Method for determining hair cycle markers

Information

  • Patent Application
  • 20060204992
  • Publication Number
    20060204992
  • Date Filed
    February 28, 2006
    18 years ago
  • Date Published
    September 14, 2006
    18 years ago
Abstract
The invention relates to a method for determining hair cycle markers in vitro, test kits and biochips which are used to determine hair cycle markers and to the use of proteins, mRNA molecules, proteins or fragments thereof as hair cycle markers. The invention also relates to a test method which is used to detect the effectiveness of cosmetic and pharmaceutical active ingredients which influence the hair cycle, in addition to a screening method which is used to identify cosmetic or pharmaceutical active ingredients which influence the hair cycle and to a method for the production of a cosmetic and pharmaceutical preparation which influences the hair cycle.
Description
FIELD OF THE INVENTION

This invention relates to a process for determining hair cycle markers in vitro, to test kits and biochips for determining hair cycle markers and to the use of proteins, mRNA molecules or fragments of proteins or mRNA molecules as hair cycle markers; to a test method for demonstrating the effectiveness of cosmetic or pharmaceutical active substances for influencing the hair cycle and to a screening process for identifying cosmetic or pharmaceutical active substances for influencing the hair cycle and to a process for the production of a cosmetic or pharmaceutical preparation for influencing the hair cycle.


BACKGROUND OF THE INVENTION

Besides its actual biological function, the hair has a psychosocial function which is not to be underestimated. Unwanted hair loss or excessive hair growth can have a serious negative impact on the self-consciousness of the person affected (Paschier et al. (1988), Int. J. Dermatol. 27: 441-446). Except for rare congenital hair diseases caused by mutations in keratins or other structural proteins, excessive hair loss and excessive hair growth are caused by a disturbed hair cycle. Hair follicles pass through a cycle of three stages: anagen (growth phase), catagen (regression phase) and telogen (resting phase). Androgenic alopecia is characterized, for example, by an increasingly shorter anagen phase coupled with a reduction in size of the hair follicle (see, for example, Paus and Cotsarelis (1999), New Eng. J. Med., 341: 491-497).


Assigning the hair follicle to a stage of the hair cycle is essentially done on the basis of a microscopic-morphological analysis of the hair. Knowledge of the molecular mechanisms which play a role in the progression through the hair cycle is only fragmentary. Consequently, molecular markers characteristic of a certain stage of the hair follicle are lacking as are molecular targets through which the state of the hair follicle can be influenced. Although a number of different markers of hair-covered human skin were identified in DE 102 60931 to Applicants, those markers are characteristic of the anagenic hair follicles which make up most of the hair-covered skin.


The inadequate number of markers characteristic of other stages of the hair cycle leads to deficiencies in the general description of the growth phases of the hair in vivo, in cultivated hair follicles in vitro (Philpott Model; Philpott M. et al. (1990). Human Hair Growth in vitro; J. Cell Sci. 97: 463-471, 1990) and in reconstructed hair follicle models. In the latter systems in particular, morphological classification in stages of the hair cycle is no longer readily possible. Hair follicles cultivated in vitro are evaluated by microscopic measurement of the growth in length with a measuring ocular, including photographic documentation, and by histological evaluation of complicated vertical sections. This form of analysis is very time-consuming and requires a large number of hair follicles to cover the individual variations. For evaluating reconstructed hair follicle models, characterization via molecular markers of the corresponding stage is crucially important.


Besides the ratio of proliferation to apoptosis in the follicles, the DNA/protein and keratin synthesis and the ATP content, markers for the growth phase of hair follicles have hitherto been purely individual markers, for example matrix proteins, such as collagen type IV, fibronectin and laminin (Couchman, J. R. et al. (1985), Dev. Biol. 108: 290-298), growth factors, such as Transforming Growth Factor TGF-β1 and TGF-β2 (Foitzik et al. (2000), FSEB, J. 14: 752-760; Tsutomu, S. et al. (2002), J. Invest. Dermatol. 118: 993-997) and Fibroblast Growth Factor FGF-7 (Herbert, J. M. et al. (1994), Cell 78: 1017-1025). However, problems have arisen from the fact that many of these markers resulted from studies of the synchronized hair cycle of mice and cannot readily be applied to the human hair cycle.


In addition, the fragmentary knowledge of the molecular mechanisms playing a role in the progression through the hair cycle leads to an inadequate number of targets which are available for cosmetically or pharmacologically influencing the hair follicles. Thus, the enzyme 5α-reductase (type II) is the only validated target for androgenic alopecia. Inhibition of this enzyme, for example by the active principle finasteride, results in a reduced concentration of dihydrotestosterone in the skin and in the serum and hence in inhibition of the androgen-dependent miniaturization of the hair follicles. The disadvantage of finasteride undoubtedly lies in the side effects associated with its use: pregnant women in particular should not use finasteride. In addition, finasteride may not be used in cosmetic formulations.


The analysis of molecular markers in hair follicles is complicated as only relatively small quantities of mRNA can be obtained from the follicles and the concentration of such mRNA molecules is quite low, e.g., only a few to several hundred copies per cell in the hair follicles. Weakly expressed genes have only been accessible to existing analysis techniques with great difficulty, if at all, but can play a crucial role in the hair follicle.


There has never been a description of the transcriptome, i.e. the totality of all transcribed genes, of the hair follicles in various stages of the cell cycle.


Transcriptome analyses of the skin by various processes, including SAGE™ analysis, are already known. However, they are conducted with isolated keratinocytes (in vitro) or epidermis explantates which, as explained above, are not models representative of the complex events in the skin.


It is known from applicants' DE-A-101 00 127.4-41 that skin cells can be subjected to SAGE™ analysis in order to characterize the overall transcriptome of the skin. Applicants' DE-A-101 00 121.5-41 discloses the identification of markers of stressed or aged skin on the basis of a comparative SAGE™ analysis between stressed or aged skin and unstressed or young skin. However, there is no information on specific hair cycle markers in either of these documents.


It is known from J. Invest. Dermatol. 2002 July; 119(1): 3-13; “A serial analysis of gene expression in sun-damaged human skin”; Urschitz, J. et al., that markers of sun-damaged skin can be determined by a comparative SAGE™ analysis of whole skin explantates taken from in front of the auricle (sun-damaged) and behind the auricle (protected from the sun). Knowledge of specific hair cycle markers cannot be acquired from this publication either.


Accordingly, a need exists for the identification of genes which are markers important to the hair cycle.


SUMMARY OF THE INVENTION

In accordance with the present invention, a large number of the genes important to the hair cycle have been identified thereby enabling further genetic characterization of hair cycle regulation and screening processes for identifying active substances for influencing the hair cycle.


In one aspect, an in vitro method for determining hair cycle phase in humans is provided. An exemplary method entails providing a plurality of genetically encoded markers isolated from hair covered human skin or from human hair follicles which are differentially expressed at the anagenic phase of the hair cycle when compared to expression in cells in the catagenic phase of the hair cycle. A sample of hair covered skin or human hair follicles is obtained and analyzed for the presence and optionally the quantity of at least one genetically encoded molecule which is differentially expressed in anagenic and catagenic hair follicles. The sample is then designated as comprising healthy cells in the anagenic phase of the cycle if it contains markers which are expressed at higher levels in anagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if it contains molecules which are expressed at higher levels in catagenic hair follicles. The genetically encoded markers encompassed by the foregoing method comprise at least one mRNA molecule, at least one protein or polypeptide or fragments thereof.


Tables 2 to 9 provide a plurality of markers that are differentially expressed in anagenic phase of the hair cycle when compared to the catagenic phase of the hair cycle. Such markers can be used to advantage in the methods of the present invention.


In another embodiment of the invention, the expression levels of at least two molecules in the sample which are differentially expressed in cells from the anagenic phase of the hair cycle when compared to expression levels in the catagenic phase of the hair cycle are quantified and the expression ratios of the at least two molecules determined thereby forming an expression quotient. The expression ratios obtained are compared with those in column 5 of Tables 2 to 6 and the sample designated as healthy cells in the anagenic phase of the hair cycle if the expression ratios observed in the follicles correspond to the ratios observed in anagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the expression ratios correspond to those observed in catagenic hair follicles.


Also encompassed by the present invention is a test kit for determining hair cycle phase in a human subject. An exemplary test kit comprises reagents suitable for performing the method described above. Thus, a kit of the invention comprises a plurality of probes corresponding to those provided in Tables 2-9 which are optionally detectably labelled, a solid support such as a biochip and physiological buffers for assessing gene expression levels. The kit may also comprise means for obtaining genetically encoded molecules or markers from hairy skin or hair follicles.


Thus, in yet another aspect of the invention, a biochip for determining hair cycle phase in human beings in vitro is provided comprising a solid, i.e. rigid or flexible, carrier and a plurality of probes immobilized thereon which are capable of specifically binding to at least one molecule selected from the group consisting of SEQ ID NO:1 to SEQ ID NO: 570 or the corresponding gene product. SEQ ID NOS:1-570 represent markers for determining hair cycle phase in human beings in vitro Exemplary markers are selected from the group consisting of at least one molecule having a Swissprot Accession Number provided in column 8 of Table 8, a Swissprot Accession Number provided in column 9 of Table 7, a Swissprot Accession Number provided in column 9 of Table 9, a UniGene Accession Number provided in column 7 of Tables 2 to 6, and a Swissprot Accession Number in column 8 of Tables 2 to 6.


Also provided in the present invention is an in vitro method for identifying a pharmaceutically active agent which modulates the hair cycle. An exemplary method entails providing hair covered human skin or human follicles comprising cells; determining the phase of the hair cycle of said cells as described above; contacting the cells with the agent at least once; and repeating the determination of the phase of the hair cycle to determine whether said agent alters the phase of the hair cycle. In a preferred embodiment, the method is performed on a biochip. A test kit for performing the method described above is also provided herein. Finally, a pharmaceutical preparation comprising the agent identified in the foregoing screening method having efficacy against diseases or impairment of hair and its growth in a pharmaceutically acceptable carrier is also disclosed.


Diseases or disorders of the hair cycle include, for example pili torti (corkscrew hair, twisted hair), monilethrix (spindle hair), woolly hair (kinked hair), hair shaft defects with breakages [Trichorrhexis nodosa, Trichorrhexis invaginata, Trichoschisis, trichoptilosis (split hair shafts)], hair shaft defects through metabolic disorders, pili recurvati, rolled hair, changes in hair color [heterochromy, albinism, poliosis (acquired patch-like absence of pigment in the hair), canitis (physiological graying)], hypertrichoses, hirsutism, alopecias (irreversible alopecia: for example, androgenetic alopecia in men and women); reversible alopecia: for example symptomatic diffuse alopecias through infections, chem. noxas and medicaments, hormonal disorders, diseases, etc.) and alopecia greata.







DETAILED DESCRIPTION OF THE INVENTION

The totality of all the mRNA molecules synthesized at a certain time by a cell or a tissue is known as a transcriptome. The technique of serial analysis of gene expression (SAGE™) (Velculescu, V. E. et al., 1995, Science 270, 484-487) is used for understanding the transcriptome of human hair follicles. This technique facilitates the simultaneous identification and quantitation of the genes expressed in hair follicles. Comparison of the transcriptome of anagenic hair follicles with the transcriptome of catagenic hair follicles identifies those genes which are important for these stages of the hair cycle. These may be genes which are highly expressed in anagenic hair follicles or conversely, genes which are only weakly expressed when compared to expression levels observed in catagenic hair follicles.


Although gene expression can also be analyzed by the quantitation of specific mRNA molecules (for example Northern Blot, and/or RNase protection experiments), only a limited number of genes can be measured by these techniques. Theoretically, SAGE™ analysis could be replaced by MPSS (massive parallel signature sequencing) or by techniques based on differential display. In practice, however, the SAGE™ technique is faster and more reliable than alternative methods and is therefore preferred.


The SAGE method is based on two principles. First, only a short nucleotide sequence from the 3′ region of the mRNA is required for identification of the gene. A sequence of nine base pairs allows the differentiation of 262,144 (49) transcripts. This is more than the number of all the genes present in the genome. Second, concatenation of the short sequences allows efficient automated analysis by sequencing. An advantage of this technique not to be underestimated is the ability to determine the reading direction of the genes. If two opposite transcripts of a gene in the reading direction are started, this can only detected by the SAGE technique.


Typically, double-stranded cDNA is synthesized with biotinylated primers from polyA-RNA. The cDNA is digested with a restriction enzyme (anchoring enzyme) recognizing 4 bp which statistically cuts all 256 bp. The 3′ end of the cDNA is isolated by binding to Streptavidin beads. The sample is divided into two halves and the cDNA end is ligated with a linker (1 or 2) which has a recognition site for a type IIS restriction enzyme (tagging enzyme). This cuts up to 20 bp staggered from the asymmetric recognition site. This results in the formation of a short sequence (tag) tied to the linker which is unique to each gene. In order to obtain relatively large quantities of material, the linker1 tags are ligated with the linker2 tags after the projecting ends have been filled (linker ditag). The ligation products are amplified with linker-specific primers (1 or 2). The linker no longer in use is then released by another enzymatic digestion with the anchoring enzyme. The isolated ditags are concatenated by ligation (concatemers), cloned in a vector and transfixed in cells. From the cells, the concatemers are amplified via PCR and, finally, sequenced.


Another promising method is the microarray or chip technique. Here, entire gene libraries are placed on a chip. The genes on the chip are hybridized with fluorescence-marked cDNA generated from the mRNA of the tissue sample to be analyzed. By comparing anagenic with catagenic follicle material, all interesting genes can be detected in a single test on the basis of the differences in fluorescence. However, this does presuppose a knowledge of the clones in the gene library.


A very advantageous analysis method is the combination of SAGE analysis with the microarray technique. The SAGE method provides new or known genes which can be meaningful to the hair cycle. These are projected onto a chip with which samples of individual candidates can be measured.


Human hair follicles from healthy female donors were used for the SAGE™ analysis. The follicles were isolated from pieces of tissue taken from above the ear of the donor and were divided on the basis of their morphology into catagenic and anagenic hair follicles. In order to minimize the detection of donor-specific variances, the catagenic and anagenic hair follicles of a total of five donors were combined. The same number of catagenic and anagenic follicles of a donor were used and the total number of follicles of the individual donors were assimilated to one another.


The SAGE™ analysis was carried out as described in Velculescu, V. E. et al., 1995 Science 270, 484-487. A SAGE™ bank for catagenic hair follicles and one for anagenic hair follicles were analyzed. For further analysis, the two SAGE™ banks were standardized to the mean tag count. The two banks were compared with one another in order to identify genes demonstrating hair-cycle-specific regulation. As expected for two banks of the same tissue type, the tag repertoire of the two follicle banks is largely similar. Despite the similarity of the tissue and the relatively small number of tags, 197 tags show a differential expression with a significance of p>0.05. The significance was determined as described in Audic, S., Clayerie, J. M. (1997): “The significance of digital gene expression profiles”, Genome Res. 7: 986-95.


Table 1 lists markers for which a differential expression as a function of the stage of the hair cycle has already been described. They serve as positive controls for the experiment. Table 1 shows

    • the relative expression frequency in anagenic hair follicles in column 1,
    • the relative expression frequency in catagenic hair follicles in column 2,
    • the quotient of the relative expression frequency determined in anagenic hair follicles and the relative expression frequency determined in catagenic hair follicles in column 3,
    • the significance of the values shown in column 3 in column 4,
    • the UniGene Accession Number in column 5
    • the Swissprot Accession Number in column 6 and
    • the name of the gene from which the corresponding tag originates in column 7.


The quotient in column 3 indicates the strength of the differential expression, i.e. the factor by which the particular gene is expressed more strongly in anagenic hair follicles than in catagenic hair follicles or vice versa.


The particular genes or gene products for Tables 1-6 are disclosed under their UniGene Accession Number in the data bank of the National Center for Biotechnology Information (NCBI). This data bank is accessible on the world wide web at ncbi/nim.nih.gov. In addition, the genes or gene products are directly accessible at the following world wide web addresses ncbi.nlm.nih.gov/UniGene/Hs.Home.html or ncbl.nlm.nih.gov/genome/guide.


Mice comprising inactivated vitamin D receptor demonstrate hair loss. It was shown that, after stimulation of the anagen stage by shaving, mice with an inactive vitamin D receptor are unable to initiate the hair cycle (Kong et al. (1002), J. Invest. Dermatol., 118: 631-8).


Thrombospondin-1 was shown to play a role in the induction of hair follicle involution and in vascular degradation during the catagen phase (Yano et al. (2003), J. Invest. Dermatol., 120: 14-9). Whereas no expression of the thrombospondin can be detected in the early to middle anagen phase, high expression levels can be detected during the catagenic phase in accordance with the expression data found there.


Although the role of neurotrophin-5 for human hair follicles has never been described, studies of the family member neurotrophin-3 in murine hair follicles have been conducted. Maximal expression of neutrotrophin was observed in the catagenic stage (Botchkarev et al. (1998), Am. J. Pathol., 153: 785-99). A corresponding expression pattern was found there for neurotrophin-5.


In the course of SAGE™, the number of individual tags was determined in a first step and, where possible, assigned to genes or inputs in the UniGene data bank. By comparison of the tags in the various SAGE™ banks, differentially expressed genes can be identified. Accordingly, a first classification was made based on the significance of the differential expression of the identified genes as genes which are significantly differentially expressed are considered marker genes for particular stages of the hair cycle.


The genes for which a significant differential expression was found are listed in Tables 2 to 6.


Tables 2 to 6 contain a detailed list of the genes differentially expressed in anagenic hair follicles and in catagenic hair follicles, as determined by the process according to the invention, with an indication of

    • the running sequence identifier (SEQ ID NO:) in column 1,
    • the tag sequence used in column 2,
    • the relative expression frequency in anagenic hair follicles in column 3,
    • the relative expression frequency in catagenic hair follicles in column 4,
    • the quotient of the relative expression frequency determined in anagenic hair follicles and the relative expression frequency determined in catagenic hair follicles in column 5,
    • the significance of the values shown in column 5 in column 6,
    • the UniGene Accession Number in column 7,
    • the Swissprot Accession Number in column 8 and
    • a brief description of the gene or gene product in column 9.


The quotient in column 5 indicates the strength of the differential expression, i.e. the factor by which the particular gene is expressed more strongly in anagenic hair follicles than in catagenic hair follicles or vice versa.


Table 2 lists all the genes which exhibit at least five-fold differential expression levels in anagenic hair follicles when compared to levels observed in catagenic hair follicles with a p value of p<0.01 (significance>2.0).


Table 3 lists all the genes which exhibit at least two-fold differential expression levels in anagenic hair follicles when compared to those observed in catagenic hair follicles with a p value of p<0.01 (significance>2.0).


Table 4 lists all the genes which exhibit at least 1.3 fold differential expression levels in anagenic hair follicles when compared to those observed in catagenic hair follicles with a p value of p<0.01 (significance>2.0).


Table 5 lists all the genes which exhibit at least five-fold differential expression levels in anagenic hair follicles when compared to levels observed in catagenic hair follicles with a p value of p<0.05 (significance>1.3).


Table 6 lists all the genes which exhibit at least two-fold differential expression levels in anagenic hair follicles when compared to those observed in catagenic hair follicles with a p value of p<0.05 (significance>1.3).


The clear expression difference in the ribosomal RNAs is particularly noticeable. Slight expression differences in ribosomal RNAs have hitherto been described as typical artefacts of SAGE™. In the present case, however, the expression differences are strikingly high and uniform. There is a much stronger expression of rRNA in anagenic hair follicles than in catagenic hair follicles. Accordingly, the strength of expression of ribosomal RNA is itself a marker criterion for anagenic hair follicles.


In addition, there are some other biologically interesting expression differences. First, the expression of attractin in catagenic hair follicles is increased. Attractin is a protein from the agouti/melanocortin signal transduction pathway. The gene product plays a role in determining the hair color of mice (Gunn et al. (1999), Nature, 398: 152-6; Barsh et al. (2002), J. Recept. Signal Transduct. Res., 22: 63-77).


In addition, cobalamin adenosyl transferase, an enzyme in the vitamin B12 metabolism pathway, is induced in catagenic hair follicles. In human beings, a vitamin B12 deficiency leads to depigmentation of the hair (Mori et al. (2001), J. Dermatotol. 28: 282-5). Dopachrome tautomerase, an enzyme involved in the biosynthesis of melanin, is also induced in catagenic hair follicles. All the genes mentioned above are relevant to hair follicle biology, particularly to pigmentation, but have not hitherto been described in connection with regulation of the hair cycle.


It is also noticeable that the transcription factors Fos-B and Egr1 are induced in catagenic hair follicles. These two transcription factors belong to the group of so-called immediate-early genes and have wide-reaching regulatory functions.


On the other hand, the angiopoietin-like protein CDT6 is repressed in catagenic hair follicles. This protein is assumed to have a regulatory function in angiogenesis (Peek et al. (2002), J. Biol. Chem., 277: 686-93). Control of angiogenesis and hence the supply of blood to the hair follicle is coupled to the hair cycle (see above, thrombospondin-1).


Also noteworthy is the induction of the 14-3-3 sigma protein, stratifin, and the simultaneous repression of the 14-3-3 tau/theta protein. The family of 14-3-3 proteins regulate a number of enzymes, including those involved in primary metabolism and the cell cycle. They also have a chaperone function. They can activate the transcription of inducible genes and regulate signal transduction and apoptosis processes. A role in the differentiation of keratinocytes was described in particular for the 14-3-3 sigma protein, stratifin (Dellambra et al. (1995), J. Cell Sci. 108:3569-79). A specific regulation of the members of this protein family in the various hair follicle stages is therefore extremely likely. Finally, keratin 6A and acidic hair keratin are also repressed in catagenic hair follicles.


Any evaluation of whether or not the differential expression of various genes is significant is critically determined by the number of sequenced tags. Non-significant expression differences can become statistically significant through an increase in the number of sequenced tags.


The relevance of subsignificant expression differences can be evaluated using various data analysis methods through which expert biological knowledge flows into the evaluation of the expression differences. One method is the clustering of the identified genes according to their GO annotation. The GO annotation derives from the inputs in the data bank of the Gene Ontology (GO) Consortium, in which individual genes/proteins are classified according to their (primary) function. See world wide website geneontology.org/. By using these relationship features, expression differences which are statistically not outside the confidence interval can also assume a significance.


Table 7 contains a detailed list of the genes differentially expressed in anagenic hair follicles and in catagenic hair follicles, as determined by the process according to the invention, with an indication of

    • the running sequence identifier (SEQ ID NO:) in column 1,
    • the tag sequence used in column 2,
    • the relative expression frequency in anagenic hair follicles in column 3,
    • the relative expression frequency in catagenic hair follicles in column 4,
    • the ratio of the relative expression frequency determined in anagenic hair follicles and the relative expression frequency determined in catagenic hair follicles to one another in column 5,
    • the significance of the values shown in column 5 in column 6,
    • the GO number in column 7,
    • a brief description of the gene or gene product in column 8 and
    • the Swissprot Accession Number in column 9


The quotient in column 5 indicates the strength of the differential expression, i.e. the factor by which the particular gene is expressed more strongly in anagenic hair follicles than in catagenic hair follicles or vice versa.


The particular genes or gene products are accessible on the internet under their GO number at the following world wide web address geneontology.org.


For example genes of the DPP-IV cluster, a family of dipeptidyl peptidases (attractin [anagen 8 tags: catagen 23 tags], DPP-9 [0:9], DPP-4 [0:2], DPP-8 [0:1]), are clearly induced in catagenic hair follicles. The dipeptidyl peptidases of the DPP-IV family are proline-specific proteases which function to regulate various pathological and physiological processes (Aleski and Malik (2001), Biochim. Biophys. Act, 1550: 107-116). In addition, there is a weak, but consistent induction of various DNA repair helicases, for example RecQ-like 5 [3:8], RecQ-like 4 [1:2], RuvB-like [0:3], etc. This induction can be found in all annotated helicases of this set of data. In addition, the melanin biosynthesis cluster, which includes inter alia dopachrome tautomerase [0:7] and silver/pMEL [7:17], is also clearly induced.


By contrast, various subunits of type IV collagen (α1 [5:1], α2 [1:0], α6 [4:0]) are induced in anagenic hair follicles. Type IV collagen is a typical constituent of the follicle matrix and the expression of this protein can be expected to be increased in the growth phase of the follicle. The synaptosome cluster is also induced in anagenic hair follicles. This cluster includes the SNARE proteins VAMP-2 [5:0] and VAMP-3 [4:0] which have a general role in secretion. This observation is supported by the general induction of genes which play a role in exocytosis. This induction of exocytosis genes is likely associated with the process of pigmentation of the hair. Pigmentation involves the transfer of melanin-synthesizing organelles, so-called melanosomes, from melanocytes to keratinocytes of the hair follicle. Melanosomes bear a large microscopic similarity to the synaptosomes of the nerve cells, secretory vesicles which enable neurotransmitters to be released. The role of SNARE proteins for the synaptosomes is sufficiently documented; the role of these proteins in melanosomes is under discussion at the present time (Scott et al. (2002); J. Cell. Sci., 115: 1441-51). Finally, genes belonging to the group with N-acetyl lactosamine synthase activity (chain 1 [3:0], chain 2 [8:2], chain 3 [1:0]) are induced in anagenic hair follicles. Poly-N-acetyl lactosamine structures are found both in N- and in O-linked glycans of the glycoproteins from mammals. These glycans presumably interact with selectins and other glycan-binding proteins (Zhou (2003), Curr. Protein Pept. Sci., 4:1-9).


Another method of increasing the relevance of subsignificantly differentially expressed genes is clustering according to sequence patterns. Such clustering is possible by co-ordinating the SAGE data with the data from available domain and pattern data banks, for example PROSITE and Pfam at world wide web site sanger.ac.uk/Software/Pfam/index.shtml and espasy.ch/prosite/.


Table 8 contains a detailed list of the genes differentially expressed in anagenic hair follicles and in catagenic hair follicles, as determined by the process according to the invention, with an indication of

    • the running sequence identifier (SEQ ID NO:) in column 1,
    • the tag sequence used in column 2,
    • the relative expression frequency in anagenic hair follicles in column 3,
    • the relative expression frequency in catagenic hair follicles in column 4,
    • the ratio of the relative expression frequency determined in anagenic hair follicles and the relative expression frequency determined in catagenic hair follicles to one another in column 5,
    • the significance of the values shown in column 5 in column 6,
    • a brief description of the pattern or the gene or gene product in column 7 and
    • the Swissprot Accession Number in column 8.


The quotient in column 5 indicates the strength of the differential expression, i.e. the factor by which the particular gene is expressed more strongly in anagenic hair follicles than in catagenic hair follicles or vice versa.


Through this co-ordination, the significance of some already described genes is further increased. Thus, the GO cluster with dipeptidyl peptidase activity is extended by other members of the PF:PEPTIDASE_S9 family. In addition, proteins with a GRAM domain are clearly induced in the catagenic hair follicles. The function of the domain is not known at present (Doerks et al. (2000) Trends Biochem. Sci., 25: 483-485).


As already described for GO clusters, type IV collagen subunits (C4 domain) are repressed in catagenic hair follicles in this arrangement also. The induction of proteins with a Gla domain in the anagenic hair follicles is noteworthy. These proteins are matrix-Gla and osteocalcin proteins. The matrix-Gla protein was described as an BMP-2 antagonist in hair follicle development and in the cycle (Nakamura et al. (2003), FASEB J., 17: 497-9).


In addition, the significance of differential gene expression can be increased by lexical analysis. In this case, a search is made for corresponding keywords in the descriptive texts of the various genes, as found for example in the data bank annotations.


Table 9 contains a detailed list of the genes differentially expressed in anagenic hair follicles and in catagenic hair follicles, as determined by the process according to the invention, with an indication of

    • the running sequence identifier (SEQ ID NO:) in column 1,
    • the tag sequence used in column 2,
    • the relative expression frequency in anagenic hair follicles in column 3,
    • the relative expression frequency in catagenic hair follicles in column 4,
    • the ratio of the relative expression frequency determined in anagenic hair follicles and the relative expression frequency determined in catagenic hair follicles to one another in column 5,
    • the significance of the values shown in column 5 in column 6,
    • the target word in column 7,
    • a brief description of the gene or gene product in column 8 and
    • the Swissprot Accession Number in column 9.


      The quotient in column 5 indicates the strength of the differential expression, i.e. the factor by which the particular gene is expressed more strongly in anagenic hair follicles than in catagenic hair follicles or vice versa.


As a result of this analysis, catagenic hair follicles show a significant induction of the cluster with the keyword “autophagy” (Apg4 [2:7], Apg3 [0:2], Apg10 [0:2], Apg5 [0:1]. Autophagy is a process in which cells envelop macroscopic cell constituents, such as organelles for example, in autophagosomes and then digest them in the lysosome. Autophagy occurs primarily during cell supply deficiencies; excessive autophagy is regarded as a mechanism of non-apoptotic programmed cell death. In addition, clusters formed on the basis of the keywords “dsc2” and “desmocollin” are repressed in catagenic hair follicles. Localization in the hair follicle has been reported in particular for desmocollin-3 (Kurzen et al. (1998), Differentiation, 63: 295-304; Nuber et al. (1996), Eur. J. Cell Biol., 71: 1-13).


Previously, it had been demonstrated that ribosomal RNA expression was repressed in catagenic hair follicles. These data are confirmed by the analytic methods described herein.


Finally, the repression of selenoproteins in catagenic hair follicles is also striking.


In yet another aspect of the invention a process (2) for determining the hair cycle in human beings, more particularly in women, in vitro, is provided. An exemplary method entails


a) obtaining a mixture of proteins, mRNA molecules or fragments of either from hair-covered human skin or from human hair follicles,


b) analyzing the mixture of a) for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are differentially expressed in anagenic and catagenic human hair follicles as shown by (SAGE),


c) comparing the analysis results from b) with the expression patterns identified by serial analysis of gene expression (SAGE) and


d) assigning the mixture to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of either which demonstrate elevated expression levels in anagenic hair follicles when compared to those observed in catagenic hair follicles or to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which demonstrate elevated expression in catagenic hair follicles than in anagenic hair follicles.


Diseases or disorders of the hair cycle include, for example pili torti (corkscrew hair, twisted hair), monilethrix (spindle hair), woolly hair (kinked hair), hair shaft defects with breakages [Trichorrhexis nodosa, Trichorrhexis invaginata, Trichoschisis, trichoptilosis (split hair shafts)], hair shaft defects through metabolic disorders, pili recurvati, rolled hair, changes in hair color [heterochromy, albinism, poliosis (acquired patch-like absence of pigment in the hair), canitis (physiological graying)], hypertrichoses, hirsutism, alopecias (irreversible alopecia: for example, androgenetic alopecia in men and women); reversible alopecia: (for example symptomatic diffuse alopecias through infections, chem. noxas and medicaments, hormonal disorders, diseases, etc.) and alopecia greata.


The mixture obtained in step a) above may be obtained from whole skin samples, hair-covered skin equivalents, isolated hair follicles, hair follicle equivalents or cells of hair-covered skin.


It may be sufficient in step b) to analyze the mixture obtained for the presence of at least one of the proteins, mRNA molecules or fragments of either which are identified by serial analysis of gene expression (SAGE) as differentially expressed in anagenic and catagenic hair follicles where they are expressed solely in anagenic hair follicles or solely in catagenic hair follicles. In other cases, the quantity of the differentially expressed molecules must also be determined in step b), i.e. the expression must be quantitated.


In step d), the mixture analyzed in step b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which demonstrate elevated expression levels in anagenic hair follicles when compared to those observed in catagenic hair follicles, i.e. the mixture contains either more different compounds typically expressed in anagenic hair follicles than those which are typically expressed in catagenic hair follicles (qualitative differentiation) or more copies of compounds typically expressed in anagenic hair follicles than are typically present in catagenic hair follicles (quantitative differentiation). For assignment to hair in regression or unhealthy hair, the complementary procedure is followed.


A preferred embodiment of the method of the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Swissprot Accession Number in column 9 of Table 9 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed more strongly in anagenic hair follicles than in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed more strongly in catagenic hair follicles than in anagenic hair follicles.


Another preferred embodiment of the method of the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Swissprot Accession Number in column 8 of Table 8 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of either which are expressed more strongly in anagenic hair follicles than in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed more strongly in catagenic hair follicles than in anagenic hair follicles.


Another preferred embodiment of the process according to the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of proteins or mRNA molecules which are identified by their Swissprot Accession Number in column 9 of Table 7 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed more strongly in anagenic hair follicles than in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of either which are expressed more strongly in catagenic hair follicles than in anagenic hair follicles.


Another preferred embodiment of the process according to the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Unigene Accession Number in column 7 of Table 6, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of either which are expressed at least twice as strongly in anagenic hair follicles as in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least twice as strongly in catagenic hair follicles as in anagenic hair follicles.


Another preferred embodiment of the method according to the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Unigene Accession Number in column 7 of Table 5, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least five times as strongly in anagenic hair follicles as in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least five times as strongly in catagenic hair follicles as in anagenic hair follicles.


Another particularly preferred embodiment of the method according to the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Unigene Accession Number in column 7 of Table 4, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments thereof which are expressed at least 1.3 times as strongly in anagenic hair follicles as in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least 1.3 times as strongly in catagenic hair follicles as in anagenic hair follicles.


Another particularly preferred embodiment of the method according to the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Unigene Accession Number in column 7 of Table 3, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least twice as strongly in anagenic hair follicles as in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least twice as strongly in catagenic hair follicles as in anagenic hair follicles.


Another most particularly preferred embodiment of the method according to the invention for determining the hair cycle is characterized in that, in step b), the mixture obtained is analyzed for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments of either which are identified by their Unigene Accession Number in column 7 of Table 2, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 and, in step d), the mixture analyzed in b) is assigned to growing or healthy hair if it predominantly contains proteins, mRNA molecules or fragments of either which are expressed at least five times as strongly in anagenic hair follicles as in catagenic hair follicles or the mixture analyzed in b) is assigned to hair in regression or unhealthy hair if it predominantly contains proteins, mRNA molecules or fragments of proteins or mRNA molecules which are expressed at least five times as strongly in catagenic hair follicles as in anagenic hair follicles.


The hair cycle can also be described by quantitating several markers (expression products of the genes of importance to anagenic or catagenic hair follicles) which then have to be active in a characteristic ratio to one another in order to represent healthy or growing hair or in a different characteristic ratio to one another in order to represent hair in regression or unhealthy hair.


Accordingly, the present invention also relates to a method (3) for determining the hair cycle in human beings, more particularly in women, in vitro. An exemplary method entails

  • a) obtaining a mixture of proteins, mRNA molecules or fragments of either from hair-covered human skin or from human hair follicles, b) quantitating the expression levels of at least two of the proteins, mRNA molecules or fragments of either previously identified by SAGE as modulators of the hair cycle,
  • c) determining the expression ratios of the at least two proteins, mRNA molecules or fragments of either and forming an expression quotient,
  • d) comparing the expression ratios from c) with the expression ratios typically present in anagenic or in catagenic hair follicles for the molecules quantitated in b), more particularly with the expression ratios listed in column 5 of Tables 2 to 6 and
  • e) assigning the mixture obtained in a) to growing or healthy hair if the expression ratios of the follicles investigated or the hair-covered skin investigated correspond to the expression ratios in anagenic hair follicles or the mixture obtained in a) is assigned to hair in regression or unhealthy hair if the expression ratios of the follicles investigated or the hair-covered skin investigated correspond to the expression ratios in catagenic hair follicles.


The mixture obtained in step a) of the method according to the invention is preferably obtained from a skin sample, more particularly from a whole skin sample.


In another embodiment of the method according to the invention, the mixture obtained in step a) is obtained by microdialysis. The technique of microdialysis is described, for example, in “Microdialysis: A method for measurement of local tissue metabolism”, Nielsen, P. S., Winge, K., Petersen, L. M.; Ugeskr Laeger 1999, Mar. 22 161:12 1735-8; and in “Cutaneous microdialysis for human in vivo dermal absorption studies”, Anderson, C. et al.; Drugs Pharm. Sci., 1998, 91, 231-244; and also on the internet at world wide web address microdialysis.se/technique.htm, which is incorporated by reference herein.


In the technique of microdialysis, a probe is typically inserted into the skin and then slowly rinsed with a suitable carrier solution. After the acute reactions have abated following the insertion, the microdialysis yields proteins, mRNA molecules or fragments thereof which are present in the extracellular space and which can then be isolated in vitro, for example by fractionation of the carrier liquid, and analyzed. Microdialysis is less invasive than removing a whole skin sample, but has the disadvantage that it is limited to obtaining molecules occurring in the extracellular space.


Another preferred embodiment of the process according to the invention is characterized in that, in step b) of process (2), the analysis for the presence and optionally the quantity of at least one of the proteins or protein fragments or, in process (3), the quantitation of at least two proteins or protein fragments is carried out by a method selected from

    • one- or two-dimensional gel electrophoresis
    • affinity chromatography
    • protein-protein complexing in solution
    • mass spectrometry, more particularly matrix assisted laser desorption ionization (MALDI) and, more particularly,
    • use of protein chips or by a suitable combination of these methods.


Suitable analytical methods for use in the invention are described in the overview article by Akhilesh Pandey and Matthias Mann: “Proteomics to study genes and genomes”, Nature, Volume 405, Number 6788, 837-846 (2000), and the references cited therein, which is incorporated herein by reference.


2D gel electrophoresis is described, for example, in L. D. Adams, “Two-dimensional gel electrophoresis using the Isodalt System” or in L. D. Adams and S. R. Gallagher, Two-dimensional Gel Electrophoresis using the O'Farrell System”; both in Current Protocols in Molecular Biology (1997, Eds. F. M. Ausubel et al.), Unit 10.3.1-10.4.13; or in 2D Electrophoresis Manual; T. Berkelman, T. Senstedt; Amersham Pharmacia Biotech, 1998 (Order No. 80-6429-60).


The mass-spectrometric characterization of the proteins or protein fragments is carried out in methods known to those of skill in the art, for example as described in the following literature references:

  • Methods in Molecular Biology, 1999; Vol. 112; 2-D Proteome Analysis Protocols; Editor: A. J. Link; Humana Press; Totowa, N.J., more particularly Courchesne, P. L. and Patterson, S. D.; pp. 487-512.
  • Carr, S. A. and Annan, R. S.; 1997; in Current Protocols in Molecular Biology; Editor: Ausubel, F. M. et al.; John Wiley and Sons, Inc. 10.2.1-10.21.27.


Another preferred embodiment of the process according to the invention is characterized in that, in step b) of process (2), the analysis for the presence and optionally the quantity of at least one of the mRNA molecules or mRNA molecule fragments or, in process (3), the quantitation of at least two mRNA molecules or mRNA molecule fragments is carried out by a method selected from

    • Northern blots,
    • reverse transcriptase polymerase chain reaction (RT-PCR),
    • Rnase protection experiments,
    • dot blots,
    • cDNA sequencing,
    • clone hybridization,
    • differential display,
    • subtractive hybridization,
    • cDNA fragment fingerprinting,
    • total gene expression analysis (TOGA),
    • serial analysis of gene expression (SAGE)
    • massively parallel signature sequencing (MPSS®) and, more particularly use of nucleic acid chips or by suitable combinations of these methods.


These methods are suitable for use in the invention and are described in the overview articles by Akhilesh Pandey and Matthias Mann: “Proteomics to study genes and genomes”, Nature, Volume 405, Number 6788, 837-846 (2000), and “Genomics, gene expression and DNA arrays”, Nature, Volume 405, Number 6788, 827-836 (2000) and the references cited therein, which are incorporated by reference herein. The TOGA process is described in J. Gregor Sutcliffe et al. “TOGA: An automated parsing technology for analyzing expression of nearly all genes, Proceedings of the National Academy of Sciences of the United States of America (PNAS), Vol. 97, No. 5, pp. 1976-1981 (2000)”, which is also incorporated herein by reference. The MPSS® process is described in U.S. Pat. No. 6,013,445, which is also incorporated herein by reference.


According to the invention, however, other methods known to the skilled person for analyzing for the presence and optionally the quantity of at least one of the proteins, mRNA molecules or fragments thereof may also be used.


Another preferred embodiment of the process according to the invention is characterized in that step b) comprises analyzing for the presence and optionally the quantity of 1 to ca. 5,000, preferably 1 to ca, 1,000, more particularly ca. 10 to ca. 500, preferably ca. 10 to ca. 250, more preferably ca. 10 to ca. 100 and most preferably ca. 10 to ca. 50 of the proteins, mRNA molecules or fragments thereof which are defined by their Swissprot Accession Number in column 8 of Table 8, by their Swissprot Accession Number in column 9 of Tables 7 and 9 and by their UniGene Accession Number in column 7 of Tables 2 to 6, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9.


The present invention also relates to a test kit for determining the hair cycle in human beings in vitro comprising means for carrying out the process according to the invention for determining the hair cycle in human beings.


The present invention also relates to a biochip for determining the hair cycle in human beings in vitro comprising

    • a solid, i.e. rigid or flexible, carrier and
    • probes immobilized thereon which are capable of specifically binding to at least one of the proteins, mRNA molecules or fragments of proteins or mRNA molecules defined by their Swissprot Accession Number in column 8 of Table 8, by their Swissprot Accession Number in column 9 of Tables 7 and 9 and by their UniGene Accession Number in column 7 of Tables 2 to 6, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9.


A biochip is a miniaturized functional element with molecules, more particularly biomolecules, which can act as specific interaction partners immobilized on one surface. The structure of these functional elements often comprises rows and columns which are known as chip arrays. Since thousands of biological or biochemical functional elements can be accommodated on one chip, they generally have to be made by microtechnical methods.


Biological and biochemical functional elements include, in particular, DNA, RNA, PNA (in the case of nucleic acids and their chemical derivatives, single strands, triplex structures or combinations thereof, for example, may be present), saccharides, peptides, proteins (for example antibodies, antigens, receptors) and derivatives of combinatorial chemistry (for example organic molecules).


Biochips generally have a 2D base surface for coating with biologically or biochemically functional materials. The base surfaces may also be formed, for example, by walls of one or more capillaries or by channels.


The prior art is represented, for example, by the following publications: Nature Genetics, Vol. 21, Supplement (whole), January 1999 (biochips); Nature Biotechnology, Vol. 16, pp. 981-983, October 1998 (biochips); Trends in Biotechnology, Vol. 16, pp. 301-306, July 1998 (biochips) and the above-cited overview articles by Akhilesh Pandey and Matthias Mann: Proteomics to study genes and genomes”, Nature, Volume 405, Number 6788, 837-846 (2000), and “Genomics, gene expression and DNA arrays”, Nature, Volume 405, Number 6788, 827,836 (2000), and the literature cited therein, which are all incorporated herein by reference.


A clear account of processes for the practical application of DNA chip technology is presented in the books “DNA Microarrays: A Practical Approach” (Editor: Mark Schena, 1999, Oxford University Press) and “Microarray Biochip Technology” (Editor: Mark Schena, 2000, Eaton Publishing), to the whole of which reference is hereby made.


DNA chip technology which is based on the ability of nucleic acid to enter into complementary base pairing is particularly preferred for the purposes of the present invention. This technical principle, known as hybridization, has already been used for years in Southern blot and Northern blot analysis. By comparison with these conventional methods, in which only a few genes are analyzed, DNA chip technology enables a few hundred to several thousand genes to be analyzed simultaneously.


A DNA chip consists essentially of a carrier material (for example glass or plastic) on which single-stranded, gene-specific probes are immobilized in high densities in a particular place (spot). The technique of probe application and the chemistry of probe immobilization are regarded as problematic. At present, there are several ways of achieving probe immobilization. E. M. Southern (E. M. Southern et al. (1992), Nucleic Acid Research 20, 1679-1684 and E. M. Southern et al. (1997), Nucleic Acid Research 25, 1155-1161) describes the production of oligonucleotide arrangements by direct synthesis on a glass surface which had been treated with 3-glycidoxypropyl trimethoxysilane and then with a glycol. A similar process achieves the in situ synthesis of oligonucleotides by a photosensitive combinatorial chemistry which can be compared with photolithographic techniques (Pease, A. C. et al. (1994), Proc. Natl. Acad Sci USA 91, 5022-5026).


Besides these techniques based on the in situ synthesis of oligonucleotides, already existing DNA molecules can also be immobilized on surfaces of carrier material. P.O. Brown (DeRisi et al. (1997), Science 278, 680-686) describes the immobilization of DNA on glass surfaces coated with polylysine. An article by L. M. Smith (Guo, Z. et al. (1994), Nucleic Acid Research 22, 5456-5465) discloses a similar process: oligonucleotides bearing a 5′-terminal amino group can be immobilized on a glass surface which had been treated with 3-aminopropyl trimethoxysilane and then with 1,4-phenyl diisothiocyanate.


DNA probes can be applied to a carrier with a so-called pin spotter. To this end, thin metal needles, for example 250 μm in diameter, dip into probe solutions and then transfer the adhering sample material in defined volumes to the carrier material of the DNA chip.


However, the probes are preferably applied by a piezo-controlled nanodispenser which, similarly to an ink jet printer, applies probe solutions contactlessly to the surface of the carrier material in a volume of 100 picoliters.


The probes are immobilized, for example, as described in EP-A-0 965 647. DNA probes are generated by PCR using a sequence-specific primer pair, one primer being modified at the 5′-end and carrying a linker with a free amino group. This ensures that a defined strand of the PCR products can be immobilized on a glass surface which had been treated with 3-aminopropyl trimethoxysilane and then with 1,4-phenyl diisothiocyanate. The gene-specific PCR products should ideally have a defined nucleic acid sequence in a length of 200 to 400 bp and comprise non-redundant sequences. After the immobilization of the PCR products via the derivatized primer, the counter-strand of the PCR product is removed by incubation for 10 minutes at 96° C.


In one application typical of DNA chips, mRNA is isolated from two cell populations to be compared. The isolated mRNAs are converted into cDNA by reverse transcription using fluorescence-marked nucleotides for example. The samples to be compared are marked, for example, with red or green fluorescing nucleotides. The cDNAs are then hybridized with the gene probes immobilized on the DNA chip and the immobilized fluorescent signals are then quantitated.


A factor critical to the success of using DNA chip technology for analyzing the gene expression of the hair follicles is the composition of the gene-specific probes on the DNA chip. The relevant genes of the hair cycle as identified in SAGE™ analysis are particularly useful in this regard. Since extremely small quantities of mRNA occasionally have to be analyzed where a DNA chip is used for analyzing the relevant hair cycle genes, it may be necessary to enrich the mRNA before the analysis by means of so-called linear amplification (Zhao et al. (2002), BMC Genomics, 3:31). To this end, the mRNA of a sample is first transcribed into cDNA. The amplified RNA is obtained from this double-stranded cDNA by in vitro transcription.


The analysis chips mentioned in DE-A-100 28 257.1-52 and in DE-A-101 02 063.5-52 are most particularly preferred for the production of small biochips (containing up to ca. 500 probes). These analysis chips have an electrically addressable structure which enables the samples to be electrofocused. In this way, samples can advantageously be focused and immobilized irrespective of their viscosity at particular points of an array by means of electrodes. The focusing ability simultaneously provides for an increase in the local concentration of the samples and thus for higher specificity. During the analysis itself, the test material can be addressed at the individual positions of the array. Thus, each item of information analyzed can potentially be tracked with the highest possible sensitivity. Cross-contamination by adjacent spots is virtually impossible.


The biochip according to the invention comprises 1 to ca. 5,000, preferably 1 to ca. 1,000, more particularly ca. 10 to ca. 500, preferably ca. 10 to ca. 250, more preferably ca. 10 to ca. 100 and most preferably ca. 10 to ca. 50 different probes. The different probes can each be present on the chip in multiple copies.


The biochip according to the invention comprises nucleic acid probes, more particularly RNA or PNA probes and preferably DNA probes. The nucleic acid probes have a length of ca. 10 to ca. 1,000 nucleotides, preferably ca. 10 to ca. 800 nucleotides, more preferably ca. 100 to ca. 600 nucleotides and most preferably ca. 200 to ca. 400 nucleotides.


A particularly preferred biochip according to the invention is a DNA chip carrying probes selected from those listed in Tables 2 and 5 and in Table 3 (without mitochondrial and ribosomal tags) and the over-represented groups “DNA helicase activity”, “DPPIV activity” and “melanine biosynthesis from tyrosine” from Table 7.


In another preferred form, the biochip according to the invention comprises peptide or protein probes, more particularly antibodies.


The present invention also relates to the use of the proteins, mRNA molecules or fragments of proteins or mRNA molecules which are defined by their Swissprot Accession Number in column 8 of Table 8, by their Swissprot Accession Number in column 9 of Tables 7 and 9 and by their UniGene Accession Number in column 7 of Tables 2 to 6, by their Swissprot Accession Number in column 8 and by the brief description of the gene or gene product in column 9 as hair cycle markers in human beings.


The present invention also relates to a test method for demonstrating the effectiveness of cosmetic or pharmaceutical active principles for influencing the hair cycle, more particularly against diseases or impairment of the hair and its growth, in vitro, characterized in that


a) the hair status is determined by a process according to the invention for determining the hair cycle or by means of a test kit according to the invention for determining the hair cycle or by means of a biochip according to the invention,


b) an active principle against diseases or impairment of the hair and its growth is applied one or more times to the hair-covered skin,


c) the hair status is re-determined by a process according to the invention for determining the hair cycle or by means of a test kit according to the invention for determining the hair cycle or by means of a biochip according to the invention and


d) the effectiveness of the active principle is determined by comparison of the results from a) and c).


The test method according to the invention can be carried out with whole skin samples, hair-covered skin equivalents, isolated hair follicles, hair follicle equivalents or cells of hair-covered skin.


The present invention also relates to a test kit for demonstrating the effectiveness of cosmetic or pharmaceutical active principles against diseases or impairment of the hair and its growth, comprising means for carrying out the test method according to the invention.


The present invention also relates to the use of the proteins, mRNA molecules or fragments of proteins or mRNA molecules which are defined by their Swissprot Accession Number in column 8 of Table 8, by their Swissprot Accession Number in column 9 of Tables 7 and 9 and by their UniGene Accession Number in column 7 of Tables 2 to 6, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 for demonstrating the effectiveness of cosmetic or pharmaceutical active principles against diseases or impairment of the hair and its growth.


The present invention also relates to a screening process for identifying cosmetic or pharmaceutical active principles against diseases or impairment of the hair and its growth in vitro, characterized in that


a) the hair status is determined by a process according to the invention for determining the hair cycle or by means of a test kit according to the invention for determining the hair cycle or by means of a biochip according to the invention,


b) a potential active principle against diseases or impairment of the hair and its growth is applied one or more times to the hair-covered skin,


c) the hair status is re-determined by a process according to the invention for determining the hair cycle or by means of a test kit according to the invention for determining the hair cycle or by means of a biochip according to the invention and


d) effective active principles are determined by comparison of the results from a) and c).


The present invention also relates to the use of the proteins, mRNA molecules or fragments of proteins or mRNA molecules which are defined by their Swissprot Accession Number in column 8 of Table 8, by their Swissprot Accession Number in column 9 of Tables 7 and 9 and by their UniGene Accession Number in column 7 of Tables 2 to 6, by their Swissprot Accession Number in column 8 or by the brief description of the gene or gene product in column 9 for identifying cosmetic or pharmaceutical active principles against diseases or impartment of the hair and its growth.


The present invention also relates to a process for the production of a cosmetic or pharmaceutical preparation against diseases or impairment of the hair and its growth, characterized in that


effective active principles are determined by the screening process according to the invention or by its use for identifying cosmetic or pharmaceutical active principles against diseases or impairment of the hair and its growth and


active principles found to be effective are mixed with cosmetically and pharmacologically suitable and compatible carriers.


Tables:














TABLE 1








Anagen
Catagen
Quotient
Significance
UniGene
Swissprot
Tag ID





















7.98
5.01
1.59
0.37
Hs.2062
P11473
Vitamin D receptor


1.00
2.00
−2.00
0.60
Hs.87409
P07996
Thrombospondin 1


1.00
3.01
−3.01
0.43
Hs.26690
P34130
Neurotrophin 5








(neurotrophin 4)


























TABLE 2












Ana-
Kata-

Signi-

Swiss-





Tags
gen
gen
Quotient
ficance
UniGene
prot
Tag_ID

























1
GCGATGGCCGT
1.00
10.02
−10.02
3.02
Hs.12106
Q96EY8
methylmalonic aciduria











(cobalamin deficiency)










type B





2
AACTCTTGAAG
1.00
10.02
−10.02
2.21
Hs.58189
O15372
eukaryotic translation










initiation factor 3,










subunit 3 gamma,










40 kDa





3
TGTCTGCCTGA
1.00
9.02
−9.02
2.72
Hs.237617
Q8N2J7
dipeptidylpeptidase 9



GGGGAACCCC



GGGAACCCCG





4
CAACATTCCTG
1.00
7.01
−7.01
2.11
Hs.180015
P30046
D-dopachrome










tautomerase





5
TCAATATTCTT
1.00
7.01
−7.01
2.11
Hs.432458
Q92954
proteoglycan 4,










(megakaryocyte










stimulating factor,










articular superficial










zone protein,










camptodactyly,










arthropathy, coxa vara,










pericarditis syndrome)





6
GTGAGTTGGG
1.00
7.01
−7.01
2.11
Hs.77897
Q12874
splicing factor 3a,



CTGGCAGATTG






subunit 3, 60 kDa





7
TTCTAACTCCT
1.00
7.01
−7.01
2.11
Hs.331803
none
ESTs, Highly similar to



TACCAGTGTAC






A32800 chaperonin










GroEL precursor -










human





8
TGAATGAGCAC
1.00
7.01
−7.01
2.11
Hs.433517
none
Homo sapiens cDNA



TCTCTACAGAA






FLJ38383 fis, clone










FEBRA2003726.





9
TTGCTAGAGGG
2.99
17.04
−5.70
2.84
Hs.172791
Q9UBK9
ubiquitously-expressed










transcipt





10
GCATAGTTCTA
6.99
1.00
6.99
2.10
Hs.239727
Q02487
(Manual) DSC2



AGAGTCATACA






Desmocollin-2A/2B





11
CTCCCTCTGCC
8.98
1.00
8.98
2.70
Hs.25348
P19065
vesicle-associated



CCCCCAATTCT






membrane protein 2



AAAACTGGGGA






(synaptobrevin 2)





12
ACCGGCGCCCG
9.98
1.00
9.98
2.19
Hs.65424
P05452
tetranectin










(plasminogen binding










protein)


























TABLE 3












Ana-
Kata-

Signifi-

Swiss-





Tags
gen
gen
Quotient
cance
UniGene
prot
Tag_ID

























13
ATCAGTGGCTT
2.99
14.03
−4.69
2.13
Hs.89545
P28070
proteasome (prosome,




AAGGAATCGGG






macropain) subunit,










beta type, 4





14
ACTTTTTCAAA
10.98
41.09
−3.74
4.68
manual
none
Mitochondrial major tag,










pos: 7503





15
GGGTAGGGGGG
13.97
43.09
−3.08
4.03
Hs.75678
P53539
FBJ murine



CTGTACTTGTG






osteosarcoma viral



CAGCACGGATG






oncogene homolog B



AGATTCCAGCC



AAAAACATTCC





16
TACCCTAAAAC
7.98
23.05
−2.89
2.17
Hs.194019
O75882
attractin





17
ATTTGAGAAGC
23.95
51.11
−2.13
2.78
manual
none
Mitochondrial major tag,










pos: 7313





18
TGGAAGCAGAT
38.92
19.04
2.04
2.04
Hs.1584
P49747
cartilage oligomeric



CGGGGTGGCCG






matrix protein










(pseudoachondroplasia,










epiphyseal dysplasia 1,










multiple)





19
AAAGCACAAGT
40.91
19.04
2.15
2.33
Hs.367762
P02538
keratin 6A





20
GCCGGGGTGTT
59.88
25.05
2.39
3.85
Hs.14376
P02571
actin, gamma 1



CTAGCCTCACG



CTAGCCCTCAC





21
TAGGGCAATCT
28.94
12.03
2.41
2.08
Hs.380973
P55855
SMT3 suppressor of mif



TAACAGCTACG






two 3 homolog 2 (yeast)



CTCATTCAGCT



CCACTAATGGA





22
TCACCGGTCAG
36.92
15.03
2.46
2.64
Hs.290070
P06396
gelsolin (amyloidosis,










Finnish type)





23
GTAATCCTGCT
23.95
8.02
2.99
2.33
manual
none
rRNA major tag





24
GTTCCCTGGCC
24.95
8.02
3.11
2.52
Hs.177415
P35544
(Manual) FAU, ub-like










protein, expressed as










fusion protein with










ribosomal protein S30





25
GATGCCGGCAC
16.96
4.01
4.23
2.35
Hs.146559
O43827
angiopoietin-like factor





26
CCAGAGGCTGT
16.96
4.01
4.23
2.35
manual
none
rRNA intermediate tag





27
GGTCAGTCGGT
13.97
3.01
4.64
2.11
manual
none
rRNA major tag





28
GCAACAACACA
18.96
4.01
4.73
2.80
manual
none
rRNA intermediate tag


























TABLE 4












Ana-
Kata-
Quotient
Signifi-

Swiss-





Tags
gen
gen
½
cance
UniGene
prot
Tag_ID

























29
CCTCAGGATAC
36.92
68.14
−1.85
2.64
manual
none
Mitochondrial











intermediate tag,










pos: 14429





30
TTTCCTCTCAA
43.91
80.17
−1.83
2.96
Hs.184510
P31947
stratifin





31
TCAAGCCATCA
61.87
107.22
−1.73
3.33
Hs.326035
P18146
early growth



GGATATGTGGT






response 1



GATTTCGTTTT



CTCACCTCTAG



CAGTTCATTAT





32
TAGACCCCTTG
63.87
103.21
−1.62
2.64
Hs.169476
P04406
glyceraldehyde-



TACCATCAATA






3-phosphate



GCCTCCAAGGA






dehydrogenase





33
TTCATACACCT
88.82
136.28
−1.53
2.81
manual
none
Mitochondrial










major tag,










pos: 12067





34
TGATTTCACTT
101.7
153.32
−1.51
2.91
manual
none
Mitochondrial




9





major tag,










pos: 9302





35
CACTACTCACC
99.79
145.30
−1.46
2.44
manual
none
Mitochondrial










major tag,










pos: 14902





36
TAAGGAGCTGA
157.6
222.46
−1.41
3.06
Hs.299465
P02383
ribosomal




7





protein S26





37
TTGGCAGCCCA
218.5
282.59
−1.29
2.38
Hs.76064
P46776
ribosomal



GGGTCCTCTCC
5





protein L27a



GGGGGAGTTTC



GAGGGAGTTTC



GAGGGAATTTC



ATGAATTAAAA





38
TCAGATTTTTG
203.5
259.54
−1.27
2.03
Hs.446628
P12750
ribosomal



TCAGATCTTTG
8





protein S4, X-



GTTTGTTGCCC






linked



ATGCCCGCACC





39
GTCCGAGTGCA
81.83
47.10
1.74
2.66
Hs.351316
P30408
transmembrane



GGGACGAGTGA






4 superfamily



CACATATATAC






member 1



ATCCCTAGTAC





40
GCTGGAGTTGC
85.82
49.10
1.75
2.81
Hs.41696
Q15323
keratin, hair,










acidic, 1





41
TCGAAGCCCCC
48.90
26.05
1.88
2.08
manual
none
Mitochondrial










intermediate tag,










pos: 11417





42
TGAGAGGGTGT
56.88
29.06
1.96
2.58
Hs.74405
P27348
tyrosine 3-mono-



TGAAAGGGTGT






oxygenase/



GGCCATCTCTT






tryptophan 5-



GAAAAGTACTA






monooxygenase



CTCTTAATGTA






activation










protein, theta










polypeptide


























TABLE 5












Ana-
Kata-



Swiss-





Tags
gen
gen
Quotient
Sign.
UniGene
prot
Tag_ID

























43
TGGGCCCGTGT
1.00
8.02
−8.02
1.68
Hs.11607
Q8NDR0
hypothetical




ATAAAAAGCAG






protein FLJ32205





44
ACTCAGAAGAG
1.00
7.01
−7.01
1.41
Hs.198272
O95178
NADH










dehydrogenase










(ubiquinone) 1










beta subcomplex,










2,8 kDa





45
AGGGAGGGGCC
1.00
7.01
−7.01
1.41
Hs.386793
P22352
glutathione










peroxidase 3










(plasma)





46
CTTTTCTTCTG
1.00
7.01
−7.01
1.41
Hs.296014
P30876
polymerase (RNA)










II (DNA directed)










polypeptide B,










140 kDa





47
CCTGTAAAGCC
1.00
7.01
−7.01
1.41
Hs.9691
Q14344
guanine nucleotide



ACTCGTATTAG






binding protein (G










protein), alpha 13





48
AAGGCGTTTCC
1.00
7.01
−7.01
1.41
Hs.13255
Q9Y2E2
KIAA0930 protein





49
CCTGTGTGTGT
1.00
7.01
−7.01
1.41
Hs.5894
Q8NBF3
hypothetical










protein FLJ10305





50
CCCAGGAGCAG
1.00
7.01
−7.01
1.41
Hs.22051
Q8TBS2
hypothetical



CAGCAGGAGCA






protein MGC15548





51
ACCTGCCCCTC
1.00
6.01
−6.01
1.81
Hs.125262
Q9NRG9
achalasia,










adrenocortical










insufficiency,










alacrimia (Allgrove,










triple-A)





52
GTGGGGGGAGG
1.00
6.01
−6.01
1.81
Hs.438541
none
HLA class II region










expressed gene










KE2





53
TCTGTGACTTC
1.00
6.01
−6.01
1.81
Hs.236494
O88386
RAB10, member



AGTTTTATTTG






RAS oncogene










family





54
GCCTGGTGACC
1.00
6.01
−6.01
1.81
Hs.336916
Q9UER7
death-associated



AGAAGAATGGG






protein 6





55
TGCAAGAAGTA
1.00
6.01
−6.01
1.81
Hs.206501
O95332
hypothetical



CTTTAGCTACC






protein from clone



CTTACGTGATT






643





56
GTTATATGCCC
1.00
6.01
−6.01
1.81
Hs.13350
none
Homo sapiens



GGTTTTAGTTC






mRNA; cDNA










DKFZp586D0918










(from clone










DKFZp586D0918)





57
TTACAACATTG
1.00
6.01
−6.01
1.81
Hs.12314
none
Homo sapiens










mRNA; cDNA










DKFZp586C1019










(from clone










DKFZp586C1019)





58
TTTTAAACTTG
1.00
6.01
−6.01
1.81
Hs.226770
Q8TBV3
DKFZP566C0424



TCTCCATCACT






protein



GCTTGAACTCT





59
GCTGTATGTAC
1.00
6.01
−6.01
1.81
Hs.94761
Q8TEG6
KIAA1691 protein



GCAAGGTTGGT





60
TGGACAGGCAG
2.00
10.02
−5.01
1.66
Hs.183800
P46060
Ran GTPase



CTTTCCCCTTT






activating protein 1





61
ACATCATACTG
1.00
5.01
−5.01
1.51
Hs.61790
Q8NCG8
Importin 4





62
ATGCAAGAGAG
1.00
5.01
−5.01
1.51
Hs.78521
Q8WTS6
SET domain-










containing protein










7





63
CCAAGAAAGAA
1.00
5.01
−5.01
1.51
Hs.169900
Q13310
poly(A) binding










protein,










cytoplasmic 4










(inducible form)





64
GATTTGTGTTC
1.00
5.01
−5.01
1.51
Hs.173125
P30405
peptidylprolyl










isomerase F










(cyclophilin F)





65
GCGAGAATCCA
1.00
5.01
−5.01
1.51
Hs.240457
Q96C41
RAD9 homolog (S.











Pombe)






66
GGCCAGCAAGT
1.00
5.01
−5.01
1.51
Hs.271353
Q15830
mutY homolog (E.











coli)






67
GGTGACAGAGA
1.00
5.01
−5.01
1.51
Hs.267632
P82094
TATA element










modulatory factor 1





68
TGTAAAGATTT
1.00
5.01
−5.01
1.51
Hs.4859
Q8NI48
cyclin L ania-6a





69
TGTATACAAGG
1.00
5.01
−5.01
1.51
Hs.349650
P04049
v-raf-1 murine










leukemia viral










oncogene homolog










1





70
TTGCCTTTTTA
1.00
5.01
−5.01
1.51
Hs.4311
O95605
SUMO-1 activating










enzyme subunit 2





71
TTGTGGGATCT
1.00
5.01
−5.01
1.51
Hs.278540
P06705
protein










phosphatase 3










(formerly 2B),










regulatory subunit










B, 19 kDa, alpha










isoform (calci-










neurin B, type I)





72
AGCCCTGGAGT
1.00
5.01
−5.01
1.51
Hs.20047
Q8WYX7
zinc finger protein,



ACCGCCGGGCT






subfamily 2A










(FYVE domain










containing), 1





73
TTGCCGGTTAA
1.00
5.01
−5.01
1.51
Hs.405813
Q92530
proteasome



ACTGGAAGGAG






(prosome,










macropain)










inhibitor subunit 1










(P131)





74
CAGAGTTGTAT
1.00
5.01
−5.01
1.51
Hs.5672
Q8NHE5
golgi membrane



AAATGCGAACA






protein SB140





75
GCTCTGCCCTC
1.00
5.01
−5.01
1.51
Hs.68257
P35269
general



GCTCTGCCCCC






transcription factor










IIF, polypeptide 1,










74 kDa





76
TCTTTGTCTAA
1.00
5.01
−5.01
1.51
Hs.6838
P52199
ras homolog gene



GGATATATCCA






family, member E



ATAGTGCTTCG





77
AGCCTACAGGT
1.00
5.01
−5.01
1.51
Hs.278359
Q8N1P7
Homo sapiens










cDNA FLJ38020










fis, clone










CTONG2012843,










weakly similar to










Human non-lens










beta gamma-










crystalline like










protein (AIM1)










mRNA.





78
ATCCACCCGCC
1.00
5.01
−5.01
1.51
Hs.251337
none
ESTs, Weakly










similar to










hypothetical










protein FLJ20489





79
CCAGAACTCTT
1.00
5.01
−5.01
1.51
Hs.184183
Q9H5Z4
Homo sapiens










cDNA: FLJ22755










fis, clone










KAIA0769.





80
CCCTGAAGAGC
1.00
5.01
−5.01
1.51
Hs.34579
Q8WY60
hypothetical










protein FLJ10948





81
CGCCCGTCGTG
1.00
5.01
−5.01
1.51
Hs.134742
Q9NPT2
hypothetical










protein










DKFZp547D065





82
CTGGGATCATC
1.00
5.01
−5.01
1.51
Hs.336425
Q96GX2
Homo sapiens,










clone MGC: 17296










IMAGE: 3460701,










mRNA, complete










cds





83
GCCACAGCCAG
1.00
5.01
−5.01
1.51
Hs.198037
O60339
KIAA0599 protein





84
TGCCGTGCCTG
1.00
5.01
−5.01
1.51
Hs.347187
Q96FD1
Homo sapiens










cDNA: FLJ21092










fis, clone










CAS03646.





85
TGTCGGGAAAT
1.00
5.01
−5.01
1.51
Hs.301065
O75033
KIAA0445 gene










product





86
CCACAACCTGG
5.99
1.00
5.99
1.80
Hs.101742
Q96E34
ribosomal large










subunit










pseudouridine










synthase C like





87
GCCGCCGAGCC
5.99
1.00
5.99
1.80
Hs.115232
Q15428
splicing factor 3a,



CCCCCAATGTT






subunit 2, 66 kDa



CCCCCAATGCT





88
GCTTACCTTTC
5.99
1.00
5.99
1.80
Hs.7753
O43852
calumenin



CACTTGAAAAG





89
TGTTAGCCTGT
5.99
1.00
5.99
1.80
Hs.92384
O75915
vitamin A



TATAGGCCGAA






responsive;



GTCTAGAATCT






cytoskeleton



CTGCCATAGAT






related





90
CCTGTACCCCA
6.99
1.00
6.99
1.40
Hs.32317
Q8NBD5
high-mobility group










20B





91
CGGAGTCCATT
6.99
1.00
6.99
1.40
Hs.155595
Q15019
neural precursor










cell expressed,










developmentally










down-regulated 5





92
GAGCAGCGCCC
6.99
1.00
6.99
1.40
Hs.112408
P31151
S100 calcium










binding protein A7










(psoriasin 1)





93
GTAGCAGGGCT
6.99
1.00
6.99
1.40
Hs.302441
Q9H269
vacuolar protein










sorting 16 (yeast)





94
TGAGGGGTGAA
6.99
1.00
6.99
1.40
Hs.268530
Q13098
G protein pathway










suppressor 1





95
AAGTCATTCAG
6.99
1.00
6.99
1.40
Hs.274416
P56556
NADH



AGGCTGGACGA






dehydrogenase










(ubiquinone) 1










alpha subcomplex,










6, 14 kDa





96
GTGTGAGTGTG
6.99
1.00
6.99
1.40
Hs.7838
Q9UHC7
makorin, ring finger



ATGAGCTGGAA






protein, 1





97
CGCATTAAAGC
6.99
1.00
6.99
1.40
Hs.432368
Q8N9S5
Homo sapiens










cDNA FLJ30256










fis, clone










BRACE2002458.





98
CTCGGCCAGAG
6.99
1.00
6.99
1.40
Hs.311611
none
EST





99
CAAGCAGGACA
7.98
1.00
7.98
1.66
Hs.424551
Q9Y3Q3
integral type I










protein





100
TGATGTCTGGT
7.98
1.00
7.98
1.66
Hs.83883
Q969W9
transmembrane,










prostate androgen










induced RNA





101
TTCTTATTTTA
7.98
1.00
7.98
1.66
Hs.406423
Q13435
splicing factor 3b,



GTGGCTGAGCA






subunit 2, 145 kDa





102
CAGGAGAACTG
7.98
1.00
7.98
1.66
Hs.150614
Q8NAL3
hypothetical



AGTGAGGATAG






protein FLJ35155





103
CAGCTTGCAAA
8.98
1.00
8.98
1.92
Hs.105465
Q15356
small nuclear










ribonucleoprotein










polypeptide F





104
GTTTATGGATA
8.98
1.00
8.98
1.92
Hs.365706
P08493
matrix Gla protein







1.00
8.02
−8.02
1.68
Hs.284162
Q8N6S8
chromosome 15










open reading










frame 15







1.00
8.02
−8.02
1.68
Hs.71746
Q8NDH3
aminopeptidase-










like 1







1.00
7.01
−7.01
1.41
Hs.183037
P10644
protein kinase,










cAMP-dependent,










regulatory, type I,










alpha (tissue










specific










extinguisher 1)







1.00
5.01
−5.01
1.51
Hs.79530
Q9NPL8
chromosome 3










open reading










frame 1







1.00
7.01
−7.01
1.41
Hs.323463
Q8N4E8
hypothetical










protein MGC8902


























TABLE 6












Ana-
Kata-

Signifi-

Swiss-





Tags
gen
gen
Quotient
cance
UniGene
prot
Tag_ID

























105
GTTTGCAAGTG
2.00
9.02
−4.51
1.42
Hs.151787
Q15029
U5 snRNP-











specific0










protein, 116










kD





106
TTACTAAATGG
2.99
11.02
−3.69
1.46
Hs.155560
P27824
calnexin



TAACAGTTGTG



CGGGATGCAGA



CCTCACTTTTT



CCTCACTTTCT



ACATATACTGT



AAGCAAACTAA





107
TACAAAACCAT
3.99
12.03
−3.02
1.32
Hs.79110
Q8NB06
Nucleolin



GTTTTTGCTTC



GAAGACGGTGA



ATAAAACATTC





108
AGGCTTTATGG
6.99
20.04
−2.87
1.92
Hs.24385
none
Human










hbc647










mRNA










sequence.





109
TTCAGTGAAGG
6.99
18.04
−2.58
1.55
Hs.2795
P00338
lactate



TCTTGTGTATA






dehydro-



TCTTGTGCATA






genase A





110
CCTGTGCCTGG
6.99
17.04
−2.44
1.37
Hs.95972
P40967
silver



CCTGGTCAAGA






homolog










(mouse)





111
CGTTCCTGCGG
7.98
19.04
−2.39
1.46
Hs.75424
P41134
inhibitor of










DNA binding










1, dominant










negative










helix-loop-










helix protein





112
TGAGGGAATAA
14.97
32.07
−2.14
1.89
Hs.83848
P00938
triosephos-










phate










isomerase 1





113
TTGAATGAACA
9.98
21.04
−2.11
1.31
Hs.372673
O14979
heterogen-



TTAAACCTCAA






eous nuclear



GATACAAAAAC






ribonucleo-



CAACTTTAGGG






protein D-like



AAATGATACAA



AAAGTGGACCT





114
GTGCCCTGTTG
11.98
24.05
−2.01
1.34
Hs.278411
Q9Y2A7
NCK-










associated










protein 1





115
CACGCAATGCT
13.97
5.01
2.79
1.37
Hs.375592
Q08117
amino-










terminal










enhancer of










split





116
TATGCCCGAAT
19.96
7.01
2.85
1.89
Hs.41690
Q14574
desmocollin



CAGGAGTGTGC






3





117
TGACCCCACAG
11.98
4.01
2.99
1.30
Hs.356578
none
mitochondrial










ribosomal










protein L54





118
TTTGGGGCTGG
11.98
4.01
2.99
1.30
Hs.7476
Q99437
ATPase, H+










transporting,










lysosomal










21 kDa, V0










subunit c″





119
GCGGGAGGGCT
14.97
5.01
2.99
1.56
Hs.399736
P36404
ADP-










ribosylation










factor-like 2





120
TGTGGGTGCTG
14.97
5.01
2.99
1.56
Hs.194657
P12830
cadherin 1,










type 1 E-










cadherin










(epithelial)





121
CTGTGACACAG
12.97
4.01
3.23
1.50
Hs.432970
P78371
chaperonin










containing










TCP1,










subunit 2










(beta)





122
GGCTTTGGAGT
10.98
3.01
3.65
1.45
Hs.90918
Q9Y2Q7
chromosome










11 open










reading










frame 10





123
AGAATCGCTTG
8.98
2.00
4.49
1.41
manual
none
Alu-repeat





124
CCCTGGGTTCT
8.98
2.00
4.49
1.41
Hs.430150
P02792
ferritin, light










polypeptide





125
GTGAAACCTCG
8.98
2.00
4.49
1.41
Hs.274417
Q9Y676
mitochondrial










ribosomal










protein S18B





126
TTACGAGGAAG
8.98
2.00
4.49
1.41
Hs.300471
P55735
SEC13-like 1










(S. cere-











visiae)






127
CAGCGCCTGGC
4.99
1.00
4.99
1.50
Hs.110571
O75293
growth arrest



AACTCCCAGTT






and DNA-










damage-










inducible,










beta





128
AGGTGCAGAGG
4.99
1.00
4.99
1.50
Hs.13501
O00541
pescadillo










homolog 1,










containing










BRCT










domain










(zebrafish)





129
ATGTACTAAAG
4.99
1.00
4.99
1.50
Hs.250897
Q92734
TRK-fused










gene





130
GACGCAGAAGT
4.99
1.00
4.99
1.50
Hs.296426
O95782
adaptor-










related










protein










complex 2,










alpha 1










subunit





131
GAGCAGCTGGA
4.99
1.00
4.99
1.50
Hs.166887
Q99829
copine I





132
GGGATCGCCCC
4.99
1.00
4.99
1.50
Hs.284261
Q9U106
NSFL1 (p97)










cofactor










(p47)





133
GTTTCTTCCCT
4.99
1.00
4.99
1.50
Hs.290874
Q8N672
selenoprotein










H





134
GCTAAGTATTT
4.99
1.00
4.99
1.50
Hs.380963
Q9UIV1
CCR4-NOT



GCCCATTTTAT






transciption



CTTGTATATAG






complex,



ATATTACAGTG






subunit 7





135
CAAAGGCTGTG
4.99
1.00
4.99
1.50
Hs.75412
P55145
arginine-rich,



AGGGGATTCCC






mutated in










early stage










tumors





136
TAAATGATCAG
2.00
9.02
−4.51
1.42
Hs.190452
O15071
KIAA0365



GTGTAACCCCG






gene product



GTGCGTGCTGC



GCCTGGGCTCC



CCAGGCCCTGG





137
TTGTCGATGGG
8.98
2.00
4.49
1.41
Hs.55505
Q9BVJ7
hypothetical










protein










FLJ20442





138
GTGGCGCACAC
4.99
1.00
4.99
1.50
Hs.375756
none
Homo










sapiens,










clone










IMAGE: 4153










384, mRNA





139
TCAGCCGCTAC
4.99
1.00
4.99
1.50
Hs.39132
Q96LW7
hypothetical










protein










MGC11115





140
ACCCGCCGGGC
25.95
11.02
2.35
1.84
manual
none
rRNA major










tag





141
TACTGCTCGGA
10.98
3.01
3.65
1.45
manual
none
Mitochondrial










antisense










tag, pos:-










13715







3.99
12.03
−3.02
1.32
Hs.278589
P78347
general










transcription










factor II, i







5.99
17.04
−2.84
1.66
Hs.406404
Q14103
heterogene-










ous nuclear










ribonucleo-










protein D










(AU-rich










element RNA










binding










protein 1,










37 kDa)







6.99
19.04
−2.72
1.73
Hs.356531
P07900
heat shock










90 kDa










protein 1,










alpha







10.98
23.05
−2.10
1.40
Hs.334842
P05209
tubulin,










alpha,










ubiquitous







8.98
20.04
−2.23
1.38
Hs.301885
none
Homo










sapiens










cDNA










FLJ11346 fis,










clone










PLACE1010










900.







4.99
1.00
4.99
1.50
Hs.375756
none
Homo










sapiens,










clone










IMAGE: 4153










384, mRNA







8.98
20.04
−2.23
1.38
Hs.153
P18124
ribosomal










protein L7


























TABLE 7












Ana-
Kata-


GO-






Tags
gen
gen
Quot.
Signf.
Number
Description
Swissprot



























5
20
4
2.62
GO0003678
DNA helicase
11 matches










activity





142
ACTATAGAGAC
0
2
4
0.6
GO0003678
DEAD/H (Asp-Glu-
[Swissprot:tr|Q924









Ala-Asp/His) box
98;tr|Q92770;tr|Q9









polypeptide 11
2998;tr|Q92999;tr|









(CHL1-like
Q93000;tr|Q96FC9;]









helicase homolog,










S. cerevisiae)






143
CCCTGGTGGGC
0
2
4
0.6
GO0003678
RecQ protein-like 4
[Swissprot:sp|O94










761;tr|Q96DW2;tr|










Q96F55;]





144
CCGCACCTCCA
1
0
−2
0.3
GO0003678
RecQ protein-like 4
[Swissprot:sp|O94










761;tr|Q96DW2;tr|










Q96F55;]





145
CAGGCGTGCAC
3
6
2
0.47
GO0003678
RecQ protein-like 5
[Swissprot:sp|O94










762;tr|Q8WYH5;tr|










Q9BSD6;tr|Q9BW8










0;tr|Q9H0B1;]





146
TCAGTATTCTA
0
1
2
0.3
GO0003678
RecQ protein-like 5
[Swissprot:sp|O94










762;tr|Q8WYH5;tr|










Q9BSD6;tr|Q9BW8










0;tr|Q9H0B1;]





147
TCGAGGACAGA
0
1
2
0.3
GO0003678
RecQ protein-like 5
[Swissprot:sp|O94










762;tr|Q8WYH5;tr|










Q9BSD6;tr|Q9BW8










0;tr|Q9H0B1;]





148
AAGTGAGATGG
0
3
6
0.91
GO0003678
RuvB-like 1 (E.
[Swissprot:sp|Q9Y










coli)

265;]





149
GAATTGAAATA
0
1
2
0.3
GO0003678
SWI/SNF related,
[Swissprot:tr|Q96A









matrix associated,
Y1;tr|Q9NXQ5;tr|Q









actin dependent
9NZC9;tr|Q9UFH3;









regulator of
tr|Q9UI93;]









chromatin,









subfamily a-like 1





150
GCAGAACCATT
0
1
2
0.3
GO0003678
alpha
[Swissprot:sp|P461









thalassemia/mental
00;]









retardation









syndrome X-linked









(RAD54 homolog,










S. cerevisiae)






151
TACACCCGCTC
1
2
2
0.21
GO0003678
excision repair
[Swissprot:sp|P194









cross-
47;]









complementing









rodent repair









deficiency,









complementation









group 3









(xeroderma









pigmentosum









group B









complementing)





152
TGGCCAGATGC
0
1
2
0.3
GO0003678
immunoglobulin
[Swissprot:sp|P389









mu binding protein
35;]









2







12
2
−6
2.12
GO0003831
beta-N-acetyl-
4 matches









glucosaminyl









glycopeptide









beta-1,4-galacto-









syltransferase









activity





153
ATCCGCCACTC
1
0
−2
0.3
GO0003831
UDP-
[Swissprot:sp|P152









Gal:betaGlcNAc
91;]









beta 1,4-galacto-









syltransferase,









polypeptide 1





154
TCCCAGAGACC
2
0
−4
0.6
GO0003831
UDP-
[Swissprot:sp|P152









Gal:betaGlcNAc
91;]









beta 1,4-









galactosyltransfer-









ase, polypeptide 1





155
GGAGGCAGGTG
8
2
−4
1.18
GO0003831
UDP-
[Swissprot:sp|O60









Gal:betaGlcNAc
909;tr|Q9BUP6;]









beta 1,4-









galactosyltransfer-









ase, polypeptide 2





156
GAGAGAAGAGT
1
0
−2
0.3
GO0003831
UDP-
[Swissprot:sp|O60









Gal:betaGlcNAc
512;tr|Q9BPZ4;tr|Q









beta 1,4-
9H8T2;]









galactosyltransfer-









ase, polypeptide 3







76
47
−1.62
2.02
GO0003924
GTPase activity
42 matches





157
AGGAACACAAA
3
1
−3
0.42
GO0003924
(Manual) EIF2S3
[Swissprot:sp|P410









Eukaryotic
91;]









translation initiation









factor 2, subunit 3









gamma, 52 kDa





158
GGCCTACATCC
0
1
2
0.3
GO0003924
ADP-ribosylation
[Swissprot:sp|P328









factor 1
89;]





159
TGCTTGTCCCT
8
4
−2
0.57
GO0003924
ADP-ribosylation
[Swissprot:sp|P328









factor 1
89;]





160
TGGCAAACGTG
4
0
−8
1.2
GO0003924
ADP-ribosylation
[Swissprot:sp|P328









factor 1
89;]





161
AGGACTTTGCC
2
1
−2
0.2
GO0003924
ADP-ribosylation
[Swissprot:sp|P165









factor 3
87;]





162
CCCAGCAAGAG
1
0
−2
0.3
GO0003924
ADP-ribosylation
[Swissprot:sp|P165









factor 3
87;]





163
CTGTTACAGGT
0
1
2
0.3
GO0003924
ADP-ribosylation
[Swissprot:sp|P364









factor domain
06;]









protein 1, 64 kDa





164
TTAATAAAATA
1
0
−2
0.3
GO0003924
G1 to S phase
[Swissprot:sp|P151









transition 1
70;tr|Q96GF2;]





165
TTACAAAGGCA
0
1
2
0.3
GO0003924
G1 to S phase
[Swissprot:sp|P151









transition 1
70;tr|Q96GF2;]





166
TTTGAGACCTG
1
0
−2
0.3
GO0003924
G1 to S phase
[Swissprot:sp|P151









transition 1
70;tr|Q96GF2;]





167
GTAATGTCCAT
0
1
2
0.3
GO0003924
KIAA0820 protein
[Swissprot:sp|Q9U










Q16;]





168
GCCAACGGCGT
1
0
−2
0.3
GO0003924
MLL septin-like
[Swissprot:tr|Q96Q









fusion
F3;tr|Q96QF4;tr|Q9










6QF5;tr|Q9HA04;tr|










Q9HC74;tr|Q9UG4










0;tr|Q9UHD8;tr|Q9










Y5W4;]





169
TGGCCTGCCCA
7
3
−2.33
0.64
GO0003924
MLL septin-like
[Swissprot:tr|Q96Q









fusion
F3;tr|Q96QF4;tr|Q9










6QF5;tr|Q9HA04;tr|










Q9HC74;tr|Q9UG4










0;tr|Q9UHD8;tr|Q9










Y5W4;]





170
GACACGAACAA
1
1
1
0
GO0003924
RAS,
[Swissprot:tr|Q9HC









dexamethasone-
43;tr|Q9Y272;]









induced 1





171
CTCGGTGATGT
7
3
−2.33
0.64
GO0003924
Ras homolog
[Swissprot:sp|Q15









enriched in brain 2
382;]





172
ATATCTTTGCT
1
0
−2
0.3
GO0003924
Ras-like without
[Swissprot:tr|O152









CAAX 2
95;tr|Q8TD69;tr|Q8










WVF6;tr|Q92964;tr|










Q99578;]





173
CTGAAGCTAAG
0
1
2
0.3
GO0003924
SAM domain and
[Swissprot:sp|Q9Y









HD domain 1
3Z3;tr|Q8N491;]





174
GCGAAACCCAG
1
0
−2
0.3
GO0003924
SAM domain and
[Swisprot:sp|Q9Y3









HD domain 1
Z3;tr|Q8N491;]





175
GTTTGCAAGTG
2
9
4.5
1.42
GO0003924
U5 snRNP-specific
[Swisprot:sp|Q150









protein, 116 kD
29;tr|Q8IXJ3;]





176
GGGGTGCTGTG
2
1
−2
0.2
GO0003924
dynamin 1
[Swisprot:sp|Q051










93;]





177
TGGAGACTGGC
0
2
4
0.6
GO0003924
dynamin 1-like
[Swissprot:tr|O004










29;tr|O14541;tr|O6










0709;tr|Q8TBT7;tr|










Q9Y5J2;]





178
CCTCCCTGATG
2
4
2
0.35
GO0003924
dynamin 2
[Swissprot:sp|P505










70;tr|Q8N1K8;]





179
ATGTATAATTT
1
0
−2
0.3
GO0003924
eukaryotic
[Swissprot:sp|P410









translation initiation
91;]









factor 2, subunit 3









gamma, 52 kDa





180
TTGGCTAGGCC
0
1
2
0.3
GO0003924
eukaryotic
[Swissprot:sp|P410









translation initiation
91;]









factor 2, subunit 3









gamma, 52 kDa





181
CTTGACACACA
1
0
−2
0.3
GO0003924
eukaryotic
[Swissprot:sp|P550









translation initiation
10;]









factor 5





182
TTCAGGGCTTC
1
2
2
0.21
GO0003924
eukaryotic
[Swissprot:sp|P550









translation initiation
10;]









factor 5





183
GGCAGGAGTAG
2
1
−2
0.2
GO0003924
guanylate binding
[Swissprot:sp|P324









protein 1,
55;]









interferon-









inducible, 67 kDa





184
AATGAGCAACT
0
1
2
0.3
GO0003924
guanylate binding
[Swissprot:sp|P324









protein 2,
56;tr|Q8TCE5;]









interferon-inducible





185
GCTTAATGTGT
1
0
−2
0.3
GO0003924
mitochondrial GTP
[Swissprot:tr|Q8TC









binding protein
Y6;tr|Q8WUW9;tr|










Q969G4;tr|Q969Y2;










tr|Q96H44;]





186
GCAGCTATGTG
2
0
−4
0.6
GO0003924
mitofusin 1
[Swissprot:tr|O153










23;tr|O60639;tr|Q8I










WA4;tr|Q9BZB5;tr|










Q9NWQ2;]





187
AGTGCCGTGTG
1
1
1
0
GO0003924
myxovirus
[Swissprot:sp|P205









(influenza virus)
91;tr|Q8NAA8;tr|Q









resistance 1,
96CI3;]









interferon-inducible









protein p78









(mouse)





188
CGGAGTCCATT
7
1
−7
1.4
GO0003924
neural precursor
[Swissprot:sp|Q15









cell expressed,
019;tr|Q8IUK9;tr|Q









developmentally
96CB0;]









down-regulated 5





189
CAAGCCTTACT
1
0
−2
0.3
GO0003924
nucleolar GTPase
[Swissprot:sp|Q13










823;]





190
TGGCCCGACGA
3
0
−6
0.9
GO0003924
nudix (nucleoside
[Swissprot:sp|P366









diphosphate linked
39;tr|Q8IV95;]









moiety X)-type









motif 1





191
ATCCCTTCCCG
1
0
−2
0.3
GO0003924
peanut-like 1
[Swissprot:sp|Q99









(Drosophila)
719;tr|O95648;tr|Q










96MY5;]





192
GGGCACAATGC
1
0
−2
0.3
GO0003924
peanut-like 1
[Swissprot:sp|Q99









(Drosophila)
719;tr|O95648;tr|Q










96MY5;]





193
GCTAAGGAGAT
6
3
−2
0.46
GO0003924
ras-related C3
[Swissprot:sp|P151









botulinum toxin
54;]









substrate 1 (rho









family, small GTP









binding protein









Rac1)





194
TATGACTTAAT
1
2
2
0.21
GO0003924
ras-related C3
[Swissprot:sp|P151









botulinum toxin
54;]









substrate 1 (rho









family, small GTP









binding protein









Rac1)





195
GTTTAATAGAA
0
1
2
0.3
GO0003924
spastic paraplegia
[Swissprot:tr|O958









3A (autosomal
90;tr|Q8WXF7;tr|Q









dominant)
96FK0;]





196
TGATATTCCAA
1
0
−2
0.3
GO0003924
spastic paraplegia
[Swissprot:tr|O958









3A (autosomal
90;tr|Q8WXF7;tr|Q









dominant)
96FK0;]





197
AACTGTACTAC
1
0
−2
0.3
GO0003924
v-Ki-ras2 Kirsten
[Swissprot:sp|P011









rat sarcoma 2 viral
18;tr|Q14014;tr|Q1









oncogene homolog
4015;tr|Q15285;tr|










Q8N2Z2;tr|Q96D1










0;tr|Q96FS0;]





198
GTCACTCTCCC
1
0
−2
0.3
GO0003924
v-Ki-ras2 Kirsten
[Swissprot:sp|P011









rat sarcoma 2 viral
18;tr|Q14014;tr|Q1









oncogene homolog
4015;tr|Q15285;tr|










Q8N2Z2;tr|Q96D1










0;tr|Q96FS0;]







12
2
−6
2.12
GO0003945
N-acetyllactos-
4 matches









amine synthase









activity





199
ATCCGCCACTC
1
0
−2
0.3
GO0003945
UDP-
[Swissprot:sp|P152









Gal:betaGlcNAc
91;]









beta 1,4-









galactosyltransfer-









ase, polypeptide 1





200
TCCCAGAGACC
2
0
−4
0.6
GO0003945
UDP-
[Swissprot:sp|P152









Gal:betaGlcNAc
91;]









beta 1,4-









galactosyltransfer-









ase, polypeptide 1





201
GGAGGCAGGTG
8
2
−4
1.18
GO0003945
UDP-
[Swissprot:sp|O60









Gal:betaGlcNAc
909;tr|Q9BUP6;]









beta 1,4-









galactosyltransfer-









ase, polypeptide 2





202
GAGAGAAGAGT
1
0
−2
0.3
GO0003945
UDP-
[Swissprot:sp|O60









Gal:betaGlcNAc
512;tr|Q9BPZ4;tr|Q









beta 1,4-
9H8T2;]









galactosyltransfer-









ase, polypeptide 3







0
12
24
3.62
GO0004274
dipeptidyl-
6 matches









peptidase IV









activity





203
CCATTTAAAGC
0
1
2
0.3
GO0004274
dipeptidylpeptidase
[Swissprot:sp|P274









4 (CD26,
87;]









adenosine de-









aminase com-









plexing protein 2)





204
GCTGGGAACCC
0
1
2
0.3
GO0004274
dipeptidylpeptidase
[Swissprot:sp|P274









4 (CD26,
87;]









adenosine de-









aminase com-









plexing protein 2)





205
CTCAAAATCAA
0
1
2
0.3
GO0004274
dipeptidylpeptidase
[Swissprot:tr|Q8IW









8
G7;tr|Q8NEM5;tr|Q










96JX1;tr|Q9HBM2;










tr|Q9HBM3;tr|Q9H










BM4;tr|Q9HBM5;tr|










Q9NXF4;]





206
GGGAAACCCCG
0
7
14
2.11
GO0004274
dipeptidylpeptidase
[Swissprot:tr|Q8N2









9
J7;tr|Q8N3F5;tr|Q8










WXD8;tr|Q96NT8;t










r|Q9BVR3;]





207
GGGGAAACCCC
0
1
2
0.3
GO0004274
dipeptidylpeptidase
[Swissprot:tr|Q8N2









9
J7;tr|Q8N3F5;tr|Q8










WXD8;tr|Q96NT8;t










r|Q9BVR3;]





208
TGTCTGCCTGA
0
1
2
0.3
GO0004274
dipeptidylpeptidase
[Swissprot:tr|Q8N2









9
J7;tr|Q8N3F5;tr|Q8










WXD8;tr|Q96NT8;t










r|Q9BVR3;]







10
1
−10
2.19
GO0004540
ribonuclease
4 matches









activity





209
CGCCTGTAGTC
4
0
−8
1.2
GO0004540
hypothetical
[Swissprot:tr|Q8N1









protein MGC4562
N8;tr|Q8TF46;tr|Q8










WTU9;tr|Q96CM7;]





210
GACCTTAATGG
2
0
−4
0.6
GO0004540
mitotic control
[Swissprot:sp|Q9Y









protein dis3
2L1;]









homolog





211
GGACCTGCGCC
2
1
−2
0.2
GO0004540
ribonuclease 6
[Swissprot:sp|O00









precursor
584;tr|Q8TCU1;tr|










Q8T0U2;tr|Q9NV6










1;tr|Q9NX85;]





212
ATACAGCCACT
2
0
−4
0.6
GO0004540
ribonuclease H2,
[Swissprot:sp|O75









large subunit
792;]







10
1
−10
2.19
GO0005587
collagen type IV
3 matches





213
GACCGCAGGAG
51

−5
0.9
GO0005587
collagen, type IV,
[Swissprot:sp|P024









alpha 1
62;tr|Q8NF88;tr|Q9










NYC5;]





214
AAGAACCTGTG
1
0
−2
0.3
GO0005587
collagen, type IV,
[Swissprot:sp|P085









alpha 2
72;tr|Q14052;]





215
GTGTCAGTTTT
4
0
−8
1.2
GO0005587
collagen, type IV,
[Swissprot:sp|Q14









alpha 6
031;tr|Q9BS57;]







97
63
−1.54
2.11
GO0005859
muscle myosin
5 matches





216
TTCTCACCACC
4
2
−2
0.34
GO0005859
myosin light chain
[Swissprot:sp|P146









1 slow a
49;]





217
GGGCGGAGCTC
1
0
−2
0.3
GO0005859
myosin, light
[Swissprot:sp|P164









polypeptide 6,
75;sp[P24572;]









alkali, smooth









muscle and non-









muscle





218
GTGCTGAATGG
72
48
−1.5
1.52
GO0005859
myosin, light
[Swissprot:sp|P164









polypeptide 6,
75;sp[P24572;]









alkali, smooth









muscle and non-









muscle





219
GGAGTGTGCTC
10
3
−3.33
1.23
GO0005859
myosin, light
[Swissprot:sp|P248









polypeptide 9,
44;tr|Q9BUF9;]









regulatory





220
CCCTTAGCTTT
10
10
1
0
GO0005859
myosin, light
[Swissprot:sp|P191









polypeptide,
05;]









regulatory, non-









sarcomeric (20 kD)







19
41
2.16
2.37
GO0006094
gluconeogenesis
6 matches





221
ACTATTTCCAC
1
1
1
0
GO0006094
fructose-1,6-
[Swissprot:sp|P094









bisphosphatase 1
67;tr|Q96E46;]





222
ATCCGCCTGCT
1
0
−2
0.3
GO0006094
glucose phosphate
[Swissprot:sp|P067









isomerase
44;tr|Q9BRD3;]





223
TAGAAAAATAA
1
1
1
0
GO0006094
glucose phosphate
[Swissprot:sp|P067









isomerase
44;tr|Q9BRD3;]





224
TTCATCTCTTG
0
2
4
0.6
GO0006094
pyruvate
[Swissprot:sp|P114









carboxylase
98;]





225
TCCTCGGGCAG
1
5
5
0.91
GO0006094
solute carrier
[Swissprot:sp|Q9U









family 25
BX3;]









(mitochondrial









carrier;









dicarboxylate









transporter),









member 10





226
TGAGGGAATAA
15
32
2.13
1.89
GO0006094
triosephosphate
[Swissprot:sp|P009









isomerase 1
38;tr|Q8WWD0;tr|










Q96AG5;]







44
82
1.86
3.2
GO0006469
negative
2 matches









regulation of









protein kinase









activity





227
GAGCTCCACAG
0
2
4
0.6
GO0006469
protein kinase
[Swissprot:sp|Q9Y









(cAMP-dependent,
2B9;]









catalytic) inhibitor









gamma





228
TTTCCTCTCAA
44
80
1.82
2.96
GO0006469
stratifin
[Swissprot:sp|P319










47;tr|Q96DH0;]







12
30
2.5
2.29
GO0006583
melanin
8 matches









biosynthesis from









tyrosine





229
CAACATTCCTG
0
7
14
2.11
GO0006583
D-dopachrome
[Swissprot:sp|P300









tautomerase
46;]





230
GTGCAGCTGGC
2
0
−4
0.6
GO0006583
melanoma antigen
[Swissprot:sp|Q9U









AIM1
MX9;]





231
CCTGGTCAAGA
7
17
2.43
1.37
GO0006583
silver homolog
[Swissprot:sp|P409









(mouse
67;]





232
GAGAAAGAGGA
0
1
2
0.3
GO0006583
tyrosinase
[Swissprot:sp|P146









(oculocutaneous
79;tr|Q9UMA2;]









albinism IA)





233
TTGGCTGGGCT
1
0
−2
0.3
GO0006583
tyrosinase
[Swissprot:sp|P146









(oculocutaneous
79;tr|Q9UMA2;]









albinism IA)





234
AAATATATTTT
1
0
−2
0.3
GO0006583
tyrosinase-related
[Swissprot:sp|P176









protein 1
43;]





235
CACTATAAAAA
0
2
4
0.6
GO0006583
tyrosinase-related
[Swissprot:sp|P176









protein 1
43;]





236
TTTTATACTGC
1
3
3
0.43
GO0006583
tyrosinase-related
[Swissprot:sp|P176









protein 1
43;]







84
49
−1.71
2.59
GO0006887
exocytosis
22 matches





237
CTTTGATCAGG
2
5
2.5
0.54
GO0006887
ADP-ribosylation
[Swissprot:sp|Q9Y









factor guanine
6D5;]









nucleotide-









exchange factor 2









(brefeldin A-









inhibited)





238
ACCACAGGGGC
1
0
−2
0.3
GO0006887
RAB3D, member
[Swissprot:sp|O95









RAS oncogene
716;]









family





239
ACCACAGGGGT
2
0
−4
0.6
GO0006887
RAB3D, member
[Swissprot:sp|O95









RAS oncogene
716;]









family





240
TTTGAGTTCTG
2
0
−4
0.6
GO0006887
SEC10-like 1 (S.
[Swissprot:sp|O00










cerevisiae)

471;tr|Q8IW24;]





241
TCTGATATGGT
0
1
2
0.3
GO0006887
SEC15 (S.
[Swissprot:sp|Q8T










cerevisiae)-like

AG9;tr|Q9NTA6;tr|










Q9NUN4;]





242
CGGCCCATCTG
1
1
1
0
GO0006887
Sec15B protein
[Swissprot:sp|Q9Y










2D4;tr|Q9H8D6;]





243
TTTATTCCTCT
0
1
2
0.3
GO0006887
Sec15B protein
[Swissprot:sp|Q9Y










2D4;tr|Q9H8D6;]





244
TGATGATCATT
1
1
1
0
GO0006887
Sec3-like
[Swissprot:sp|Q9N










V70;]





245
GTTTGCGGAGG
4
3
−1.33
0.14
GO0006887
brefeldin A-
[Swissprot:sp|Q9Y









inhibited guanine
6D6;]









nucleotide-









exchange protein 1





246
GGCTTTGATTT
2
3
1.5
0.17
GO0006887
coatomer protein
[Swissprot:sp|P356









complex, subunit
06;]









beta 2 (beta prime)





247
AATGTTTGTGA
1
0
−2
0.3
GO0006887
homolog of yeast
[Swissprot:sp|Q96









Sec5
KP1;]





248
ATCGATCGCCT
3
2
−1.5
0.16
GO0006887
likely ortholog of
[Swissprot:sp|Q9U









mouse exocyst
PT5;tr|Q8WV91;tr|









component protein
Q96BU6;tr|Q9H9X









70 kDa homolog
3;tr|Q9HA32;]









(S. cerevisiae)









Exo70: exocyst









component protein









70 kDa homolog









(S. cerevisiae)





249
GGGCCTGGCCT
2
1
−2
0.2
GO0006887
likely ortholog of
[Swissprot:sp|Q9U









mouse exocyst
PT5;tr|Q8WV91;tr|









component protein
Q96BU6;tr|Q9H9X









70 kDa homolog
3;tr|Q9HA32;]









(S. cerevisiae)









Exo70: exocyst









component protein









70 kDa homolog









(S. cerevisiae)





250
GCGAAGCCCTG
0
1
2
0.3
GO0006887
secretory protein
[Swissprot:sp|Q96









SEC8
A65;tr|Q8TAR2;]





251
GAGACCCTGGA
2
2
1
0
GO0006887
similar to S.
[Swissprot:sp|O60










cerevisiae Sec6p

645;]









and R. norvegicus









rsec6





252
CAGCAGGGGAT
0
1
2
0.3
GO0006887
syntaxin 1A (brain)
[Swissprot:sp|Q16










623;]





253
CTCTTAATGTA
1
0
−2
0.3
GO0006887
tyrosine 3-
[Swissprot:sp|P273









monooxygenase/
48;tr|Q9UP48;]









tryptophan 5-









monooxygenase









activation protein,









theta polypeptide





254
GGCCATCTCTT
30
17
−1.76
1.21
GO0006887
tyrosine 3-mono-
[Swissprot:sp|P273









oxygenase/trypto-
48;tr|Q9UP48;]









phan 5-mono-









oxygenase









activation protein,









theta polypeptide





255
TGAAAGGGTGT
1
0
−2
0.3
GO0006887
tyrosine 3-mono-
[Swissprot:sp|P273









oxygenase/trypto-
48,tr|Q9UP48,]









phan 5-mono-









oxygenase









activation protein,









theta polypeptide





256
TGAGAGGGTGT
25
10
−2.5
1.93
GO0006887
tyrosine 3-mono-
[Swissprot:sp|P273









oxygenase/trypto-
48;tr|Q9UP48;]









phan 5-mono-









oxygenase









activation protein,









theta polypeptide





257
AAGAACCAGCG
1
0
−2
0.3
GO0006887
vesicie-associated
[Swissprot:sp|Q15









membrane protein
836;tr|Q9BRV4;]









3 (cellubrevin)





258
TAACCCACTGG
3
0
−6
0.9
GO0006887
vesicle-associated
[Swissprot:sp|Q15









membrane protein
836;tr|Q9BRV4;]









3 (cellubrevin)







115
75
−1.53
2.39
GO0006979
response to
25 matches









oxidative stress





259
CCGGGTGATGG
23
19
−1.21
0.26
GO0006979
ATX1 antioxidant
[Swissprot:sp|O00









protein 1 homolog
244;]









(yeast)





260
CCCGGGAGCGA
7
3
−2.33
0.64
GO0006979
PDZ and LIM
[Swissprot:sp|O00









domain 1 (elfin)
151;]





261
GATGCCGGCAC
17
4
−4.25
2.35
GO0006979
angiopoietin-like
[Swissprot:tr|O438









factor
27;]





262
GCTTAATGTTT
1
1
1
0
GO0006979
catalase
[Swissprot:sp|P040










40;tr|Q8TAK2;tr|Q9










BWT9;]





263
CTTGACATACC
7
8
1.14
0.1
GO0006979
dual specificity
[Swissprot:sp|P285









phosphatase 1
62;]





264
GGTGTGAGCCA
2
0
−4
0.6
GO0006979
forkhead box M1
[Swissprot:sp|Q08










050;]





265
AACCCTGCCCC
1
0
−2
0.3
GO0006979
glutathione
[Swissprot:sp|P486









synthetase
37;]





266
GTGGGCCTTTG
4
1
−4
0.66
GO0006979
methionine sulf-
[Swissprot:sp|Q9U









oxide reductase A
J68;]





267
TGGCCCGACGA
3
0
−6
0.9
GO0006979
nudix (nucleoside
[Swissprot:sp|P366









diphosphate linked
39;tr|Q8IV95;]









moiety X)-type









motif 1





268
TGACAGTGACT
1
0
−2
0.3
GO0006979
oxidation
[Swissprot:tr|Q8N5









resistance 1
73;tr|Q8N8V0;tr|Q9










H266;tr|Q9NWC7;]





269
ACTGCCCCACT
0
1
2
0.3
GO0006979
oxidative-stress
[Swissprot:tr|O957









responsive 1
47;tr|Q9UPQ1;]





270
TTTTCTTCATT
0
2
4
0.6
GO0006979
oxidative-stress
[Swissprot:tr|O957









responsive 1
47;tr|Q9UPQ1;]





271
CCTCCACCTAG
21
14
−1.5
0.61
GO0006979
peroxiredoxin 2
[Swissprot:sp|P321










19;]





272
GTGGTACAGGA
6
2
−3
0.74
GO0006979
peroxiredoxin 5
[Swissprot:sp|P300










44;]





273
GTGGTGTGTAC
1
1
1
0
GO0006979
scavenger receptor
[Swissprot:tr|Q9U









class A, member 3
M15;tr|Q9UM16;]





274
TAACTCTCCTG
0
1
2
0.3
GO0006979
scavenger receptor
[Swissprot:tr|Q9U









class A, member 3
M15;tr|Q9UM16;]





275
AATAAAGCCTT
6
2
−3
0.74
GO0006979
selenoprotein P,
[Swissprot:sp|P499









plasma, 1
08;]





276
GAGAAATCTAC
0
1
2
0.3
GO0006979
selenoprotein P,
[Swissprot:sp|P499









plasma, 1
08;]





277
TCTTTGTTGTT
6
1
−6
1.15
GO0006979
selenoprotein P,
[Swissprot:sp|P499









plasma, 1
08;]





278
TGTGATAGTAA
1
2
2
0.21
GO0006979
selenoprotein P,
[Swissprot:sp|P499









plasma, 1
08;]





279
ATGGCCATAGA
3
8
2.67
0.84
GO0006979
serine/threonine
[Swissprot:sp|O00









kinase 25 (STE20
506;tr|Q96BA2;]









homolog, yeast)





280
AAAAAGCAGAT
3
2
−1.5
0.16
GO0006979
superoxide dis-
[Swissprot:sp|P004









mutase 1, soluble
41;]









(amyotrophic









lateral sclerosis 1









(adult))





281
ACATTTCCTGT
1
0
−2
0.3
GO0006979
superoxide dis-
[Swissprot:sp|P004









mutase 1, soluble
41;]









(amyotrophic









lateral sclerosis 1









(adult))





282
CAGGCCTTCAG
0
1
2
0.3
GO0006979
superoxide dis-
[Swissprot:sp|P004









mutase 1, soluble
41;]









(amyotrophic









lateral sclerosis 1









(adult))





283
GCTTGCAAAAA
1
1
1
0
GO0006979
superoxide dis-
[Swissprot:sp|P041









mutase 2,
79;tr|Q96AM7;tr|Q









mitochondrial
96EE6;tr|Q9UG59;]







25
47
1.88
2.04
GO0009306
protein secretion
23 matches





284
ATTAACAAAGC
3
8
2.67
0.84
GO0009306
GNAS complex
[Swissprot:sp|P048









locus
95;tr|O60726;tr|O7










5632;tr|O75633;tr|










O75684;tr|O95467;










tr|Q14455;tr|Q8TB










C0;tr|Q96H70;]





285
AAGCAAACTAA
0
1
2
0.3
GO0009306
calnexin
[Swissprot:sp|P278










24;]





286
CCTCACTTTCT
0
1
2
0.3
GO0009306
calnexin
[Swissprot:sp|P278










24;]





287
CCTCACTTTTT
0
1
2
0.3
GO0009306
calnexin
[Swissprot:sp|P278










24;]





288
CGGGATGCAGA
0
1
2
0.3
GO0009306
calnexin
[Swissprot:sp|P278










24;]





289
TAACAGTTGTG
0
4
8
1.21
GO0009306
calnexin
[Swissprot:sp|P278










24;]





290
TTACTAAATGG
2
3
1.5
0.17
GO0009306
calnexin
[Swissprot:sp|P278










24;]





291
GTGGAATAAAG
5
7
1.4
0.24
GO0009306
latent transforming
[Swissprot:tr|Q147









growth factor beta
67;]









binding protein 2





292
GCGAAACCCTG
5
5
1
0
GO0009306
polymeric
[Swissprot:sp|P018









immunoglobulin
33;tr|Q8IZY7;]









receptor





293
AAGTGAAACAC
1
1
1
0
GO0009306
protein disulfide
[Swissprot:sp|P136









isomerase related
67;]









protein (calcium-









binding protein,









intestinal-related)





294
ATCCAGGGTCC
2
1
−2
0.2
GO0009306
protein disulfide
[Swissprot:sp|P136









isomerase related
67;]









protein (calcium-









binding protein,









intestinal-related)





295
GACACTTGGGG
1
0
−2
0.3
GO0009306
protein transport
[Swissprot:sp|P383









protein SEC61
78;sp|Q9Y2R3;tr|Q









alpha subunit
8N0Z4;tr|Q8N3U3;tr|









isoform 1
Q8NC71;tr|Q9BU










16;]





296
GTTCTCCCACT
2
3
1.5
0.17
GO0009306
protein transport
[Swissprot:sp|P383









protein SEC61
78;sp|Q9Y2R3;tr|Q









alpha subunit
8N0Z4;tr|Q8N3U3;tr|









isoform 1
Q8NC71;tr|Q9BU










16;]





297
TTTATGTCTGG
0
1
2
0.3
GO0009306
protein transport
[Swissprot:sp|P383









protein SEC61
78;sp|Q9Y2R3;tr|Q









alpha subunit
8N0Z4;tr|Q8N3U3;tr|









isoform 1
Q8NC71;tr|Q9BU










16;]





298
CAGAAAAAAGC
0
1
2
0.3
GO0009306
syntaxin binding
[Swissprot:sp|Q64









protein 1
320;tr|Q96TG8;]





299
CTTCAGGACCT
1
1
1
0
GO0009306
syntaxin binding
[Swissprot:sp|Q64









protein 1
320;tr|Q96TG8;]





300
TCAGAGATGAG
0
1
2
0.3
GO0009306
syntaxin binding
[Swissprot:sp|Q15









protein 2
833;tr|O00184;tr|Q










9BU65;]





301
AACATTCTAAG
1
1
1
0
GO0009306
syntaxin binding
[Swissprot:sp|O00









protein 3
186;tr|Q9UPD7;]





302
GGAATACAGAA
0
1
2
0.3
GO0009306
vacuolar protein
[Swissprot:sp|Q96









sorting 33A (yeast)
AX1;tr|Q9H6C4;]





303
TCTGGACTTTT
1
0
−2
0.3
GO0009306
vacuolar protein
[Swissprot:sp|Q96









sorting 33A (yeast)
AX1;tr|Q9H6C4;]





304
CTGCTAAGATG
0
3
6
0.91
GO0009306
vacuolar protein
[Swissprot:sp|Q9H









sorting 33B (yeast)
267;]





305
TATGACCACAA
1
1
1
0
GO0009306
vacuolar protein
[Swissprot:sp|Q9N









sorting 45A (yeast)
RW7;]





306
AATACAGGATC
0
1
2
0.3
GO0009306
vesicle transport-
[Swissprot:tr|O607









related protein
54;tr|O94990;tr|Q8










WVM8;tr|Q9BZI3;tr|










Q9UNL3;tr|Q9Y6A










8;]







16
4
−4
2.13
GO0015036
disulfide
9 matches









oxidoreductase









activity





307
GCTGGAGCTAG
2
1
−2
0.2
GO0015036
dihydrolipoamide
[Swissprot:sp|P096









dehydrogenase
22;tr|Q8WTS4;]









(E3 component of









pyruvate









dehydrogenase









complex, 2-oxo-









glutarate complex,









branched chain









keto acid









dehydrogenase









complex)





308
GCATCTTCAAT
1
0
−2
0.3
GO0015036
dihydropyrimidine
[Swissprot:sp|Q12









dehydrogenase
882;tr|Q96HL6;tr|Q










96TH1;]





309
CTGCTGCACTC
5
1
−5
0.9
GO0015036
glutathione
[Swissprot:sp|P003









reductase
90;]





310
AGACGCACTCT
1
2
2
0.21
GO0015036
hypothetical
[Swissprot:tr|Q8IW









protein FLJ23322
F2;tr|Q8N378;tr|Q9










6BD1;tr|Q9H5L5;tr|










Q9H6M8;]





311
TTAGACATTAC
1
0
−2
0.3
GO0015036
hypothetical
[Swissprot:tr|Q8N1









protein FLJ30473
V3;tr|Q8N5E0;tr|Q










96NN9;]





312
CCGTTTAGCAG
1
0
−2
0.3
GO0015036
succinate
[Swissprot:sp|P310









dehydrogenase
40;tr|Q8IW48;]









complex, subunit









A, flavoprotein (Fp)





313
TCATAACTGTC
2
0
−4
0.6
GO0015036
succinate
[Swissprot:sp|P310









dehydrogenase
40;tr|Q8IW48;]









complex, subunit









A, flavoprotein (Fp)





314
GGTTCCCTGAG
1
0
−2
0.3
GO0015036
thioredoxin
[Swissprot:sp|Q16









reductase 1
881;tr|Q99475;tr|Q










9UES8;]





315
TCCGAGCCCCC
2
0
−4
0.6
GO0015036
thioredoxin
[Swissprot:tr|Q9NN









reductase 2
W7;]







24
53
2.21
3.07
GO0016272
prefoldin complex
6 matches





316
AATTAATTGTA
1
1
1
0
GO0016272
chromosome 19
[Swissprot:tr|Q8TC









open reading
23;tr|Q96C15;tr|Q9









frame 2
UNU3;]





317
AGGCTTTAGGG
0
1
2
0.3
GO0016272
chromosome 19
[Swissprot:tr|Q8TC









open reading
23;tr|Q96C15;tr|Q9









frame 2
UNU3;]





318
GGAGAAGATGA
2
6
3
0.75
GO0016272
prefoldin 2
[Swissprot:sp|Q9U










HV9;tr|O95334;]





319
GAAATGATGAG
18
25
1.39
0.55
GO0016272
prefoldin 5
[Swissprot:sp|Q99










471;tr|Q9C083;tr|Q










9C084;]





320
TTGCTAGAGGG
3
17
5.67
2.84
GO0016272
ubiquitously-
[Swissprot:sp|Q9U









expressed
BK9;tr|Q9Y6E5;]









transcript





321
AAATTAAAACA
0
3
6
0.91
GO0016272
von Hippel-Lindau
[Swissprot:sp|Q15









binding protein 1
765;]







27
10
−2.7
2.28
GO0016758
transferase,
9 matches









transferring









hexosyl groups









activity





322
GCCTGTTTGGG
4
0
−8
1.2
GO0016758
UDP glycosyl-
[Swissprot:sp|P192









transferase 1
24;tr|Q8WUQ4;]









family, polypeptide









A6





323
CTAAAATGCTT
1
0
−2
0.3
GO0016758
glycogenin
[Swissprot:sp|P469










76;tr|Q8N5Y3;]





324
GAAAAAGATGT
0
1
2
0.3
GO0016758
glycosyltransferase
[Swissprot:tr|Q8N2









AD-017
J6;tr|Q9P0I5;]





325
GGAAATATTCC
1
0
−2
0.3
GO0016758
gycosyltransferase
[Swissprot:tr|Q96K










A2;tr|Q9H1C3;]





326
AGTGAGGATAG
6
1
−6
1.15
GO0016758
hypothetical
[Swissprot:tr|Q8NA









protein FLJ35155
L3;tr|Q8NBI6;tr|Q8










WV03;tr|Q96ME0;]





327
CAGGAGAACTG
2
0
−4
0.6
GO0016758
hypothetical
[Swissprot:tr|Q8NA









protein FLJ35155
L3;tr|Q8NBI6;tr|Q8










WV03;tr|Q96ME0;]





328
GGGCTGCTGCC
10
5
−2
0.67
GO0016758
hypothetical
[Swissprot:tr|Q8N3









protein FLJ35207
Y3;tr|Q8N8Y6;tr|Q










8NAK3;tr|Q8WY62;]





329
GAGACTGTAGG
1
0
−2
0.3
GO0016758
hypothetical
[Swissprot:tr|Q8NB









protein
P2;]









LOC167127





330
TGAACCCGCCA
2
3
1.5
0.17
GO0016758
mannosyl (alpha-
[Swissprot:tr|Q96G









1,3-)-glycoprotein
H4;tr|Q9NSK6;tr|Q









beta-1,4-N-
9UQ53;]









acetylglucosaminyl









transferase,









isoenzyme B







9
0
−18
2.7
GO0019717
synaptosome
4 matches





331
AAAACTGGGGA
1
0
−2
0.3
GO0019717
vesicle-associated
[Swissprot:sp|P190









membrane protein
65;]









2 (synaptobrevin 2)





332
CCCCCAATTCT
4
0
−8
1.2
GO0019717
vesicle-associated
[Swissprot:sp|P190









membrane protein
65;]









2 (synaptobrevin 2)





333
AAGAACCAGCG
1
0
−2
0.3
GO0019717
vesicle-associated
[Swissprot:sp|Q15









membrane protein
836;tr|Q9BRV4;]









3 (cellubrevin)





334
TAACCCACTGG
3
0
−6
0.9
GO0019717
vesicle-associated
[Swissprot:sp|Q15









membrane protein
836;tr|Q9BRV4;]









3 (cellubrevin)







16
37
2.31
2.44
GO0019992
diacylglycerol
14 matches









binding activity





335
CAGCTGAGGGC
0
1
2
0.3
GO0019992
RAS guanyl
[Swissprot:tr|Q9UL









releasing protein 2
65;]









(calcium and DAG-









regulated)





336
CGCACACACAT
1
2
2
0.21
GO0019992
diacylglycerol
[Swissprot:sp|P237









kinase, alpha
43;tr|O75484;tr|O9









8O kDa
5217;tr|Q8IZ56;tr|Q










8N5Q2;]





337
AGGGCAAGGCC
0
2
4
0.6
GO0019992
diacylglycerol
[Swissprot:sp|Q13









kinase, zeta
574;tr|Q8IVW9;]









104 kDa





338
TTTACAGCTGG
5
7
1.4
0.24
GO0019992
diacylglycerol
[Swissprot:sp|Q13









kinase, zeta
574;tr|Q8IVWN9;]









104 kDa





339
CTTTAAAATAT
0
1
2
0.3
GO0019992
protein kinase C,
[Swissprot:sp|P057









beta 1
71;]





340
GGGGACTGGTG
0
2
4
0.6
GO0019992
protein kinase C,
[Swissprot:sp|Q05









delta
655;]





341
GTACTTCCTCT
0
1
2
0.3
GO0019992
protein kinase C,
[Swissprot:sp|Q05









delta
655;]





342
TCAGTGACCAG
1
4
4
0.66
GO0019992
protein kinase C,
[Swissprot:sp|P247









eta
23;tr|Q8NE03;tr|Q9










BVQ0;]





343
TGAAAACCTGA
1
0
−2
0.3
GO0019992
protein kinase C,
[Swissprot:sp|O94









nu
806;tr|Q15451;tr|Q










8NEL8;]





344
CGGTTTCCAAG
1
3
3
0.43
GO0019992
protein kinase C,
[Swissprot:sp|Q05









zeta
513;]





345
GCCTTGATCTC
3
3
1
0
GO0019992
protein kinase D2
[Swissprot:sp|Q9B










ZL6;tr|Q8N2H2;tr|










Q8NCK8;]





346
TGGATTTTGGG
2
3
1.5
0.17
GO0019992
v-raf murine
[Swissprot:sp|P103









sarcoma 3611 viral
98;tr|O96II5;]









oncogene homolog









1





347
TGTATACAAGG
0
5
10
1.51
GO0019992
v-raf-1 murine
[Swissprot:sp|P040









leukemia viral
49;]









oncogene homolog









1





348
GGCCTGGGGGT
2
3
1.5
0.17
GO0019992
vav 3 oncogene
[Swissprot:sp|Q9U










KW4;tr|O60498;]







0
9
18
2.72
GO0030089
phycobilisome
3 matches





349
GTTGCTGTCCC
0
1
2
0.3
GO0030089
hypothetical
[Swissprot:tr|Q9BU









protein MGC4293
89;]





350
TATGAGCACGA
0
3
6
0.91
GO0030089
hypothetical
[Swissprot:tr|Q9BU









protein MGC4293
89;]





351
ACATCATACTG
0
5
10
1.51
GO0030089
importin 4
[Swissprot:tr|Q8NC










G8























TABLE 8











Tags
Ana
Kata
Ratio
Significance
Pattern/description


























10
1
−10
2.19
ME: GLA1
2 matches






352
TTCTCTCCACA
1
0
−2
0.3
ME: GLA1 bone gamma-
Swissprot:








carboxyglutamate (gla) protein
sp|P02818]








(osteocalcin)





353
GTTTATGGATA
9
1
−9
1.92
ME: GLA1 matrix Gla protein
Swissprot:









sp|P08493]







7
22
3.14
2.3
ME: PARKIN_FINGER3
14 matches





354
CCTGGCAGTCA
0
1
2
0.3
ME: PARKIN_FINGER3
Swissprot:








KIAA0708 protein
tr|O75188]





355
ATCTGTCACTT
0
2
4
0.6
ME: PARKIN_FINGER3
Swissprot:








TRIAD3 protein
sp|Q9NWF9]





356
AAGCCTTGCTG
1
5
5
0.91
ME: PARKIN_FINGER3
Swissprot:








ariadne homolog 2
sp|O95376]








(Drosophila)





357
ATGTCAACCAA
0
1
2
0.3
ME: PARKIN_FINGER3
Swissprot:








ariadne homolog 2
sp|O95376]








(Drosophila)





358
TCTGTGGCTCA
0
1
2
0.3
ME: PARKIN_FINGER3
Swissprot:








(Drosophila)





359
TTGAACTGGCC
2
0
−4
0.6
ME: PARKIN_FINGER3
Swissprot:








ariadne homolog 2
sp|O95376]








(Drosophila)





360
ATTAGGAACTG
0
1
2
0.3
ME: PARKIN_FINGER3
Swissprot:








ariadne homolog, ubiquitin-
sp|Q9Y4X5]








conjugating enzyme E2 binding








protein, 1 (Drosophila)





361
GACAAAGCAAG
0
1
2
0.3
ME: PARKIN_FINGER3
Swissprot:








ariadne homolog, ubiquitin-
sp|Q9Y4X5]








conjugating enzyme E2 binding








protein, 1 (Drosophila)





362
CTGACCCAGCC
2
2
1
0
ME: PARKIN_FINGER3
Swissprot:








chromosome 20 open reading
sp|Q9BYM8]








frame 18





363
GTGCAAAATGG
0
1
2
0.3
ME: PARKIN_FINGER3
Swissprot:








frame 18





364
CTCAGGAGAGA
0
2
4
0.6
ME: PARKIN_FINGER3
Swissprot:








hypothetical protein
tr|Q9NTD7]








DKFZP434A0225





365
GCCTGCTCCCT
1
4
4
0.66
ME: PARKIN_FINGER3
Swissprot:








hypothetical protein FLJ10111
tr|Q96EP0]





366
TATACGTTATG
0
1
2
0.3
ME: PARKIN_FINGER3 ring
Swissprot:








finger protein 144
sp|P50876]





367
GGCTGCAGTCT
1
0
−2
0.3
ME: PARKIN_FINGER3 ring
Swissprot:








finger protein 19
sp|Q9NV58]







7
22
3.14
2.3
ME: PARKIN_TRIAD
14 matches





368
CCTGGCAGTCA
0
1
2
0.3
ME: PARKIN_TRIAD KIAA0708
Swissprot:








protein
tr|O75188]





369
ATCTGTCACTT
0
2
4
0.6
ME: PARKIN_TRIAD TRIAD3
Swissprot:








protein
sp|Q9NWF9]





370
AAGCCTTGCTG
1
5
5
0.91
ME: PARKIN_TRIAD ariadne
Swissprot:








homolog 2 (Drosophila)
sp|O95376]





371
ATGTCAACCAA
0
1
2
0.3
ME: PARKIN_TRIAD ariadne
Swissprot:








homolog 2 (Drosophila)
sp|O95376]





372
TCTGTGGCTCA
0
1
2
0.3
ME: PARKIN_TRIAD ariadne
Swissprot:








homolog 2 (Drosophila)
sp|O95376]





373
TTGAACTGGCC
2
0
−4
0.6
ME: PARKIN_TRIAD ariadne
Swissprot:








homolog 2 (Drosophila)
sp|O95376]





374
ATTAGGAACTG
0
1
2
0.3
ME: PARKIN_TRIAD ariadne
Swissprot:








homolog, ubiquitin-conjugating
sp|Q9Y4X5]








enzyme E2 binding protein, 1








(Drosophila)





375
GACAAAGCAAG
0
1
2
0.3
ME: PARKIN_TRIAD ariadne
Swissprot:








homolog, ubiquitin-conjugating
sp|Q9Y4X5]








enzyme E2 binding protein, 1








(Drosophila)





376
CTGACCCAGCC
2
2
1
0
ME: PARKIN_TRIAD
Swissprot:








chromosome 20 open reading
sp|Q9BYM8]








frame 18





377
GTGCAAAATGG
0
1
2
0.3
ME: PARKIN_TRIAD
Swissprot:








chromosome 20 open reading
sp|Q9BYM8]








frame 18





378
CTCAGGAGAGA
0
2
4
0.6
ME: PARKIN_TRIAD
Swissprot:








hypothetical protein
tr|Q9NTD7]








DKFZP434A0225





379
GCCTGCTCCCT
1
4
4
0.66
ME: PARKIN_TRIAD
Swissprot:








hypothetical protein FLJ10111
tr|Q96EP0]





380
TATACGTTATG
0
1
2
0.3
ME: PARKIN_TRIAD ring finger
Swissprot:








protein 144
sp|P50876]





381
GGCTGCAGTCT
1
0
−2
0.3
ME: PARKIN_TRIAD ring finger
Swissprot:








protein 19
sp|Q9NV58]







10
1
−10
2.19
PF: C4
3 matches





382
GACCGCAGGAG
5
1
−5
0.9
PF: C4 collagen, type IV,
Swissprot:








alpha 1
sp|P02462]





383
AAGAACCTGTG
1
0
−2
0.3
PF: C4 collagen, type IV,
Swissprot:








alpha 2
sp|P08572]





384
GTGTCAGTTTT
4
0
−8
1.2
PF: C4 collagen, type IV,
Swissprot:








alpha 6
sp|Q14031]







38
16
−2.38
2.55
PF: CADHERIN_C_TERM
8 matches





385
GTTGTCATCAC
1
0
−2
0.3
PF: CADHERIN_C_TERM
Swissprot:








(Manual) Desmoglein, intemal
sp|Q02413]








tag





386
TGTGGGTGCTG
15
5
−3
1.56
PF: CADHERIN_C_TERM
Swissprot:








cadherin 1, type 1, E-cadherin
sp|P12830]








(epithelial)





387
CCTAGACCTGG
0
1
2
0.3
PF: CADHERIN_C_TERM
Swissprot:








cadherin 11 type 2, OB-
sp|P55287]








cadherin (osteoblast)





388
AGCACCCACCC
0
1
2
0.3
PF: CADHERIN_C_TERM
Swissprot:








cadherin 4, type 1, R-cadherin
sp|P55283]








(retinal)





389
GCCTCAGCCTC
0
1
2
0.3
PF: CADHERIN_C_TERM
Swissprot:








cadherin-like 24
tr|Q9H6Y4]





390
CAGGAGTGTGC
17
5
−3.4
1.96
PF: CADHERIN_C_TERM
Swissprot:








desmocollin 3
sp|Q14574]





391
TATGCCCGAAT
3
2
−1.5
0.16
PF: CADHERIN_C_TERM
Swissprot:








desmocollin 3
sp|Q14574]





392
TAACTGGCCTT
2
1
−2
0.2
PF: CADHERIN_C_TERM
Swissprot:








desmoglein 1
sp|Q02413]







0
12
24
3.62
PF: DPPIV_N_TERM
6 matches





393
CCATTTAAAGC
0
1
2
0.3
PF: DPPIV_N_TERM
Swissprot:








dipeptidylpeptidase 4 (CD26,
sp|P27487]








adenosine deaminase








complexing protein 2)





394
GCTGGGAACCC
0
1
2
0.3
PF: DPPIV_N_TERM
Swissprot:








dipeptidylpeptidase 4 (CD26,
sp|P27487]








adenosine deaminase








complexing protein 2)





395
CTCAAAATCAA
0
1
2
0.3
PF: DPPIV_N_TERM
Swissprot:








dipeptidylpeptidase 8
tr|Q8IWG7]





396
GGGAAACCCCG
0
7
14
2.11
PF: DPPIV_N_TERM
Swissprot:








dipeptidylpeptidase 9
tr|Q8N2J7]





397
GGGGAAACCCC
0
1
2
0.3
PF: DPPIV_N_TERM
Swissprot:








dipeptidylpeptidase 9
tr|Q8N2J7]





398
TGTCTGCCTGA
0
1
2
0.3
PF: DPPIV_N_TERM
Swissprot:








dipeptidylpeptidase 9
tr|Q8N2J7]







5
18
3.6
2.19
PF: GRAM
9 matches





399
GGGCTGCTCTT
2
2
1
0
PF: GRAM KIAA0676
Swissprot:








protein
tr|O75163]





400
CGACAGCGTTC
0
1
2
0.3
PF: GRAM KIAA0767
Swissprot:








protein
tr|Q9Y4B9]





401
TCCTATCCCAG
1
0
−2
0.3
PF: GRAM KIAA0767
Swissprot:








protein
tr|Q9Y4B9]





402
GAAGTACAGTA
0
1
2
0.3
PF: GRAM KIAA1201
Swissprot:








protein
tr|Q9ULL9]





403
GACAGATGGAC
0
2
4
0.6
PF: GRAM KIAA1533
Swissprot:








protein
tr|Q8NC77]





404
AAGTGAGGAGA
1
6
6
1.16
PF: GRAM WW domain
Swissprot:








binding protein 2
sp|Q969T9]





405
TGCCGTGCCTG
0
5
10
1.51
PF: GRAM myotubularin
Swissprot:








related protein 1
sp|Q13613]





406
TAAAAGATGTA
1
0
−2
0.3
PF: GRAM myotubularin
Swissprot:








related protein 2
sp|Q13614]





407
TTACACTGTAA
0
1
2
0.3
PF: GRAM neutral
Swissprot:








sphingomyelinase (N-SMase)
sp|Q92636]








activation associated factor







30
13
−2.31
2
PF: GTP_CDC
11 matches





408
ATTGTACAACA
1
0
−2
0.3
PF: GTP_CDC CDC10 cell
Swissprot:








division cycle 10 homolog (S.
sp|Q16181]









cerevisiae)






409
GCCTCTTGAAG
10
6
−1.67
0.47
PF: GTP_CDC CDC10 cell
Swissprot:








division cycle 10 homolog (S.
sp|Q16181]









cerevisiae)






410
GCCAACGGCGT
1
0
−2
0.3
PF: GTP_CDC MLL septin-
Swissprot:








like fusion
tr|Q96QF3]





411
TGGCCTGCCCA
7
3
−2.33
0.64
PF: GTP_CDC MLL septin-
Swissprot:








like fusion
tr|Q96QF3]





412
CTTGGTAATTT
1
0
−2
0.3
PF: GTP_CDC hypothetical
Swissprot:








protein FLJ10849
tr|Q96KC0]





413
TTGCCTGCAGT
0
1
2
0.3
PF: GTP_CDC hypothetical
Swissprot:








protein FLJ10849
tr|Q96KC0]





414
AGTGTATCACA
1
0
−2
0.3
PF: GTP_CDC hypothetical
Swissprot:








protein FLJ11619
tr|Q9H9P7]





415
CGGAGTCCATT
7
1
−7
1.4
PF: GTP_CDC neural
Swissprot:








precursor cell expressed,
sp|Q15019]








developmentally down-








regulated 5





416
ATCCCTTCCCG
1
0
−2
0.3
PF: GTP_CDC peanut-like 1
Swissprot:








(Drosophila)
sp|Q99719]





417
GGGCACAATGC
1
0
−2
0.3
PF: GTP_CDC peanut-like 1
Swissprot:








(Drosophila)
sp|Q99719]





418
TGGCTGTTAAT
0
2
4
0.6
PF: GTP_CDC septin 6
Swissprot:









sp|Q14141]







3
20
6.67
3.57
PF: PEPTIDASE_S9
9 matches





419
AGCTGATCAGC
1
3
3
0.43
PF: PEPTIDASE_S9 N-
Swissprot:








acylaminoacyl-peptide
sp|P13798]








hydrolase





420
CCATTTAAAGC
0
1
2
0.3
PF: PEPTIDASE_S9
Swissprot:








dipeptidylpeptidase 4 (CD26,
sp|P27487]








adenosine deaminase








complexing protein 2)





421
GCTGGGAACCC
0
1
2
0.3
PF: PEPTIDASE_S9
Swissprot:








dipeptidylpeptidase 4 (CD26,
sp|P27487]








adenosine deaminase








complexing protein 2)





422
CTCAAAATCAA
0
1
2
0.3
PF: PEPTIDASE_S9
Swissprot:








dipeptidylpeptidase 8
tr|Q8IWG7]





423
GGGAAACCCCG
0
7
14
2.11
PF: PEPTIDASE_S9
Swissprot:








dipeptidylpeptidase 9
tr|Q8N2J7]





424
GGGGAAACCCC
0
1
2
0.3
PF: PEPTIDASE_S9
Swissprot:








dipeptidylpeptidase 9
tr|Q8N2J7]





425
TGTCTGCCTGA
0
1
2
0.3
PF: PEPTIDASE_S9
Swissprot:








dipeptidylpeptidase 9
tr|Q8N2J7]





426
GAGAAGACTTC
1
3
3
0.43
PF: PEPTIDASE_S9 prolyl
Swissprot:








endopeptidase
sp|P48147]





427
ATTTTTGGTGG
1
2
2
0.21
PF: PEPTIDASE_S9 putative L-
Swissprot:








type neutral amino acid
tr|O43163]








transporter







200
260
1.3
2.35
PF: RIBOSOMAL_S4E
6 matches





428
ACTCTTAATGT
0
2
4
0.6
PF: RIBOSOMAL_S4E
Swissprot:








ribosomal protein S4, X-linked
sp|P12750]





429
ATGCCCGCACC
2
1
−2
0.2
PF: RIBOSOMAL_S4E
Swissprot:








ribosomal protein S4, X-linked
sp|P12750]





430
GACAGGTAAAG
1
0
−2
0.3
PF: RIBOSOMAL_S4E
Swissprot:








ribosomal protein S4, X-linked
sp|P12750]





431
GATTTTTTTTC
0
1
2
0.3
PF: RIBOSOMAL_S4E
Swissprot:








ribosomal protein S4, X-linked
sp|P12750]





432
TCAGATCTTTG
196
255
1.3
2.32
PF: RIBOSOMAL_S4E
Swissprot:








ribosomal protein S4, X-linked
sp|P12750]





433
TCAGATTTTTG
1
1
1
0
PF: RIBOSOMAL_S4E
Swissprot:








ribosomal protein S4, X-linked
sp|P12750]


























TABLE 9












Ana-
Kata-

Signifi-







Tags
gen
gen
Quot.
cance
Word
Description
Swiss-prot



























1
16
16
3.85
aciduria
3 matches







434
GAGAGCTACAT
1
5
5
0.91
aciduria
electron-transfer-
Swissprot: sp|









flavoprotein, alpha
P13804









polypeptide (glutaric









aciduria II)





435
GCGATGGCCGT
0
10
20
3.02
aciduria
methylmalonic aciduria
Swissprot: tr|









(cobalamin deficiency)
Q96EY8









type B





436
GTCTGCCCTCT
0
1
2
0.3
aciduria
mevalonate kinase
Swissprot: sp|









(mevalonic aciduria)
Q03426







19
5
−3.8
2.38
angiopoletin
3 matches





437
GTGCTGGTGCT
1
1
1
0
angiopoietin
angiopoietin-like 4
Swissprot: sp|










Q9BY76





438
GATGCCGGCAC
17
4
−4.25
2.35
angiopoietin
angiopoietin-like factor
Swissprot: tr|










O43827





439
CTCATTCGGCC
1
0
−2
0.3
angiopoietin
angiopoietin-related
Swissprot: tr|









protein 5
Q8N199







2
12
6.03
2.14
autophagy
4 matches





440
GAGATTGAGGG
0
2
4.02
0.6
autophagy
APG10 autophagy 10-
Swissprot: tr|









like (S. cerevisiae)
Q9H0Y0





441
AAAGTGGAAAC
0
1
2.01
0.3
autophagy
APG5 autophagy 5-like
Swissprot: sp|









(S. cerevisiae)
Q9H1Y0





442
CTGAGGTGATG
0
2
4.02
0.6
autophagy
autophagy
Swissprot: tr|









Apg3p/Aut1p-like
Q9H6L9





443
TCGGGTGTGGG
2
7.01
3.51
0.97
autophagy
cysteine protease
Swissprot: tr|









involved in autophagy
Q969K0









APG4-D







6
21
3.5
2.44
camp
11 matches





444
CAATGTCTTCA
0
1
2
0.3
camp
Homo sapiens cDNA









FLJ33024 fis, clone









THYMU1000532,









moderately similar to









HIGH-AFFINITY CAMP-









SPECI . . .





445
CCTCAGGCTCC
0
2
4
0.6
camp
cAMP responsive
Swissprot: tr|









element binding protein
O14671









3 (luman)





446
GACACCAGGGT
2
5
2.5
0.54
camp
cAMP responsive
Swissprot: sp|









element binding protein-
P22105









like 1





447
TTAATAAATGT
1
1
1
0
camp
cAMP responsive
Swissprot: tr|









element binding protein-
O60519









like 2





448
TTGGTTGCACT
0
1
2
0.3
camp
cAMP responsive
Swissprot: sp|









element modulator
Q03060





449
CCCCGGGCCTC
1
0
−2
0.3
camp
phosphodiesterase 4A,









cAMP-specific









(phosphodiesterase E2









dunce homolog,









Drosophila)





450
GAGCTCCACAG
0
2
4
0.6
camp
protein kinase (cAMP-
Swissprot:









dependent, catalytic)
sp|Q9Y2B9









inhibitor gamma





451
TCCCCCCATTC
0
1
2
0.3
camp
protein kinase, cAMP-
Swissprot:









dependent, catalytic,
sp|P17612









alpha





452
TTCAGTGGGTT
1
1
1
0
camp
protein kinase, cAMP-
Swissprot:









dependent, catalytic,
sp|P17612









alpha





453
ACCAATTTAAA
0
1
2
0.3
camp
protein kinase, cAMP-









dependent, regulatory,









type I, alpha (tissue









specific extinguisher 1)





454
TGTGCTAATAT
1
6
6
1.16
camp
protein kinase, cAMP-









dependent, regulatory,









type I, alpha (tissue









specific extinguisher 1)







27
7
−3.86
3.27
desmocollin
4 matches





455
GCATAGTTCTA
2
0
−4
0.6
desmocollin
(Manual) DSC2
Swissprot: sp|









Desmocollin-2A/2B
Q02487









(reverse tag)





456
AGAGTCATACA
5
0
−10
1.5
desmocollin
(Manual) DSC2
Swissprot: sp|









Desmocollin-2A/2B
Q02487





457
CAGGAGTGTGC
17
5
−3.4
1.96
desmocollin
desmocollin 3
Swissprot: sp|










Q14574





458
TATGCCCGAAT
3
2
−1.5
0.16
desmocollin
desmocollin 3
Swissprot: sp|










Q14574







7
0
−14
2.1
dsc2
2 matches





459
GCATAGTTCTA
2
0
−4
0.6
dsc2
(Manual) DSC2
Swissprot: sp|









Desmocollin-2A/2B
Q02487









(reverse tag)





460
AGAGTCATACA
5
0
−10
1.5
dsc2
(Manual) DSC2
Swissprot: sp|









Desmocollin-2A/2B
Q02487







46
20
−2.3
2.86
gelsolin
3 matches





461
CTCCCCTGCCC
8
5
−1.6
0.37
gelsolin
capping protein (actin
Swissprot: sp|









filament), gelsolin-like
P40121





462
TTCCCCTGCCC
1
0
−2
0.3
gelsolin
capping protein (actin
Swissprot: sp|









filament), gelsolin-like
P40121





463
TCACCGGTCAG
37
15
−2.47
2.64
gelsolin
gelsolin (amyloidosis,
Swissprot: sp|









Finnish type)
P06396







10
1
−10
2.19
gla
2 matches





464
TTCTCTCCACA
1
0
−2
0.3
gla
bone gamma-
Swissprot:









carboxyglutamate (gla)
sp|P02818









protein (osteocalcin)





465
GTTTATGGATA
9
1
−9
1.92
gla
matrix Gla protein
Swissprot: sp|










P08493







111
64
−1.73
3.39
lysosomal
38 matches





466
CAGTAAAAAAA
1
0
−2
0.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
O75348









13 kDa, V1 subunit G









isoform 1





467
CATTTTTCCCC
0
1
2
0.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
O75348









13 kDa, V1 subunit G









isoform 1





468
TAACAAGTTCT
1
0
−2
0.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
O75348









13 kDa, V1 subunit G









isoform 1





469
TATATCAGTGT
1
1
1
0
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
O75348









13 kDa, V1 subunit G









isoform 1





470
TATTACTTGGT
1
0
−2
0.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
O75348









13 kDa, V1 subunit G









isoform 1





471
TTCACTGCCGA
1
1
1
0
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
Q16864









14 kDa, V1 subunit F





472
CGCAGTGTCCT
10
4
−2.5
0.92
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
P27449









16 kDa, V0 subunit c





473
TTTGGGGCTGG
12
4
−3
1.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
Q99437









21 kDa, V0 subunit c″





474
AATATGCTTTA
3
3
1
0
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
P36543









31 kDa, V1 subunit E









isoform 1





475
GGAGCCATTCT
3
1
−3
0.42
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
Q9Y5K8









34 kDa, V1 subunit D





476
GGAAGGACAGA
7
3
−2.33
0.64
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
P12953









38 kDa, V0 subunit d









isoform 1





477
AAATACAGCAG
3
4
1.33
0.14
lysosomal
ATPase, H+
Swissprot: tr|









transporting, lysosomal
Q8NEY4









42 kDa, V1 subunit C









isoform 2





478
GCCGCCATCAA
3
1
−3
0.42
lysosomal
ATPase, H+
Swissprot: tr|









transporting, lysosomal
Q8NEY4









42 kDa,V1 subunit C









isoform 2





479
TTTGCCTGTTA
0
1
2
0.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
Q9UI12









50/57 kDa, V1 subunit H





480
TTTTTACAGTG
1
0
−2
0.3
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
P38606









70 kDa, V1 subunit A,









isoform 1





481
CTCTACAGTGC
1
1
1
0
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
O15342









9 kDa, V0 subunit e





482
TGGCTGTGAGG
3
3
1
0
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
Q93050









V0 subunit a isoform 1





483
GGGTGCTTGGT
4
4
1
0
lysosomal
ATPase, H+
Swissprot: sp|









transporting, lysosomal
Q15904









interacting protein 1





484
AATGTGATTTC
0
1
2
0.3
lysosomal
Homo sapiens cDNA
Homo









FLJ33528 fis, clone
sapiens









BRAMY2007110, highly
cDNA









similar to LYSOSOMAL
FLJ33528









PRO-X
fis, clone









CARBOXYPEPTI . . .
BRAMY2007










110, highly










similar to










LYSOSOMA










L PRO-X










CARBOXYP










EPTI . . .





485
GCGGTTGTGGC
3
2
−1.5
0.16
lysosomal
Lysosomal-associated
Swissprot: sp|









multispanning
Q13571









membrane protein-5





486
CACCAGGCCAT
1
0
−2
0.3
lysosomal
T-cell, immune regulator









1, ATPase, H+









transporting, lysosomal









V0 protein a isoform 3





487
GTGATGCGCAT
1
1
1
0
lysosomal
T-cell, immune regulator









1, ATPase, H+









transporting, lysosomal









V0 protein a isoform 3





488
CAGGTTGTGAG
2
0
−4
0.6
lysosomal
acid phosphatase 2,
Swissprot: sp|









lysosomal
P11117





489
GAAATACAGTT
15
11
−1.36
0.35
lysosomal
cathepsin D (lysosomal
Swissprot: sp|









aspartyl protease)
P07339





490
AGCTGAGCTAA
4
2
−2
0.34
lysosomal
deoxyribonuclease II,
Swissprot: sp|









lysosomal
O00115





491
AGAAGTGTCCT
3
0
−6
0.9
lysosomal
lipase A, lysosomal acid,
Swissprot: sp|









cholesterol esterase
P38571









(Wolman disease)





492
GGGCTCTGAGC
1
1
1
0
lysosomal
lysophospholipase 3
Swissprot: tr|









(lysosomal
Q8NCC3









phospholipase A2)





493
TCACTTGCTGT
0
1
2
0.3
lysosomal
lysosomal apyrase-like 1
Swissprot: sp|










Q9Y227





494
ATAATTTTTAA
1
0
−2
0.3
lysosomal
lysosomal-associated
Swissprot: sp|









membrane protein 1
P11279





495
CTCACACATTA
7
3
−2.33
0.64
lysosomal
lysosomal-associated
Swissprot: sp|









membrane protein 1
P11279





496
CAAATAACAAG
2
0
−4
0.6
lysosomal
lysosomal-associated
Swissprot: sp|









membrane protein 2
P13473





497
CAACTGCCTAT
2
0
−4
0.6
lysosomal
lysosomal-associated
Swissprot: sp|









membrane protein 2
P13473





498
GCCATTATAAG
2
0
−4
0.6
lysosomal
lysosomal-associated
Swissprot: sp|









membrane protein 2
P13473





499
TTTTTTCTTCA
0
1
2
0.3
lysosomal
lysosomal-associated
Swissprot: sp|









membrane protein 2
P13473





500
CAACCATCATC
4
0
−8
1.2
lysosomal
lysosomal-associated
Swissprot: sp|









protein transmembrane
Q15012









4 alpha





501
TTTCTAGTTTG
5
6
1.2
0.11
lysosomal
lysosomal-associated
Swissprot: sp|









protein transmembrane
Q15012









4 alpha





502
ACTGACTATCA
1
1
1
0
lysosomal
sialidase 1 (lysosomal
Swissprot: sp|









sialidase)
Q99519





503
GAGTAGAGGCC
2
2
1
0
lysosomal
sphingomyelin
Swissprot: sp|









phosphodiesterase 1,
P17405









acid lysosomal (acid









sphingomyelinase)







91
59
−1.54
2.01
monooxy-
16 matches








genase





504
ACGACAAAGCT
0
1
2
0.3
monooxy-
peptidylglycine alpha-
Swissprot: sp|








genase
amidating
P19021









monooxygenase





505
CAGTTACTTAG
3
3
1
0
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, beta









polypeptide





506
CTTTTCAGCAA
3
2
−1.5
0.16
monooxy-
tyrosine 3-
Swissprot:








genase
monooxygenase/tryptop
SWALL:









han 5-monooxygenase
AAP35825









activation protein,









epsilon polypeptide





507
GAATTAACATT
3
4
1.33
0.14
monooxy-
tyrosine 3-
Swissprot:








genase
monooxygenase/tryptop
SWALL:









han 5-monooxygenase
AAP35825









activation protein,









epsilon polypeptide





508
GCGCTGTCAGG
3
1
−3
0.42
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, eta









polypeptide





509
TCAATCAAGAT
1
2
2
0.21
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, eta









polypeptide





510
AATGTGAGTCA
5
7
1.4
0.24
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein,









gamma polypeptide





511
TCACTATAGCA
1
0
−2
0.3
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein,









gamma polypeptide





512
CTCTTAATGTA
1
0
−2
0.3
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, theta









polypeptide





513
GGCCATCTCTT
30
17
−1.76
1.21
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, theta









polypeptide





514
TGAAAGGGTGT
1
0
−2
0.3
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, theta









polypeptide





515
TGAGAGGGTGT
25
10
−2.5
1.93
monooxy-
tyrosine 3-








genase
monooxygenase/tryptop









han 5-monooxygenase









activation protein, theta









polypeptide





516
ATCTTTCTGGC
10
5
−2
0.67
monooxy-
tyrosine 3-
Swissprot:








genase
monooxygenase/tryptop
SWALL:









han 5-monooxygenase
AAH50891









activation protein, zeta









polypeptide





517
GCCACCAAGTA
2
0
−4
0.6
monooxy-
tyrosine 3-
Swissprot:








genase
monooxygenase/tryptop
SWALL:









han 5-monooxygenase
AAH50891









activation protein, zeta









polypeptide





518
TAAGTGGAATA
2
6
3
0.75
monooxy-
tyrosine 3-
Swissprot:








genase
monooxygenase/tryptop
SWALL:









han 5-monooxygenase
AAH50891









activation protein, zeta









polypeptide





519
TTAGGCAAGTA
1
1
1
0
monooxy-
tyrosine 3-
Swissprot:








genase
monooxygenase/tryptop
SWALL:









han 5-monooxygenase
AAH50891









activation protein, zeta









polypeptide







755
153
−4.93
95.23
rrna
22 matches





520
AATGGATGAAC
2
0
−4
0.6
rrna
rRNA intermediate tag
Swissprot:










none





521
ATTAAGAGGGA
5
2
−2.5
0.53
rrna
rRNA intermediate tag
Swissprot:










none





522
CCAGAGGCTGT
17
4
−4.25
2.35
rrna
rRNA intermediate tag
Swissprot:










none





523
CCGACGGGCGC
15
1
−15
3.55
rrna
rRNA intermediate tag
Swissprot:










none





524
CGCGTCACTAA
8
0
−16
2.4
rrna
rRNA intermediate tag
Swissprot:










none





525
CTAACTAGTTA
2
0
−4
0.6
rrna
rRNA intermediate tag
Swissprot:










none





526
GCAACAACACA
19
4
−4.75
2.8
rrna
rRNA intermediate tag
Swissprot:










none





527
GCCGTTCTTAG
46
8
−5.75
7.06
rrna
rRNA intermediate tag
Swissprot:










none





528
CCTGTCATCCC
2
2
1
0
rrna
rRNA intermediate tag,
Swissprot:









Alu
none





529
GAACCCTTCTC
2
0
−4
0.6
rrna
rRNA intermediate tag,
Swissprot:









Alu
none





530
ACCCGCCGGGC
26
11
−2.36
1.84
rrna
rRNA major tag
Swissprot:










none





531
AGAGGTGTAGA
19
2
−9.5
3.9
rrna
rRNA major tag
Swissprot:










none





532
GAAGTCGGAAT
11
4
−2.75
1.11
rrna
rRNA major tag
Swissprot:










none





533
GGTCAGTCGGT
14
3
−4.67
2.11
rrna
rRNA major tag
Swissprot:










none





534
GTAATCCTGCT
24
8
−3
2.33
rrna
rRNA major tag
Swissprot:










none





535
GTGACCACGGG
493
68
−7.25
79.68
rrna
rRNA major tag
Swissprot:










none





536
TGGCGTACGGA
4
3
−1.33
0.14
rrna
rRNA major tag
Swissprot:










none





537
TTGGAACAATG
3
1
−3
0.42
rrna
rRNA major tag
Swissprot:










none





538
AGCCACCGCGC
1
2
2
0.21
rrna
rRNA major tag, Alu
Swissprot:










none





539
CCTATAATCCC
5
5
1
0
rrna
rRNA major tag, Alu
Swissprot:










none





540
TTGGTCAGGCT
33
24
−1.38
0.61
rrna
rRNA major tag, Alu
Swissprot:










none





541
GTAGGCACGGC
4
1
−4
0.66
rrna
rRNA minor tag
Swissprot:










none







46
20
−2.3
2.86
seleno-
14 matches








protein





542
TAAGCCCTTTT
1
0
−2
0.3
seleno-
15 kDa selenoprotein
Swiss-prot:








protein

sp|O60613





543
TGCTGTGTGCT
3
0
−6
0.9
seleno-
15 kDa selenoprotein
Swiss-








protein

prot: sp|O606










13





544
GGCAGAGGGCT
5
2
−2.5
0.53
seleno-
elongation factor for
Swissprot: sp|








protein
selenoprotein translation
P57772





545
GTTTCTTCCCT
5
0
−10
1.5
seleno-
selenoprotein H
Swissprot: tr|








protein

Q8IZQ5





546
CAGTTCCATAA
4
1
−4
0.66
seleno-
selenoprotein K
Swissprot: sp|








protein

Q9Y6D0





547
CCCTGTAATAA
4
4
1
0
seleno-
selenoprotein N, 1
Swissprot: sp|








protein

Q9NZV5





548
AATAAAGCCTT
6
2
−3
0.74
seleno-
selenoprotein P,
Swissprot: sp|








protein
plasma, 1
P49908





549
GAGAAATCTAC
0
1
2
0.3
seleno-
selenoprotein P,
Swissprot: sp|








protein
plasma, 1
P49908





550
TCTTTGTTGTT
6
1
−6
1.15
seleno-
selenoprotein P,
Swissprot: sp|








protein
plasma, 1
P49908





551
TGTGATAGTAA
1
2
2
0.21
seleno-
selenoprotein P,
Swissprot: sp|








protein
plasma, 1
P49908





552
CCTTGACCAAT
2
3
1.5
0.17
seleno-
selenoprotein T
Swissprot: sp|








protein

Q9NZJ3





553
GTGTGGTATTC
2
0
−4
0.6
seleno-
selenoprotein T
Swissprot: sp|








protein

Q9NZJ3





554
TCTTCCCCAGT
4
2
−2
0.34
seleno-
selenoprotein W, 1
Swissprot: sp|








protein

O15532





555
CTCGGAGGCCT
3
2
−1.5
0.16
seleno-
selenoprotein X, 1
Swissprot: sp|








protein

Q9NZV6







91
58
−1.57
2.13
tryptophan
15 matches





556
CAGTTACTTAG
3
3
1
0
tryptophan
tyrosine 3-









monooxygenase/









tryptophan 5-









monooxygenase









activation protein, beta









polypeptide





557
CTTTTCAGCAA
3
2
−1.5
0.16
tryptophan
tyrosine 3-
Swisaprot:









monooxygenase/
SWALL:









tryptophan 5-
AAP35825









monooxygenase









activation protein,









epsilon polypeptide





558
GAATTAACATT
3
4
1.33
0.14
tryptophan
tyrosine 3-monooxy-
Swissprot:









genase/tryptophan 5-
SWALL:









monooxygenase
AAP35825









activation protein,









epsilon polypeptide





559
GCGCTGTCAGG
3
1
−3
0.42
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein, eta









polypeptide





560
TCAATCAAGAT
1
2
2
0.21
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein, eta









polypeptide





561
AATGTGAGTCA
5
7
1.4
0.24
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein,









gamma polypeptide





562
TCACTATAGCA
1
0
−2
0.3
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein,









gamma polypeptide





563
CTCTTAATGTA
1
0
−2
0.3
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein, theta









polypeptide





564
GGCCATCTCTT
30
17
−1.76
1.21
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein, theta









polypeptide





565
TGAAAGGGTGT
1
0
−2
0.3
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein, theta









polypeptide





566
TGAGAGGGTGT
25
10
−2.5
1.93
tryptophan
tyrosine 3-monooxy-









genase/tryptophan 5-









monooxygenase









activation protein, theta









polypeptide





567
ATCTTTCTGGC
10
5
−2
0.67
tryptophan
tyrosine 3-monooxy-
Swissprot:









genase/tryptophan 5-
SWALL:









monooxygenase
AAH50891









activation protein, zeta









polypeptide





568
GCCACCAAGTA
2
0
−4
0.6
tryptophan
tyrosine 3-monooxy-
Swissprot:









genase/tryptophan 5-
SWALL:









monooxygenase
AAH50891









activation protein, zeta









polypeptide





569
TAAGTGGAATA
2
6
3
0.75
tryptophan
tyrosine 3-monooxy-
Swissprot:









genase/tryptophan 5-
SWALL:









monooxygenase
AAH50891









activation protein, zeta









polypeptide





570
TTAGGCAAGTA
1
1
1
0
tryptophan
tyrosine 3-monooxy-
Swissprot:









genase/tryptophan 5-
SWALL:









monooxygenase
AAH50891









activation protein, zeta









polypeptide









Claims
  • 1. An in vitro method for determining hair cycle phase in humans, comprising: a) providing a plurality of genetically encoded markers isolated from hair covered human skin or from human hair follicles which are differentially expressed at an anagenic phase of the hair cycle when compared to expression in cells in the catagenic phase of the hair cycle; b) obtaining a sample of hair covered skin or human hair follicles; c) analyzing the sample of b) for the presence and optionally the quantity of at least one genetically encoded molecule which is differentially expressed in anagenic and catagenic hair follicles and d) designating the sample as comprising healthy cells in the anagenic phase of the cycle if it contains markers which are expressed at higher levels in anagenic hair follicles or cells in regression in the catagenic phase if it contains molecules which are expressed at higher levels in catagenic hair follicles.
  • 2. The method of claim 1 wherein said genetically encoded markers comprise at least one mRNA molecule, at least one protein or polypeptide or fragments thereof.
  • 3. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 434 to SEQ ID NO: 570 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed more strongly in anagenic hair follicles than in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the sample contains molecules which are expressed more strongly in catagenic hair follicles than in anagenic hair follicles.
  • 4. The method of claim 1 wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 352 to SEQ ID NO: 433 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed more strongly in anagenic hair follicles than in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the sample contains molecules which are expressed more strongly in catagenic hair follicles than in anagenic hair follicles.
  • 5. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 142 to SEQ ID NO: 351 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed more strongly in anagenic hair follicles than in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the sample contains molecules which are expressed more strongly in catagenic hair follicles than in anagenic hair follicles.
  • 6. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 105 to SEQ ID NO: 141 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed at least twice as strongly in anagenic hair follicles when compared to expression in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if it contains molecules which are expressed at least twice as strongly in catagenic hair follicles than in anagenic hair follicles.
  • 7. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 43 to SEQ ID NO: 104 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed at least five times more strongly in anagenic hair follicles when compared to expression in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the sample contains molecules which are expressed at least five times more strongly in catagenic hair follicles than in anagenic hair follicles.
  • 8. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 29 to SEQ ID NO: 42 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed at least 1.3 times more strongly in anagenic hair follicles when compared to expression in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the sample contains molecules which are expressed at least 1.3 times more strongly in catagenic hair follicles than in anagenic hair follicles.
  • 9. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 13 to SEQ ID NO: 28 or the corresponding gene product and the sample is designated as healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed at twice as strongly in anagenic hair follicles when compared to expression in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if it contains molecules which are expressed at least twice as strongly in catagenic hair follicles than in anagenic hair follicles.
  • 10. The method of claim 1, wherein said sample is assessed for the presence and optionally the quantity of a molecule selected from the group consisting of SEQ ID NO: 1 to SEQ ID NO: 12 or the corresponding gene product and the sample is designated as comprising healthy cells in the anagenic phase of the hair cycle if it contains molecules which are expressed at five times more strongly in anagenic hair follicles when compared to expression in catagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the sample contains molecules which are expressed at least five times more strongly in catagenic hair follicles than in anagenic hair follicles.
  • 11. A method as claimed in claim 1, comprising a) quantifying expression levels of at least two molecules in the sample which are differentially expressed in cells from the anagenic phase of the hair cycle when compared to expression levels in the catagenic phase of the hair cycle; b) determining the expression ratios of said at least two molecules thereby forming an expression quotient; and c) comparing the expression ratios obtained with those in column 5 of Tables 2 to 6 and designating the sample as comprising healthy cells in the anagenic phase of the hair cycle if the expression ratios observed in the follicles correspond to the ratios observed in anagenic hair follicles or cells in regression in the catagenic phase of the hair cycle if the expression ratios correspond to those observed in catagenic hair follicles.
  • 12. A test kit for determining hair cycle phase in humans, said test kit comprising reagents suitable for performing the method of claim 1.
  • 13. A test kit for determining hair cycle phase in humans, said test kit comprising reagents suitable for performing the method of claim 11.
  • 14. A biochip for determining the hair cycle phase in human beings in vitro comprising a solid, i.e. rigid or flexible, carrier and a plurality of probes immobilized thereon which are capable of specifically binding to at least one molecule selected from the group consisting of SEQ ID NO: 1 to SEQ ID NO: 570 or the corresponding gene product.
  • 15. A marker for determining hair cycle phase in human beings in vitro, selected from the group consisting of at least one molecule having a Swissprot Accession Number provided in column 8 of Table 8, a Swissprot Accession Number provided in column 9 of Table 7, a Swissprot Accession Number provided in column 9 of Table 9, a UniGene Accession Number provided in column 7 of Tables 2 to 6, and a Swissprot Accession Number in column 8 of Tables 2 to 6.
  • 16. An in vitro method for identifying a pharmaceutically active agent which modulates the hair cycle, comprising a) providing a sample hair covered human skin or human follicles comprising cells; b) determining the phase of the hair cycle of said sample as claimed in claim 1;c) contacting said cells with said agent at least once; and d) repeating step b) to determine whether said agent alters the phase of the hair cycle.
  • 17. The method of claim 16, wherein said cells are diseased and exhibit an impairment of hair growth.
  • 18. The method of claim 16, wherein said agent stimulates cells to enter the anagen phase of hair growth.
  • 19. The method of claim 16, performed on a biochip.
  • 20. A test kit for identifying a pharmaceutically active agent which modulates the hair cycle, comprising means for carrying out the test method claimed in claim 16.
  • 21. A marker for use in the method of claim 16, selected from the group consisting of at least one molecule or fragment thereof having a Swissprot Accession Number provided in column 8 of Table 8, a Swissprot Accession Number provided in column 9 of Table 7, A Swissprot Accession Number provided in column 9 of Table 9, a UniGene Accession Number in column 7 of Tables 2 to 6, and a Swissprot Accession Number in column 8 of Tables 2 to 6 or the corresponding gene product.
  • 22. A pharmaceutical preparation comprising the agent identified in claim 16 having efficacy against diseases or impairment of hair and its growth in a pharmaceutically acceptable carrier.
Priority Claims (1)
Number Date Country Kind
103 40 373.6 Aug 2003 DE national
CROSS REFERENCE TO RELATED APPLICATIONS

This application is a §365 (c) continuation application of PCT/EP2004/009435 filed 24 Jul. 2004, which in turn claims priority to DE application 103 40 373.6 filed 30 Aug. 2003. Each of the foregoing applications is incorporated herein by reference.

Continuations (1)
Number Date Country
Parent PCT/EP04/09435 Jul 2004 US
Child 11364118 Feb 2006 US