METHOD FOR MONITORING OR PREDICTING WHETHER A PATIENT SUFFERING FROM OBESITY IS RESPONDING OR WILL RESPOND TO A VERY-LOW-CALORIE KETOGENIC DIET (VLCKD)

Abstract
The present invention refers to an in vitro method for screening and/or selecting genes whose methylation status indicates whether a patient suffering from obesity is responding or will respond to a treatment with VLCKD. Moreover, the present invention refers to an in vitro method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD.
Description
FIELD OF THE INVENTION

The present invention refers to the medical field. Particularly, the present invention refers to an in vitro method for screening and/or selecting genes whose methylation status indicates whether a patient suffering from obesity is responding or will respond to a treatment with a very-low-calorie ketogenic diet (VLCKD). Moreover, the present invention refers to an in vitro method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD.


STATE OF THE ART

Ketosis has gained interest over recent years due to its induced benefits that it imparts on several health conditions. Ketosis is associated with a delay in the onset of diseases and increased longevity. Similarly, ketosis is suggested to have an extensive range of health benefits, from increased physical endurance in athletes to delayed aging. Also, to improve conditions such as neurodegenerative disease cancer, cardiovascular disease, and obesity. Some of these studies involved high fat ketogenic diets and even though the main characteristic of ketogenic diets is the carbohydrates restriction, the specific composition in macronutrients and calories should be taken into consideration for the impact in clinical practice.


VLCKD was demonstrated to be an effective strategy in managing obesity, including weight loss and maintenance, increased preservation of muscle mass, and enhanced resting metabolic rate. Moreover, it can improve metabolic parameters in patients with obesity and type 2 diabetes. Additionally, it was demonstrated that VLCKD can reduce food craving and improve psychobiological parameters to help improve quality of life in patients with obesity. However, the molecular mechanisms underlying these benefits of ketogenic diet remain unknown.


So, there is an unmet medical need of finding a molecular method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD, particularly whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with VLCKD. The present invention aims to solve this need and an evaluation regarding how VLCKD might affect the obesity methylome is herein provided. Obesity-related methylome changes have been identified in the present invention, which are mediated by the induced weight loss or ketosis by means of treatment with VLCKD. Said methylome changes are thus herein proposed as an indication of whether a patient suffering from obesity is responding or will respond to a treatment with VLCKD.


DESCRIPTION OF THE INVENTION
Brief Description of the Invention

The present invention refers to a method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD, particularly for monitoring or predicting whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with VLCKD.


Particularly, twenty-one patients with obesity (n=12 women, 47.9±1.02 yr, 33.0±0.2 kg/m2) after 6 months on a VLCKD and 12 normal weight volunteers (n=6 women, 50.3±6.2 yrs, 22.7±1.5 kg/m2) were studied. Data from the Infinium MethylationEPIC BeadChip methylomes of blood leukocytes were obtained at time points of ketotic phases (basal, maximum ketosis, and out of ketosis) during VLCKD (n=10) and at baseline in volunteers (n=12). Results were further validated by pyrosequencing in representative cohort of patients on a VLCKD (n=18) and correlated with gene expression.


After weight reduction by VLCKD, differences were found at 988 CpG sites (786 unique genes). The VLCKD altered methylation levels in patients with obesity had high resemblance with those from normal weight volunteers and was concomitant with a downregulation of DNA methyltransferases (DNMT)1, 3a and 3b. Most of the encoded genes were involved in metabolic processes, protein metabolism, and muscle, organ, and skeletal system development. Novel genes representing the top scoring associated events were identified, including ZNF331, FGFRL1 (VLCKD-induced weight loss) and CBFA2T3, C3orf38, JSRP1, and LRFN4 (VLCKD-induced ketosis). Interestingly, ZNF331 and FGFRL1 were validated in an independent cohort and inversely correlated with gene expression.


So, the present invention is making a clear contribution as compared to the prior art, since the molecular mechanisms underlying the potential health benefits of a ketogenic diet are still unknown. So, the present invention is showing for the first time that the methylome status indicates whether a patient suffering from obesity is responding or will respond to a treatment with a VLCKD, particularly whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with VLCKD.


Consequently, the special technical feature that defines a contribution over the prior art and confers unity to the present invention is that the methylation status indicates whether a patient suffering from obesity is responding or will respond to a treatment with a VLCKD, particularly whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with VLCKD.


So, the first embodiment of the present invention refers to an in vitro method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to a treatment with VLCKD, which comprises determining the methylation status of at least a gene or CpG selected from Table S2, S3 or S4, wherein a statistically significant variation or deviation of level of methylation, as compared with a pre-established level of methylation, is an indication that the subject is responding or will respond to a VLCKD.


In a preferred embodiment, the present invention comprises screening and/or selecting genes whose methylation status indicates whether a patient suffering from obesity is responding or will respond to a treatment with a VLCKD, by following these steps:

    • a. Selecting those CpGs characterized by being differentially methylated, showing a differential β value≥2% and FDR<0.10 between patients who are in the period of maximum ketosis that occurs between days 30 and 90 of the diet and the patients who are at the end of the diet that occurs between days 120 and 180, with respect to a control value represented by the level of methylation in patients who are in baseline state that occurs at the beginning of the diet; and/or
    • b. Selecting those CpGs characterized by being differentially methylated, showing a differential β value≥2% and FDR<0.10 between patients who are in the period of maximum ketosis that occurs between days 30 and 90 of the diet, with respect to a control value represented by the level of methylation in patients who are in baseline state that occurs at the beginning of the diet, and discarding those CpGs that are differentially methylated between the patients who are in the period of maximum ketosis that occurs between days 30 and 90 of the diet and the patients who are at the end of the diet that occurs between days 120 and 180; and
    • c. Selecting those genes comprising in the promoter region at least two of the differentially methylated CpG sites which have been selected according to the steps a) and/or b).


In a preferred embodiment, the genes and CpG sites which are selected according to the steps a) and c) are comprised in Table 2 or Table S2 and their methylation status indicates whether a patient suffering from obesity is responding or will respond to VLCKD giving rise to both weight loss and nutritional ketosis induction, and/or the genes and CpG sites which are selected according to the steps b) and c) are comprised in Table 3 or Table S3 and their methylation status indicates whether a patient suffering from obesity is responding or will respond to VLCKD due to the induction of nutritional ketosis.


In a preferred embodiment, the present invention refers to a method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD giving rise to both weight loss and nutritional ketosis induction, which comprises determining the methylation status of at least a gene selected from Table 2 or Table S2, wherein a statistically significant variation or deviation of level of methylation, as compared with a pre-established level of methylation, is an indication that the subject is responding or will respond to a VLCKD.


In a preferred embodiment, the methylation status of the genes is determined in at least a CpG site selected from Table 2 or Table S2.


In a preferred embodiment, the present invention refers to a method for monitoring or predicting whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with a VLCKD, which comprises determining the methylation status of at least a gene selected from Table 3 or Table S3 in a biological sample obtained from the patient, wherein a statistically significant variation or deviation of level of methylation, as compared with a pre-established level of methylation, is an indication that ketosis reduction has occurred.


In a preferred embodiment, the methylation status of the genes is determined in at least a CpG site selected from Table 3 or Table S3.


In a preferred embodiment, an overall hypomethylation of the genes is observed when the patient is responding or will respond to the treatment with a VLCKD.


In a preferred embodiment, the methylation status detection is conducted by means of a technique selected from the group consisting of: methylation specific PCR, bisulfite sequencing, techniques based on restriction-digestion, pyrosequencing, assay ChIP-on-chip, differential conversion, differential restriction and/or differential weight of site(s) methylated.


In a preferred embodiment, the biological sample isolated from the patient is whole blood, preferably blood leucocytes.


The second embodiment of the present invention refers to the in vitro use of the methylation status of at least a gene selected from Table S2, S3 or S4 for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD.


In a preferred embodiment, the present invention refers to the in vitro use of the methylation status of at least a gene selected from Table 2 or Table S2 for monitoring or predicting whether a patient suffering from obesity is responding or will respond to VLCKD giving rise to both weight loss and nutritional ketosis induction.


In a preferred embodiment, the present invention refers to the in vitro use of the methylation status of at least a CpG site selected from Table 2 or Table S2.


In a preferred embodiment, the present invention refers to the in vitro use of the methylation status of at least a gene selected from Table 3 or Table S3 for monitoring or predicting whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with a VLCKD.


In a preferred embodiment, the present invention refers to the in vitro use of the methylation status of at least a CpG site selected from Table 3 or Table S3.


On the other hand, the present invention also refers to a method for detecting hypermethylation or hypomethylation in at least a gene selected from Tables 2, S2, 3, S3 or S4 which comprises: a) obtaining DNA from the subject, b) detecting a hypermethylation or hypomethylation in CpG sites selected from Tables 2, S2, 3, S3 or S4, wherein said (b) detecting is conducted by a technique selected from the group consisting of methylation specific PCR, bisulphite sequencing, techniques based on restriction-digestion, pyrosequencing, assay ChIP-on-chip, differential conversion, differential restriction and differential weight of site(s) methylated.


The present invention also refers to a computer-implemented invention, wherein a processing unit (hardware) and a software are configured to: Receive methylation level values of any of the genes selected from Tables 2, S2, 3, S3 or S4; process the methylation level values received for finding substantial variations or deviations; and provide an output through a terminal regarding the variation or deviation of the methylation level, wherein the variation or deviation of the methylation level indicates whether a patient suffering from obesity is responding or will respond to a treatment with a VLCKD, particularly whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with VLCKD.


The last embodiment of the present invention refers to a method for treating a patient suffering from obesity with VLCKD, wherein the method comprises a first step of predicting whether the patient will respond to VLCKD by determining the methylation status of a least a gene selected from Table 2, S2, 3, S3 or S4, according to the method herein described.


For the purpose of the present invention the following abbreviation list is included:

    • ACACB, Acetyl-CoA Carboxylase Beta.
    • AEBP1, AE binding protein 1.
    • ANOVA, analysis of variance.
    • BMI, body mass index.
    • C3orf38, chromosome 3 open reading frame 38.
    • CACNA1H, Calcium Voltage-Gated Channel Subunit Alpha1 H.
    • CAMKK1, Calcium/Calmodulin Dependent Protein Kinase Kinase 1.
    • CBFA2T3, CBFA2/RUNX1 Partner Transcriptional Co-Repressor 3.
    • cDNA, complementary DNA.
    • CENPF, Centromere Protein F.
    • CHAT, choline O-acetyltransferase.
    • CHUK, Component Of Inhibitor Of Nuclear Factor Kappa B Kinase Complex.
    • COL1A1, collagen, type I, alpha 1.
    • COL5A1, collagen type V alpha 1 chain.
    • COL9A2, collagen, type IX, alpha 2.
    • CV, coefficient of variation.
    • DMCpGs, differentially methylated CpGs.
    • DNMTs, DNA methyltransferases.
    • DNA, deoxyribonucleic acid.
    • EWAS, epigenome-wide association study.
    • FDR, false discovery rate.
    • FF, fresh-frozen.
    • FGFRL1, Fibroblast growth factor receptor (FGFR)-like protein 1.
    • GAPDH, Glyceraldehyde-3-Phosphate Dehydrogenase.
    • GO, gene ontology.
    • HRAS, HRas proto-oncogene, GTPase.
    • INSR, insulin receptor.
    • JSRP1, Junctional Sarcoplasmic Reticulum Protein 1.
    • LAMA2, Laminin Subunit Alpha 2.
    • LRFN4, Leucine Rich Repeat And Fibronectin Type III Domain Containing 4.
    • MKNK2, MAPK Interacting Serine/Threonine Kinase 2.
    • PRKAG2, Protein Kinase AMP-Activated Non-Catalytic Subunit Gamma 2.
    • PRKCZ, Protein Kinase C Zeta.
    • qRT-PCR, Real-time quantitative polymerase chain reaction.
    • RELA, v-rel reticuloendotheliosis viral oncogene homolog A.
    • RNA, Ribonucleic acid.
    • RPTOR, Regulatory Associated Protein Of MTOR Complex 1
    • SD, standard deviation.
    • SEM, standard error of the mean.
    • SGCB, Beta-sarcoglycan.
    • SMTN, Smoothelin.
    • TRAF2, TNF Receptor Associated Factor 2.
    • TSC2, Tuberous Sclerosis Complex 2.
    • TSS 200, transcription start sites 200
    • VLCKD, very-low-calorie ketogenic diet
    • WC, Waist circumference.
    • ZFHX3, zinc finger Homeobox 3.
    • ZNF331, zinc finger protein 331.
    • β-OHB, beta-hydroxy-butyrate.


Detailed Description of the Invention

For the purpose of the present invention the following terms are defined:

    • The terms “pre-established threshold level” or “control level” refer to the methylation level measured in patients suffering from obesity, before being treated with VLCKD. Typically, this level can be determined experimentally, empirically, or theoretically. This value can also be arbitrarily selected based upon the existing experimental and/or clinical conditions, as would be recognized by a person of ordinary skilled in the art.
    • As used herein, the term “methylation” will be understood to mean the presence of a methyl group added by the action of a DNA methyl transferase enzyme to a cytosine base or bases in a region of nucleic acid e.g. genomic DNA.
    • Accordingly, the term, “methylation status” as used herein refers to the presence or absence of methylation in a specific nucleic acid region e.g., genomic region.
    • The expression “higher” or “lower” level of methylation refers to an increase or decrease in the relative amount of methylation of a nucleic acid e.g., genomic DNA, as compared with the patient used as control
    • As used herein, a “CpG dinucleotide”, “CpG methylation site” or equivalent, shall be taken to denote a cytosine linked to a guanine by a phosphodiester bond. CpG dinucleotides are targets for methylation of the cytosine residue and may reside within coding or non-coding nucleic acids. Non-coding nucleic acids are understood in the art to include introns, 5′-untranslated regions, 3′ untranslated regions, promoter regions of a genomic gene, or intergenic regions.
    • The term “comprising” means including, but not limited to, whatever follows the word “comprising”. Thus, use of the term “comprising” indicates that the listed elements are required or mandatory, but that other elements are optional and may or may not be present.
    • The term “consisting of” means including, and limited to, whatever follows the phrase “consisting of”. Thus, the phrase “consisting of” indicates that the listed elements are required or mandatory, and that no other elements may be present.
    • The “β value” refers to the methylation level of each cytosine, which is calculated as the fluorescence intensity ratio of the methylated to the unmethylated version of the probe. β values ranged between 0 (unmethylated) and 1 (completely methylated) according to the combination of the Cy3 and Cy5 fluorescence intensities [Pan Du et al., 2010. Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. Comparative Study. BMC Bioinformatics. 2010 Nov. 30; 11:587. doi: 10.1186/1471-2105-11-587. PMID: 21118553 PMCID: PMC3012676 DOI: 10.1186/1471-2105-11-587].
    • “FDR” refers to false discovery rate. It is a statistical approach used in multiple hypothesis testing to correct for multiple comparisons. It is typically used in high-throughput experiments in order to correct for random events that falsely appear significant. When testing a null hypothesis to determine whether an observed score is statistically significant, a measure of confidence, the p-value, is calculated and compared to a confidence threshold a. When k hypotheses are tested simultaneously with a confidence level α, the chances of occurrence of false positives (i.e., rejecting the null hypothesis when in fact it is true) is equal to 1−(1−α)k, which can lead to a high error rate in the experiment. Therefore, a multiple testing correction, such as the FDR, is needed to adjust our statistical confidence measures based on the number of tests performed.
    • The expression “differentially methylated” refers to the existence of different DNA methylation status across different biological samples and regarded as possible functional regions involved in gene transcriptional regulation. The biological samples can be different cells/tissues within the same individual, the same cell/tissue at different times, cells/tissues from different individuals, even different alleles in the same cell.
    • “Very-low-calorie ketogenic diet” (VLCKD) is a term which pertains to the common general knowledge, and it is characterized by low fat consumption, preferably by the consumption of less than 800Kcal/day [Marco Castellana et al., 2020. Efficacy and safety of very low calorie ketogenic diet (VLCKD) in patients with overweight and obesity: A systematic review and meta-analysis. Rev Endocr Metab Disord. 2020 Mar;21(1):5-16. doi: 10.1007/s11154-019-09514-y].





DESCRIPTION OF THE FIGURES


FIG. 1. Profile of DNA methylation following the VLCKD (n=10; Discovery cohort). (A). Global differences in methylation levels of 988 DMCpGs identified by Infinium MethylationEPIC BeadChip analysis. (B). Global differences in methylation levels of DMCpGs located in the promoter and island/shore. (C). Expression levels of DNA methyltransferase (DNMT) 1 and the de novo methyltransferases DNMT3A and DNMT3B (D). Supervised clustering of the 988 CpGs that were found to be differentially methylated between patients with obesity and healthy volunteers with normal weight (n=12) groups. The identified CpG sites mapped to 786 unique genes. Differences statistically significant detected (P<0.0001). DMCpGs, differentially methylated CpGs; VLCKD, very-low calorie ketogenic diet.



FIG. 2. Characterization of the DMCpGs after VLCKD in the discovery cohort (n=10). (A) Genomic distribution of the DMCpGs and their respective locations regarding the broader CpG context, (B) gene region and (C) chromosome. (D) Genomic distribution of DMCpGs comparing those that exhibited an increase with those that exhibited a decrease in methylation levels following VLCKD, and their respective locations in the broader CpG context, (E) the gene region and (F) chromosome. DMCpGs, differentially methylated CpGs; VLCKD, very-low calorie ketogenic diet.



FIG. 3. Biological implications of the DMCpGs following a VLCKD. (A) Summary of the GO analysis of the biological process categories representing the differentially methylated genes associated with DMCpG sites. (B) Gene-protein interaction network-STRING analysis. Most of the genes regulated by methylation belonged to a network significantly enriched in protein interactions (p<0.001) according to STRING analysis. DMCpGs, differentially methylated CpGs; GO, gene ontology; VLCKD, very-low calorie ketogenic diet.



FIG. 4. Genes with known functions that present DMCpGs following a VLCKD. (A) Novel genes epigenetically regulated following VLCKD belonged to the insulin signaling pathway, (B) adipocytokine signaling pathway, (C) protein digestion and absorption functions, and (D) muscle organ development functions. DNA methylation values are expressed as b-values from the Infinium MethylationEPIC BeadChip. *Denotes differences statistically significant (P<0.05). DMCpGs, differentially methylated CpGs; VLCKD, very-low calorie ketogenic diet.



FIG. 5. Characterization of the DMCpGs during ketosis induced by a VLCKD from the discovery cohort (n=10). (A) Genomic distribution of the DMCpGs and their respective locations regarding the broader CpG context, (B) gene region and (C) chromosome. (D) Genomic distribution of DMCpGs comparing those that exhibited an increase with those that exhibited a decrease in methylation levels during the VLCKD-induced ketosis and their respective locations in the broader CpG context, (E) the gene region and (F) chromosome. DMCpGs, differentially methylated CpGs; VLCKD, very-low calorie ketogenic diet.



FIG. 6. Biological implications of the DMCpGs related to VLCKD-induced ketosis. (A) Venn diagram of the DMCpGs detected between baseline and maximum ketosis, between baseline and endpoint, and between maximum ketosis and endpoint. From this analysis, 1239 CpGs were identified as nutritional ketosis-related DMCpGs. (B) Summary of the GO analysis of the biological process categories representing the differentially methylated genes associated with nutritional ketosis-related DMCpG sites. DMCpGs, differentially methylated CpGs; GO, gene ontology; VLCKD, very-low calorie ketogenic diet.



FIG. 7. DNA methylation of ZNF331 and FGFRL1 is inversely associated with gene expression. DNA methylation differences for ZNF331 (A) and FGFRL1 (B) after VLCKD in the validation cohort (n=18) as measured by pyrosequencing. Differential gene expression of ZNF331 (C) and FGFRL1 (D) after VLCKD in the validation cohort (n=18). *Denotes differences statistically significant (*P<0.05, **P<0.01, ***P<0.001). VLCKD, very-low calorie ketogenic diet.





DETAILED DESCRIPTION OF THE INVENTION
Example 1. Materials and Methods
Example 1.1 Patient Cohort

The DNA and RNA for methylation and gene expression assays were isolated from blood samples of patients from a 6-month nutritional intervention study performed at the Endocrinology and Nutrition Department of the Hospital Clinico, Universitario of Valladolid; the patients were receiving treatment for obesity. In addition, samples from a group of healthy volunteers were also analyzed. The inclusion criteria were age between 18 to 65 years, body mass index (BMI)≥30 kg/m2, stable body weight over the previous 3 months, a desire to lose weight, and a history of failed dietary efforts. The main exclusion criteria were thyroid alteration, diabetes mellitus, obesity induced by other endocrine disorders or drugs, and participation in any active weight-loss program in the previous 3 months. In addition, patients with previous bariatric surgery, reported or suspected abuse of narcotics or alcohol, severe depression or any other psychiatric disease, severe hepatic insufficiency, any type of renal insufficiency or gout episodes, nephrolithiasis, neoplasia, previous instances of cardiovascular or cerebrovascular disease, uncontrolled hypertension, orthostatic hypotension, and hydroelectrolytic or electrocardiographic alterations were excluded. Females who were pregnant, breastfeeding, or intending to become pregnant and those with child-bearing potential who were not using adequate contraceptive methods were also excluded. Apart from obesity and metabolic syndrome, participants were generally healthy individuals. Under these criteria, 21 patients with obesity and 12 volunteers with normal weight were included in this study. The study protocol was in accordance with the Declaration of Helsinki and was approved by the Ethics Committee for Clinical Research of Hospital Clinico Universitario de Valladolid, Spain (C.I: 40/13, PNK-DHA2013-01). Participants provided written informed consent before any intervention related to the study. Participants received no monetary incentives.


Example 1.2. Very-Low-Calorie Ketogenic Diet Protocol

Patients included in this study derived from a randomized clinical trial investigating the effect of docosahexaenoic acid (DHA) supplementation in a very low-calorie ketogenic diet. The clinical trial consisted in two arms: one arm where patients follow a VLCKD and other arms where patients followed a VLCKD+DHA. Nutritional intervention was based on a commercial weight-loss program (PNK method®). Briefly, the intervention included an evaluation by the specialist physician conducting the study, an assessment by an expert dietician, and exercise recommendations. This method is based on high-biological-value protein preparations obtained from cow's milk, soy, avian eggs, green peas, and cereals. Each protein preparation contained 15 g protein, 4 g carbohydrates, 3 g fat, and provided 90-100 kcal. The VLCKD+DHA arm was supplemented with 500 mg DHA. The weight-loss program has five steps and adheres to the most recent guidelines of the EFSA (2015) on total carbohydrate intake. The first three steps consist of a VLCKD (600-800 kcal/day) that is low in carbohydrates (<50 g daily from vegetables) and lipids (only 10 g of olive oil per day). The amount of high biological-value proteins ranged between 0.8 and 1.2 g per kg of ideal body weight to ensure that patients were meeting their minimum bodily requirements and to prevent the loss of lean mass. In step 1, the patients ate high-biological-value protein preparations five times a day and vegetables with low glycemic indices. In step 2, one of the protein servings was substituted with a natural protein (e.g., meat or fish) either at lunch or at dinner. In step 3, a second serving of low-fat natural protein was substituted for the second serving of biological protein preparation. Throughout these ketogenic phases, supplements of vitamins and minerals, such as K, Na, Mg, Ca, and omega-3 fatty acids, were provided in accordance with international recommendations. These three steps were maintained until the patient lost the target amount of weight, ideally 80%. Because of this, the ketogenic steps varied in time depending on the individual and the weight-loss target. The total ketosis state lasted for a maximum of 60 days. In either step 4 or 5, ketosis was ended by the physician in charge of the patient based on the amount of weight lost, and the patient began a low-calorie diet (800-1500 kcal/day). At this point, the patients underwent a progressive incorporation of different food groups and participated in a program of alimentary re-education to guarantee long-term maintenance of the weight loss. The maintenance diet consisted of an eating plan balanced for carbohydrates, protein, and fat. Depending on the individual, calories consumed ranged between 1500 and 2000 kcal/day, with the goal of maintaining the weight loss and promoting a healthy lifestyle. During this study, patients followed the steps of the method until they reached the target weight, or up to a maximum of 4 months of follow-up, although patients remained under medical supervision for the following months. Patients visited the research team every 15±2 days to evaluate adherence and potential side effects. Complete anthropometry, body composition, and biochemical assessments were performed at four of the visits, which were determined according to the evolution of each patient through the steps of ketosis and weight loss: Visit 1 (Baseline), visit 2 (Maximum Ketosis), visit 3 (Reduced Ketosis) and visit 4 (Endpoint). DNA methylation and gene expression were performed at visits 1, 2, and 4.


In all visits, patients received dietary instructions, individual supportive counsel, and encouragement to exercise on a regular basis using a formal exercise program. Additionally, a program of reinforcement telephone calls was instituted, and a phone number was provided to all participants to address any concerns.


Example 1.3. Anthropometric Assessment

All anthropometric measurements were performed after an overnight fast (8 to 10 hours) under resting conditions in duplicate and performed by well-trained health workers. At each visit, patients were weighed on the same calibrated scale (Seca 200 scale, Medical Resources, EPI Inc OH, USA). BMI was calculated as body weight in kg, divided by the square of body height in meters (BMI=weight (kg)/height2 (m). Waist circumference (WC) was measured using a standard flexible non-elastic metric tape placed over the midpoint between the last rib and the iliac crest, with the patient standing and exhaling.


Example 1.4. Determining Levels of Ketone Bodies

Ketosis was determined by measuring ketone bodies, specifically β-hydroxy-butyrate (β-OHB), in capillary blood using a portable meter (GlucoMen LX Sensor, A. Menarini Diagnostics, Neuss, Germany; sensitivity <0.2 mmol/1). As with anthropometric assessments, all determinations of capillary ketonemia were made after an overnight fast of 8 to 10 hours. These measurements were performed daily by each patient during the entire VLCKD, and the corresponding values were reviewed using machine memory by the research team to control adherence. Additionally, β-OHB levels were determined at each visit by the physician in charge of the patient.


Example 1.5. DNA Methylation Analysis
DNA Preparation and Bisulphite Conversion

DNA from fresh-frozen (FF) blood samples was isolated using a standard phenol-chloroform/proteinase-k protocol according to the manufacturer's instructions, with slight modifications. Genomic DNA was isolated from leukocytes using the MasturPure™ DNA purification kit (Epicentre Biotechnologies, Madison, WI, USA). The isolated DNA was treated with RNase A for 1 h at 45° C. All DNA samples were quantified using the fluorometric method (Quan-iT PicoGreen DsDNA Assay, Life Technologies) and were assessed for purity using a NanoDrop (Thermo Scientific) to determine 260/280 and 260/230 ratio measurements. The integrity of the FF DNA was verified by electrophoresis in 1.3% agarose gel. DNA (500 ng) was bisulfite converted using the EZ DNA methylation kit Methylation-Gold (Zymo Research, CA, USA) according to the manufacturer's instructions, which converts non-methylated cytosine into uracil.


Infinium MethylationEPIC BeadChip

High-quality DNA samples (500 ng) obtained from blood leukocytes of patients included in the VLCKD+DHA arm of the clinical trial (discovery cohort; n=10 patients, 3 paired samples/patient) were selected for bisulfite conversion (Zymo Research; EZ-96 DNA Methylation™ Kit) and hybridization to Infinium MethylationEPIC BeadChip (Illumina) following the Illumina Infinium HD methylation protocol. DNA quality checks, bisulfite modification, hybridization, data normalization, statistical filtering, and value calculations were performed as previously described. Whole-genome amplification and hybridization were then performed on a BeadChip followed by single-base extension and analysis on a HiScan SQ module (Illumina) to assess cytosine methylation states. The annotation of CG islands (CGIs) used the following categorization: 1) shore, for each of the 2-kb sequences flanking a CGI; 2) shelf, for each of the 2-kb sequences next to a shore; and 3) open sea, for DNA not included in any of the previous sequences or in CGIs. The transcription start site 200 and the transcription start site 1500 indicate regions either 200 or 1500 bp from the transcription start site, respectively.


Pyrosequencing Analysis

Pyrosequencing was used to assess selected markers in 18 patients (validation cohort: (n=7 derived from the discovery cohort and n=11 from an independent cohort of patients; 3 paired samples/patient). DNA samples analyzed in the validation cohort were derived from patients included in the two arms of the clinical trial and merged for the statistical analysis (VLCKD: n=10; VLCKD+DHA: n=8). The primer sequences used in this analysis were designed using Qiagen's PyroMark Assay Design 2.0 software to hybridize to CpG-free sites to ensure methylation-independent amplification. Genomic DNA was isolated from FF blood leukocytes using the MasturPure™ DNA purification kit (Epicentre Biotechnologies, Madison, WI, USA), according to the manufacturer's instructions. DNA methylation analyses were performed using bisulfite-treated DNA (Zymo Research; EZ-96 DNA Methylation™ Kit) followed by a highly quantitative analysis based on PCR-based pyrosequencing using the PyroMark Q24 System version 2.0.7 (Qiagen). Methylation level was expressed as the percentage of methylated cytosine over the sum of methylated and unmethylated cytosines. Non-CpG cytosine residues were used as built-in controls to verify bisulfite conversion. The values are expressed as the mean for all sites. We also included human non-methylated and methylated DNA set as controls in each run (Zymo Research). The inter-assay precision (% CV) was <2.5%, intra-assay (% CV) was <1.0%.


Example 1.6. Expression Assay by qRT-PCR

RNA from blood leukocytes (n=18 patients) was extracted using Trizol (Invitrogen) according to the manufacturer's recommendations. The RNA concentrations were measured with a Nanodrop 2000 spectrophotometer (Thermo Scientific). From total extracted RNA, 2 μg were DNase treated using a DNA-free kit as a template (Ambion) to generate first-strand cDNA synthesis using the High-Capacity cDNA Reverse Transcription Kit (Applied Biosystems). Real-time quantitative polymerase chain reaction (qRT-PCR) was performed using TaqMan Universal PCR Master Mix, TaqMan Probes (Applied Biosystems), and the Step OnePlus Real-Time PCR System (Applied Biosystems). All experiments were performed in duplicate, and gene expression levels were normalized to the levels of housekeeping gene GAPDH. The fold change in gene expression was calculated using the 2−ΔΔCt relative quantitation method according to the manufacturer's guidelines (Applied Biosystems), and data are reported as the geometric mean (SEM). qRT-PCR experiments were performed in compliance with the MIQE (Minimum Information for Publication of Quantitative Real-Time PCR Experiments) guidelines (http://www.rdml.org/miqe).


Example 1.7. Statistical Analysis

The sample size of the current study was calculated to detect differences for methylation levels taking into account published values of epigenome-wide analysis in the field of obesity. The interventional differences were examined in two independent cohorts. Microarray-based DNA methylation analysis was performed in the discovery cohort (n=10 patients; 3 paired samples/patient), and then the identified genes were validated in an independent cohort of patients (validation cohort; n=18 patients; 3 paired samples/patient). Finally, the association between DNA methylation level of the identified CpG sites and the anthropometric or biochemical parameters was assessed in the global cohort of patients included in this study (n=28). The methylation level of each cytosine was expressed as a β value, which was calculated as the fluorescence intensity ratio of the methylated to the unmethylated version of the probe. β values ranged between 0 (unmethylated) and 1 (completely methylated) according to the combination of the Cy3 and Cy5 fluorescence intensities. Color balance adjustment and normalization were performed to normalize the samples between the two-color channels using Genome Studio Illumina software (V2010.3). Genome Studio normalizes data using different internal controls that are present on the Infinium MethylationEPIC BeadChip. This software also normalized data depending on internal background probes. β values with detected p-values>0.01 were considered to fall below the minimum intensity and threshold, and these CpGs were consequently removed from further analysis. Additionally, probes that contained single nucleotide polymorphisms (SNPs) at the 10 bp 3′ end of the interrogating probe were filtered out. To identify consistent patterns of DMCpGs due to the nutritional intervention, a linear model was fitted using a B-spline approximation. The three linear models were fitted: Model 1 was fitted by including the three points of the nutritional intervention to evaluate the general effect of VLCKD; Model 2 including baseline and maximum ketosis to evaluate the effect of ketosis and weight loss; Model 3 including methylation levels at maximum ketosis and endpoint to evaluate the effect of only weight loss, without ketosis. P values were adjusted for multiple comparisons using the false discovery rate (FDR) procedure of Benjamini and Hochberg, and results were considered statistically significant when FDR<0.10. Additionally, we applied a threshold for the significant sites based on the mean difference between visits with a minimum p value change of ±0.02. Euclidean cluster analysis of significant CpGs was performed using a heatmap function. The global methylation level was compared between the nutritional intervention visits by univariant ANOVA and a Bonferroni post-hoc analysis. All of the aforementioned statistical analyses were performed using R software (version 3.2.0). To estimate enrichment in biological processes, a hypergeometric test was performed using the GOstats package on the biological processes defined by gene ontology (GO). This analysis detected significant over-representation of GO terms in one set (i.e., list of identified genes) with respect to the entire genome. GO terms with an adjusted p-value<0.05 were considered significant. With SPSS version 21.0 software (SPSS Inc., Chicago, IL) for Windows XP (Microsoft, Redmond, WA), the genomic distribution of the differentially methylated CpGs was compared with the distribution of the CpGs from all analyzed sites on the Infinium MethylationEPIC BeadChip. P values were computed using the chi-square test to determine over- or under-representation of the CpGs. The potential association between anthropometric or biochemical parameters and DNA methylation levels (p-values) was evaluated using the Spearman coefficient test. Differences in DNA methylation levels and expression of the identified genes during the time-course of the intervention and between the nutritional intervention visits were assessed by the non-parametric tests, Kruskal Wallis and Mann-Whitney U, respectively. P≤0.05 was considered statistically significant.


Example 2. Results
Example 2.1. Patient Characteristics

Samples from a total of 21 patients who followed the nutritional intervention based on a VLCKD were compared with samples from 12 healthy volunteers with normal weight and evaluated in this study. We first evaluated the discovery cohort (n=10 participants with obesity who followed a VLCKD+DHA (n=5 women) and n=12 (6 women) volunteers with normal weight). An extended validation cohort composed of 11 patients (7 women) with obesity that followed a VLCKD+DHA or a VLCKD-DHA was also analyzed. Statistically significant differences were not observed between either cohort in age, gender, height, body weight, BMI, waist circumference, ketosis, or the response to weight loss treatment (Table 1). Differences statistically significant were only detected in body weight, BMI and waist circumference between patients with obesity and subjects with normal weight (Table 1). All patients lost weight after nutritional intervention (21.8±4.9/o), together with reductions in BMI (21.9±5.1%) and waist circumference (19.3±4.4%).


Example 2.2. DNA Methylation Changes During the Global VLCKD Intervention

DNA methylation profiles of blood leukocytes involving approximately 850 thousand CpGs were analyzed after VLCKD intervention. This analysis revealed statistically significant differences (cut-off point Δ≥0.02; FDR≤0.10) at 988 CpG sites, from a total of 739,222 valid CpGs (Table S2). The differentially methylated CpGs were mostly characterized as changes towards CpG hypomethylation occurring after nutritional intervention, in both total DMCpGs (FIG. 1A) and in the DMCpGs located in promoters, and islands or shores (FIG. 1B). This result of global hypomethylation was correlated with the downregulation in the expression of DNA methyltransferase (DNMT) 1 and the de novo methyltransferases DNMT3A and DNMT3B (FIG. 1C). The identified CpG sites mapped to 786 unique genes and we were able to separate the samples according to nutritional intervention visits using a hierarchical cluster approach (FIG. 1D). It should be noted that the methylation levels of the 988 CpG sites differentially methylated after nutritional intervention were altered to resemble methylation levels observed in samples from subjects with normal weight (FIG. 1C). The 20 DMCpGs with the highest difference with respect to baseline among genes that are represented by more than 2 CpGs are represented in Table 2. Regarding the functional distribution (FIG. 2), the differences in DNA methylation were mainly observed in open sea regions (FIG. 2A), with 43.2% of the DMCpG sites located in promoter regions and the majority of DMCpGs in the body (FIG. 2B). Moreover, the DMCpGs were mainly found in chromosomes 2, 9, 16, 17, 19, and 22 when compared with all CpGs analyzed (FIG. 2C). Among the 988 DMCpGs, we found 886 (89.7%) with decreased and 102 (10.32%) with increased levels of DNA methylation after nutritional intervention. Moreover, the DMCpGs that lost methylation with respect to baseline were located mainly in the open sea (FIG. 2D) and body (FIG. 2E). In contrast, the DMCpGs that gained methylation after the nutritional intervention were mostly located in promoters (TSS 200 and 1st exon) (FIG. 2D) and in CpG islands (FIG. 2E). Regarding chromosome distribution, the DMCpGs with decreased methylation levels after nutritional treatment were found on chromosomes 1, 4, 6 7, 8, 9, 14, and 16, whereas DMCpGs with increased methylation levels were mainly found in chromosomes 3, 5, 10, 11, 12, 17, 21, and 22 (FIG. 2F).


Example 2.3. Biological Significance of the Dietary Intervention-Related DMCpG Sites and Associated Genes

Interestingly, most differentially methylated genes belonged to a network significantly enriched in protein interactions (p<0.001) according to STRING analysis (FIG. 3A). GO analysis was performed to test whether certain molecular functions or biological processes were significantly enriched within the 786 genes associated with the 988 DMCpGs discovered through VLCKD intervention (FIG. 3B). Among the categories of functional processes that exhibited statistical significance (FDR<0.05), we found processes related to regulation of transcription, signal transduction, cell differentiation, proliferation and apoptosis, metabolic processes, response to hypoxia, protein processing, muscle organ and skeletal system development, nervous system development and axon guidance (FIG. 3B). Among these, we highlighted relevant pathways in the field of obesity physiopathology such as insulin signalling, protein digestion and absorption, adipocytokine signalling and muscle development (FIG. 4A-D). To investigate biological relevance, the CpG sites representing promoter regions (TSS1500, TSS200, 5′ UTR and 1 Exon) at CpG islands/shores were selected. This selection yielded 141 CpGs representing 150 unique genes. Based on this filter we identified CpG sites that could be genetic targets whose methylation is associated with VLCKD responses. Among these, the most representative gene was ZNF331, which was represented by 2 CpG sites located in the promoter and island with the highest difference with respect to baseline. Furthermore, FGFRL1 was also selected from among the DMCpG sites because of its biological relevance in metabolic pathways and obesity pathogenesis and because the methylation level of this gene in leukocytes was previously proposed as an episignature that mirrors methylation levels of dysfunctional adipose tissue in obesity.


Example 2.4. DNA Methylation Changes Associated with the Effects of Dietary-Induced Ketosis

An analysis comparing baseline (day 0) with maximum ketosis (day 30) yielded 1365 DMCpGs. With respect to all CpGs analyzed, these CpGs were found mainly in the open sea (FIG. 5A) and body (FIG. 5B) and in chromosomes 1, 10, 11, 17, 19, and 22 (FIG. 5C). The DMCpGs that gained methylation were found in the island and promoter and in chromosomes 1, 2, 3, 4 and 7. The DMCpGs that lost methylation were found in the open sea and body and in chromosomes 9, 10, 11, 12, 17, 21, 22 (FIG. 5D-F). With the aim of isolating the specific effects of ketosis on methylation profile, additional analysis was performed. A Venn diagram was created by including: DMCpGs Baseline−Maximum Ketosis=1365, DMCpGs Baseline−Endpoint=405, and DMCpGs Maximum Ketosis−Endpoint=21. Using these conditions, we identified 280 CpGs whose methylation was affected by the induced weight loss per se (Table S4) and 1239 CpGs were identified as VLCKD-induced ketosis-related DMCpGs (FIG. 6A). These VLCKD-induced ketosis-related DMCpGs corresponded to 966 annotated genes, and 161 of these were represented by 137 VLCKD-induced ketosis-related DMCpGs located in the promoter and island or shore (Table S3). Among the categories of functional processes that exhibited statistical significance (FDR<0.05), we found processes related to regulation of transcription, signal transduction, cell adhesion, cell differentiation, proliferation and apoptosis, as well as nervous system development and axon guidance. Moreover, these ketosis-related differentially methylated genes belonged to pathways involved in focal adhesion, insulin and adipocytokine signalling pathways, MAPK and P53 signalling pathways and in cancer and type II diabetes mellitus-related pathways (FIG. 6B). Overall pathways associated with obesity physiopathology. Among these, we highlighted relevant pathways in the field of obesity physiopathology such as insulin signalling, protein digestion and absorption, adipocytokine signalling and muscle development. To identify potentially novel signatures of DNA methylation associated with VLCKD-induced ketosis, those genes with more than 2 CpG sites located within CpG islands and shores and with a difference in β-values≥|2|% were selected. Based on these criteria, 12 genes were identified and are listed in Table 3. When the list was further filtered by promoter region, the genes CBFA2T3, C3orf38, JSRP1, and LRFN4 showed at least one VLCKD-induced ketosis-related DMCpG located in the promoter and island/shore.


Example 2.5. Validation of Candidate Genes in a Representative Cohort

We used pyrosequencing, a technique that is most feasible for studies of patients in hospitals, to evaluate the DNA methylation levels of ZNF331 and FGFRL1 in an independent cohort of samples from leukocytes (validation cohort; n=18 patients who follow a VLCKD+DHA or VLCKD-DHA merged Table 1). Statistically significant differences were found in the methylation levels after nutritional intervention with respect to baseline (FIG. 7A). After weight loss treatment, a statistically significant increase with respect to baseline was observed during maximal ketosis in the 4 CpGs evaluated (p=0.049). However, no statistically significant changes were observed in FGFRL1 methylation levels after the weight loss treatment (FIG. 7B). DNA methylation has previously been associated with transcriptional repression. Accordingly, the expressions of ZNF331 (FIG. 7C) and FGFRL1 (FIG. 7D) were evaluated. A statistically significant downregulation in the expression of ZNF331 was found after nutritional intervention, while the expression of FGFRL1 was upregulated, especially at maximum ketosis compared with baseline. Even though the results for methylation level of FGFRL1 were not validated in the independent cohort, the expression of this gene was inversely correlated with the methylation levels observed in the discovery cohort. Overall, these results suggest that epigenetic regulation of ZNF331 and FGFRL1 related to weight loss could have a relevant biological function. The validation part of the current study was performed by merged the two arms of the clinical trial because the initial results revealed that both arms induced similar weight loss and ketosis, the main outcome used to evaluate changes in the methylome. Indeed, a further analysis in the validation cohort keeping the two arms separated, showed that the trend in the methylation levels through the intervention was like that observed in the merged analysis for the studied genes, ZNF331 and FGFRL1. Differences through the intervention appeared to be higher in the VLCKD+DHA than in the VLCKD arm; however, a repeated measured ANOVA analysis depending on arm showed statistically significance only for the time-course of the intervention in ZNF331 methylation levels (p<0.01), without statistically significance for the interaction between time×arm, nor between the two arms (p>0.05).


CHR, Chromosome; FDR, False Discovery Rate

















Discovery cohort
Validation cohort












Obesity
Obesity
















Maximum


Maximum



Normal
Baseline
ketosis
Endpoint
Baseline
ketosis



weight
(day 0)
(day 30)
(day 180)
(day 0)
(day 30)





N
12
10
10
10
18*
18


Age (years)
50.3 ± 6.2
48.8 ± 9.20


47.1 ± 9.8 



Gender
6/6
5/5


7/11



(men/women)








Height (m)
1.67 ± 0.08
1.68 ± 0.08


1.65 ± 0.10



Body weight (Kg)
63.8 ± 8.7 
 93.4 ± 9.9a
84.3 ± 8.4
73.9 ± 6.7b
90.8 ± 11.6
81.9 ± 10.4


BMI (Kg/m2)
22.7 ± 1.49
 32.9 ± 1.4a
29.8 ± 1.7
26.1 ± 1.8b
33.2 ± 1.7 
30.06 ± 1.7 


Waist
77.4 ± 7.2 
111.1 ± 6.6a
102.3 ± 7.4 
90.2 ± 3.1b
108.3 ± 8.5 
100.1 ± 7.3 


circumference (cm)








Ketonemia (mM)

0.15 ± 0.07
2.11 ± 1.11b
0.15 ± 0.07
0.18 ± 0.08
1.71 ± 1.08b


Weight loss (%)


 9.69 ± 2.51
20.58 ± 5.17c

9.80 ± 1.99







Validation cohort
















Obesity
P value















Endpoint



Time x




(day 180)
Adiposity
Time
Cohort
Cohort






N
18







Age (years)

0.654

0.678




Gender








(men/women)








Height (m)

0.773

0.446




Body weight (Kg)
 70.4 ± 10.4b
<0.0001
<0.001
0.488
0.649



BMI (Kg/m2)
25.7 ± 1.7b
<0.0001
<0.001
0.986
0.334



Waist
86.9 ± 7.4b
<0.0001
<0.001
0.325
0.836



circumference (cm)








Ketonemia (mM)
0.18 ± 0.08

<0.0001
0.445
0.374



Weight loss (%)
22.52 ± 4.75c

<0.0001
0.336
0.455





Data shown are mean ± SD (standard deviation).


*The sample size of the validation cohort was completed with n = 7 patients from the discovery cohort and 11 patients from an independent cohort.


Abbreviations:


VLCKD, very-low calorie ketogenic diet.



aStatistically significant differences compared with control Normal weight in discovery cohort.




bStatistically significant differences compared with Baseline in both cohorts.




cStatistically significant differences compared with Maximum Ketosis in both cohorts.














TABLE 2







List of DMCpGs with the higest differences for Baseline-Maximum Ketosis-Endpoint between genes that are


represented by more than 2 CpGs.























Methylation levels

























CpG
(mean)
Differences
p




















TargetID
CHR
Position
Gene Name
Gene region
context
B
MK
E
MK − B
E − B
value
FDR






















cg04254103
19
1794330
ATP8B3; ATP8B3;
Body; Body; Body
N Shore
0.826
0.786
0.796
−0.039
−0.030
0.001
0.091





ATP8B3











cg06643002
14
105735797
BRF1; BRF1; BRF1;
Body; Body; Body;

0.782
0.741
0.748
−0.040
−0.034
0.001
0.099





BRF1; BRF1
Body; Body










cg12063937
1
7731375
CAMTA1
Body

0.837
0.785
0.802
−0.051
−0.034
0.000
0.054


cg00035197
16
88962986
CBFA2T3; CBFA2T3
Body; Body
Island
0.803
0.748
0.763
−0.056
−0.040
0.001
0.082


cg09962824
21
44479417
CBS
Body
N Shore
0.754
0.707
0.714
−0.047
−0.040
0.000
0.051


cg23790296
10
73233854
CDH23; CDH23;
Body; Body; Body;

0.846
0.814
0.820
−0.032
−0.026
0.001
0.095





CDH23; CDH23;
Body; Body













CDH23











cg26493726
19
36508614
CLIP3
Body
S_Shelf
0.808
0.771
0.773
−0.037
−0.035
0.000
0.069


cg01818220
9
23821773
ELAVL2; ELAVL2;
1stExon; 5′UTR;
Island
0.092
0.148
0.134
0.056
0.042
0.000
0.008





ELAVL2; ELAVL2
5′UTR; TSS1500










cg01933710
5
132596864
FSTL4
Body

0.828
0.778
0.799
−0.049
−0.029
0.001
0.076


cg07390459
2
121582002
GLI2
Body

0.768
0.720
0.727
−0.048
−0.041
0.001
0.097


cg14777822
2
121728297
GLI2
Body

0.770
0.728
0.726
−0.042
−0.044
0.001
0.093


cg16120742
7
50345049
IKZF1
5′UTR
S_Shore
0.114
0.058
0.041
−0.057
−0.073
0.000
0.026


cg02999309
10
134502626
INPP5A
Body
N_Shore
0.836
0.799
0.807
−0.037
−0.029
0.000
0.024


cg14010696
19
5119250
KDM4B
Body
Island
0.853
0.812
0.819
−0.041
−0.034
0.000
0.008


cg16333587
14
101369826
MEG8
Body

0.857
0.817
0.828
−0.040
−0.029
0.000
0.051


cg20963002
14
101360088
MEG8
TSS1500

0 862
0.821
0.828
−0.041
−0.034
0.001
0.098


cg18026309
2
26683651
OTOF; OTOF; OTOF;
Body; Body; Body;

0.884
0.851
0.857
−0.033
−0.027
0.000
0.051





OTOF; OTOF
Body; Body;










cg01764953
11
70814657
SHANK2
Body

0.914
0.887
0.887
−0.027
−0.026
0.000
0.067


cg19696891
19
54057705
ZNF331; ZNF331;
5′UTR; 5′UTR
Island
0.379
0.431
0.447
0.052
0.068
0.000
0.015





ZNF331
TSS1500










cg03643149
19
54041519
ZNT331; ZNF331;
TSS1500; 1stExon;
Island
0.397
0.445
0.458
0.048
0.061
0.000
0.019





ZNF331; ZNF331;
TSS200; TSS200;













ZNF331; ZNF331
5′UTR; 5′UTR













Data shown are mean.


Abbreviations:


B, baseline;


CHR, chromosome;


E, endpoint;


FDR, false discovery rate;


MK, maximum ketosis.













TABLE 3





List of DMCpGs with the highest differences for Baseline-Maximum Ketosis between genes


that are represented by more than 2 CpGs.























Gene

Disease



CpG


Target Id
name
Function
Annotation
CHR
Position
Gene region
Context





cg10143842
C3orf38
No items found

3
 88198517
TSS1500
Island


cg24029436



3
 88199835
Body
S_Shore


cg00035197
CBFA2T3
response to hypoxia, negative

16
 88962986
Body; Body
Island


cg01977582

regulation of cell

16
 88976280
5′UTR; Body
S_Shore


cg07243576

proliferation, granulocyte

16
 88973245
5′UTR; Body
N_Shelf


cg27102297

differentiation, negative

16
 88966903
Body; Body
S_Shore




regulation of glycolytic









process, negative









regulation of transcription,









DNA-templated,









regulation of aerobic









respiration







cg01775970
CBS
L-serine metabolic process,
Obesity-
21
 44486298
Body
Island


cg09962824

L-serine catabolic process,
related
21
 44479417
Body
N_Shore




cysteine biosynthetic process,
traits








L-cysteine catabolic process,









DNA protection,









homocysteine









catabolic process,









homocysteine metabolic









process, hydrogen sulfide









biosynthetic process







cg13033964
COL5A1
cell adhesion, cell migration,
Crohn's
9
137634551
Body; Body
S_Shore


cg13714791

collagen fibril organization,
disease
9
137694578
Body





collagen biosynthetic
Blood








process
pressure









Longevity






cg00308560
FAM20C
protein serine/threonine

7
  216899
Body
N_Shore


cg11554153

kinase activity, protein

7
  209165
Body
S_Shore




binding, manganese ion









binding







cg17915125
INPP5A
protein binding and PH

10
134476336
Body
N_Shore


cg02999309

domain binding

10
134502626
Body
N_Shore


cg10356204
JSRP1
skeletal muscle contraction

19
 2255744
TSS1500
S_Shore


cg16098170



19
 2255848
TSS1500
S_Shore


cg12010750
KCNC1
protein tetramerization
Night sleep
11
 17803160
Body
S_Shore


cg23787205


phenotypes
11
 17801046
Body
Island


cg03214876
KIAA1875
No items found

8
145166631
Body
S_Shore


cg11202914



8
145172221
Body
S_Shore


cg12378449
LRFN4
protein binding

11
 66627382
Body; Body;
N_Shore


cg19391515



11
 66626563
Body; Body
Island








Body; Body;









1stExon;









Body



cg12378449
PC
protein binding
Pyruvate
11
 66627382
Body; Body;
N_Shore


cg19391515


carboxylase
11
 66626563
Body; Body
Island





deficiency


Body; Body;









1stExon;









Body



cg16014906
STK32C
No items found

10
134095321
Body
N_Shore


cg24305451



10
134021178
3′UTR
S_Shore
















Methylation levels
















B
MK
p
















Target Id
Mean
SD
Mean
SD
value
FDR






cg10143842
0.066
0.114
0.024
0.024
0.001
0.096



cg24029436
0.113
0.105
0.059
0.038
0.000
0.018



cg00035197
0.803
0.041
0.748
0.036
0.000
0.051



cg01977582
0.812
0.031
0.782
0.012
0.001
0.094



cg07243576
0.849
0.028
0.817
0.017
0.001
0.098



cg27102297
0.767
0.032
0.731
0.023
0.001
0.088



cg01775970
0.873
0.012
0.852
0.014
0.000
0.077



cg09962824
0.748
0.037
0.706
0.031
0.000
0.044



cg13033964
0.825
0.023
0.775
0.033
0.000
0.025



cg13714791
0.839
0.025
0.813
0.024
0.001
0.096



cg00308560
0.857
0.014
0.836
0.013
0.000
0.046



cg11554153
0.821
0.020
0.788
0.017
0.000
0.052



cg17915125
0.879
0.020
0.852
0.011
0.000
0.079



cg02999309
0.836
0.024
0.799
0.020
0.000
0.021



cg10356204
0.697
0.040
0.654
0.032
0.001
0.099



cg16098170
0.806
0.034
0.770
0.025
0.000
0.085



cg12010750
0.834
0.030
0.803
0.019
0.000
0.069



cg23787205
0.894
0.031
0.869
0.016
0.000
0.086



cg03214876
0.875
0.019
0.843
0.013
0.000
0.006



cg11202914
0.905
0.017
0.886
0.010
0.000
0.010



cg12378449
0.780
0.036
0.742
0.023
0.001
0.097



cg19391515
0.812
0.025
0.785
0.015
0.000
0.032



cg12378449
0.780
0.036
0.742
0.023
0.001
0.097



cg19391515
0.812
0.025
0.785
0.015
0.000
0.032



cg16014906
0.841
0.023
0.819
0.019
0.000
0.070



cg24305451
0.843
0.035
0.810
0.030
0.001
0.091





Data shown are mean ± SD (standard deviation).


Abbreviations:


B, baseline;


CHR, chromosome;


FDR, false discovery rate;


MK, maximum ketosis.


















TABLE S2





TargetID
CHR
Position
Gene name
p.value
FDR




















cg26527092
1
1203337
UBE2J2
0.001
0.092


cg19933051
1
1210611
UBE2J2
0.000
0.060


cg16380285
1
1228011
ACAP3
0.000
0.046


cg06089960
1
1498081
SSU72
0.000
0.025


cg05642789
1
1564482
MIB2
0.000
0.008


cg14255243
1
2010660
PRKCZ
0.001
0.083


cg26864691
1
2947791

0.000
0.033


cg11727198
1
3138369
PRDM16
0.000
0.073


cg05822503
1
6095948
KCNAB2
0.000
0.072


cg06820287
1
6381947
ACOT7
0.001
0.078


cg24312879
1
6422118
ACOT7
0.001
0.089


cg22417343
1
7181417
CAMTA1
0.001
0.083


cg12063937
1
7731375
CAMTA1
0.000
0.054


cg24253158
1
8151275

0.000
0.069


cg23268115
1
8444616
RERE
0.000
0.051


cg00198750
1
9005913
CAG
0.000
0.055


cg11413763
1
9365494
SPSB1
0.000
0.055


cg24293507
1
10511793
APITD1; CORT
0.000
0.056


cg11737871
1
12834742
PRAMEF12
0.000
0.053


cg09936426
1
13839913

0.000
0.011


cg14111606
1
15326234
KAZN
0.000
0.054


cg25402408
1
18028182

0.000
0.060


cg25006925
1
19479891
UBR4
0.000
0.060


cg18202521
1
19600702
AKR7L
0.000
0.027


cg19953129
1
21583337
ECE1
0.001
0.100


cg02668903
1
22844900
ZBTB40
0.000
0.003


cg08375755
1
23106571
EPHB2
0.001
0.104


cg04703069
1
23126717
EPHB2
0.001
0.097


cg17974166
1
23280069

0.000
0.003


cg08266565
1
24286678
PNRC2
0.000
0.066


cg13139846
1
24668728
GRHL3
0.000
0.068


cg23990272
1
25906648

0.000
0.043


cg03601969
1
26038036
MAN1C1
0.001
0.083


cg00418303
1
26183261
C1orf135
0.001
0.096


cg11252625
1
26349557
EXTL1
0.001
0.082


cg23340977
1
27631370
WDTC1
0.000
0.036


cg24830331
1
28807088
PHACTR4
0.000
0.038


cg00889308
1
29166539
OPRD1
0.000
0.067


cg05627946
1
29775727

0.000
0.068


cg14032195
1
31187861
MATN1
0.001
0.078


cg06825886
1
31248544

0.000
0.070


cg00528191
1
33235717
KIAA1522
0.000
0.038


cg10281968
1
33633217
TRIM62
0.000
0.060


cg17102325
1
35223055
GJB5
0.000
0.039


cg06536967
1
35224064
GJB5; GJB4
0.000
0.049


cg08738123
1
35646369

0.001
0.086


cg19193875
1
40770189
COL9A2
0.000
0.058


cg13940715
1
44468298
SLC6A9
0.000
0.024


cg14026669
1
44855780

0.000
0.016


cg03671193
1
46899093
FAAHP1
0.000
0.043


cg15187606
1
47656853
PDZK1IP1
0.000
0.056


cg09677626
1
52372392

0.000
0.023


cg05363714
1
53191922
ZYG11B
0.001
0.085


cg10905858
1
53778725
LRP8
0.001
0.079


cg18989524
1
54706899
SSBP3
0.001
0.080


cg21614736
1
54881605

0.001
0.100


cg14948611
1
60237371
LOC101926944
0.000
0.055


cg23128263
1
66797473
PDE4B
0.000
0.061


cg24789365
1
89240187
PKN2
0.001
0.104


cg13901960
1
95492794
ALG14
0.001
0.075


cg15760451
1
10637295
LINC01397
0.000
0.060


cg07591395
1
45507220
RBM8A
0.000
0.067


cg15978276
1
145575814
PIAS3
0.000
0.017


cg26535484
1
150266313
MRPS21
0.000
0.004


cg19169619
1
150459535
TARS2
0.000
0.027


cg16370685
1
150899163
SETDB1
0.000
0.000


cg07422880
1
150945861
LASS2
0.001
0.090


cg27310485
1
153536563
S100A2
0.001
0.085


cg19813935
1
153959405
RAB13
0.001
0.079


cg10180169
1
155171810
THBS3
0.000
0.063


cg20335185
1
155715152
MSTO2P
0.000
0.065


cg15434589
1
155896708
SCARNA4; KIAA0907
0.001
0.093


cg16691898
1
156255600
TMEM79
0.000
0.044


cg11526218
1
156920040
ARHGEF11
0.001
0.092


cg18302806
1
157803021
CD5L
0.000
0.056


cg08390254
1
160084779
ATP1A2
0.001
0.104


cg00998438
1
166890436
ILDR2
0.000
0.002


cg26890123
1
169822076
SCYL3; SCYL3; C1orf112
0.000
0.058


cg23662453
1
170043658
KIFAP3
0.000
0.002


cg13922160
1
178340780
RASAL2
0.000
0.025


cg12711965
1
179736289
FAM163A
0.001
0.086


cg10146186
1
179781957
FAM163A
0.001
0.092


cg12910466
1
183535731
NCF2
0.000
0.019


cg05638359
1
190444387
FAM5C
0.000
0.034


cg03226454
1
198608163
PTPRC
0.000
0.015


cg03220671
1
201363221
LAD1
0.000
0.031


cg15989013
1
202549053
PPP1R12B
0.000
0.052


cg12488895
1
203317913
FMOD
0.001
0.084


cg16045750
1
204532895

0.001
0.078


cg13354084
1
205631862
SLC45A3
0.001
0.085


cg21164723
1
214776304
CENPF
0.000
0.013


cg00792251
1
223888905
CAPN2
0.000
0.065


cg11258640
1
230529823
PGBD5
0.000
0.031


cg10840412
1
235813424
GNG4
0.000
0.019


cg04737369
1
243245347
LINC01347
0.001
0.084


cg04751986
1
247455300

0.000
0.064


cg03758732
2
2030712
MYT1L
0.000
0.043


cg02377589
2
2734065

0.001
0.097


cg05226443
2
3039776
LINC01250
0.000
0.037


cg25883141
2
3689356
COLEC11
0.001
0.085


cg16843994
2
4704518

0.001
0.094


cg02858338
2
9813953

0.000
0.031


cg09171253
2
10567147
HPCAL1
0.000
0.069


cg27483367
2
20057796

0.000
0.073


cg15843262
2
25473895
DNMT3A
0.000
0.007


cg22829909
2
26189722
KIF3C
0.001
0.086


cg18026309
2
26683651
OTOF
0.000
0.051


cg07892276
2
26718652
OTOF
0.000
0.059


cg15117008
2
27482048
SLC30A3
0.001
0.080


cg18063937
2
38494762

0.001
0.077


cg00206414
2
39949510
BCOR
0.001
0.104


cg06081849
2
45483405
LINC01121
0.001
0.092


cg14398243
2
46385031
PRKCE
0.000
0.048


cg08110015
2
47072833
LINC01119
0.000
0.065


cg04437845
2
47291703
TTC7A
0.000
0.053


cg16665410
2
54890466
SPTBN1
0.001
0.077


cg06968475
2
58468575
FANCL
0.000
0.012


cg22318391
2
62688902

0.001
0.103


cg15603846
2
65808546

0.000
0.015


cg16279589
2
69747475
SNORA36C; AAK1
0.001
0.089


cg24682412
2
70190193
ASPRV1; PCBP1-AS1
0.001
0.100


cg02002719
2
70520039
SNRPG
0.000
0.049


cg18749055
2
70823641

0.000
0.060


cg16893679
2
74455047
SLC4A5
0.001
0.100


cg27004195
2
79866085
CTNNA2
0.000
0.029


cg21937479
2
84686716
SUCLG1
0.000
0.033


cg13650484
2
95945517
PROM2
0.001
0.089


cg02862405
2
96944524
SNRNP200
0.000
0.009


cg15149655
2
98703698
VWA3B
0.000
0.070


cg22162422
2
100634259
AFF3
0.000
0.029


cg03559235
2
100937944
LONRF2
0.001
0.101


cg23055617
2
109223691
LIMS1
0.001
0.097


cg07390459
2
121582002
GLI2
0.001
0.093


cg14777822
2
121728297
GLI2
0.000
0.057


cg07622245
2
121742395
GLI2
0.001
0.092


cg26548729
2
127401321

0.001
0.087


cg11836155
2
127814123
BIN1
0.000
0.020


cg09427429
2
128450658

0.000
0.038


cg15136850
2
128471169
WDR33
0.000
0.062


cg27174698
2
129244189

0.000
0.023


cg27022372
2
130986904

0.001
0.093


cg08007557
2
131305411
LOC150527
0.000
0.010


cg14923640
2
139537826
NXPH2
0.000
0.033


cg15899474
2
172779515
HAT1
0.000
0.026


cg17160437
2
175206075

0.000
0.001


cg19979107
2
175351956
GPR155
0.001
0.092


cg05249955
2
175439948
WIPF1
0.000
0.054


ce19447671
2
176032513
ATF2; MIR933
0.000
0.013


cg03178820
2
190627986
OSGEPL1
0.000
0.069


cg09907068
2
197159060
HECW2
0.000
0.004


cg17356720
2
197664515
GTF3C3
0.000
0.027


cg24512321
2
199179548
LOC101927619
0.000
0.060


cg16641411
2
208396116
CREB1
0.000
0.031


cg03148038
2
217526915
IGFBP2
0.000
0.073


cg12298075
2
219288338
VIL1
0.000
0.039


cg22952218
2
219561197
STK36
0.001
0.092


cg11926268
2
219566746
STK36
0.001
0.083


cg25569248
2
220162085
PTPRN
0.000
0.063


cg12098401
2
220247547
DNPEP
0.000
0.024


cg18607830
2
225811738
DOCK10
0.000
0.037


cg01021245
2
230911000
SLC16A14
0.001
0.086


cg16307753
2
232235204
ARMC9
0.000
0.033


cg19645671
2
232651079
COPS7B
0.001
0.084


cg15923928
2
234122237

0.001
0.090


cg02789126
2
234667777
UGT1A10; UGT1A1; UGT1A6; UGT1A8; UGT1A4; UGT1A3; UGT1A6; L
0.000
0.013


cg21431856
2
235906251
SH3BP4
0.001
0.094


cg21143225
2
236239982

0.001
0.091


cg05763915
2
238487087
RAB17
0.000
0.073


cg13094681
2
239331631

0.000
0.066


cg14380745
2
239342363
ASB1
0.000
0.063


cg09581663
2
239628381

0.000
0.063


cg12303103
2
239847901
FLI43879
0.000
0.041


cg06738121
2
240497985

0.000
0.024


cg18470008
2
240664063

0.001
0.101


cg07131284
2
241223697

0.000
0.020


cg20262764
2
241465215
ANKMY1
0.000
0.003


cg10314439
2
242020487
SNED1
0.000
0.054


cg13788902
2
242434635
STK25
0.001
0.089


cg18266860
2
243028057

0.000
0.020


cg21545052
3
9055203
SRGAP3
0.000
0.059


cg17606932
3
10447086
ATP2B2
0.001
0.082


cg21993298
3
11609685
VGLL4
0.001
0.098


cg06435590
3
13096330
IQSEC1
0.000
0.030


cg07137228
3
13684292

0.000
0.018


cg11099600
3
14558454
GRIP2
0.001
0.096


cg00433119
3
14860361
FGD5
0.001
0.105


cg15152946
3
15108103
MRPS25
0.001
0.104


cg13623862
3
33122628
GLB1
0.000
0.019


cg21825149
3
34118619

0.000
0.066


cg11308937
3
39149072
GORASP1; GORASP1; TTC21A; TTC21A
0.000
0.024


cg10809309
3
42555433
VIPR1
0.001
0.086


cg18169589
3
47049133
NBEAL2
0.000
0.015


cg16586182
3
47516702
SCAP
0.000
0.024


cg12259140
3
48599829
UCN2
0.000
0.013


cg17780891
3
48754256
IP6K2
0.000
0.071


cg24522183
3
49136601
QARS
0.001
0.078


cg00906510
3
49750801
RNF123
0.000
0.008


cg14986395
3
49824225
IP6K1
0.001
0.105


cg01917209
3
49938721
MST1R
0.001
0.076


cg16222802
3
50295474
GNAI2
0.000
0.060


cg09664467
3
50477984
CACNA2D2
0.000
0.068


cg19498531
3
52114795
POC1A
0.000
0.032


cg18115813
3
52856772
ITIH4-AS1; ITIH4; ITIH4
0.000
0.018


cg22151200
3
53781986
CACNA1D
0.000
0.061


cg05526341
3
66489362
LRIG1
0.000
0.074


cg02406285
3
67048577
KBTBD8
0.000
0.030


cg24029436
3
88199835
C3orf38
0.000
0.024


cg16139664
3
101405661
RPL24
0.000
0.039


cg17812951
3
113415923
KIAA2018
0.000
0.053


cg24314608
3
113431267

0.000
0.037


cg17198917
3
119381218

0.001
0.090


cg24124753
3
120461562
GTF2E1; GTF2E1; RABL3
0.000
0.051


cg20230305
3
123418791
MYLK
0.000
0.007


cg06683678
3
123659871
CCDC14
0.000
0.019


cg12397269
3
125790417
SLC41A3
0.001
0.085


cg12563471
3
126270014
C3orf22
0.000
0.008


cg21659425
3
126277078
C3orf22
0.000
0.016


cg08668199
3
127795571

0.000
0.056


cg23519086
3
128131147

0.000
0.052


cg16378517
3
128427669

0.001
0.096


cg19971049
3
128841434
RAB43; RAB43; RAB43; RAB43; RAB43; RAB43; RAB43; ISY1-RAB43
0.000
0.025


cg05944173
3
129281962
PLXND1
0.001
0.079


cg21647473
3
136581035
NCK1
0.000
0.057


cg23008404
3
137728997
CLDN18
0.000
0.064


cg16364085
3
138043140
TXNDC6
0.001
0.079


cg15579567
3
138952482
PISRT1
0.000
0.035


cg22954459
3
141553289

0.000
0.068


cg27385501
3
149526163

0.000
0.001


cg12864915
3
179755019
PEX5L
0.001
0.080


cg01876619
3
183971267
ECE2
0.001
0.086


cg25162301
3
186330055
AHSG
0.000
0.039


cg10214896
3
194488545
LOC100507391
0.000
0.070


cg23195322
3
194935437
XXYLT1
0.000
0.045


cg11387368
3
195491945
MUC4
0.000
0.056


cg16185365
3
196230308
RNF168
0.001
0.104


cg19797956
4
879432
GAK
0.000
0.066


cg04145890
4
1007657
FGFRL1
0.001
0.089


cg25792473
4
1029484

0.001
0.078


cg23450578
4
1950878
WHSC1
0.001
0.098


cg17307696
4
2072629

0.000
0.034


cg15003465
4
2276849
ZFYVE28
0.001
0.105


cg20163033
4
2627194
FAM193A
0.001
0.086


cg09299732
4
3807421

0.000
0.047


cg12344589
4
7789970
AFAP1
0.001
0.075


cg17674418
4
8304222
HTRA3
0.000
0.070


cg16270231
4
8468878
C4orf23
0.000
0.067


cg00575844
4
8549980

0.000
0.010


cg01089498
4
11428985
HS3ST1
0.000
0.065


cg11364056
4
15985958
PROM1
0.000
0.039


cg17373573
4
17494100
QDPR
0.000
0.011


cg17573292
4
24801801
SOD3
0.000
0.010


cg24396566
4
52904500
SGCB
0.001
0.089


cg25181751
4
55405864

0.000
0.025


cg04954615
4
56913133

0.000
0.036


cg17074816
4
68410573
CENPC1
0.000
0.032


cg02087774
4
76419649
RCHY1
0.000
0.039


cg22533356
4
82415477

0.000
0.010


cg20065014
4
99574250
TSPAN5
0.001
0.089


cg14155027
4
106888581
NPNT
0.000
0.030


cg24807339
4
113831264
ANK2
0.000
0.025


cg02558142
4
116011750
NDST4
0.001
0.097


cg16487601
4
120465560
PDE5A
0.001
0.092


cg18669481
4
124570724

0.000
0.053


cg14990681
4
138655843

0.000
0.026


cg03316672
4
140224059
NDUFC1
0.001
0.085


cg24127867
4
154016624

0.001
0.092


cg25060361
4
158690338

0.001
0.085


cg10633772
4
159122850

0.001
0.091


cg17914657
4
183659641
TENM3
0.000
0.015


cg16248329
4
187644739
FAT1
0.000
0.073


cg10868030
5
192650
LRRC14B
0.000
0.030


cg12207033
5
405488
AHRR; LOC100310782
0.000
0.046


cg01950495
5
664559
TPPP
0.001
0.088


cg09372028
5
881164
BRD9
0.000
0.034


cg19008100
5
1200592
SLC6A19
0.000
0.049


cg23190972
5
9069719
SEMA5A
0.000
0.074


cg00994491
5
17522582

0.000
0.007


cg04209913
5
37836246
GDNF
0.000
0.010


cg12092888
5
43314056
HMGCS1
0.000
0.054


cg08904082
5
60457901
C5orf43
0.000
0.071


cg07011152
5
61682030
KIF2A
0.000
0.052


cg09575568
5
63986889
FAM159B
0.000
0.020


cg11140679
5
66038055
MAST4
0.000
0.073


cg15866432
5
67337284

0.000
0.016


cg20132513
5
72974479
ARHGEF28
0.001
0.082


cg16756660
5
87570655
TMEM161B-AS1
0.000
0.016


cg13107682
5
90139381
ADGRV1
0.000
0.052


cg05033239
5
90458832
GPR98
0.000
0.023


cg07027680
5
92917049
NR2F1-AS1
0.000
0.017


cg04452110
5
95297792
ELL2
0.000
0.067


cg08527204
5
107006512
EFNA5
0.000
0.040


cg26503344
5
123333895

0.000
0.017


cg12445693
5
126111951
LMNB1
0.000
0.062


cg11086697
5
131395849
IL3
0.000
0.029


cg11745021
5
131879416
IL5
0.001
0.076


cg01933710
5
132596864
FSTL4
0.000
0.048


cg21748497
5
132624539
FSTL4
0.000
0.073


cg04579904
5
133039612

0.000
0.060


cg05093612
5
133249137
WSPAR
0.000
0.066


cg00224174
5
133300959
C5orf15
0.000
0.016


cg00787942
5
135382373
TGFBI
0.001
0.092


cg05993306
5
137090649
HNRNPA0
0.000
0.054


cg09469111
5
138731441
LOC389333
0.000
0.057


cg12003729
5
140048446
WDR55
0.001
0.078


cg10916398
5
141591592

0.001
0.097


cg22783088
5
147807068
FBXO38
0.001
0.086


cg09757689
5
149862429
LOC102546298
0.000
0.050


cg04474247
5
149925323
NDST1
0.001
0.076


cg01684706
5
150585095
CCDC69
0.001
0.105


cg09628766
5
151202431
GLRA1
0.001
0.085


cg06384579
5
152825342

0.001
0.089


cg10548700
5
157158263
THG1L
0.001
0.092


cg19622345
5
161923051

0.000
0.053


cg24649554
5
169291240
FAM196B; DOCK2
0.000
0.073


cg12491223
5
169537111

0.001
0.080


cg00059880
5
171761658
SH3PXD2B; SH3PXD2B
0.001
0.080


cg16117125
5
172258491

0.000
0.052


cg12647638
5
173145521
LINC01484
0.001
0.092


cg05292309
5
175618250
LOC643201
0.000
0.035


cg11186396
5
175722680
SIMC1
0.000
0.065


cg25199188
5
176742719

0.000
0.020


cg01551388
5
176958396
FAM193B
0.001
0.088


cg24378020
5
178749602
ADAMTS2
0.033
0.000


cg25368148
6
191117
LOC285766
0.000
0.010


cg23579481
6
3885734

0.000
0.057


cg01724517
6
3933058

0.001
0.092


cg08586066
6
16238667
GMPR
0.000
0.018


cg07625712
6
20653535
CDKAL1
0.001
0.102


cg09721630
6
29523835
UBD
0.001
0.093


cg27311647
6
30309124
TRIM39
0.000
0.022


cg20452558
6
30624035
DHX16
0.000
0.060


cg03825488
6
30885460
VARS2
0.000
0.060


cg17468317
6
31620788
BAT3
0.000
0.067


cg03570253
6
31651411

0.000
0.033


cg02720683
6
31671215
BAT5
0.001
0.088


cg25120992
6
31735435
C6orf27
0.000
0.063


cg22974212
6
31744040
C6orf27
0.000
0.012


cg16164092
6
31782675
HSPA1L
0.000
0.004


cg19732154
6
32164558
GP5M3; NOTCH4
0.000
0.073


cg11949420
6
32168681
NOTCH4
0.000
0.035


cg16753237
6
32407689
HLA-DRA
0.000
0.019


cg25749212
6
32938950
BRD2
0.001
0.093


cg13403999
6
33390148
SYNGAP1
0.000
0.062


cg08799655
6
35183390
SCUBE3
0.001
0.084


cg01545076
6
36760497
CPNE5
0.000
0.048


cg10553343
6
40360437
LRFN2
0.000
0.038


cg09760114
6
41484656
LINC01276
0.001
0.088


cg22907985
6
73128547

0.000
0.024


cg08551297
6
76343363
SENP6
0.000
0.041


cg18389283
6
83931782
ME1
0.001
0.075


cg25924977
6
106901847

0.000
0.004


cg26252167
6
110300573
GPR6
0.000
0.012


cg20679517
6
110966949
CDK19
0.000
0.038


cg13273398
6
116937346
RSPH4A
0.000
0.073


cg15002362
6
129796899
LAMA2
0.000
0.061


cg11916322
6
134303950
TBPL1
0.000
0.008


cg02444699
6
137316100

0.000
0.004


cg17772171
6
144608178

0.001
0.104


cg20420329
6
156403576

0.000
0.036


cg18345781
6
156681298

0.000
0.025


cg04721711
6
157370383
ARID1B
0.001
0.092


cg10445915
6
158194559

0.000
0.056


cg01059428
6
159487759

0.000
0.070


cg04462132
6
161860635
PARK2
0.001
0.098


cg16958667
6
161863721
PARK2
0.001
0.089


cg22911934
6
168844755
SMOC2
0.001
0.084


cg11554153
7
209165
FAM20C
0.000
0.045


cg00308560
7
216899
FAM20C
0.001
0.082


cg24921614
7
919082
C7orf20
0.001
0.101


cg02634628
7
1308420

0.001
0.092


cg20148727
7
1534881
INTS1
0.000
0.009


cg24577389
7
2082868
MAD1L1
0.000
0.001


cg25039517
7
3342254
SDK1
0.001
0.089


cg01027553
7
4037843
SDK1
0.001
0.099


cg07926598
7
4175200
SDK1
0.000
0.040


cg04953155
7
5012784
RNF216L
0.000
0.058


cg14181552
7
17071794

0.000
0.068


cg07297397
7
23510112
IGF2BP3
0.000
0.004


cg26055458
7
26242418
CBX3
0.000
0.041


cg23096130
7
26530203
LOC441204
0.000
0.068


cg27313941
7
27186554
HOXA6
0.000
0.073


cg18395623
7
29986771
SCRN1
0.001
0.082


cg21181355
7
44147676
AEBP1
0.000
0.039


cg24664672
7
44794445
ZMIZ2
0.000
0.019


cg08711604
7
47092661

0.001
0.077


cg03090803
7
47447988
TNS3
0.000
0.048


cg06871974
7
47578960
TNS3
0.001
0.076


cg27341156
7
50342251
IKZF1
0.000
0.026


cg16120742
7
50345049
IKZF1
0.000
0.038


cg12908660
7
50536269
DDC
0.001
0.096


cg25950757
7
50905796

0.000
0.055


cg12184219
7
71510157
CALN1
0.000
0.000


cg20311868
7
73256971
WBSCR27
0.000
0.033


cg07536498
7
73428342

0.000
0.017


cg20775553
7
77165979
PTPN12
0.000
0.026


cg05802532
7
77325208
RSBN1L
0.000
0.016


cg13205784
7
91875234
KRIT1
0.000
0.065


cg03716590
7
95435309
DYNC1I1
0.000
0.051


cg03092772
7
97858152
TECPR1
0.000
0.029


cg05490875
7
100444627

0.000
0.015


cg22633390
7
100964966
RABL5
0.000
0.045


cg00307737
7
124402490
GPR37
0.000
0.005


cg05001908
7
128045859
IMPDH1
0.001
0.091


cg24606273
7
128492991
FLNC
0.000
0.041


cg15154229
7
130020011
CPA1
0.000
0.007


cg03914913
7
130419754
KLF14
0.001
0.090


cg25778497
7
134932580
STRA8
0.001
0.098


cg13487431
7
139521045
TBXAS1
0.001
0.085


cg08835464
7
142569053
TRPV6
0.000
0.067


cg01676938
7
150631584

0.000
0.047


cg05472078
7
150768939
SLC4A2
0.000
0.071


cg00920126
7
151091880
WDR86
0.001
0.088


cg09499965
7
151220664

0.001
0.100


cg27376589
7
151386845
PRKAG2
0.001
0.092


cg19713140
7
157584994
PTPRN2
0.000
0.048


cg24732698
7
158405294

0.000
0.049


cg07163719
8
652755
ERICH1
0.000
0.063


cg25624690
8
1080669

0.001
0.075


cg13367644
8
1444085

0.000
0.014


c802987368
8
1605546
DLGAP2
0.001
0.075


cg08059631
8
6274876
MCPH1
0.000
0.036


cg14718293
8
6630755

0.000
0.058


cg27115745
8
8423471

0.001
0.081


cg14834091
8
21554072
GFRA2
0.000
0.038


cg18901355
8
21910989
EPB49
0.001
0.103


cg21054655
8
22064991
BMP1
0.000
0.074


cg03733263
8
22462867
KIAA1967
0.000
0.039


cg23675837
8
22564482

0.000
0.069


cg23602285
8
22865207
RHOBTB2
0.001
0.100


cg14840163
8
22921537
TNFRSF10B
0.000
0.022


cg27566516
8
27845877
SCARA5
0.001
0.100


cg00781782
8
28195649
PNOC
0.000
0.010


cg26631144
8
30670260
PPP2CB
0.000
0.041


cg04002325
8
30891687
PURG; PURG; WRN
0.000
0.042


cg19993819
8
41508117

0.001
0.085


cg08087849
8
49241635

0.000
0.028


cg15711016
8
61193066
CA8
0.000
0.032


cg05230553
8
67974631
COPS5
0.001
0.100


cg16928427
8
75765824
PI15
0.001
0.105


cg00379615
8
81895014
PAG1
0.000
0.039


cg18027810
8
94781387
TMEM67
0.000
0.041


cg18513638
8
96217222

0.000
0.030


cg26107736
8
98597206

0.000
0.009


cg12680929
8
101429030

0.000
0.008


cg07987196
8
101727818
PABPC1
0.000
0.034


cg13029807
8
103755591

0.000
0.062


cg07005767
8
107782538
ABRA
0.000
0.002


cg14433070
8
118893219
EXT1
0.000
0.055


cg14409958
8
120651652
ENPP2
0.001
0.098


cg21666851
8
125279274

0.001
0.087


cg26707981
8
126678212

0.000
0.061


cg00579505
8
134477188
ST3GAL1
0.000
0.021


cg09851121
8
136465595

0.000
0.040


cg13829887
8
142323725

0.000
0.032


cg07456135
8
142662408

0.001
0.099


cg01288167
8
143535437

0.001
0.097


cg02651442
8
144317970

0.000
0.053


cg14825413
8
144358566
GLI4
0.001
0.085


cg20008846
8
144521520
ZC3H3
0.000
0.068


cg17944171
8
144826596
FAM83H-A51
0.000
0.051


cg13699567
8
145058808
PARP10
0.000
0.013


cg03214876
8
145166631
KIAA1875
0.001
0.085


cg17965359
8
145577099
C8ORFK29
0.000
0.008


cg16829752
9
2158492
SMARCA2
0.001
0.093


cg11810416
9
16112066

0.000
0.008


cg01818220
9
23821773
ELAVL2
0.000
0.005


cg05379675
9
23826233
ELAVL2
0.000
0.027


cg14300943
9
27534289

0.001
0.086


cg09320516
9
34560633
CNTFR
0.000
0.001


cg06257733
9
35710881
MIR6852; TLN1; TLN1
0.001
0.090


cg13701768
9
36882152
PAX5
0.001
0.102


cg01548562
9
71836408
TIP2
0.000
0.035


cg25852440
9
72700080
MAMDC2
0.000
0.014


cg14645209
9
77568030
C9orf40
0.000
0.040


cg08449003
9
78981537

0.000
0.022


cg09357749
9
79073813
GCNT1
0.001
0.104


cg02030115
9
92043285
SEMA4D
0.000
0.044


cg06612480
9
100890738
CORO2A
0.000
0.025


cg03985630
9
116811954
ZNF618
0.000
0.049


cg13685314
9
122132178
DBC1
0.000
0.008


cg01986350
9
123639608
PHF19
0.000
0.023


cg17892331
9
123964477
RAB14
0.001
0.085


cg13802942
9
124107255
STOM
0.000
0.010


cg09819844
9
124576765

0.000
0.003


cg14236976
9
129377989
LMX1B
0.001
0.101


cg09478960
9
129963518
RALGPS1
0.000
0.036


cg09840374
9
130241598
LRSAM1
0.000
0.069


cg09657446
9
130710188
FAM102A
0.001
0.102


cg14299800
9
132564053
TOR1B
0.001
0.085


cg17389692
9
133271811
HMCN2
0.001
0.076


cg08461301
9
134208328

0.000
0.031


cg13396858
9
134249466

0.000
0.004


cg14600824
9
134430262

0.000
0.015


cg27571591
9
135569701

0.000
0.069


cg14856224
9
136100626

0.000
0.040


cg10375759
9
136758213
VAV2
0.000
0.037


cg13033964
9
137634551
COL5A1
0.001
0.081


cg14354024
9
138837667
UBAC1
0.000
0.066


cg22868971
9
139262548
CARD9
0.000
0.073


cg00607728
9
139319263

0.001
0.105


cg13475333
9
139585616

0.001
0.083


cg10434996
9
139633680
LCN10
0.000
0.040


cg00058235
9
139745287
PHPT1
0.000
0.056


cg00827663
9
139801358
TRAF2
0.000
0.063


cg02820283
9
139912268
ABCA2
0.000
0.034


cg13389382
9
140176236
C9orf167
0.000
0.073


cg16324184
10
3165537
PFKP
0.001
0.087


cg16819272
10
3212304
PITRM1
0.000
0.021


cg12056581
10
4173665

0.001
0.088


cg10241132
10
5568420
CALML3-AS1
0.001
0.091


cg19736712
10
5932028
ANKRD16; ANKRD16; ANKRD16; FBXO18
0.000
0.048


cg10516545
10
5983670

0.001
0.088


cg19229441
10
6008529
IL15RA
0.000
0.018


cg11828236
10
11213396
CELF2
0.001
0.078


cg25363704
10
11691859

0.001
0.085


cg06549547
10
13341008
PHYH
0.001
0.085


cg15881990
10
13628544
PRPF18
0.000
0.000


cg01003015
10
17271136
VIM
0.000
0.074


cg00177866
10
30645237

0.001
0.090


cg00798781
10
32661244
EPC1; LOC102031319
0.000
0.031


cg22738000
10
45466678
RASSF4
0.000
0.026


cg25095973
10
48413850
GDF2
0.000
0.013


cg23987444
10
50817810
SLC18A3; CHAT
0.001
0.095


cg16083082
10
51371691
LOC728407; PARG
0.000
0.012


cg15831769
10
63660953
ARID5B
0.000
0.030


cg05693308
10
63985934
RTKN2
0.001
0.095


cg23790296
10
73233854
CDH23
0.000
0.013


cg14150687
10
73356962
CDH23
0.000
0.021


cg14922784
10
73982598
ANAPC16
0.001
0.082


cg10501712
10
74812107
P4HA1
0.000
0.060


cg03576467
10
75012392
MRPS16
0.000
0.061


cg19766004
10
79166230
KCNMA1
0.000
0.047


cg05730301
10
79793430
RPS24
0.000
0.074


cg09514351
10
80960123
ZMIZ1
0.000
0.045


cg17716358
10
82268218
TSPAN14
0.001
0.091


cg06481504
10
86008430
RGR
0.000
0.037


cg18387270
10
89625287
PTEN
0.000
0.056


cg18691254
10
89969136

0.000
0.021


cg22954212
10
91410755

0.001
0.092


cg22410089
10
97033172
PDLIM1
0.000
0.001


cg11447699
10
99052509
ARHGAP19
0.000
0.042


cg04894473
10
100217230
HPSE2
0.000
0.010


cg26847029
10
101989492
CHUK
0.000
0.065


cg06776915
10
106028703
GSTO2
0.000
0.007


cg21185797
10
112631473
PDCD4-AS1
0.001
0.080


cg26017408
10
116161327
AFAP1L2
0.001
0.087


cg27264018
10
120442665
C10orf46
0.000
0.061


cg18371836
10
122553700

0.000
0.063


cg25347634
10
123438240

0.001
0.097


cg03965739
10
123989839
TACC2
0.000
0.004


cg08564661
10
124133785
PLEKHA1
0.001
0.082


cg26737090
10
133665882

0.000
0.057


cg02503633
10
134014536
DPYSL4
0.001
0.090


cg26253934
10
134267996

0.001
0.102


cg17915125
10
134476336
INPP5A
0.000
0.024


cg02999309
10
134502626
INPP5A
0.001
0.103


cg18720533
10
134833372

0.000
0.009


cg23927970
11
504933
RNH1
0.001
0.076


cg27349581
11
533756
HRAS
0.000
0.063


cg07339155
11
582126
PHRF1
0.000
0.024


cg12426895
11
799515
SLC25A22; PIDD1; PIDD1
0.000
0.011


cg01234748
11
2005425
LOC100133545:
0.000
0.010


cg05106294
11
12031097
DKK3
0.000
0.068


cg18245770
11
17032698
PLEKHA7
0.000
0.000


cg01795204
11
17332405
NUCB2
0.001
0.085


cg09436931
11
44026620

0.001
0.088


cg12406655
11
44637491
CD82
0.001
0.101


cg12274663
11
44968719
TP53I11
0.000
0.051


cg14688844
11
45012133

0.000
0.038


cg12406492
11
45274373
SYT13
0.000
0.039


cg21572636
11
55906512
OR8J3
0.001
0.089


cg12027899
11
58385947
ZFP91; ZFP91-CNTF
0.000
0.018


cg01597257
11
58613262
GLYATL2
0.001
0.085


cg05507213
11
60523681
MS4A15
0.000
0.016


cg26592208
11
61477833
DAGLA
0.000
0.025


cg06635371
11
62554837
TMEM179B
0.001
0.097


cg00895165
11
63779819
MACROD1
0.000
0.020


cg02149740
11
63954507
STIP1
0.001
0.086


cg24803202
11
64658903
MIR194-2
0.000
0.074


cg03990565
11
64885225
ZNHIT2
0.001
0.099


cg03196265
11
64937570
SPDYC
0.000
0.050


cg02856565
11
65366953
MAP3K11
0.001
0.100


cg03947398
11
65427365
RELA
0.000
0.039


cg08940143
11
65637415
EFEMP2
0.000
0.042


cg08442334
11
66411384
RBM4
0.000
0.058


cg19391515
11
66626563
PC; PC; LRFN4; PC
0.001
0.080


cg11490276
11
67442697
ALDH3B2
0.000
0.062


cg17102428
11
67813255
TCIRG1
0.000
0.036


cg07324903
11
68769194

0.001
0.101


cg19999580
11
69352297

0.000
0.030


cg19779886
11
69866327

0.000
0.012


cg00260235
11
69931262
ANO1; ANO1
0.000
0.049


cg22280264
11
70418162
SHANK2
0.000
0.067


cg01764953
11
70814657
SHANK2
0.000
0.031


cg19120782
11
71724432
NUMA1
0.000
0.013


cg18340983
11
72941691
P2RY2
0.001
0.086


cg18981392
11
74020906
LOC101928580; P4HA3; P4HA3; P4HA3
0.000
0.004


cg10650603
11
76415977
GUCY2EP
0.000
0.005


cg08180519
11
80584305

0.000
0.046


cg09446250
11
82430349

0.000
0.025


cg24528604
11
85778585
PICALM
0.000
0.015


cg05487150
11
86013051
C11orf73
0.001
0.092


cg25402433
11
103570047

0.000
0.048


cg02051418
11
111700634
ALG9
0.000
0.064


cg21574811
11
111798874
DIXDC1
0.000
0.011


cg19182353
11
118479428
PHLDB1
0.001
0.075


cg01397450
11
119290776
THY1; THY1; USP2-AS1
0.000
0.018


cg20698576
11
119544014
PVRL1
0.000
0.060


cg24964796
11
120411816

0.000
0.042


cg07081245
11
120433996

0.001
0.086


cg16515066
11
120500425
GRIK4
0.001
0.094


cg14917395
11
123300849

0.000
0.023


cg26673279
11
124739431
ROBO3
0.000
0.020


cg04807669
11
128636703
FLI1
0.000
0.029


cg11170573
11
134911302

0.000
0.039


cg19320967
12
864078
WNK1
0.001
0.084


cg03736954
12
6189353
VWF
0.001
0.102


cg01777913
12
7077090
PHB2; SCARNA12; PHB2
0.000
0.025


cg08718119
12
9436621
LOC642846
0.001
0.081


cg09757485
12
10022055
CLEC2B
0.000
0.040


cg13354523
12
10251574
CLEC1A
0.000
0.003


cg02335554
12
12715438
DUSP16
0.000
0.068


cg14409850
12
27091377
C12orf11; FGFR1OP2; FGFR1OP2
0.001
0.082


cg09885320
12
27735690
PPFIBP1
0.000
0.037


cg12703888
12
38710408
ALG10B
0.001
0.085


cg12204173
12
39296476
CPNE8
0.000
0.036


cg24533202
12
49581917
TUBA1A
0.001
0.098


cg25775493
12
51380625
SLC11A2
0.001
0.094


cg02516696
12
52206773

0.000
0.063


cg22504898
12
52294622

0.001
0.089


cg01853981
12
52946482
KRT71
0.000
0.032


cg23696712
12
53228141
KRT79
0.000
0.014


cg09692277
12
53261087

0.001
0.103


cg21112259
12
53567307
CSAD
0.001
0.087


cg10082177
12
56349394
PMEL
0.000
0.000


cg21041100
12
56367818
RAB5B
0.000
0.010


cg02897450
12
96185064
NTN4
0.000
0.036


cg21051375
12
99037948
IKBIP; APAF1; IKBIP; APAF1; APAF1; APAF1; IKBIP; APAF1
0.001
0.085


cg10522908
12
107689711

0.000
0.047


cg20566284
12
108955004
ISCU; ISCU; ISCU; ISCU; SART3; SART3
0.000
0.053


cg09215928
12
109670206
ACACB
0.000
0.031


cg19482754
12
110224547
TRPV4
0.000
0.029


cg18308664
12
110546961

0.001
0.096


cg17042483
12
112122418
ACAD10; ACAD10; BRAP
0.001
0.082


cg14784415
12
115890828

0.000
0.035


cg26294886
12
116007267

0.000
0.072


cg03606367
12
117047347

0.000
0.047


cg17066349
12
120130646
CIT
0.000
0.039


cg02725908
12
120637158
RPLP0
0.000
0.028


cg26872414
12
121206600
SPPL3
0.001
0.103


cg07949141
12
123451874
ABCB9
0.000
0.040


cg02969798
12
123467390
ARL6IP4
0.000
0.006


cg20181887
12
123753272
CDK2AP1
0.000
0.028


cg03147452
12
123868545
SETD8
0.000
0.030


cg19378602
12
125477596
BRI3BP
0.000
0.071


cg00163861
12
131981225

0.000
0.038


cg06378607
12
132426436
PUS1
0.000
0.020


cg13105730
12
132869185
GALNT9
0.001
0.103


cg04761414
12
133278889
PXMP2
0.000
0.038


cg02750435
12
133373625
GOLGA3
0.000
0.023


cg19724698
12
133380384
GOLGA3
0.000
0.029


cg12881443
12
133701363
ZNF891
0.000
0.000


cg04385050
13
20250739
PSPC1
0.000
0.034


cg13733630
13
25691600

0.000
0.012


cg14059288
13
47468240
HTR2A
0.001
0.078


cg23050971
13
112838022

0.001
0.081


cg11991127
13
113657974
MCF2L
0.001
0.084


cg05705096
13
113724113
MCF2L
0.000
0.034


cg20928950
13
113976443
LAMP1
0.001
0.081


cg19963836
13
114084693
ADPRHL1
0.000
0.036


cg09531041
13
114217456

0.001
0.090


cg10199121
13
114324085
GRK1
0.001
0.079


cg00810334
13
114324491
GRK1
0.001
0.098


cg19583934
13
114853252
RASA3
0.000
0.050


cg13718960
14
21271313
RNASE1
0.000
0.051


cg06030942
14
23564651
ACIN1
0.001
0.086


cg05041045
14
31091339
SCFD1
0.000
0.034


cg18079538
14
36947368
SFTA3
0.000
0.005


cg18522810
14
39736599
CTAGE5; CTAGE5; CTAGE5; CTAGE5; CTAGE5; CTAGE5; CTAGE5; CTA
0.000
0.032


cg12299771
14
50012007

0.000
0.064


cg01415341
14
53290485

0.000
0.034


cg06988994
14
55058332
SAMD4A
0.001
0.098


cg05426582
14
65417730
RAB15; RAB15; CHURC1-FNTB; CHURC1-FNTB
0.000
0.003


cg04029944
14
71353213

0.000
0.020


cg22441006
14
73371834

0.000
0.039


cg06479820
14
75783437

0.000
0.066


cg10024505
14
76818832

0.000
0.039


cg25558731
14
77031740

0.000
0.012


cg11591809
14
78059873
SPTLC2
0.000
0.060


cg16324934
14
86088580
FLRT2
0.000
0.070


cg13795652
14
90050804
FOXN3
0.000
0.013


cg14025214
14
90870360
CALM1
0.000
0.049


cg17291001
14
95107626
SERPINA13
0.000
0.020


cg18925366
14
99857143

0.000
0.072


cg05210689
14
100233454

0.001
0.098


cg20963002
14
101360088
MEG8
0.000
0.051


cg16333587
14
101369826
MEG8
0.000
0.005


cg14125733
14
101421065
SNORD114-5
0.000
0.018


cg13973927
14
104194981
ZFYVE21
0.000
0.028


cg11172332
14
105676791
BRF1
0.001
0.099


cg06643002
14
105735797
BRF1
0.000
0.004


cg12667463
14
106278558

0.000
0.027


cg02166383
14
107252649

0.001
0.075


cg00121759
15
22997975
CYFIP1
0.001
0.095


cg13938969
15
29409443
APBA2
0.000
0.010


cg11466962
15
30919020
ARHGAP11B
0.000
0.042


cg01241241
15
33202135
FMN1
0.000
0.050


cg04866639
15
41165181
RHOV
0.001
0.084


cg02766613
15
41200244

0.000
0.015


cg02953927
15
44038812
PDIA3; CATSPER2P1
0.000
0.042


cg04468564
15
49913596
C15orf33; DTWD1; DTWD1
0.000
0.068


cg13600513
15
50555482
HDC
0.000
0.033


cg21369592
15
59682427

0.000
0.045


cg26144783
15
63188008

0.000
0.011


cg25837909
15
63570396
APH1B
0.000
0.061


cg09848010
15
63663508
CA12
0.000
0.048


cg20953462
15
65040591
RBPMS2
0.000
0.019


cg07448057
15
65274427
SPG21
0.000
0.051


cg09874605
15
68123157
LBXCOR1
0.000
0.008


cg11552023
15
73595120
NEO1
0.001
0.089


cg06717289
15
75978121
CSPG4
0.001
0.090


cg08187458
15
78231808

0.000
0.048


cg12656006
15
78233786

0.001
0.083


cg22972628
15
78403545
CIB2
0.001
0.099


cg11032188
15
80478622
FAH
0.000
0.034


cg21621850
15
83480071
WHAMM
0.001
0.083


cg09239016
15
86130320
AKAP13
0.001
0.082


cg10767818
15
90806036

0.000
0.031


cg12449814
15
91590870

0.000
0.030


cg08863589
15
101873920
PCSK6
0.000
0.055


cg01127994
16
322773
RGS11
0.000
0.059


cg05409441
16
703822
WDR90
0.000
0.060


cg02814289
16
717213
RHOT2
0.001
0.101


cg23740245
16
737393
WDR24
0.000
0.073


cg08531623
16
969293
LMF1
0.001
0.093


cg01386581
16
1257191
CACNA1H
0.000
0.053


cg27191520
16
2127829
TSC2
0.000
0.006


cg23843797
16
2479325
CCNF
0.000
0.073


cg00705851
16
2581570
CEMP1
0.000
0.021


cg01953450
16
2818424
SRRM2
0.001
0.085


cg13829649
16
3051249

0.001
0.077


cg02512806
16
3775494
CREBBP
0.000
0.056


cg03553715
16
9052489
USP7
0.000
0.031


cg13310919
16
10336708

0.000
0.062


cg21339128
16
11585685

0.001
0.080


cg16089286
16
19884257
GPRC5B
0.000
0.014


cg05569877
16
22203612

0.000
0.025


cg05213745
16
22308244
POLR3E
0.001
0.077


cg09815776
16
25240081
AQP8
0.000
0.015


cg02754554
16
29234209

0.000
0.055


cg05130405
16
29298242

0.001
0.078


cg11282846
16
29325117
SNX29P2
0.000
0.039


cg23498806
16
30371145
TBC1D10B
0.001
0.091


cg01796044
16
30941664
FBXL19
0.000
0.008


cg12207279
16
31123200
BCKDK
0.000
0.072


cg19654612
16
48489741
MIR5095
0.000
0.034


cg08692277
16
49730710
ZNF423
0.001
0.090


cg16717267
16
50711285
SNX20
0.000
0.037


cg08568564
16
57209874
FAM192A
0.001
0.083


cg01487765
16
67271396
FHOD1
0.001
0.098


cg19694040
16
70816091
VAC14
0.001
0.104


cg17989884
16
71444299

0.001
0.103


cg23895001
16
72117593

0.000
0.067


cg20213863
16
73093470
ZFHX3
0.000
0.056


cg27583026
16
74456200
CLEC18B
0.001
0.099


cg02751838
16
75148330
LDHD
0.001
0.105


cg25317305
16
75301440
BCAR1
0.000
0.073


cg03634105
16
79831882
LINC01229
0.000
0.065


cg12107369
16
81295075
BCO1
0.000
0.017


cg02726465
16
84256613
KCNG4
0.001
0.101


cg00659029
16
88165938

0.001
0.094


cg05373438
16
88698776

0.000
0.070


cg12091956
16
88803110
PIEZO1; LOC100289580
0.001
0.082


cg00035197
16
88962986
CBFA2T3
0.001
0.082


cg07243576
16
88973245
CBFA2T3
0.000
0.032


cg10035270
16
89147095

0.000
0.028


cg03558177
16
89307718

0.000
0.062


cg19219936
16
89493189
ANKRD11
0.001
0.096


cg01714440
16
89749138

0.000
0.032


cg11496577
16
89960236
TCF25
0.001
0.101


cg07385388
17
110138
RPH3AL
0.000
0.049


cg27206140
17
727177
NXN
0.000
0.004


cg10065210
17
839526
NXN
0.001
0.098


cg10111813
17
1664630
SERPINF1
0.000
0.005


cg20961637
17
3765203
CAMKK1
0.000
0.049


cg21004604
17
4378085
SPNS3
0.000
0.023


cg00581295
17
4852013
PEN1
0.000
0.031


cg02493798
17
6899577
ALOX12
0.000
0.043


cg16759952
17
7330658
C17orf74
0.000
0.071


cg00966411
17
7622819
DNAH2
0.000
0.012


cg02542770
17
7790265
CHD3
0.000
0.034


cg08365067
17
9872456
GAS7
0.000
0.051


cg25729060
17
17088577
MPRIP
0.000
0.027


cg11580422
17
17133284
FLCN
0.000
0.032


cg10656972
17
17299636

0.000
0.039


cg09934977
17
18586148
ZNF286B
0.000
0.038


cg19839421
17
27047098
SNORD42B; RPL23A
0.001
0.091


cg05469679
17
29891004

0.001
0.077


cg07778180
17
34641309
CCL4L1
0.000
0.000


cg00688900
17
34901364
GGNBP2
0.001
0.075


cg19457603
17
37881102
ERBB2
0.000
0.009


cg03060036
17
40227961

0.001
0.088


cg24551459
17
40308110
RAB5C
0.000
0.074


cg10327704
17
40362643
STAT5B
0.000
0.070


cg11744144
17
41003352
AOC3
0.000
0.009


cg10632031
17
41149985
RPL27
0.000
0.025


cg21023447
17
43531077
PLEKHM1
0.000
0.043


cg19711530
17
44847427
WNT3
0.001
0.075


cg05085809
17
46671083
LOC404266; LOC404266; HOXB5; LOC404266; HOXB5; LOC404266
0.000
0.005


cg26787435
17
48207662
SAMD14
0.000
0.070


cg27604897
17
48266770
COL1A1
0.000
0.067


cg26876703
17
48540366
ACSF2
0.000
0.071


cg12496363
17
48918089
WFIKKN2
0.000
0.064


cg02661743
17
57057810
PPM1E
0.001
0.105


cg13734314
17
58099793

0.000
0.047


cg10912439
17
58112143

0.000
0.020


cg21381398
17
63070811

0.000
0.016


cg21948011
17
64251367

0.000
0.035


cg19671318
17
65059309

0.000
0.069


cg16629616
17
67363884

0.000
0.050


cg17985553
17
69847112

0.000
0.041


cg18911972
17
71259036
CPSF4L
0.000
0.062


cg21152875
17
73613020
MYO15B
0.000
0.066


cg11875706
17
73639654
RECQL5
0.000
0.047


cg04798684
17
74309056
PRPSAP1
0.001
0.104


cg05134708
17
74551866

0.000
0.066


cg16785556
17
75309501
SEPT9
0.000
0.005


cg04131638
17
76988208
CANT1
0.000
0.062


cg25879946
17
77076150
ENGASE
0.000
0.069


cg19673176
17
77116058
HRNBP3
0.000
0.021


cg02715531
17
77709027
ENPP7
0.000
0.069


cg02488145
17
77757732
CBX2
0.001
0.100


cg09596252
17
78655493
RPTOR
0.001
0.102


cg24683534
17
78877205
RPTOR
0.001
0.085


cg12432526
17
79354702

0.000
0.073


cg21635787
17
79359006
LOC100130370
0.000
0.041


cg09059758
17
79410417
BAHCC1
0.001
0.099


cg23028552
17
79459400

0.000
0.008


cg17445839
17
79859999
NPB
0.001
0.092


cg20299209
17
80130216
CCDC57
0.000
0.032


cg16927232
17
80206216
CSNK1D
0.000
0.049


cg02818912
17
80394113
HEXDC
0.000
0.029


cg08123067
17
81047183
METRNL
0.000
0.036


cg05461187
18
725885
YES1
0.001
0.085


cg14834507
18
9648658

0.001
0.087


cg24338716
18
10682340
PIEZO2
0.000
0.052


cg19272018
18
22002772

0.000
0.001


cg11064350
18
29671705
RNF138
0.000
0.073


cg04545219
18
43938407
RNF165
0.001
0.101


cg23824354
18
45690642

0.000
0.003


cg19786503
18
53255978
TCF4
0.000
0.044


cg12495077
18
77530773

0.000
0.060


cg23867721
18
77631069
KCNG2
0.000
0.031


cg12212774
19
1615407
TCF3
0.001
0.091


cg04254103
19
1794380
ATP8B3
0.000
0.000


cg11251319
19
1812732
ATP8B3
0.000
0.029


cg18302899
19
2038600
MKNK2
0.001
0.094


cg13643356
19
2202660
DOT1L
0.000
0.056


cg24924294
19
3765308
MRPL54
0.001
0.079


cg07469449
19
4715647
DPP9
0.000
0.008


cg06121031
19
5066714
KDM4B
0.001
0.103


cg14010696
19
5119250
KDM4B
0.001
0.099


cg01436279
19
5455638
ZNRF4
0.000
0.026


cg21221255
19
6241338
MLLT1
0.000
0.021


cg10473041
19
7260278
INSR
0.000
0.025


cg13621184
19
7459697
ARHGEF18
0.000
0.022


cg22255483
19
7599141
PNPLA6;
0.001
0.101


cg20234640
19
7767089
FCER2
0.000
0.026


cg17967227
19
7998995
TIMM44
0.000
0.011


cg23511072
19
8201137
FBN3
0.000
0.017


cg14522049
19
8578987
ZNF414
0.000
0.070


cg09271580
19
8934553
ZNF558
0.000
0.042


cg09779392
19
11094753
SMARCA4
0.000
0.027


cg00463083
19
11624896
ECSIT
0.000
0.009


cg19398112
19
14529923
DDX39
0.000
0.038


cg07847097
19
17837638
MAP1S
0.001
0.094


cg01020700
19
18867501
CRTC1
0.000
0.013


cg07588489
19
19745340
GMIP
0.000
0.003


cg05383947
19
22469242
ZNF729
0.000
0.035


cg23620904
19
30165018
PLEKHF1
0.001
0.078


cg02348989
19
31798530
TSHZ3
0.000
0.041


cg06688790
19
36054807
ATP4A
0.000
0.069


cg26493726
19
36508614
CLIP3
0.000
0.017


cg25156646
19
36523600
CLIP3; CLIP3; LOC101927572
0.001
0.085


cg01470900
19
39369830
RINL; RINL; SIRT2; SIRT2; SIRT2; SIRT2
0.000
0.011


cg04433253
19
41751971
AXL
0.000
0.035


cg06794268
19
41771003
HNRNPUL1
0.001
0.095


cg20657383
19
43033362
CEACAM1
0.001
0.092


cg15996407
19
48278549

0.000
0.063


cg23092421
19
49253689
FUT1
0.000
0.015


cg14310418
19
49422077
NUCB1-AS1
0.000
0.057


cg08017389
19
49553954

0.000
0.030


cg06283292
19
50837988
KCNC3; NAPSB
0.001
0.096


cg02776035
19
51161482

0.000
0.073


cg00847309
19
51303252
SNORD88A; C19orf48; C19orf48; SNORD88B
0.000
0.034


cg02278114
19
51457835
KLK5
0.000
0.019


cg03643149
19
54041519
ZNF331
0.000
0.015


cg19696891
19
54057705
ZNF331
0.000
0.038


cg07131807
19
54629249
PRPF31
0.000
0.073


cg07223467
19
54703415
RPS9
0.001
0.091


cg00562265
19
54899778

0.000
0.012


cg23070485
19
55083368
LILRA2
0.001
0.095


cg08747583
19
55144503
LILRB1
0.001
0.078


cg24863262
19
55738529
TMEM86B
0.001
0.099


cg24336447
19
56674759

0.000
0.008


cg15073088
19
56821774

0.000
0.036


cg05181865
19
58570652
ZNF135
0.000
0.010


cg12300074
19
58755150
ZNF544
0.000
0.021


cg04522915
20
646942
SCRT2
0.000
0.053


cg17437284
20
3686412
SIGLEC1
0.000
0.066


cg09619637
20
4163872
SMOX
0.000
0.047


cg17626915
20
5806000
C20orf196
0.001
0.080


cg08727812
20
17728257

0.000
0.065


cg12285945
20
25194912
ENTPD6
0.000
0.073


cg13985196
20
30729358
TM9SF4
0.001
0.102


cg00549758
20
31642282
C20orf185
0.000
0.027


cg01154911
20
35435852
SOGA1
0.001
0.092


cg13564967
20
36771794
TGM2
0.001
0.078


cg05082083
20
37055221
LOC388796; SNORA71B; LOC388796
0.000
0.035


cg21184415
20
39996039
EMILIN3
0.001
0.090


cg17986245
20
42159193
L3MBTL1
0.000
0.063


cg03058247
20
42981229

0.000
0.009


cg23353432
20
44639847
MMP9
0.000
0.037


cg09975852
20
46448207

0.000
0.058


cg00670835
20
52240169

0.001
0.104


cg01433416
20
55264962

0.000
0.042


cg04134555
20
55981417
RBM38
0.001
0.092


cg08009116
20
56285716
PMEPA1
0.000
0.048


cg05028514
20
57032469

0.000
0.022


cg14333666
20
60076649
CDH4
0.001
0.104


cg07047373
20
61733540
HAR1B
0.000
0.072


cg15272956
20
62332704
ARFRP1
0.000
0.054


cg05088515
21
14982779
POTED
0.001
0.075


cg01429669
21
36003945

0.001
0.079


cg04494594
21
37833531
CLDN14
0.000
0.037


cg08073527
21
43256581
PRDM15
0.000
0.052


cg27243685
21
43642366
ABCG1
0.001
0.099


cg20130085
21
43733981
TFF3
0.001
0.086


cg21703763
21
44065429

0.000
0.051


cg09962824
21
44479417
CBS
0.001
0.079


cg01775970
21
44486298
CBS
0.000
0.043


cg06795712
21
45344756
AGPAT3
0.000
0.047


cg09607525
21
45655347
ICOSLG
0.000
0.057


cg01368089
21
45810660
TRPM2
0.000
0.025


cg24850445
21
46306794
ITGB2
0.001
0.094


cg26038852
21
47640170
LSS
0.000
0.070


cg26997216
22
18062656
SLC25A18
0.000
0.044


cg01987637
22
18435125
MICAL3
0.001
0.091


cg13473117
22
19867665
TXNRD2
0.001
0.088


cg08829877
22
19960832
ARVCF
0.001
0.076


cg16614114
22
20381640

0.000
0.071


cg23309985
22
22390728

0.000
0.056


cg03804253
22
24204323
SLC2A11
0.000
0.010


cg05124770
22
24578799
SUSD2
0.001
0.081


cg21103763
22
28012091

0.000
0.028


cg23664774
22
29446636
ZNRF3
0.000
0.056


cg13739442
22
29730260
AP1B1; SNORD125, AP1B1; AP1B1
0.000
0.063


cg07693858
22
30413940
MTMR3; MTMR3; MTMR3; HORMAD2-AS1
0.001
0.076


cg12110826
22
30774026
KIAA1656
0.001
0.095


cg01530963
22
30949985

0.001
0.088


cg17163915
22
30968972

0.000
0.026


cg03722829
22
31489191
SMTN
0.001
0.077


cg21240468
22
36948071

0.001
0.096


cg03585335
22
38332384
MICALL1
0.000
0.023


cg06334865
22
40424536
FAM83F
0.001
0.081


cg02504025
22
41909971
ACO2
0.001
0.089


cg11343065
22
41911735
ACO2
0.000
0.019


cg08969198
22
43011054
RNU12; POLDIP3; POLDIP3
0.000
0.067


cg13821759
22
43092608
A4GALT
0.001
0.097


cg00243193
22
43190232

0.001
0.095


cg08129374
22
43506505
BIK
0.000
0.049


cg24231475
22
43608088
SCUBE1
0.001
0.091


cg14811630
22
43926472
EFCAB6-AS1; EFCAB6; EFCAB6
0.001
0.093


cg13093876
22
44834100

0.000
0.045


cg19856259
22
44834914

0.000
0.067


cg11468663
22
44840013
LOC101927526
0.000
0.026


cg19755003
22
46489736
LOC400931
0.001
0.083


cg20472334
22
46854259
CELSR1
0.000
0.069


cg20247625
22
46863295
CELSR1
0.001
0.081


cg27636142
22
46930238
CELSR1
0.000
0.044


cg18706131
22
49291056
LINC01310
0.001
0.084


cg12520986
22
49411355

0.000
0.008


cg10214827
22
50064867

0.000
0.022


cg07639483
22
50247176
ZBED4
0.001
0.075


cg27106191
22
50644873
SELO
0.000
0.004


cg16950696
X
102942205
MORF4L2
0.001
0.080


cg02569468
X
133927855
FAM122B
0.000
0.015


cg25200340
X
135578337
HTATSF1
0.001
0.092





















TABLE S3





TargetID
CHR
Position
Gene name
p.value
FDR




















cg07264491
1
665298
LOC100133331
0.000
0.065


cg25772221
1
1079622

0.000
0.015


cg19933051
1
1210611
UBE2J2
0.000
0.033


cg14875852
1
1963249

0.001
0.095


cg14255243
1
2010660
PRKCZ
0.000
0.073


cg05787839
1
2274735
MORN1
0.001
0.098


cg08832782
1
2771967

0.001
0.094


cg26864691
1
2947791

0.000
0.016


cg11727198
1
3138369
PRDM16
0.000
0.036


cg26538691
1
5328219

0.000
0.050


cg02664797
1
6145131
KCNAB2
0.000
0.062


cg02077561
1
6270963
RNF207
0.001
0.093


cg00911446
1
7520079
CAMTA1
0.000
0.083


cg05626334
1
7547946
CAMTA1
0.001
0.099


cg12063937
1
7731375
CAMTA1
0.000
0.032


cg24253158
1
8151275

0.000
0.071


cg00198750
1
9005913
CA6
0.000
0.051


cg11413763
1
9365494
SPSB1
0.000
0.027


cg24293507
1
10511793
APITD1; CORT
0.000
0.034


cg01234254
1
11577212
PTCHD2
0.000
0.079


cg17564493
1
11842320
C1orf167
0.001
0.097


cg11737871
1
12834742
PRAMEF12
0.000
0.026


cg14111606
1
15326234
KAZN
0.000
0.035


cg25706597
1
16324243

0.001
0.093


cg20433455
1
16699437
C1orf144
0.000
0.076


cg15189197
1
17490706

0.000
0.063


cg10858576
1
17566502
PADI1
0.001
0.096


cg01459162
1
17574330
PADI3
0.001
0.092


cg21908208
1
17865737
ARHGEF10L
0.000
0.055


cg25402408
1
18028182

0.000
0.058


cg09144953
1
18047056

0.000
0.077


cg10820203
1
22206962
HSPG2
0.000
0.072


cg05906643
1
22909822
EPHA8
0.001
0.091


cg08375755
1
23106571
EPHB2
0.001
0.090


cg04703069
1
23126717
EPHB2
0.000
0.048


cg18268968
1
23754434

0.000
0.078


cg03598444
1
23893158

0.000
0.012


cg13904134
1
24144067
HMGCL
0.000
0.026


cg13139846
1
24668728
GRHL3
0.000
0.043


cg11252625
1
26349557
EXTL1
0.000
0.049


cg11524330
1
27216759
GPN2
0.000
0.078


cg23340977
1
27631370
WDTC1
0.000
0.021


cg20981107
1
29645667
PTPRU
0.000
0.067


cg05627946
1
29775727

0.000
0.038


cg06825886
1
31248544

0.000
0.069


cg26625443
1
32129988
COL16A1
0.000
0.064


cg06464772
1
32792855
HDAC1
0.000
0.073


cg11832928
1
33180182

0.000
0.062


cg00528191
1
33235717
KIAA1522
0.000
0.028


cg10281968
1
33633217
TRIM62
0.000
0.060


cg26045166
1
34069126
CSMD2
0.001
0.097


cg17102325
1
35223055
GJB5
0.000
0.023


cg06536967
1
35224064
GJB5; GJB4
0.000
0.048


cg18752890
1
36508702
AGO3
0.000
0.031


cg17428913
1
36563557
COL8A2
0.000
0.030


cg21943268
1
40418380

0.000
0.069


cg19193875
1
40770189
COL9A2
0.000
0.029


cg06169284
1
41939629

0.000
0.073


cg13940715
1
44468298
SLC6A9
0.000
0.014


cg00003858
1
45080600
RNF220
0.000
0.058


cg03671193
1
46899093
FAAHP1
0.000
0.022


cg04580151
1
46916419
LINC01398
0.000
0.086


cg00576267
1
47649505
PDZK1IP1
0.000
0.079


cg15187606
1
47656853
PDZK1IP1
0.000
0.049


cg05363714
1
53191922
ZYG11B
0.000
0.046


cg10905858
1
53778725
LRP8
0.000
0.039


cg12794131
1
55024844
ACOT11
0.000
0.072


cg27489963
1
55512024
PCSK9
0.000
0.069


cg14948611
1
60237371
LOC101926944
0.000
0.048


cg24789365
1
89240187
PKN2
0.000
0.082


cg13901960
1
95492794
ALG14
0.000
0.043


cg16456816
1
99337082

0.000
0.060


cg13311687
1
110441779

0.000
0.078


cg15583818
1
110594341
STRIP1
0.000
0.081


cg15760451
1
110637295
LINC01397
0.000
0.029


cg13397141
1
111984145
WDR77
0.000
0.060


cg17253459
1
114522670
OLFML3
0.000
0.087


cg13677599
1
115602138
TSPAN2
0.000
0.077


cg19730691
1
119526437
TBX15
0.000
0.078


cg07591395
1
145507220
RBM8A
0.000
0.045


cg19169619
1
150459535
TARS2
0.000
0.014


cg16370685
1
150899163
SETDB1
0.000
0.000


cg07422880
1
150945861
LASS2
0.000
0.079


cg18061756
1
151011219
BNIPL
0.000
0.032


cg24617567
1
152849773
SMCP
0.001
0.090


cg04920527
1
153505651

0.000
0.052


cg21140456
1
153525741

0.000
0.079


cg12580687
1
153540839

0.000
0.064


cg19813935
1
153959405
RAB13
0.000
0.048


cg09993970
1
154748379
KCNN3
0.000
0.048


cg08917809
1
155090566

0.001
0.094


cg10180169
1
155171810
THBS3
0.000
0.036


cg14714694
1
156502870
IQGAP3
0.000
0.072


cg11516676
1
156704146
RRNAD1
0.000
0.084


cg00353407
1
156974025
ARHGEF11
0.001
0.093


cg18302806
1
157803021
CD5L
0.000
0.031


cg08390254
1
160084779
ATP1A2
0.000
0.055


cg00862398
1
161042063
PVRL4
0.000
0.070


cg03166324
1
161059535
PVRL4:
0.001
0.100


cg26890123
1
169822076
SCYL3; SCYL3; C1orf112
0.000
0.043


cg23662453
1
170043658
KIFAP3
0.000
0.002


cg13922160
1
178340780
RASAL2
0.000
0.023


cg21295186
1
178460074

0.000
0.079


cg12711965
1
179736289
FAM163A
0.000
0.074


cg10146186
1
179781957
FAM163A
0.000
0.051


cg13743523
1
180189180

0.001
0.089


cg07752015
1
183079647
LAMC1
0.000
0.084


cg12910466
1
183535731
NCF2
0.000
0.009


cg25605307
1
183965312
GLT25D2
0.000
0.072


cg16721191
1
185703526
HMCN1
0.000
0.020


cg05638359
1
190444387
FAM5C
0.000
0.017


cg02937748
1
201235006

0.001
0.088


cg14277643
1
201298617
PKP1
0.000
0.064


cg15989013
1
202549053
PPP1R12B
0.000
0.039


cg04874358
1
204246130
PLEKHA6
0.000
0.086


cg16045750
1
204532895

0.000
0.078


cg17917542
1
205473677
CDK18
0.000
0.073


cg13354084
1
205631862
SLC45A3
0.000
0.059


cg21823119
1
209601066
LOC642587
0.001
0.094


cg14356870
1
219156612
MIR548F3
0.000
0.060


cg21597712
1
219586193

0.000
0.069


cg00792251
1
223888905
CAPN2
0.000
0.049


cg11258640
1
230529823
PGBD5
0.000
0.015


cg00522450
1
234541778
TARBP1
0.001
0.090


cg02529577
1
236331998
GPR137B
0.001
0.093


cg04751986
1
247455300

0.000
0.031


cg20888499
2
426252

0.000
0.059


cg11985116
2
1567042

0.001
0.098


cg03758732
2
2030712
MYT1L
0.000
0.036


cg02377589
2
2734065

0.000
0.052


cg05226443
2
3039776
LINCO1250
0.000
0.019


cg25883141
2
3689356
COLEC11
0.000
0.057


cg16843994
2
4704518

0.000
0.059


cg02858338
2
9813953

0.000
0.031


cg09171253
2
10567147
HPCAL1
0.000
0.041


cg20870561
2
10728572
NOL10
0.000
0.065


cg01085830
2
11774354
GREB1
0.001
0.091


cg22973641
2
17783309
VSNL1
0.001
0.096


cg21927971
2
17837235
VSNL1
0.000
0.064


cg27483367
2
20057796

0.000
0.038


cg01206183
2
23870322
KLHL29
0.000
0.071


cg11288327
2
24239137
MFSD2B
0.000
0.059


cg15843262
2
25473895
DNMT3A
0.000
0.007


cg22829909
2
26189722
KIF3C
0.000
0.043


cg18026309
2
26683651
OTOF
0.000
0.036


cg00216589
2
26897342

0.001
0.090


cg15117008
2
27482048
SLC30A3
0.000
0.058


cg05484376
2
27715224
FNDC4
0.000
0.065


cg18063937
2
38494762

0.000
0.051


cg14064229
2
42588497
COX7A2L
0.000
0.073


cg27433381
2
43319596

0.001
0.094


cg14398243
2
46385031
PRKCE
0.000
0.082


cg08110015
2
47072833
LINCO1119
0.000
0.025


cg21148491
2
55324083

0.001
0.090


cg14208090
2
58171085
VRK2
0.000
0.062


cg05625330
2
60522569

0.000
0.086


cg15603846
2
65808546

0.000
0.072


cg16279589
2
69747475
SNORA36C; AAK1
0.000
0.020


cg24682412
2
70190193
ASPRV1; PCBP1-AS1
0.000
0.052


cg02848551
2
70409678
C2orf42
0.001
0.099


cg02002719
2
70520039
SNRPG
0.000
0.068


cg18749055
2
70823641

0.000
0.033


cg27183962
2
72106538

0.000
0.079


cg16893679
2
74455047
SLC4A5
0.000
0.045


cg27004195
2
79866085
CTNNA2
0.000
0.057


cg06136483
2
85787401
GGCX
0.000
0.076


cg10567718
2
85878529

0.001
0.094


cg13650484
2
95945517
PROM2
0.000
0.017


cg02862405
2
96944524
SNRNP200
0.001
0.093


cg02764361
2
97361073
FER1L5
0.001
0.089


cg15149655
2
98703698
VWA3B
0.000
0.012


cg14087319
2
99013128
CNGA3
0.000
0.079


cg22162422
2
100634259
AFF3
0.000
0.061


cg00521010
2
106487580
NCK2
0.000
0.080


cg26221826
2
107130238

0.000
0.086


cg23055617
2
109223691
LIMS1
0.000
0.065


cg01987309
2
112199176
MIR4435-2HG
0.001
0.089


cg23215929
2
112641879
ANAPC1
0.000
0.065


cg06716567
2
118576882
DDX18
0.001
0.094


cg00460795
2
119998072
STEAP3
0.000
0.033


cg07390459
2
121582002
GLI2
0.000
0.086


cg07622245
2
121742395
GLI2
0.000
0.028


cg00544605
2
121838313

0.000
0.080


cg18555161
2
122055006

0.001
0.099


cg26548729
2
127401321

0.000
0.074


cg14183136
2
127736736

0.000
0.060


cg11836155
2
127814123
BIN1
0.000
0.076


cg07455051
2
128051853
ERCC3
0.001
0.099


cg02669112
2
128738794
SAP130
0.000
0.067


cg02837645
2
129142654

0.000
0.086


cg27022372
2
130986904

0.000
0.043


cg27467195
2
131103695
IMP4
0.001
0.092


cg23176577
2
133010653
NCRNA00164
0.000
0.082


cg14923640
2
139537826
NXPH2
0.000
0.009


cg20883174
2
145260010
ZEB2
0.000
0.055


cg09879168
2
149893581
LYPD6B
0.001
0.096


cg18337643
2
152049905

0.001
0.097


cg02321620
2
173908893
RAPGEF4
0.000
0.071


cg17160437
2
175206075

0.000
0.018


cg19979107
2
175351956
GPR155
0.000
0.000


cg19447671
2
176032513
ATF2; MIR933
0.000
0.032


cg11261698
2
176995079
HOXD8
0.000
0.041


cg03178820
2
190627986
OSGEPL1
0.000
0.010


cg10462618
2
192503258

0.000
0.084


cg18592701
2
203129297
NOP58
0.000
0.082


cg06376196
2
218904164
RUFY4
0.001
0.099


cg25054180
2
219885839
CCDC108
0.000
0.084


cg26032914
2
231036542
SP110
0.001
0.095


cg16307753
2
232235204
ARMC9
0.000
0.056


cg06735243
2
233766658
NGEF
0.000
0.087


cg15923928
2
234122237

0.000
0.042


cg21143225
2
236239982

0.000
0.064


cg03167812
2
236970809
AGAP1
0.001
0.099


cg05763915
2
238487087
RAB17
0.000
0.050


cg13094681
2
239331631

0.000
0.079


cg14380745
2
239342363
ASB1
0.000
0.062


cg26598840
2
239354902
ASB1
0.001
0.092


cg09581663
2
239628381

0.000
0.062


cg12303103
2
239847901
FLI43879
0.000
0.060


cg26199631
2
239924551

0.000
0.074


cg14653043
2
240010264
HDAC4
0.000
0.087


cg20262764
2
241465215
ANKMY1
0.000
0.017


cg21670983
2
242799460
PDCD1
0.001
0.090


cg21545052
3
9055203
SRGAP3
0.000
0.013


cg21413133
3
10400395
ATP2B2
0.001
0.094


cg17606932
3
10447086
ATP2B2
0.000
0.045


cg18785585
3
10569124

0.000
0.085


cg21993298
3
11609685
VGLL4
0.000
0.057


cg05881786
3
13262770

0.000
0.068


cg04854505
3
13634590
FBLN2
0.000
0.076


cg17148597
3
13635351
FBLN2
0.000
0.077


cg07137228
3
13684292

0.000
0.029


cg11099600
3
14558454
GRIP2
0.000
0.015


cg15152946
3
15108103
MRPS25
0.000
0.064


cg04787571
3
31744108
OSBPL10
0.000
0.052


cg13623862
3
33122628
GLB1
0.001
0.099


cg21825149
3
34118619

0.000
0.011


cg10084398
3
35822275
ARPP21;
0.001
0.092


cg12355794
3
38319757
SLC22A13
0.000
0.067


cg10385078
3
42450219
LYZL4
0.000
0.079


cg10809309
3
42555433
VIPR1
0.000
0.016


cg16618282
3
47018402
CCDC12
0.000
0.067


cg18169589
3
47049133
NBEAL2
0.000
0.043


cg12259140
3
48599829
UCN2
0.000
0.012


cg24522183
3
49136601
QARS
0.000
0.083


cg13164345
3
49251622
CCDC36
0.000
0.070


cg10797410
3
51430023
RBM15B
0.001
0.091


cg20400194
3
52209375

0.000
0.080


cg13104454
3
52555272
STAB1
0.000
0.025


cg11126497
3
52558566
NT5DC2
0.000
0.062


cg18115813
3
52856772
ITIH4-AS1; ITIH4; ITIH4
0.000
0.017


cg22151200
3
53781986
CACNA1D
0.000
0.009


cg14794915
3
57933977

0.001
0.098


cg17454740
3
58599124
FAM107A
0.001
0.095


cg00440049
3
59087939

0.000
0.065


cg05526341
3
66489362
LRIG1
0.000
0.082


cg10143842
3
88198517
C3orf38
0.001
0.096


cg24029436
3
88199835
C3orf38
0.000
0.018


cg08765638
3
98460330
ST3GAL6
0.001
0.096


cg16139664
3
101405661
RPL24
0.000
0.020


cg18823062
3
112998395
BOC
0.000
0.067


cg24314608
3
113431267

0.000
0.037


cg12431891
3
114958699

0.000
0.008


cg17198917
3
119381218

0.000
0.050


cg24124753
3
120461562
GTF2E1; GTF2E1; RABL3
0.000
0.065


cg11181458
3
122227008
KPNA1
0.000
0.068


cg06461649
3
122862913
PDIA5
0.001
0.091


cg25714057
3
123139160
ADCY5
0.000
0.076


cg11154004
3
123412055
MYLK
0.000
0.058


cg20230305
3
123418791
MYLK
0.000
0.028


cg12397269
3
125790417
SLC41A3
0.000
0.017


cg12813547
3
126219712
UROC1
0.001
0.091


cg21659425
3
126277078
C3orf22
0.000
0.004


cg25453277
3
127371584
PODXL2
0.001
0.098


cg14750757
3
127506604
MGLL
0.000
0.057


cg08668199
3
127795571

0.000
0.017


cg16378517
3
128427669

0.000
0.038


cg19971049
3
128841434
RAB43; ISY1-RAB43
0.000
0.048


cg12293095
3
132324571
ACAD11
0.000
0.076


cg00914990
3
132360928
ACAD11; NPHP3-ACAD11
0.001
0.098


cg21647473
3
136581035
NCK1
0.000
0.046


cg23008404
3
137728997
CLDN18
0.000
0.076


cg16364085
3
138043140
TXNDC6
0.000
0.067


cg15579567
3
138952482
PISRT1
0.000
0.053


cg16171849
3
139254260
RBP1
0.000
0.069


cg27385501
3
149526163

0.000
0.046


cg27041566
3
150005802
LINC01214
0.000
0.055


cg19467332
3
150896383
MED12L
0.000
0.077


cg22045243
3
155460971

0.001
0.097


cg25516778
3
172314944

0.000
0.046


cg12479512
3
175987813

0.001
0.097


cg06830098
3
176980527

0.000
0.031


cg24458422
3
179066376
MFN1
0.000
0.062


cg01876619
3
183971267
ECE2
0.000
0.071


cg13752587
3
184019325
PSMD2
0.000
0.086


cg17332384
3
187722647

0.000
0.081


cg16948320
3
192958383
HRASLS; MGC2889
0.000
0.016


cg17055143
3
194750373

0.001
0.095


cg23195322
3
194935437
XXYLT1
0.000
0.053


cg11387368
3
195491945
MUC4
0.000
0.024


cg16185365
3
196230308
RNF168
0.000
0.050


cg01635960
3
197232776

0.001
0.099


cg19797956
4
879432
GAK
0.000
0.051


cg15639776
4
965630
DGKQ
0.001
0.096


cg04145890
4
1007657
FGFRL1
0.000
0.049


cg04117546
4
1378049
UVSSA
0.000
0.079


cg23450578
4
1950878
WHSC1
0.000
0.038


cg09900250
4
2160995
POLN
0.001
0.099


cg09299732
4
3807421

0.000
0.058


cg16353738
4
6181985
JAKMIP1
0.000
0.079


cg12344589
4
7789970
AFAP1
0.000
0.058


cg17674418
4
8304222
HTRA3
0.001
0.096


cg09160759
4
8387536
ACOX3
0.000
0.038


cg16270231
4
8468878
C4orf23
0.000
0.073


cg00575844
4
8549980

0.000
0.073


cg11364056
4
15985958
PROM1
0.000
0.047


cg27159689
4
26805168

0.000
0.067


cg22522728
4
40226021
RHOH
0.000
0.084


cg16732678
4
40337001
CHRNA9
0.001
0.089


cg27357640
4
40910223
APBB2
0.000
0.049


cg02376806
4
52883875
LRRC66
0.000
0.057


cg15083003
4
54366918
LNX1-AS1; LNX1; LNX1
0.001
0.096


cg25181751
4
55405864

0.000
0.081


cg17074816
4
68410573
CENPC1
0.000
0.018


cg22533356
4
82415477

0.000
0.024


cg05804650
4
84613381

0.000
0.077


cg05181212
4
87230737
MAPK10
0.000
0.066


cg20558008
4
89153457
ABCG2
0.000
0.069


cg14155027
4
106888581
NPNT
0.000
0.049


cg19839049
4
153913634

0.000
0.067


cg24878607
4
153926932

0.000
0.067


cg10633772
4
159122850

0.000
0.042


cg12105042
4
160150415

0.000
0.032


cg17914657
4
183659641
TENM3
0.001
0.090


cg22654504
4
183717025
ODZ3
0.000
0.044


cg10868030
5
192650
LRRC14B
0.000
0.041


cg12207033
5
405488
AHRR; LOC100310782
0.000
0.015


cg22444512
5
1804575
NDUFS6
0.001
0.095


cg11779204
5
10992621
CTNND2
0.000
0.086


cg00290106
5
17187967
LOC285696
0.000
0.069


cg09699472
5
34919959
BRIX1; BRIX1
0.000
0.083


cg11012946
5
60956530
C5orf64
0.000
0.073


cg09575568
5
63986889
FAM159B
0.000
0.029


cg11140679
5
66038055
MAST4
0.000
0.011


cg15866432
5
67337284

0.000
0.040


cg24375148
5
68572573
CDK7
0.000
0.001


cg25694966
5
76788427
WDR41
0.000
0.082


cg16756660
5
87570655
TMEM161B-AS1
0.000
0.043


cg05033239
5
90458832
GPR98
0.000
0.026


cg04452110
5
95297792
ELL2
0.000
0.012


cg11691164
5
102982781

0.001
0.099


cg27573576
5
108123898
FER
0.001
0.099


cg01390786
5
118855640
HSD17B4
0.000
0.022


cg26503344
5
123333895

0.000
0.024


cg12445693
5
126111951
LMNB1
0.000
0.013


cg11086697
5
131395849
I13
0.000
0.058


cg11745021
5
131879416
IL5
0.000
0.014


cg01933710
5
132596864
FSTL4
0.000
0.039


cg21748497
5
132624539
FSTL4
0.000
0.056


cg08409972
5
132821959
FSTL4
0.001
0.098


cg15395101
5
133203518

0.000
0.043


cg05093612
5
133249137
WSPAR
0.000
0.055


cg00224174
5
133300959
C5orf15
0.000
0.052


cg11323986
5
134553425
C5orf66
0.000
0.082


cg03770746
5
137865128
ETF1
0.001
0.087


cg09469111
5
138731441
LOC389333
0.000
0.048


cg23979508
5
139248568
NRG2
0.000
0.079


cg10916398
5
141591592

0.000
0.066


cg08089927
5
148844921

0.001
0.092


cg27219926
5
149026436

0.000
0.078


cg09757689
5
149862429
LOC102546298
0.000
0.077


cg04474247
5
149925323
NDST1
0.000
0.036


cg01684706
5
150585095
CCDC69
0.000
0.043


cg09628766
5
151202431
GLRA1
0.000
0.078


cg06384579
5
152825342

0.000
0.059


cg04805363
5
156681140
ITK
0.000
0.067


cg10548700
5
157158263
THG1L
0.000
0.052


cg19622345
5
161923051

0.000
0.056


cg12491223
5
169537111

0.000
0.045


cg17343122
5
170175936

0.000
0.085


cg00059880
5
171761658
SH3PXD2B
0.000
0.049


cg27326876
5
172098275
NEURL1B
0.000
0.078


cg05647567
5
172222550

0.000
0.074


cg16117125
5
172258491

0.000
0.074


cg09575258
5
175084718
HRH2
0.001
0.091


cg05292309
5
175618250
LOC643201
0.000
0.063


cg00635082
5
175619368

0.000
0.069


cg11186396
5
175722680
SIMC1
0.000
0.025


cg08544616
5
176013578
CDHR2
0.000
0.083


cg16728520
5
176070349
EIF4E1B
0.000
0.052


cg11186754
5
176919655
PDLIM7
0.000
0.030


cg01551388
5
176958396
FAM193B
0.000
0.011


cg24378020
5
178749602
ADAMTS2
0.001
0.094


cg03793536
5
179078154

0.000
0.063


cg25368148
6
191117
LOC285766
0.000
0.032


cg01110751
6
3757855

0.000
0.074


cg01724517
6
3933058

0.000
0.040


cg22444736
6
12039945
HIVEP1
0.000
0.085


cg24348488
6
13681972
RANBP9
0.001
0.096


cg08586066
6
16238667
GMPR
0.000
0.056


cg07625712
6
20653535
CDKAL1
0.000
0.010


cg20790163
6
21045531
CDKAL1
0.000
0.085


cg07773344
6
23532383

0.001
0.096


cg21297167
6
24720423
C6orf62
0.000
0.000


cg01244650
6
27101633
HIST1H2BJ
0.001
0.098


cg23977256
6
30123461
TRIM10
0.000
0.077


cg20417529
6
31474262
MICB
0.000
0.069


cg17468317
6
31620788
BAT3
0.000
0.029


cg03570253
6
31651411

0.000
0.068


cg07643404
6
31833917
SLC44A4
0.000
0.082


cg25981875
6
31860696
EHMT2
0.001
0.091


cg02105247
6
31936301
SKIV2L
0.000
0.048


cg20671150
6
32172151
NOTCH4
0.001
0.093


cg25749212
6
32938950
BRD2
0.000
0.026


cg04586502
6
33264356
RGL2
0.000
0.074


cg24354924
6
33288680
DAXX
0.000
0.085


cg20871277
6
33656548
ITPR3
0.001
0.093


cg08799655
6
35183390
SCUBE3
0.000
0.057


cg22421503
6
36623153

0.000
0.073


cg20318340
6
36684894
RAB44
0.000
0.056


cg01545076
6
36760497
CPNE5
0.000
0.057


cg21900381
6
36970913

0.000
0.077


cg10553343
6
40360437
LRFN2
0.000
0.061


cg12855851
6
41715185
PGC
0.000
0.059


cg21834222
6
41742447
FRS3
0.000
0.079


cg01632455
6
42056303

0.001
0.092


cg14308028
6
42334807
TRERF1
0.001
0.090


cg22907985
6
73128547

0.000
0.058


cg11887083
6
75965559
TMEM30A
0.000
0.073


cg19570102
6
83906123
RWDD2A
0.000
0.077


cg07970821
6
90312248
ANKRD6
0.000
0.057


cg20679517
6
110966949
CDK19
0.000
0.010


cg26501154
6
113966694

0.000
0.068


cg13028856
6
114147161

0.000
0.078


cg15002362
6
129796899
LAMA2
0.000
0.082


cg04055963
6
134521563
SGK1
0.000
0.050


cg26331275
6
136657241

0.000
0.064


cg12177643
6
136789152
MAP7
0.000
0.076


cg08279213
6
138684185

0.001
0.097


cg10580604
6
139483724
HECA
0.000
0.070


cg12189193
6
152003453

0.000
0.061


cg20420329
6
156403576

0.000
0.063


cg23389785
6
157892722
ZDHHC14
0.000
0.069


cg10445915
6
158194559

0.000
0.049


cg25395087
6
158409885
SYNJ2
0.000
0.028


cg18201505
6
159052446
TMEM181
0.001
0.099


cg01059428
6
159487759

0.000
0.058


cg25034944
6
161575455
AGPAT4
0.001
0.090


cg04462132
6
161860635
PARK2
0.000
0.040


cg01417281
6
166368901
LINC00473
0.000
0.073


cg07237089
6
167280873

0.000
0.043


cg12874372
6
167707525
UNC93A
0.001
0.093


cg15393304
6
168898334
SMOC2
0.000
0.062


cg11554153
7
209165
FAM20C
0.000
0.052


cg00308560
7
216899
FAM20C
0.000
0.046


cg24921614
7
919082
C7orf20
0.001
0.091


cg24585714
7
1191771

0.000
0.052


cg02634628
7
1308420

0.000
0.079


cg05061122
7
1737088

0.001
0.090


cg08551333
7
1894025
MAD1L1
0.000
0.080


cg12560421
7
2656527

0.000
0.079


cg08936068
7
2916740

0.000
0.077


cg14181552
7
17071794

0.000
0.028


cg11448063
7
26393633
SNX10
0.000
0.063


cg23096130
7
26530203
LOC441204
0.000
0.021


cg18395623
7
29986771
SCRN1
0.000
0.062


cg10693631
7
37417039
ELMO1
0.000
0.060


cg04944945
7
37888557
NME8
0.000
0.081


cg01726890
7
38370874

0.000
0.053


cg21181355
7
44147676
AEBP1
0.000
0.064


cg00263358
7
45120286
NACAD
0.000
0.079


cg06713098
7
45960367
IGFBP3
0.000
0.012


cg11977778
7
47394414
TNS3
0.000
0.070


cg08414403
7
47446450
TNS3
0.001
0.097


cg03090803
7
47447988
TNS3
0.000
0.065


cg07534757
7
47769813

0.001
0.099


cg12908660
7
50536269
DDC
0.000
0.021


cg00154727
7
50863804

0.000
0.062


cg25950757
7
50905796

0.000
0.060


cg01780245
7
55341360

0.000
0.060


cg06573629
7
55507738

0.000
0.067


cg17576657
7
65448066
GUSB
0.000
0.065


cg12184219
7
71510157
CALN1
0.000
0.052


cg26301927
7
73770843
CLIP2
0.000
0.079


cg27615293
7
74197625
NCF1
0.001
0.098


cg05879075
7
76030355
ZP3; SRCRB4D
0.000
0.072


cg05802532
7
77325208
RSBN1L
0.000
0.021


cg10582407
7
79135972

0.001
0.095


cg24728898
7
94136384

0.001
0.091


cg03716590
7
95435309
DYNC1I1
0.001
0.092


cg02258139
7
97841513
BHLHA15
0.001
0.089


cg03092772
7
97858152
TECPR1
0.000
0.028


cg15807655
7
98869778
MYH16
0.000
0.071


cg01025690
7
107592642
LAMB1
0.000
0.074


cg01493038
7
107818639
NRCAM
0.000
0.083


cg23698329
7
110693055
IMMP2L
0.000
0.050


cg07697895
7
116963259
WNT2
0.000
0.006


cg10485664
7
121946036
FEZF1
0.000
0.022


cg00307737
7
124402490
GPR37
0.000
0.064


cg10323187
7
128458958
CCDC136
0.001
0.089


cg24606273
7
128492991
FLNC
0.000
0.075


cg03914913
7
130419754
KLF14
0.000
0.004


cg25778497
7
134932580
STRA8
0.000
0.051


cg18463174
7
138794585
ZC3HAV1
0.000
0.066


cg24109934
7
139138155
KLRG2
0.001
0.096


cg17902962
7
139261479
HIPK2
0.001
0.098


cg13487431
7
139521045
TBXAS1
0.000
0.062


cg24444878
7
142573429
TRPV6
0.001
0.096


cg03334207
7
149306260
ZNF767P
0.000
0.078


cg02393907
7
150011063
ACTR3C
0.000
0.030


cg01676938
7
150631584

0.000
0.041


cg00252814
7
150647757
KCNH2
0.000
0.061


cg05472078
7
150768939
SLC4A2
0.000
0.050


cg00920126
7
151091880
WDR86
0.000
0.056


cg09499965
7
151220664

0.000
0.045


cg27376589
7
151386845
PRKAG2
0.000
0.083


cg24131847
8
343211

0.000
0.031


cg07163719
8
652755
ERICH1
0.000
0.059


cg25624690
8
1080669

0.000
0.041


cg13367644
8
1444085

0.000
0.075


cg13725636
8
1471446
DLGAP2
0.000
0.072


cg26763877
8
4851751
CSMD1
0.000
0.012


cg04409932
8
9911669
MSRA
0.001
0.099


cg07353255
8
11224510
C8orf12; TDH
0.000
0.072


cg10343719
8
11403233
BLK
0.000
0.069


cg13580419
8
18542074
PSD3
0.000
0.062


cg14834091
8
21554072
GFRA2
0.000
0.047


cg21054655
8
22064991
BMP1
0.000
0.060


cg23675837
8
22564482

0.000
0.049


cg23602285
8
22865207
RHOBTB2
0.000
0.069


cg13207664
8
27188925
PTK2B
0.000
0.058


cg27566516
8
27845877
SCARA5
0.000
0.013


cg00781782
8
28195649
PNOC
0.000
0.058


cg04002325
8
30891687
PURG; PURG; WRN
0.000
0.028


cg07866399
8
39771219
IDO1
0.000
0.083


cg05746500
8
40790462

0.000
0.059


cg19993819
8
41508117

0.000
0.022


cg05234958
8
41557710
ANK1
0.000
0.085


cg22653915
8
52722023
PXDNL
0.000
0.082


cg13688375
8
56073807
XKR4
0.000
0.071


cg15711016
8
61193066
CA8
0.000
0.015


cg18947117
8
70635110
SLCO5A1
0.000
0.042


cg23706108
8
74475489
STAU2
0.001
0.091


cg14556425
8
79721111

0.000
0.062


cg26107736
8
98597206

0.000
0.021


cg13029807
8
103755591

0.000
0.037


cg07005767
8
107782538
ABRA
0.000
0.034


cg02923628
8
119132736

0.000
0.045


cg14409958
8
120651652
ENPP2
0.000
0.041


cg25553110
8
123964690
ZHX2
0.000
0.085


cg26816720
8
125676541
MTSS1
0.000
0.078


cg26707981
8
126678212

0.000
0.071


cg09851121
8
136465595

0.000
0.013


cg06330760
8
142305873

0.000
0.065


cg13829887
8
142323725

0.000
0.025


cg09141604
8
142325014

0.001
0.094


cg07456135
8
142662408

0.000
0.024


cg01288167
8
143535437

0.000
0.087


cg17999031
8
144644150
GSDMD
0.000
0.077


cg17944171
8
144826596
FAM83H-AS1
0.000
0.043


cg13699567
8
145058808
PARP10
0.000
0.038


cg03214876
8
145166631
KIAA1875
0.000
0.006


cg11202914
8
145172221
KIAA1875
0.000
0.010


cg17965359
8
145577099
CBORFK29
0.000
0.047


cg23075260
8
145617435
ADCK5
0.001
0.100


cg09829265
8
145925704

0.001
0.095


cg17960268
9
179409
CBWD1
0.000
0.068


cg16829752
9
2158492
SMARCA2
0.000
0.004


cg09134409
9
4726430
AK3
0.000
0.045


cg11810416
9
16112066

0.000
0.050


cg10815995
9
18777555
ADAMTSL1
0.001
0.099


cg02294872
9
27165996
TEK
0.001
0.093


cg14300943
9
27534289

0.000
0.023


cg01178535
9
34654588
IL11RA
0.001
0.088


cg23788525
9
35557933
RUSC2
0.000
0.065


cg13701768
9
36882152
PAX5
0.000
0.061


cg14184130
9
38437270

0.000
0.086


cg09357749
9
79073813
GCNT1
0.000
0.014


cg06977775
9
90452300

0.001
0.092


cg02030115
9
92043285
SEMA4D
0.000
0.049


cg04756155
9
92449750

0.000
0.081


cg14615893
9
94572995
ROR2
0.000
0.052


cg15357165
9
97968565
FANCC
0.000
0.074


cg06612480
9
100890738
CORO2A
0.000
0.027


cg05868019
9
107330414
OR13C8
0.000
0.086


cg17140224
9
107628303
ABCA1
0.000
0.073


cg04043023
9
107647973
ABCA1
0.000
0.066


cg16132315
9
107662475
ABCA1
0.001
0.089


cg14767547
9
114287214
ZNF483
0.001
0.088


cg03985630
9
116811954
ZNF618
0.000
0.025


cg06635413
9
124879125

0.000
0.057


cg09478960
9
129963518
RALGPS1
0.000
0.049


cg09840374
9
130241598
LRSAM1
0.000
0.027


cg13464337
9
130699468
DPM2
0.001
0.096


cg09657446
9
130710188
FAM102A
0.000
0.036


cg14299800
9
132564053
TOR1B
0.000
0.068


cg17389692
9
133271811
HMCN2
0.000
0.079


cg13810489
9
133888939
LAMC3
0.001
0.088


cg08461301
9
134208328

0.000
0.044


cg13396858
9
134249466

0.000
0.018


cg09224765
9
134346313
PRRC2B
0.001
0.091


cg21168781
9
135073345
NING2
0.000
0.065


cg14856224
9
136100626

0.000
0.033


cg10375759
9
136758213
VAV2; VAV2
0.000
0.022


cg13033964
9
137634551
COL5A1
0.000
0.025


cg14356362
9
137693277
COL5A1
0.000
0.078


cg13714791
9
137694578
COL5A1
0.001
0.096


cg06553115
9
138399337
LOC101928525
0.000
0.071


cg14354024
9
138837667
UBAC1
0.000
0.081


cg22868971
9
139262548
CARD9
0.000
0.080


cg10434996
9
139633680
LCN10
0.000
0.063


cg00058235
9
139745287
PHPT1
0.000
0.043


cg13907059
9
140002893
MAN1B1
0.001
0.099


cg08285997
9
140946602
CACNA1B
0.000
0.065


cg16324184
10
3165537
PFKP
0.000
0.043


cg16819272
10
3212304
PITRM1
0.000
0.063


cg18099749
10
3415236

0.000
0.074


cg10241132
10
5568420
CALML3-AS1
0.000
0.081


cg10516545
10
5983670

0.000
0.032


cg15166718
10
6066525
IL2RA
0.001
0.099


cg12097011
10
7145290

0.000
0.086


cg25218322
10
8446838

0.000
0.066


cg11731173
10
11219043
CELF2
0.000
0.081


cg25363704
10
11691859

0.000
0.079


cg27650996
10
11942374

0.000
0.043


cg06549547
10
13341008
PHYH
0.000
0.061


cg15881990
10
13628544
PRPF18
0.000
0.073


cg13346872
10
29395076

0.000
0.077


cg24446378
10
30589548

0.000
0.038


cg00177866
10
30645237

0.000
0.035


cg00798781
10
32661244
EPC1; LOC102031319
0.000
0.049


cg10068572
10
35687029
CCNY
0.001
0.090


cg17622901
10
43790808

0.001
0.093


cg25364726
10
50506317
C10orf71
0.001
0.089


cg16083082
10
51371691
LOC728407; PARG
0.000
0.082


cg15059390
10
65343495
REEP3
0.000
0.062


cg00180093
10
70011219

0.001
0.089


cg25380945
10
73143743

0.000
0.063


cg09427295
10
73155474
CDH23
0.000
0.014


cg14977879
10
73205190
CDH23
0.001
0.095


cg23790296
10
73233854
CDH23
0.000
0.065


cg08391733
10
73271538
CDH23; LOC102723377; CDH23; CDH23; CDH23; CDH2
0.001
0.087


cg14150687
10
73356962
CDH23
0.000
0.008


cg00351526
10
73424392
CDH23;
0.000
0.061


cg03576467
10
75012392
MRPS16
0.000
0.074


cg23432673
10
75549286
KIAA0913
0.000
0.080


cg09998038
10
75654563

0.001
0.094


cg19766004
10
79166230
KCNMA1
0.000
0.083


cg05730301
10
79793430
RPS24
0.000
0.027


cg23123731
10
80161611

0.001
0.092


cg09514351
10
80960123
ZMIZ1
0.000
0.087


cg25577099
10
81141746

0.000
0.079


cg17308012
10
81896880
PLAC9
0.000
0.067


cg17716358
10
82268218
TSPAN14
0.000
0.026


cg12405638
10
82365939
SH2D4B
0.000
0.082


cg06481504
10
86008430
RGR
0.000
0.058


cg18691254
10
89969136

0.000
0.040


cg19045313
10
93804999

0.000
0.084


cg12661092
10
98861029
SLIT1
0.000
0.066


cg22862961
10
99343450
ANKRD2; ANKRD2; DHDPSL; DHDPSL
0.000
0.080


cg04894473
10
100217230
HPSE2
0.000
0.021


cg26847029
10
101989492
CHUK
0.000
0.005


cg24309962
10
101997852
CWF19L1; SNORA12
0.000
0.069


cg24561938
10
102635087

0.001
0.087


cg25723614
10
103602939
KCNIP2
0.000
0.078


cg10911365
10
105827642
COL17A1
0.000
0.082


cg08533748
10
112632164
PDCD4
0.000
0.015


ce23967578
10
114151642
ACSL5
0.000
0.071


cg26017408
10
116161327
AFAP1L2
0.000
0.075


cg27264018
10
120442665
C10orf46
0.000
0.057


cg15665812
10
121170559
GRK5
0.001
0.088


cg18371836
10
122553700

0.000
0.031


cg25347634
10
123438240

0.000
0.049


cg03965739
10
123989839
TACC2
0.000
0.051


cg08564661
10
124133785
PLEKHA1
0.000
0.005


cg19649018
10
131260468

0.001
0.094


cg13250024
10
133954211
JAKMIP3
0.000
0.057


cg02503633
10
134014536
DPYSL4
0.000
0.032


cg24305451
10
134021178
STK32C
0.001
0.091


cg16014906
10
134095321
STK32C
0.000
0.070


cg07733247
10
134222507
PWWP2B
0.000
0.082


cg26890480
10
134279136

0.000
0.077


cg23728819
10
134298663

0.000
0.064


cg17915125
10
134476336
INPP5A
0.000
0.079


cg02999309
10
134502626
INPP5A
0.000
0.021


cg18720533
10
134833372

0.000
0.062


cg12120360
10
135267330
LOC619207
0.000
0.072


cg27349581
11
533756
HRAS
0.000
0.044


cg07339155
11
582126
PHRF1
0.000
0.075


cg12426895
11
799515
SLC25A22; PIDD1; PIDD1
0.000
0.018


cg22101701
11
853761
TSPAN4
0.000
0.082


cg14947609
11
992535
AP2A2
0.000
0.062


cg00554401
11
1618726
HCCA2; KRTAP5-2; LOC338651; KRTAP5-2
0.000
0.049


cg04038671
11
1849581

0.001
0.092


cg01234748
11
2005425
LOC100133545
0.000
0.007


cg20402210
11
2697527
KCNQ1; KCNQ1OT1; KCNQ1
0.001
0.091


cg06102292
11
2818516
KCNQ1
0.000
0.068


cg20716202
11
2925847
SLC22A18; SLC22A18; SLC22A18AS
0.001
0.099


cg09265385
11
3206546

0.000
0.053


cg02680863
11
8724426
ST5
0.000
0.065


cg10822817
11
16897972
PLEKHA7
0.000
0.062


cg23787205
11
17801046
KCNC1
0.000
0.086


cg12010750
11
17803160
KCNC1
0.000
0.069


cg02598777
11
43943763
ALKBH3-AS1
0.000
0.051


cg09436931
11
44026620

0.000
0.058


cg12274663
11
44968719
TP53I11
0.000
0.049


cg12406492
11
45274373
SYT13
0.000
0.046


cg02699635
11
45929519
C11orf94
0.001
0.088


cg00081647
11
46918285
LRP4
0.001
0.094


cg15810884
11
47694478
AGBL2
0.001
0.088


cg18764007
11
58347526
ZFP91; ZFP91-CNTF
0.000
0.006


cg01597257
11
58613262
GLYATL2
0.000
0.016


cg05437902
11
60539411
MS4A15
0.000
0.069


cg26592208
11
61477833
DAGLA
0.000
0.009


cg01638529
11
61687964

0.000
0.070


cg19438894
11
62344563
TUT1
0.000
0.075


cg01455069
11
62382430
ROM1
0.000
0.082


cg00895165
11
63779819
MACROD1
0.000
0.074


cg10089552
11
63796982
MACROD1
0.000
0.079


cg02149740
11
63954507
STIP1
0.000
0.011


cg10905012
11
64374819
NRXN2
0.000
0.068


cg14552860
11
64520531
PYGM
0.000
0.029


cg24803202
11
64658903
MIR194-2; MIR192
0.000
0.065


cg19216917
11
64669677
ATG2A
0.000
0.065


cg07537750
11
64703510
GPHA2
0.000
0.083


cg05941355
11
64707340
C11orf85
0.000
0.041


cg03196265
11
64937570
SPDYC
0.000
0.067


cg22368545
11
65142946
SLC25A45
0.001
0.098


cg08072480
11
65292666
SCYL1
0.001
0.099


cg08940143
11
65637415
EFEMP2
0.000
0.039


cg17403830
11
66051638
CNIH2
0.001
0.094


cg03517146
11
66099716
RIN1
0.001
0.091


cg00161295
11
66323778
ACTN3
0.000
0.074


cg08442334
11
66411384
RBM4
0.000
0.032


cg19391515
11
66626563
PC; PC; LRFN4; PC
0.000
0.032


cg12378449
11
66627382
PC; LRFN4; PC; PC
0.001
0.097


cg20808830
11
67310455

0.000
0.031


cg18192917
11
67401533
TBX10
0.001
0.096


cg11490276
11
67442697
ALDH3B2
0.000
0.072


cg17102428
11
67813255
TCIRG1
0.000
0.034


cg13575943
11
68092381
LRP5
0.000
0.008


cg26379230
11
68905655

0.000
0.058


cg16829322
11
68975031

0.000
0.057


cg12571651
11
69282189

0.001
0.093


cg00248856
11
69464272
CCND1
0.000
0.057


cg12980738
11
69619496

0.000
0.067


cg11213143
11
70279367
CTTN
0.000
0.061


cg22280264
11
70418162
SHANK2
0.000
0.050


cg01764953
11
70814657
SHANK2
0.001
0.089


cg09802835
11
71952131
PHOX2A
0.000
0.082


cg00633110
11
73003205
P2RY6
0.000
0.012


cg18981392
11
74020906
LOC101928580; P4HA3; P4HA3; P4HA3
0.001
0.088


cg03522035
11
76370510
LRRC32
0.000
0.066


cg10650603
11
76415977
GUCY2EP
0.000
0.072


cg19128531
11
81681550
LOC101928989
0.000
0.002


cg09718739
11
85644485

0.000
0.083


cg24528604
11
85778585
PICALM
0.001
0.098


cg05487150
11
86013051
C11orf73
0.000
0.014


cg05730255
11
86184262
ME3
0.000
0.009


cg12252985
11
104817076
CASP4
0.000
0.074


cg22004292
11
111251910

0.000
0.042


cg02051418
11
111700634
ALG9
0.000
0.085


cg06161723
11
116662685
APOA5
0.000
0.054


cg09136129
11
116692084
APOA4
0.000
0.084


cg03249277
11
118021144
SCN4B
0.000
0.061


cg01397450
11
119290776
THY1; THY1; USP2-AS1
0.000
0.058


cg23677767
11
120203545
TMEM136
0.000
0.061


cg07081245
11
120433996

0.000
0.021


cg16515066
11
120500425
GRIK4
0.001
0.090


cg14917395
11
123300849

0.000
0.065


cg26673279
11
124739431
ROBO3
0.000
0.015


cg11990534
11
124931249

0.000
0.087


cg19320967
12
864078
WNK1
0.000
0.022


cg00385011
12
2126189

0.001
0.090


cg03736954
12
6189353
VWF
0.000
0.060


cg11490238
12
6632131
NCAPD2
0.000
0.078


cg08177702
12
6997762

0.000
0.067


cg08718119
12
9436621
LOC642846
0.000
0.016


cg09757485
12
10022055
CLEC2B
0.000
0.056


cg13354523
12
10251574
CLEC1A
0.000
0.031


cg02335554
12
12715438
DUSP16
0.000
0.002


cg14409850
12
27091377
C12orf11; FGFR1OP2; FGFR1OP2
0.000
0.040


cg09885320
12
27735690
PPFIBP1
0.000
0.080


cg00782323
12
30351139

0.000
0.078


cg12703888
12
38710408
ALG10B
0.000
0.026


cg24533202
12
49581917
TUBA1A
0.000
0.019


cg27104930
12
49983027
FAM186B
0.000
0.052


cg13847622
12
50190961
NCKAP5L
0.001
0.096


cg17059507
12
50318603
LOC101927292
0.000
0.076


cg22504898
12
52294622

0.000
0.033


cg26850673
12
52314950
ACVRL1
0.001
0.093


cg09692277
12
53261087

0.000
0.010


cg21112259
12
53567307
CSAD
0.000
0.085


cg07791427
12
54402704
HOXC8
0.000
0.060


cg10082177
12
56349394
PMEL
0.001
0.088


cg21041100
12
56367818
RAB5B
0.000
0.000


cg11703018
12
70955682
PTPRB
0.000
0.087


cg08385613
12
85429993
LRRIQ1; TSPAN19; TSPAN19
0.001
0.094


cg22950035
12
94332007

0.000
0.076


cg02897450
12
96185064
NTN4
0.000
0.073


cg21051375
12
99037948
IKBIP; APAF1; IKBIP; APAF1; APAF1; APAF1; IKBIP; APAF:
0.000
0.026


cg04892249
12
104203720
NT5DC3
0.000
0.066


cg10522908
12
107689711

0.000
0.072


cg20566284
12
108955004
ISCU; ISCU; ISCU; ISCU; SART3; SART3
0.000
0.047


cg09215928
12
109670206
ACACB
0.000
0.026


cg19482754
12
110224547
TRPV4
0.000
0.022


cg05874111
12
111515117
CUX2
0.001
0.097


cg17042483
12
112122418
ACAD10; ACAD10; BRAP
0.000
0.052


cg26294886
12
116007267

0.000
0.017


cg02764093
12
120241760
CIT
0.000
0.075


cg02725908
12
120637158
RPLP0
0.000
0.022


cg07704595
12
122385443
WDR66
0.000
0.082


cg18538090
12
122684793
LRRC43
0.000
0.071


cg21365130
12
123344410
HIP1R
0.001
0.088


cg07949141
12
123451874
ABCB9
0.000
0.053


cg14078092
12
123463530
ARL6IP4; ARL6IP4; OGFOD2; ARL6IP4; ARL6IP4
0.000
0.066


cg24498219
12
124570724
ZNF664-FAM101A
0.001
0.094


cg25519096
12
125740408

0.000
0.083


cg08663658
12
128512636
CRAT8
0.000
0.043


cg19428683
12
131104528

0.000
0.087


cg00965971
12
131770719

0.001
0.100


cg00163861
12
131981225

0.000
0.036


cg04761414
12
133278889
PXMP2
0.000
0.074


cg19724698
12
133380384
GOLGA3
0.000
0.031


cg18057306
13
24417943
MIPEP
0.000
0.082


cg13733630
13
25691600

0.000
0.021


cg14975400
13
27979795

0.001
0.091


cg25569000
13
30896987

0.000
0.067


cg01250888
13
44544577

0.000
0.061


cg13523771
13
45887892

0.000
0.064


cg14059288
13
47468240
HTR2A
0.000
0.007


cg16048340
13
51219112

0.000
0.054


cg20522046
13
52024792
INTS6
0.000
0.068


cg19363970
13
75936395
TBC1D4
0.000
0.057


cg15305016
13
100070822

0.000
0.071


cg07681478
13
100228706
LINC01039
0.000
0.055


cg25730401
13
112317765

0.000
0.062


cg00627998
13
112837550

0.001
0.093


cg23050971
13
112838022

0.000
0.072


cg05705096
13
113724113
MCF2L
0.001
0.098


cg19577377
13
113742155
MCF2L
0.000
0.072


cg09531041
13
114217456

0.000
0.029


cg10199121
13
114324085
GRK1
0.000
0.043


cg00810334
13
114324491
GRK1
0.000
0.041


cg09306495
14
20927858
TMEM55B
0.001
0.090


cg13718960
14
21271313
RNASE1
0.000
0.036


cg18816426
14
21454954

0.000
0.025


cg16420801
14
23816088
SLC22A17
0.001
0.095


cg10557930
14
23901869
MYH7
0.000
0.073


cg15553096
14
24843161
NFATC4
0.000
0.053


cg11198041
14
35344866
BAZ1A
0.000
0.086


cg12299771
14
50012007

0.000
0.017


cg06988994
14
55058332
SAMD4A
0.000
0.022


cg15632208
14
62331793

0.000
0.082


cg13167470
14
65332362

0.000
0.069


cg05426582
14
65417730
RAB15; RAB15; CHURC1-FNTB; CHURC1-FNTB
0.000
0.062


cg11887721
14
65453398
FNTB
0.001
0.096


cg14588884
14
65603375

0.000
0.053


cg10279433
14
73176084
DPF3
0.001
0.099


cg06479820
14
75783437

0.000
0.025


cg20442390
14
76447458
TGFB3
0.000
0.071


cg10024505
14
76818832

0.000
0.033


cg25558731
14
77031740

0.000
0.037


cg05610985
14
77708039
TMEM63C
0.000
0.067


cg00149346
14
77750833
POMT2
0.001
0.099


cg16324934
14
86088580
FLRT2
0.000
0.038


cg06334095
14
90906698

0.000
0.077


cg20484554
14
91774287
CCDC88C
0.001
0.091


cg17291001
14
95107626
SERPINA13
0.000
0.029


cg09001782
14
95916138
C14orf49
0.000
0.081


cg12257918
14
97098304

0.000
0.079


cg18925366
14
99857143

0.000
0.027


cg05210689
14
100233454

0.000
0.083


cg17008318
14
101175123

0.001
0.099


cg11346901
14
101335283
MIR493
0.000
0.081


cg19945937
14
101341438
MIR665
0.000
0.033


cg18862502
14
101349313
MIR127; RTL1
0.000
0.085


cg20963002
14
101360088
MEG8
0.000
0.081


cg16333587
14
101369826
MEG8
0.000
0.031


cg14125733
14
101421065
SNORD114-5
0.000
0.004


cg12285709
14
102975664
ANKRD9
0.000
0.025


cg15888803
14
103443124
CDC42BPB
0.000
0.063


cg19042785
14
103693269

0.000
0.060


cg05160272
14
105342430
KIAA0284
0.001
0.092


cg11172332
14
105676791
BRF1
0.000
0.021


cg06643002
14
105735797
BRF1
0.000
0.070


cg22143684
15
22956864
CYFIP1
0.001
0.094


cg00121759
15
22997975
CYFIP1
0.000
0.042


cg13938969
15
29409443
APBA2
0.000
0.079


cg13564812
15
32404239
CHRNA7
0.000
0.081


cg01241241
15
33202135
FMN1
0.000
0.038


cg07004500
15
39387875

0.000
0.055


cg04866639
15
41165181
RHOV
0.000
0.027


cg14727480
15
43499430
EPB42
0.001
0.093


cg17834516
15
45751179

0.001
0.099


cg19115132
15
45879518
BLOC1S6
0.001
0.097


cg13600513
15
50555482
HDC
0.000
0.048


cg05456662
15
50716270
USP8
0.001
0.090


cg12372547
15
57128280

0.000
0.022


cg21369592
15
59682427

0.000
0.021


cg02972486
15
59980548
BNIP2
0.000
0.063


cg26144783
15
63188008

0.000
0.030


cg25837909
15
63570396
APH1B
0.000
0.011


cg01542115
15
64163413
MIR422A
0.000
0.046


cg20953462
15
65040591
RBPMS2
0.000
0.042


cg03440636
15
66310728
MEGF11
0.001
0.089


cg12542836
15
66600178
DIS3L
0.000
0.074


cg09874605
15
68123157
LBXCOR1
0.000
0.049


cg02410241
15
68914532
CORO2B
0.000
0.063


cg07446205
15
69310640
NOX5; NOX5; NOX5; NOX5; NOX5; MIR548H4
0.001
0.088


cg06733347
15
72453427
GRAMD2
0.000
0.086


cg12239642
15
72467945
GRAMD2
0.000
0.081


cg11552023
15
73595120
NEO1
0.000
0.005


cg20767181
15
75108412
LMAN1L
0.001
0.098


cg08934372
15
75117069
LMAN1L
0.001
0.099


cg06717289
15
75978121
CSPG4
0.000
0.044


cg19950114
15
77937819
LINGO1-AS1; LINGO1
0.001
0.089


cg08187458
15
78231808

0.000
0.046


cg22972628
15
78403545
CIB2
0.001
0.098


cg11032188
15
80478622
FAH
0.000
0.047


cg11440500
15
80568628
LINC00927
0.000
0.068


cg16097724
15
81198983
CEMIP
0.001
0.093


cg11120516
15
85166096
ZSCAN2
0.000
0.069


cg05809673
15
89669306
ABHD2
0.000
0.058


cg27050750
15
90118483
TICRR
0.001
0.089


cg02598778
15
90286632
WDR93
0.000
0.083


cg04624362
15
90730573
SEMA4B
0.000
0.080


cg10767818
15
90806036

0.000
0.043


cg06613755
15
91538151
PRC1
0.001
0.092


cg12449814
15
91590870

0.000
0.032


cg05869601
15
93587701
RGMA
0.001
0.090


cg07911768
15
99486272
IGF1R
0.001
0.099


cg08086582
15
101604462
LRRK1
0.000
0.077


cg12502805
15
101626310

0.001
0.089


cg08863589
15
101873920
PCSK6
0.000
0.028


cg01127994
16
322773
RGS11
0.000
0.034


cg05409441
16
703822
WDR90
0.000
0.049


cg02814289
16
717213
RHOT2; WDR90
0.000
0.060


cg08531623
16
969293
LMF1
0.000
0.045


cg07073662
16
2129289
TSC2
0.001
0.088


cg10464359
16
3027157
PKMYT1
0.000
0.079


cg13829649
16
3051249

0.000
0.065


cg11723904
16
3724734
TRAP1
0.000
0.073


cg13310919
16
10336708

0.000
0.026


cg21339128
16
11585685

0.000
0.048


cg05272776
16
17498250
XYLT1
0.000
0.057


cg06151984
16
19018938
TMC7
0.000
0.059


cg16089286
16
19884257
GPRC5B
0.001
0.095


cg05213745
16
22308244
POLR3E
0.000
0.016


cg09815776
16
25240081
AQP8
0.000
0.049


cg05130405
16
29298242

0.000
0.043


cg11282846
16
29325117
SNX29P2
0.000
0.055


cg23498806
16
30371145
TBC1D10B
0.000
0.040


cg01796044
16
30941664
FBXL19
0.000
0.059


cg19654612
16
48489741
MIR5095
0.000
0.036


cg16717267
16
50711285
SNX20
0.000
0.082


cg00726470
16
55423418

0.001
0.096


cg08568564
16
57209874
FAM192A
0.000
0.045


cg16128337
16
57804890
KIFC3
0.001
0.094


cg07044938
16
66223243

0.000
0.046


cg17194666
16
66953982
CDH16
0.000
0.070


cg06349754
16
67311653
PLEKHG4
0.001
0.088


cg00264740
16
67841294
RANBP10; TSNAXIP1; TSNAXIP1; TSNAXIP1; TSNAXIP1;
0.000
0.052


cg01108401
16
67914622
EDC4
0.001
0.098


cg19694040
16
70816091
VAC14
0.001
0.093


cg17989884
16
71444299

0.000
0.053


cg02751838
16
75148330
LDHD
0.000
0.078


cg10364362
16
78587911
WWOX
0.000
0.078


cg07388254
16
78910067
WWOX
0.000
0.085


cg03634105
16
79831882
LINC01229
0.000
0.061


cg12750772
16
81694726
CMIP
0.001
0.093


cg14935748
16
83966310

0.000
0.056


cg27471989
16
84326435

0.000
0.082


cg12653343
16
85299537

0.000
0.078


cg12208587
16
85390973

0.001
0.094


cg26528399
16
85753164
C16orf74
0.000
0.081


cg20012849
16
88141152

0.000
0.078


cg00659029
16
88165938

0.000
0.053


cg22589165
16
88597573
ZFPM1
0.001
0.092


cg02393091
16
88945894
CBFA2T3
0.000
0.075


cg00035197
16
88962986
CBFA2T3
0.000
0.051


cg27102297
16
88966903
CBFA2T3
0.001
0.088


cg07243576
16
88973245
CBFA2T3
0.001
0.098


cg01977582
16
88976280
CBFA2T3
0.001
0.094


cg10035270
16
89147095

0.000
0.028


cg05314414
16
89183728
ACSF3
0.000
0.084


cg03558177
16
89307718

0.000
0.020


cg19219936
16
89493189
ANKRD11
0.000
0.080


cg06991019
16
89758707
CDK10
0.001
0.098


cg11496577
16
89960236
TCF25
0.000
0.023


cg11671121
17
95891
RPH3AL
0.001
0.093


cg07385388
17
110138
RPH3AL
0.000
0.050


cg10780683
17
702934
NXN
0.000
0.057


cg27206140
17
727177
NXN
0.000
0.028


cg27345989
17
790735
NXN
0.001
0.091


cg07803836
17
891161

0.001
0.090


cg15043106
17
1349008
CRK
0.000
0.064


cg10111813
17
1664630
SERPINF1
0.000
0.081


cg21004604
17
4378085
SPNS3
0.000
0.062


cg02222103
17
5389592
DERL2; MIS12
0.000
0.049


cg16759952
17
7330658
C17orf74
0.000
0.026


cg00966411
17
7622819
DNAH2
0.000
0.057


cg14954951
17
11171215
SHISA6
0.000
0.064


cg25729060
17
17088577
MPRIP
0.000
0.028


cg05213790
17
17090686
MPRIP
0.000
0.085


cg10656972
17
17299636

0.000
0.029


cg15840442
17
18135824
LLGL1;
0.000
0.053


ce09934977
17
18586148
ZNF286B
0.000
0.029


cg14430629
17
19313529
RNF112
0.000
0.072


cg07520091
17
21341020

0.001
0.093


cg00484695
17
26292504

0.000
0.082


cg10839584
17
26700242
SARM1
0.001
0.096


cg09490396
17
26722947
SARM1
0.001
0.093


cg13726166
17
27403888
TIAF1; MYO18A; MYO18A
0.000
0.084


cg15016405
17
28862198

0.000
0.067


cg01629784
17
29313734
RNF135
0.000
0.053


cg04010582
17
29826080
RAB11FIP4
0.001
0.090


cg05469679
17
29891004

0.000
0.054


cg24984384
17
29901806
MIR365-2
0.001
0.089


cg07778180
17
34641309
CCL4L1
0.000
0.065


cg18658709
17
36052187
HNF1B
0.001
0.090


cg19457603
17
37881102
ERBB2
0.000
0.047


cg25934728
17
39967125
SC65
0.000
0.078


cg03060036
17
40227961

0.000
0.006


cg11744144
17
41003352
AOC3
0.000
0.074


cg13436296
17
41907164
MPP3
0.000
0.087


cg02186756
17
42020846
PPY
0.001
0.095


cg21023447
17
43531077
PLEKHM1
0.000
0.023


cg08929103
17
43860355
CRHR1
0.000
0.065


cg25885883
17
44075753
STH; MAPT; MAPT; MAPT; MAPT; MAPT; MAPT, MAPT; I
0.001
0.096


cg04759704
17
44854190
WNT3
0.000
0.043


cg17807663
17
46622012
HOXB2
0.000
0.085


cg05085809
17
46671083
LOC404266
0.000
0.047


cg17069012
17
48061482

0.001
0.093


cg27604897
17
48266770
COL1A1
0.000
0.036


cg12496363
17
48918089
WFIKKN2
0.000
0.086


cg02661743
17
57057810
PPM1E
0.000
0.032


cg13734314
17
58099793

0.000
0.052


cg10912439
17
58112143

0.000
0.028


cg18528621
17
60885154
MARCH10; MARCH10; MARCH10; MARCH10; MIR548\
0.000
0.086


cg25888914
17
61988667
CSHL1
0.000
0.084


cg25561792
17
62050205
SCN4A
0.001
0.090


cg11823235
17
62066821

0.000
0.063


cg20161080
17
67042439
ABCA9
0.000
0.084


cg17985553
17
69847112

0.000
0.051


cg18911972
17
71259036
CPSF4L
0.000
0.033


cg26688435
17
71267558

0.000
0.020


cg08122603
17
71503723
SDK2
0.000
0.072


cg11875706
17
73639654
RECQL5
0.000
0.055


cg04798684
17
74309056
PRPSAP1
0.000
0.065


cg21579666
17
75306740
SEPT9
0.000
0.085


cg16785556
17
75309501
SEPT9
0.000
0.040


cg02018010
17
76488656
DNAH17-AS1; DNAH17
0.000
0.043


cg25879946
17
77076150
ENGASE
0.000
0.044


cg19673176
17
77116058
HRNBP3
0.000
0.058


cg02488145
17
77757732
CBX2
0.000
0.065


cg09596252
17
78655493
RPTOR
0.000
0.064


cg04136113
17
78668022
RPTOR
0.001
0.100


cg06479607
17
79028769
BAIAP2
0.001
0.093


cg12432526
17
79354702

0.000
0.049


cg21635787
17
79359006
LOC100130370
0.000
0.036


cg23028552
17
79459400

0.000
0.074


cg05479166
17
79609346
TSPAN10
0.001
0.093


cg07959490
17
80112427
CCDC57
0.000
0.079


cg02818912
17
80394113
HEXDC
0.000
0.042


cg18593210
17
81021770

0.001
0.093


cg13279915
18
583805

0.000
0.086


cg05461187
18
725885
YES1
0.000
0.018


cg10386511
18
3903479
DLGAP1
0.001
0.096


cg14834507
18
9648658

0.000
0.063


cg24338716
18
10682340
PIEZO2
0.000
0.082


cg21068078
18
13488504
LDLRAD4
0.001
0.099


cg19272018
18
22002772

0.000
0.044


cg01423277
18
28898092
DSG1
0.000
0.042


cg04545219
18
43938407
RNF165
0.000
0.046


cg23824354
18
45690642

0.001
0.098


cg11891983
18
47018976
RPL17; SNORD58A; SNORD58B; RPL17
0.000
0.055


cg27567880
18
51750162
MBD2; SNORA37; MBD2
0.000
0.003


cg19786503
18
53255978
TCF4
0.000
0.002


cg20060287
18
73233964

0.000
0.074


cg10576150
18
75477668

0.000
0.011


cg12759166
18
77373718

0.001
0.098


cg12495077
18
77530773

0.000
0.035


cg23867721
18
77631069
KCNG2
0.001
0.092


cg12212774
19
1615407
TCF3
0.000
0.025


cg04254103
19
1794380
ATP8B3
0.000
0.062


cg26480358
19
1817630
MIR1909; REXO1
0.000
0.059


cg13643356
19
2202660
DOT1L
0.000
0.079


cg17593330
19
2249032
AMH
0.001
0.088


cg10356204
19
2255744
JSRP1
0.001
0.099


cg16098170
19
2255848
JSRP1
0.000
0.085


cg01270438
19
2764357
SGTA
0.000
0.075


cg16248034
19
3676240
PIP5K1C
0.000
0.083


cg24924294
19
3765308
MRPL54
0.000
0.049


cg09444323
19
4191243
ANKRD24
0.000
0.084


cg13514178
19
4689839
DPP9
0.000
0.071


cg07469449
19
4715647
DPP9
0.001
0.093


cg14010696
19
5119250
KDM4B
0.000
0.078


cg01436279
19
5455638
ZNRF4
0.000
0.087


cg25974922
19
5660924
SAFB
0.000
0.069


cg15143006
19
5825690
NRTN
0.000
0.080


cg22985929
19
6227536
MLLT1
0.000
0.086


cg21221255
19
6241338
MLLT1
0.000
0.017


cg13621184
19
7459697
ARHGEF18
0.000
0.025


cg20234640
19
7767089
FCER2
0.000
0.058


cg09271580
19
8934553
ZNF558
0.000
0.033


cg07996485
19
10255339
DNMT1
0.001
0.088


cg18741277
19
10420441
ZGLP1
0.001
0.099


cg27534974
19
13962320

0.000
0.079


cg19398112
19
14529923
DDX39
0.000
0.006


cg19784382
19
15570664
RASAL3
0.000
0.085


cg16069910
19
17571528
NXNL1
0.000
0.057


cg07847097
19
17837638
MAP1S
0.000
0.023


cg06622080
19
19550225
GATAD2A
0.001
0.089


cg05383947
19
22469242
ZNF729
0.000
0.003


cg02348989
19
31798530
TSHZ3
0.000
0.047


cg10062506
19
33892546
PEPD
0.000
0.071


cg06111534
19
34025181

0.001
0.091


cg16064623
19
36019108
SBSN
0.000
0.071


cg23494026
19
36386940
NFKBID
0.001
0.096


cg26493726
19
36508614
CLIP3
0.000
0.079


cg24070837
19
37108188
ZNF382
0.000
0.017


cg07299871
19
38769156
SPINT2
0.000
0.083


cg03763240
19
39156018
ACTN4
0.000
0.084


cg01470900
19
39369830
RINL; RINL; SIRT2; SIRT2; SIRT2; SIRT2
0.000
0.077


cg04433253
19
41751971
AXL
0.000
0.008


cg17763978
19
42872430
MEGF8
0.000
0.052


cg27198553
19
45207559
CEACAM16
0.000
0.080


cg19317638
19
45542562
SFRS16
0.000
0.062


cg02636834
19
47126783
PTGIR
0.000
0.060


cg25596209
19
47912168
MEIS3
0.000
0.086


cg15086820
19
48967869
KCNJ14
0.000
0.063


cg23092421
19
49253689
FUT1
0.000
0.075


cg07947869
19
50293116
AP2A1
0.001
0.089


cg20459189
19
50419311
IL4I1; IL4I1; IL4I1; IL4I1; NUP62; NUP62; NUP62; NUP62;
0.000
0.069


cg06283292
19
50837988
KCNC3; NAPSB
0.000
0.025


cg00847309
19
51303252
SNORD88A; C19orf48; C19orf48; SNORD88B
0.000
0.062


cg19078129
19
52226440
HAS1
0.001
0.096


cg10379439
19
54609909
NDUFA3
0.000
0.060


cg07223467
19
54703415
RPS9
0.000
0.073


cg25963041
19
57049777
ZFP28
0.000
0.040


cg05181865
19
58570652
ZNF135
0.000
0.034


cg01967510
19
59028492
ZBTB45
0.001
0.096


cg04522915
20
646942
SCRT2
0.000
0.011


cg17437284
20
3686412
SIGLEC1
0.000
0.027


cg09619637
20
4163872
SMOX
0.000
0.086


cg21159961
20
4695736

0.000
0.051


cg17626915
20
5806000
C20orf196
0.000
0.031


cg08727812
20
17728257

0.000
0.060


cg12285945
20
25194912
ENTPD6
0.001
0.088


cg00549758
20
31642282
C20orf185
0.001
0.088


cg21374848
20
35125282
DLGAP4
0.000
0.071


cg09191335
20
35241157
SLA2
0.001
0.088


cg01154911
20
35435852
SOGA1
0.000
0.026


cg12435241
20
36030547
SRC
0.000
0.062


cg00125275
20
36762592
TGM2
0.000
0.067


cg13564967
20
36771794
TGM2
0.000
0.047


cg03844473
20
39652694

0.000
0.079


cg21184415
20
39996039
EMILIN3
0.000
0.017


cg03058247
20
42981229

0.000
0.062


cg23353432
20
44639847
MMP9
0.000
0.014


cg11520058
20
44982508
SLC35C2
0.001
0.096


cg03431585
20
44995633
ELMO2
0.000
0.082


cg09975852
20
46448207

0.000
0.021


cg02482481
20
47004167

0.000
0.068


cg20820688
20
47315305
PREX1
0.000
0.084


cg25373807
20
51879499
TSHZ2
0.000
0.074


cg01433416
20
55264962

0.000
0.073


cg04134555
20
55981417
RBM38
0.000
0.022


cg05028514
20
57032469

0.000
0.048


cg14333666
20
60076649
CDH4
0.000
0.018


cg16132063
20
60636728
TAF4
0.000
0.083


cg09913304
20
61926057
COL20A1
0.000
0.085


cg15272956
20
62332704
ARFRP1
0.000
0.054


cg05088515
21
14982779
POTED
0.000
0.038


cg01429669
21
36003945

0.000
0.055


cg19857851
21
37831805

0.001
0.095


cg04494594
21
37833531
CLDN14
0.000
0.057


cg24418664
21
39994148
ERG
0.001
0.095


cg08073527
21
43256581
PRDM15
0.000
0.044


cg03877713
21
43965993
SLC37A1
0.000
0.057


cg21703763
21
44065429

0.000
0.041


cg09962824
21
44479417
CBS
0.000
0.044


cg01775970
21
44486298
CBS
0.000
0.077


cg06795712
21
45344756
AGPAT3
0.000
0.041


cg09607525
21
45655347
ICOSLG
0.000
0.026


cg11795532
21
45751016
C21orf2
0.000
0.083


cg06525127
21
46437477

0.001
0.089


cg10703625
21
47316029
PCBP3
0.001
0.089


cg01709871
21
47340130
PCBP3
0.000
0.086


cg00009944
21
48017232

0.000
0.063


cg26997216
22
18062656
SLC25A18
0.000
0.036


cg01987637
22
18435125
MICAL3
0.000
0.040


cg11017947
22
19012901

0.000
0.073


cg12365606
22
19466779
UFD1L
0.001
0.089


cg17135392
22
19697889

0.000
0.057


cg13473117
22
19867665
TXNRD2
0.000
0.080


cg08829877
22
19960832
ARVCF
0.000
0.076


cg00990587
22
20227688

0.000
0.061


cg10227810
22
20244820
RTN4R
0.001
0.094


cg22278668
22
20276467

0.001
0.100


cg16614114
22
20381640

0.000
0.067


cg04006399
22
20782138
SCARF2
0.000
0.080


cg03815917
22
20909385
MED15
0.001
0.095


cg13789662
22
22323116
TOP3B
0.000
0.067


cg23309985
22
22390728

0.000
0.046


cg22510462
22
24185121

0.001
0.087


cg03804253
22
24204323
SLC2A11
0.000
0.033


cg01845664
22
27539041

0.000
0.086


cg21103763
22
28012091

0.000
0.044


cg10200475
22
28147808
MN1
0.001
0.091


cg02296424
22
28150836
MN1
0.000
0.014


cg24170784
22
30119712
CABP7
0.000
0.078


cg22605708
22
33716427
LARGE
0.001
0.088


cg21240468
22
36948071

0.000
0.038


cg22831745
22
37453351
KCTD17
0.000
0.077


cg03585335
22
38332384
MICALL1
0.000
0.078


cg01777170
22
38337780
MICALL1
0.000
0.078


cg05447556
22
38377633
SOX10
0.000
0.082


cg14548005
22
38632980
TMEM184B
0.000
0.019


cg00097550
22
38821039

0.000
0.071


cg19524939
22
39138584
SUN2
0.000
0.082


cg12934542
22
41814473

0.000
0.059


cg02504025
22
41909971
ACO2
0.000
0.044


cg08969198
22
43011054
RNU12; POLDIP3; POLDIP3
0.000
0.013


cg13821759
22
43092608
A4GALT
0.000
0.050


cg00243193
22
43190232

0.000
0.057


cg24231475
22
43608088
SCUBE1
0.000
0.025


cg19931336
22
43816283
MPPED1
0.000
0.079


cg14811630
22
43926472
EFCAB6-AS1; EFCAB6; EFCAB6
0.000
0.056


cg13093876
22
44834100

0.000
0.044


cg11468663
22
44840013
LOC101927526
0.000
0.057


cg19755003
22
46489736
LOC400931
0.000
0.013


cg24101990
22
46594251
PPARA
0.001
0.100


cg06282811
22
49012297
FAM19A5
0.001
0.094


cg18706131
22
49291056
LINC01310
0.000
0.023


cg12520986
22
49411355

0.000
0.058


cg04929006
22
50686848
HDAC10
0.001
0.099


cg01959071
22
50712766

0.000
0.076





















TABLE S4





TargetID
CHR
Position
Gene name
p.value
FDR




















cg06089960
1
1498081
SSU72
0.000
0.036


cg05642789
1
1564482
MIB2
0.000
0.019


cg06820287
1
6381947
ACOT7
0.000
0.063


cg23268115
1
8444616
RERE
0.000
0.051


cg09936426
1
13839913

0.000
0.016


cg25006925
1
19479891
UBR4
0.000
0.066


cg10345000
1
20984090
DDOST
0.000
0.091


cg08266565
1
24286678
PNRC2
0.000
0.036


cg23990272
1
25906648

0.000
0.036


cg03601969
1
26038036
MAN1C1
0.000
0.087


cg00418303
1
26183261
C1orf135
0.000
0.081


cg20135776
1
27045762
ARID1A
0.000
0.038


cg04606722
1
28918161
RAB42
0.000
0.083


cg00889308
1
29166539
OPRD1
0.000
0.041


cg08738123
1
35646369

0.000
0.052


cg09677626
1
52372392

0.000
0.012


cg23062149
1
53388487
ECHDC2
0.000
0.061


cg18989524
1
54706899
SSBP3
0.000
0.043


cg22027837
1
55320014
DHCR24
0.000
0.077


cg17011134
1
57293848

0.000
0.080


cg23128263
1
66797473
PDE4B
0.000
0.043


cg09980099
1
68935986

0.000
0.082


cg16741816
1
74664419
FPGT; FPGT; FPGT; LRRIQ3; FPGT-TNNI3K; FPGT-TNNI3K
0.000
0.045


cg21973660
1
154238774
UBAP2L
0.000
0.024


cg15434589
1
155896708
SCARNA4; KIAA0907
0.000
0.097


cg16691898
1
156255600
TMEM79
0.000
0.025


cg23156469
1
179038423
FAM20B
0.000
0.065


cg19714595
1
202111623
ARL8A
0.000
0.040


cg00091004
1
203455289
PRELP
0.000
0.076


cg04737369
1
243245347
LINC01347
0.000
0.064


cg09907493
1
249141346
ZNF672
0.000
0.084


cg13401282
2
8272566
LINC00299
0.000
0.074


cg07892276
2
26718652
OTOF
0.000
0.046


cg04437845
2
47291703
TTC7A
0.000
0.060


cg21315783
2
53725202

0.000
0.040


cg04218520
2
54092167
PSME4
0.000
0.002


cg16665410
2
54890466
SPTBN1
0.000
0.059


cg09033376
2
70188512
ASPRV1
0.000
0.066


cg21937479
2
84686716
SUCLG1
0.000
0.023


cg03559235
2
100937944
LONRF2
0.000
0.051


cg09427429
2
128450658

0.000
0.010


cg15136850
2
128471169
WDR33
0.000
0.024


cg27174698
2
129244189

0.000
0.063


cg27022372
2
130986904

0.000
0.042


cg08007557
2
131305411
LOC150527
0.000
0.080


cg15899474
2
172779515
HAT1
0.000
0.019


cg24512321
2
199179548
LOC101927619
0.000
0.028


cg03148038
2
217526915
IGFBP2
0.000
0.034


cg12298075
2
219288338
VIL1
0.000
0.044


cg22952218
2
219561197
STK36
0.000
0.030


cg12098401
2
220247547
DNPEP
0.000
0.085


cg18607830
2
225811738
DOCK10
0.000
0.013


cg01021245
2
230911000
SLC16A14
0.000
0.038


cg02789126
2
234667777
UGT1A10; UGT1A1; UGT1A6; UGT1A8; UGT1A4; UGT1A
0.000
0.056


cg07750784
2
239988676
HDAC4
0.000
0.080


cg06738121
2
240497985

0.000
0.027


cg07131284
2
241223697

0.000
0.060


cg18266860
2
243028057

0.000
0.052


cg06435590
3
13096330
IQSEC1
0.000
0.070


cg10671785
3
28357636
CMC1
0.000
0.074


cg21743300
3
30183760

0.000
0.096


cg19155557
3
41240643
CTNNB1
0.000
0.086


cg16586182
3
47516702
SCAP
0.000
0.010


cg17780891
3
48754256
IP6K2
0.000
0.007


cg00906510
3
49750801
RNF123
0.000
0.060


cg14986395
3
49824225
IP6K1
0.000
0.005


cg16222802
3
50295474
GNAI2
0.000
0.098


cg09664467
3
50477984
CACNA2D2
0.000
0.034


cg19498531
3
52114795
POC1A
0.000
0.090


cg18216970
3
101654175

0.000
0.044


cg17812951
3
113415923
KIAA2018
0.000
0.023


cg12563471
3
126270014
C3orf22
0.000
0.091


cg23519086
3
128131147

0.000
0.057


cg22676038
3
171844746
FNDC3B
0.000
0.071


cg25162301
3
186330055
AHSG
0.000
0.089


cg10214896
3
194488545
LOC100507391
0.000
0.027


cg25792473
4
1029484

0.000
0.082


cg20163033
4
2627194
FAM193A
0.000
0.086


cg17373573
4
17494100
QDPR
0.000
0.023


cg04954615
4
56913133

0.000
0.018


cg02087774
4
76419649
RCHY1
0.000
0.021


cg24807339
4
113831264
ANK2
0.000
0.019


cg16487601
4
120465560
PDE5A
0.000
0.070


cg18669481
4
124570724

0.000
0.056


cg14990681
4
138655843

0.000
0.087


cg03316672
4
140224059
NDUFC1; NDUFC1; NDUFC1; NDUFC1; NAA15
0.000
0.016


cg24127867
4
154016624

0.000
0.057


cg23190972
5
9069719
SEMA5A
0.000
0.056


cg04209913
5
37836246
GDNF
0.000
0.013


cg12092888
5
43314056
HMGCS1
0.000
0.006


cg26551019
5
61606822
KIF2A
0.000
0.096


cg08386422
5
64029916
SFRS12IP1
0.000
0.033


cg13107682
5
90139381
ADGRV1
0.000
0.012


cg07027680
5
92917049
NR2F1-AS1
0.000
0.012


cg04579904
5
133039612

0.000
0.086


cg10002245
5
172104172
NEURL1B
0.000
0.088


cg25199188
5
176742719

0.000
0.071


cg21010642
6
15292218
JARID2
0.000
0.077


cg24124245
6
16687926
ATXN1
0.000
0.024


cg19664712
6
20534695
CDKAL1
0.000
0.096


cg27311647
6
30309124
TRIM39
0.000
0.089


cg04349266
6
30519905
GNL1
0.000
0.069


cg03825488
6
30885460
VARS2
0.000
0.081


cg25120992
6
31735435
C6orf27
0.000
0.052


cg22974212
6
31744040
C6orf27
0.000
0.062


cg16164092
6
31782675
HSPA1L; HSPA1L; HSPA1A
0.000
0.006


cg11949420
6
32168681
NOTCH4
0.000
0.067


cg05318169
6
33255475
WDR46
0.000
0.064


cg14743708
6
33752667
LEMD2
0.000
0.091


cg12357304
6
35464821
TEAD3
0.000
0.004


cg18638120
6
43653025
MRPS18A
0.000
0.015


cg15791942
6
71013371
COL9A1
0.000
0.091


cg18389283
6
83931782
ME1
0.000
0.023


cg25380151
6
135259247
ALDH8A1
0.000
0.098


cg25543459
6
137304411
NHEG1
0.000
0.096


cg02079034
6
150589148

0.000
0.061


cg18345781
6
156681298

0.000
0.032


cg04721711
6
157370383
ARID1B
0.000
0.019


cg16958667
6
161863721
PARK2
0.000
0.074


cg22911934
6
168844755
SMOC2
0.000
0.069


cg24577389
7
2082868
MAD1L1
0.000
0.012


cg04953155
7
5012784
RNF216L
0.000
0.030


cg26055458
7
26242418
CBX3
0.000
0.004


cg06871974
7
47578960
TNS3
0.000
0.046


cg27341156
7
50342251
IKZF1
0.000
0.067


cg16120742
7
50345049
IKZF1
0.000
0.018


cg13205784
7
91875234
KRIT1; KRIT1; KRIT1; KRIT1; ANKIB1; KRIT1; KRIT1; KRIT1
0.000
0.016


cg26739865
7
93520172
TFPI2
0.000
0.088


cg19713140
7
157584994
PTPRN2
0.000
0.081


cg02987368
8
1605546
DLGAP2
0.000
0.011


cg08059631
8
6274876
MCPH1
0.000
0.040


cg08281489
8
8301941

0.000
0.082


cg27115745
8
8423471

0.000
0.051


cg14840163
8
22921537
TNFRSF10B
0.000
0.057


cg12804434
8
27822750
SCARA5
0.000
0.076


cg23748584
8
49021981

0.000
0.095


cg05230553
8
67974631
COPS5
0.000
0.049


cg14667695
8
72941949
TRPA1; MSC-AS1; MSC-AS1
0.000
0.090


cg12680929
8
101429030

0.000
0.004


cg07987196
8
101727818
PABPC1
0.000
0.038


cg00579505
8
134477188
ST3GAL1
0.000
0.067


cg20008846
8
144521520
ZC3H3
0.000
0.083


cg09320516
9
34560633
CNTFR
0.000
0.068


cg14645209
9
77568030
C9orf40
0.000
0.009


cg08449003
9
78981537

0.000
0.052


cg15240474
9
99941655

0.000
0.085


cg13802942
9
124107255
STOM
0.000
0.046


cg27571591
9
135569701

0.000
0.013


cg00827663
9
139801358
TRAF2
0.000
0.033


cg02820283
9
139912268
ABCA2
0.000
0.049


cg11828236
10
11213396
CELF2
0.000
0.014


cg01003015
10
17271136
VIM
0.000
0.000


cg16453479
10
30001125
SVIL
0.000
0.088


cg02889834
10
32126259
ARHGAP12
0.000
0.091


cg22738000
10
45466678
RASSF4
0.000
0.035


cg25095973
10
48413850
GDF2
0.000
0.015


cg15831769
10
63660953
ARID5B
0.000
0.009


cg16990532
10
72238449
KIAA1274
0.000
0.001


cg14922784
10
73982598
ANAPC16
0.000
0.019


cg10501712
10
74812107
P4HA1
0.000
0.051


cg12858416
10
75675024
C10orf55; PLAU; PLAU
0.000
0.074


cg18387270
10
89625287
PTEN
0.000
0.025


cg22410089
10
97033172
PDLIM1
0.000
0.080


cg05778706
10
101372151
SLC25A28
0.000
0.002


cg06776915
10
106028703
GSTO2
0.000
0.043


cg05644090
10
131826455

0.000
0.092


cg06566391
11
1980544

0.000
0.091


cg12845432
11
2397773
CD81
0.000
0.087


cg05106294
11
12031097
DKK3
0.000
0.018


cg01795204
11
17332405
NUCB2
0.000
0.000


cg22717608
11
34937665
PDHX; APIP; PDHX; PDHX
0.000
0.069


cg21572636
11
55906512
OR8J3
0.000
0.034


cg12027899
11
58385947
ZFP91; ZFP91-CNTF
0.000
0.084


cg17247314
11
63528669
C11orf95
0.000
0.091


cg14483383
11
64022763
PLCB3
0.000
0.058


cg03947398
11
65427365
RELA
0.000
0.082


cg24484394
11
65997840
PACS1
0.000
0.096


cg07324903
11
68769194

0.000
0.083


cg19120782
11
71724432
NUMA1
0.000
0.024


cg23214363
11
75497561
DGAT2
0.000
0.071


cg24919836
11
77242139

0.000
0.014


cg21574811
11
111798874
DIXDC1
0.000
0.084


cg19679081
12
14514673

0.000
0.028


cg06459968
12
42869372
PRICKLE1
0.000
0.069


cg25775493
12
51380625
SLC11A2
0.000
0.068


cg24385568
12
53547962

0.000
0.093


cg02405318
12
94996676
TMCC3
0.000
0.070


cg14784415
12
115890828

0.000
0.097


cg17066349
12
120130646
CIT
0.000
0.042


cg19378602
12
125477596
BRI3BP
0.000
0.023


cg06378607
12
132426436
PUS1
0.000
0.071


cg15608781
13
20357211
PSPC1
0.000
0.080


cg19100406
13
75875116
TBC1D4
0.000
0.068


cg20928950
13
113976443
LAMP1
0.000
0.025


cg19963836
13
114084693
ADPRHL1
0.000
0.083


cg20578739
14
20854320
TEP1
0.000
0.053


cg23462545
14
35315496
BAZ1A
0.000
0.014


cg18079538
14
36947368
SFTA3
0.000
0.020


cg16747861
14
39640418
TRAPPC6B
0.000
0.046


cg01415341
14
53290485

0.000
0.051


cg04029944
14
71353213

0.000
0.003


cg25955475
14
74390121
ZNF410
0.000
0.074


cg11591809
14
78059873
SPTLC2
0.000
0.007


cg13795652
14
90050804
FOXN3
0.000
0.076


cg18925366
14
99857143

0.001
0.111


cg03380744
15
29287083
APBA2
0.000
0.061


cg02953927
15
44038812
PDIA3; CATSPERZP1
0.000
0.021


cg20665205
15
49254494
SHC4
0.000
0.098


cg04468564
15
49913596
C15orf33; DTWD1; DTWD1
0.000
0.024


cg26431773
15
50652469
MIR4712
0.000
0.074


cg12656006
15
78233786

0.000
0.056


cg21621850
15
83480071
WHAMM
0.000
0.018


cg09239016
15
86130320
AKAP13
0.000
0.071


cg05526487
15
93126955

0.000
0.099


cg23740245
16
737393
WDR24
0.000
0.083


cg27191520
16
2127829
TSC2
0.000
0.034


cg23432622
16
2762899
PRSS27
0.000
0.075


cg01953450
16
2818424
SRRM2
0.000
0.011


cg02512806
16
3775494
CREBBP
0.000
0.086


cg14032653
16
8589123
TMEM114
0.000
0.063


cg03553715
16
9052489
USP7
0.000
0.055


cg06842339
16
19716196

0.000
0.072


cg05569877
16
22203612

0.000
0.018


cg02754554
16
29234209

0.000
0.012


cg03598031
16
46666176

0.000
0.095


cg23895001
16
72117593

0.000
0.079


cg27583026
16
74456200
CLEC18B
0.000
0.046


cg12107369
16
81295075
BCO1
0.000
0.048


cg15643526
16
84450919
ATP2C2
0.000
0.070


cg03551062
16
88041289
BANP
0.000
0.080


cg12091956
16
88803110
PIEZO1; LOC100289580
0.000
0.062


cg02542770
17
7790265
CHD3
0.000
0.007


cg04069788
17
8172354
PFAS
0.000
0.039


cg24551459
17
40308110
RAB5C
0.000
0.066


cg10632031
17
41149985
RPL27
0.000
0.007


cg26876703
17
48540366
ACSF2
0.000
0.061


cg22150779
17
56015621
CUEDC1
0.000
0.061


cg21948011
17
64251367

0.000
0.015


cg16629616
17
67363884

0.000
0.043


cg21152875
17
73613020
MYO15B
0.000
0.046


cg04131638
17
76988208
CANT1
0.000
0.004


cg23836168
17
77084618
ENGASE
0.000
0.096


cg09059758
17
79410417
BAHCC1
0.000
0.050


cg08123067
17
81047183
METRNL
0.000
0.023


cg24045835
18
9720358
RAB31
0.000
0.091


cg11064350
18
29671705
RNF138
0.000
0.000


cg15653090
18
32440614
DTNA
0.000
0.096


cg23711434
18
53419122

0.000
0.093


cg05306134
19
1626509
TCF3
0.000
0.087


cg11251319
19
1812732
ATP8B3
0.000
0.000


cg06121031
19
5066714
KDM4B
0.000
0.011


cg17967227
19
7998995
TIMM44
0.000
0.018


cg09779392
19
11094753
SMARCA4
0.000
0.031


cg22949562
19
17951967
JAK3
0.000
0.055


cg01020700
19
18867501
CRTC1;
0.000
0.070


cg25156646
19
36523600
CLIP3; CLIP3; LOC101927572
0.000
0.019


cg02795700
19
41036303
SPTBN4
0.000
0.008


cg06794268
19
41771003
HNRNPUL1
0.000
0.027


cg08017389
19
49553954

0.000
0.069


cg05785516
19
54371637
MYADM
0.000
0.000


cg07131807
19
54629249
PRPF31
0.000
0.046


cg08747583
19
55144503
LILRB1
0.000
0.067


cg24863262
19
55738529
TMEM86B
0.000
0.080


cg12300074
19
58755150
ZNF544
0.000
0.005


cg03424273
20
20440693
RALGAPA2
0.000
0.067


cg05082083
20
37055221
LOC388796; SNORA71B; LOC388796
0.000
0.081


cg07047373
20
61733540
HAR1B; HAR1A
0.000
0.075


cg12783942
21
38156279
HLCS
0.000
0.096


cg24098080
21
38179719
HLCS
0.000
0.021


cg27243685
21
43642366
ABCG1
0.000
0.028


cg20130085
21
43733981
TFF3
0.000
0.098


cg01368089
21
45810660
TRPM2
0.000
0.045


cg24850445
21
46306794
ITGB2
0.000
0.023


cg05124770
22
24578799
SUSD2
0.000
0.066


cg13739442
22
29730260
AP1B1; SNORD125; AP1B1; AP1B1
0.000
0.061


cg07693858
22
30413940
MTMR3; MTMR3; MTMR3; HORMAD2-AS1
0.000
0.062


cg12110826
22
30774026
KIAA1656
0.000
0.099


cg19856259
22
44834914

0.000
0.033


cg09074374
22
45296592
PHF21B
0.000
0.076


cg20247625
22
46863295
CELSR1
0.000
0.087


cg10214827
22
50064867

0.000
0.005








Claims
  • 1. In vitro method for monitoring or predicting whether a patient suffering from obesity is responding or will respond to a treatment with a very-low-calorie ketogenic diet (VLCKD), which comprises determining the methylation status of at least a gene or CpG selected from Table S2, Table S3 or Table S4 in whole blood obtained from the patient, wherein a statistically significant variation or deviation of level of methylation, as compared with a pre-established level of methylation, is an indication that the subject is responding or will respond to a VLCKD.
  • 2. In vitro method, according to claim 1, wherein the method comprises: a. Selecting those CpG sites characterized by being differentially methylated, showing a differential β value≥2% and FDR<0.10, between patients who are in the period of maximum ketosis that occurs between days 30 and 90 of the diet and the patients who are at the end of the diet that occurs between days 120 and 180, with respect to a control value represented by the level of methylation in patients who are in baseline state that occurs at the beginning of the diet; and/orb. Selecting those CpG sites characterized by being differentially methylated, showing a differential β value≥2% and FDR<0.10, between patients who are in the period of maximum ketosis that occurs between days 30 and 90 of the diet, with respect to a control value represented by the level of methylation in patients who are in baseline state that occurs at the beginning of the diet, and discarding those CpG sites that are differentially methylated between the patients who are in the period of maximum ketosis that occurs between days 30 and 90 of the diet and the patients who are at the end of the diet that occurs between days 120 and 180; andc. Selecting those genes which comprises in the promoter region at least two of the differentially methylated CpG sites which have been selected according to the steps a) and/or b).
  • 3. In vitro method, according to claim 2, wherein the genes and CpG sites which are selected according to the steps a) and c) of claim 2 are comprised in Table 2 and their methylation status indicates whether a patient suffering from obesity is responding or will respond to VLCKD giving rise to both weight loss and nutritional ketosis induction, and/or wherein the genes and CpG sites which are selected according to the steps b) and c) of claim 2 are comprised in Table 3 and their methylation status indicates whether a patient suffering from obesity is responding or will respond to VLCKD due to the induction of nutritional ketosis
  • 4. In vitro method, according to any of the previous claims, for monitoring or predicting whether a patient suffering from obesity is responding or will respond to a VLCKD giving rise to both weight loss and nutritional ketosis induction characterized by low fat consumption, which comprises determining the methylation status of at least a gene selected from Table 2, wherein a statistically significant variation or deviation of level of methylation, as compared with a pre-established level of methylation, is an indication that the subject is responding or will respond to a VLCKD.
  • 5. In vitro method, according to claim 4, wherein the methylation status of the genes is determined in at least a CpG site selected from Table 2.
  • 6. In vitro method, according to any of the claims 1 to 3, for monitoring or predicting whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with a VLCKD, which comprises determining the methylation status of at least a gene selected from Table 3, wherein a statistically significant variation or deviation of level of methylation, as compared with a pre-established level of methylation, is an indication that ketosis reduction has occurred.
  • 7. In vitro method, according to claim 6, wherein the methylation status of the genes is determined in at least a CpG site selected from Table 3.
  • 8. In vitro method, according to any of the previous claims, wherein an overall hypomethylation of the genes is observed when the patient is responding or will respond to the treatment with a VLCKD.
  • 9. In vitro method, according to any of the previous claims, wherein the methylation status detection is conducted by means of a technique selected from the group consisting of: methylation specific PCR, bisulphite sequencing, techniques based on restriction-digestion, pyrosequencing, assay ChIP-on-chip, differential conversion, differential restriction and/or differential weight of site(s) methylated.
  • 10. In vitro method, according to any of the previous claims, characterized in that it is carried out in blood leucocytes.
  • 11. In vitro use of the methylation status of at least a gene or CpG selected from Table S2, Table S3 or Table S4 for monitoring or predicting whether a patient suffering from obesity is responding or will respond to a VLCKD.
  • 12. In vitro use, according to claim 11, of the methylation status of at least a gene selected from Table 2 for monitoring or predicting whether a patient suffering from obesity is responding or will respond to a VLCKD giving rise to both weight loss and nutritional ketosis induction, characterized by low fat consumption.
  • 13. In vitro use, according to claim 12, of the methylation status of at least a CpG site selected from Table 2.
  • 14. In vitro use, according to claim 11, of the methylation status of at least a gene selected from Table 3 for monitoring or predicting whether an improvement of metabolic parameters has occurred in a patient suffering from obesity after the induction of nutritional ketosis by means of a treatment with a VLCKD.
  • 15. In vitro use, according to claim 14, of the methylation status of at least a CpG site selected from Table 3.
Priority Claims (1)
Number Date Country Kind
21382469.1 May 2021 EP regional
PCT Information
Filing Document Filing Date Country Kind
PCT/EP2022/063669 5/20/2022 WO