Patent Application
20090137780
The present invention relates to a process for producing a peptide thioester compound.
Many proteins existing in vivo are glycoproteins, proteins having oligosaccharide chains. Oligosaccharide chains in glycoproteins work in such a way that they maintain the three-dimensional structures of the proteins, regulate solubility, and impart protease resistance thereto. It is now becoming evident that the oligosaccharide chains in glycoproteins are involved in life phenomena such as fertilization or differentiation, signal transduction, canceration, intracellular protein transport, and regulation of biological activities. Thus, oligosaccharide chains bonded to proteins play an important role in various physiological functions. However, these oligosaccharide chains have diverse structures, and they are classified into various categories. Under the circumstances, it is therefore extremely difficult to identify which oligosaccharide chain structure is involved in a life phenomenon. Synthesis of glycoproteins or glycopeptides having an oligosaccharide chain with a single structure is also indispensable for elucidating such functions. At present, glycoproteins can be expressed by biological approaches using protein expression, although glycoproteins having an oligosaccharide chain with a uniform structure are difficult to obtain. Therefore, studies have been made in recent years on the precise chemical synthesis of glycopeptides or glycoproteins having an oligosaccharide chain with a single structure.
The present inventors have established a process for preparing a large amount of a biantennary complex-type oligosaccharide chain that can be used as a raw material from a chicken egg by combining enzymatic and chemical methods (Patent Document 1) and a process for synthesizing a sialylated glycopeptide by applying a solid-phase peptide synthesis method to a complex type oligosaccharide chain (Patent Document 2). If glycopeptides can be polymerized, large glycoproteins having an oligosaccharide chain with a single structure will be synthesized.
At present, the most effective peptide polymerization method is probably the native chemical ligation method (Non-Patent Document 1), which involves coupling a peptide fragment having cysteine (Cys) as an N-terminal amino acid to a peptide having thioester at the C-terminus.
Peptide synthesis methods generally used are solid-phase synthesis methods, which involve immobilizing an N-terminal protected amino acid onto an insoluble resin support, removing the protecting group in the amino acid, and then sequentially elongating a peptide chain. Examples of a method for producing the peptide having thioester at the C-terminus include a method which involves performing thioesterification during peptide excision from a solid phase and a method which involves subjecting the C-terminal carboxyl group of a peptide to thioesterification after peptide excision from a solid phase.
For example, a method which involves producing a peptide using a safety catch linker on a solid-phase resin and allowing a thiol compound to act thereon (Non-Patent Documents 1 and 2) is known as a method for performing the thioesterification during peptide excision from a solid phase. However, this method has many problems such as poor condensation efficiency in the immobilization of a first amino acid onto a resin, the slight racemization of amino acids during the condensation, and the poor reactivity of the thiol compound in esterification. Moreover, when a hydroxyl group of an oligosaccharide chain in a glycopeptide is unprotected, alkylation performed for activating the safety catch linker also alkylates the sugar hydroxyl group easily. Thus, dealkylation treatment must be performed. This treatment may influence glycosylation and so on, depending on conditions, and a uniform oligosaccharide chain structure cannot be secured in the obtained glycopeptide. To solve this problem, it is suggested that the hydroxyl group of the oligosaccharide chain is protected in advance. However, this approach is not efficient due to additional protection and deprotection steps.
A strong acid such as 95% trifluoroacetic acid or hydrogen fluoride is usually used for excising a peptide from a solid-phase resin. However, the use of such a strong acid involves the deprotection of peptide side chains or the cleavage of an oligosaccharide chain linkage in glycopeptides. A method using a trityl resin as a solid phase and acetic acid for excision (Non-Patent Documents 3, 4, and 5) and a method using a 4-hydroxymethyl-3-methoxyphenoxybutyric acid-modified resin (HMPB resin) as a solid phase and 1% trifluoroacetic acid (TFA) for excision (Non-Patent Document 6) have been reported as methods for excising a peptide from a solid-phase resin using a weak acid without causing deprotection. However, the method using a trityl resin cannot produce glycopeptides having an unprotected hydroxyl group. On the other hand, when a glycopeptide is prepared using the HMPB resin as a solid phase, the use of 1% TFA cannot excise the glycopeptide. Alternatively, the use of 10% TFA also causes the partial removal of protecting groups in the peptide side chains. For peptide thioesterification, particularly, the protection of the thiol group of N-terminal cysteine is essential for preventing self-condensation. Thus, deprotection during excision leads to fatal outcomes. Accordingly, these methods are not sufficient for producing a peptide having a carboxyl group, which is used as a raw material in the production of a peptide having thioester at the C-terminus.
A thioester form of a peptide can be produced by reacting a peptide having protected side chains with alkylthiol. However, this approach has the problem of C-terminal amino acid racemization. For circumventing racemization, a method which involves replacing a C-terminal amino acid by glycine (Non-Patent Document 7), a method using benzotriazol-1-yloxy-trispyrrolidinophosphonium hexafluorophosphate (PyBOP)/diisopropylethylamine (DIPEA) as a condensing agent in dichloromethane (DCM) (Non-Patent Document 8), and a method using 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexaflurophosphate (HBTU)/DIPEA as a condensing agent in tetrahydrofuran (THF) (Non-Patent Document 9) have been reported. However, the method which involves replacing a C-terminal amino acid by glycine has a natural limit to the types of peptides that can be produced. Moreover, glycopeptides having a hydroxyl group that is not protected with a protecting group cannot be dissolved in the solvent such as DCM or THF. Thus, these solvents must be changed, although the C-terminal amino acid racemization becomes a problem again.
[Patent Document 1] WO 03/008431
[Patent Document 2] WO 2004/005330
[Non-Patent Document 1] J. Am. Chem. Soc., 121, 11369-11374 (1999)
[Non-Patent Document 2] Angew. Chem. Int. Ed., 44, 1650-1654 (2005)
[Non-Patent Document 3] Tetrahedron Lett., 38, 6237-6240 (1997)
[Non-Patent Document 4] Tetrahedron Lett., 44, 3551-3554 (2003)
[Non-Patent Document 5] J. Am. Chem. Soc., 123, 3885-3891 (2001)
[Non-Patent Document 6] Tetrahedron, 49, 9307-9320 (1993)
[Non-Patent Document 7] Tetrahedron Lett., 38, 6237-6240 (1997)
[Non-Patent Document 8] Tetrahedron Lett., 44, 3551-3554 (2003)
[Non-Patent Document 9] J. Am. Chem. Soc., 123, 3885-3891 (2001)
An object of the present invention is to provide a process for producing a peptide having a carboxyl group at the C-terminus, with protecting groups in the peptide side chains maintained, which is applicable to a non-glycosylated peptide or even to a glycopeptide having an oligosaccharide chain, particularly, an oligosaccharide chain with an unprotected hydroxyl group.
Another object of the present invention is to provide a process for efficiently producing a peptide thioester compound, with racemization reduced, which is applicable to a non-glycosylated peptide or even to a glycopeptide having an oligosaccharide chain, particularly, an oligosaccharide chain with an unprotected hydroxyl group.
The present invention relates to the following invention:
a process for producing a peptide thioester compound, characterized by comprising:
(A) forming a peptide by a solid-phase synthesis method using a resin modified with a linker represented by the formula (1) as a solid phase;
(B) cleaving a bond between the solid phase and the peptide with at least one acid selected from dilute hydrochloric acid, dilute sulfuric acid, formic acid, and acetic acid to produce a peptide having a carboxyl group at the C-terminus; and
(C) reacting a thiol compound with the peptide at −100 to 0° C. in the presence of a condensing agent in a solvent:
wherein R1 represents a C1-4 alkyl group, R2 represents a hydrogen atom or C1-4 alkoxy group, and n represents an integer of 1 to 4.
The present inventors have found that a peptide produced under particular conditions using a particular solid-phase resin can be excised from the solid-phase resin to thereby produce a peptide having a carboxyl group at the C-terminus, with protecting groups in the side chains maintained, without influencing the oligosaccharide chain structure.
The present inventors have further found that a thiol compound can be allowed to act on the C-terminal carboxyl group of the obtained peptide at a low temperature in the presence of a particular condensing agent to thereby produce a peptide thioester compound, with the C-terminal racemization of the peptide reduced.
The process for producing a peptide thioester compound according to the present invention comprises the steps of: (A) forming a peptide by a solid-phase synthesis method using a resin modified with a linker represented by the formula (1) as a solid phase; (B) cleaving the bond between the solid phase and the peptide with at least one acid selected from dilute hydrochloric acid, dilute sulfuric acid, formic acid, and acetic acid to produce a peptide having a carboxyl group at the C-terminus; and (C) reacting a thiol compound with the peptide at −100 to 0° C. in the presence of a condensing agent in a solvent.
In this step, a resin modified with a linker represented by the formula (1) is used:
wherein R1 represents C1-4 alkyl group, R2 represents hydrogen atom or C1-4 alkoxy group, and n represents an integer of 1 to 4.
The C1-4 alkyl group refers to linear or branched alkyl groups having 1 to 4 carbon atoms, such as methyl, ethyl; n-propyl, isopropyl, n-butyl, isobutyl, sec-butyl, and tert-butyl groups.
The C1-4 alkoxy group refers to linear or branched alkoxy groups having 1 to 4 carbon atoms, such as methoxy, ethoxy, n-propoxy, isopropoxy, n-butoxy, isobutoxy, sec-butoxy, and tert-butoxy groups.
The resin modified with a linker represented by the formula (1) may be a commercially available resin or a resin previously known in the art. Examples thereof include HMPB-BHA (4-hydroxymethyl-3-methoxyphenoxybutyric acid-benzhydrylamine) and HMPB-MBHA (4-hydroxymethyl-3-methoxyphenoxybutyric acid-methylbenzhydrylamine) resins. In glycopeptide production, a highly swellable resin can be used, which is obtained by reacting the amino group of an amino-PEGA resin (manufactured by Novabiochem) with the carboxyl group of a carboxylic acid compound represented by the formula (2) in the presence of a dehydration condensing agent according to amidation reaction previously known in the art (in this context, PECA resin refers to bisacrylamidoprop-1-yl polyethyleneglycol):
wherein R1, R2, and n are the same as above.
Among the obtained resins having the linker represented by the formula (1), a resin wherein R1 is a methyl group and R2 is a hydrogen atom or C1-4 alkyl group is preferable. A resin wherein R1 is a methyl group, R2 is a hydrogen atom or C1-4 alkyl group, and n is an integer of 2 to 4 is more preferable. A resin wherein R1 is a methyl group, R2 is a hydrogen atom or C1-4 alkyl group, and n is 3 is particularly preferable.
Specifically, for example, a resin represented by the formula (3) is particularly preferable:
wherein R2 is the same as above.
The resin modified with a linker represented by the formula (1) is used as a solid phase for peptide production.
Examples of steps of the peptide production include the following steps (a) to (e):
(a) reacting, through esterification, the hydroxyl group of the linker moiety represented by the formula (1) in the resin modified with the linker represented by the formula (1) with the carboxyl group of an amino acid having an amino group protected with a protecting group;
(b) removing the protecting group in the amino group to form an unprotected amino group;
(c) reacting, through amidation, this unprotected amino group with the carboxyl group of an amino acid having a protected amino group;
(d) removing the protecting group to form an unprotected amino group; and
(e) repeating the steps (c) and (d) at least once to form a peptide.
All amino acids can be used as the amino acids described above. Examples thereof can include serine (Ser), asparagine (Asn), valine (Val), leucine (Leu), isoleucine (Ile), alanine (Ala), tyrosine (Tyr), glycine (Gly), lysine (Lys), arginine (Arg), histidine (His), aspartic acid (Asp), glutamic acid (Glu), glutamine (Gln), threonine (Thr), cysteine (Cys), methionine (Met), phenylalanine (Phe), tryptophan (Trp), and proline (Pro).
Examples of the protecting group can include protecting groups such as 9-fluorenylmethyloxycarbonyl (Fmoc), t-butyloxycarbonyl (Boc), carbonate-containing (e.g., allyloxycarbonate (Alloc)), acyl (e.g., acetyl), allyl, and benzyl groups. To introduce the protecting group, for example, the Fmoc group can be introduced by performing reaction by the addition of 9-fluorenylmethyl-N-succinimidyl carbonate and sodium hydrogen carbonate. The reaction may be performed at 0 to 50° C., preferably at room temperature, for approximately 1 to 5 hours.
An amino acid having an amino group protected with a fat-soluble protecting group can be produced by introducing a fat-soluble protecting group to the amino group of the amino acid according to the method described above or a method known in the art. Alternatively, those commercially available can also be used. Examples of an amino acid having an amino group protected with an Fmoc group can include Fmoc-Ser, Fmoc-Asn, Fmoc-Val, Fmoc-Leu, Fmoc-Ile, Fmoc-AIa, Fmoc-Tyr, Fmoc-Gly, Fmoc-Lys, Fmoc-Arg, Fmoc-His, Fmoc-Asp, Fmoc-Glu, Fmoc-Gln, Fmoc-Thr, Fmoc-Cys, Fmoc-Met, Fmoc-Phe, Fmoc-Trp, Fmoc-Pro.
Cysteine (Cys) can be selected as an amino acid to be introduced finally to thereby produce a peptide having cysteine at the N-terminus. This peptide can be used as a fragment to be coupled with a peptide thiol ester compound in native chemical ligation.
A glycosylated amino acid in which an oligosaccharide chain is bonded to an amino acid can be used to thereby produce a glycopeptide having the glycosylated amino acid introduced at an arbitrary position in the peptide chain.
The glycosylated amino acid used is not particularly limited as long as it has any number of sugar residues. Examples thereof can include a high-mannose-type oligosaccharide chain rich in mannose, a complex-type oligosaccharide chain having a sialic acid or galactose residue at the oligosaccharide chain nonreducing end (FIG. 1), a hybrid-type oligosaccharide chain comprising a high-mannose structure mixed with a complex-type oligosaccharide chain, an N-linked oligosaccharide chain in which asparagine is N-glycosylated on its side chain amide group, and an O-linked oligosaccharide chain in which an alcohol in a serine or threonine side chain is glycosylated. Specific examples thereof can include glycosylated asparagine described in WO 03/008431. Among them, disialo- or monosialo-oligosaccharide chain added asparagine is preferable. For example, an oligosaccharide chain having a carboxyl group of the sialic acid protected with a protecting group such as a benzyl group is particularly preferable, which is represented by the formula (4). A glycopeptide comprising such disialo- or monosialo-oligosaccharide chain added asparagine bonded thereto is a preferable glycopeptide.
The esterification reaction of the hydroxyl group of the linker moiety in the resin with the carboxyl group of the amino acid having a protected amino group can be performed using, for example, a dehydration condensing agent such as 1-mesitylenesulfonyl-3-nitro-1,2,4-triazole (MSNT), DCC, or diisopropylcarbodiimide (DIPCDI) and is preferably performed, for example, by placing the resin in a solid-phase column, washing the resin with a solvent, and then adding a solvent solution of the amino acid thereto.
Examples of the solvent for washing can include DMF, 2-propanol, and DCM. Examples of the solvent for dissolving the amino acid therein can include DMSO, DMF, and DCM. The reaction may be performed at 0 to 50° C., preferably at room temperature, for approximately 10 minutes to 30 hours, preferably for approximately 15 minutes to 24 hours.
In this procedure, unreacted hydroxyl groups on the solid phase may also be acetylated for capping using an acetic anhydride or the like.
The removal of the protecting group in the amino group can be performed by treatment with an acid or base. For example, when the protecting group is an Fmoc group, a base such as piperidine or morpholine can be used. This procedure is preferably performed in the presence of a solvent. Examples of the solvent can include DMSO, DMF, and methanol.
The amidation reaction of the unprotected amino group with the carboxyl group of any amino acid having a protected amino group is preferably performed in the presence of an activator and a solvent.
Examples of the activator can include dicyclohexylcarbodiimide (DCC), 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide hydrochloride (WSC/HCl), diphenylphosphoryl azide (DPPA), carbonyldiimidazole (CDI), diethyl cyanophosphonate (DEPC), diisopropylcarbodiimide (DIPCI), benzotriazol-1-yloxy-trispyrrolidinophosphonium hexafluorophosphate (PyBOP), 1-hydroxybenzotriazole (HOBt), hydroxysuccinimide (HOSu), dimethylaminopyridine (DMAP), 1-hydroxy-7-azabenzotriazole (HOAt), hydroxyphthalimide (HOPht), pentafluorophenol (Pfp-OH), 2-(1H-benzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU), O-(7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphonate (HATU), O-benzotriazol-1-yl-1,1,3,3-tetramethyluronium tetrafluoroborate (TBTU), and 3,4-dihydro-3-hydrodi-4-oxa-1,2,3-benzotriazine (Dhbt).
Examples of the solvent can include dimethyl sulfoxide (DMSO), N,N-dimethylformamide (DMF), and dichloromethane (DCM).
The amount of the activator used is 0.1 to 20 equivalents, preferably 0.5 to 10 equivalents, more preferably 0.8 to 5 equivalents, with respect to the amount of the carboxylic acid compound represented by the formula (2). The reaction can be performed in the solvent and may be performed at 0 to 50° C., preferably at room temperature, for approximately 10 to 30 hours, preferably for approximately 15 minutes to 24 hours. Moreover, reaction performed in a column for solid-phase synthesis is preferable, because it can be used directly in subsequent solid-phase synthesis.
The removal of the protecting group can be performed in the same way as above.
Treatment with an acid is preferable for cleaving the peptide chain from the resin. Examples of the acid used can include mineral acids such as dilute hydrochloric acid and dilute sulfuric acid, and carboxylic acids such as formic acid and acetic acid. Examples of the dilute hydrochloric acid or dilute sulfuric acid include an aqueous solution of hydrochloric acid or sulfuric acid having a normality on the order of 0.01 to 2 N, preferably 0.05 to 1 N. Among these acids, acetic acid is preferable. The amount of the acid used is not particularly limited as long as it is 1 equivalent or more with respect to 1 equivalent of the peptide. For example, the amount may be approximately 1 to 10000 equivalents, preferably approximately 10 to 1000 equivalents.
This reaction is preferably performed in the presence of an alcohol. Examples of the alcohol include lower alcohols such as methanol, ethanol, and propanol, and halogenoalcohols such as trifluoroethanol (TFE) and trichloroethanol. Among these alcohols, methanol or trifluoroethanol is preferable. Trifluoroethanol is particularly preferable. The proportion of the alcohol used may be 0.1 to 2 volumes, preferably 0.5 to 1.5 volumes, more preferably 0.8 to 1.2 volumes of the alcohol with respect to 1 volume of the acid.
Moreover, an organic solvent such as DCM, DMF, or DMSO may also be used, if necessary, in this reaction.
The amount of the solvent used is not particularly limited and may be approximately 0.1 to 100 volumes with respect to 1 volume of the acid.
The reaction may be performed at 0 to 50° C., preferably at room temperature, for approximately 1 to 30 hours.
In this way, a peptide having a carboxyl group at the C-terminus can be obtained.
A thiol compound can be allowed to act on the obtained peptide (raw material peptide) in the presence of a condensing agent in a solvent to thereby produce a peptide having thioester at the C-terminus. Examples of the thiol compound can include benzyl mercaptans or lower alkanethiols (e.g., methanethiol and ethanethiol) which may have, at arbitrary positions) in the phenyl ring, any number of substituents such as halogen atoms (e.g., fluorine, chlorine, bromine, and iodine), lower alkyl groups having 1 to 4 carbon atoms (e.g., methyl and ethyl groups), alkoxy groups having 1 to 4 carbon atoms (e.g., methoxy and ethoxy groups), and a nitro group. Among these thiol compounds, benzyl mercaptan is particularly preferable.
The amount of the thiol compound used may be 1 to 100 equivalents, preferably 10 to 80 equivalents, more preferably 20 to 50 equivalents, with respect to 1 equivalent of the raw material peptide. Particularly, an excessive amount of the thiol compound, preferably approximately 30 equivalents or more of the thiol compound, is preferably used for reducing the C-terminal racemization of the peptide.
Examples of the solvent used include THF, DCM, DMSO, and DMF. Among them, DMF is preferable.
Examples of the condensing agent can include HOBt/DIPCI and PyBOP/DIPEA. PyBOP/DIPEA is preferable.
The ratio of HOBt/DIPCI used may be 0.1 to 10 equivalents, preferably 0.5 to 5 equivalents, more preferably 0.8 to 1.2 equivalents of DIPCI with respect to 1 equivalent of HOBt.
The ratio of PyBOP/DIPEA used may be 0.1 to 10 equivalents, preferably 0.5 to 5 equivalents, more preferably 0.8 to 1.2 equivalents of DIPEA with respect to 1 equivalent of PyBOP.
The proportion of HOBt used may be 1 to 20 equivalents, preferably 3 to 15 equivalents, more preferably 8 to 12 equivalents, with respect to 1 equivalent of the raw material peptide.
The proportion of PyBOP used may be 1 to 10 equivalents, preferably 2 to 8 equivalents, more preferably 3 to 6 equivalents, with respect to 1 equivalent of the raw material peptide.
In this reaction, a dehydrating agent such as a molecular sieve is preferably used. Peptide racemization occurs when the C-terminal carboxylic acid of the raw material peptide is activated. Therefore, the reaction is preferably performed by mixing the raw material peptide with the thiol compound and then adding the condensing agent thereto. The reaction may be performed at a temperature of −100 to 0° C., preferably −80 to −10° C., for approximately 30 minutes to 2 hours.
The ratio of racemization of the peptide obtained in the present invention is reduced and is usually 6% or less, preferably 4% or less, more preferably 2% or less, particularly preferably 0 to 1%.
Hereinafter, the present invention will be described with reference to Examples. However, the present invention is not intended to be limited to these Examples by any means.
Fmoc-protected amino acids used are known in the art and can be commercially available or prepared easily by introducing an Fmoc group into amino acids.
Moreover, Fmoc-Ala, Fmoc-Asn, Fmoc-Gly, Fmoc-Leu, Fmoc-Met, Fmoc-Phe, Fmoc-Pro, and Fmoc-Val mean that the amino group of each amino acid is protected with an Fmoc group. Boc-Cys(Acm) means that the cysteine amino group and thiol are protected with Boc and acetamidomethyl groups, respectively. Fmoc-Arg(Pbf) means NG-(2,2,4,6,7-pentamethyldihydrobenzofuran-5-sulfonyl)arginine having an arginine α-amino group protected with an Fmoc group. Fmoc-Asp(OtBu) and Fmoc-Glu(OtBu) mean that the amino group of each amino acid and the aspartic acid β- or glutamic acid γ-carboxyl group are protected with Fmoc and tert-butyl groups, respectively. Fmoc-Cys(trt) means that the cysteine amino group and thiol are protected with Fmoc and trityl groups, respectively. Fmoc-Lys(Boc) means that the lysine α- and ε-amino groups are protected with Fmoc and Boc groups, respectively. Fmoc-Ser(tBu), Fmoc-Tyr(tBu), and Fmoc-Thr(tBu) mean that the amino and hydroxyl groups of each amino acid are protected with Fmoc and trityl groups, respectively. Boc-Leu and (Boc)Leu mean that the leucine amino group is protected with a Boc group. (Boc)Lys(Boc) means that the lysine α- and ε-amino groups are protected with a Boc group. Lys(Boc) means that the lysine c-amino group is protected with a Boc group. Boc-Cys(Thz) means N-t-Boc-1,3-thiazolidine-4-carboxylic acid. Thr(tBu), Tyr(tBu), and Ser(tBu) mean that the hydroxyl group of each amino acid is protected with a tert-butyl group. His(trt) means that the imidazole nitrogen is protected with a trityl group. Cys(trt) means that the cysteine thiol group is protected with a trityl group. Gln(trt) means that amide nitrogen of glutamine is protected with a trityl group. Asp(OtBu) and Glu(OtBu) mean that the aspartic acid β- or glutamic acid γ-carboxyl group is protected with a tert-butyl group. Cys(Thz) means 1,3-thiazolidine-4-carbonyl. Arg(Pbf) means NG-(2,2,4,6,7-pentamethyldihydrobenzofuran-5-sulfonyl)arginine.
These protecting groups can be introduced according to a method previously known in the art. Alternatively, commercially available amino acids protected with these protecting groups can be used. Moreover, Ph represents a phenyl group, and Bn represents a benzyl group.
1H-NMR was measured using Bruker AVANCE 400 (indicated in 400 MHz).
An ESI mass spectrometer used was Esquire 3000 plus manufactured by Bruker Daltonics, and a MALDI mass spectrometer used was Autoflex manufactured by Bruker Daltonics. Dihydroxybenzoic acid was used in matrix.
An amino-PEGA resin (1 g, 50 μmol) was placed in a column for solid-phase synthesis. The resin was thoroughly washed with DCM and DMF and then fully swollen with DMF. 4-hydroxymethyl-3-methoxyphenoxybutyric acid (HMPB) (30.1 mg, 0.13 mmol), TBTU (40.1 mg, 0.13 mmol), and N-ethylmorpholine (15.8 μl, 0.13 mmol) dissolved in DMF (1 ml) were placed in the column, and the mixture was stirred at room temperature for 2 hours. The resin was thoroughly washed with DMF and DCM to obtain an HMPB-PEGA resin, which was in turn used as a solid phase for solid-phase synthesis.
Fmoc-Phe (96.8 mg, 0.25 mmol), MSNT (74 mg, 0.25 mmol), and N-methylimidazole (15 μl, 0.19 mmol) dissolved in DCM (1 ml) were placed in the column for solid-phase synthesis, and the mixture was stirred at room temperature for 2 hours. After stirring, the resin was washed with DCM and DMF. The Fmoc group was removed with 20% piperidine/DMF solution (1 ml) for 20 minutes. After washing with DMF, amino acids were sequentially condensed according to a method shown below to elongate a peptide chain.
An amino acid having an amino group protected with an Fmoc group was dissolved, together with HOBt (33.8 mg, 0.25 mmol) and DIPCI (38 μl, 0.25 mmol), in DMF (1 ml) and activated for 15 minutes, and the mixture was then placed in the column for solid-phase synthesis and stirred at room temperature for 1.5 hours. Then, the Fmoc group was removed with 20% piperidine/DMF solution (1 ml) for 20 minutes. This procedure was repeated to sequentially condense amino acids.
Fmoc-Tyr(tBu) (114.9 mg, 0.25 mmol), Fmoc-Asn (88.6 mg, 0.25 mmol), Fmoc-Ala (77.8 mg, 0.25 mmol), Fmoc-His(trt) (154.9 mg, 0.25 mmol), Fmoc-Ser(tBu) (95.9 mg, 0.25 mmol), Fmoc-Asp(OtBu) (102.9 mg, 0.25 mmol), Fmoc-Leu (88.4 mg, 0.25 mmol), Fmoc-Val (84.9 mg, 0.25 mmol) were used as the amino acids having an amino group protected with an Fmoc group to form a 19-residue peptide of Phe-Tyr(tBu)-Tyr(tBu)-Asn-Ala-His(trt)-Ser(tBu)-His(trt)-Asp(OtBu)-Leu-Asn-Tyr(tBu)-Leu-Phe-Phe-Ser(tBu)-Val-Ser(tBu)-Asn on the solid-phase resin.
After washing with DCM and DMF, the resin corresponding to 2 μmol of the 19-residue peptide was transferred to an Eppendorf tube.
A dibenzyl form of glycosylated asparagine (10 mg, 3.6 μmol) represented by the following formula (5) and DEPBT (2 mg, 6 μmol) dissolved in DMF (0.12 ml) were placed in the Eppendorf tube.
DIPEA (0.68 μl, 4 μmol) was added thereto, and the mixture was stirred at room temperature for 18 hours. After washing with DMF, the Fmoc group was removed with 20% piperidine to form a 20-residue peptide of Phe-Tyr(tBu)-Tyr(tBu)-Asn-Ala-His(trt)-Ser(tBu)-His(trt)-Asp(OtBu)-Leu-Asn-Tyr(tBu)-Leu-Phe-Phe-Ser(tBu)-Val-Ser(tBu)-Asn-Asn(Oligosaccharide chain) represented by the formula (6) on the solid-phase resin.
An aliquot of the resin on which the 20-residue peptide obtained in Example 1 was formed was taken into a column for solid-phase synthesis. Acetic acid:DCM:methanol (=5:4:1) was added thereto such that the resin was fully immersed in the solution. The mixture was stirred at room temperature for 3 hours. The resin was removed by filtration, and the reaction solution was concentrated under reduced pressure. The obtained residue was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1 k TFA acetonitrile: water=90:10, gradient A:B=60:40→0:100, 15 min, flow rate: 0.1 ml/min) to obtain a 20-residue peptide represented by the formula (7).
The obtained peptide had a carboxyl group at the C-terminus, with the side chain protecting groups maintained.
ESI-MS: Calcd for C279H382N34O94:
[M+3H]3+1906.3, found. 1905.8
The mixed solvent of acetic acid: DCM: methanol and the reaction time used in Example 2 were changed to acetic acid:TFE:DMC (=2:2:6) and 2 hours or to acetic acid:TFE (=1:1) and 27 hours, respectively, for reaction.
In both cases, the 20-residue peptide (7) could be obtained.
However, the condition of acetic acid:TFE:DMC gave a yield approximately 5 times higher than that given under the condition of acetic acid:DCM:methanol. Furthermore, the condition of acetic acid:TFE gave a yield approximately 8 times higher than that given under the condition of acetic acid:DCM:methanol.
An HMPB-PEGA resin (25 μmol) was obtained in the same way as in Example 1 and used as a solid phase for solid-phase synthesis. Amino acids were condensed thereon to form a peptide. The amino acid condensation was performed in the same way as in Example 1. Fmoc-Ala (38.9 mg, 0.13 mmol) was used as the first amino acid and condensed using MSNT (37 mg, 0.13 mmol), N-methylimidazole (7.5 μl, 94 μmol), and DCM (0.5 ml).
Then, amino acids having a protected amino group were sequentially condensed using HOBt (16.9 mg, 0.13 mmol), DIPCI (19.2 μl, 0.13 mmol), and DMF (0.5 ml). Fmoc-Gln (46.1 mg, 0.13 mmol), Fmoc-Thr(tBu) (49.7 mg, 0.13 mmol), Fmoc-Ile (44.2 mg, 0.13 mmol), Fmoc-Val (42.4 mg, 0.13 mmol), and Fmoc-Ser(tBu) (47.9 mg, 0.13 mmol) were sequentially used for condensation as the amino acids having a protected amino group.
After peptide elongation, the dibenzyl form of glycosylated asparagine (10 mg, 3.6 μmol) represented by the formula (5), DEPBT (2 mg, 6 μmol), DIPEA (0.68 μl, 4 μmol), and DMF (0.12 ml) were used for 2 μmol of the resin. Boc-Cys(Acm) (2.9 mg, 10 μmol) was then condensed using HOBt (1.36 mg, 10 μmol), DIPCI (1.54 μl, 10 μmol), and DMF (0.25 ml).
AcOH:TFE=1:1 (1 ml) was added to the resin, and the mixture was reacted at room temperature for 14 hours. The resin was removed by filtration, and the reaction solution was concentrated. The residue was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA/acetonitrile: water=90:10, gradient A:B=60:40→0:100, 15 min, flow rate: 0.1 ml/min) to obtain a 9-residue peptide having protected side chains, which is represented by the formula (8).
ESI-MS: Calcd for C155H249N18O79S: [M+2H]+2 1830.3, found. 1831.0.
The 9-residue peptide (8) (2 mg, 0.55 μmol) produced in Example 4, a molecular sieve (MS) 4A (10 mg), and benzyl mercaptan (2 μl, 16.4 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (85 μl). PyBOP (1.4 mg, 2.7 μmol) and DIPEA (0.46 μl, 2.7 μmol) were then added thereto, and the mixture was stirred for 4 hours. Diethyl ether (5 ml) was then added to the reaction solution to precipitate a compound. After filtration, the pellet was collected using 50% aqueous acetonitrile solution, and this pellet was freeze-dried. To the obtained freeze-dried product, 95% aqueous TFA solution was added, and the mixture was stirred at room temperature for 2 hours. The resin was removed by filtration, and the reaction solution was concentrated. The concentrate was then dissolved in 50% aqueous acetonitrile solution and freeze-dried. The freeze-dried product was purified by HPLC (Cadenza column C18 75×4.6 nm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA acetonitrile; water 90:10, gradient A:B=95:5→25:75, 15 min, flow rate: 0.1 ml/min) to produce a peptide having benzyl thioester at the C-terminus (NH2-Cys(Acm)-Asn(disialooligo)-Thr-Ser-Val-Ile-Thr-Gln-Ala-COSBn), which is represented by the formula (9).
1H-NMR (400 MHz, 295 K in D2O, HOD−δ4.81)
7.53-7.33 (m, 15H, Ph×3), 5.37 (d, 2H, J=11.7 Hz, PhCH2), 5.29 (d, 2H, J=11.6 Hz, PhCH2), 5.11 (s, 1H, Man4-H-1), 5.02 (d, 1H, GlcNAc1-H-1), 4.92 (s, 1H, Man4′-H-1), 4.65-4.52 (m, 3H, GlcNAc2, 5, 5′-H-1), 2.91-2.78 (m, 4H, Asn-βCH2, Cys-βCH2), 2.67 (dd, 2H, NeuAc7, 7′-H3eq), 2.39-2.31 (m, 2H, Gln-γCH3), 1.83 (dd, 2H, J=13.1, 13.1 Hz, NeuAc7, 7′-H-3ax), 1.38 (d, 3H, Ala-βCH3), 1.20 (d, 3H, J=6.51 Hz, Thr-γCH2), 1.17 (d, 3H, J=6.40 Hz, Thr-γCH3), 0.95-0.80 (m, 12H, Val-γCH3, Ile-γCH3, CH3)
ESI-MS: Calcd for C145H223N18O76S: [M+2H]2+1749.8, found. 1749.2
A peptide having a carboxyl group at the C-terminus (AcNH-His-Ala-Ala-Phe-COOH) was produced according to a method previously known in the art and used as a raw material. The peptide (0.5 mg, 1 μmol), MS 4A (10 mg), and benzyl mercaptan (3.7 mg, 30 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (0.14 ml) PyBOP (2.6 mg, 5 μmol) and DIPEA (0.85 μl, 5 μmol) were then added thereto, and the mixture was stirred for 17 hours. Diethyl ether (5 ml) was then added to the reaction solution to precipitate a compound. After filtration, the pellet was collected using 50 aqueous acetonitrile solution. This pellet was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA acetonitrile: water=90:10, gradient A:B −70:30→40:60, 15 min, flow rate: 0.1 ml/min) to obtain a peptide having benzyl thioester at the C-terminus (AcNH-His-Ala-Ala-Phe-COSBn).
The ratio of racemization was 2% or less.
ESI-MS: Calcd for C30H36N6O5S: [M+H]+592.3, found. 592.2
A benzyl thioester form of a peptide (AcNH-His-Ala-Ala-Phe-COSBn) was obtained by the same procedures as in Example 6 except that the reaction temperature was changed to 0° C. The obtained compound had the same mass spectrum as that obtained in Example 6. The ratio of racemization was 6%.
The peptide of AcNH-His-Ala-Ala-Phe-COOH (0.5 mg, 1 μmol), MS 4A (10 mg), and HOBt (0.7 mg, 5 μmol or 1.4 mg, 10 μmol) were stirred at 0° C. for 1 hour under argon flow in a DMF solvent (0.14 ml). DIPCI (0.8 μl, 5 μmol or 1.6 μl, 10 μmol) and benzyl mercaptan (3.7 mg, 30 μmol) were then added thereto. Subsequent procedures were performed in the same way as in Example 6 to obtain a benzyl thioester form of a peptide (AcNH-His-Ala-Ala-Phe-COSBn). Its yield was 75% for the use of 5 equivalents of HOBt and 98% for the use of 10 equivalents of HOBt. The obtained compound had the same mass spectrum as that obtained in Example 6. The ratio of racemization was 5% in either case.
A peptide having a carboxyl group at the C-terminus (AcNH-Cys-Cys-Glu-His-COOH) was produced according to a method previously known in the art and used as a raw material. The peptide (0.5 mg, 1 μmol), MS 4A (10 mg), and HOBt (1.4 mg, 10 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (0.14 ml). DIPCI (1.6 μl, 10 μmol) and benzyl mercaptan (3.7 mg, 30 μmol) were then added thereto for reaction. Subsequent procedures were performed in the same way as in Example 6 to obtain a benzyl thioester form of a peptide (AcNH-Cys-Cys-Glu-His-COSBn).
The ratio of racemization was 2% or less.
A trityl chloride resin (150 μmol) was used as a solid phase for solid-phase synthesis. Amino acids were sequentially condensed thereon to form a peptide. The amino acid condensation was performed in the same way as in Example 1.
Fmoc-Leu (159.0 mg, 0.45 mmol) was used as the first amino acid and condensed using DCM (0.9 ml) and DIEA (204.1 μl, 1.2 mmol).
Then, amino acids having a protected amino group were sequentially condensed using HOBt (101.3 mg, 0.75 mmol), DIPCI (115.4 μl, 0.75 mmol), and DMF (3 ml).
Fmoc-Pro (253.1 mg, 0.75 mmol), Fmoc-Arg(Pbf) (486.6 mg, 0.75 mmol), Fmoc-Tyr(tBu) (334.7 mg, 0.75 mmol), Fmoc-Glu(OtBu) (319.2 mg, 0.75 mmol), Fmoc-Met (278.6 mg, 0.75 mmol), Fmoc-Thr(tBu) (298.1 mg, 0.75 mmol), Fmoc-Cys(trt) (439.3 mg, 0.75 mmol), Fmoc-Ala (233.5 mg, 0.75 mmol), Fmoc-Pro (253.1 mg, 0.75 mmol), Fmoc-Lys(Boc) (351.4 mg, 0.75 mmol), Fmoc-Pro (253.1 mg, 0.75 mmol), Fmoc-Tyr(tBu) (334.7 mg, 0.75 mmol), Fmoc-Glu(OtBu) (319.2 mg, 0.75 mmol), Fmoc-Ser(tBu) (287.6 mg, 0.75 mmol), Fmoc-Cys(trt) (439.3 mg, 0.75 mmol), Fmoc-Asp(OtBu) (308.6 mg, 0.75 mmol), Fmoc-Val (254.6 mg, 0.75 mmol), Fmoc-Ser(tBu) (287.6 mg, 0.75 mmol), Fmoc-Val (254.6 mg, 0.75 mmol), Fmoc-Ala (233.5 mg, 0.75 mmol), Fmoc-Ala (233.5 mg, 0.75 mmol), Boc-Leu (187 mg, 0.75 mmol) were sequentially used for condensation as the amino acids having a protected amino group.
AcOH: DCM: MeOH=5:4:1 (1 ml) was added to the resin, and the mixture was reacted at room temperature for 3 hours. Hexane was added to the reaction solution. The resin was then removed by filtration. The resin was washed with MeOH, and the solution thereof was concentrated. The concentrated residue was further concentrated by the addition of benzene to obtain a 23-residue peptide having protected side chains ((Boc)Leu-Ala-Ala-Val-Ser(tBu)-Val-Asp(OtBu)-Cys(trt)-Ser(tBu)-Glu(OtBu)-Tyr(tBu)-Pro-Lys(Boc)-Pro-Ala-Cys(trt)-Thr(tBu)-Met-Glu(OtBu)-Tyr(tBu)-Arg(Pbf)-Pro-Leu-COOH) (10).
The obtained 23-residue peptide (10) (39 mg, 10 μmol), MS 4A, and benzyl mercaptan (35.5 μl, 300 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (1350 μl). PyBOP (26 mg, 50 μmol) and DIPEA (8.5 μl, 50 μmol) were then added thereto, and the mixture was stirred for 2 hours. Diethyl ether was then added to the reaction solution to precipitate a compound. After filtration, the pellet was collected using DMF. This pellet was concentrated. 95% aqueous TFA solution was added to the residue, and the mixture was stirred at room temperature for 2 hours and then freeze-dried.
The freeze-dried product was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA acetonitrile: water=90:10, gradient A:B=80:20→40:60, 15 min, flow rate: 1.0 ml/min) to produce a peptide having benzyl thioester at the C-terminus (Leu-Ala-Ala-Val-Ser-Val-Asp-Cys-Ser-Glu-Tyr-Pro-Lys-Pro-Ala-Cys-Thr-Met-Glu-Tyr-Arg-Pro-Leu-COSBn), which is represented by the formula (11).
Yield: 20 mg
Ratio of racemization: 2% or less
ESI-MS: Calcd for C118H181N27O34S4: [M+2H]+2 1325.1, found. 1325.3.
Cys(Thz) (46.7 mg, 0.2 mmol) was condensed to a 26-residue peptide bonded to a trityl resin (40 μmol) as a solid phase (Glu(OtBu)-Tyr(tBu)-Ala-Ser(tBu)-Pro-Gly-Lys(Boc)-Ala-Thr(tBu)-Glu(OtBu)-Val-Arg(Pbf)-Val-Thr(tBu)-Val-Leu-Arg(Pbf)-Gln(trt)-Ala-Asp(OtBu)-Ser(tBu)-Gln(trt)-Val-Thr(tBu)-Glu(OtBu)-Gly-CO-(Trityl resin)) (300 mg, product from Novabiochem) using HOBt (27.0 mg, 0.2 mmol), DIPCI (30.8 μl, 0.2 mmol), and DMF (1 ml).
1% TFA/DCM solution (1.0 ml) was added to the resin, and the mixture was reacted at room temperature for 2 minutes. The resin was removed by filtration, and the reaction solution was neutralized with pyridine. This reaction was repeated 5 times. The reaction solution was concentrated, and water was then added thereto to precipitate a peptide having protected side chains. The pellet was collected using a DMF solution and concentrated to obtain a 27-residue peptide having protected side chains (Cys(Thz)-Glu(OtBu)-Tyr(tBu)-Ala-Ser(tBu)-Pro-Gly-Lys(Boc)-Ala-Thr(tBu)-Glu(OtBu)-Val-Arg(Pbf)-Val-Thr(tBu)-Val-Leu-Arg(Pbf)-Gln(trt)-Ala-Asp(OtBu)-Ser(tBu)-Gln(trt)-Val-Thr(tBu)-Glu(OtBu)-Gly-COOH) (12).
The obtained 27-residue peptide (12) (10 μmol), MS 4A (20 mg), and thiophenol (30.6 μl, 300 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (1.36 μl). PyBOP (8.6 mg, 50 μmol) and DIPEA (26.0 μl, 50 μmol) were then added thereto, and the mixture was stirred for 4 hours. Diethyl ether was then added to the reaction solution to precipitate a compound. After filtration, the pellet was collected using DMF. This pellet was concentrated. 95% aqueous TFA solution was added to the concentrate, and the mixture was stirred at room temperature for 2 hours. The resin was removed by filtration, and the reaction solution was concentrated. The concentrate was then dissolved in 50% aqueous acetonitrile solution and freeze-dried. The freeze-dried product was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA acetonitrile: water=90:10, gradient A:B=95:5→25:75, 15 min, flow rate: 0.1 ml/min) to produce a peptide having phenyl thioester at the C-terminus (Cys(Thz)-Glu-Tyr-Ala-Ser-Pro-Gly-Lys-Ala-Thr-Glu-Val-Arg-Val-Thr-Val-Leu-Arg-Gln-Ala-Asp-Ser-Gln-Val-Thr-Glu-Gly-COSPh), which is represented by the formula (13).
Yield: 5 mg
Ratio of racemization: 11 or less
ESI-MS: Calcd for C128H204N36C43S2: [M+2H]+2 1499.7, found. 1499.8.
Cys(Thz) (46.7 mg, 0.2 mmol) was condensed to a 17-residue peptide bonded to a trityl resin (40 μmol) as a solid phase (Ala-Ala-Thr(tBu)-Tyr(tBu)-Met-Met-Gly-Asn-Glu(OtBu)-Leu-Thr(tBu)-Phe-Leu-Asp(OtBu)-Asp(OtBu)-Ser(tBu)-Gly-CO-(Trityl resin)) (500 mg, product from Novabiochem) using HOBt (27.0 mg, 0.2 mmol), DIPCI (30.8 μl, 0.2 mmol), and DMF (1 ml).
1% TFA/DCM solution was added to the resin, and the mixture was reacted at room temperature for 2 minutes. The resin was removed by filtration, and the reaction solution was neutralized with pyridine. This reaction was repeated 5 times. The reaction solution was concentrated, and water was then added thereto to precipitate a peptide having protected side chains. The pellet was collected using a DMF solution and concentrated to obtain a 18-residue peptide having protected side chains (Cys(Thz)-Ala-Ala-Thr(tBu)-Tyr(tBu)-Met-Met-Gly-Asn-Glu(OtBu)-Leu-Thr(tBu)-Phe-Leu-Asp(OtBu)-Asp(OtBu)-Ser(tBu)-Gly-COOH) (14).
The obtained 18-residue peptide (14) (10 μmol), MS 4A (20 mg), and benzyl mercaptan (36.0 μl, 300 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (1.36 μl). PyBOP (8.6 mg, 50 μmol) and DIPEA (26.0 μl, 50 μmol) were then added thereto, and the mixture was stirred for 4 hours. Diethyl ether was then added to the reaction solution to precipitate a compound. After filtration, the pellet was collected using DMF. This pellet was concentrated. 95% aqueous TFA solution (containing ethanedithiol (EDT)) was added to the concentrate, and the mixture was stirred at room temperature for 2 hours. The resin was removed by filtration, and the reaction solution was concentrated. The concentrate was then dissolved in 50% aqueous acetonitrile solution and freeze-dried. The freeze-dried product was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA/acetonitrile: water=90:10, gradient A:B=95:5→25:75, 15 min, flow rate: 0.1 ml/min) to produce a peptide having benzyl thioester at the C-terminus (Cys(Thz)-Ala-Ala-Thr-Tyr-Met-Met-Gly-Asn-Glu-Leu-Thr-Phe-Leu-Asp-Asp-Ser-Gly-COSBn), which is represented by the formula (15).
Yield: 4 mg
Ratio of racemization: 1% or less
ESI-MS: Calcd for C89H129N19O29S4: [M+2N]+2 2056.8, found. 2057.2.
1% TFA/DCM solution was added to a 22-residue peptide bonded to a trityl resin (20 μmol) as a solid phase ((Boc)Lys(Boc)-Ala-Met-His(trt)-Val-Ala-Gln(trt)-Pro-Ala-Val-Val-Leu-Ala-Ser(tBu)-Ser(tBu)-Arg(Pbf)-Gly-Ile-Ala-Ser(tBu)-Phe-Gly-CO-(Trityl resin)) (250 mg, product from Novabiochem), and the mixture was reacted at room temperature for 2 minutes. The resin was removed by filtration, and the reaction solution was neutralized with pyridine. This reaction was repeated 5 times. The reaction solution was concentrated, and water was then added thereto to precipitate a peptide having protected side chains. The pellet was collected using a DMF solution and concentrated to obtain a 22-residue peptide having protected side chains ((Boc)Lys(Boc)-Ala-Met-His(trt)-Val-Ala-Gln(trt)-Pro-Ala-Val-Val-Leu-Ala-Ser(tBu)-Ser(tBu)-Arg(Pbf)-Gly-Ile-Ala-Ser(tBu)-Phe Gly-COOH) (16).
ESI-MS: Calcd for C170H245N29O34S2: [M+2H]+2 1652.0, found. 1651.6
The obtained 22-residue peptide (16) (7.5 mg, 2.2 μmol), MS 4A (20.0 mg), and thiophenol (6.7 μl, 11.0 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (300 μl). PyBOP (5.7 mg, 66.0 μmol) and DIPEA (1.7 μl, 11.0 μmol) were then added thereto, and the mixture was stirred for 4 hours. Diethyl ether was then added to the reaction solution to precipitate a compound. After filtration, the pellet was collected using DMF. This pellet was concentrated. 95% aqueous TFA solution was added to the concentrate, and the mixture was stirred at room temperature for 2 hours. The resin was removed by filtration, and the reaction solution was concentrated. The concentrate was then dissolved in 50% aqueous acetonitrile solution and freeze-dried. The freeze-dried product was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.1% aqueous TFA solution, B: 0.1% TFA/acetonitrile: water=90:10, gradient A:B=95:5→25:75, 15 min, flow rate: 0.1 ml/min) to produce a peptide having phenyl thioester at the C-terminus (Lys-Ala-Met-His-Val-Ala-Gln-Pro-Ala-Val-Val-Leu-Ala-Ser-Ser-Arg-Gly-Ile-Ala-Ser-Phe-Gly-COSPh), which is represented by the formula (17).
Yield: 2 mg
Ratio of racemization: 1 or less
ESI-MS: Calcd for C103H165N29O26S2: [M+2H]+2 1145.9, found. 1145.7.
An HMPB-PEGA resin (50 μmol) was obtained in the same way as in Example 1 and used as a solid phase for solid-phase synthesis. Amino acids were condensed thereon to form a peptide. The amino acid condensation was performed in the same way as in Example 1.
Fmoc-Phe (96.9 mg, 0.25 mmol) was used as the first amino acid and condensed using MSNT (74.0 mg, 0.25 mmol), N-methylimidazole (14.9 μl, 187.5 μmol), and DCM (1 ml).
Then, amino acids having a protected amino group were sequentially condensed using HOBt (33.7 mg, 0.25 mmol), DIPCI (38.5 μl, 0.25 mmol), and DMF (1 ml).
Fmoc-Asn (88.6 mg, 0.25 mmol), Fmoc-Cys (trt) (146.4 mg, 0.25 mmol), Fmoc-Lys(Boc) (117.1 mg, 0.25 mmol), Fmoc-Asn (88.6 mg, 0.25 mmol), Fmoc-Gly (74.3 mg, 0.25 mmol), Fmoc-Tyr(tBu) (114.9 mg, 0.25 mmol), Fmoc-Thr(tBu) (99.4 mg, 0.25 mmol), Fmoc-Lys(Boc) (117.1 mg, 0.25 mmol) were used as the amino acids having a protected amino group to form a 9-residue peptide of Phe-Asn-Cys(trt)-Lys(Boc)-Asn-Gly-Tyr(tBu)-Thr(tBu)-Lys(Boc) on the solid-phase resin.
After washing with DCM and DMF, the resin corresponding to 3 μmol of the 9-residue peptide was transferred to an Eppendorf tube.
Glycosylated asparagine (12 mg, 6 μmol) represented by the following formula (18) and DEPBT (3 mg, 9 μmol) dissolved in DMF: DMSO=4:1 (201 μl) were placed in the Eppendorf tube.
DIPEA (1.02 μl, 6 μmol) was added thereto, and the mixture was stirred at room temperature for 20 hours. After washing with DMF, the Fmoc group was removed with 20% piperidine to form a 10-residue peptide of Phe-Asn-Cys(trt)-Lys(Boc)-Asn-Gly-Tyr(tBu)-Thr(tBu)-Lys(Boc)-Asn(Oligosaccharide chain) on the solid-phase resin.
Amino acids were further condensed to this 10-residue peptide in the same way as above using HOBt, DIPCI, and DMF.
Fmoc-Asp (1.7 mg, 0.015 mmol), Fmoc-Ser(tBu) (1.9 mg, 0.015 mmol), Fmoc-Gly (1.5 mg, 0.015 mmol), and Boc-Cys(Thz) (1.7 mg, 0.015 mmol) were sequentially used for condensation as the amino acids.
AcOH: TFE −1:1 (1 ml) was added to the resin, and the mixture was reacted at room temperature for 20 hours. The resin was removed by filtration, and the reaction solution was concentrated to obtain a 14-residue peptide having protected side chains (Cys(Thz)-Gly-Ser(tBu)-Asp-Asn(Oligosaccharide chain)-Lys(Boc)-Thr(tBu)-Tyr(tBu)-Gly-Asn-Lys(Boc)-Cys(trt)-Asn-Phe-COOH) (19).
The obtained 14-residue peptide (19) (11.7 mg, 3 μmol), MS 4A, and benzyl mercaptan (10.6 μl, 90 μmol) were stirred at −20° C. for 1 hour under argon flow in a DMF solvent (405 μl). PyBOP (7.8 mg, 15 μmol) and DIPEA (2.6 μl, 15 μmol) were then added thereto, and the mixture was stirred for 2 hours. Diethyl ether was then added to the reaction solution to deposit the compound of interest as a pellet. This pellet was separated from the solution by filtration, and the pellet remaining on the filter paper was dissolved in 50% aqueous acetonitrile solution and collected. The collected solution was concentrated. 95% aqueous TFA solution was added to the concentrate, and the mixture was stirred at room temperature for 2 hours and then freeze-dried. The freeze-dried product was purified by HPLC (Cadenza column C18 75×4.6 mm, developing solvent A: 0.01% aqueous TFA solution, B: 0.01% TFA/acetonitrile: water=90:10, gradient A:B=80:20→40:60, 15 min, flow rate: 1 ml/min) to produce a peptide having benzyl thioester at the C-terminus (Cys(Thz)-Gly-Ser-Asp-Asn(Oligosaccharide chain)-Lys-Thr-Tyr-Gly-Asn-Lys-Cys-Asn-Phe-COSBn), which is represented by the formula (20).
Yield: 3 mg
The ratio of racemization was 2% or less.
ESI-MS: Calcd for C123H203N23O67S3: [M+2H]+2 1646.1, found. 1646.4.
A benzyl thioester form of a peptide (AcNH-His-Ala-Ala-Phe-COSBn) was obtained by the same procedures as in Example 7 except that PyBOP was changed to DEPBT (1.5 mg, 5 μmol) or HBTU (1.9 mg, 5 μmol) its yield was 10 for the use of DEPBT and less than 10% for the use of HBTU.
A benzyl thioester form of a peptide (AcNH-Cys-Cys-Glu-His-COSBn) was obtained in the same way as in Example except that the reaction temperature was changed to 30° C.
The ratio of racemization was 40%.
According to a process of the present invention, a peptide having a carboxyl group at the C-terminus, with protecting groups in the peptide side chains maintained, can be produced for a non-glycosylated peptide or even for a glycopeptide having an oligosaccharide chain, particularly, an oligosaccharide chain with an unprotected hydroxyl group, without influencing its oligosaccharide chain structure. Furthermore, a peptide thioester compound with little C-terminal racemization of the peptide can be produced.
The obtained peptide thioester compound can be allowed to act on a peptide fragment having Cys as an N-terminal amino acid to thereby achieve polymerization. As a result, large glycoproteins having an oligosaccharide chain with a single structure can also be produced.
| Number | Date | Country | Kind |
|---|---|---|---|
| 2006-092569 | Mar 2006 | JP | national |
| Filing Document | Filing Date | Country | Kind | 371c Date |
|---|---|---|---|---|
| PCT/JP2007/057508 | 3/28/2007 | WO | 00 | 11/25/2008 |
