METHOD FOR SUPPRESSING AN IMMUNE RESPONSE

Abstract
The invention is in the field of molecular immunology, more in particular in the field of medical treatment of animals such as humans suffering from unwanted immune reactions. The invention relates to methods for the treatment of unwanted immune reactions and provides means and methods for suppressing an immune response. The present invention relates in particular to regulatory T cells and methods of long-term, culture-expanding, activating and using same in immunotherapy and for the suppression of autoimmune responses, allergies and inflammatory diseases. The invention provides a sia alpha 2,3-conjugated antigen for use in the suppression of an immune response in a patient in need of such a treatment.
Description
FIELD OF THE INVENTION

The invention is in the field of molecular immunology, more in particular in the field of medical treatment of patients suffering from unwanted immune reactions. The invention relates to methods for the treatment of unwanted immune reactions and provides means and methods for suppressing an immune response. The present invention relates in particular to regulatory T cells and methods of long-term, culture-expanding, activating and using same in immunotherapy and for the suppression of autoimmune responses, allergies and inflammatory diseases.


BACKGROUND OF THE INVENTION

It has long been thought that suppressor cells play a role in the progression of cancer (Dye et al., J. Exp. Med. 154:1033-1042 (1981)). In fact, active suppression by T regulatory cells plays an important role in the down-regulation of T cell responses to foreign and self-antigens.


T cells are a class of lymphocytes, having specific T cell receptors (TCRs) that are produced as a result of gene rearrangement. T cells have diverse roles, which are accomplished by the differentiation of distinct subsets of T cells, recognizable by discrete patterns of gene expression. Several major T cell subsets are recognized based on receptor expression, such as TCR-[alpha]/[beta], and TCR [gamma]/[delta] and invariant natural killer cells. Other T cell subsets are defined by the surface molecules and cytokines secreted therefrom.


For example, T helper cells (CD4 cells) secrete cytokines, and help B cells and cytotoxic T cells to survive and carry out effector functions. Cytotoxic T cells (CTLs) are generally CD8 cells, and they are specialized to kill target cells, such as infected cells or tumor cells. Natural killer (NK) cells are related to T cells, but do not have TCRs, and have a shorter lifespan, although they do share some functions with T cells and are able to secrete cytokines and kill some kinds of target cells.


Human and mouse peripheral blood contains a small population of T cell lymphocytes that express the T regulatory phenotype (“Treg”), i.e., positive for both CD4 and CD25 antigens (i.e., those CD4-positive T cells that are also distinctly positive for CD25). First characterized in mice, where they constitute 6-10% of lymph node and splenic CD4-positive T cell populations, this population of CD4-positive CD25-positive cells represents approximately only 5-10% of human peripheral blood mononuclear cells (PBMC), or 2-7% of CD4-positive T cells, although some donors exhibit a more distinct population of CD4-positive and CD25-positive cells. About 1-2% of human peripheral blood PBMCs are both CD4 positive (CD4-positive) and CD25 brightly positive (CD25-positive) cells.


There are several subsets of Treg cells (Bluestone et al., Nature Rev. Immunol. 3:253 (2003)). One subset of regulatory cells develops in the thymus. Thymic derived Treg cells function by a cytokine-independent mechanism, which involves cell to cell contact (Shevach, Nature Rev. Immunol 2:389 (2002)). They are essential for the induction and maintenance of self-tolerance and for the prevention of autoimmunity (Shevach, Annu. Rev. Immunol. 18:423-449 (2000); Stephens et al., 2001; Turns et al., 2001; Thornton et al., 1998; Salomon et al., Immunity 12:431-440 (2000); Sakaguchi et al., Immunol. Rev. 182:18-32 (2001)).


These professional regulatory cells prevent the activation and proliferation of autoreactive T cells that have escaped thymic deletion or recognize extrathymic antigens, thus they are critical for homeostasis and immune regulation, as well as for protecting the host against the development of autoimmunity (Suri-Payer et al., J. Immunol. 157:1799-1805 (1996); Asano et al., J. Exp. Med. 184:387-396 (1996); Bonomo et al., J. Immunol. 154:6602-6611 (1995); Willerford et al., Immunity 3:521-530 (1995); Takahashi et al., Int. Immunol. 10:1969-1980 (1998); Salomon et al., Immunity 12:431-440 (2000); Read et al., J. Exp. Med. 192:295-302 (2000). Thus, immune regulatory CD4-positive CD25-positive T cells are often referred to as “professional suppressor cells.”


However, Treg cells can also be generated by the activation of mature, peripheral CD4-positive T cells. Studies have indicated that peripherally derived Treg cells mediate their inhibitory activities by producing immunosuppressive cytokines, such as transforming growth factor-beta (TGF-[beta]) and IL-10 (Kingsley et al., J. Immunol. 168:1080 (2002); Nakamura et al., J. Exp. Med. 194:629-644 (2001)). After antigen-specific activation, these Treg cells can non-specifically suppress proliferation of either CD4-positive or CD25-positive T cells (demonstrated by FACS sorting in low dose immobilized anti-CD3 mAb-based co-culture suppressor assays by Baecher-Allan et al., J. Immunol. 167(3):1245-1253 (2001)).


Studies have shown that CD4-positive CD25-positive cells are able to inhibit anti-CD3 stimulation of T cells when co-cultured with autologous antigen presenting cells (APC), but only through direct contact (Stephens et al., Eur. J. Immunol. 31:1247-1254 (2001); Taams et al., Eur. J. Immunol. 31:1122-1131 (2001); Thornton et al., J. Exp. Med. 188:287-296 (1998)). However, in mice this inhibitory effect was not able to overcome direct T cell stimulation with immobilized anti-CD3 or with anti-CD3/CD28 (Thornton et al., 1998). In previous reports, human CD4-positive CD25-positive T cells isolated from peripheral blood required pre-activation in order to reveal their suppressive properties, as direct culture of the regulatory cells was generally insufficient to mediate suppressive effects (Dieckmann et al., J. Exp. Med. 193:1303-1310 (2001)).


Others have also found that the inhibitory properties of human CD4-positive CD25-positive T cells are activation-dependent, but antigen-nonspecific (Jonuleit et al., J. Exp. Med. 193:1285-1294 (2001); Levings et al., J. Exp. Med. 193(11):1295-1302 (2001); Yamagiwa et al., J. Immunol. 166:7282-7289 (2001)), and have demonstrated constitutive expression of intracellular stores of cytotoxic T lymphocyte antigen-4 (CTLA-4) (Jonuleit et al., 2001; Read et al., J. Exp. Med. 192:295-302 (2000); Yamagiwa et al., 2001; Takahashi et al., J. Exp. Med. 192:303-310 (2000)). Moreover, after T-cell receptor (TCR)-mediated stimulation, CD4-positive CD25-positive T cells suppress the activation of naive CD4-positive CD25-negative T cells activated by alloantigens and mitogens (Jonuleit et al., 2001).


Both mouse and human Treg cells express CTLA-4, however the role of CTLA-4 in tolerance induction and its capacity to impart inhibitory function to regulatory CD4-positive CD25-positive T cells is controversial. CTLA-4 (also known as CD152) is a homolog of CD28 and is a receptor for the CD80 and CD86 ligands. CTLA-4 inhibits T cell responses in an antigen and TCR-dependent manner. T cells that have impaired CTLA-4 function have enhanced T cell proliferation and cytokine production. In contrast, enhanced CTLA-4 function leads to inhibited cytokine secretion and impaired cell cycle progression both in vitro and in vivo. In the mouse, CTLA-4 is not required for suppressive function of the Treg cells, as opposed to its requirement in humans.


A recent study has shown that Treg cells grow extensively in vivo (Tang, J. Immunol. 171:3348 (2003)), while others have suggested that the efficacy of therapeutic cancer vaccination in mice can be enhanced by removing CD4-positive CD25-positive T cells (Sutmuller et al., J. Exp. Med. 194:823-832 (2001)). Studies have also indicated that depletion of regulatory cells led to increased tumor-specific immune responses and eradication of tumors in otherwise non-responding animals (Onizuka et al., Cancer Res. 59:3128-3133 (1999); Shimizu et al., J. Immunol. 163:5211-5218 (1999)). Susceptible mouse strains that were made CD4-positive CD25-positive deficient by neonatal thymectomy were shown to develop a wide spectrum of organ-specific autoimmunities that could be prevented by an infusion of CD4-positive CD25-positive T cells by 10-14 days of age (Suri-Payer et al., J. Immunol. 160:1212-1218 (1998)). That study also found that CD4-positive CD25-positive T cells could inhibit autoimmunity induced by autoantigen-specific T cell clones. The transfer of CD4-positive CD25-negative T cells into nude mice also reportedly led to the development of autoimmune disorders which could be prevented by the co-transfer of CD4-positive CD25-positive T cells using lymphocytes first depleted of CD25-positive cells (Sakaguchi et al., J. Immunol. 155:1151-1164 (1995)).


Hereafter, the transcription factor Forkhead box P3 (FoxP3) was related to the generation and fuction of naturally occurring Treg. Mice in which FoxP3 protein was deleted due to a mutation in the FoxP3 gene, developed severe autoimmune syndroms and wasting diseases (socalled “scurfy” mice; Brunkow et al., Nat Genet. 27:68-73, 2001). This seminal discovery enabled to attribute the cause of the X-linked IPEX syndrome (Immunodysregulation, Polyendocrinopathy, and Enteropathy, X-linked) in humans to a mutation in the FoxP3 gene (Bennett et al. Nat Genet. 27: 20-21; 2001). Later studies also demonstrated the presence of FoxP3 in some adaptive Treg subsets.


However, data also indicate that the role of CD4-positive CD25-positive cells is not limited to self-tolerance and the prevention of autoimmunity. While few studies have addressed the role of CD4-positive CD25-positive T cells in alloresponses or in transplantation, CD4-positive CD25-positive T cells have been reported to prevent allograft rejection, both in vitro and in vivo (Hara et al., J. Immunol. 166:3789-3796 (2001); Taylor et al., J. Exp. Med. 193:1311-1318 (2001)). Allogeneic stimulation of human T cell proliferation is also blocked by CD4-positive CD25-positive T cells (Yamagiwa et al., 2001), whereas Wood's laboratory has shown that CD4-positive CD25-positive T cells suppress mixed lymphocyte responses (MLR), but only when the alloantigen was presented by the indirect, and not the direct, pathway of allorecognition (Hara et al., 2001). It is likely that direct antigen presentation occurs between the regulatory T cells and the anti-CD3/28 stimulated responder T cells, as the sorted CD4-positive 25-positive cells are highly depleted of professional APC.


The absence of Tregs or depletion of Tregs is shown to result in the development of auto-immunity, such as Type 1 Diabetes, Inflammatory bowel disease (IBD), thyroididites, Multiple Sclerosis and Systemic lupus erythematosus (SLE). Moreover the disease can be reversed by the adoptive transfer of CD4+CD25+Treg cells. Besides a deficiency in Treg number, T cell regulation in autoimmunity has also been shown to fail due to a deficiency in the function of Treg to inhibit effector T cells. It is clear that defects in Treg cell number and function can contribute to disease and therapies directed at these defects have the potential to prevent and also cure these diseases. Animal studies suggest that an increase in Treg cell number at the site of inflammation is likely to be therapeutic in autoimmunity. This can be achieved by adoptive transfer of in-vitro expanded autologous Tregs or by the use of agents that promote Treg cell proliferation, survival and induction. The identity of factors that influence cell number and function of Tregs are not clearly identified at the moment, and may be crucial for the application of autoimmune diseases.


Antigen Presenting cells such as DC are known for their capacity to differentiate naive CD4 T cells into different lineage of T cells, such as Th1, Th2, Th17 and Treg. Recent studies demonstrate that a population of gut DC, particularly lamina propria CD103+ DCs, can promote the conversion of naive CD4+ T cells into FoxP3+ iTregs through the secretion of retinoic acid (RA) in conjunction with TGF-β. DC express various receptors such as CD80/86 that can be bound by CTLA-4 on Tregs that triggers the induction of the enzyme indoleamine 2,3 dioxygenase (IDO) in DC. IDO converts tryptophan into pro-apoptotic metabolites that suppress effector T cells. On the other hand engagement of MHC class II on DC by LAG3 on Tregs suppresses APC maturation and reduces their ability to activate T cells. These findings demonstrate that DC may differentiate CD4 T cells into Tregs. However, little is still known on the mechanism and signals that reach DC to instruct CD4 naïve T cells to differentiate into Tregs.


Patients suffering from autoimmune diseases or inflammatory diseases would greatly benefit from treatments wherein the Treg numbers or function are improved.


Applicants have established that the uptake of specific glycosylated antigens by DCs regulates the number and function of Tregs. This opens new opportunities for the treatment of unwanted immune reactions and leads to new methods and means for the treatment of autoimmune diseases and inflammatory diseases.


SUMMARY OF THE INVENTION

We found that sialic acids on self and non-self antigens play an important role in the induction of tolerance. As a model system, applicants investigated the well-known food allergy against ovalbumin (OVA). Ovalbumin is the major allergen in chicken egg. In humans, CD4 T-cell responses against OVA have been detected (Heine et al, Currebt Allergy and Asthma reports 6, 145-152, 2006). To study responses in mice, T-cell receptor transgenic mice have been generated that express a OVA-specific TCR on all CD4 T-cells (OT-II transgenic mice). These mice are widely used.)


We therefore set out to modify the model antigen OVA with Neu5Aca2-3Galβ1-4Glc, creating sia-alpha 2,3-OVA and assessed the functional consequences on CD4+ T-cell activation and differentiation upon co-culture with sia-2,3-OVA-loaded DC.


It was established that such a sia alpha 2,3-conjugated antigen was capable of suppressing an immune response and could therefore advantageously be used in the suppression of an immune response in a patient allergic to ovalbumin.


In a more general concept, the invention therefore relates to a sia alpha 2,3-conjugated antigen for use in the suppression of an immune response in a patient in need of such a treatment.


DETAILED DESCRIPTION OF THE INVENTION

Sialic acids are the most prevalent terminal monosaccharide on the surface of mammalian cells. The most common mammalia sialic acids are N-acetylneuraminic acid (Neu5Ac) and N-glycolyneuraminic acid (Neu5Gc). Humans are unable to synthesize Neu5Gc due to an irreversible mutation in the gene encoding the enzyme responsible for conversion of Neu5Gc from Neu5Ac. Sialic acids may be α2,3-, α2,6- or α2,8-linked to the underlying glycan. Sialic acids are often found at the outer ends of surface exposed oligosaccharide chains, attached to proteins and lipids. In this terminal position, they serve as ligands for lectins such as Sialic acid binding Ig-like lectins (Siglecs).


We started by assessing whether conjugation of alpha-sia-2,3 to OVA (hereafter referred to as OVA-sia-2,3) essentially affected OVA-specific CD4+ T-cell responses in-vitro. Hereto, naive CD4+CD62Lhi CD25− T-cells were isolated from OT-II mice and co-cultured with BMDC that had been loaded with OVA-sia-2,3 or native OVA for 4 h. Six days later, CD4 T helper differentiation was analysed by staining for FoxP3 or intracellular IFNγ. We observed that naive CD4+ T-cells were converted into FoxP3+ T-cells when primed by DC loaded with OVA-sia-2,3 (FIG. 1A, upper panels).


DC loaded with native OVA did not prime T-cells to differentiate into Treg. By contrast, these T-cells were converted into effector T-cells as shown by IFNγ staining (FIG. 1A, lower panels). This was confirmed when examining the supernatant of these cultures (FIG. 1B, upper panel). In addition high levels of the T-cell effector cytokines TNFα and IL-6 were detected in these cultures. By contrast, these were virtually absent in cultures of T-cells primed by OVA-sia-2,3 DC. Since the generation of FoxP3+ Treg is closely related to Th17 generation, we assessed the presence of Th17 cells by analysing IL17A in the supernatant. No significant amounts of IL17A were detectable in the supernatant of OVA-sia2,3 DC-T-cell co-cultures.


Moreover, we observed that the amount of Th1 effector cytokines IFNγ and TNFα was still significantly lower when naïve T-cells were primed by OVA-sia-2,3-DC than by OVA-DC in the presence of Th1- or Th17-promoting stimuli (FIG. 1C). Only in the presence of the Th17-promoting agent prostaglandin (PGN) high levels of IL17A were detected in cultures with OVA-sia-2,3-DC. No significant amounts of IL10 were detected in the DC-T-cell co-cultures (data not shown).


Together, these data show that priming of naive CD4 T-cells by OVA-sia2,3 loaded DC promotes de novo generation of FoxP3+ T-cells. Furthermore, the generation of effector T-cells is prevented, even in a Th1- or Th17-promoting environment. However, more IL17A secreting T-cells are present when naïve CD4+ T-cells are primed by OVA-sia-2,3 loaded DC in a Th17-skewing milieu.


As a control, the following experiment was performed. The generation of FoxP3+ T cells in the absence of effector T-cells upon priming of naive CD4 T-cells with OVA-sia-2,3 loaded DC could theoretically be the result of low amounts of antigen presented by the DC in MHC class II molecules. To address this, we incubated BM DC with fluorescent labeled OVA-sia-2,3 and assessed both binding as well as uptake at various time points. It is clear from FIGS. 2A and B that modification of OVA with sia-2,3 results in significant better binding and uptake by BMDC compared to nonmodified OVA. Thus, the uptake of OVA-sia-2,3 by BMDC is increased.


Despite this increased uptake, it is possible that OVA-sia-2,3 is rapidly degraded upon internalization. To rule out this possibility, we subsequently used these antigen-loaded DC in an antigen-presentation assay with purified OVA-specific CD4+ T-cells. Native OVA is well presented in MHC class II molecules as shown by significant T-cell proliferation (FIG. 2C). The proliferation of the CD4+ T-cells was only significantly different when a high dose of sialic acid-conjugated OVA was used. At lower doses no significant difference in CD4 T-cell proliferation induced by DC loaded with native OVA or sia-2,3-OVA was detected. These data may indicate that OVA-sia-2,3 enters a similar processing and presentation pathway as native OVA.


In view of the data on antigen uptake and presentation, we hypothesized that uptake of OVA-sia-2,3 triggers a signaling cascade, resulting in modulation of the DC phenotype. Therefore we examined the expression of costimulatory molecule transcripts in BMDC upon 6h incubation with OVA-sia-2,3 and compared it with expression in BMDC incubated with native OVA or BMDC incubated in medium only. From FIG. 3A it is clear that the expression of CD80 and CD86 is lower on BMDC incubated with OVA-sia-2,3 than with native OVA, albeit not significantly. Similar data were obtained for CD40 and MHC-class II (data not shown). Furthermore, molecules associated with tolerance were not distinctively or higher expressed by the OVA-sia-2,3-loaded BMDC. Moreover, the expression of PD-L2 seems to be decreased on OVA-sia-2,3-loaded BMDC.


Analysis of cytokine mRNA expression revealed a significant lower expression of IL1β levels in OVA-sia-2,3-loaded DC (FIG. 3B). By contrast, the expression of IL23p19, which can associate with the p40 subunit of IL12 to form IL23, was significantly elevated in OVA-sia-2,3-loaded DC. Furthermore examination of mRNA encoding the anti-inflammatory cytokines IL10 or TGFb revealed no significant difference (FIG. 3B).


Together, these data indicate that uptake of OVA-sia-2,3 in the absence of additional stimuli does not result in expression of well known tolerogenic markers. We have therefore demonstrated that a sia-2,3 modified antigen taken up by DC modifies the differentiation of naive CD4 T cells into Tregs. Our data demonstrate that this is not the result of low dose of antigen presentation, as high antigen dose were taken up, similar as un-modified antigen or sia-2,6 modified antigens. We have analysed whether the uptake of sia-2,3 may modify the tolerogenic phenotype of DC, but we did not see any major alterations in the expression of CD80/CD86, CD40 or MHC class II. We observed that the expression of the co-stimulatory molecule PDL-2 was lower on DC that had taken up OVA-sia-2,3 compared to native OVA. Upon analysis of the cytokine production by DC we observed that the inflammatory cytokine profile IFNy, IL-6 and TNFa) was reduced by DC upon uptake of OVA-sia-2,3, illustrating a potentiation towards an anti-inflammatory signature. When analysing the anti-inflammatory cytokine profile we observed little enhanced production of TGFb and no alterations in IL-10 and IL17A.


Our finding that alpha-2,3 sialylation of antigen enhances the differentiation of antigen specific FoxP3+ regulatory T cells, sheds new light on how on the mechanism and signals that reach DC to instruct CD4 naive T cells to differentiate into Tregs. It also enables a whole new area of treatment for autoimmune diseases and inflammatory diseases. The invention therefore relates to a sia alpha 2,3-conjugated antigen for use in the suppression of an immune response in a patient in need of such a treatment.


The term sia-alpha 2,3 conjugated antigen refers to an antigen such as a protein, polypeptide, lipid or otherwise, covalently attached to the sialic acid Neu5Acα2-3Galβ1-4Glc, creating sia-alpha 2,3-conjugated antigen.


Such an antigen may effectively be used for the treatment of autoimmune diseases such as multiple sclerosis, rheumatoid arthritis, diabetes type 1, gastritis and inflammatory bowel disease. It may also be used for the treatment of inflammatory diseases, such as psoriasis, allergy, Alzheimer's disease, Parkinson's disease and transplantation.


In another embodiment, the invention relates to a method for suppressing an immune response in a patient in need of such a treatment wherein a sial alpha 2,3 modified antigen is administered to said patient.


It may be envisaged that the immune response is even better suppressed when disease-specific antigens are sialylated and administered to patients. The invention therefore also relates to a sia alpha 2,3-conjugated antigen for use in the suppression of an immune response in a patient in need of such a treatment wherein the antigen is disease-specific. Several examples of disease specific antigens that work well in the methods according to the invention are listed in table 1.










TABLE 1





Disease
Disease-specific antigens







Multiple Sclerosis
Myelin, MOG


Rheumatoid Arthritis
citrullinated proteins; human cartilage



gp39; HSP70, HSP60; type II collagen


Type 1 Diabetes
preproinsulin; GAD65; IGRP; IA-2;



preproIAPP; Zinctransporter 8


Allergies
Animal products Fel d 1 (cat allergy) fur



and dander; cockroach calyx; wool; dust



mite excretion. penicillin; sulfonamides;



salicylates local anaesthetics, celery and



celeriac; corn or maize; eggs, fruit;



pumpkin, beans; peas; peanuts;



soybeans; milk; seafood; sesame; soy;



tree nuts; pecans; almonds; wheat. bee



sting venom; wasp sting venom; mosquito



stings, latex, metal, Plant pollens (hay



fever) grass, ryegrass, timothy-grass



weeds, ragweed, plantago, nettle,



artemisia vulgaris, chenopodium album,



sorrel trees, birch, alder, hazel,



hornbeam, aesculus, willow, poplar,



platanus, tilia, olea, Ashe juniper.









In this way one would modify specific antigens, related to the disease, as proteins, or peptides, or as nanoparticules or encapsulated particules, and use the alpha 2,3 sialic acid as the glycan structure that can ex-vivo or in-vivo instruct APC such as DC to start an anti-inflammatory program and enhance the induction of Tregs that dampen the inflammations and will recover the disease.





LEGEND TO THE FIGURES


FIG. 1: Priming of naive CD4 T-cells with OVA-sia-2,3-loaded DC results in de novo generation of FoxP3+ T-cells and prevents effector T-cell formation.


A. Immature BMDC were incubated with 50 ug/ml OVA or OVA-sia-2,3 for 4 hours. After extensive washing, naive OVA-specific CD4 T-cells were added at a 1:10 ratio. On day 6 of culture, cells were harvested, fixed and permeabilised and stained for CD4 and FoxP3 (upper panel) or, after 6 h stimulation with PMA/ionomycin/BrefeldinA, for IFNγ (lower panel). Results are representative of five independent experiments. B, supernatants of these cultures were examined for the presence of effector T-cell cytokines (IFNγ, TNFα, 1L6, and II17A) as well as the anti-inflammatory cytokine IL10. C. The amount of effector T-cell cytokines IFNγ and TNFα is also reduced when CpG or PGN were added to co-cultures containing OVA-sia-2,3-loaded DC. Only in the presence PGN, OVA-sia-2,3-loaded DC promote Th17 differentiation. Depicted results are representative of four independent experiments.



FIG. 2: No enhanced MHC class II presentation of OVA-sia-2,3 despite increased binding and uptake by DC.


The OVA-neo-glycoconjugate OVA-sia-2,3 was fluorescently labeled to assess binding and uptake by BMDC. A, To assess binding of the neo-glycoprotein, 105 BMDC were incubated with 50 μg/m1 of antigen for 30 min at 4 C. Binding was compared with native OVA. CTRL indicates cells incubated with medium only, which were used to as negative control. Binding was assesed by flow cytometry. Representative facs plots are shown. B, In addition, uptake was determined by incubating BMDC with 50 μg/ml of antigen at 37 C. Uptake of antigen was determined at indicated time points using flow cytometry and represented as MFI. One representative experiment out of three is shown. C. To examine whether increased uptake of OVA-sia-2,3 also increased presentation in MHC class II, we co-cultured 2.5×104 CD11c+ BMDC, pulsed with indicated concentrations of OVA-sia-2,3 or native OVA, with purified OVA-specific CD4+ T-cells. Proliferation was determined by addition of 3H-Thymidine during the last 16 h of a three day culture period.



FIG. 3: No induction of a tolerogenic signature in BMDC after incubation with OVA-sia-2,3.


To examine whether incubation of BMDC with OVA-sia-2,3 induced a tolerogenic phenotype in BMDC, we incubated 105 BMDC with 50 μg/ml of antigen. This was compared with the phenotype induced by incubation of BMDC with native OVA. Six hours later, RNA was isolated and expression of A. co-stimulatory markers and B. cytokines was examined using RT-PCR. One representative experiment out of three is shown. P-value <0.05 was considered significantly different from responses to native OVA.



FIG. 4: Priming of naive CD4 T-cells with Sia-OVA-loaded ex-vivo isolated splenic DC results in de novo generation of FoxP3+ T-cells with suppressive properties.


Ex-vivo isolated CD11c+ splenic DC were incubated with 50 ug/ml Sia-OVA or native OVA for 4 hours. After extensive washing, naïve OVA-specific CD62LhiCD4+ T-cells were added at a 1:10 ratio. On day 6 of culture, cells were harvested, fixed and permeabilised and stained for CD4 and FoxP3 (A) or, after 6 h stimulation with PMA/ionomycin/BrefeldinA, for IFNγ (B). The supernatants of the cultures were examined for the presence of effector cytokines (IFNγ, TNFα, IL6) as well as the anti-inflammatory cytokine IL10 (D). In addition, by adding these T-cells to co-cultures of naive CFSE-labeled OT-II T-cells and OVA-loaded DC at a 1:1 ratio, potential suppressive properties could be evaluated. The proliferation of responder T-cells was analysed 4 days later using flow cytometry (C). Results are representative of two independent experiments.



FIG. 5: Uptake of sialylated antigen results in tolerogenic DC even in the presence of a pro-inflammatory stimultus.


Ex-vivo isolated splenic DC were incubated with 50 ug/ml Sia-OVA in the presence of 100 ng/ml LPS. Four hours later, cells were extensively washed and naïve OVA-specific CD62Lhi CD4+ T-cells were added at a 1:10 ratio. On day 6 of culture, cells were harvested, fixed and permeabilised and stained for CD4 and FoxP3 (A, upper panel) or, after 6 h stimulation with PMA/ionomycin/BrefeldinA, for the effector cytokine IFNγ (A, lower panel). In addition, the culture supernatants were analysed for the presence of effector cytokines (IFNγ, TNFα, IL6) (B).



FIG. 6: De novo induction of FoxP3+ T cells upon intravenous injection of Sia-OVA.



FIG. 6A: C57BL/6 mice transferred with CFSE-labeled OT-II T-cells and one day later injected with PBS; OVA or Sia-OVA intravenously. Analysis of OT-II T cells (identified based on Tg T-cell receptor) for dilution of CFSE in spleen (left) and lymph nodes (right) FIG. 6B: C57BL/6 mice transferred with CFSE-labeled OT-II T-cells one day later injected with PBS; OVA or Sia-OVA subcutaneously Analysis of spleens (left) and lymph nodes (right). To examine whether Sia-OVA also has tolerogenic properties in-vivo we injected C57BL/6 mice that were adoptively transferred with CFSE labeled CD4+ CD25OT-II cells with 100 ug Sia-OVA i.v. (A) or s.c. (B). This was compared with injection of 100 ug OVA. Control mice received PBS. Four days later, the spleen and axillary and inguinal lymph nodes were isolated and single cell suspensions were stained for Tg TCR (Valfa2, Valfa5), CD4 and CFSE dilution of the Tg CD4 T cells was analysed. Additionally, cells were co-stained for FoxP3 (after fix and permeabilisation) and the amount of FoxP3+ CFSE+ TCR Tg T-cells was determined after i.v. injection of antigen (C). The adoptively transferred CD4+ T-cell population contained 99% CD25− T cells, indicating that no naturally occurring CD4+ CD25+ Treg was transferred (D). One representative experiment out of two is shown. P-value <0.05 was considered significantly different from responses to native OVA.



FIG. 7: Injection of Sia-OVA prevents the generation of effector cells in-vivo. To examine the strength of Sia-OVA induced tolerance in-vivo, C57BL/6 mice were injected with 100 ug Sia-OVA i.v. Control mice were injected with 100 ug native OVA. One week later, mice were sensitized by injection with 200 ug OVA/25 ug antiCD40 and 50 ug poly I:C. Another week later, mice were sacrificed, spleens were isolated and evaluated for the presence of FoxP3+ T cells, either after fixating, permeabilisation and staining for CD4 and FoxP3 (A. Left panel) or by RT-PCR after RNA isolation (A, right panel). In addition, splenocyted were restimulated for 5 h with OVA 257-264 in the presence of BrefeldinA, cells were harvested, fixed and permeabilised and stained for CD4 and IFNγ (B, left panel). In addition, the presence of IFNγ in culture supernatants was analysed by ELISA (B, right panel). Additionally, spleen cells were restimulated for 24 h with OVA 265-279; BrefeldinA was present during the last 6 hours. Cells were harvested, fixed and permeabilised and stained for CD4 and IFNγ (C), or IL10 (D, left panel). The presence of IL10 in culture supernatants was also analysed by ELISA in cultures that didnot contain BrefeldinA (D, right panel). One representative experiment out of three is shown. Responses were compared with non-treated naive mice. P-value <0.05 was considered significantly different from responses to native OVA.



FIG. 8: Low CD40 expression on DC loaded with Sia-OVA. BMDC were incubated with Sia-OVA or native OVA in the absence or presence of LPS. Control DC were incubated with medium or LPS. 24 h later, cells were stained with anti-CD40 and CD11c antibodies and expression of CD40 on CD11c+ DC was analysed using flow cytometry.





EXAMPLES
Example 1
Mice

C57BL/6 mice were purchased from Charles River Laboratories and used at 8-12 weeks of age. OT-1 and OT-11 TCR transgenic mice were bred and kept in our animal facility under specific pathogen-free conditions. All experiments were approved by the Animal Experiments Committee of the VUmc.


Example 2
Bone Marrow-Derived DC

BMDC were cultured as previously described by Lutz et. al. J.I. Methods 223, 77-92,1999) with minor modifications. Femur and tibia of mice were removed, both ends were cut and the marrow was flushed with Iscove's Modified Dulbecco's Medium (IMDM; Gibco, CA, USA). The resulting marrow suspension was passed over 100 μm gauze to obtain a single cell suspension. After washing, 2×106 cells were seeded per 100 mm dish (Greiner Bio-One, Alphen aan de Rijn, The Netherlands) in 10 ml IMDM, supplemented with 10% FCS; 2 mM L-glutamine, 50 U/ml penicillin, 50 ug/ml streptomycin (BioWhittaker, Walkersville, Md.) and 50 μM β-mercaptoethanol (Merck, Damstadt, Germany) (=IMDMc) and containing 30 ng/ml recombinant murine GM-CSF (rmGM-CSF). At day 2, 10 ml medium containing 30 ng/ml rmGM-CSF was added. At day 5 another 30 ng/ml rmGM-CSF was added to each plate. From day 6 onwards, the non-adherent DC were harvested and used for subsequent experiments.


Example 3
Antibodies

Unconjugated mouse anti-chicken egg albumin (OVA) antibody (OVA-14) was purchased from Sigma Aldrich. FITC-labeled antibodies used were anti-CD11c (clone N418) and anti-CD4 (clone GK1.5).


PE-labeled antibodies were anti-IL-4 (clone 11B11), anti-IL-17 (clone eBioTC11-18H10.1), anti-CD40 (clone MR1), anti-CD80 (clone 16-10-A1), anti-CD86 (clone GL-1), anti-MHC class-II (clone ?,-. APC-labeled antibodies used were anti-CD11c (clone N418), anti-IFNγ (clone XMG1.2) and anti-FoxP3 (clone FJK-16s). All antibodies were purchased from e-Bioscience (Belgium) or BD Biosciences (Belgium)).


Secondary antibodies used in this study were peroxidase-labeled goat anti-human IgG and goat anti-mouse IgG (Jackson, West grove, Pa., USA).


Example 4
Generation of sia-2,3-OVA

3′-Sialyllactose (Neu5Acα2-3Galβ1-4Glc; Dextra labs, UK) was conjugated to Ovalbumin (Calbiochem, Darmstadt, Germany) creating OVA-sia-2,3 using a bifunctional cross linker (4-N-Maleimidophenyl butyric acid hydrazide; MPBH; Pierce, Rockford, USA). In short, via reductive amination, the hydrazide moiety of the linker is covalently linked to the reducing end of the carbohydrate. Hereto, the mixtures were incubated for 2 h at 70°°C. After cooling down to RT, 1 ml ice-cold isopropanol (HPLC grade; Riedel de Haan, Seelze, Germany) was added and the mixture was further incubated at −20° C. for 1 h. Subsequently, the precipitated derivatised carbohydrates were pelleted and dissolved in 1 mM HCl. Ovalbumin was added to derivatised carbohydrates at a 1:10 molar ratio (OVA:carbohydrate) and conjugation was performed o/n at 4° C. The neo-glycoconjugate was separated from reaction-reductants using a PD-10 desalting column (Pierce, Rockford, USA). The concentration of OVA was determined using the bicinchoninic acid assay (Pierce, Rockford, Ill.). Potential endotoxin contamination was determined using a chromogenic LAL endotoxin assay kit (fabrikant). Both OVA-sia2,3 and native OVA were devoid of any endotoxin (Supplemental FIG. 1A).


Additionally, a Dylight 549-N-hydroxysuccimide (NHS) label (Thermo Scientific, Rockford, USA) was covalently coupled to OVA or OVA-sia-2,3 (Dylight-549-OVA). Free label was removed using a PD-10 column (Pierce).


Presence of sia-2,3 on OVA was measured by ELISA. In brief, OVA-sia-2,3 was coated directly onto ELISA plates (NUNC Maxisorb, Roskilde, Denmark) and binding of the plant lectin Maackia amurensis (MAA, Vector Laboratories Inc) was determined as described {Singh, 2010 90/id}, data are shown in Supplemental FIG. 1B.


Example 5
Binding/Uptake Assays

5×104 BMDC were plated in 96 well round-bottom plates and Dylight 549-labeled antigen (30 μg/ml) was added. Cells were incubated with antigen for 30 min at 4° C. to determine binding, or 1, 2 and 4 h at 37° C. to determine binding/uptake.


MHC Class I and Class II-Restricted Antigen-Presentation Assay

BMDC (2.5×104/well) were incubated with indicated concentrations of antigen in 96-well round bottom plates for four hours. After washing, either 5×104 purified OVA-specific CD4+ or CD8+ T-cells were added to each well. OVA-specific CD4+ and CD8+ T-cells were isolated from lymphoid tissue of OT-I or OT-II mice, respectively. In brief, lymph nodes and spleen were collected and single cell suspensions were obtained by straining the spleens and lymph nodes through a 100 μm gauze. Erythrocytes were depleted by incubation in ACK-lysis buffer and CD4+ or CD8+ T-cells were isolated from the single cell suspensions using the Dynal mouse CD4 or CD8 negative isolation kit (Invitrogen, CA, USA) according to the manufacturer's protocol. Proliferation was assessed by [3H]-thymidine incorporation. [3H]-thymidine (1 μC/well; Amersham Biosciences, NJ, USA) was added for the last 16 h of a 3 day culture. Cells were harvested onto filters and [3H]-thymidine incorporation was assessed using a Wallac microbeta counter (Perkin-Elmer, USA).


Example 6
In-vitro CD4+Thelper Differentiation Assay

104 BMDC were incubated with 30 μg/ml neo-glycoconjugate or native OVA for 4 h in 96-wells round bottom plates. After washing, 5×104 purified naive CD4+CD62LhiCD25− T-cells isolated from OT-II mice were added to each well. On day 2, 10 IU rmlL-2 was added. On day 7, expression of FoxP3 was analysed using the FoxP3 staining kit (e-Bioscience). Addionally, the frequency of IFNg+, IL4+ or IL17A+ T-cells was determined by intracellular staining. Hereto, T-cells were activated with PMA and ionomycin (100 ng/ml and 1 μg/ml; Sigma) for 6h in the presence of Brefeldin A (Sigma). Cells were co-stained for CD4 and analyzed using a FACScalibur.


Example 7
cDNA Synthesis and Real Time PCR

mRNA was isolated by capturing poly(A+)RNA in streptavidin-coated tubes using a mRNA Capture kit (Roche, Basel, Switzerland). cDNA was synthesized using the Reverse Transcription System kit (Promega, WI, USA) following manufacturers guidelines. Real time PCR reactions were performed using the SYBR Green method in an ABI 7900HT sequence detection system (Applied Biosystems).


Example 8
In-vitro Analysis of Treq Induction

Loading of ex-vivo isolated splenic DC with Sia-OVA in-vitro results in generation of tolerogenic DC that induce naïve CD4+ Thelper differentiation towards Treg lineage


104 BMDC were incubated with 30 μg/ml Sia-OVA or native OVA for 4 h in 96-wells round bottom plates. After washing, 5×104 purified naive CD4+CD62LhiCD25 T-cells isolated from secondary lymphoid tissue of OT-Il Tg mice were added to each well. On day 2, 10 IU rmlL-2 was added. On day 7, expression of FoxP3 was analyzed using a FoxP3 staining kit (e-Bioscience). Additionally, the frequency of IFNγ+, IL4+ and IL17A+ T-cells was determined by intracellular staining. Hereto, T-cells were activated with PMA and ionomycin (100 ng/ml and 1 μg/ml; Sigma) for 6 h in the presence of Brefeldin A (Sigma). Cells were co-stained for CD4 and analyzed using a FACScalibur.


We observed that also incubation of naïve OVA-specific CD4+ T-cells with ex-vivo isolated and Sia-OVA loaded splenic DC results in generation of increased numbers of FoxP3+ CD4+ T-cells compared to native OVA-loaded DC (FIG. 4A). Hardly any IFNγ-producing T-cells were detected (FIG. 4B). Neither IL4- nor IL17-producing T-cells were detected in T-cells primed by SIA-OVA or native OVA-loaded DC (not shown).


The induced FoxP3+ T cells were tested for their suppressive capacities. Hereto, they were added to co-cultures of naïve CD4+ OT-II responder T-cells and OVA-loaded DC. By labeling the responder T cells with CFSE, their proliferation can be analyzed via flow cytometry. Only T-cells primed by Sia-OVA-loaded DC suppressed the proliferation of responder T cells (FIG. 4C). T-cells primed by OVA-loaded DC or naive T cells did not affect the proliferation of the responder T cells.


To assess the strength of DC modulation by SIA-OVA uptake (and thus the applicability of administration of sialylated antigens in patients with ongoing immune responses), we loaded ex-vivo isolated splenic DC with Sia-OVA in the presence of LPS (100 ng/ml). Even in this setting, FoxP3+ T-cell generation was detected. Moreover, whereas OVA-LPS loaded DC induced IFNγ production in OVA-reactive T cells, this was not observed in cultures with Sia-OVA-LPS loaded DC (FIG. 5A). Analysis of culture supernatants showed reduced TNFα, IFNγ and IL6 concentrations than culture supernatants from T cells and DC-OVA-LPS (FIG. 5B).


Example 9
In vivo Experiments

The potency of sialylated antigens to induce tolerance in-vivo was analyzed in different models.


C57BL/6 mice were adoptively transferred with CFSE-labeled CD4+ OT-II T-cells. One day later, mice were injected with 100 μg OVA-SIA or native OVA i.v.


or s.c. and three days later, lymphoid tissues were analyzed for the proliferation of the transferred OVA-specific CD4 T-cells. Control mice received PBS, which did not lead to proliferation of the transferred CD4 T-cells (FIG. 6A). We observed that injection of OVA induced massive proliferation (FIG. 6A), irrespective of site used for injection (i.v. or s.c.). However, i.v. injection of Sia-OVA resulted in reduced proliferation of the transferred OT-II T cells. The reduction in proliferation was observed systemically (spleen and lymph nodes). Injection of Sia-OVA s.c. did not show prominent effects on OT-II T cell proliferation in the draining lymph nodes compared to OVA (FIG. 6B). When analyzing the phenotype of the transferred OT-II T cells we observed that only in the Sia-OVA injected mice, the T cells were positive for FoxP3 (FIG. 6C). Since the injected OT-II T-cells were CD25CD4+ T cells, thus devoid of CD25+CD4+ naturally occurring Treg, these data show that injection of Sia-OVA results in de novo induction of FoxP3+ Treg (FIG. 6D).


Furthermore, these data suggest that the receptor for Sia is mostly present on antigen presenting cells, in particular on DC in the spleen.


Since i.v. injection of Sia-OVA had such prominent effects on FoxP3+ T cell generation in-vivo, we assessed whether these cells could prevent the generation of effector T cells. Hereto, C57BL/6 mice were treated with Sia-OVA before immunization. This group was compared with mice treated with OVA. Mice were immunized one week later by i.v. injection of 100 μg OVA mixed with 25 μg aCD40 and poly I:C. One week after immunization, spleens were collected and the frequency of FoxP3+ CD4+ T cells was analyzed by flow cytometry. Compared to naïve control mice, there was a significant increase in the percentage of FoxP3+ T-cells detected in the spleens of Sia-OVA but not native OVA treated mice. This was also significantly higher than the percentage detected in spleens of native OVA treated mice (FIG. 7A left panel), which was confirmed by RT-PCR on total splenocytes (FIG. 7A right panel).


In addition, the presence of CD8 and CD4 effector T cells was determined upon in-vitro re-stimulation with OVA peptides (OVA257-264 and OVA265-279, respectively) and intracellular cytokine staining. The percentage of IFNγ-producing CD8 T-cells was significantly reduced in Sia-OVA treated mice compared to OVA treated mice (FIG. 7B, left). This was confirmed when measuring IFNγ levels in the supernatant of parallel cultures (FIG. 7B, right). Analysis of IFNg production by CD4 T cells did not show significant differences (FIG. 7C). This may be due to the fact that induced Treg have been shown to produce IFNγ as well (e.g. Tr1 cells). Hereto, simultaneous analysis for IL10 should be performed in future to discriminate these IL10 and IFNγ-producing Treg from IFNγ-producing effector T cells.


Analysis of IL10-producing CD4 T-cells showed that there was a significantly increased percentage of IL10-secreting T cells in the spleens of SIA-OVA treated mice. However, this was not significantly different from the percentage that was found in spleens of native OVA treated mice (FIG. 7D, left). These data were confirmed when analyzing the supernatants of splenocytes after o/n culture (FIG. 7D, right).


Furthermore, our experiments clearly showed that when we injected DC in vitro loaded with SIA-OVA into C57BL/6 mice, followed by a challenge with OVA+CpG, we observed a strong induction of FoxP3+Treg and a decrease of effector CD4 T-cell induction. This clearly shows that induction of tolerance in vivo is mediated by DC.


Example 10
Modulation of DC

We have analysed the phenotype of DC after taking up Sia-OVA and compared it with the phenotype of DC that ingested native OVA. This was done in both the absence and presence of LPS. It was shown that CD40 is consistently lower on Sia-OVA loaded DC when compared to OVA loaded DC.


To get more insight in the underlying mechanism of tolerance induction by Sia-OVA loaded DC, we performed a micro-array analysis. Hereto, DC were incubated with 50 μg/ml Sia-OVA or native OVA and 1 and 6 h later, DC were harvested and RNA was extracted using the nucleospin kit. Genomic DNA was removed using DNAse treatment. RNA quality and integrity was checked by Service XS (Leiden). Based on good quality, RNA was amplified, labeled and hybridized on BeadChip Arrays (MouseWG-6 v2, Illumina). We have compared the normalized gene expression of Sia-OVA DC with OVA-DC and all samples that show more than 10-fold differences (higher or lower) are in Table 2. Most interesting genes seem AIRE (higher in Sia-OVA DC) and the switching on of a type I IFN pathway. Both have been related to tolerance and also seem to be connected with each other.














TABLE 2








OVA-






OVA-
sa2,3
OVA-
OVA-




sa2,3 vs
vs
sa2,6 vs
sa2,6 vs




OVA 1 h
OVA 6 h
OVA 1 h
OVA 6 h




















ILMN_2659408
Rel
1,028345
1,103712
0,103688
11,1404


ILMN_1249750
Reln
0,101298
0,101936
0,999407
102,914


ILMN_2674533
Renbp
99,51158
0,986405
97,55804
0,978967


ILMN_2641270
AA536717
0,098526
10,40813
0,995059
98,62595


ILMN_2605630
AA881470
101,2935
0,977818
98,89889
0,96501


ILMN_2719139
AB124611
98,90014
0,098043
100,2287
0,930972


ILMN_1218537
Abca15
102,7413
1,008956
100,6122
9,991803


ILMN_2663015
Abcb8
1,024122
0,100682
0,099732
100,361


ILMN_2685157
Abcc3
999,247
0,930306
1001,941
0,938589


ILMN_1253491
Abcc9
1,006649
0,959709
1,002382
102,7102


ILMN_2687062
Abr
99,01085
0,997722
98,67048
0,9895


ILMN_2739219
Acad10
1020,163
0,964181
1012,151
0,984681


ILMN_1220016
Acbd5
0,984563
0,991942
0,099628
98,83858


ILMN_2770667
Acin1
0,979681
0,097175
0,946506
99,56963


ILMN_1216022
Aclp7
1,00318
10,64468
10,17214
104,08


ILMN_2745889
Acot2
0,980553
9,743136
0,977466
95,41733


ILMN_1213138
Acy1
97,356
0,952368
99,73741
0,965828


ILMN_3139103
Adam15
0,099838
8,929052
1,004738
87,97479


ILMN_1240629
Adam15
104,2488
0,967151
102,0592
0,094326


ILMN_3134632
Adam22
102,1393
10,06842
100,5282
1,016651


ILMN_3033533
Add1
1,00665
9,572825
1,012456
93,49712


ILMN_2738082
Adipoq
0,993226
0,096595
0,995041
99,89807


ILMN_1215394
Adpgk
10,10091
99,35876
9,956478
0,991647


ILMN_1215901
Agpat2
10,13781
1,05875
97,95148
1,041015


ILMN_2972521
Agtr1a
0,09689
1,010311
0,974424
102,1489


ILMN_2590950
Agtrap
9,612647
103,6355
0,009756
0,102844


ILMN_2916008
Agxt2l2
0,972468
99,42319
0,950237
0,993325


ILMN_1258578
Ahnak
1,038872
9,531327
0,105231
95,0189


ILMN_2684007
Al844366
0,997183
1,013509
1,013799
99,31121


ILMN_1216550
Al851790
0,993945
0,998739
0,989183
100,3487


ILMN_2673099
A1987944
0,98241
1,018939
0,996969
101,1484


ILMN_1213787
Aire
1,026076
0,998319
1,012772
100,1469


ILMN_1235909
Ak2
9,870461
0,109321
97,77247
1,08545


ILMN_1246068
Akap12
100,2487
0,102842
101,4649
1,049984


ILMN_3116504
Akap2
0,100643
1,09025
0,09927
105,2205


ILMN_2627299
Akap9
1,040274
95,7044
0,987936
9,503727


ILMN_2661287
Akp2
0,991037
0,102454
0,97956
98,13207


ILMN_2481458
Akr1b3
99,68519
0,975054
99,46308
1034,701


ILMN_1214358
Akt1s1
1,017785
103,7958
10,22891
1,061528


ILMN_3100276
Aldh1l1
10,07558
0,980369
100,8811
0,984862


ILMN_1224012
Aldob
9,665992
0,985546
97,35459
0,100766


ILMN_2660414
Alg5
99,73186
1,018703
101,2032
0,098715


ILMN_2892292
Alg9
1,011797
1,011511
1,016208
102,1624


ILMN_1235966
Alox12b
99,32697
1,023599
100,3686
101,8012


ILMN_2681123
Als2cr2
976,0651
0,960205
1005,91
0,091872


ILMN_2718293
Amelx
99,37019
9,926122
101,5065
0,975022


ILMN_2859778
Anapc4
0,971498
0,977219
1,006495
100,3286


ILMN_2568390
Angptl3
0,977892
0,097669
0,999894
974,3339


ILMN_1253761
Ankrd39
9,849003
96,10191
10,3044
0,95381


ILMN_2592358
Ankrd49
0,970275
0,977431
0,918654
101,763


ILMN_1217993
Ankrd6
1,012684
99,42222
0,974492
0,992855


ILMN_2665496
Ankrd9
102,6115
1,01209
100,6919
1,022893


ILMN_2735877
Anks3
103,0724
0,910252
103,0553
8,992366


ILMN_2685507
Anp32a
0,098381
0,953522
1,016315
94,34225


ILMN_1230010
Anxa10
9,946819
101,7208
9,982971
1,031209


ILMN_1219115
Apc
0,987325
98,93451
0,961718
0,992878


ILMN_2449193
Apg4d
97,58354
0,099454
97,66596
0,986757


ILMN_1232821
Aph1a
102,3822
0,995923
10,24009
100,4748


ILMN_2916782
Apom
0,988538
0,893169
0,97074
86,82716


ILMN_2724868
Appbp2
96,78724
1,000733
92,39066
10,28014


ILMN_1225901
Aqp11
0,998861
0,995061
1,005773
96,73764


ILMN_2943165
Aqp7
0,097988
0,996017
0,990391
995,3483


ILMN_1237241
Araf
10,37345
96,13192
10,44231
0,096285


ILMN_2649846
Arcn1
103,324
0,963489
10,08846
0,098458


ILMN_2743425
Arfip1
10,03356
0,961122
100,2037
0,935154


ILMN_2613531
Arhgap21
1,003831
0,981488
0,980804
96,2602


ILMN_2589999
Arl10c
0,985403
89,7199
0,975282
8,821913


ILMN_3066763
Arl4a
104,433
1,050157
103,2892
1,022906


ILMN_1247625
Arp3b-pending
1,006938
0,971162
1,001264
964,7989


ILMN_2666279
Arrdc3
1,077088
0,086627
1,058399
897,2452


ILMN_2679609
Art1
0,101671
9,850694
1,014597
101,1813


ILMN_2629591
Asah1
105,1951
0,118185
10,55519
1,141375


ILMN_2663555
Asb3
101,6378
1,13001
9,793706
1,121915


ILMN_3075168
Ash2l
0,969681
0,098741
1,00595
100,8362


ILMN_3006123
Asns
96,1865
1,016376
98,12903
0,968906


ILMN_2776700
Asph
10,012
101,4094
10,22624
0,999028


ILMN_2594584
Asph
100,5377
9,837391
98,59214
0,101903


ILMN_2629103
Atcay
10,20191
0,977784
9,779767
99,57801


ILMN_2620574
Atg16l1
982,569
9,468761
101,9885
0,967669


ILMN_2606567
Atic
97,46479
0,963219
99,36086
1,006792


ILMN_1258206
Atm
99,02622
0,977615
9,747839
1,012082


ILMN_3038944
Atp2b2
1,032362
1011,428
0,980498
0,999334


ILMN_2973897
Atp5l
95,48242
1,000159
97,48098
0,994841


ILMN_2680440
Atp6v1b2
99,90241
0,953126
100,8208
0,9605


ILMN_2755322
Atp6v1e2
101,832
0,994822
99,59874
1,0165


ILMN_1255220
Atp9a
0,100331
10,10136
1,008405
101,7454


ILMN_1229377
AU017455
0,955379
992,8015
0,94251
0,998757


ILMN_2919343
Aven
97,77753
1,005044
99,18759
10,18624


ILMN_2755585
Avpi1
1,012887
1,08022
1,030473
110,9546


ILMN_1251934
Azi2
101,4731
9,879583
99,25178
9,993418


ILMN_1247168
B130032G09Rik
9,890892
10,15862
100,8566
1,005667


ILMN_1257672
B230205M18
1,005101
0,999803
1,014716
97,46832


ILMN_2565428
B230325K09Rik
9,968016
0,983847
9,758051
995,26


ILMN_1235144
B230399H06Rik
101,9651
0,102365
100,7778
1,012485


ILMN_2669708
B3gat2
1011,864
0,98462
1008,746
1,014485


ILMN_3149776
B3gnt8
10,06867
90,3311
103,1875
0,91006


ILMN_1216802
Bad
0,102461
0,957779
0,009748
94,21028


ILMN_2665609
Baiap2l1
988,7948
1,024328
976,3332
0,999748


ILMN_2749866
Bap1
9,676667
0,959977
0,973136
95,05828


ILMN_2652385
Baz2a
1,000717
9,973698
0,964416
98,74386


ILMN_2684272
Bbs9
102,191
1,011412
101,3924
9,963482


ILMN_3006534
BC003885
99,0739
1,03535
101,7832
1,02412


ILMN_3133238
BC013491
99,14106
0,990603
97,97291
1,035456


ILMN_2688176
BC046418
0,983674
0,985768
1,005455
96,46881


ILMN_2960128
BC048502
0,099621
0,979413
0,992124
100,9488


ILMN_2664291
BC055111
99,83961
0,099096
98,75682
0,984474


ILMN_2993962
BC099439
0,981124
1033,503
0,098784
1,026491


ILMN_2677422
Bcl2l14
100,8667
0,98433
102,2935
0,959676


ILMN_2713638
Bcmo1
0,997612
0,993911
0,992652
98,05958


ILMN_2639819
Bet1l
9,780487
0,998096
97,10562
0,100206


ILMN_2681241
Birc5
0,102187
101,0209
0,099758
0,98774


ILMN_2910258
Bnc1
1,050197
0,978384
1,004996
103,3005


ILMN_2846368
Bola2
98,00094
0,937006
97,37207
0,930611


ILMN_1253942
Bop1
93,89475
10,0153
94,85711
1,036676


ILMN_1243635
Brunol4
97,2682
1,007737
98,66806
1,014305


ILMN_1224958
C030015H18
98,21568
0,09935
100,2623
0,989865


ILMN_1259185
C030048B08Rik
101,1684
0,995838
102,8585
10,23537


ILMN_1233652
C130015E15Rik
103,0576
1,014571
99,38498
0,985424


ILMN_2753279
C130023O10Rik
96,23538
10,02187
98,53216
1,002206


ILMN_2754119
C130039O16Rik
0,976549
1,000482
0,997887
986,9044


ILMN_1223290
C130046N05Rik
1,038869
0,100686
1,016037
10044,12


ILMN_1228917
C330023M02Rik
0,956375
1,032472
0,945739
1018,341


ILMN_2702286
Cacnb3
1,020904
1,150696
1,025121
114,2253


ILMN_1241128
Calcoco1
996,5213
0,089271
100,732
0,874231


ILMN_1257323
Car6
1,012838
0,978974
0,989067
1002,46


ILMN_2866175
Card14
9,803762
10,16014
9,931693
102,0377


ILMN_1220811
Caskin1
1,014175
0,996775
1,009265
98,46722


ILMN_2865939
Ccdc100
9,960177
9,40414
10,06811
92,64171


ILMN_2745151
Ccdc123
0,098653
0,972197
0,961661
96,12732


ILMN_2756733
Ccdc130
100,0595
0,959578
99,43568
0,951075


ILMN_2671436
Ccdc77
101,2349
0,964637
96,68356
0,988785


ILMN_2752408
Ccdc90b
1,007825
0,10722
0,991932
103,8052


ILMN_2862179
Ccl11
98,9178
0,982289
97,0845
0,983082


ILMN_2771176
Ccl7
83,83454
0,122139
89,36513
1,25809


ILMN_2863768
Ccnb3
0,992992
0,999488
0,988422
97,21907


ILMN_2669793
Ccnd1
0,998637
0,101775
0,966321
102,7623


ILMN_3131063
Ccnd3
0,963618
8,522801
0,098333
85,32755


ILMN_2696291
Cd209d
100,111
0,100882
101,6694
0,990543


ILMN_2665757
Cd209e
0,977415
0,100134
0,982201
9,986747


ILMN_3117602
Cd6
1022,289
9,172848
1033,979
0,091576


ILMN_2586179
Cd69
0,969605
1,010149
9,560333
103,03


ILMN_2731282
Cd8a
10,24021
1,014975
10,22786
1016,535


ILMN_1244296
Cdc14b
0,101063
1,001597
1,007298
98,53194


ILMN_2612206
Cdc20
1006,605
0,93934
974,0858
9,245129


ILMN_1250900
Cdk7
101,045
0,982047
985,5148
0,956287


ILMN_2732437
Chrna6
1,018822
1,05132
1,008538
995,2643


ILMN_1235663
Cnot8
101,847
1,01818
102,0317
9,862585


ILMN_2589422
Col6a1
0,97806
0,984973
1,011739
97,71503


ILMN_2671689
Cox7b
100,9042
1,056407
100,3663
1,022861


ILMN_1236346
Cpeb2
1,0092
1,006872
1,004107
101,0207


ILMN_2877900
Cpne5
0,99407
1,018435
1,014962
102,8263


ILMN_2913078
Cps1
9,861924
0,100572
9,963818
101,7166


ILMN_1213549
Creb3l4
0,95467
9995,844
9,819902
0,983614


ILMN_1216758
Crem
101,0591
0,992101
100,802
0,970744


ILMN_1233069
Crh
97,64674
0,999484
1010,487
0,986246


ILMN_2907964
Crim2
0,989478
0,929252
0,99025
93,03724


ILMN_2987844
Crk
101,1075
1,011071
101,1205
0,993613


ILMN_2668253
Crkrs
0,965559
1,010495
0,099876
99,35456


ILMN_2728094
Cryba1
100,1304
0,986998
100,073
1,024256


ILMN_2613659
Ctdp1
94,92608
9,832516
97,15404
0,958597


ILMN_2858769
Ctps2
1,009855
0,980505
0,99267
98,51342


ILMN_1253235
Cugbp2
98,95966
0,932621
97,68206
0,992364


ILMN_2760019
Cxcl13
98,46601
1,022856
98,65985
1,014522


ILMN_2659426
Cxcl14
1,001054
0,953478
0,997075
982,147


ILMN_3078306
Cyb561d1
100,5749
0,952014
101,5275
0,945079


ILMN_1241818
Cyp2c54
10,05082
0,994231
100,6704
1,033107


ILMN_2525402
D10Bwg1379e
9968,751
0,098971
9781,422
0,995327


ILMN_2691157
Dctn1
0,986458
0,104052
0,095007
108,3556


ILMN_2446727
Ddhd1
105,4707
0,900495
103,8381
0,09623


ILMN_1259277
Ddx28
0,097655
9,727763
0,962635
953,9783


ILMN_2692412
Defb2
96,91346
1,010442
97,91363
0,996252


ILMN_1229247
Defb41
0,978942
1,001083
1,014259
100,6946


ILMN_2658961
Dgka
0,100532
1,006368
0,1036
996,6944


ILMN_3101919
Dgkh
0,995508
1,000368
1,027322
96,16117


ILMN_2462151
Dgkq
99,91771
1,008908
100,2425
0,984353


ILMN_2915059
Dgkz
94,59734
8,56831
9,67789
8,70217


ILMN_1222841
Dgl1-pending
97,55169
0,989549
99,01643
1,003833


ILMN_1233008
Dhx30
98,64991
0,967717
100,4042
0,009669


ILMN_2611098
Dip2b
100,9192
9,737461
100,2285
0,98252


ILMN_2746556
Dkk3
99,38057
0,965588
100,6638
10,00113


ILMN_2627081
Dkkl1
102,0234
0,981478
100,266
1,000026


ILMN_2914010
Dmwd
98,03993
9,084114
100,2711
0,89593


ILMN_2725428
Dnajb10
103,5862
1,077698
103,9828
1,09103


ILMN_2751925
Dpp3
95,03934
0,957978
95,86784
0,936473


ILMN_2677494
Drg2
1,001753
1,032778
0,998074
99,72893


ILMN_2775813
Dusp12
99,66745
1,009156
95,62582
0,978808


ILMN_3053158
Dyrk1b
103,1909
0,937689
106,0038
0,927979


ILMN_2572643
E330034F13Rik
0,100319
10,24731
1,010142
1041,036


ILMN_2702508
Ebna1bp2
9,687253
0,099876
97,12832
10,03834


ILMN_2861879
Edar
1,011165
1,00212
0,099657
95,22979


ILMN_2643355
Edaradd
1,00308
1,01157
0,098737
100,847


ILMN_2765015
Eed
100,1992
0,999645
99,85057
1,023327


ILMN_3061673
Eef1d
997,3336
1,015619
968,0081
0,988045


ILMN_2846821
EG328280
97,56242
9,888982
97,48851
1,009572


ILMN_2493668
EG330031
99,10159
10,03361
102,1472
1,017641


ILMN_1242669
Egflam
99,08995
0,988674
98,23838
0,09474


ILMN_2653543
Egr3
98,40926
0,995354
100,3774
0,970772


ILMN_2789601
Eif3i
0,993122
0,977201
0,099271
99,0758


ILMN_1243394
Eif4b
99,77838
0,978956
102,0176
0,968495


ILMN_1254206
Eif4e1b
99,26624
1,009229
98,58994
1,023777


ILMN_2697304
Eln
0,998608
0,09873
0,100388
98,20773


ILMN_2614752
Elovl6
97,7495
0,939998
103,1668
0,092278


ILMN_2757062
ENSMUSG00000033219
103,4994
9,774745
101,3423
1,041206


ILMN_1258722
ENSMUSG00000042857
101,8688
9,759741
100,9402
1,000307


ILMN_3129160
Epas1
99,12285
0,098759
99,41097
0,097499


ILMN_2686924
Epha1
98,41166
0,99898
98,07619
10,22057


ILMN_2679830
Epsti1
9,980848
1,009307
9,849766
98,49


ILMN_1250597
Erbb3
101,7993
1,007096
100,7874
1,036176


ILMN_2772035
Erc1
0,947979
1,00777
0,973254
100,2977


ILMN_2992541
Ergic3
10,17137
0,097703
10,27961
95,0453


ILMN_1213296
Evi5l
0,098612
1,008619
0,998532
98,02823


ILMN_1229242
F830016N17Rik
992,1156
0,099309
985,5693
0,099541


ILMN_2826304
Fabp6
103,1885
1,00344
102,212
1,034919


ILMN_3066293
Fancc
1006,906
0,990837
97,96588
1,010898


ILMN_2847136
Fastk
99,51694
0,982594
100,8734
97,22678


ILMN_1226274
Fat4
99,91808
9,778576
102,6167
0,991788


ILMN_3038394
Fbxl10
1,000968
10,34846
1,003316
101,5194


ILMN_2633301
Fbxl7
0,996523
9,886947
1,002087
101,1812


ILMN_2451855
Fbxo45
0,097758
9,846192
0,977467
97,43176


ILMN_2582084
Fermt2
100,7731
0,997861
103,4975
1,018472


ILMN_1229698
Fgd4
0,968829
1,003967
0,994546
98,88624


ILMN_2707356
Fgf13
98,5557
0,979335
101,3539
0,989269


ILMN_2832105
Fgg
976,712
1,022724
1000,745
0,982923


ILMN_2748680
Fhit
1,027531
1,002197
0,992864
9753,363


ILMN_2674132
Fibp
1,005565
1,001045
1,017715
99,94015


ILMN_1260135
Flnc
0,970813
0,985748
0,101869
98,35351


ILMN_2702464
Flot1
100,5289
1,008288
98,87429
0,098905


ILMN_2926842
Flrt2
100,8743
0,99468
98,35319
0,95436


ILMN_1248190
Flvcr2
101,0148
0,866904
100,9189
0,886543


ILMN_1240846
Fndc1
100,1766
1,004825
104,85
0,099585


ILMN_2670517
Fntb
1,004059
0,961594
0,983029
97,38121


ILMN_1252110
Foxj2
1,037745
0,09719
1,031479
93,83965


ILMN_1224018
Foxk1
0,955487
0,985807
0,995219
98,28413


ILMN_2656498
Foxo1
1,037234
1,00469
1,014846
100,0742


ILMN_1251126
Foxp3
9,77979
9,4417
9,726849
91,25276


ILMN_2659663
Foxp2
9,659801
1,0488
9,851438
1,012678


ILMN_2429551
Frmd4a
0,102648
0,925808
1,019704
96,04416


ILMN_2958016
Fundc1
1,073253
1,094891
1,055057
109,6586


ILMN_2674979
Fus
9,371913
1,012155
96,29235
1,005847


ILMN_2939666
Fzd2
992,6725
9,804943
1041,343
0,992843


ILMN_2774825
G3bp1
97,62113
1,012218
99,58618
1,000295


ILMN_2646380
Gabpb1
0,099944
1,112443
1,01149
1118,014


ILMN_3106849
Gal3st3
1,042885
100,5308
1,040509
99,52122


ILMN_2881155
Gal3st4
10,02421
0,998784
9,969722
99,38768


ILMN_2860649
Gbp6
100,0182
0,99548
95,27171
0,974757


ILMN_2875336
Gcat
100,5076
0,958457
101,5154
9,983476


ILMN_1228316
Gdi1
0,102815
1,027637
1,006134
102,9727


ILMN_1214319
Gemin6
1,011646
0,992227
1,009633
97,57332


ILMN_1236845
Gfod2
0,09598
0,097142
0,98029
97,09654


ILMN_2631363
Gif
0,983927
0,97706
0,965454
97,4734


ILMN_2721734
Gjd2
0,102873
1,01547
0,101304
966,5576


ILMN_2685506
Gje1
1,009132
0,990791
0,974513
1011,543


ILMN_2838605
Glis3
990,414
0,009946
990,063
0,996183


ILMN_2729364
Glra2
1,000599
0,994161
99,3303
9,891735


ILMN_1217767
Glrx5
0,094499
9,159094
0,955313
91,33761


ILMN_1248467
Gm1027
99,22358
0,100963
100,0698
0,102133


ILMN_2539428
Gm1070
0,959547
99,624
0,994394
1,012881


ILMN_3029489
Gm129
0,982231
1,020812
1,007998
96,58471


ILMN_1232057
Gm26
0,100459
0,099178
1,03716
101,3112


ILMN_1240736
Gm318
1,014537
0,986561
1,024794
9945,749


ILMN_2598594
Gm443
10,13529
0,994511
99,82462
0,980946


ILMN_2803319
Gm606
101,3642
0,099711
100,6399
1,037138


ILMN_3022025
Gm732
0,958279
9,656418
0,958082
98,94724


ILMN_1229324
Gm757
1,001783
1,018478
1,008558
102,8928


ILMN_2908855
Gnai2
9,832485
0,094289
9,895567
95,49658


ILMN_2733433
Gnai3
1020,027
0,103899
1028,753
0,987284


ILMN_2661635
Gyg
104,6152
1,006181
106,0327
1,023016


ILMN_2742160
H13
96,85991
0,967374
100,4352
0,944166


ILMN_2685581
H2-Q5
1,010285
1,046776
10,058
106,6858


ILMN_1230323
Hbp1
9750,761
0,975145
9891,527
0,992563


ILMN_2637982
Herc1
0,991905
1,005105
0,009839
104,9426


ILMN_2723631
Hint1
99,59557
0,991124
98,94354
0,954837


ILMN_1252995
Hist1h2be
9,861481
9,457645
9,881257
93,87584


ILMN_2677408
Hrmt1l2
0,967371
0,098508
0,975685
1013,349


ILMN_2658501
Ifitm3
1,029882
0,104393
1,038346
104,5469


ILMN_2658633
Ifna7
1,001601
10,32717
1,025378
100,0743


ILMN_1260493
Ift140
102,3462
0,999771
102,3426
0,096394


ILMN_2671767
Ift20
1,003421
1,043429
1,001482
102,5302


ILMN_2788283
Ift52
1,015203
9,422482
0,993875
92,56936


ILMN_2590585
II1rapl2
9,950188
0,099529
9,807601
99,61221


ILMN_3155812
II20rb
0,099269
0,985523
0,999115
98,3642


ILMN_1243066
II1a
0,10371
0,164311
1,108696
0,016672


ILMN_3155812
II20rb
0,099269
0,985523
0,999115
98,3642


ILMN_2590585
II1rapl2
9,950188
0,099529
9,807601
99,61221


ILMN_2695883
Irf6
98,07738
1,018216
99,05107
0,098528


ILMN_2623699
Irf4
10,11834
1,043845
10,07184
10,42105


ILMN_2727022
Itgb1bp3
0,099752
1,0138
10,24586
0,009991


ILMN_2658633
Ifna7
1,001601
10,32717
1,025378
100,0743


ILMN_2711910
Ifnb1
97,5166
1,045995
98,0811
1,078197


ILMN_3046362
Traf5
99,48784
1,130779
102,7819
1,093667


ILMN_3087518
Dido1
9,812321
1,018148
97,99077
1,019697


ILMN_1228448
Cd19
0,980663
0,009872
0,979249
9,960054


ILMN_2977690
Tm9sf4
0,992089
10,24256
0,980575
105,3711


ILMN_2505970
Tmc5
98,36548
0,986988
99,20843
0,958709


ILMN_2732649
Tmem107
99,31399
0,98021
101,2245
0,986103


ILMN_2645662
Tmem86a
0,985481
8,866486
0,975585
878,4668


ILMN_2441635
Tomm34
101,2956
1,024865
1022,77
0,102703


ILMN_1227012
Ndufb4
0,985371
0,00103
0,09931
103,154


ILMN_2419998
Soat1
1,003797
8,423494
0,097272
83,96302


ILMN_2607612
Sp2
100,5908
1,00328
102,9451
0,103512


ILMN_1221425
Spaca5
0,973755
0,997833
9,798517
100,9814


ILMN_1248179
Spag11
98,6397
0,098584
96,21745
1,017883


ILMN_1227250
Specc1l
0,963339
1,036285
0,930749
101,1408


ILMN_1227250
Specc1l
0,963339
1,036285
0,930749
101,1408


ILMN_2639777
Sphk2
10,1154
1,011834
10,1043
100,6965


ILMN_2818294
Srpx2
100,8231
0,100387
98,63012
1,016853


ILMN_3023573
Ssbp1
100,3159
1,022076
98,92587
0,998213


ILMN_2783117
Tas2r140
98,39451
1,015511
97,5502
0,963632


ILMN_2463080
Tbx13
10,10685
10,24209
98,87766
101,2983


ILMN_3072487
Tcfap2b
0,985614
9,853532
0,993813
1061,242


ILMN_2650280
Sod2
9,524808
1,131742
9,612056
0,115816


ILMN_1227889
Pias3
1,022192
1,025845
10,27761
1040,663


ILMN_2631014
Pias3
0,999235
1,004021
0,994658
98,45135


ILMN_2770667
Acin1
0,979681
0,097175
0,946506
99,56963


ILMN_1216022
Aclp7
1,00318
10,64468
10,17214
104,08








Claims
  • 1.-6. (canceled)
  • 7. A method for suppressing an immune response in a subject in need of such a treatment, the method comprising: administering to the subject a sia alpha modified antigen.
  • 8. The method according to claim 7, wherein the subject ha been diagnosed as suffering from an autoimmune disease.
  • 9. The method according to claim 8, wherein the autoimmune disease is selected from the group consisting of multiple sclerosis, rheumatoid arthritis, diabetes type 1, gastritis and inflammatory bowel disease.
  • 10. The method according to claim 7, wherein the subject ha been diagnosed as suffering from an inflammatory disease.
  • 11. The method according to claim 10, wherein the inflammatory disease is selected from the group consisting of psoriasis, allergy, Alzheimer's disease, Parkinson's disease and transplantation.
  • 12. The method according to claim 7, wherein the antigen is selected from the group consisting of the antigens of table 1.
  • 13. The method according to claim 7, wherein the sia alpha modified antigen is a sia alpha 2.3 modified antigen or a sia alpha 2,6 modified antigen.
Priority Claims (1)
Number Date Country Kind
10195279.4 Dec 2010 EP regional
PCT Information
Filing Document Filing Date Country Kind 371c Date
PCT/EP2011/073006 12/15/2011 WO 00 11/18/2013