Patent Application
20240018185
The technology of the present disclosure relates to a method for estimating a purified state in a case in which a purification treatment is performed on a liquid including a specific protein.
The following technique is known as a technique related to purification of proteins such as antibodies produced by cells. For example, US2020/0062802A discloses a technique that quantifies a purification intermediate of a protein which is being produced using in-line Raman spectroscopy.
In production of biopharmaceuticals, a protein, such as an antibody, which is a biopharmaceutical drug substance produced from cultured cells, is purified and formulated. In a protein purification step, for example, a purification treatment is performed by a plurality of different chromatography methods, such as cation chromatography, anion chromatography, immunoaffinity chromatography, and gel filtration chromatography, to increase the purity of a target protein stepwise. It is preferable to monitor the purified state in order to verify whether or not the purification treatment is appropriately performed in each step. In particular, it is important to quantify impurities separated from the target protein in each step. The reason is that, in a case in which impurities other than the target protein are mixed in the medicine, the impurities are likely to affect the efficacy of the medicine even though the amount of impurities is very small. In the purification step, the purity of the target protein is increased stepwise, and the amount of impurities included in the treatment liquid treated in each step is very small. Therefore, it is not easy to quantify the impurities. US2020/0062802A discloses a technique that quantifies the purification intermediate of the protein which is being produced, but does not disclose the quantification of impurities.
The technology of the present disclosure has been made in view of the above-described points, and an object of the technology of the present disclosure is to provide a method for estimating a purified state that can estimate the concentration of impurities with high accuracy even in a case in which the amount of impurities other than a protein, which is included in a treatment liquid subjected to a protein purification treatment, is very small.
According to the technology of the present disclosure, there is provided a method for estimating a purified state. The method comprises: quantifying a component that is included in a treatment liquid obtained by performing a purification treatment on a liquid including a specific protein and impurities other than the protein; and acquiring an estimated value of a concentration of the impurities on the basis of spectral data indicating an intensity of electromagnetic waves, which have been emitted to the treatment liquid and have been subjected to an action of the treatment liquid, for each wave number or wavelength. The concentration of the impurities included in the treatment liquid may be equal to or less than 20 mg/mL, and a weight ratio of the impurities to a mixture including the protein and the impurities may be equal to or less than 15%.
According to the technology of the present disclosure, there is provided a method for estimating a purified state. The method comprises: quantifying a component that is included in a treatment liquid obtained by performing a purification treatment on a liquid including a specific protein and impurities other than the protein; and acquiring an estimated value of a concentration of an immature sugar chain that has a structure similar to that of the protein on the basis of spectral data indicating an intensity of electromagnetic waves, which have been emitted to the treatment liquid and have been subjected to an action of the treatment liquid, for each wave number or wavelength.
The method for estimating a purified state according to the technology of the present disclosure may further comprise acquiring an estimated value of a concentration of the protein included in the treatment liquid on the basis of the spectral data. The specific protein may be produced from a cultured cell. The impurities may include DNA of a cell producing a specific antibody, an aggregate of the protein, a decomposition product of the protein, and a host cell protein. The purification treatment may include a component separation method using chromatography. A determination coefficient indicating a degree of match of the estimated value of the concentration of the impurities with a measured value may be equal to or greater than 0.9. A root mean squared error indicating a degree of deviation of the estimated value of the concentration of the impurities from a measured value may be equal to or less than 1.2.
The estimation method according to the technology of the present disclosure may further comprise: constructing a soft sensor, which receives the spectral data as an input and outputs state data indicating a purified state of the liquid including the protein and the impurities, with machine learning using a plurality of combinations of the state data and the spectral data as training data; and inputting the spectral data acquired for the treatment liquid to the soft sensor and acquiring the state data output from the soft sensor. The state data may include the estimated value of the concentration of the impurities included in the treatment liquid.
The method for estimating a purified state according to the technology of the present disclosure may further comprise: performing preprocessing on the spectral data; and constructing the soft sensor with machine learning using a plurality of combinations of processed data obtained by the preprocessing and the state data as training data. The preprocessing may include a process of selecting, from spectral intensity values for each wave number or wavelength included in the spectral data, a spectral intensity value used as the training data. Among the spectral intensity values for each wave number or wavelength included in the spectral data, the number of spectral intensity value selected to be used as the training data may be equal to or greater than 5 and less than 1000. The selection may be performed by sparse modeling. The preprocessing may include specifying high-correlation spectral data having a relatively high correlation with the state data among the spectral data as the processed data. The preprocessing may include a baseline correction of the spectral data.
The spectral data may be data indicating a spectrum of scattered light of light emitted to the liquid including the protein and the impurities. The state data may include an estimated value of a concentration of the protein included in the treatment liquid.
According to the technology of the present disclosure, there is provided a method for estimating a purified state that can estimate the concentration of impurities with high accuracy even in a case in which the amount of impurities other than a protein, which is included in a treatment liquid subjected to a protein purification treatment, is very small.
Exemplary embodiments according to the technique of the present disclosure will be described in detail based on the following figures, wherein:
Hereinafter, an example of an embodiment of the technology of the present disclosure will be described with reference to the drawings. In addition, in each of the drawings, the same or equivalent components and portions are denoted by the same reference numerals, and the repeated description thereof will be omitted as appropriate.
A method for estimating a purified state according to an embodiment of the technology of the present disclosure includes quantifying a component that is included in a treatment liquid obtained by performing a purification treatment on a liquid including a specific protein and impurities other than the protein. More specifically, the method includes acquiring an estimated value of the concentration of the impurities included in the treatment liquid on the basis of spectral data indicating the intensity of electromagnetic waves, which have been emitted to the treatment liquid and have been subjected to the action of the treatment liquid, for each wave number or wavelength. The method for estimating the purified state according to the technology of the present disclosure is particularly effective in a case in which the concentration of the impurities included in the treatment liquid is equal to or less than 20 mg/mL and a weight ratio of the impurities to a mixture including the protein and the impurities is equal to or less than 15%. In addition, the method for estimating the purified state according to the technology of the present disclosure may include acquiring an estimated value of the concentration of the specific protein included in the treatment liquid.
The specific protein may be, for example, an immunoglobulin produced from cultured cells, that is, an antibody. The impurities include, for example, an immature sugar chain having a structure similar to that of the antibody, DNA of a cell, an aggregate of the antibody, a decomposition product of the antibody, and a host cell protein (HCP). The immature sugar chain having a structure similar to that of the antibody is likely to be formed, for example, in a case in which the amount of waste products in a culture solution increases or in a case in which oxygen concentration in the culture solution is insufficient for a culture period of antibody-producing cells. The decomposition product of the antibody is formed by the decomposition of the antibody by a degrading enzyme produced for the culture period. The aggregate of the antibody is likely to be formed, for example, in a case in which the concentration of the antibody produced from the cells is excessively high or in a case in which stress, such as heat, is applied. The DNA excreted from the cell means that a cell membrane of the cell has broken down, that is, the cell has become a dead cell. The host cell protein is a host cell-derived protein that is purified together with the antibody in the process of purifying the antibody. In a case in which the above-described impurities are mixed in a medicine using the antibody produced from cells, the impurities are likely to affect the efficacy of the medicine even though the amount of impurities is very small. Therefore, it is important to quantify the impurities in the treatment liquid obtained by the purification treatment for purifying the antibody.
The purification treatment P1 using immunoaffinity chromatography is a treatment of extracting an antibody using a column in which a ligand, such as protein A having an affinity for the antibody, is immobilized on a carrier. The virus inactivation treatment P2 is a treatment of inactivating a virus included in the treatment liquid obtained by the purification treatment P1. The purification treatment P3 using cation chromatography is a treatment of extracting the antibody using a column having a cation exchanger as a stationary phase. The purification treatment P4 using anion chromatography is a treatment of extracting the antibody using a column having an anion exchanger as a stationary phase. The virus filtering treatment P5 is a treatment of removing the virus included in the treatment liquid obtained by each of the above-described treatments using a filter. The concentration and filtration treatment P6 is a concentration and filtration treatment using ultrafiltration (UF) and diafiltration (DF).
As described above, a plurality of treatments including a component separation method using a plurality of different types of chromatography are performed stepwise to eliminate the impurities stepwise and to increase the purity of the antibody stepwise. It is preferable to monitor the purified state in order to verify whether or not an appropriate treatment is performed in each step. The method for estimating the purified state according to the embodiment of the technology of the present disclosure can be used to estimate the purified state of each of the treatment liquids obtained in each of the treatments P1 to P6 illustrated in
The method for estimating the purified state according to the embodiment of the technology of the present disclosure includes constructing a soft sensor, which receives spectral data as an input and outputs state data, with machine learning using a plurality of combinations of the state data and the spectral as training data. Here, the state data indicates a purified state of a liquid that includes a specific protein and impurities and that is to be subjected to the purification treatment, and the spectral data indicates the intensity of electromagnetic waves, which have been emitted to the treatment liquid obtained by the purification treatment and have been subjected to the action of the treatment liquid, for each wave number or wavelength. The method for estimating the purified state according to the embodiment of the technology of the present disclosure includes acquiring the state data that is output from the soft sensor in a case in which the spectral data acquired for the treatment liquid obtained by the purification treatment is input to the soft sensor. The state data includes an estimated value of the concentration of the impurities included in the treatment liquid.
In addition, the method for estimating the purified state according to the embodiment of the technology of the present disclosure includes: performing preprocessing on the spectral data; and constructing the soft sensor with machine learning using, as training data, a plurality of combinations of processed data obtained by the preprocessing and the state data. Dimensional reduction methods, such as sparse modeling, principal component analysis (PCA), latent semantic analysis (singular value decomposition) (LSA (SVD)), linear discriminant analysis (LDA), independent component analysis (ICA), and partial least squares regression (PLS), are used as a preprocessing method. The preprocessing method may include a process of selecting a spectral intensity value used as the training data among the spectral intensity values for each wave number or wavelength included in the spectral data. In this case, the remaining spectral intensity values for each wave number or wavelength after the selection are the processed data. It is assumed that the spectral intensity values for each wave number or wavelength constituting the spectral data are enormous. The selection of the data used as the training data makes it possible to prevent a reduction in the accuracy of prediction caused by over-training with model data. The selection of the spectral data can be performed, for example, by sparse modeling. That is, the preprocessing performed on the spectral data may include a process of excluding data having a relatively low correlation with the state data among the spectral data, using sparse modeling, to specify high-correlation spectral data having a relatively high correlation with the state data in the spectral data as the processed data. Among the spectral intensity values for each wave number or wavelength included in the spectral data, the number of spectral intensity value which are used as the training data and selected by the preprocessing is preferably equal to or greater than 5 and less than 1000, more preferably equal to or greater than 5 and equal to or less than 800, and further preferably equal to or greater than 5 and equal to or less than 500.
In this embodiment, the sparse modeling means that explanatory variables are selected (that is, some of the explanatory variables are excluded) for a regression model which uses the spectral intensity values for each wave number or wavelength included in the spectral data as the explanatory variables and uses the state data as objective variables. For example, lasso regression can be used as a sparse modeling method. The lasso regression is a method that selects the explanatory variables such that a cost function calculated by adding a penalty term to a root mean squared error (RMSE) is minimized. In this embodiment, the explanatory variables are selected by excluding low-correlation spectral data having a relatively low correlation with the state data among the spectral data. The penalty term may be determined by, for example, cross-validation represented by K-fold cross validation. In the following description, a case in which the preprocessing performed on the spectral data is a process of specifying high-correlation spectral data will be described as an example.
The liquid including a specific protein and impurities other than the protein can be produced by a known method such as a method that cultures cells having a gene encoded with the specific protein, performs a cell removal treatment on the resulting culture, and performs the purification treatment using chromatography. For example, the liquid can be produced by culturing CHO cells, into which an IgG1 antibody gene has been introduced, performing the cell removal treatment using a filtering treatment, and performing a purification treatment using chromatography with protein A. The ratio of the specific protein to the impurities other than the protein can be changed by changing purification conditions such as the pH and temperature of the protein A. In this embodiment, an aqueous sodium acetate solution was used as a buffer solution during purification. In protein purification, a phosphate-based or acetic acid-based buffer solution is mainly used. Since the wave numbers characteristic of these buffer solutions are known, it is possible to perform prediction regardless of the buffer solution by removing the wave numbers.
The technology of the present disclosure can be applied regardless of the type of protein. The difference between antibody species is the difference between amino acid sequences. Since this difference between the amino acid sequences does not appear in a spectral difference, it can be adapted regardless of the type of antibody.
The technology of the present disclosure can be applied to immature sugar chains regardless of the type of the immature sugar chain.
The method for estimating the purified state according to the embodiment of the technology of the present disclosure includes, for example, a step of acquiring state data output from a soft sensor 20 in a case in which, among the spectral data acquired for the treatment liquid obtained by any one of a plurality of treatments illustrated in
In this embodiment, an analysis method using Raman spectroscopy is applied to the soft sensor 20. That is, spectral data of Raman scattered light is applied as the spectral data input to the soft sensor 20. The Raman spectroscopy is a spectroscopic method that evaluates a substance using the Raman scattered light. In a case in which a substance is irradiated with light, the light interacts with the substance to generate Raman scattered light having a wavelength different from that of incident light. Since a difference in wavelength between the incident light and the Raman scattered light corresponds to the molecular vibration energy of the substance, the Raman scattered light having a different wavelength (wave number) can be obtained between substances having different molecular structures. In addition, it is possible to estimate various physical properties, such as stress, temperature, electrical characteristics, orientation, and crystallinity, using the Raman scattered light. Of a Stokes line and an anti-Stokes line, the Stokes line is preferably used as the Raman scattered light. In this embodiment, Raman spectra were collected under the conditions of a laser output of 500 mW, a measurement wavelength of 785 nm, and a laser irradiation time of 1 second.
The state data output from the soft sensor 20 is data that indicates the purified state and is correlated with the spectral data. The state data includes an estimated value of the concentration of impurities included in the treatment liquid 31. The state data may include an estimated value of the concentration of an antibody included in the treatment liquid 31. It is not easy to monitor the state data in line using actual measurement. The use of the soft sensor 20 makes it possible to acquire the state data in line on the basis of the spectral data which is relatively easy to monitor in line using actual measurement.
The soft sensor 20 is constructed by machine learning using a plurality of combinations of the spectral data and the state data as the training data.
Training state data can be acquired by actually measuring the treatment liquid, from which the training spectral data has been acquired, using a sampling method according to the related art. For example, in a case in which the concentration of the impurities included in the treatment liquid is acquired as the training state data, it can be acquired by a method, such as high performance liquid chromatography (HPLC), for each type of impurities. The training data is acquired for each purification condition, and the training spectral data and the training state data under each condition are associated with each other.
Here, the analyzer 41 outputs, as the spectral data, the spectral intensity value in the range of, for example, a wave number of 500 cm−1 to 3000 cm−1 at an interval of 1 cm−1. Therefore, the number of spectral data items acquired is enormous. In a case in which all of the spectral data is used as the training data, a learning load becomes excessive, and a high-performance processor is required in order to perform machine learning. Further, in some cases, the spectral intensity values of the Raman scattered light constituting the spectral data include a spectral intensity value for a wave number having a low correlation with the state data to be monitored. For example, it is considered that the spectral intensity value for a specific wave number of the Raman scattered light has a low correlation with the concentration of the impurities. In a case in which the soft sensor 20 is constructed by machine learning using spectral data including the spectral intensity value of the wave number having a low correlation with the state data to be monitored as the training data, there is a concern that the accuracy of the output value of the soft sensor 20 will be reduced.
Therefore, in this embodiment, as the preprocessing on the spectral data, among the spectral data output from the analyzer 41, the spectral intensity value of the wave number having a relatively high correlation with the state data to be monitored is specified as the high-correlation spectral data. Then, in a learning phase which is a stage of constructing the soft sensor 20 using machine learning, the soft sensor 20 is constructed by machine learning using a plurality of combinations of the high-correlation spectral data and the state data as the training data. On the other hand, in an operation phase in which the constructed soft sensor 20 is operated to acquire state data for the treatment liquid obtained by the purification treatment, as illustrated in
The color of the treatment liquid for which the spectral data is to be acquired changes depending on, for example, the amount of impurities included in the treatment liquid, the type of the antibody, and the type of the antibody-producing cell. In addition, for example, fluctuations in the external environment, such as temperature, humidity, and vibration, in the acquisition of the spectral data, and the output of the excitation light emitted to the treatment liquid are disturbances to the spectral data. In some cases, these factors cause fluctuations in the baseline of the spectral data. The fluctuations in the baseline cause a reduction in the accuracy of the output value of the soft sensor 20. Therefore, in this embodiment, the correction of the baseline of the spectral data is further performed as the preprocessing on the spectral data. The correction of the baseline means removing the fluctuations caused by the disturbance at the baseline of the spectral data. The correction of the baseline may be performed, for example, by performing differential processing on a spectral waveform. In addition, for example, the correction of the baseline may be performed by removing a baseline calculated by polynomial fitting from the spectral waveform.
The storage unit 103 is implemented by a storage medium, such as a hard disk drive (HDD), a solid state drive (SSD), or a flash memory. The training data 50, an estimation model 60, a soft sensor construction program 70, and an estimation program 80 are stored in the storage unit 103. As illustrated in
In the learning phase, the CPU 101 reads the soft sensor construction program 70 from the storage unit 103, expands the soft sensor construction program 70 in the memory 102, and executes the soft sensor construction program 70. In the operation phase, the CPU 101 reads the estimation program 80 from the storage unit 103, expands the estimation program 80 in the memory 102, and executes the estimation program 80. In addition, a server computer is given as an example of the information processing device 10. The CPU 101 is an example of a processor according to the technology of the present disclosure.
The specification unit 11 performs regression analysis on the training data 50, using lasso regression which is an example of the sparse modeling, to specify the spectral intensity value of the wave number having a relatively high correlation with the state data as the high-correlation spectral data among the spectral data included in the training data 50. Specifically, the specification unit 11 performs the following process. The specification unit 11 performs a process of thinning out the spectral intensity value of the wave number, which has been determined randomly, on the spectral data included in the training data 50 and generates a regression model (regression expression) indicating the relationship between the thinned-out spectral data and the corresponding state data. The specification unit 11 derives a cost function obtained by adding a penalty term to a root mean squared error (RMSE) for the generated regression model. The specification unit 11 repeatedly performs each of the above-mentioned processes a predetermined number of times to generate the regression model for each of a plurality of spectral data items having different wave numbers to be thinned out and to derive the above-mentioned cost function for each regression model. The specification unit 11 specifies the smallest number of spectral intensity values that can minimize the above-mentioned cost function as the high-correlation spectral data in a predetermined number of repeated calculation operations.
The learning unit 12 trains the estimation model 60 with machine learning using a combination of the high-correlation spectral data specified by the specification unit 11 and the corresponding state data in the training data 50 as teacher data. Therefore, the soft sensor 20 that receives the high-correlation spectral data as an input and outputs the state data is constructed.
The learning unit 12 trains the estimation model 60 using the training data 50 according to a back-propagation method which is an example of machine learning. Specifically, the learning unit 12 extracts the high-correlation spectral data specified by the specification unit 11 from the training spectral data included in the training data 50. The learning unit 12 inputs the extracted high-correlation spectral data to the estimation model 60 and acquires the state data output from the estimation model 60. The learning unit 12 trains the estimation model 60 such that a difference between a score indicated by the acquired state data and a score indicated by the training state data corresponding to the high-correlation spectral data included in the training data 50 is minimized. The learning unit 12 performs a process of training the estimation model 60 using a combination of all or some of the high-correlation spectral data and the state data included in the training data 50. Further, in addition to the back-propagation method, random forest, linear regression, non-linear regression (Sapport vector machine (SVM) and Basian regression), logistic regression, and the like are given as examples of the machine learning method. However, the back-propagation method is preferable.
In Step S1, the specification unit 11 randomly selects the spectral intensity value of the wave number to be excluded from the spectral data included in the training data 50 stored in the storage unit 103. That is, the specification unit 11 performs a process of thinning out the spectral intensity values for some wave numbers among the spectral intensity values acquired at a wave number interval of 1 cm'. The number of wave numbers to be excluded may be predetermined or randomly determined. It is preferable that a predetermined number of wave numbers are excluded.
In Step S2, the specification unit 11 generates a regression model (regression expression) indicating the relationship between spectral data (that is, thinned-out spectral data) composed of the spectral intensity values of wave numbers other than the wave numbers to be excluded, which have been selected in Step S1, and the corresponding state data. Specifically, a regression model that uses the thinned-out spectral data as an explanatory variable and uses the corresponding state data as an objective variable is estimated by a statistical method. The regression model may be a linear model or a non-linear model.
In Step S3, the specification unit 11 derives a cost function for the regression model generated in Step S2. The cost function is used as an index value indicating the accuracy of the regression model.
In Step S4, the specification unit 11 determines whether or not the number of repetitions of the processes from Step S1 to Step S3 has reached a predetermined number of times. The specification unit 11 repeatedly performs the processes from Step S1 to Step S3 until the number of repetitions reaches a predetermined number of times. Therefore, the regression model is generated for each of a plurality of thinned-out spectral data items having different wave numbers to be excluded, and the cost function is derived for each of the generated regression models.
In Step S5, the specification unit 11 specifies the thinned-out spectral data used to generate the regression model having the minimum cost function as the high-correlation spectral data. The spectral data used to generate the regression model having the minimum cost function is composed of the spectral intensity value of the wave number having a relatively high correlation with the state data. In this way, the specification unit 11 specifies the spectral data composed of the spectral intensity values of the wave numbers having a relatively high correlation with the state data as the high-correlation spectral data, using the regression analysis.
In Step S6, the learning unit 12 extracts the high-correlation spectral data specified in Step S5 from the spectral data included in the training data 50 stored in the storage unit 103 and trains the estimation model 60 with machine learning using a plurality of combinations of the extracted high-correlation spectral data and the corresponding state data as the teacher data. Specifically, the learning unit 12 inputs the high-correlation spectral data specified in Step S5 to the estimation model 60 and trains the estimation model 60 such that the difference between the score indicated by the state data output from the estimation model 60 and the score indicated by the training state data corresponding to the high-correlation spectral data included in the training data 50 is minimized. In this way, the soft sensor 20 is constructed.
The soft sensor 20 is constructed for each type of state data to be monitored. For example, in a case in which the estimated value of the concentration of the impurities included in the treatment liquid obtained by the purification treatment is output as the state data from the soft sensor 20, a spectral intensity value of a wave number having a high correlation with the concentration of the impurities among the spectral data is specified as the high-correlation spectral data. Then, the soft sensor 20 that outputs the estimated value of the concentration of the impurities on the basis of the high-correlation spectral data is constructed by machine learning using a plurality of combinations of the specified high-correlation spectral data and the state data indicating the concentration of the impurities acquired by actual measurement as the training data. Meanwhile, in a case in which the estimated value of the concentration of the antibody is output as the state data from the soft sensor 20, the spectral intensity value of the wave number having a high correlation with the concentration of the antibody among the spectral data is specified as the high-correlation spectral data. Then, the soft sensor 20 that outputs the estimated value of the concentration of the antibody on the basis of the high-correlation spectral data is constructed by machine learning using a plurality of combinations of the specified high-correlation spectral data and the state data indicating the concentration of the antibody acquired by actual measurement as the training data.
The method for estimating the purified state according to the embodiment of the technology of the present disclosure is applied, for example, to a case in which a component of the treatment liquid obtained by the purification treatment for extracting the antibody is quantified. As illustrated in
The acquisition unit 13 acquires the spectral data output from the analyzer 41. The extraction unit 14 extracts the high-correlation spectral data specified by the specification unit 11, that is, the spectral intensity value of the wave number having a relatively high correlation with the state data to be monitored, among the spectral data acquired by the acquisition unit 13.
The estimation unit 15 reads the trained estimation model 60 functioning as the soft sensor 20 from the storage unit 103, inputs the high-correlation spectral data extracted by the extraction unit 14 to the estimation model 60, and acquires the state data output from the estimation model 60. The estimation unit 15 may perform control to display the acquired state data on the display unit 104. Further, the estimation unit 15 may store the acquired state data in the storage unit 103.
In Step S11, the acquisition unit 13 acquires the spectral data output from the analyzer 41. In Step S12, the extraction unit 14 extracts the high-correlation spectral data specified by the specification unit 11, that is, the spectral intensity value of the wave number having a relatively high correlation with the state data to be monitored, among the spectral data acquired by the acquisition unit 13. In Step S13, the estimation unit 15 reads the trained estimation model 60 functioning as the soft sensor 20 from the storage unit 103, inputs the high-correlation spectral data extracted in Step S12 to the read estimation model 60, and acquires the state data output from the estimation model 60. The estimation unit 15 performs control to display the acquired state data on the display unit 104.
The estimated value of the concentration of the impurities included in the treatment liquid obtained by performing the purification treatment on the liquid including the antibody and the impurities was acquired by the soft sensor 20. Each of
A protein and impurities which are included in a liquid including the protein and the impurities other than the protein and a protein having an immature sugar chain can be actually measured by a known method. For example, the protein can be measured by subjecting the liquid to protein A chromatography. The impurities can be measured by performing a size exclusion chromatography treatment. A sugar chain liberation treatment can be performed on the immature sugar chain, the liberated sugar chain can be fluorescently labeled, an unreacted substance can be removed, and the concentration of the immature sugar chain can be measured by HPLC.
R
C
=C/(A+C) (1)
The following Table 1 shows the results of calculating a determination coefficient (R2) indicating the degree of match of each of the estimated value according to Example and the estimated value according to the comparative example with the measured value and a root mean squared error (RMSE) indicating the degree of deviation of each of the estimated values from the measured value.
As illustrated in
The estimated value of the concentration of the antibody included in the treatment liquid obtained by performing the purification treatment on the liquid including the antibody and the impurities was acquired by the soft sensor 20. Each of
R
A
=A/(A+C) (2)
The following Table 2 shows the results of calculating a determination coefficient (R2) indicating the degree of match of each of the estimated value according to Example and the estimated value according to the comparative example with the measured value and a root mean squared error (RMSE) indicating the degree of deviation of each of the estimated values from the measured value.
As illustrated in
An estimated value of the concentration of an immature sugar chain, which is a kind of impurities included in a treatment liquid obtained by performing the purification treatment on a liquid including an antibody and impurities was acquired by the soft sensor 20.
The following Table 3 illustrates the results of calculating a determination coefficient (R2) indicating the degree of match of each of the estimated value according to Example 1 and the estimated value according to Example 2 with the measured value and a root mean squared error (RMSE) indicating the degree of deviation of each of the estimated values from the measured value.
As illustrated in
As described above, according to the method for estimating the purified state according to the embodiment of the technology of the present disclosure, even in a case in which the amount of impurities other than the protein included in the treatment liquid, which has been subjected to the purification treatment for extracting a specific protein, is very small, it is possible to estimate the concentration of the impurities with high accuracy. For example, even in a case in which the concentration of the impurities included in the treatment liquid is equal to or less than 20 mg/mL and the ratio of the impurities is equal to or less than 15%, it is possible to estimate the concentration of the impurities with high accuracy.
In addition, since the in-line monitoring of the spectral data by actual measurement is relatively easy, it is possible to estimate the purified state in line. Further, it is possible to immediately acquire the estimation result of the purified state. Therefore, for example, the technology of the present disclosure can be applied to the purification treatment in the manufacture of medicines, which makes it possible to immediately (for example, within 10 seconds) respond to a case in which some abnormality occurs during the purification treatment. Furthermore, the technology of the present disclosure can be applied in the stage of process development in which the purification treatment conditions are examined, which makes it possible to evaluate the validity of the purification conditions in a short time.
Further, among the spectral data output from the analyzer 41, the high-correlation spectral data composed of the spectral intensity value of the wave number having a relatively high correlation with the state data to be monitored is used as the training data. Therefore, a learning load can be less than that in a case in which all of the spectral data output from the analyzer 41 is used as the training data. In addition, it is possible to improve the accuracy of the output value of the soft sensor 20.
In a case in which impurities are mixed in a medicine using the antibody produced from cells, the impurities are likely to affect the efficacy of the medicine even though the amount of impurities is very small. According to the method for estimating the purified state according to the embodiment of the technology of the present disclosure, it is possible to acquire the estimated value of the concentration of impurities. Therefore, the technology of the present disclosure can be applied to the purification treatment performed in the process of manufacturing medicines, which makes it possible to ensure the quality of the medicines.
Further, in this embodiment, the aspect in which the spectrum of Raman scattered light is used as the spectral data has been described as an example. However, the present disclosure is not limited to this aspect. For example, the absorption spectrum of infrared rays emitted to the treatment liquid subjected to the purification treatment may be used as the spectral data. In addition, a nuclear magnetic resonance spectrum may be used as the spectral data. It is preferable to use the spectrum of the Raman scattered light as the spectral data.
Further, in this embodiment, a case in which preprocessing is performed on the spectral data and the soft sensor is constructed by machine learning using a plurality of combinations of the processed data obtained by the preprocessing and the state data as the training data has been described as an example. However, in a case in which a reduction in the accuracy of the estimation model caused by the learning load and over-training does not cause a problem, spectral data that has not been subjected to the preprocessing may be used as the training data.
Furthermore, in this embodiment, a process for specifying the high-correlation spectral data having a relatively high correlation with the state data among the spectral data has been described as an example of the preprocessing. However, the present disclosure is not limited thereto. For example, a process that excludes the spectral intensity value of a predetermined wave number among the spectral data acquired by the analyzer 41 from the training data may be performed as the preprocessing. In addition, a process that groups the spectral data acquired by the analyzer 41 such that wave numbers close to each other belong to the same wave number group and calculates, for example, the average value, standard deviation, median value, maximum value, and minimum value of the intensity of scattered light for each wave number group may be performed as the preprocessing. In this case, the spectral intensity value for each wave number group is used as the training data. Further, a process that reduces the number of dimensions for the training data composed of a plurality of combinations of the spectral data indicating intensity for each wave number or each wavelength and the state data may be performed as the preprocessing.
An example of the utilization of the method for estimating the purified state according to the embodiment of the technology of the present disclosure will be described below. For example, in affinity chromatography and cation chromatography included in a step of manufacturing an antibody product or the like, the amount of a specific component adsorbed to a column is calculated in advance, and then a predetermined amount of liquid to be treated is introduced into the column. The method according to this embodiment is applied to the treatment liquid obtained by the purification treatment to estimate the amount of specific component. In a case in which the specific component is not adsorbed to the column and flows out of the column, it is possible to immediately detect this situation and to respond to this situation. For example, it is possible to reduce the introduction amount of the liquid to be treated into the column or to stop the introduction of the liquid to be treated into the column.
In addition, in the affinity chromatography and the cation exchange chromatography, impurities may be adsorbed to the column due to functional deterioration of the column, and the treatment liquid eluted from the column may not include the impurities or the amount of impurities may be less than usual. The method according to this embodiment can be applied to the treatment liquid eluted from the column to estimate the amount of impurities, which makes it possible to immediately detect this situation and to respond to this situation. For example, it is possible to replace the column.
In addition, in the cation exchange chromatography, a specific component is eluted from the column by applying a gradient at a salt concentration. The method according to this embodiment may be applied to the treatment liquid eluted from the column to estimate the amount of a specific component, and a gradient curve may be controlled according to the concentration of the specific component.
Furthermore, in the above-described embodiment, for example, the following various processors can be used as a hardware structure of processing units performing various processes such as the specification unit 11, the learning unit 12, the acquisition unit 13, the extraction unit 14, and the estimation unit 15. The various processors include, for example, a CPU which is a general-purpose processor executing software (program) to function as various processing units, a programmable logic device (PLD), such as a field programmable gate array (FPGA), which is a processor whose circuit configuration can be changed after manufacture, and a dedicated electric circuit, such as an application specific integrated circuit (ASIC), which is a processor having a dedicated circuit configuration designed to perform a specific process.
One processing unit may be configured by one of the various processors or a combination of two or more processors of the same type or different types (for example, a combination of a plurality of FPGAs or a combination of a CPU and an FPGA). In addition, a plurality of processing units may be configured by one processor.
A first example of the configuration in which a plurality of processing units are configured by one processor is an aspect in which one processor is configured by a combination of one or more CPUs and software and functions as a plurality of processing units. A representative example of this aspect is a client computer or a server computer. A second example of the configuration is an aspect in which a processor that implements the functions of the entire system including a plurality of processing units using one integrated circuit (IC) chip is used. A representative example of this aspect is a system on chip (SoC). As described above, various processing units are configured by using one or more of the various processors as a hardware structure. In addition, specifically, an electric circuit (circuitry) obtained by combining circuit elements, such as semiconductor elements, can be used as the hardware structure of the various processors.
Further, in the above-described embodiment, the aspect in which the soft sensor construction program 70 and the estimation program 80 are stored (installed) in the storage unit 103 in advance has been described. However, the present disclosure is not limited thereto. The soft sensor construction program 70 and the estimation program 80 may be recorded on a recording medium, such as a compact disc read only memory (CD-ROM), a digital versatile disc read only memory (DVD-ROM), or a universal serial bus (USB) memory, and then provided. Further, the soft sensor construction program 70 and the estimation program 80 may be downloaded from an external device through a network.
In addition, the disclosure of JP2021-057497 filed on Mar. 30, 2021 is incorporated herein by reference in its entirety. Further, all documents, patent applications, and technical standards described in the specification are incorporated herein by references to the same extent as the incorporation of the individual documents, patent applications, and technical standards by references are described specifically and individually.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2021-057497 | Mar 2021 | JP | national |
This application is a continuation application of International Application No. PCT/JP2022/007006, filed Feb. 21, 2022, the disclosure of which is incorporated herein by reference in its entirety. Further, this application claims priority from Japanese Patent Application No. 2021-057497 filed on Mar. 30, 2021, the disclosures of which is incorporated herein by reference in its entirety.
| Number | Date | Country | |
|---|---|---|---|
| Parent | PCT/JP2022/007006 | Feb 2022 | US |
| Child | 18474596 | US |
