The present invention pertains generally to biosensors for detection of analytes of interest, such as biomolecules, cells, and viruses.
Detection of biological analytes is useful in various applications in biotechnology and personalized medicine. The analytes of interest may range from macromolecules, such as proteins and nucleic acids, to viruses and whole cells. One class of biosensors, electrical biosensors, show promise for point-of-care and other applications, but have had problems with stability and reliability, particularly biosensors relying on the detection of labeled molecules.
Thus, there remains a need for improved biosensors that can lower the cost of diagnostics in clinical settings and for use in research and drug discovery.
The invention relates to a novel biosensor, the metal-insulator transition (MIT) point biosensor, a non-expensive miniaturized device, having a small footprint and high sensitivity, which can measure molecular interactions or the presence of small amounts of molecules without the need for the molecules to be labeled. The sensor comprises a vanadium dioxide (VO2) layer located between two metal measuring pads. The introduction of molecules of interest to the sensor surface results in changes in the oxide interface charge density that can be detected by a shift in the metal oxide transition point and differences in the amount of current passing through the oxide. The MIT biosensor is useful for the detection of charged molecules, including macromolecules, such as proteins or nucleic acids as well as other types of particles, such as cells, bacteria, or viruses.
In one aspect, a sensor is disclosed for detection of an analyte. The sensor includes two metal measuring pads, a vanadium dioxide (VO2) layer in which the VO2 layer is located between the two metal measuring pads, and a resistive heating mechanism electrically connected to the two metal measuring pads. The resistive heating element is configured to determine a change in the metal-insulator transition (MIT) point of the VO2 layer therebetween in response to a binding of the analyte of interest to the sensor.
In some forms, the metal measuring pads may be gold, titanium, or platinum, for example.
In some forms, the sensor may further include a ligand immobilized on the surface of the VO2 layer. This ligand may be for example, but not limited to, an antigen, an antibody, a hormone, a neurotransmitter, a receptor, an agonist, an antagonist, a substrate, an allosteric effector, an enzyme, a carbohydrate, a lectin, a drug, an inorganic molecule, or an organic molecule.
According to another aspect, a method is disclosed of using the sensor of the type described herein to detect the analyte of interest. The method includes the steps of contacting the VO2 layer with a sample comprising the analyte of interest and measuring the metal-insulator transition (MIT) point of the VO2 using the resistive heating mechanism. A detected change in the MIT point compared to a reference MIT point is used to indicate that the analyte of interest is bound to the sensor.
In some forms of the method, the method may further include the step of binding a ligand to the surface of the VO2 layer. It is contemplated that the analyte of interest may bind to this ligand and that this analyte might be, for example, but not limited to, a molecule (including charged molecules or polar molecules; macromolecules such as proteins, nucleic acids, lipids, or carbohydrates), a cell (including eukaryotic or prokaryotic cells or cells from bacteria, protists, fungi, plants, or animals), a virus, or a particle. Further, the analyte may be unlabeled. It is contemplated that the ligand may be for example, but not limited to, an antigen, an antibody, a hormone, a neurotransmitter, a receptor, an agonist, an antagonist, a substrate, an allosteric effector, an enzyme, a carbohydrate, a lectin, a drug, an inorganic molecule, or an organic molecule.
In some forms, the molecular interactions may be detected between members of a binding pair.
According to yet another aspect, a microfluidic device is disclosed comprising one or more sensors of the type described herein.
In some forms, it is contemplated that the microfluidic device may include a plurality of the sensors and that these sensors may be organized in a parallel array.
If there are multiple sensors, then in another aspect, a method is disclosed for using the microfluidic device for multiplexed detection of analytes. This method includes the steps of binding a ligand to the surface of the VO2 layer of each sensor in which a different ligand is bound to each sensor in the parallel array, contacting the VO2 layer with a sample comprising one or more analytes of interest, and measuring the metal-insulator transition (MIT) point of the VO2 for each sensor in the parallel array, wherein a change in the MIT compared to a reference MIT for a sensor indicates that an analyte of interest is bound to the sensor.
In some forms of this method, the ligand(s) may be, for example, but not limited to, an antigen, an antibody, a hormone, a neurotransmitter, a receptor, an agonist, an antagonist, a substrate, an allosteric effector, an enzyme, a carbohydrate, a lectin, a drug, an inorganic molecule, and/or an organic molecule. Further, the analytes of interest may be a molecule, a cell, a virus, and a particle (such as those described more explicitly above, for example). In some forms of the method, a different antibody is bound to each sensor in the parallel array.
Now, some other non-limiting advantages of MIT sensors are now presented for consideration. Again, these advantages are by way of example only and not all sensors or methods related thereto may realize these advantages.
A first advantage may be label-free detection. Label-free biosensors attempt to overcome the stability and reliability problems of biosensors relying on the detection of labeled molecules. Since it is a direct detection, only one antibody may be employed. Thus, the distortion of results due to cross-reactivity should be minimal relative to other sandwich immune based strategies for protein detection where two high quality antibodies for each target protein are needed. This technology is expected to outperform antibody-based array methods in terms of accuracy.
A second advantage may be high sensitivity. This biosensor can respond to not only surface charge accumulation, but also to polar molecules including possible antibody and antigen. As a result, the binding of just a few molecules to the sensor surface can cause a big change in the measured signal.
A third advantage may be that this technology offers the possibility for multiplexed biomarker detection. Multiplexing is a valuable feature to enable high throughput proteomics and genomics in large scale, and fabrication of an array of parallel MIT sensors in each microfluidic channel is another feature that improves the detection limit as the minimum concentration of target bio-molecule.
A fourth advantage may be that the sensors are relatively easy to fabricate and are inexpensive. Because one of the strengths of this technology is the low fabrication cost facilitating scalability, this technology can be easily multiplexed to detect different target proteins. MIT sensors may be fabricated in a parallel array, and different antibodies may be patterned on each sensor's surface.
A fifth advantage may be that the device may be miniaturized with a small footprint. In order to maintain the portability and low cost of this technology, the footprint of the readout instrumentation can be miniaturized. A low-noise CMOS (complementary metal oxide semiconductor) with a lock-in amplifier combined with the sensors can be custom designed.
A sixth advantage may be that this MIT sensor has no oxidation problems like other Si-based biosensors. Since vanadium dioxide is being used as the sensor surface, there is no risk of oxidation or the measured signal drift due to the chemical reactions like some of the silicon-based sensors.
These and still other advantages of the invention will be apparent from the detailed description and drawings. What follows is merely a description of some preferred embodiments of the present invention. To assess the full scope of the invention, the claims should be looked to as these preferred embodiments are not intended to be the only embodiments within the scope of the claims.
The practice of the present invention will employ, unless otherwise indicated, conventional methods of chemistry, biochemistry, cell biology, molecular biology and recombinant DNA techniques, within the skill of the art. Such techniques are explained fully in the literature. See, for example, A. L. Lehninger, Biochemistry (Worth Publishers, Inc., current addition); Sambrook et al., Molecular Cloning: A Laboratory Manual (3rd Edition, 2001); Methods In Enzymology (S. Colowick and N. Kaplan eds., Academic Press, Inc.).
All publications, patents, and patent applications cited herein, whether supra or infra, are hereby incorporated by reference in their entireties for all purposes.
In describing the present invention, the following terms will be employed, and are intended to be defined as indicated below.
It must be noted that, as used in this specification and the appended claims, the singular forms “a”, “an”, and “the” include plural referents unless the content clearly dictates otherwise. Thus, for example, reference to “a ligand” includes a single ligand, a mixture of two or more ligands, and the like.
The term “about”, particularly in reference to a given quantity, is meant to encompass deviations of plus or minus five percent.
As used herein, the term “ligand” refers to a molecule that binds to another molecule, for example, an antigen binding to an antibody, a hormone or neurotransmitter binding to a receptor, a substrate or allosteric effector binding to an enzyme, or a carbohydrate binding to a lectin, and includes natural and synthetic biomolecules, such as proteins, polypeptides, peptides, nucleic acid molecules, carbohydrates, sugars, lipids, lipoproteins, small molecules, natural and synthetic organic and inorganic materials, synthetic polymers, and the like.
As used herein, the term “binding pair” refers to first and second molecules that specifically bind to each other. “Specific binding” of the first member of the binding pair to the second member of the binding pair in a sample is evidenced by the binding of the first member to the second member, or vice versa, with greater affinity and specificity than to other components in the sample. The binding between the members of the binding pair is typically noncovalent. Unless the context clearly indicates otherwise, the terms “ligand” and “target analyte” are used herein to refer to first and second members of a binding pair, respectively.
Before describing the present invention in detail, it is to be understood that this invention is not limited to particular formulations or process parameters as such may, of course, vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments of the invention only, and is not intended to be limiting.
Although a number of methods and materials similar or equivalent to those described herein can be used in the practice of the present invention, some preferred materials and methods are described herein.
The invention relates to a novel biosensor, the metal-insulator transition (MIT) point biosensor, a non-expensive miniaturized device, having a small footprint and high sensitivity, which can measure molecular interactions or the presence of small amounts of molecules without the need for the molecules to be labeled. The sensor comprises a vanadium dioxide (VO2) layer located between two metal measuring pads. The introduction of molecules of interest to the sensor surface results in changes in the oxide interface charge density that can be detected by a shift in the metal oxide transition point and differences in the amount of current passing through the oxide. The MIT biosensor is useful for the detection of charged molecules, including macromolecules, such as proteins or nucleic acids as well as other types of particles, such as cells, bacteria, or viruses. The MIT biosensor also has the capability of processing a parallel array of sensors in microfluidic channels for multiplex detection of biomolecules on a single chip. Use of inexpensive materials and minimized fabrication steps lowers the cost of the MIT sensor dramatically. In addition, MIT biosensors do not have the oxidation or corrosion problems of most electrical biosensors. The MIT biosensor array has the potential to significantly lower the cost of diagnostics in clinical settings and may have substantial use in drug discovery.
It will be appreciated that VO2 is a Mott insulator that undergoes an insulator-metal transition at roughly 340 K. During this phase transition, it undergoes a significant drop in resistivity and which is believed to be also closely accompanied by a structural phase transition from monoclinic to rutile crystal structure. This transition can be induced by different driving forces, including temperature, electric field, light, strain, doping, substrate, and so forth. Due to changes in resistance, crystal structure, and optical properties, this material has found various applications in different areas like neuromorphic computing, optics, non-volatile memory, micromechanics, and so forth. The driving mechanism behind the metal-insulator transition (MIT) in two terminal devices of VO2 was under debate until recently, with competing claims supporting joule-heating and electric field as the driving mechanism. It was recently shown that the conductance switching caused by MIT is driven purely by joule heating, where the material undergoes a sufficient increase in temperature to induce a thermally driven transition.
This sensor works based on the change of metal-insulator transition (MIT) behavior by changing the oxide interfaces charge density. The metal-insulator transitions observed in correlated-electron materials provide an intriguing possibility. Some transition-metal oxides exhibit both metallic and insulating states, at a fixed carrier density, and can be switched between them by varying temperature, strain, and external electrical boundary conditions.
Some of the oxides such as vanadium dioxide (VO2) have this property. A striking feature of these compounds arise from their first-order metal-insulator transition (MIT), in some conditions the system behaves as a half-filled metal state for VO2, and some others the system adopts the insulating ground state, at which the resistance changes abruptly by several orders of magnitude. Others have used an electric-double-layer transistor (EDLT) technique involving an organic ionic liquid, which enables them to tune the surface charge density, on a VO2 oxide layer as a bulk. M. Nakano et al, Collective bulk carrier delocalization driven by electrostatic surface charge accumulation, Nature 487, 459 (July 2012). In their study they showed that surface charge accumulation is accompanied by a collective lattice deformation along the c-axis direction, and resultant delocalization of previously localized electrons in the bulk VO2 film, leading to a three-dimensional metallic ground state with high carrier density (‘proliferatively’ generated) throughout the film.
In this disclosure, attachment of biomolecules such as proteins or DNAs, or viruses, bacteria or any other particles with charge to the surface of the oxide are comtemplated such that the oxide serves as a sensor. The principle of operation is that, by changing the oxide interface charge density and its electrical boundary condition through reception of analytes (and/or receptors), a detectable change in metal-insulator transition (MIT) behavior of the oxide can result. The detection of attachment can be performed by looking at the change of switching voltage, which is due to the presence or interaction of biomolecules (or more, generally, receptors and analytes).
In order to further an understanding of the invention, a more detailed discussion is provided below regarding the MIT biosensor.
Below are examples of specific embodiments for carrying out the present invention. The examples are offered for illustrative purposes only, and are not intended to limit the scope of the present invention in any way.
Efforts have been made to ensure accuracy with respect to numbers used (e.g., amounts, temperatures, etc.), but some experimental error and deviation should, of course, be allowed for.
An MIT sensor structure is shown in
With additional reference being made to the schematic of
The mechanism that results in this observable change is bulk delocalization by surface charge accumulation. By introducing charge to the oxide surface [either directly as in
Experiments were run using these MIT sensors to establish that a biosensor can be made with VO2 that responds to not only surface charge accumulation, but that also responds to polar molecules such as an antibody and antigen as are illustrated in
Now with additional reference to
When biomolecules with charges are attached to the oxide surface, this metal-oxide transition point (i.e., the sudden discontinuity in electrical behavior) will be shifted as well as the passing current through the oxide. Since the transition point and the passing current both are different due to the attachment of biomolecules, as a result the calculated electronic resistance (and power) at the metal-oxide transition point is different. In fact, it dropped at about 70° C. when it was heated and came back to its initial value at about 60° C. when it was cooled, giving rise to the shown current-voltage curve in
In order to show the proof of concept for protein detection with MIT devices, the ability of the sensors to detect binding of biotin and streptavidin was tested in separate trials depicted in
The procedure for the first trial, depicted stepwise in
As illustrated in
As inducing surface charges was believed to affect the transition point, these tests with polar molecules like BSA and streptavidin serves as proof of concept that surface changes can alter bulk properties and measured electrical behavior of the VO2. Again,
Then, in the control experiment depicted in
Thus, this example presents the fabrication and testing of metal-insulator transition (MIT) point biosensors for protein detection. The results of this example demonstrate the feasibility of using metal-insulator transition (MIT) point biosensors for detection of biomolecular interactions or any particle with charges. As already mentioned, electronic sensing using metal-insulator transition (MIT) point biosensor devices offers several advantages. These sensors are label free, small, fast, and low cost. The metal-insulator transition (MIT) point sensors can potentially be used for large-scale multiplexed cancer biomarker discovery. See, for example, the MIT sensor structure illustrated in
In this example, a reduction is observed in the power required to switch the resistance state of the material upon treatment of the surface of lateral VO2 devices with polar molecules. Using blackbody-emission temperature measurement, it is shown that this reduction in power is accompanied by a reduction in the switching temperature. BBSA-Streptavidin binding was again chosen to demonstrate the effect. As noted in Example I, this binding has been extensively studied and is a well-understood process, and therefore can serve to model and characterize a system for protein and receptor-target interactions. When the polar molecules bind to the surface and then to one another, it is believed that there is a net transfer of charge to the surface of VO2 and hence a change in the transition temperature and the joule heating-driven switching current is observed. In addition, it is shown that when the species of molecules used in the experiment are not expected to bind to one another, there is much less, or negligible, net transfer of charge to the surface of VO2, hence little or no change in the transition temperature.
Although there is no comprehensive understanding of the role of BSA, biotin and streptavidin in inducing surface charges, there are several studies that have established some aspects of the microphysics of their behavior. Biotin-streptavidin interaction is one of the most widely used in bioconjugation chemistry, owing to the strong affinity and high specificity of the interaction. The presence of four binding sites on each streptavidin molecule makes it possible to link together biotin-tagged molecules or biotin-tagged molecules to a biotin functionalized surface. The functional groups of biotin that binds to streptavidin are oriented away from the BSA molecules. And streptavidin molecules also have specific functional groups that bind with biotin. Thus, the utility of BSA was in helping orient the functional groups of biotin that attaches with those in streptavidin and in helping the other species bind to the surface of VO2, thereby yielding an array of polar molecules with a finite net directional orientation. Since biotin is a polar molecule, it was believed that the biotin bound to BSA would induce a net surface charge and hence a Debye layer on the surface of VO2. This belief is also supported by the experiment described by
It is noted that there are variations in the electrical characteristics seen in
Electrical characterization of the effect was observed experimentally.
Now with further reference to
The inset in
Then, an identical experiment was performed using BSA instead of biotinylated BSA, as is illustrated in
If the deposited molecules could be removed, then the effect of such an operation on the behavior of the film could be examined. Removing the polar molecules from the VO2 surface is possible through several chemical processes by changing the environmental pH, however such techniques caused damage to the VO2 film including peel-off, evidencing that the binding is very strong. In case this was possible, it would not be expected to see a change in the films behavior (in specific, the film reverting to the virgin state) immediately upon removal of the deposited molecules, as against the film's behavior in the presence of these molecules. This follows from the electro-chemical characterization performed by others using ionic liquid gating. Interestingly, to be able to retrieve the virgin state, the film must acquire a Debye layer with inverted charge layers relative to that which caused the change in resistance to begin with. This is far easier to explore with a controllable ionic gating (as has been done elsewhere), while the aim here was to explore the sensing ability of the material.
A change in power at the switching current is believed to be an indication of a change in the transition temperature, since the switching is driven by joule-heating. But this reduction in power could also be caused by other factors, for instance, inhomogeneity in the film, possibly caused by addition of multiple surface layers, as in this experiment.
To determine if the temperature of transition really changed, in-situ blackbody emission measurements were used to directly measure local temperature during switching. The “bare sensor” curve in
The local temperature was then measured with the same technique on a device with identical geometry, and electrical behavior, which was treated with biotinylated BSA and streptavidin in
Since this is a surface sensitive technique and temperature measured on a bare surface is being compared to that on a treated surface, a temperature gradient across the layer of deposited/treated molecules could result in measurement of a slightly lower temperature than that at the surface of VO2. While possible artifacts like this are acknowledged, the significant change in measured transition temperature is believed to be supported by other evidence (for example, in
While others have allegedly observed a structural phase transition throughout the thin-film upon MIT due to surface charge accumulation; here, it is shown that structural composition averaged over the thickness of the film is unaffected with lowering in the transition temperature. It is acknowledged the surface charges, in this case, by themselves did not induce an MIT and we needed additional energy from joule-heating to induce MIT (
A physical understanding of the altering of phase transition temperature in VO2 due to surface charges was the hypothesis of surface charge accumulation causing a bulk carrier delocalization and effectively getting the material out of its Mott insulator state once the surface charges exceed a threshold concentration. But this theory was brought under question by the evidence that the oxidation state of vanadium and the oxygen content in VO2 change when accumulation of surface charges caused a significant reduction in the transition temperature to induce the MIT.
But in this Example, it can be seen that there is reduction in the transition temperature (although the charges are not sufficient to cause a metal-insulator transition by themselves) with no change in the oxidation state of the material. Hence, this Example shows that a chemical change by itself is not responsible for the mere lowering of the transition temperature, although such a chemical change might be the cause of or accompanies the charge-induced metal-insulator transition as others have discussed.
In conclusion, it has been shown that deposition of specific polar species on surface of a Mott insulator like VO2 alters the transition temperature sufficient enough to enable the detection of the polar species. It has been observed that the switching current of the devices reduces upon treatment with polar molecules and is further observed that it is accompanied by a reduction in the switching temperature. It has been shown that the sensor can detect charged species with specificity. It is also shown that vanadium's oxidation state or the material's structure is not altered during charge sensing. This result shows promise for this effect as a sensing mechanism, especially for biological and physical applications, while this result also adds to the interesting puzzles and possible solutions surrounding phase transitions in VO2.
It should be appreciated that various other modifications and variations to the preferred embodiments can be made within the spirit and scope of the invention. Therefore, the invention should not be limited to the described embodiments. To ascertain the full scope of the invention, the following claims should be referenced.
This application claims the benefit of the filing date of U.S. Provisional Patent Application No. 61/943,015 filed Feb. 21, 2014, which is hereby incorporated by reference for all purposes as if set forth in its entirety herein.
This invention was made with Government support under contract HG000205 awarded by the National Institutes of Health (NIH). The Government has certain rights in this invention.
Filing Document | Filing Date | Country | Kind |
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PCT/US15/16762 | 2/20/2015 | WO | 00 |
Number | Date | Country | |
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61943015 | Feb 2014 | US |