The invention relates to a method for measuring the concentration of at least one ligand contained in a sample that is to be tested, in which at least one receptor that is suitable, when it contacts the ligand, for binding specifically to said ligand is immobilized in each case at at least two test sites that are located on the surface of at least one substrate. The invention also relates to an apparatus for measuring the concentration of at least one ligand contained in a sample to be tested having at least one inlet opening for the measurement chamber containing the sample, which has an interior cavity having defining walls, and on at least one defining wall there are located at least two test sites at which in each case at least one receptor that is suitable when contacting the ligand to bind specifically to said ligand is immobilized, and having at least one sensor to acquire measured signals for the number or density of the binding events at the individual test sites. The invention further relates to an apparatus for measuring the concentration of at least one ligand contained in a sample to be tested having at least one inlet opening for the measurement chamber containing the sample, which has an interior cavity having defining walls, and on at least one defining wall there is located at least one test site at which in each case at least one receptor that is suitable when contacting the ligand to bind specifically to said ligand is immobilized, and having at least one sensor to acquire a measured signal for the number or density of the binding events at the individual test site.
A method of this type and an apparatus of this type are disclosed in DE 102 45 435 B4. The apparatus has a measurement chamber that is embodied as a flow cell and that has an interior cavity having an inlet opening and an outlet opening for the sample that is to be tested. The interior cavity is surrounded by defining walls, namely a flat bottom section, a flat top section parallel thereto at a distance from the bottom section, and side defining walls, on which the inlet and outlet openings are provided. On its surface that borders the interior cavity, the bottom section has an optical waveguide layer on which a plurality of test sites that are laterally separated from each other are located and on which receptors are immobilized in the evanescence field of the waveguide. In order to induce the emission of luminescence radiation as a function of the binding of the ligand contained in the sample to the receptors, optical radiation that is generated with the aid of a radiation source is directed into the waveguides. A radiation receiver that is sensitive to the luminescence radiation is provided under the receptors at each test site. Even though this apparatus has proven itself due to its simple and cost-effective design, it has certain disadvantages. For example, the measurement of the concentration of the ligand is limited to a predetermined measurement range, in particular if the concentration is to be measured simultaneously for a number of different ligands at the individual test sites. If the concentration of at least one ligand lies outside the measurement range, the measured values can be restricted for the respective test site.
Therefore, the object is to provide a method and an apparatus of the aforesaid type that permits the concentration of the ligand to the measured with high precision across a wide range of concentrations.
This object is accomplished with respect to the method of the aforesaid type such that the sample is brought into contact with the test sites for a predetermined length of time, the receptors that are immobilized in the sample at the test sites border on variously sized diffusion volumes, from which the ligand, of which at least one must be present, can diffuse to the respective receptor during a predetermined length of time if the ligand is contained in the diffusion volume, and after the predetermined length of time has passed, for each test site a measured signal for the number or the density of the binding events is acquired at the respective test site.
As a consequence of the variously sized and in some cases different dimensions that the diffusion chambers have, different calibration curves or characteristic curves (measured signal as a function of the exposure time for a given ligand concentration) advantageously result when the measurements are performed for the individual test sites. If at the beginning of a test the ligand concentration at each of the individual test sites is the same, in other words if the ligand is homogeneously distributed in the sample, the measured signal from the test site that borders on a large diffusion volume will reach its limit faster than the measured signal from a test site that borders on a small diffusion volume, because more ligands can diffuse per time unit to the receptors at the respective test site from the larger test volume than can diffuse from the small diffusion volume. This ensures at least one measured signal will always be in a favorable output range across a broad range of concentrations. The receptors, of which at least one must be present, may comprise a nucleic acid or a derivative thereof (DNA, RNA, PNA, LNA, oligonucleotides, plasmids, chromosomes), a peptide, a protein (enzyme, protein, oligopeptides, cellular receptor protein and the complexes thereof, peptide hormone, antibody, and the fragments thereof), a carbohydrate and its derivatives, in particular a glycosylated protein and a glycoside, a fat, a fatty acid, and/or a lipid.
In a preferred embodiment of the invention the measured values are each compared with a predetermined reference value or reference range, and the concentration of the ligand in the sample is determined with the aid of the measured signal that has the least deviation from the reference value or the reference value range or that coincides with the reference value range. By comparing the individual measurement results with the reference value or reference range, a measured signal that is located in a favorable output range, and therefore allows the ligand concentration to be determined precisely after the measurement or exposure time has passed, can be selected. Here, it is even possible to determine the concentration with the aid of a plurality of measured signals that lie within the reference range when the measurement time or exposure time has passed, for example by generating a mean value.
It is advantageous for the reference value to lie between 25% and 75%, more preferably between 40% and 60% of the measured signal that is measured at one test site if essentially all of the receptors of the test site are bound to one ligand, and if the reference value preferably corresponds to the inflection point of a sigmoidal calibration curve that assigns each of the various values for the ligand concentration to respective measured values for the test site. The method then permits an even more precise measurement of concentration, in particular if during the measurement measured values for a correspondingly large number of tests sites are measured with different diffusion chambers.
In a preferred embodiment of the method, the variously sized diffusion volumes are formed by at least one defining wall that borders on the sample at a distance from the test site. The diffusion volume is then defined by the geometry of the measurement chamber and is therefore easy to reproduce.
In a preferred embodiment of the invention, the variously sized diffusion volumes are formed by locating the sample at the individual test sites with different fill levels. This may be accomplished, for example, by providing the test sites at the bottom of a trough or a measurement chamber and disposing the bottom at an incline relative to a horizontal plane or in the shape of steps so that, beginning at one side of the bottom, the sample fill height increases or decreases relative to the diametrically opposite other side of the bottom, for example in the shape of a wedge or in the shape of steps.
With regard to the apparatus of the aforesaid type, the aforesaid object of the invention is accomplished by having the distance between the test site and the wall area of the measurement chamber that is opposite said test site in the direction of a line running normal to the plane of extension of the test site be different at the individual test sites.
When the measurement chamber is filled with the sample, variously sized diffusion volumes result in the sample at the individual test sites, from which, during a predetermined measurement time, ligands can defuse to the receptors located at the test site in order to specifically bind to said receptors. In this way, the measured signals have variously controlled outputs at the individual test sites after the measurement time has passed. This permits at least one measured signal to be located in a favorable output range, in which the concentration of the ligand can be determined with high precision, across a wide range of concentrations.
It is advantageous if the sensor, of which at least one must be present, communicates with an evaluation device, if the evaluation device has a reference value generator for providing at least one reference value or reference range for the measured signals from the test sites, if the evaluation device has at least one comparison device for comparing the measured signals from the individual test sites with a reference value or a reference value range, and if the comparison device is connected to a switching device such that the measured signal that has the smallest deviation from the reference value or from the reference value range, or that coincides with said range, can be applied to a measured signal output of the switching device. With the aid of the evaluation device, a favorably output measured signal for measuring the respective ligand concentration can be selected by means of a comparison with the reference value or the reference value range, and it can be applied to the measured signal output. With the aid of this measured value and the characteristic values assigned to the corresponding test site, for example with the aid of a calibration curve, the concentration of the ligand in the sample can then be determined with a high degree of precision. The evaluation device preferably has a microcomputer. The measured signal output can be located in the microcomputer, in particular in the form of an output for a serial or parallel digital signal.
In a preferred embodiment of the invention, in the case with least two test sites, the distance between the respective test site and the opposing wall area in the direction of the line running normal to the plane of extension of the test site is moveable. By moving the wall areas correspondingly, a liquid that is located in the measurement chamber can be moved and, in particular, transported in a given direction.
With regard to the apparatus of the aforesaid type, the above object is accomplished by having at least one defining wall be moveable relative to at least one additional defining wall in such a way that the diffusion volume from which at least one ligand can diffuse to the receptor during a predetermined measurement time when the interior cavity is filled with sample changes, means to acquire measured signals with different diffusion volumes are provided, the evaluation device has a reference value generator for providing at least one reference value or reference value range for the measured signals from the test site of which at least one must be present, the evaluation device has at least one comparison device for comparing the measured signals acquired with the individual diffusion volumes with the reference value or reference range, and the comparison device is connected to a switching device in such a way that the measured signal that has the smallest deviation from the reference value or reference value range or that coincides with said reference value range, can be applied to a measured signal output of the switching device.
The individual measured signals may also be measured after one another in time, whereby with the individual measurements the defining walls are positioned at various distances relative to reach other in order to form variously large diffusion volumes at the test site. The resulting measured signals may then be temporarily stored in order, with the aid of the evaluation device, to select a measured signal whose output is favorably controlled. The concentration of the ligand in the sample can then be determined with this measured signal and at least one characteristic value for the diffusion volume at which the measured signal was acquired.
A particularly precise measurement of the concentration of the ligand is thereby possible when the reference value corresponds to the inflection point of a sigmoidal calibration curve and the various values for the ligand concentration are each assigned to a measured value for the test site.
It is advantageous if at least one test site at a first chamber wall and the wall area that is opposite this test site be assigned to a second chamber wall, and if said chamber walls are sloped at an angle relative to each other. In this case it is even possible for the chamber walls to be sloped relative to each other in orientations that are perpendicular to reach other. In this way the apparatus can be manufactured in a cost-effective manner with a multitude of different diffusion volumes.
The slope angle can be at least 2.5°, in particular at least 5°, and preferably at least 10°. In this case a slope angle is understood to mean the angle at which the main planes of extension of the opposing chamber walls, which preferably are flat, are sloped relative to reach other. The tests sites preferably are disposed at at least one of the two chamber walls that are sloped relative to reach other.
In another preferred embodiment of the invention, a step or shoulder is formed between at least two wall areas and at least one test site is assigned to each of these wall areas. A measurement chamber having such a stepped inner wall can be manufactured in standard production volumes with high precision using semiconductor technology manufacturing methods.
In some cases it may even be possible for the first chamber wall and/or the second chamber wall facing this first chamber wall to have a plurality of wall areas adjacent to each other and in orientations that are perpendicular to each another, between which steps or shoulders are formed. The apparatus then has compact dimensions and permits a multitude of test sites that border on differing diffusion volumes.
Compact dimensions of the measurement chamber are also made possible when the wall areas between which the steps or shoulders are formed are designed as polygons and preferably are arranged in a checkerboard or honeycomb fashion. The measurement chamber can then be manufactured in a cost-effective manner using standard semiconductor manufacturing processes.
It is advantageous if at least one first test site has a first distance to the opposite wall area in the direction of the line running normal to the plane defined by said test site and at least one second test site has a second distance to the opposite wall area in the direction of the line running normal to the plane defined by said second test site, and if the first distance is at least 1.5 times greater than, in particular at least two times greater than, and preferably at least four times greater than the second distance. These dimensions permit the apparatus to have high measurement dynamics.
It is advantageous if at least one sensor for detecting the ligand-receptor complexes is located in the wall of the measurement chamber on the individual test sites, and the receptor, of which at least one must be present, is immobilized on the sensor. The ligand-receptor complexes may then be detected directly at the given location and therefore have a correspondingly high detection sensitivity.
At least one sensor may be an ion-selective field-effect transistor. If this is the ease, the apparatus can be manufactured cost-effectively.
In a preferred embodiment of the invention, at least one sensor is an optical radiation sensor that is sensitive to the luminescence radiation that can be excited depending on the binding of the ligand to the receptor. The luminescence radiation may be excited by an excitation radiation that can be generated by means of a radiation source. The radiation source may be embodied as a semiconductor element integrated into the wall of the measurement chamber. However, the luminescence radiation may also be excited by chemical means. In this way it is possible to eliminate one radiation source.
Examples of embodiments of the invention are explained in greater detail below based on the drawing. The drawing shows:
An apparatus that is shown in complete form in
On a defining wall that forms the bottom of the measurement chamber 3 there are disposed a plurality of test sites 7 that are spaced apart from each other and that are arranged adjacent to each other in rows and columns in a matrix-like shape. A receptor 8 that is binding-specific for a ligand 2 of a particular ligand type is immobilized on each of the test sites 7 of the individual rows. The receptors of a first row of test sites differ from the receptors of a second row of test sites. Of course it is also possible for the receptors 8 of a plurality of rows having test sites 7, or all of the test sites 7, to belong to the same receptor type.
If receptors 8 for at least two receptor types are immobilized in the first measurement chamber 3, they do not necessarily have to be disposed in the same row of the test site matrix. Instead, receptors for various receptor types may be disposed in a first test site row, although only receptors of the same receptor type are immobilized at the same test site 7. Therefore, only ligands of a predetermined ligand type can bind to a particular test site 7.
At the individual test sites 7 the distance between the test site 7 and an opposing wall area of the measurement chamber in the direction of the line running normal to the plane of extension of the test site 7 varies. If the internal cavity 6 is filled with the sample, variously sized diffusion volumes, which are present in the sample and from which at least one ligand can diffuse during a predetermined exposure time to receptors 8 located at the respective test site 7, are adjacent to the test site.
A diffusion volume is understood to mean the partial volume of the interior cavity 6 of the measurement chamber 3 lying within a sphere whose center point is located at the test site and whose radius corresponds to the mean rate of diffusion of the ligand in the sample multiplied by the exposure time. The exposure time is understood to mean the time during which the sample is in contact with the test site 7 until the measurement is finished. In
In
However, it is also possible to mark the ligands 2 with the marker 9 before the sample is brought into contact with the test sites 7. In this case the sample containing the marked ligands 2 is first brought into contact with the test sites 7 for a predetermined exposure time, and then components of the sample that are not bound to a receptor 8 are removed from the measurement chamber 3.
After the ligands 2 are bound to the receptors 8 and marked, the test sites are irradiated by means of a radiation source 10 with an optical excitation radiation, which excites the markers 9 to emit luminescence radiation. The wavelength of the luminescence radiation differs from the wavelength of the excitation radiation.
The luminescence radiation is detected with the aid of optical sensors 11 that are integrated into the wall of the measurement chamber 3 at the individual test sites 7, in each case directly beneath the receptors 8. An optical blocking filter for the excitation radiation (not specifically shown in the drawing), which allows the luminescence radiation to pass, is provided between the receptors 8 and in the sensors 11. With the aid of the sensors 11, a measured signal, whose amplitude is dependent on the number of markers at the respective test site 7, is generated for each test site 7.
As can be seen in
The evaluation device 13 is only shown schematically in
In the example of the embodiment shown in
In the examples of embodiments shown in
In the example of the embodiment shown in
The sensors 11 for detecting the binding events are configured as ion-selective field-effect transistors that are integrated into the wall of the measurement chamber 3 directly beneath the receptors 8. The evaluation device 13 is also integrated into the wall of the measurement chamber 3.
In the example of the embodiment shown in
In order to measure the concentration of the ligand 2 a first test is performed in which the sample is transferred into the interior cavity 6 in such a way that the ligand 2, of which at least one must be present, that is marked with the marker 9 can bind at the receptor 8. Then components of the sample that are not bound to the receptor 8 are removed from the interior cavity 6, and a first measurement signal for the number of binding events at the test site 7 is acquired with the aid of the sensor 11. The measured signal is saved. Then any binding sites between a ligand and the receptor, of which at least one must be present, that may be present are broken, for example by applying heat, and the separated ligands are removed from the measurement chamber 3. In order to break the ligand-receptor bonds, the measurement chamber 3 may have a heater.
For a second test the distance between the defining walls is adjusted with the aid of an actuator 21 in order to change the diffusion volume. The second test is then performed in a corresponding manner. Then, if needed, at least one further test is performed, with the diffusion volume being changed in each test. The resulting measured values are compared with the reference value. With the aid of the measured signal that has the smallest deviation from the reference value, or that coincides with the reference values and with the aid of a calibration curve, the concentration of the ligand 2 in the sample is determined.
In
Number | Date | Country | Kind |
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07007510 | Apr 2007 | EP | regional |