; a phosphoric acid group (—O—P(O)(OH)2) or a conjugate base or a phosphate ester thereof; and a polyethylene glycol group (—[OCH2CH2]n—OH or —CH2CH2—[OCH2CH2]n—OH). For the amine group, each Ra may independently be selected from hydrogen (—H) and C1 to C3 alkyl.
The term “heterocyclic group” as used herein generally refers to a stable ring radical comprising a total of 3 to 18 ring atoms (i.e. 3 to 18 membered ring), which comprises 2 to 12 carbon atoms and from 1 to 6 heteroatoms selected from nitrogen, oxygen and sulfur. Unless specifically stated otherwise, the heterocyclic group may be a monocyclic, bicyclic, tricyclic or tetracyclic ring system. When the heterocyclic group is polycyclic, then the heterocyclic group may include a fused or a bridged ring system. The heterocyclic group may be aromatic, partially saturated or fully saturated.
The “heterocyclic group”, unless otherwise stated in the specification, may be optionally substituted by one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy and C3 to C8 carbocyclyloxy.
The term “alkyl” as used herein refers to a straight or branched hydrocarbon chain radical consisting of carbon and hydrogen atoms, and containing no unsaturation. A “C1 to C6 alkyl” group contains one to six carbon atoms. Unless stated otherwise specifically in the specification, an alkyl group may be optionally substituted by one or more substituents selected from C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy and C3 to C8 carbocyclyloxy.
The term “fluoroalkyl” as used herein, such as fluoro-(C1 to C6 alkyl), refers to an alkyl group or radical as defined above that is substituted by one or more fluoro groups, such as, for example, trifluoromethyl, difluoromethyl, fluoromethyl, 2,2,2-trifluoroethyl, 1-fluoromethyl or 2-fluoroethyl.
The term “alkenyl” as used herein refers to a straight or branched hydrocarbon chain radical group consisting of carbon and hydrogen atoms, and containing at least one carbon-carbon double bond. The term “alkynyl” as used herein refers to a straight or branched hydrocarbon chain radical group consisting of carbon and hydrogen atoms, containing at least one carbon-carbon triple bond.
The term “halo” or “halogen” as used herein refers to a bromo (—Br), chloro (—Cl), fluoro (—F) or an iodo (—I) substituent. The term “cyano” refers to the —CN group. The term “nitro” refers to the —NO2 group.
The term “aryl” as used herein refers to a radical derived from an aromatic monocyclic or polycyclic hydrocarbon ring system by removing a hydrogen atom from a ring carbon atom. The aromatic monocyclic or polycyclic hydrocarbon ring system contains only hydrogen atoms and carbon atoms, where at least one of the rings in the ring system is fully unsaturated (i.e. it contains a cyclic, delocalized [4n+2] π—electron system in accordance with the Hückel theory). The ring system from which aryl groups may be derived include, for example, benzene, indane, indene, tetralin and naphthalene.
The term “carbocyclyl” as used herein refers to a stable non-aromatic monocyclic or polycyclic hydrocarbon radical consisting of carbon and hydrogen atoms, which may include fused or bridged ring systems. The carbocyclyl group is attached to the rest of the molecule by a single bond. The carbocyclyl group may be saturated or unsaturated. A fully saturated carbocyclyl radical may be referred to as a “cycloalkyl” group. Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, and cyclooctyl. An unsaturated carbocyclyl group may be referred to as a “cycloalkenyl” group. Examples of monocyclic cycloalkenyl groups include cyclopentenyl, cyclohexenyl, cycloheptenyl, and cyclooctenyl. Polycyclic carbocyclyl groups include adamantyl, norbornyl (i.e. bicyclo[2.2.1]heptanyl) and norbornenyl groups.
The term “alkoxy” as used herein refers to a radical bonded through an oxygen atom of the formula —O-alkyl, where the alkyl group is defined above. The term “aryloxy” as used herein refers to a radical bonded through an oxygen atom of the formula —O-aryl, where the aryl group is defined above. The term “carbocyclyloxy” as used herein refers to a radical bonded through an oxygen atom of the formula —O-carbocyclyl, where the carbocyclyl group is defined above.
The terms “a” or “an” have an open meaning and when used in relation to a feature allow one or more of that feature to be present. As such, the terms “a” or “an” include “one or more” and “at least one” and can be used interchangeably therewith.
The term “comprises” or “comprising” includes the terms “consisting essentially” or “consisting”, and can be used interchangeably therewith.
The invention provides a method of promoting growth in a photosynthetic organism, such as in a plant, an algae or a cyanobacteria. The method of promoting growth in photosynthetic organism can be a method for increasing the production of the photosynthetic organism.
Increasing the production of the photosynthetic organism in the context of the invention can be an increase of number, size and/or weight of the photosynthetic organism (e.g. an increase in the number, size and/or weight of a plant or its flowers, seeds and/or fruits) compared to a photosynthetic organism that has not been treated in accordance with the method of the invention.
The method may improve the production of a photosynthetic organism, such as compared to an untreated photosynthetic organism.
The method may produce at least one of the following effects: an increase in the overall yield of the photosynthetic organism; an increase in the number, size and/or weight of the photosynthetic organism; an increase in the number, size and/or weight of a reproductive structure of the photosynthetic organism (e.g. flower of a plant); an increase in the number, size and/or weight of a seed bearing structure (e.g. fruit of a plant) or the seeds of photosynthetic organism.
The method comprises treating the photosynthetic organism with a metal complex or a precursor thereof. For the avoidance of doubt, any reference to treating a photosynthetic organism with a metal complex or precursor thereof includes treating the photosynthetic organism with a formulation in accordance with the fourth aspect of the invention.
Generally, the method comprises treating the photosynthetic organism with an effective amount of the metal complex or the precursor thereof. The effective amount will depend on the type of photosynthetic organism and the environment in which it is produced.
The treatment with a metal complex or a precursor thereof may be repeated, such as repeated over a regular time interval (e.g. daily, weekly or monthly), such as 3 times a week.
The step of treating the photosynthetic organism typically involves contacting the photosynthetic organism with the metal complex or the precursor thereof.
The metal complex or a precursor thereof can be used to generate an increase in the local concentration of carbon dioxide under plant physiological conditions. An increase in carbon dioxide concentration around the active site of rubisco can result in an increase in rubisco photosynthetic activity, which can in turn produce an increase in crop growth.
In comparison to, for example, other approaches for increasing crop growth, the invention does not require the use of genetically modified organisms, such as genetically modified plants. Furthermore, the synthetic metal complexes or ligand precursors thereof are relatively small and are easily characterizable molecules compared to approaches involving the use of biomolecules.
When the photosynthetic organism is treated with the metal complex or a precursor thereof, it is preferred that the photosynthetic organism has not reached maturity (i.e. is fully grown). Thus, the photosynthetic organism may be part grown.
After treating the photosynthetic organism with a metal complex or a precursor thereof, the method may further comprise a step of growing the photosynthetic organism, such as growing the photosynthetic organism to maturity.
The photosynthetic organism can be a natural photosynthetic organism or a transgenic photosynthetic organism.
The photosynthetic organism may be a plant, an algae or a cyanobacteria. It is preferred that the photosynthetic organism is a plant.
The plant may be treated at the seed stage, during germination or during its growth phase. It is preferable to treat the plant during its growth phase.
The plant may be selected from corn, peanut, soybean, a cucurbita, a cruciferous vegetable, cotton, beets, rice, sorghum, sugar beet, wheat, barley, rye, sunflower, tomato, sugarcane, tobacco and oats.
Examples of cucurbita include squash, pumpkin and gourd. Examples of cruciferous vegetables include horseradish, land cress, Ethiopian mustard, kale, Collard greens, Chinese broccoli, cabbage, savoy cabbage, brussels sprouts, kohlrabi, broccoli, broccoflower, broccoli Romanesco, cauliflower, wild broccoli, bok choy, komatsuna, mizuna, rapini (broccoli rabe), choy sum (flowering cabbage), Chinese cabbage, napa cabbage, turnip root, rutabaga (swede), Siberian kale, canola/rapeseed, wrapped heart mustard cabbage, mustard seeds, white mustard seeds, black mustard seeds, tatsoi, wild arugula, arugula (rocket), field pepperweed, maca, garden cress, watercress, radish, daikon and wasabi.
The plant may be a transgenic plant that confers, for example, tolerance to a particular herbicide or combination of herbicides; increased disease resistance; enhanced tolerance to insects, drought or stress; and/or enhanced yield.
The plant may be a C3 plant, a C4 plant or a CAM plant. It is preferred that the plant or seed of the plant is a C3 plant.
Typically, the C3 plant is selected from the group consisting of tobacco; a cereal (e.g. wheat, rice or barley); beans (e.g. mung bean, kidney bean or pea); a starch-storing plant (e.g. potato, cassava or sweet potato); an oil-storing plant (e.g. soybean, rape, sunflower or cotton plant); a vegetable (e.g. tomato, cucumber, eggplant, carrot, hot pepper, Chinese cabbage, radish, water melon, cucumber, melon, crown daisy, spinach, cabbage or strawberry); a garden plant (e.g. chrysanthemum, rose, carnation or petunia); Arabidopsis; and a tree. It is preferred that the C3 plant is a vegetable.
The algae may be selected from an edible seaweed and a Chlamydomonas algae. Edible seaweed may be a red algae, a green algae or a brown algae. Red algae include, for example, carola, carrageen moss, dulse, eucheuma, gelidiella, ogonori, grapestone, hypnea, Irish moss, laver, gim and nori. Green algae include, for example, chlorella, gutweed, sea grapes and sea lettuce. Brown algae include, for example, kelp, such as arame, badderlocks, cochayuyo, ecklonia cava, kombu, oarweed, sea palm, sea whip, sugar kelp, wakame and hiromi; fucales, such as bladderwrack, channelled wrack, Hijiki or Hiziki, limu kala, sargassum, spiral wrack, thongweed; and ectocarpales, such as mozuku.
In general, when the photosynthetic organism is a plant or an algae, the step of treating the photosynthetic organism with a metal complex or a precursor thereof may be a step of:
The surrounding environment may be a circle having a radius of no more than 10 cm, preferably no more than 5 cm, with the plant or algae at its centre. For a plant, the metal complex or a precursor thereof may be applied to the soil.
When the photosynthetic organism is a plant, the metal complex or the precursor thereof may be applied to aerial parts of the plant (e.g. leaves) or to the underground parts of the plant (e.g. roots). The metal complex or a precursor thereof may be applied to the soil (e.g. the surrounding environment of the plant), such as by spraying an aqueous solution of the metal complex or a precursor thereof onto the soil. This will allow uptake via the roots of the plant.
It is preferred that the metal complex or a precursor thereof is directly applied to the plant or the algae.
The metal complex or a precursor thereof can be applied to the plant or algae by spraying a solution of the metal complex or a precursor thereof onto the plant or the algae or the surrounding environment of the plant or the algae.
The seed can be coated using a variety of methods known in the art. For example, the step of coating a seed of the plant can comprise (i) spraying a solution of the metal complex or a precursor thereof onto the seed while agitating the seed, such as in a tumbler or a pan granulator, or (ii) dipping or soaking the seed in a solution of the metal complex or a precursor thereof, such as for a period of time to ensure that a sufficient amount of the metal complex or the precursor thereof is absorbed by or coated onto the seed.
Generally, the solution of the metal complex or a precursor thereof is an aqueous solution.
As mentioned above, the metal complex may be formed in situ within the photosynthetic organism or its surrounding environment for uptake into the photosynthetic organism.
The solution of the precursor may comprise a solution of the ligand optionally in combination with a metal salt for preparing the metal complex.
In general, it is preferred that the photosynthetic organism is treated with the metal complex (i.e. not a precursor of the metal complex).
The invention also relates to a metal complex. The metal of the metal complex is preferably a metal ion. The metal ion of the metal complex may have an oxidation state of +1, +2 or +3. It is preferred that the metal ion of the metal complex has an oxidation state of +2. Such an oxidation state is preferred because the carbonic anhydrase family of metalloenzymes generally comprise a metal ion in the +2 oxidation state.
The metal or the metal of the metal ion is selected from the group consisting of zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni) and iron (Fe). More preferably, the metal is selected from the group consisting of zinc (Zn), cobalt (Co) and copper (Cu). It is preferred that the metal is zinc (Zn), more preferably Zn2+ (i.e. a zinc ion in the +2 oxidation state).
The metal complex comprises a ligand, which is a bidentate or tridentate ligand. For the avoidance of doubt, the ligand is not a macrocyclic ligand.
Typically, the metal complex has a coordination number (CN) of from 4 to 6. More preferably, the metal complex has a coordination number of 4 or 5. By way of illustration, when the coordination number (CN) is 4 and the ligand is a tridentate ligand, then a second ligand, in addition to the tridentate ligand, will be coordinated to the metal or metal ion. Thus, the metal complex may comprise one or more ligands, in addition to the bidentate or tridentate ligand, within its coordination sphere.
The metal complex may comprise a second ligand. This second ligand may, for example, be a solvent molecule, such as a water. The second ligand is preferably not a bidentate ligand or a tridentate ligand.
In principle, the coordination geometry of the metal complex may be tetrahedral (e.g. CN=4), square planar (e.g. CN=4), trigonal bipyramidal (e.g. CN=5), square pyramidal (e.g. CN=5), octahedral (e.g. CN=6) or trigonal prismatic (e.g. CN=6). It is preferred that the coordination geometry of the metal complex is tetrahedral (e.g. CN=4) or trigonal bipyramidal (e.g. CN=5).
Typically, the ligand has a structure as represented by formula (Ia):
The linker has a chain length of at least 3 atoms between G1 and G2. Typically, the linker has a chain length of 3 to 5 atoms between G1 and G2. Thus, ring1 of G1 and ring1 of G2 is separated by a chain of at least 3 atoms (e.g. 3 to 5 atoms) in length. It is preferred that the linker has a chain length of 3 atoms.
Each of G1 and G2 is a group for coordinating to the metal or metal ion of the metal complex. The linker restricts the coordination geometry (e.g. bite angle) of each of G1 and G2 to the metal. It also provides a steric barrier on one side of the metal, which means that bicarbonate anions (HCO3
In general, the ligand may comprise a water solubilising group and/or a fluorophore group. Each of the water solubilising group and the fluorophore group may independently be bonded to the linker or to a group for coordinating to the metal or metal ion (e.g. G1, G2, or G3).
Some metal complexes may be insoluble in water or aqueous solutions. The inclusion of a water solubilising group as part of the ligand is intended to improve the solubility of the metal complex in comparison to an analogous metal complex without the water solubilising group.
The effect of treating a photosynthetic organism with a metal complex or a precursor thereof can be studied by the inclusion of a fluorophore group or a radio label. Excitation of the fluorophore group can, for example, provide useful experimental information relating to the location and concentration of the metal complex or a precursor thereof within the photosynthetic organism or its surrounding environment.
In general, when the ligand comprises a fluorophore group, then it is preferred that the ligand has a single type (i.e. only one type) of fluorophore group.
Typically, the group(s) for coordinating to the metal or metal ion (e.g. G1, G2 and/or G3) comprise(s) the fluorophore group. It is preferred that each of G1, G2 and G3 comprise(s) the same fluorophore group. The use of the same fluorophore group on G1, G2 and/or G3 can increase the fluorescent signal, which can aid tracking. It is also easier to synthesise symmetrical ligands having the same fluorophore group.
When the ligand comprises a water solubilising group, it is preferred that the group(s) for coordinating to the metal or metal ion (e.g. G1, G2 and/or G3) only comprise(s) the fluorophore group(s). Thus, it is preferred that the linker does not comprise a water solubilising group.
The metal complex has a structure that may be represented by formula (IIIa):
where M is the metal as defined above and n is 1, 2 or 3, preferably n is 2. Each of G1 and G2 is coordinated to the metal.
When the ligand comprises only two groups for coordinating to the metal, namely G1 and G2, then the ligand is typically a bidentate ligand or it may be a tridentate ligand. The ligand may be a tridentate ligand when the linker comprises a coordinating atom, such as when A in formula (Ic) (see below) is selected from —O—, —S—, and —NE1-.
The ligand may have a structure as represented by formula (Ib):
wherein G3 is a group for coordinating to the metal and comprises a heterocyclic group as represented by formula (IIa):
wherein ring1 is directly bonded to the linker; and X is a heteroatom selected from the group consisting of nitrogen, sulfur and oxygen. With reference to “X”, the term “X3” may be used herein to denote the individual identity of the moiety at position “X” for G3 (i.e. to differentiate from the “X” position in G1 and G2).
In addition to the linker having a chain length of at least 3 atoms (e.g. 3 to 5 atoms) between G1 and G2, then preferably the linker has a chain length of at least 3 atoms between G1 and G3, such as 3 to 5 atoms between G1 and G3. More preferably, the linker has a chain length of at least 3 atoms between G1 and G3 and a chain length of at least 3 atoms between G2 and G3, such as 3 to 5 atoms between G1 and G3 and 3 to 5 atoms between G2 and G3. Even more preferably, the linker has a chain length of 3 atoms between each of G1 and G2, G1 and G3, and G2 and G3.
When the ligand has a structure represented by formula (Ib), then the metal complex has a structure that may be represented by formula (IIIb):
where M is the metal as defined above and n is 1, 2 or 3, preferably n is 2. Each of G1, G2 and G3 is coordinated to the metal.
When the ligand comprises only three groups for coordinating to the metal, namely G1, G2 and G3, then the ligand is typically a tridentate ligand or it may be a tetradentate ligand (e.g. the ligand is a tripodal ligand). The ligand may be a tetradentate ligand when the linker comprises a coordinating atom, such as when A in formula (Ic) below is selected from —O—, —S—, and —NE1-.
It is preferred that the ligand is at least a tridentate ligand. More preferably, it is preferred that the ligand comprises at least three groups for coordinating to the metal, which are G1, G2 and G3. It has been found that metal complexes having at least a tridentate ligand, particularly when the ligand has coordinating groups G1, G2 and G3, show better activity in promoting the growth of a photosynthetic organism than analogous metal complexes having a bidentate ligand with only two coordinating groups G1 and G2.
In general, the ligand may have a structure as represented by formula (Ic):
G1-(CR1R2)-A-(CR3R4)-G2 (Ic)
wherein:
A is selected from —O—, —S—, —(CE1H)— and —NE1-;
E1 is selected from —H, —(CR5R6)-G3, optionally substituted C1 to C6 alkyl, a water solubilising group and a fluorophore group;
each of R1, R2, R3, R4, R5 and R6 is independently selected from —H, optionally substituted C1 to C6 alkyl, a water solubilising group and a fluorophore group.
In formula (Ic) the linker is represented by the moiety —(CR1R2)-A-(CR3R4)—, which has a chain length of 3 atoms between G1 and G2. When A is either —(CE1H)— or —NE1- and E1 is —(CR5R6)-G3, then the linker has a chain length of 3 atoms between G1 and G2, a chain length of 3 atoms between G1 and G3 and a chain length of 3 atoms between G2 and G3.
When A is —O— or —S— or when A is either —(CE1H)— or —NE1- and E1 is —H (i.e. a hydrogen atom), then the ligand comprises only G1 and G2 as the groups for coordinating to the metal. The ligand is at least a bidentate ligand. The ligand may be a tridentate ligand. For example, the ligand may be a tridentate ligand if a lone pair from the —O—, —S— or —N— in the linker is able to coordinate with the metal. This will depend on the identity of the metal and the overall structure of the ligand.
When A is either —(CE1H)— or —NE1- and E1 is —(CR5R6)-G3, then the ligand comprises only G1, G2 and G3 as the groups for coordinating to the metal. The ligand is at least a tridentate ligand. The ligand may be a tetradentate ligand. For example, the ligand may be a tetradentate ligand if a lone pair from the —N— in the linker is able to coordinate with the metal.
When E1, R1, R2, R3, R4, R5 or R6 is optionally substituted C1 to C6 alkyl, then the C1 to C6 alkyl may optionally be substituted with a group selected from C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy, C3 to C8 carbocyclyloxy, a water solubilising group and a fluorophore group.
R1 and R3 is preferably each —H. More preferably, R1, R2, R3 and R4 is each —H. Even more preferably, R1, R2, R3, R4, R5 and R6 is each —H.
In general, it is preferred that A is —NE1-. The ligand may then be represented by formula (Id) or formula (Ie):
In formula (Ic) or (Ie), R5 is preferably —H. Thus, when the ligand has a structure represented by formula (Ic) or (Ie), then preferably R1, R3 and R5 is each —H.
When the ligand has a structure represented by formula (Ic) or (Ie), then preferably R5 and R6 is each —H. More preferably, R1, R2, R3, R4, R5 and R6 is each —H.
In general, the ligand preferably has a structure represented by formula (Ie).
The ligand comprises at least two groups for coordinating to the metal, which are represented by G1 and G2. The ligand may comprise only two groups for coordinating to the metal (e.g. G1 and G2).
As a general feature of the ligand (i.e. see formulae (Ia), (Ib), (Ic), (Id), (Ie), (IIIa) or (IIIb) above), each of G1 and G2 independently comprises a heterocyclic group as represented by formula (IIa):
wherein ring1 is directly bonded to the linker, and X is a heteroatom selected from nitrogen, sulfur and oxygen. The wavy line attached to ring1 denotes the point of attachment of G1 or G2 to the linker. Ring1 is not directly bonded to the linker at X. The heteroatom (represented by X) has a lone pair of electrons for coordinating to the metal.
G1 and G2 may be the same or different. For each of G1 and G2, it is preferred that ring1 has 5 ring atoms.
G1 and G2 may each independently be optionally substituted by one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy, C3 to C8 carbocyclyloxy, a water solubilising group and a fluorophore group.
In alpha-carbonic anhydrase, the metal ion is coordinated to the nitrogen atoms of 3 separate imidazolyl groups, each of which is from a histidine amino acid. In beta-carbonic anhydrase, the metal ion is coordinated to one nitrogen atom from the imidazolyl group of histidine and two sulfur atoms, each of which is from a cysteine amino acid.
In principle, G1 and G2 may each independently comprise a heterocyclic group having two or more fused rings, which includes ring1 and ring2, as represented in formula (IIb) (see below). Each heterocyclic group may comprise at least three fused rings, such as where ring1 is fused to ring2 (as shown in formula (IIb)), and where ring2 is fused to a ring3 (not shown in formula (IIb)). Ring3 is preferably not fused to ring1.
Generally, it is preferred that G1 and G2 each independently comprise a heterocyclic group having only two fused rings (i.e. ring1 and ring2 as shown in formula (IIb)).
It is preferred that each of G1 and G2 independently comprises a heterocyclic group having fused bicyclic rings as represented by formula (IIb):
wherein ring1 is directly bonded to the linker, and X is a heteroatom selected from nitrogen, sulfur and oxygen. More preferably, both G1 and G2 independently comprise a heterocyclic group having only two fused bicyclic rings as represented by formula (IIb) above.
The fused bicyclic ring system provides steric bulk around the active site (i.e. the metal or metal ion) of the metal complex. The rings influence the shape and size of the active site within the metal complex.
For each of G1 and G2, ring1 and/or ring2 may be optionally substituted. It is preferred that ring2 is optionally substituted. Ring1 may be unsubstituted.
Each of G1 and G2 is typically an optionally substituted heterocyclic group having 9 or 10 ring atoms.
Typically, ring2 has 6 ring atoms. When the heterocyclic group has 9 or 10 ring atoms, then ring1 has 5 or 6 atoms (e.g. ring1 and ring2 share 2 ring atoms). It is preferred that ring2 is aromatic.
G1 and G2 may each independently be an optionally substituted heterocyclic group as represented by formula (IIc):
wherein Y is selected from —CH2—, —NH—, —S— and —O—; Q is selected from —CH2—, —CH—, —NH—, —N—, —S— and —O—; and at least one of Y and Q is a heteroatom (e.g. Y is not —CH2— when Q is —CH2— or —CH—). When Q is —CH— or —N—, then there is a double bond at the position represented by the dashed line (e.g. see formula (IIc1) below). When Q is —CH2—, —NH—, —S— or —O—, then there is a single bond at the position represented by the dashed line (e.g. see formula (IIc2) below).
The wavy line in formulae (IIc), (IIc1) and (IIc2) attached to ring1 denotes the point of attachment of G1 or G2 to the linker in formulae (Ia), (Ib), (Ic), (Id), (Ie), (IIIa) or (IIIb) above. The labels “ring1” and “ring2” in formula (IIc) above are included for illustrative purposes. With reference to “Y”, the terms “Y1” and “Y2” may be used herein to denote the individual identity of the moiety at position “Y” for G1 and G2 respectively. Similarly, with reference to “Q”, the terms “Q1” and “Q2” may be used herein to denote the individual identity of the moiety at position “Q” for G1 and G2 respectively.
It is preferred that Y is selected from —NH— and —S—; and Q is selected from —NH, —N—, and —S—, particularly —N— and —S—.
Each of G1 and G2 may be independently selected from a heterocyclic group shown in Table 1, which is optionally substituted, such as described above.
G1 may be an optionally substituted heterocyclic group, wherein the heterocyclic group is:
It is preferred that G1 is an optionally substituted heterocyclic group, wherein the heterocyclic group is selected from benzofuranyl, benzothiophenyl, indolyl, benzoxazolyl, benzothiazolyl and benzimidazolyl, such as 2-benzofuranyl, 2-benzothiophenyl, 2-indolyl, 2-benzoxazolyl, 2-benzothiazolyl or 2-benzimidazolyl. More preferably, the heterocyclic group is selected from benzoxazolyl, benzothiazolyl and benzimidazolyl, particularly 2-benzoxazolyl, 2-benzothiazolyl or 2-benzimidazolyl. Even more preferably, the heterocyclic group is 2-benzothiazolyl or 2-benzimidazolyl. The heterocyclic group may be 2-benzothiazolyl. The heterocyclic group may be 2-benzimidazolyl.
Typically, G2 is an optionally substituted heterocyclic group, wherein the heterocyclic group is:
It is preferred that G2 is an optionally substituted heterocyclic group, wherein the heterocyclic group is selected from benzofuranyl, benzothiophenyl, indolyl, benzoxazolyl, benzothiazolyl and benzimidazolyl, such as 2-benzofuranyl, 2-benzothiophenyl, 2-indolyl, 2-benzoxazolyl, 2-benzothiazolyl or 2-benzimidazolyl. More preferably, the heterocyclic group is selected from benzoxazolyl, benzothiazolyl and benzimidazolyl, particularly 2-benzoxazolyl, 2-benzothiazolyl or 2-benzimidazolyl. Even more preferably, the heterocyclic group is 2-benzothiazolyl or 2-benzimidazolyl. The heterocyclic group may be 2-benzothiazolyl. The heterocyclic group may be 2-benzimidazolyl.
More preferably, G1 and G2 is each independently an optionally substituted heterocyclic group as represented by formula (IId):
wherein Y is selected from —CH2—, —NH—, —S— and —O—. The wavy line attached to ring1 denotes the point of attachment of G1 or G2 to the linker in formulae (Ia), (Ib), (Ic), (Id), (Ie), (IIIa) or (IIIb) above. The labels “ring1” and “ring2” are included for illustrative purposes. With reference to “Y”, the terms “Y1” and “Y2” may be used herein to denote the individual identity of the moiety at position “Y” for G1 and G2 respectively.
Each heterocyclic group (for G1 or G2) may be unsubstituted or substituted by one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy, C3 to C8 carbocyclyloxy, a water solubilising group and a fluorophore group. For the avoidance of doubt, the optional substituent may be attached to the heterocyclic group at the Y position.
The ligand may preferably have a structure represented by formula (If):
wherein:
Y1 is selected from —CH2—, —NH—, —S— and —O—;
Y2 is selected from —CH2—, —NH—, —S— and —O—;
E1 is selected from —H, —(CR5R6)-G3, optionally substituted C1 to C6 alkyl, a water solubilising group and a fluorophore group, such as described above; and each of R1, R2, R3, R4, R5 and R6 is as defined above.
It is preferred that Y1 is selected from —NH— and —S—. More preferably, Y1 is —S—.
Y2 is preferably selected from —NH— and —S—. More preferably, Y2 is —S—.
In one embodiment, E1 is —H; Y1 is —S— and Y2 is —S—. In another embodiment, E1 is —H; Y1 is —NH— and Y2 is —NH—.
In general, the ligand may comprise three groups for coordinating to the metal, namely G1, G2 and G3. The ligand preferably comprises only three groups for coordinating to the metal (e.g. G1, G2 and G3).
As a general feature of the ligand (i.e. see formulae (Ia), (Ib), (Ic), (Id), (Ie), (If), (IIIa) or (IIIb) above), G3 comprises a heterocyclic group as represented by formula (IIa):
wherein ring1 is directly bonded to the linker, and X is a heteroatom selected from nitrogen, sulfur and oxygen. The wavy line attached to ring1 denotes the point of attachment of G3 to the linker. Ring1 is not directly bonded to the linker at X. The heteroatom (represented by X) has a lone pair of electrons for coordinating to the metal.
G1 and G3 may be the same or different. G1 and G2 may be the same or different.
For G3, it is preferred that ring1 has 5 ring atoms.
G3 may be optionally substituted by one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy, C3 to C8 carbocyclyloxy, a water solubilising group and a fluorophore group.
In principle, G3 may comprise a heterocyclic group having two or more fused rings, which includes ring1 and ring2, as represented in formula (IIb) (see below). The heterocyclic group may comprise at least three fused rings, such as where ring1 is fused to ring2 (as shown in formula (IIb)), and where ring2 is fused to a ring3 (not shown in formula (IIb)). Ring3 is preferably not fused to ring1.
Generally, it is preferred that G3 comprises a heterocyclic group having only two fused rings (i.e. ring1 and ring2 as shown in formula (IIb)).
It is preferred that G3 comprises a heterocyclic group having fused bicyclic rings as represented by formula (IIb):
wherein ring1 is directly bonded to the linker, and X is a heteroatom selected from nitrogen, sulfur and oxygen. More preferably, G3 comprises a heterocyclic group having only two fused bicyclic rings as represented by formula (IIb) above.
For G3, ring1 and/or ring2 may be optionally substituted. It is preferred that ring2 is optionally substituted. Ring1 may be unsubstituted.
G3 is typically an optionally substituted heterocyclic group having 9 or 10 ring atoms.
Typically, ring2 has 6 ring atoms. When the heterocyclic group has 9 or 10 ring atoms, then ring1 has 5 or 6 atoms (e.g. ring1 and ring2 share 2 ring atoms). It is preferred that ring2 is aromatic.
G3 may be an optionally substituted heterocyclic group as represented by formula (IIc):
wherein Y3 is selected from —CH2—, —NH—, —S— and —O—; Q3 is selected from —CH2—, —CH—, —NH—, —N—, —S— and —O—; and at least one of Y3 and Q3 is a heteroatom (e.g. Y3 is not —CH2—when Q3 is —CH2— or —CH—). When Q3 is —CH— or —N—, then there is a double bond at the position represented by the dashed line. When Q3 is —CH2—, —NH—, —S— or —O—, then there is a single bond at the position represented by the dashed line.
The wavy line in formula (IIc) attached to ring1 denotes the point of attachment of G3 to the linker in formulae (Ia), (Ib), (Ic), (Id), (Ie), (IIIa) or (IIIb) above.
It is preferred that Y3 is selected from —NH— and —S—; and Q3 is selected from —NH, —N—, and —S—, particularly —N—, and —S—.
G3 may be selected from a heterocyclic group shown in Table 1, which is optionally substituted, such as described above.
Typically, G3 is an optionally substituted heterocyclic group, wherein the heterocyclic group is selected from:
It is preferred that G3 is an optionally substituted heterocyclic group, wherein the heterocyclic group is selected from benzofuranyl, benzothiophenyl, indolyl, benzoxazolyl, benzothiazolyl and benzimidazolyl, such as 2-benzofuranyl, 2-benzothiophenyl, 2-indolyl, 2-benzoxazolyl, 2-benzothiazolyl or 2-benzimidazolyl. More preferably, the heterocyclic group is selected from benzoxazolyl, benzothiazolyl and benzimidazolyl, particularly 2-benzoxazolyl, 2-benzothiazolyl or 2-benzimidazolyl. Even more preferably, the heterocyclic group is 2-benzothiazolyl or 2-benzimidazolyl. The heterocyclic group may be 2-benzothiazolyl. The heterocyclic group may be 2-benzimidazolyl.
More preferably, G3 is an optionally substituted heterocyclic group as represented by formula (IId):
wherein Y is selected from —CH2—, —NH—, —S— and —O—. The wavy line denotes the point of attachment of G3 to the linker in formulae (Ia), (Ib), (Ic), (Id), (Ie), (If), (IIIa) or (IIIb) above. With reference to “Y”, the term “Y3” may be used herein to denote the individual identity of the moiety at position “Y” for G3 (i.e. to differentiate from the “Y” position in G1 and G2).
The heterocyclic group for G3 may be unsubstituted or substituted by one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy, C3 to C8 carbocyclyloxy, a water solubilising group and a fluorophore group. For the avoidance of doubt, the optional substituent may be attached to the heterocyclic group at the Y position.
The ligand may preferably have a structure represented by formula (If2):
wherein:
Y1 is selected from —CH2—, —NH—, —S— and —O—;
It is preferred that Y1 is selected from —NH— and —S—.
Y2 is preferably selected from —NH— and —S—.
Y3 is preferably selected from —NH— and —S—.
In one embodiment, Y1 is —S—; Y2 is —NH— and Y3 is —NH— or —S—, preferably Y3 is —S—. In another embodiment, all of Y1, Y2 and Y3 are —S— or —NH—, preferably —S—.
The metal complex may be:
It is preferable, particularly for the second to fourth aspects of the invention, that the metal complex is not:
It may be preferable, particularly in the second, third or fourth aspects of the invention, that the metal complex is not a zinc complex of tris(2-benzimidazolylmethyl)amine.
It is preferable, particularly for the fifth aspect of the invention, that the ligand is not:
Some of the ligands, such as nitrilotris(2-benzimidazolylmethyl-6-sulfonic acid, contain several acid groups. The reference to a conjugate base refers to the mono-salt (e.g. mono-sulfonate or mono-carboxylate salt), the di-salt or the tri-salt of the acid. Some of the ligands, such as triethyl 2,2′,2″-(2,2′,2″-nitrilotris(methylene)tris(1H-benzimidazole-2,1-diyl))triethanoate [“(BimC1E)3”], contain several ester groups. The reference to a carboxylic acid thereof refers to the mono-, di- or tri-carboxylic acid of the ligand (e.g. after hydrolysis of one or more of the ester groups).
In general, the heterocyclic group of each of G1, G2 and G3 may be optionally substituted with one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, fluoro-(C1 to C6 alkyl), cyano, nitro, C6 to C10 aryl, C3 to C8 carbocyclyl, C1 to C6 alkoxy, C6 to C10 aryloxy, C3 to C8 carbocyclyloxy, a water solubilising group and a fluorophore group. It is preferred that each of G1, G2 and G3 is optionally substituted with one or more substituents selected from C1 to C6 alkyl, C2 to C6 alkenyl, C2 to C6 alkynyl, halo, C1 to C6 alkoxy, C6 to C10 aryloxy, a water solubilising group and a fluorophore group.
When the heterocyclic group of each of G1, G2 and G3 is optionally substituted with a fluorophore group, then it is preferred that the fluorophore group is a coumarin derivative.
When the heterocyclic group of each of G1, G2 and G3 is optionally substituted with a water solubilising group, then it is preferred that the water solubilising group is a carboxylic acid group (—COOH) or a conjugate base, an ester, an anhydride or an amide thereof; or a sulfonic acid group (—SO3H) or a conjugate base, a sulfonic ester, a sulfonic anhydride or a sulfonamide thereof. More preferably, the water solubilising group is a carboxylic acid group (—COOH), a sulfonic acid group (—SO3H) or a conjugate base thereof.
The metal complex may be a zwitterion or may further comprise a counterion. The counterion is either an anion or a cation. The presence of an anion or a cation in the metal complex will depend on the overall charge of the species comprising the metal.
The counterion is preferably a monovalent counterion (i.e. the counterion has a charge of +1 or −1).
It is generally preferred that the counterion is a non-coordinating counterion. Such counterions are well-known in the art.
For example, when the metal complex comprises a counter anion, then the anion may be selected from perchlorate (ClO4
When the metal complex comprises a counter cation, then the cation may be selected from an alkali metal cation (e.g. Li+, Na+, K+), an alkaline earth metal cation (e.g. Ca2+, Mg2+) and an ammonium cation (NH4+).
The counter cation or counter anion may be an agriculturally acceptable salt. The agriculturally acceptable salt may provide the desired solubility, bioefficacy, toxicity and environmental safety characteristics for the intended use.
The metal complex may comprise a second ligand. The second ligand may be a coordinating solvent, such as water.
The invention also provides, in a third aspect, a method of preparing a metal complex. The method comprises mixing in solution (a) a salt of a metal selected from the group consisting of zinc (Zn), cobalt (Co), copper (Cu), nickel (Ni) and iron (Fe) with (b) the ligand as described above.
The salt of the metal may be a perchlorate (ClO4
Additionally, or alternatively, the salt of the metal may be an acetate salt of the metal, a halide salt of the metal, or a nitrate salt of the metal.
The solution of the salt of the metal and the ligand may be prepared by either (a) adding the salt of the metal to a solution of the ligand, (b) adding the ligand to a solution of the salt of the metal or (c) simultaneously adding the salt of the metal and the ligand to a solvent.
The solution of the salt of the metal and the ligand may be refluxed.
The metal complex may be purified using conventional techniques.
In a fourth aspect, the invention provides a formulation. The formulation comprises a metal complex or a precursor thereof in accordance with the invention. As mentioned above, the precursor comprises the ligand for preparing the metal complex optionally in combination with a metal salt for preparing the metal complex.
The formulation may further comprise a biological agent and/or an agrochemical. The biological agent includes, for example, bacteria, fungi, nematodes or viruses. The biological agent is typically beneficial in promoting growth.
The agrochemical may, for example, include a fertiliser, a plant activator, a pesticide, a fungicide, a herbicide, an insecticide or a nematicide.
The formulation may be an aqueous solution comprising the metal complex or a precursor thereof.
The invention will now be illustrated by the following non-limiting examples.
1H (400 MHz), 13C, COSY and HMQC/HSQC NMR spectra were acquired on a Bruker AMX-400 spectrometer at room temperature. Coupling constants are quoted in Hz and the multiplicities are quoted as follows: s=singlet, d=doublet, t=triplet, q=quartet, m=multiplet and b=broad.
Electrospray Time-of-Flight mass spectra were recorded using a Waters LCT Premier.
Thin-layer chromatography was performed using pre-coated aluminium-backed alumina plates (Aluminium oxide 60, F254, neutral) and visualisation achieved under a UV lamp. Column chromatography was achieved using type I neutral alumina.
Elemental analysis was carried out by the Elemental Analysis Service at London Metropolitan University.
All reagents were bought from Sigma Aldrich, Fisher Scientific, VWR or Fluorochem and were used “stock” without further purification. Deuterated NMR solvents were bought from Goss scientific.
The ligands were synthesised using a modified version of the conditions detailed by V. O. Rodionov et.al. (J. Am. Chem. Soc., 129 (42), (2007), 12696-704).
o-Phenylenediamine (4.22 g, 39 mmols), nitrilotriacetic acid (2.48 g, 13 mmols) and ethylene glycol (30 ml) were all added to an appropriate round bottom flask, which was then heated to 200° C. under stirring, at which point the brown solution became purple. The reaction was left overnight under reflux using a waterless condenser. The flask was removed from the heat and left to cool to room temperature. Once cooled, the contents were transferred to a beaker and ice water was added, forming a precipitate. The mixture was stirred for 5 minutes at room temperature, after which it was filtered in vacuo to give a pink solid. The precipitate was left to dry overnight. The crude product was recrystallized from ethanol and left to dry in air, affording a pure peach solid. Yield 93%. δH/ppm (400 MHz, DMSO) 12.45 (s, 3H), 7.57 (m, 6H), 7.17 (m, 6H), 4.15 (s, 6H); m/z (ES-ToF); 408.19 ([M+H]+).
2-Aminothiophenol (4.88 g, 39 mmols), nitrilotriacetic acid (2.48 g, 13 mmols) and ethylene glycol (30 ml) were all added to an appropriate round bottom flask, which was then heated to 200° C. under stirring, at which point the yellow solution became amber. The reaction was left overnight under reflux using a waterless condenser. The flask was removed from the heat and left to cool to room temperature. Once cooled, the contents were transferred to a beaker and ice water was added, forming a precipitate. The mixture was stirred for 5 minutes at room temperature, after which it was filtered in vacuo to give a yellow solid. The precipitate was left to dry overnight. The crude product was recrystallized from ethanol and left to dry in air, affording a pure yellow solid. Yield 44%. δH/ppm (400 MHz, DMSO) 8.16-8.12 (m, 3H), 7.98-7.94 (m, 3H), 7.50-7.43 (m, 6H), 4.40 (s, 6H); m/z (ES-ToF); 459.08 ([M+H]+).
o-Phenylenediamine (4.55 g, 42.1 mmols), nitrilodiacetic acid (2.80 g, 20.9 mmols) and ethylene glycol (45 ml) were all added to an appropriate round bottom flask, which was then heated to 200° C. under stirring, at which point the brown solution became purple. The reaction was left overnight under reflux using a waterless condenser. The flask was removed from the heat and left to cool to room temperature. Once cooled, the contents were transferred to a beaker and ice water was added, forming a precipitate. The mixture was stirred for 5 minutes at room temperature, after which it was filtered in vacuo to give a pink solid. The precipitate was left to dry overnight. The crude product was recrystallized from ethanol/water and left to dry in air, affording a pure light brown solid. Yield 66%. δH/ppm (400 MHz, DMSO) 12.27 (s, 2H), 7.54-7.50 (m, 4H), 7.16-7.07 (m, 4H), 3.98 (s, 4H); m/z (ES-ToF); 278.14 ([M+H]+).
2-Aminothiophenol (4.25 g, 42.1 mmols), nitrilodiacetic acid (2.80 g, 20.9 mmols) and ethylene glycol (45 ml) were all added to an appropriate round bottom flask, which was then heated to 200° C. under stirring, at which point the yellow solution became amber. The reaction was left overnight under reflux using a waterless condenser. The flask was removed from the heat and left to cool to room temperature. Once cooled, the contents were transferred to a beaker and an ethanol: ice water mixture was added, forming a precipitate. The mixture was stirred for 5 minutes at room temperature, after which it was filtered in vacuo to give a yellow solid. The precipitate was left to dry overnight. The crude product was recrystallized from ethanol and left to dry in air, affording a pure yellow solid. Yield 40%. δH/ppm (400 MHz, DMSO) 8.09 (dd, J=1.8 and 7.2 Hz, 2H), 7.92 (dd, J=1.8 and 7.2 Hz, 2H), 7.53-7.37 (m, 4H), 4.28 (s, 4H); m/z (ES-ToF); 312.06 ([M+H]+).
H(BimH)2 (0.963 g, 2.5 mmols) and 2-benzothiazolecarboxaldehyde (0.429 g, 2.63 mmols) were dissolved in 50 ml dry THF forming a clear brown solution. Glacial acetic acid (0.6 g, 10 mmols) was added and the solution was stirred for one hour. Sodium triacetoxyborohydride (1.06 g, 5 mmols) was added and the solution was left stirring under nitrogen at room temperature. After 48 hours, the clear brown solution became an opaque light brown solution. The reaction mixture was transferred to a separating funnel containing 50 ml water and 50 ml DCM. The aqueous layer was extracted twice more with 50 ml DCM and the combined organic fractions were extracted once with 50 ml water. The solvent was rotary evaporated and the crude product was purified by column chromatography (1% MeOH in DCM) on an alumina column producing a yellow/orange solid. Yield 56%. δH/ppm (400 MHz, DMSO) 12.45 (s, 2H), 8.06 (dd, J=1.2 and 7.8 Hz, 1H), 7.94 (dd, J=1.2 and 7.8 Hz, 1H), 7.60-7.40 (m, 6H), 7.19-7.15 (m, 4H), 4.39 (s, 2H), 4.22 (s, 4H); m/z (ES-ToF); 425.16 ([M+H]+).
H(Bth)2 (0.625 g, 2 mmols) and 2-benzimidazolecarboxaldehyde (0.438 g, 3 mmols) were dissolved in 50 ml dry THF under sonication forming an opaque cream solution. Glacial acetic acid (0.6 g, 10 mmols) was added and the solution was stirred for one hour. Sodium triacetoxyborohydride (1.06 g, 5 mmols) was added and the solution was left stirring under nitrogen at room temperature. After 48 hours, a further 10 mmol glacial acetic acid was added. After five days, an additional 10 mmol glacial acetic acid and 5 mmol sodium triacetoxyborohydride were added. After one week, the opaque cream solution had become a clear light brown solution. Proton NMR showed complete consumption of starting aldehyde. The reaction mixture was transferred to a separating funnel containing 50 ml water and 50 ml DCM. The aqueous layer was extracted twice more with 50 ml DCM and the combined organic fractions were extracted once with 50 ml water. The solvent was rotary evaporated and the crude product was purified by column chromatography (1% MeOH in DCM) on an alumina column producing a yellow/orange solid. Yield 68%. δH/ppm (400 MHz, DMSO) 12.34 (s, 1H), 8.12 (dd, J=1.0 and 6.6 Hz, 2H), 7.95 (dd, J=1.0 and 6.6 Hz, 2H), 7.54-7.42 (m, 6H), 7.20-7.15 (m, 2H), 4.49 (s, 4H), 4.21 (s, 2H); m/z (ES-ToF); 442.12 ([M+H]+).
Each of the ligands described above was used to prepare a zinc complex using the general method below. The abbreviated notation given above is used to identify each ligand (e.g. Zn3N is a zinc complex of the “3N ligand”, which is (BimH)3).
Zinc perchlorate hexahydrate (0.37 g, 1 mmol), the ligand (1 mmol) and ethanol (10 ml) were added to an appropriate round bottom flask, which was then heated to 80° C. under stirring. The reaction was left under reflux for 1 hour, after which a colour change usually occurs. The flask was removed from the heat and left to cool to room temperature. Once cooled, the contents were transferred to a beaker and ice water added. The mixture was left to stand for several minutes, after which a precipitate formed. The precipitate was filtered in vacuo to give the solid. The precipitate was left to dry overnight. No purification of the crude product was required. The characterisation data for each of the zinc complexes that were prepared is as follows.
Yield 56%; δH/ppm (400 MHz, Acetone) 12.60 (b, s, 3H), 8.11 (s, 3H), 7.71 (s, 3H), 7.44 (s, 6H), 4.98 (s, 6H); m/z (ES-ToF); 516.11 ([M+HCO2]+); Anal. Calcd. For [(0H2)Zn((BimH)3)](ClO4)2: C, 41.79; H, 3.36; N, 14.21. Found: C, 41.85; H, 3.35; N, 13.88.
Yield 69%; δH/ppm (400 MHz, Acetone) 8.63 (d, 3JH-H=8.4 Hz, 3H), 8.17 (d, 3JH-H=8.3 Hz, 3H), 7.72 (t, 3JH-H=8.5, 7.4 Hz, 3H), 7.59 (t, 3JH-H=8.3, 7.4, 3H), 5.40 (s, 6H); m/z (ES-ToF); 556.97 ([M+HCO2]+); Anal. Calcd. For [(0H2)Zn((Bth)3)](ClO4)2: C, 38.91; H, 2.72; N, 7.56. Found: C, 38.78; H, 2.60; N, 7.14.
Yield 35%; δH/ppm (400 MHz, Acetone) 12.49 (s, 2H), 8.03 (dt, 3JH-H=7.8, 3.2 Hz, 2H), 7.72 (dt, 3JH-H=7.7, 3.5 Hz, 2H), 7.48-7.37 (m, 4H), 4.93 (s, 4H); m/z (ES-ToF); 386.06 ([M+HCO2]+); Anal. Calcd. For [(0H2)Zn(H(BimH)2)](ClO4)2: C, 34.34; H, 3.06; N, 12.51. Found: C, 34.73; H, 3.20; N, 12.72.
Yield 50%; δH/ppm (400 MHz, Acetone) 8.19 (d, 3JH-H=8.1 Hz, 2H), 8.01 (d, 3JH-H=8.1 Hz, 2H), 7.69-7.58 (m, 4H), 5.08 (s, 4H); m/z (ES-ToF); 409.08 ([M+CH3OH+H]+); Anal. Calcd. For [(0H2)Zn(H(Bth)2)](ClO4)2: C, 32.37; H, 2.55; N, 7.08. Found: C, 32.23; H, 2.33; N, 7.37.
Yield 60%; δH/ppm (400 MHz, DMSO) 13.41 (s, 2H), 8.37 (s, 1H), 8.16 (d, 3JH-H=8.0 Hz 1H), 7.95 (s, 2H) 7.77-7.46 (m, 4H), 7.34 (m, 4H), 4.76 (s, 2H), 4.72 (s, 4H); m/z (ES-ToF); 533.07 ([M+HCO2]+); Anal. Calcd. For [(0H2)Zn((BimH)2(Bth))](ClO4)2: C, 40.78; H, 3.14; N, 11.89. Found: C, 40.72; H, 3.18; N, 11.90.
Yield 61%; δH/ppm (400 MHz, DMSO) 12.48 (s, 1H), 8.14 (dt, 3JH-H=8.0, 0.9 Hz, 2H), 8.01 (s, 1H), 7.68 (s, 1H) 7.53 (t, 3JH-H=7.6 Hz, 3H), 7.45 (td, 3JH-H=7.6, 1.2 Hz, 2H), 7.21 (dd, 3JH-H=6.2, 2.9 Hz), 4.56 (s, 4H), 4.29 (s, 2H); m/z (ES-ToF); 550.04 ([M+HCO2]+); Anal. Calcd. For [(0H2)Zn((BimH)(Bth)2)](ClO4)2: C, 38.86; H, 2.84; N, 9.85. Found: C, 38.69; H, 2.95; N, 9.56.
Kinetic measurement of CO2 hydration and HCO3
CO2 hydration:
HCO3
The hydration and dehydration rate measurements were undertaken by detecting the associated pH change through the use of an appropriate colorimetric pH indicator via stopped-flow equipment (Applied Photophysics SX-20 Stopped-flow Spectrometer) as described by B. H. Gibbons et al. (J. Biol. Chem., 238(10), (1963), 3502-3507). The pH time-dependence of CO2 hydration or HCO3
Following the procedure reported by K. Nakata et al. (J. Inorg. Biochem., 89, (2002), 255-266), a 0.1 M buffer solution containing 10×10−5M indicator, 0.2 M NaClO4 and varying concentrations of the zinc complex in DMSO 1:9 H2O were loaded into one syringe and a CO2 or HCO3
Upon mixing of the two syringes, the change in absorbance over time was measured at 25° C. For each buffer solution employed over the tested pH range, the buffer factor (change in absorbance vs concentration of HCl/NaOH) and linearity of CO2 and HCO3
Based upon the linearity of the response between CO2 or HCO3
Briefly, Vhyd/dehyd=−Q(A0−Ae)[d(In(A−Ae))/dt]t→0, where Q=buffer factor. The function [d(In(A−Ae))/dt]t→0 was taken from fitting the first linear portion of the time-dependent absorbance data with a single exponential decay function. kobs was calculated as the slope of the linear fit between mimic concentration and Vhyd/dehyd/[S]. kcat (catalytic rate constant) was calculated as the pH independent catalyst rate constant as per K. Nakata et al. (J. Inorg. Biochem., 89, (2002), 255-266) and L. Koziol et al. (Inorg. Chem., 51(12), (2012) 6803-12) for the hydration reaction (kcat=kobs×(([H+]/Ka)+1)), and Y.-J. Sun et al. (Inorg. Chem. Commun., 7(2), (2004), 165-168) for the dehydration reaction (kcat=(kobs×([H+]+Ka))/[H+]). Each run of 3 repeats was undertaken 3 times and the average taken, to give N=9. The results are shown in Tables 3 and 4 below.
From the results in Tables 3 and 4 above, it can be seen that the Zn1N2S complex shows the best specificity toward dehydration. At high concentrations (see Table 4), the dehydration reaction is faster in most cases than the hydration reaction. It is believed that such a result has never previously been observed.
Rubisco was purified using hydrophobic interaction chromatography as per the method of K. O'Donnelly et al. (Plant methods, 10, (2014), 17). For all assays, the rate was determined using a non-radioactive microplate-based assay, which determines the product 3-phosphoglycerate (3-PGA) through the oxidation of NADH by optical density measurements at 340 nm at 25° C., adapted from R. Sulpice et al. (Plant Cell Environ., 30(9), (2007), 1163-75) and K. O'Donnelly et al. (Plant methods, 10, (2014), 17). A Thermo Scientific Varioskan Flash Multimode microplate reader was used to monitor the oxidation of NADH for 15 minutes every 100 ms.
The enzymological properties of Rubisco were typically measured as follows: 10 μL Rubisco and 10 μL of initial buffer were incubated for 15 mins, after which 10 μL of ribulose 1,5-biphosphate (RuBP) was added [Final concentrations for Rubisco assay in 30 μL total volume were 0, 10, 20, 40, 80, 150, 300 and 500 μM RuBP, 0.02 mg/mL Rubisco, 100 mM tricine (pH 8.0/NaOH), 20 mM MgCl2, 2 mM EDTA and 10 mM NaHCO3]. After 60 seconds, 10 μL of absolute ethanol was added to stop the reaction. After 5 mins, 20 μL of the reaction mixture was transferred to a 384-well plate, and 20 μL of determination buffer was added [final concentrations in 40 μL were 1.88 units/mL PGK, 3 units/mL GAPDH, 2.5 units/mL G3PDH-TPI, 50 units/mL G3POX, 700 units/mL catalase, 3 mM ATP, 11 mM NADH, 1 mM MgCl2, 60 mM tricine (pH 8.0, NaOH)]. The activity was calculated as μmol·min−l·mg−1 using a calibration curve with 3PGA.
10 μL 3PGA and 10 μL of initial buffer were incubated for 15 mins in a 384-well plate, after which 10 μL of RuBP was added to start the reaction [Final amounts for 3PGA calibration curve in 30 μL total volume were 500 μM RuBP, 0, 0.005, 0.01, 0.025, 0.05, 0.1, 0.3, 0.6, 0.8 nmol 3PGA, 100 mM tricine (pH 8.0/NaOH), 20 mM MgCl2, 2 mM EDTA and 10 mM NaHCO3]. After 60 seconds, 10 μL of absolute ethanol was added to stop the reaction. After 5 mins 20 μL of the reaction mixture was transferred to a 384 well plate, and 20 μL of determination buffer was added [final concentrations in 40 μL were 1.88 units/mL PGK, 3 units/mL GAPDH, 2.5 units/mL G3PDH-TPI, 50 units/mL G3POX, 700 units/mL catalase, 3 mM ATP, 1 mM NADH, 11 mM MgCl2, 60 mM tricine (pH 8.0, NaOH)]. The rates of reaction were calculated as the maximum decrease of absorbance over time (OD·min−1).
10 μL of Rubisco and 10 μL of pH 8 initial buffer containing varying concentrations of zinc complex were incubated in a 96 well plate for 15 mins. After shaking, 10 μL of RuBP was added to start the reaction [final concentrations of 30 μL mixture contained 0.3 nmol 3PGA, 0-50 μM zinc mimic, 100 mM tricine (pH 8.0), 20 mM MgCl2 and 2 mM EDTA. NaHCO3, and RuBP concentration varied depending on the experiment]. The final pH, after the addition of NaHCO3, and before the addition of Rubisco, was measured as pH 8.0.
After 60 seconds 10 μL of absolute ethanol was added to stop the reaction. 20 μL of the assay mixture was added to a 384 well plate (after 5 mins of incubation with ethanol), and 20 μL of determination buffer was added to start the reaction [final concentrations of enzymes and substrates from Part 2 of reaction in 40 μL were: 1.88 units/mL phosphoglycerate kinase (PGK), 3 units/mL glyceraldehyde-3-phosphate dehydrogenase (GAPDH), 2.5 units/mL α-glycerol-3-phosphate dehydrogenase/triose-P isomerase (G3PDH-TPI), 50 units/mL glycerol-3-phosphate oxidase (G3POX), 700 units/mL catalase, 3 mM ATP, 1 mM NADH, 11 mM MgCl2, 60 mM tricine (pH 8.0, NaOH)]. The activity was calculated as μmol·min−1·mg−1 using a calibration curve with 3PGA.
Commercial cultivar spinach seeds (Spinacia oleracea L.) were planted in soil mixture of “John Innes Inc. seed sowing compost No2”: Vermiculite (4:1) in small pots. Spinach seeds were germinated in a Sanyo MLR-352 growth chamber under day (photosynthetically active photon flux density (PPFD) at 110-130 μmol·m-2s-1) and night conditions, changing every 12 hours. Air temperature was maintained at 20° C. and 15° C. during day and night conditions, respectively, with a constant relative humidity at 65%. Spinach plants were irrigated three times a week. At the second true leaf stage (approximately 3 weeks from seed germination), the seeds were transferred into larger singular pots in “John Innes No2—Potting on compost” soil. No extra fertilizer was added.
At the fourth true leaf stage (roughly 4-6 weeks after germination), the treatment (1.5 mM in DMSO or H2O) was applied directly to each leaf of the plant in 5 μl droplets using a Brand Handystep S. The treatments were applied three times a week (directly after irrigation) for two weeks. The leaf stage and the state of the leaves were observed throughout the treatment period.
The results are shown in
For the avoidance of doubt, the entire content of any and all documents cited herein is incorporated by reference into this document.
| Number | Date | Country | Kind |
|---|---|---|---|
| 1817792.3 | Oct 2018 | GB | national |
| Filing Document | Filing Date | Country | Kind |
|---|---|---|---|
| PCT/GB2019/053083 | 10/31/2019 | WO | 00 |
