The present application relates to a field of cancer treatment, and in particular, relates to a method for treating or alleviating gliomas in a subject and a pharmaceutical composition applicable for treating or alleviating gliomas in a subject.
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As the most common type of cancer in the central nervous system (CNS), high-grade gliomas (HGGs), particularly glioblastoma, are currently incurable, even with aggressive surgical resection and radiotherapies. The brain is composed of many types of cells that must be precisely orchestrated to maintain the integrity of a normal brain function. In parallel, glioma cells communicate with multiple normal cell types, such as astrocytes, endothelial cells, pericytes, immune cells, and neurons, to form unique microenvironments that are critical for the progression and invasion of tumor cells. Understanding the organization of the tumor microenvironment and its development are highly relevant to the prevention and treatment of HGGs.
The nervous system plays a key role in the pathogenesis of cancer. Initially reported in the peripheral nervous system (PNS), and later in the central nervous system (CNS), distinct types of neuronal cells influence the growth and metastasis of various cancers. In the CNS, glioma cells or brain metastatic cancer cells have been reported to intimately interact with neurons via synapse-like structures to promote the growth of glioma cells, either by paracrine factors such as neuroligin-3 (Nlgn3), or neurotransmitters. Although these studies revealed that neuronal activity plays a critical role in the progression of established tumor cells, it remains largely unclear whether neuronal activity affects the transformation of the cell-of-origin for HGG in their native microenvironments. Furthermore, it is largely unknown whether functional neuronal circuits in the brain under normal physiological conditions contribute to this process.
In brief, there is a need for a means which can be used for effectively treating or at least alleviating a gliomas in a subject in need thereof.
In view of this, the present application is aimed to provides a means which can be used for effectively treating or at least alleviating a gliomas in a subject in need thereof.
In a first aspect, a method for treating or alleviating gliomas in a subject is provided, including blocking neuron-derived IGF-1 from neurons in the subject, or a receptor thereof. In some embodiments, the neuron is one selected from a group consisting of interneuron and sensory neuron. In some embodiments, the sensory neuron is the olfactory neuron. In some embodiments, the blocking includes inhibiting olfactory signaling in the subject.
In some embodiments, in the method for treating or alleviating gliomas in a subject, inhibiting olfactory signaling in the subject includes one selected from a group consisting of depriving olfactory experience and administering to the subject in need thereof a therapeutically effective amount of an agent which inhibits activities of an olfactory neuronal circuit in a brain of the subject, inhibiting IGF-1 from M/T cells and Gad2 positive neurons, and inhibiting IGF-1 receptor signaling in pre-cancerous mutant oligodendrocyte precursor cells.
In some embodiments, depriving olfactory experience includes naris occlusion.
In some embodiments, the functional neuronal circuits include neuronal circuits responsible for sensory inputs of external environmental stimuli.
In some embodiments, the gliomas is a gliomas in neuronal circuits responsible for sensory inputs of external environmental stimuli.
In some embodiments, the subject is a mammal, for example, human.
In some embodiments, inhibiting activities of an olfactory neuronal circuit includes pharmaceutical and genetical inhibiting the activities of neurons in the olfactory neuronal circuits.
In some embodiments, inhibiting IGF-1 from M/T cells and Gad2 positive neurons includes pharmaceutically and genetically inhibiting the transcription, translation, transportation, modification and secretion of IGF-1 and the IGF-1 in the extracellular space.
In some embodiments, inhibiting IGF-1 receptor signaling in pre-cancerous mutant oligodendrocyte precursor cells includes pharmacologically and genetically inhibiting the IGF-1 receptor, PI3K/AKT/mTOR signaling and Ras/Raf/MEK/MAPK pathways.
In some embodiments, the genetical methods include knocking out genes by CRISPR/Cas9, inhibiting RNAs by shRNA, miRNA, siRNA and ASO and inhibiting proteins by neutralization antibody.
In a second aspect, a pharmaceutical composition applicable for treating or alleviating gliomas in a subject is provided, containing at least one inhibitor of an olfactory neuronal circuit in a brain of the subject.
In some embodiments, the inhibitor of exocytosis is one selected from a group consisting of Eeyarestatin I, Cotransins, CI-976, Dispergo, Apogossypol, FLI-06, AMF-26, Golgicide A, Exo2 and LG186, Exo1, AG1478, LM11, Secramine A, ZCL278, Pitstop-1 and pitstop-2, Dynasore, MiTMAB, 16D10, Compound A5, Vacuolin-1, Retro-1 and Retro-2, Compoun 75 and 134, and UYM201636.
In some embodiments, the inhibitor of IGF-1R signaling is one selected from a group consisting of Linsitinib (OSI-906), Ceritinib, Picropodophyllin, BMS-754807, GSK1838705A, BMS-536924, GSK1904529A, NVP-AEW541 (AEW541), AZD-3463, Ceritinib dihydrochloride (LDK378 dihydrochloride), NVP-TAE 226 (TAE226), AG1024 (Tyrphostin AG 1024), NVP-ADW742 (ADW742), XL228, AZ7550 Mesylate, Ginsenoside Rg5, PQ401, Indirubin Derivative E804, I-OMe-Tyrphostin AG 538 (I-OMe-AG 538), Chromeceptin, AZ7550 hydrochloride, AZ7550, AZ7550-d5, IGF-1R inhibitor-2, Picropodophyllotoxin-d6, AZ12253801, and PB-020.
In some embodiments, the pharmaceutical composition applicable for treating or alleviating gliomas in a subject further includes a pharmaceutically acceptable carrier.
In some embodiments, the neutralization antibody, such as Figitumumab (CP-751871), Ganitumab (AMG 479), Dalotuzumab (MK-0646), Teprotumumab, Robatumumab (Sch 717454) Xentuzumab, Lonigutamab (hz208F2-4) and Istiratumab (M-6495), neutralize IGF-1, IGF-1R or downstream proteins.
In summary, by using the method and pharmaceutical compositions provided by the present application, a gliomas can be effectively treated or at least alleviated.
The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.
The following description discloses the present application, so that those skilled in the art can realize the present application. The preferred embodiments described below are only examples. It is easy for those skilled in the art to make other obvious transformations. The basic principle of the present application defined in the following description can be applied to other implementation solutions, transformation solutions, improved solutions, equivalent solutions and other technical solutions without deviating from the spirit and scope of the present application.
In the description of the present application, the reference terms “an embodiment”, “some embodiments”, “example”, “specific example” or “some examples” mean that the specific feature, structure, material or characteristic illustrated in this embodiment or example is included in at least one embodiments or examples of the present application. In the specification of the present application, the exemplary expression of the above terms does not have to refer to the same embodiment or example. In addition, the specific features, structures, materials or characteristics can be combined in a suitable manner in any one or more embodiments or examples. Without contradiction, those skilled in the art can combine different embodiments or examples described in this specification with the features in different embodiments or examples.
Animals receive various sensory stimuli, such as odors, sounds, light, and touch, from the surrounding environment on a daily basis. These sensory inputs not only are essential to search for food and avoid predators but also affect their physiological status; and may cause diseases such as cancer. As the most lethal brain tumor, malignant gliomas are known to intimately communicate with neurons at the cellular level. However, it remains unclear whether external sensory stimuli can directly affect the development of malignant gliomas in normal living conditions.
By intensive studies, the present inventor found that, olfaction can directly regulate gliomagenesis. In an autochthonous mouse genetic model recapitulating OPC-originated adult gliomagenesis, gliomas preferentially emerge in the olfactory bulb (OB), the first relay of brain olfactory circuitry. Manipulating the activity of olfactory receptor neurons (ORNs) affects glioma development. Mechanistically, olfaction excites Mitral/Tufted (M/T) cells, which receive sensory information from ORNs and release insulin-like growth factor-1 (IGF-1) in an activity-dependent manner. Specific knockout of Igf1 in MIT cells suppresses gliomagenesis. In addition, blocking the influx of IGF-1 signaling by knocking out the IGF-1 receptor in pre-cancerous mutant OPCs fully diminishes ORN activity-dependent mitogenic effects. A unique link between the sensory experience and gliomagenesis through their corresponding sensory neuronal circuit is established. The present application is made based on the above findings.
A genetic mouse model to mimic spontaneous gliomagenesis in adults with OPCs as the cell-of-origin was established. In this model (termed CKO hereafter), tumor suppressor genes Trp53 and NF1 were conditionally knocked out in adult OPCs using the tamoxifen-inducible NG2-CreERT transgene. Tumor-lineage cells were visualized by Cre recombinase-dependent lineage-tracing reporter Rosa26LSLtdTomato (
To localize the brain structure(s) where tumors initially developed, a cohort of CKO mice was dissected at defined time points as shown in
The sub-structures in the OB was well characterized in mice, as illustrated in
To investigate the causal relationship between olfactory experience and glioma formation, the chemogenetic technology designer receptors exclusively activated by designer drugs (DREADD)20 was leveraged to specifically and neuronal excitability of ORNs was remotely manipulated. Two bacterial artificial chromosome (BAC) transgenic mouse lines (
Next, the Omp-hM4Di transgene was bred into the CKO model (
Similar to Omp-hM4Di, the Omp-hM3Dq transgene was bred into the CKO model (
As a result, it was validated that clozapine itself did not affect the proliferation of tumor cells either in vitro or in vivo or their invasion in vivo (
It was further noted that the mTq2 reporter did not express homogenously in all glomeruli within the same OB of the CKO_Omp-hM4Di model (
To directly manipulate the function of the olfactory circuit in a more physiologically relevant context, normal olfactory experience was deprived from the CKO model. Olfactory inputs through naris occlusion was suppressed by using small plugs, which was originally developed to study the plasticity of olfactory circuits19 (
Next, whether olfaction deprivation suppressed gliomagenesis was determined. Quantitative analyses confirmed no difference in the incidence or the average size of tumors between the left and right OBs in control mice, indicating that under normal living conditions, gliomas developed in both bulbs in an unbiased fashion (
To identify the candidate mitogen involved in olfaction-related gliomagenesis, bulk RNA sequencing was performed on the OBs from naris-occlusion models and found that 17 genes were consistently downregulated (
To identify the cellular sources of IGF-1 in the brain, an Igf1-EGFP BAC transgene (
Brain structures with prominent EGFP expression in the reporter line highly overlapped with tumor hot spots (
By using multiple cellular markers, it was confirmed that EGFP expression prominently overlapped with the Mitral/Tufted (M/T) cell marker TBR2, but not with those for glial cells, immune cells or other neurons (
Previous studies have reported that microglia can function as a cellular source of IGF-1 under multiple normal or pathological conditions, including brain tumors. However, in the present application, by using the IGF-1 reporter lines suggest that microglia contribute trivial IGF-1 either in the normal mouse forebrain throughout development (
To unambiguously determine whether M/T cells play critical roles in gliomagenesis by providing IGF-1, it is necessary to specifically knock out Igf1 from M/T cells without disturbing the native microenvironment of tumor initiation and progression. To achieve this goal, a previously established genetic system termed Mosaic Analysis with Double Markers (MADM) was adopted, combining the conventional conditional gene knockout system in the same model (
To specifically remove Igf1 in MIT cells, a BAC transgene was created to express Cre recombinase under the control of the M/T cell-specific Pcdh21 promoter, and this transgene together with the homozygous IGFflox/flox alleles was incorporated into the final model (
It twas validated that the hGFAP-FlpO and Pcdh21-Cre transgenes in this dual-recombinase model worked independently with each other (
To validate whether olfaction-regulated gliomagenesis mainly depend on IGF signaling, given that many other neuronal growth factors may also be released upon olfaction stimulation, in an in vivo context, the IGF1Rflox/flox homozygous alleles was brad into the CKO_Omp-hM3Dq model to simultaneously activate ORNs and block IGF-1-dependent activation of IGF1R signaling in tumor OPCs (
Despite single cell profiles of the CKO tumor clearly show that tumor OPCs expressed a panel of neurotransmitter receptor genes including AMPARs (
Interneuron are another important type of neurons in the cerebral cortex besides excitatory neurons. They regulate neuronal activity by releasing inhibitory neurotransmitter GABA. Whereas IGF-1 in the normal adult brain is mainly synthesized by interneurons, the Gad2-Cre mouse strain can express Cre specifically in interneurons and thus via Gad2-Cre; IGF-1 flox, knockout of IGF-1 in interneurons can be achieved. Combined with the MADM genetic model of glioma based on the FLP-FRT recombinase system in the present application, the tissue-specific Cre (ER)-loxP conditional knockout system enables mutually independent genetic manipulation of tumour generation.
In particular, a transgenic mouse line IGF1flox (B6.129(FVB)-Igf1tm1Dlr/J, JAX:016831) was generated, in which IGF1 was knocked out by Cre mediated recombination, combined with different cell specific Cre lines to achieve knockout of IGF1 in specific cell sources. Correspondingly, specific knockout of IGF1 in interneuron was performed in models MADM_p53FRT, NF1Rec_TG; IGF1flox; hGFAP-FlpO; and Gad2-Cre to study its impact on the occurrence and development of glioma. BrdU staining was used to study the effect of knocking out interneuron-derived IGF1 on the proliferation rate of precancerous mutant OPCs. BrdU was administered on consecutive days before mice dissection, the proliferation rate of mutant OPCs was calculated as the number of proliferative mutant cells (BrdU+GFP+MYC−) cells divided by the number of mutant cells (GFP+MYC−). It was found that the proliferation rate of mutant OPCs during the pre-transforming stage was significantly reduced after knocking down the interneuron-derived IGF-1 (
All animal procedures were based on animal care guidelines approved by the Institutional Animal Care and Use Committee of Zhejiang University School of Medicine. For anatomical experiments, both male and female mice were used. Following strains were used to build up the genetic mouse models in this study: NG2-CreER (B6.Cg-Tg(Cspg4-cre/Esr1*)BAkik/J, JAX:008538), Rosa-tdTomato (Ai9, B6.Cg-Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J, JAX:007909), p53KO (B6.129S2-Trp53tm1Tyj/J, JAX:002101), p53FRT (B6;129-Trp53tm1.1Dgk/J, JAX:017767), p53flox (FVB.129-Trp53tm1Bm/Nci, NCIMR:01XC2), NF1flox (B6;129-Nf1tm1Par/Nci, NCIMR:01XM4), IGF1Rflox (B6;129-Igf1rtm2Arge/J, JAX:012251), IGF1flox (B6.129(FVB)-Igf1tm1Dlr/J, JAX:016831), TG11ML (Igs2tm2(ACTB-tdTomato,-EGFP)Zng/J JAX:022977), GT11ML (Igs2tm1(ACTB-EGFP,-tdTomato)Zng/J, JAX:022976), Gad2-Cre (B6N.Cg-Gad2tm2(cre)Zjh/J, JAX:019022), Cx3cr1-CreER (B6.129P2(C)-Cx3cr1tm2.1(cre/ERT2)Jung/J JAX:020940), Omp-hM4Di (B6-Tg(Omp-hM4Di)1Chgliu, this study), Omp-hM3Dq (B6-Tg(Omp-hM3Dq)1Chgliu, this study), Igf1-EGFP (FVB/N-Tg(Igf1-EGFP)1Chgliu, this study), hGFAP-FlpO (B6-Tg(hGFAP-FlpO)1Chgliu, this study), Pcdh21-Cre (FVB/N-Tg(Pcdh21-Cre)1Chgliu, this study).
All mice were routinely housed in individual ventilated cages (3-5 mice per cage) in specific pathogen-free animal care facilities under 12 h light: dark cycle and given ad libitum access to food (Lab Mice Growth and Breeding Diet by Jiangsu Xietong Pharmaceutical Bio-engineering Co., Ltd.) and water. Temperature range from 20° C. to 26° C. and humidity range from 40% to 70%. Corn cob was used as bedding.
The CKO model: p53KO, NF1flox/p53flox, NF1flox; NG2-CreER/WT; Rosa-tdTomato/WT.
The CKO_Omp-hM4Di model: p53KO, NF1flox/p53flox, NF1flox; NG2-CreER/WT; Rosa-tdTomato/WT; Omp-hM4Di/WT.
The CKO_Omp-hM3Dq model: p53KO, NF1flox/p53flox, NF1flox; NG2-CreER/WT; Rosa-tdTomato/WT; Omp-hM3Dq/WT.
The CKO_IGF1R model: p53KO, NF1flox/p53flox, NF1flox; NG2-CreER/WT; Rosa-tdTomato/WT; IGF1Rflox/IGF1Rflox.
The MADM_p53FRT, NF1Rec_TG; hGFAP-FlpO; Pcdh21-Cre model: TG11ML, p53FRT, NF1-rec/GT11ML; hGFAP-FlpO/WT; Pcdh21-Cre/WT; Rosa-tdTomato/WT.
The MADM_p53FRT, NF1Rec_TG; IGF1flox; hGFAP-FlpO; Pcdh21-Cre model: TG11ML, p53FRT, NF1-rec/GT11ML; IGF1flox/IGF1flox; hGFAP-FlpO/WT; Pcdh21-Cre/WT; Rosa-tdTomato/WT.
The MADM_p53FRT, NF1Rec_TG; hGFAP-FlpO; Cx3cr1-CreER model: TG11ML, p53FRT, NF1-rec/GT11ML; hGFAP-FlpO/WT; Cx3cr1-CreER/WT; Rosa-tdTomato/WT.
The MADM_p53FRT, NF1Rec_TG; IGF1flox; hGFAP-FlpO; Cx3cr1-CreER model: TG11ML, p53FRT, NF1-rec/GT11ML; IGF1flox/IGF1flox; hGFAP-FlpO/WT; Cx3cr1-CreER/WT; Rosa-tdTomato/WT.
The MADM_p53FRT, NF1Rec_TG; IGF1flox; hGFAP-FlpO; Gad2-Cre model: TG11ML, p53FRT, NF1-rec/GT11ML; IGF1flox/IGF1flox; hGFAP-FlpO/WT; Gad2-Cre/WT; Rosa-tdTomato/WT.
The CKO_Igf1-EGFP model: p53KO, NF1flox/p53flox, NF1flox; NG2-CreER/WT; Rosa-tdTomato/WT; Igf1-EGFP/WT.
The CKO_Omp-hM3Dq_IGF1R model: p53KO, NF1flox/p53flox, NF1flox; NG2-CreER/WT; Rosa-tdTomato/WT; Omp-hM3Dq/WT; IGF1Rflox/IGF1Rflox.
Nomenclatures for the symbols used in mouse genotypes: “,” alleles positioned on the same chromosome; “;” alleles positioned on the unrelated chromosomes; “/” separate the pair of homologous chromosomes; “WT” wild type allele; “flox” the floxed allele; “KO” the null allele.
hGFAP-FlpO (B6-Tg(hGFAP-FlpO)1Chgliu) Transgene
The linearized DNA segment containing the promoter of human GFAP gene (˜5kb) with the FlpO fragment followed by Woodchuck Hepatitis Virus (WHP) Posttranscriptional Regulatory Element (WPRE) and polyadenylation signal (pA) was purified and adjusted to 1.5ng/ul for pronuclear injection. The microinjection was performed on the pronucleus of C57/BL6 mouse embryos.
The hM4Di/hM3Dq-internal ribosome entry site (IRES)-mTurquoise2-FRT-Neo (EM7-driven neomycin resistance)-FRT-WPRE-pA segment flanked by 50 bp homology arms was amplified through PCR. The purified DNA fragment was electroporated into the E. coli DH10B strain carrying the BAC (BMQ-164P15), which contained the genomic region of the Omp gene. Through the homologous recombination of the Red/ET system, the cassette was inserted into the target site of the BAC DNA. The plasmid expressing Flpe recombinase was then electroporated into the strain to remove the Neo segment in the cassette. The BAC was purified (NucleoBond BAC 100, Macherey-Nagel) and linearized by NotI. The pulsed-field gel electrophoresis was performed to verify the modified BAC DNA. The microinjection was performed on the pronucleus of C57/BL6 mouse embryos at 1.5 ng/ul.
The EGFP-FRT-Neo-FRT-WPRE-pA segment flanked by 50 bp homology arms was amplified through PCR. The purified DNA fragment was electroporated into the E. coli DH10B strain carrying the BAC vector (BMQ-250J8), which contained the genomic region of the mouse Igf1 gene. The recombination, purification, and pronuclear injection of the linearized BAC fragment was performed as described above. The mouse embryo background was FVB/N.
The Cre-FRT-Neo-FRT-WPRE-pA segment flanked by 50 bp homology arms was amplified through PCR. The purified DNA fragment was electroporated into the E. coli DH10B strain carrying the BAC vector (BMQ-313K21) for homologous recombination. The recombination, purification, and pronuclear injection of the linearized BAC fragment was performed as described above.
For genotyping methods, primer sequences, and PCR conditions see below:
PCR product: KI band: 300bps.
PCR products: Mut band: 196 bp; WT band: 297 bp.
MADM11_Eif (for all MADM cassettes, including TG11ML and GT11ML):
PCR products: Knock-in (KI) band: 230bps; WT band: 350bps.
In MADM mouse model, only KI band can be detected.
P53 KO allele:
PCR products: KI band: 700bps; WT band: 450bps.
PCR products: WT band: 479bps; Flox (Neo) band: 350 bp; KO band: 280 bp.
PCR products: WT band: 288bps; Flox band: 370 bp.
PCR products: WT band: 124bps; Mut band: 220bps; Rec band: 320bps.
PCR products: KI band: 420bps.
PCR products: WT band: 275bps; Mut band: 398bps.
PCR products: WT band: 255bps; Mut band: 393bps.
PCR products: KI band: 400bps.
PCR conditions for all PCRs: one cycle at 94° C. for 3 minutes; 32 cycles at 94° C. for 15 seconds; 58° C. for 25 seconds; 72° C. for 45 seconds; and then followed by 72° C. for 5 minutes.
To collect tissues used for cryosection, after anesthesia, mice were briefly perfused with cold PBS and then with 4% paraformaldehyde. The brains were then isolated and post-fixed in 4% PFA for 24 hours and dehydrated in 30% sucrose for 48 hours. Fixed brain tissues were embedded into optimal cutting temperature (O.C.T.) and snap-frozen before preserved in a −80° C. refrigerator. To collect fresh tissues for Western Blot, qPCR, RNA-Seq, whole exome sequencing and cell culture, tissues were acutely collected from deeply anesthetized mice without perfusion.
Glioma Cell line Cultures
Mouse glioma cell lines were collected form CKO model in our lab and maintained in complete medium (2 mM L-Glutamine, 1 mM Sodium Pyruvate (Gibco, 11360070), 10 ng/mL d-Biotin (Sigma, B4639), 1× Trace Element B (Cellgro, 25-022-CI), 1×B27 minus vitamin A (Gibco, A3353501), 1×pen/strep (Hydone, SV30010), 50 μg/mL gentamycin (Sigma, 46305) in neurobasal medium (Gibco, #12349015)). Cell lines were authenticated by tdTomato marker when histology analyzing. All cell lines tested negative for mycoplasma contamination.
OBs were dissected from P2-3 mouse pups and digested in 10 mL papain solution (1×EBSS (Sigma, E7510), 0.5 mM EDTA, 10 mM HEPES, 26 mM NaHCO3, 22.5 mM D(+)-glucose, 0.16 mg/mL L-cycteine, 20 units/mL papain (Worthington Biochem, LS003126), 250 μg/mL DNase I (Sigma, DN-25) in dd-water) for 30 min at 37° C. Papain solution was discarded and the tissue was triturated with 2 mL Diluted Trypsin Inhibitor Buffer (1×EBSS (Sigma, E7510), 10 mM HEPES, 26 mM NaHCO3, 1× ovomucoid (Worthington Biochem, LS003086), 250 μg/mL DNase I (Sigma, DN-25), 1 mg/mL BSA (equitech-bio, BAH62) in dd-water) by 1 mL pipette and was allowed to settle for 2 min. 1 mL upper cell suspension was carefully collected and additional 1 mL Diluted Trypsin Inhibitor Buffer was add to the tissue. The process was repeated until all Diluted Trypsin Inhibitor Buffer was consumed. Cell suspension was layered over the Standard Trypsin Inhibitor Buffer (1×EBSS (Sigma, E7510), 10 mM HEPES, 26 mM NaHCO3, 1× ovomucoid (Worthington Biochem, LS003086), 10 mg/mL BSA (equitech-bio, BAH62) in dd-water) and centrifuged at 1,200 rpm for 10 min. Supernatant was discarded and cells were resuspended with plating medium (25 mM D(+)-glucose, 2.5 mM NaHCO3, 0.1 mg/mL transferrin (Sigma, T-1147), 10% FBS (serapro, s601s), 2 mM L-glutamine, 0.25 mg/mL insulin (Sigma, I-6634), 1× pen/strep (Hydone, SV30010), 50 μg/mL gentamycin (Sigma, 46305) in neurobasal medium (Gibco, #12349015)) for cell culture. 24 h after initial plating, 80% medium was removed and replaced with OARAC medium (25 mM D(+)-glucose, 2.5 mM NaHCO3, 0.1 mg/mL transferrin (Sigma, T-1147), 5% FBS (serapro, s601s), 0.5 mM L-glutamine, 1× pen/strep (Hydone, SV30010), 50 μg/mL gentamycin (Sigma, 46305), 1× B27 (Gibco, 17504044) in neurobasal medium (Gibco, #12349015)). 48-72 h after initial plating, 50% medium was removed and replaced with 4ARAC medium (25 mM D(+)-glucose, 2.5 mM NaHCO3, 0.1 mg/mL transferrin (Sigma, T-1147), 5% FBS (serapro, s601s), 0.5 mM L-glutamine, 1× pen/strep (Hydone, SV30010), 50 μg/mL gentamycin (Sigma, 46305), 1× B27 (Gibco, 17504044), 4 μM AraC (MKbio, MS0237) in neurobasal medium (Gibco, #12349015)). Glioma cells were plating on OB neurons for co-culture on DIV7 with experiment medium (25 mM D(+)-glucose, 2.5 mM NaHCO3, 0.5 mM L-glutamine, 1× pen/strep (Hydone, SV30010), 50 μg/mL gentamycin (Sigma, 46305), 1×B27 minus insulin (Gibco, A1895601), in neurobasal medium (Gibco, #12349015)). Co-cultured cells were stimulated by 20 ng/mL IGF-1. Naris Occlusion
Mice were anesthetic before surgery. The silica gel plug (No: 63-625, diameter-1: 0.41 mm, diameter-2: 1.60 mm, length: 15.88 mm), trimmed to 1-1.2 cm and tied with surgical suture (5-0(3/0) 60 cm×15, Hangzhou Huawei medical applicance co. LTD), was carefully plugged into the mouse naris.
Mice were anaesthetized and fixed in the stereotaxic apparatus. Skull was exposed and drilled with a small hole (anterior, 4.40 mm; lateral, 0.80 mm; depth, 2 mm). Glioma cells resuspended in complete medium (50,000/μL) were implanted into mice OBs. The mice were dissected 21 days later and analyzed by immunofluorescent staining.
The protocol was adapted from Yang et al.41 with some modifications. Briefly, two-month-old male transgenic mice and their littermates were used for buried food test. On the first day, Want Want Crunchy Rice Balls were added to the home cages for mice being accustomed to the odor of food. Second day afternoon, all foods were removed for an overnight food deprivation. In the morning of the third day, mice were separated into individual testing cage with about 3 cm depth of clean bedding and acclimated for an hour. After acclimation, the subject mouse was moved to a temporary cage and a rice ball was buried into the bedding about 1.5 cm depth in a random corner. Then the subject was reintroduced into the testing cage. The time latency that the subject found the Rice Balls was recorded. After experiment, the mice were reintroduced to their home cages with Rice Balls. And in afternoon of the fourth day, all foods were removed again. Next morning, before acclimation in individual cage, mice received clozapine (1 mg/kg) or vehicle by intraperitoneal injection. Subsequent process was the same as the third day described above. Endpoint of time latency to find the food is 240s.
2-4 months male transgenic mice and their WT littermates were used in this set of experiments. We made following efforts to maximally remove the odor from living environment during experiments. First, the empty mouse cage was turned upside down and 200 mL distilled water was added on the tray. Wire fence was provided to avoid mice keeping touch with water directly. At the same time, the cage was ventilated by fresh air (˜20 L/min) through rubber tube (LongerPump #18) connecting the compressed air container and the mouse cage.
For Omp-hM4Di mice, the subjects were first received clozapine (1 mg/kg) by intraperitoneal injection and then put into the cage for 120 min. Then, the filter paper with 250 μL odor panel (equivalent undiluted ethyl-acetate, butanal, pentanal, ethyltiglate, propanal, methyl-propionate, and ethyl butyrate) was put into the cage with suspended ventilation for 5 min before taken out. After the odor was blown out with large air flow velocity for 1 min, ventilation was continued (˜20 L/min) for 30 min before mice was acutely dissected.
For Omp-hM3Dq mice, subjects were first put into the cage for 90 min. Then, mice received clozapine (1 mg/kg) by intraperitoneal injection, after which ventilation (˜20 L/min) was continued for 30 min before mice was acutely dissected.
The protocol was adapted from Ludewig et al.42 with some modifications. Mice were administrated with 200 μL Evans Blue (2%) by i.p injection. After six hours of EB injection, the mice were anaesthetized and then perfused with cold PBS. 100 mg tissue for each sample from multiple organs (as indicated in the
All mouse frozen tissues were cryo-sectioned into 20 μm thickness. For routine staining, the slides were fixed in ice-cold 2% PFA for 15 minutes. After washed in 1×PBS (3 times, 10 minutes each), the slides were briefly rinsed with 1×PBT (0.3% Triton X-100 in 1×PBS) and then incubated with the blocking solution (5% normal donkey serum, 0.3% Triton X-100, 0.1% NaN3 in 1×PBS) for 20 minutes. The slides mounted with primary antibodies were then incubated in the wet box at 4° C. overnight. Next day, the slides were washed in 1×PBT (4 times, 10 minutes each) before incubated with secondary antibodies (diluted in 1×PBT) in foil-wrapped wet box at 4° C. overnight. The third day, the slides were washed in 1×PBT (4 times, 10 minutes each) and DAPI solution (25 ng/ml in 1×PBS, 20 minutes). After washing with 1×PBS for 5 minutes, the slides were mounted with the mounting solution (65% glycerol in 1×PBS) and covered with coverslips.
In the first day of staining, the tissue sections were immersed in 1.5M HCl (in 1×PBS) for 30 minutes at 37° C. and washed with 1×PBS (3 times, 10 minutes each) before the incubation of the blocking solution. The staining procedure followed is the same as described above.
The procedures of the first two days are the same as the routine staining, while donkey anti-host animal-Biotin conjugates (diluted in 1×PBT) were used as secondary antibodies. On the third day, after washing in 1×PBT for 5 minutes, the slides were incubated with Streptavidin Alexa Fluor 405 conjugate (diluted in 1×PBT) at room temperature for 3 hours. Then the slides were washed in 1×PBT (3 times, 10 minutes each) and 1×PBS for 5 minutes before mounted. Antibody Dilution
Chicken anti-GFP, 1: 500; Goat anti-c-Myc, 1: 200; Goat anti-DsRed, 1: 100; Goat anti-Iba1, 1: 250; Goat anti-PDGFRα, 1: 200; Goat anti-PDGFRβ, 1: 200; Mouse anti-APC-CC1, 1: 50; Mouse anti-NeuN, 1: 250; Rabbit anti-c-Fos(9F6), 1: 200; Rabbit anti-CD68, 1:1000; Rabbit anti-GFAP, 1: 800; Rabbit anti-Iba1, 1: 250; Rabbit anti-Ki67, 1: 500; Rabbit anti-Olfactory Marker Protein (OMP), 1: 500; Rabbit anti-Olig2, 1: 1000; Rabbit anti-TBR2 (ab183991), 1: 1000; Rabbit anti-TBR2 (ab216870), 1: 100; Rabbit anti-Tyrosine Hydroxylase (TH); 1: 500; Rat anti-BrdU, 1: 500; Rat anti-CD34, 1: 200; Alexa Fluor 488 Donkey Anti-Chicken, 1: 250; Alexa Fluor 488 Donkey Anti-Goat, 1: 250; Alexa Fluor 488 Donkey Anti-Mouse, 1: 250; Alexa Fluor 488 Donkey Anti-Rabbit, 1: 250; Alexa Fluor 488 Donkey Anti-Rat, 1: 250; Alexa Fluor 555 Donkey Anti-Goat, 1: 500; Alexa Fluor 647 Donkey Anti-Goat, 1: 250; Alexa Fluor 647 Donkey Anti-Mouse, 1: 250; Alexa Fluor 647 Donkey Anti-Rabbit, 1: 250; Biotin-SP AffiniPure Donkey Anti-Mouse, 1: 200; Cy3 AffiniPure Donkey Anti-Mouse, 1: 500; Cy3 AffiniPure Donkey Anti-Rabbit, 1: 500; DyLight 405 Streptavidin, 1: 100.
Single-Molecule Fluorescent In Situ Hybridization (smFISH)
The sample pretreatment protocol was adapted from RNAscope® Universal Pretreatment Kit (ACD, No. 322380). The fresh frozen mouse slices were immediately dried at 60° C. baking oven for 20 minutes after taken out from −80° C. refrigerator, then post-fixed in 4% PFA at 4° C. for 10 minutes. The slices were dehydrated in an EtOH series of 50%, 70%, 90%, 100% for 5 minutes each, followed by dried at room temperature for another 5 minutes. A barrier surrounding the tissue was drawn in the slices. Samples were permeabilized in H2O2 for 10 minutes and then rinsed in ddH2O. The slices were degraded with Protein Plus instead of Protein IV at 40° C. for 30 minutes, followed by washed in 1×PBS.
Probe signals were detected by FISH using RNAscope® 2.5 HD Detection Kit (RED) (ACD, No. 322350), following the protocol of the kit: 1) add probe, incubate at 40° C. for 2 hours and wash slices twice in Wash Buffer at room temperature for 2 minutes, 2) add AMP1-6 solution at slices successively and wash in Wash Buffer each time after incubate slices in Amp solution, 3) add RED-B with RED-A at room temperature for 10 minutes, 4) wash once in distilled H2O. After hybridized the probes and detected the signals, the slices were washed in PBT for 1 minute. The tissue sections were undergone 20 minutes block incubation at room temperature in blocking solution and incubated with primary antibodies. The following staining steps were the same as described in mouse normal staining.
Tumor brains were reconstructed by Neurolucida (MBF Bioscience). The fluorescence images of brain sections were imported to the software. The contour of brain, corpus callosum and tumors were traced by lines with different colors manually and then re-constructed automatically.
Brain Clearing with the PEGASOS Procedure
The protocol was adapted from Jing et al.40 with some modifications. Immediately following transcardiac perfusion with PBS and 30 mL 4% PFA, brains were fixed in 4% PFA overnight at 4° C. Next, brains were decolourized with 25% EDTP (Sigma-Aldrich, 122262) for 2 days at 37° C. under constant shaking. Serial delipidation was then performed at 37° C. under constant shaking for 6 hours with solutions: 30% tert-Butanol (tB, Sigma-Aldrich; 471712) solution, 50% tB solution and 70% tB solutions. Following delipidation, samples were dehydrated in tB-PEG solution at 37° C. for 2 days. Finally, samples were immersed in the BB-PEG clearing medium for 1 day. Samples could be preserved in the BB-PEG clearing medium at room temperature for storage and imaging. The images were obtained using Nuohai LS18 tiling light sheet microscope. Three-dimensional reconstruction was performed with imaris 9.0 (Bitplane).
For characterization of Omp-hM4Di and Omp-hM3Dq mice and acute stage analysis of CKO_Omp-hM3Dq model, 1 mg/kg clozapine was administrated by intraperitoneal injection (i.p.). For analysis of tumor stage of CKO_Omp-hM3Dq model, 1 mg/kg clozapine was administrated by i.p. (twice injection per week, from P150 to P210). For analysis of pre-transforming stage and tumor stage of CKO_Omp-hM4Di model, clozapine was administrated by dissolving in drinking water (final 0.01 mg/mL).
Tamoxifen was administrated by intragastric administration at the dose of 200 μg/g body weight on consecutive five days.
BrdU was administrated by i.p. at the dose of 50 μg/g body weight on consecutive days as indicated. Mice were dissected at least 1 hour after last injection.
Blood was collected by intracardial puncture from anaesthetized mice into heparinized 1 ml syringes. Heparin was used in a range of 30 units/ml. Red blood cells were lysed in ACK lysing buffer (Gibco, A10492) at room temperature for 5 min. Cell suspensions were spun down at 300 g for 5 min. The cell pellet was then washed with Hank's balanced salt solution (HBSS) and spun for 5 min at 300 g. The cells in the pellet (1-2×105 cells) were used in fluorescence assays. Antibodies used for flow cytometry were directed against the following mouse antigens: Pacific Blue anti-mouse CD45(30-F11), PE anti-mouse Ly-6G(1A8), PerCP/Cyanine5.5 anti-mouse CD11c, FITC anti-mouse CD19(1D3), APC anti-mouse CD3(17A2), APC/Cyanine7 anti-mouse/human CD11b(M1/70) from Biolegend. Dilution: 1: 200.
Real-Time qPCR
OBs, dissected from fresh mouse brains, were lysed in the TRIzol and stored at −80° C. refrigerator before use. Chloroform was added to samples and the tubes must be thoroughly vortexed. The tubes were centrifuged at 12,000 g for 15 min at 4° C. Upper aqueous phase was removed to a new tube and added with 250 μL isopropyl alcohol. After inverted a few times to mix, the samples were incubated for 10 min and centrifuged at 12,000 g for 10 min at 4° C. Supernatant was discarded by 1 mL pipet tip. After washing the RNA pellet with 950 μL 75% ethanol, the tubes were centrifuged at 7,500 g for 5 min at 4° C. The supernatant was discarded by first 1 mL then 10 μL pipet tips. The RNA pellet was dried and resuspended in RNase free water. Purified RNA was converted to cDNA by First Strand cDNA Synthesis Kit (Thermo Scientific, #K1622) and amplified by SYBR Green Master Mix (Yeasen) at Bio-Rad CFX96. All data were normalized to the Gapdh or Actin reference gene control.
OBs were dissected from fresh mouse brains and lysed in the cold RIPA buffer with the protease inhibitor cocktail and phosphatase inhibitor cocktail tablets. Samples were centrifuged at 12,000 g for 2 min at 4° C. and the supernatant was reserved. The concentration of total protein was normalized by the BCA protein quantification kit (Yeasen). Samples mixed with loading buffer were subjected to the SDS-PAGE for electrophoresis and transferred to PVDF membranes as routine procedure. PVDF membranes were incubated with blocking solution (3% skimmed milk powder in 1×TBST) for 1.5 h and primary antibody solution (diluted in blocking solution) overnight. After washes with TBST (4 times, 15 min each), membranes were incubated with secondary antibodies coupled to horseradish peroxidase (diluted in TBST, peroxidase Donkey Anti-Mouse, 1: 5000; peroxidase Donkey Anti-Rabbit, 1: 5000.) for 1 h. WB bands were detected by using ECL detection kit.
RNA-Seq was performed by Shanghai Personal Biotechnology Co., Ltd. The quality of library was confirmed by Agilent 2100 Bioanalyzer. After the validation of library quality, sequencing was performed by Illumina NextSeq500 PE150.
For tissue sequencing, raw data was filtered by removing polluted reads with Cutadapt (Version 1.2.1) and quality control (not lower than Q20). Clean reads were aligned to the reference genome Mus_musculus.GRCm38.dna.primary_assembly.fa (38.86) in Ensembl by Tophat2. Quality of alignment was confirmed though insert length and sequence-based duplication by RseQC. Read counts were calculated by HTSeq 0.6.1p2 (http://www huber.embl.de/users/anders/HTSeq) and normalized by RPKM (Reads Per Kilo bases per Million reads). Differential gene expression analysis was performed by DESeq (Version 1.18.0). The screening threshold was fold change >1.5 and P-value <0.05.
For sequencing of tumor cells from co-cultures, raw data was filtered by removing adapter with Cutadapt (Version 3.4) and quality control (not lower than 25). Clean reads were aligned to the reference genome Mus_musculus.GRCm39.dna.primary_assembly.fa (39.103) from Ensembl by STAR (Version 2.7.9a). Read counts were calculated by featureCounts (Version 2.0.1). The feature was selected as Exon, and only reads with mapping quality score greater than 25 were retained. The batch effect was removed by sva (Version 3.63.0) for samples sequenced at different times. Differential gene expression analysis was performed by DESeq2 (Version 1.28.1). The screening threshold was fold change >1.5 and P-adj<0.05.
Six samples from two CKO mice (one normal brain tissue, two tumor tissues per mouse) were used for Whole Exome Sequencing by Novegene. The insert size of library was tested by Agilent 2100. After the validation of library quality, sequencing was performed by Illumina HiSeq PE150. Raw data was filtered by removing reads with adaptor, reads with more than 10% undetermined bases and read with more than 50% low quality bases. Effective sequencing data was aligned by BWA and Samblaster and processed by Samblaster further. Somatic SNV was processed by muTect. Somatic INDEL was performed by Strelka. Somatic CNV was performed by freec (http://bioinfo-out.curie.fr/projects/freec/).
Quantification of cFos+ Cells
For quantification the distribution of cFos+ cells, GL was separated to eight parts (Lateral, Dorsal-Lateral, Dorsal, Dorsal-Medial, Medial, Ventral-Medial, Ventral, Ventral-Lateral) by same angle (45°). The number of cFos+ cells and corresponding areas were recorded. The density of cFos+ cells was calculated by the number of cells dividing by the corresponding area.
For characterization of hM4Di/hM3Dq mice, the density of cFos+ cells in GL was calculated by the number of cells in the Lateral and Medial GL dividing by the corresponding area (Areal Density). The density of cFos+ cells in ML was calculated by the number of cells in the ML dividing by the length of the ML (Linear Density).
BrdU was administrated by consecutive days before mice dissection as indicated. Region of interested (ROI) was circled without supervised of proliferation cells and was circled only by different layers through DAPI. Areas of ROIs were recorded and the number of proliferative mutant cells (BrdU+, Olig2+, Dsred+ cells in the CKO model and BrdU+, GFP+, cMyc− cells in the MADM model) and mutant cells (Olig2+, Dsred+ cells in the CKO model and GFP+, cMyc− cells in the MADM model) in ROIs were counted. Density of proliferative mutant OPCs was calculated by the number of proliferative mutant OPCs dividing by the relative areas of ROIs. Density of mutant OPCs was calculated by the number of mutant cells dividing by the relative areas of ROIs. Proliferation rate of mutant OPCs was calculated by density of proliferative mutant cells dividing by density of mutant cells.
Brains were serially sectioned and every 14 slices were analyzed. Putative tumor areas (defined by mass of tdT+ cells in the CKO model) were outlined. We analyzed all available tumor mice (N=225) from our CKO models, and confirmed that 221 (98.2%) were fully labeled by tdTomato. Only 4 out of 225 (1.8%) were found to contain non-labeled tumors. tdT-labeling efficiency of tumor cells was confirmed by quantification of tdT+ cell percentage in Ki67+ cells., demonstrating that tdT is a reliable marker for tumors. And only when more than two tdT+, Ki67+ cells were found, the putative tumor area could be defined as a bona tumor. Representative tumor areas were further confirmed by H&E staining as showed in
OBs were serially sectioned and every four slices were analyzed (about 40 slices per OB). Putative tumor areas (defined by mass of tdT+ cells in the CKO model and GFP+, cMyc− cells in the MADM model) were outlined. Only when more than two tdT+, Ki67+ cells or GFP+, cMyc−, Ki67+ cells were found, the putative tumor area could be defined as a bona tumor. Tumor volume was calculated by the sum of tumor areas in every analyzed slice multiplied by the distance between two adjacent slices (80 μm).
In the CKO model, tumors were frequently found in the OB as showed, leading to the model that tumors arose in the GL layer then migrated to the EPL and GRL, from the outer to the inner side of the OB. Therefore, we only calculated the invasiveness in the inner side. Core tumor area was defined as the tdT+ cell density more than 70%. Normal area was defined as the tdT+ cell density in the granule cell layer far from the tumor. Tumor invasiveness was defined as the distance between the core tumor area and normal area.
Statistical analysis was performed using Graphpad Prism 9. Comparisons of two groups were performed by one-sided t-test. Comparisons of more than two groups were performed using one-way ANOVA with Dunnett's multiple comparison post-hoc test. The number of subjects, samples and the specific statistical test performed are indicated in figure legends. Data is presented as mean±SEM. Differences in means were considered statistically significant at p<0.05.
Source data files are provided with this paper. The RNA-seq (accession code GEO ID: GSE160659 and GSE189940) and whole exome sequencing (GSE159427) raw data were uploaded to Gene Expression Omnibus. All other data supporting the findings of this study are available from the corresponding author on request.