Method for treating a patient with neoplasia by treatment with a pyrimidine analog

Abstract

This invention provides a method for treating a patient with neoplasia by an adjuvant therapy that includes treatment with a pyrimidine analog.

Description

BACKGROUND OF THE INVENTION

[0002] Virtually all of the many antineoplastic drugs that are currently used in the treatment of cancer have very serious and harmful side effects. This is because cancer is generally treated with medications that interfere with the growth of rapidly dividing cells. Such medications can inhibit the growth of the cancer cells, but they almost always also inhibit the growth of normal cells that divide rapidly in the body. Some of the normal tissues that divide very rapidly include bone marrow (which produces blood cells), hair follicles, and intestinal epithelium. The usefulness of virtually all antineoplastic drugs is severely limited by the damage they cause to these normal tissues.

[0003] This invention relates to methods for treating neoplasia using both a pyrimidine analog (a common chemotherapeutic) and a cyclic GMP (cGMP)-specific phosphodiesterase (PDE) inhibitor to reduce the side effects or increase the efficacy of treatment with a pyrimidine analog. Under current practice, pyrimidine analogs (e.g., fluorouracil) are typically used to treat certain cancers, particularly cancers of the breast, colon, and pancreas.

[0004] A nucleotide consists of a nitrogenous base, a sugar, and one or more phosphate groups. The nitrogenous base can be a derivative of a purine or a pyrimidine. The pyrimidines are thymine, cytocine, and uracil. Pyrimidine analogs are a class of agents which are able to inhibit the biosynthesis of pyrimidine nucleotides or to mimic the natural pyrimidines and thereby interfere with the function of nucleic acids.

[0005] The pyrimidine derivative fluorouracil (5-fluorouracil or 5-FU) has been used most often to treat carcinomas of the breast, colon, rectum, stomach, and pancreas. It has also been used to treat cancers of the esophagus, ovaries, cervix, bladder, and liver. Fluorouracil is usually given intravenously, but can also be used topically as a solution or a cream for malignant keratoses of the skin. The topical preparations of fluorouracil are marketed under the names Efudex and Fluoroplex.

[0006] Fluorouracil is an antineoplastic antimetabolite. One of the products of fluorouracil is a potent inhibitor of thymidylate synthesis. Fluorouracil is commonly used with folinic acid (Leucovorin) which is metabolized to a reduced folate cofactor, necessary to enable the fluoropyrimidine to lock thymidylate synthase in its inhibited state. This inhibition leads to a depletion of TTP, one of the necessary components of DNA, resulting in the inhibition of DNA synthesis. Fluorouracil can also be incorporated into RNA in place of uracil, which is thought to interfere with protein synthesis. With the intracellular supply of TTP depleted, fluorouracil metabolites are incorporated into both DNA and RNA, leading to fluorouracil's toxic effects. Because the dimensions of the fluorine atom are similar to those of hydrogen, the substitution of hydrogen with a fluorine atom at the 5-position creates a molecule that is similar enough to the natural pyrimidine to interact with enzymes that metabolize uracil, but dissimilar enough so it interferes with normal pyrimidine action.

[0007] The most dangerous side effect of fluorouracil is its hematological toxicity. The Physicians' Desk Reference warns that treatment with fluorouracil at a therapeutic level is not likely to occur without evidence of its toxicity. Fluorouracil causes bone marrow depression which decreases the production of blood cells. Fluorouracil causes leukopenia, or a decrease in the number of white blood cells. This decreases the body's ability to fight off infection. Fluorouracil also causes thrombocytopenia, a decrease in the number of platelets, which are necessary for proper blood clotting. Other side effects include sores around the mouth and the lips, nausea, and diarrhea. Alopecia, or hair loss, and dermatitis are also common.

[0008] Pyrimidine analogs include analogs of deoxycytidine and thymidine that act as inhibitors of DNA synthesis, as well as analogs of uracil, such as 5-fluorouracil which is thought to inhibit RNA function or processing and synthesis of thymidylate. The halogenated pyrimidines include 5-fluorouracil (5-FU), floxuridine (5-fluoro-2′-deoxyuridine, or FUdR), and idoxuridine (5-iododeoxyuridine). Idoxuridine acts as a thymidine analog and can be phosphorylated and incorporated into DNA.

[0009] The cytidine analogs include cytarabine, 5-Azacytidine, and 2′, 2′-difluorodeoxycytidine. Cytarabine (cytosine arabinoside or AraC) is used in the treatment of acute myelocytic leukemia. AraC can be phosphorylated and compete with dCTP for incorporation into DNA. If incorporated into DNA, AraC can block DNA chain elongation.

SUMMARY OF THE INVENTION

[0010] This invention relates to an improved method of cancer therapy that involves treating a patient with both a pyrimidine analog (e.g., fluorouracil) and a cyclic GMP-specific phosphodiesterase (PDE) inhibitor. The specific PDE inhibitors useful for this invention are compounds that inhibit both PDE5 and the new cGMP-specific PDE described below. The novel cGMP-PDE is fully described by Liu, et al., in the copending U.S. patent application Ser. No. 09/173,375 (Case No. P-143), A Novel Cyclic GMP-Specific Phosphodiesterase And Methods For Using Same In Pharmaceutical Screening For Identifying Compounds For Inhibition Of Neoplastic Lesions. (For general PDE background, see, Beavo, J. A. (1995) Cyclic nucleotide phosphodiesterases: functional implications of multiple isoforms. Physiological Reviews 75:725-747; web site <http://weber.u.washington.edu/˜pde/pde.html> (November 1998)).

[0011] In this invention, the cGMP-specific PDE inhibitor can be used in combination with a pyrimidine analog in two ways. The first is a lower dosage methodology in which the traditionally recommended dose range of the pyrimidine analog is decreased while its therapeutic effects are maintained and its side effects are attenuated. The second is a higher dosage methodology that utilizes the traditionally recommended dose range for the pyrimidine analog and improves its activity without increasing its side effects. With each methodology, the pyrimidine analog is administered simultaneously with or in succession with an appropriate cGMP-specific PDE inhibitor.

[0012] In the low dose regime, a pyrimidine analog is administered at doses less than about 6 mg/km. In the high dose regime, a pyrimidine analog is administered at doses between about 6 and 12 mg/km.

BRIEF DESCRIPTION OF THE DRAWINGS

[0013] FIG. 1 is a graph of the cGMP activities of the cGMP phosphodiesterases obtained from SW-480 neoplastic cells, as assayed from a the eluent from a DEAE-Trisacryl M column.

[0014] FIG. 2 is a graph of cGMP activities of the reloaded cGMP phosphodiesterases obtained from SW-480 neoplastic cells, as assayed from a the eluent from a DEAE-Trisacryl M column.

[0015] FIG. 3 is a graph of the kinetic behavior of the novel PDE.

[0016] FIG. 4 illustrates the inhibitory effects of sulindac sulfide and exisulind on PDE4 and PDE5 purified from cultured tumor cells.

[0017] FIG. 5 illustrates the effects of sulindac sulfide on cyclic nucleotide levels in HT-29 cells.

[0018] FIG. 6 illustrates the phosphodiesterase inhibitory activity of Compound B.

[0019] FIG. 7 illustrates the phosphodiesterase inhibitory activity of Compound E.

[0020] FIG. 8 illustrates the effects of sulindac sulfide and exisulind on tumor cell growth.

[0021] FIG. 9 illustrates the growth inhibitory and apoptosis-inducing activity of sulindac sulfide and control (DMSO).

[0022] FIG. 10 illustrates the growth inhibitory activity of compound E.

[0023] FIG. 11 illustrates the effects of sulindac sulfide and exisulind on apoptosis and necrosis of HT-29 cells.

[0024] FIG. 12 illustrates the effects of sulindac sulfide and exisulind on HT-29 cell growth inhibition and apoptosis induction as determined by DNA fragmentation.

[0025] FIG. 13 illustrates the apoptosis inducing properties of Compound E.

[0026] FIG. 14 illustrates the apoptosis inducing properties of Compound B.

[0027] FIG. 15 illustrates the inhibition of pre-malignant, neoplastic lesions in mouse mammary gland organ culture by sulindac metabolites.

DETAILED DESCRIPTION OF THE PREFERRED EMBODIMENTS

[0028] As discussed in greater detail below, the inhibition of cGMP-specific PDEs can induce apoptosis in neoplastic cells. Pyrimidine analog derivatives are currently used to treat neoplasias, particularly breast, colorectal and pancreatic cancers. The combination of these two types of therapies can produce an effect that neither can produce individually.

[0029] I. The Novel cGMP-specific Phosphodiesterase

[0030] A new cyclic GMP-specific phosphodiesterase has been discovered in neoplastic cells. Treatment of cells with a compound that inhibits both PDE5 and this novel cGMP-specific PDE leads to apoptosis of the neoplastic cells. In other words, the preferred cGMP-specific inhibitors useful in this invention, in combination with a pyrimidine analog, are those compounds that inhibit both PDE5 and this new PDE.

[0031] The new PDE is broadly characterized by

[0032] (a) cGMP specificity over cAMP;

[0033] (b) positive cooperative kinetic behavior in the presence of cGMP substrate;

[0034] (c) submicromolar affinity for cGMP; and

[0035] (d) insensitivity to incubation with purified cGMP-dependent protein kinase.

[0036] As discussed below, this new cGMP-PDE is unique from the classical PDE5. Kinetic data reveal that the new PDE has increased cGMP hydrolytic activity in the presence of increasing cGMP substrate concentrations, unlike PDE5 which exhibits cGMP substrate saturation. The new cGMP-PDE is insensitive to incubation with cGMP-dependent protein kinase (PKG), whereas PDE5 is phosphorylated by PKG. Additionally, the new cGMP-PDE is relatively insensitive to inhibition with the PDE5-specific inhibitors, zaprinast and E4021. Finally, the new cGMP-PDE activity can be separated from classical PDE5 activity by anion-exchange chromatography.

[0037] The new cGMP-PDE is not a member of any of the other previously characterized PDE families. The new PDE does not hydrolyze cAMP significantly. Calcium (with or without calmodulin) failed to activate either cAMP or cGMP hydrolysis activity, indicating that the novel PDE is not a CaM-PDE (PDE1). Additionally, cGMP failed to activate or inhibit cAMP hydrolysis, indicating that the new cGMP-PDE it is not a cGMP-stimulated PDE (cGS-PDE or PDE2), because all known isoforms of the PDE2 family hydrolyze both cAMP and cGMP. Further, the new cGMP-PDE is insensitive to a number of specific PDE inhibitors. It is relatively insensitive to vinpocetine (a CaM-PDE- or PDE1-specific inhibitor), to indolodan (a cGI-PDE- or PDE3-specific inhibitor), and to rolipram (a cAMP-PDE- or PDE4-specific inhibitor). The data establish that the new PDE is not a member of one of the cAMP-hydrolyzing PDE families (PDE 1, PDE2, PDE3, or PDE4).

[0038] PDE inhibitors that are useful for treating patients with neoplasia consistent with this invention should inhibit both PDE5 and the new cGMP-PDE. A compound that inhibits both forms of cGMP-specific PDE is desirable because a compound that inhibits PDE5 but not the new PDE, does not by itself induce apoptosis. For example, zaprinast, sildenafil, and E4021 have been reported as potent inhibitors of PDE5. However, compared to PDE5, the new PDE is relatively insensitive to zaprinast, sildenafil, and E4021 (Table 1). And none of the three, zaprinast, sildenafil, or E4021, have been found to induce apoptosis (Table 6) or to inhibit cell growth in neoplastic cells (Tables 3 and 4).

[0039] However, a number of PDE5 inhibitors have been found to induce apoptosis in neoplastic cells. Examples of such compounds are sulindac sulfide and Compound E. Sulindac sulfide and Compound E each inhibit PDE5 and the new cGMP-PDE with the same potency (Table 1). And both sulindac sulfide and Compound E induce apoptosis in neoplastic cells (Table 6). Compounds that inhibit PDE5, but not the new cGMP-PDE, do not cause apoptosis in neoplastic cells. But compounds that inhibit both PDE5 and the new cGMP-PDE, have been found to induce apoptosis in neoplastic cells.

[0040] A. Isolation of the Novel cGMP-specific Phosphodiesterase

[0041] The novel cGMP-specific phosphodiesterase can be isolated from human carcinoma cell lines (e.g. SW-480, a human colon cancer cell line that originated from a moderately differentiated epithelial adenocarcinoma, available from the American Tissue Type Collection in Rockville, Md., U.S.A.). The complete isolation of this new cGMP-PDE is described in the copending application, Liu, et al., U.S. patent application Ser. No. 09/173,375 (Case No. P-143), A Novel Cyclic GMP-Specific Phosphodiesterase And Methods For Using Same In Pharmaceutical Screening For Identifying Compounds For Inhibition Of Neoplastic Lesions, which is incorporated herein by reference.

[0042] Briefly, to isolate the novel phosphodiesterase, SW-480 cells are collected and homogenized. The homogenate is centrifuged, and the supernatant is loaded onto a DEAE-Trisacryl M column. The loaded column is then washed, and PDE activities are eluted with a linear gradient of NaOAc. Fractions are collected and immediately assayed for cGMP hydrolysis activity. Cyclic nucleotide PDE activity of each fraction is determined using the modified two-step radioisotopic method of Thompson et al. (Thompson W. J., et al., Adv Cyclic Nucleotide Res 10: 69-92, 1979). There are two initial peaks of cGMP-PDE activity eluted from the column, peak A and peak B (see FIG. 1). Peak A is PDE5, whereas peak B is the new cGMP-PDE.

[0043] To further fractionate the cGMP hydrolytic activity of PDE5 and the new cGMP-PDE, the fractions containing those activities are reloaded onto the DEAE-Trisacryl M column and eluted with a linear gradient of NaOAc. Fractions are again immediately assayed for cGMP hydrolysis activity, the results of which are presented in FIG. 2. As illustrated in FIG. 2, peak B, the novel PDE, shows enhanced activity with increasing cGMP substrate concentration. Peak A, on the other hand, shows apparent substrate saturation with increasing concentrations of cGMP.

[0044] B. cGMP-specificity of PDE Peaks A and B

[0045] Each fraction from the DEAE column was also assayed for cGMP-hydrolysis activity (0.25 μM cGMP) in the presence or absence of Ca++, or Ca++-CaM and/or EGTA and for cAMP (0.25 μM cAMP) hydrolysis activity in the presence or absence of 5 μM cGMP. Neither PDE peak A nor peak B (fractions 5-22; see FIG. 1) hydrolyzed cAMP significantly, establishing that neither was a member of a cAMP hydrolyzing family of PDEs (i.e. a PDE 1, 2, 3).

[0046] Ca++ (with or without calmodulin) failed to activate either cAMP or cGMP hydrolysis activity of either peak A or B, and cGMP failed to activate or inhibit cAMP hydrolysis. Such results establish that peaks A and B constitute cGMP-specific PDEs but not PDE1, PDE2, PDE3, or PDE4.

[0047] For PDE peak B, as discussed below, cyclic GMP activated the cGMP hydrolytic activity of the enzyme, but did not activate any cAMP hydrolytic activity. This reveals that PDE peak B—the novel phosphodiesterase—is not a cGMP-stimulated cyclic nucleotide PDE (“cGS”) or among the PDE2 family isoforms because the known isoforms of PDE2 hydrolyze both cGMP and cAMP.

[0048] C. Peak A is a PDE5, but Peak B—A New cGMP-specific PDE—is not

[0049] To characterize any PDE isoform, kinetic behavior and substrate preference should be assessed. Peak A showed typical “PDE5” characteristics. For example, the Km of the enzyme for cGMP was 1.07 μM, and Vmax was 0.16 nmol/min/mg. In addition, as discussed below, zaprinast (IC50=1.37 μM), E4021 (IC50=3 nM), and sildenafil inhibited activity of peak A. Further, zaprinast showed inhibition for cGMP hydrolysis activity of peak A, consistent with results reported in the literature for PDE5.

[0050] PDE peak B showed considerably different kinetic properties as compared to PDE peak A. For example, in Eadie-Hofstee plots of peak A, cyclic GMP hydrolysis shows a single line with negative slope with increasing substrate concentrations, indicative of Michaelis-Menten kinetic behavior. Peak B, however, shows the novel property for cGMP hydrolysis in the absence of cAMP of a decreasing (apparent Km=8.4), then increasing slope (Km<1) of Eadie-Hotfstee plots with increasing cGMP substrate (see FIG. 3). This establishes peak B's submicromolar affinity for cGMP (i.e., where Km<1).

[0051] Consistent with the kinetic studies (i.e., FIG. 3) and positive-cooperative kinetic behavior in the presence of cGMP substrate, was the increased cGMP hydrolytic activity in the presence of increasing concentrations of cGMP substrate. This was discovered by comparing 0.25 μM, 2 μM, and 5 μM concentrations of cGMP in the presence of PDE peak B after a second DEAE separation to rule out cAMP hydrolysis and to rule out this new enzyme being a “classic” PDE5. Higher cGMP concentrations evoked disproportionately greater cGMP hydrolysis with PDE peak B, as shown in FIG. 2.

[0052] These observations suggest that cGMP binding to the peak B enzyme causes a conformational change in the enzyme.

[0053] D. Zaprinast- and Sildenafil-insensitivity of PDE Peak B Relative to Peak A, and Their Effects on Other PDE Inhibitors

[0054] Different PDE inhibitors were studied using twelve concentrations of drug from 0.01 to 100 μM and substrate concentration of 0.25 μM 3H-cGMP. IC50 values were calculated with variable slope, sigmoidal curve fits using Prism 2.01 (GraphPad). The results are shown in Table 1. While compounds E4021 and zaprinast inhibited peak A, (with high affinities) IC50 values calculated against peak B are significantly increased (>50 fold). This confirms that peak A is a PDE5. These data further illustrate that the novel PDE is, for all practical purposes, zaprinast-insensitive and E4021-insensitive.

TABLE 1
Comparison of PDE Inhibitors Against Peak A and Peak B
(cGMP Hydrolysis)
		IC50	IC50
	PDE Family	Peak A	Peak B	Ratio (IC50
Compound	Inhibitor	(μM)	(μM)	Peak A/Peak B)
E4021	5	0.003	8.4	0.0004
Zaprinast	5	1.4	>30	<0.05
Compound E	5 and others	0.38	0.37	1.0
Sulindac	5 and others	50	50	1.0
sulfide
Vinpocetine	1	>100	>100
EHNA	2,5	>100	3.7
Indolidan	3	31	>100	<0.31
Rolipram	4	>100	>100
Sildenafil	5	.0003	>10	<.00003

[0055] By contrast, sulindac sulfide and Compound E competitively inhibit both peak A and peak B phosphodiesterases at the same potency (for Compound E, IC50=0.38 μM for PDE peak A; IC50=0.37 μM for PDE peak B).

[0056] There is significance for the treatment of neoplasia and the selection of useful compounds for such treatment in the fact that peak B is zaprinast-insensitive whereas peaks A and B are both sensitive to sulindac sulfide and Compound E. Zaprinast, E4021, and sildenafil have been tested to ascertain whether they induce apoptosis or inhibit the growth of neoplastic cells, and the same has been done for Compound E. As explained below, zaprinast, sildenafil and E4021 do not have significant apoptosis-inducing (Table 6) or growth-inhibiting (Tables 3 and 4) properties, whereas sulindac sulfide and Compound E are precisely the opposite. In other words, the ability of a compound to inhibit both PDE peaks A and B correlates with its ability to induce apoptosis in neoplastic cells, whereas if a compound (e.g., zaprinast) has specificity for PDE peak A only, that compound will not induce apoptosis.

[0057] E. Insensitivity of PDE Peak B to Incubation with cGMP-dependent Protein Kinase

[0058] Further differences between PDE peaks A and B were observed in their respective cGMP-hydrolytic activities in the presence of varying concentrations of cGMP-dependent protein kinase (PKG, which phosphorylates typical PDE5). Specifically, peak A and peak B fractions were incubated with different concentrations of protein kinase G at 30° C. for 30 minutes. Cyclic GMP hydrolysis of both peaks was assayed after phosphorylation was attempted. Consistent with previously published information about PDE5, peak A showed increasing cGMP hydrolysis activity in response to protein kinase G incubation, indicating that peak A was phosphorylated. Peak B was unchanged, however (i.e., was not phosphorylated and was insensitive to incubation with cGMP-dependent protein kinase). These data are consistent with peak A being a PDE5 family isoform and peak B being a novel cGMP-PDE.

[0059] II. Selecting A cGMP-specific Phosphodiesterase Inhibitor for Use in This Invention

[0060] Cancer and precancer may be thought of as diseases that involve unregulated cell growth. Cell growth involves a number of different factors. One factor is how rapidly cells proliferate, and another involves how rapidly cells die. Cells can die either by necrosis or apoptosis depending on the type of environmental stimuli. Cell differentiation is yet another factor that influences tumor growth kinetics. Resolving which of the many aspects of cell growth is affected by a test compound is important to the discovery of a relevant target for pharmaceutical therapy. Assays based on this technology can be combined with other tests to determine which compounds have growth inhibiting and pro-apoptotic activity.

[0061] In this invention, particular cGMP-specific PDE inhibitors are selected for use in combination with a pyrimidine analog to treat neoplasia, especially breast, colorectal, and pancreatic cancers, in one of several ways. As indicated above, preferred PDE inhibitors are those that inhibit the activities of both PDE5 and the new cGMP-PDE. A compound can be selected for use in this invention by evaluating its effect on the cGMP hydrolytic activity on a mixture of the two enzymes (i.e., a mixture of peaks A and B) isolated from a tumor cell line. Alternatively, a compound can be selected by evaluating the compound's effect on cyclic nucleotide levels in whole neoplastic cells before and after exposure of the cells to the compound of interest. Still another alternative is to test a compound of interest against the two PDEs separately, i.e., by physically separating each activity from a tumor cell line (or by using recombinant versions of each enzyme) and testing the inhibitory action of the compound against each enzyme individually. With any of the above approaches, an appropriate PDE inhibitor can be selected for use in combination with a pyrimidine analog.

[0062] A. Phosphodiesterase Enzyme Assay

[0063] Phosphodiesterase activity (whether in a mixture or separately) can be determined using methods known in the art, such as a method using a radioactively labeled form of cGMP as a substrate for the hydrolysis reaction. Cyclic GMP labeled with tritium (3H-cGMP) is used as the substrate for the PDE enzymes. (Thompson, W. J., Teraski, W. L., Epstein, P. M., Strada, S. J., Advances in Cyclic Nucleotide Research, 10:69-92, 1979, which is incorporated herein by reference). In this assay, cGMP-PDE activity is determined by quantifying the amount of cGMP substrate that is hydrolyzed either in the presence or absence of the test compound).

[0064] In brief, a solution of defined substrate 3H-cGMP specific activity is mixed with the drug to be tested. The mixture is incubated with isolated PDE activity (either a single PDE or a mixture of PDE activities). The degree of phosphodiesterase inhibition is determined by calculating the amount of radioactivity released in drug-treated reactions and comparing those against a control sample (a reaction mixture lacking the tested compound but with the drug solvent).

[0065] B. Cyclic Nucleotide Measurements

[0066] Alternatively, the ability of a compound to inhibit cGMP-PDE activity is reflected by an increase in the levels of cGMP in neoplastic cells exposed to the test compound. The amount of PDE activity can be determined by assaying for the amount of cyclic GMP in the extract of treated cells using a radioimmunoassay (RIA). In this procedure, a neoplastic cell line is incubated with a test compound. After about 24 to 48 hours, the cells are solubilized, and cyclic GMP is purified from the cell extracts. The cGMP is acetylated according to published procedures, such as using acetic anhydride in triethylamine, (Steiner, A. L., Parker, C. W., Kipnis, D. M., J. Biol. Chem., 247(4):1106-13, 1971, which is incorporated herein by reference). The acetylated cGMP is quantitated using radioimmunoassay procedures (Harper, J., Brooker, G., Advances in Nucleotide Research, 10: 1-33, 1979, which is incorporated herein by reference).

[0067] In addition to observing increases in the content of cGMP in neoplastic cells as a result of incubation with certain test compounds, decreases in the content of cAMP have also been observed. It has been observed that a compound which is useful in the practice of this invention (i.e., one that selectively induces apoptosis in neoplastic cells, but not substantially in normal cells) follows a time course consistent with cGMP-specific PDE inhibition. Initially, the result is an increased cGMP content within minutes, and secondarily, there is a decreased cAMP content within 24 hours. The intracellular targets of these drug actions are being studied further, but current data support the concept that the initial rise in cGMP content and the subsequent fall in cAMP content precede apoptosis in neoplastic cells exposed to test compounds useful in this invention. To determine the cyclic AMP content in cell extracts, radioimmunoassay techniques similar to those described above for cGMP are used.

[0068] The change in the ratio of the two cyclic nucleotides may be a more accurate tool for evaluating cGMP-specific phosphodiesterase inhibition activity of test compounds, rather than measuring only the absolute value of cGMP, only the level of cGMP hydrolysis, or only cGMP-specific phosphodiesterase inhibition. In neoplastic cells not treated with anti-neoplastic compounds, the ratio of cGMP content/cAMP content is in the 0.03-0.05 range (i.e., 300-500 fmol/mg protein cGMP content over 6000-8000 fmol/mg protein cAMP content). After exposure to desirable anti-neoplastic compounds, that ratio increases several fold (preferably at least about a three-fold increase) as the result of an initial increase in cyclic GMP and the later decrease in cyclic AMP.

[0069] Specifically, it has been observed that particularly desirable compounds achieve an initial increase in cGMP content in treated neoplastic cells to a level of cGMP greater than about 500 fmol/mg protein. In addition, particularly desirable compounds cause the later decrease in cAMP content in treated neoplastic cells to a level of cAMP less than about 4000 fmol/mg protein.

[0070] Verification of the cyclic nucleotide content may be obtained by determining the turnover or accumulation of cyclic nucleotides in intact cells. To measure the levels of cAMP in intact cells, 3H-adenine prelabeling is used according to published procedures (Whalin M. E., R. L. Garrett Jr., W. J. Thompson, and S. J. Strada, “Correlation of cell-free brain cyclic nucleotide phosphodiesterase activities to cyclic AMP decay in intact brain slices”, Sec. Mess. and Phos. Protein Research, 12:311-325, 1989, which is incorporated herein by reference). The procedure measures flux of labeled ATP to cyclic AMP and can be used to estimate intact cell adenylate cyclase or cyclic nucleotide phosphodiesterase activities depending upon the specific protocol. Cyclic GMP accumulation was too low to be studied with intact cell prelabeling according to published procedures (Reynolds, P. E., S. J. Strada and W. J. Thompson, “Cyclic GMP accumulation in pulmonary microvascular endothelial cells measured by intact cell prelabeling,” Life Sci., 60:909-918, 1997, which is incorporated herein by reference).

[0071] C. Tissue Sample Assay

[0072] The cGMP-specific PDE inhibitory activity of a test compound can also be determined from a tissue sample. Tissue biopsies from humans or tissues from anesthetized animals are collected from subjects exposed to the test compound. Briefly, a sample of tissue is homogenized and a known amount of the homogenate is removed for protein analysis. From the remaining homogenate, the protein is allowed to precipitate. Next, the homogenate is centrifuged and both the supernatant and the pellet are recovered. The supernatant is assayed for the amount of cyclic nucleotides present using RIA procedures as described above.

[0073] D. Experimental Results

[0074] 1. Introduction

[0075] The amount of cGMP-specific inhibition is determined by comparing the activity of the cGMP-specific PDEs in the presence and absence of the test compound. Inhibition of cGMP-PDE activity is indicative that the compound is useful for treating neoplasia in combination with a pyrimidine analog. Significant inhibitory activity, greater than that of the benchmark, exisulind, and preferably greater than 50% at a concentration of 10 μM or below, is indicative that a compound should be further evaluated for antineoplastic properties. The term “exisulind” means (Z)-5-fluoro-2-methyl-1-[[4-(methylsulfonyl)phenyl] methylene]indene-3-yl acetic acid or a salt thereof.(See, Pamukcu and Brendel, U.S. Pat. No. 5,401,774.)

[0076] 2. cGMP-PDE Inhibition Assay

[0077] Reference compounds and test compounds were analyzed for their cGMP-PDE inhibitory activity in accordance with the protocol for the assay described supra. FIG. 4 shows the effect of various concentrations of sulindac sulfide and exisulind on either PDE4 or cGMP-PDE activity purified from human colon HT-29 cultured tumor cells, as described previously (W. J. Thompson et al., supra). The IC50 value of sulindac sulfide for inhibition of PDE4 was 41 μM, and for inhibition of cGMP-PDE was 17 μM. The IC50 value of exisulind for inhibition of PDE4 was 181 μM, and for inhibition of cGMP-PDE was 56 μM. These data show that both sulindac sulfide and exisulind inhibit phosphodiesterase activity. Both compounds show selectivity for the cGMP-PDE isoenzyme forms over PDE4 isoforms.

[0078] FIG. 5 shows the effects of sulindac sulfide on either cGMP or cAMP production as determined in cultured HT-29 cells in accordance with the assay described, supra. HT-29 cells were treated with sulindac sulfide for 30 minutes and cGMP or cAMP was measured by conventional radioimmunoassay method. As indicated, sulindac sulfide increased the levels of cGMP by greater than 50% with an EC50 value of 7.3 μM (FIG. 5A, top). Levels of cAMP were unaffected by treatment, although a known PDE4 inhibitor, rolipram, increased cAMP levels (FIG. 5B, bottom). The data demonstrate the pharmacological significance of inhibiting cGMP-PDE, relative to PDE4.

[0079] FIG. 6 shows the effect of the indicated dose of test Compound B, described below, on either cGMP-PDE or PDE4 isozymes of phosphodiesterase. The calculated IC50 value was 18 μM for cGMP-PDE and 58 μM for PDE4.

[0080] FIG. 7 shows the effect of the indicated dose of test Compound E, described below, on either PDE4 or cGMP-PDE. The calculated IC50 value was 0.08 μM for cGMP-PDE and greater than 25 μM for PDE4.

[0081] Compounds

[0082] A number of compounds were examined in the various protocols and screened for potential use in treating neoplasia. The results of these tests are reported below. The test compounds are hereinafter designated by a letter code that corresponds to the following:

[0083] A—rac-threo-(E)-1-(N,N′-diethylaminoethanethio)-1-(butan-1′,4′-olido)-[3′,4′:1,2′]-6-fluoro-2-methyl-3-(p-methylsulfonylbenzylidene)-indan;

[0084] B—(Z)-5-Fluoro-2-methyl-1-(3,4,5-trimethoxybenzylidene)-3-acetic acid;

[0085] C—(Z)-5-Fluoro-2-methyl-1-(p-chlorobenzylidene)-3-acetic acid;

[0086] D—rac-(E)-1-(butan-1′,4′-olido)-[3′,4′:1,2]-6-fluoro-2-methyl-3-(p-methylsulfonylbenzylidene)-1S-indanyl-N-acetylcysteine;

[0087] E—(Z)-5-Fluoro-2-methyl-1-(3,4,5-trimethoxybenzylidene)-3-indenylacetamide, N-benzyl;

[0088] F—(Z)-5-Fluoro-2-methyl-1-(p-methylsulfonylbenzylidene)-3-indenylacetamide, N,N′-dicyclohexyl;

[0089] G—ribo-(E)-1-Triazolo-[2′,3′:1″,3″]-1-(butan-1′,4′-olido)-[3′,4′:1,2]-6-fluoro-2-methyl-3-(p-methylsulfonylbenzylidene)-indan; and

[0090] H—rac-(E)-1-(butan-1′,4′-olido)-[3′,4′:1,2]-6-fluoro-2-methyl-3-(p-methylsulfonylbenzylidene)-1 S-indanyl-glutathione).

TABLE 2
cGMP PDE Inhibitory Activity Among a Series of Compounds
Reference compounds % Inhibition at 10 μM
Indomethacin        34
MY5445              86
Sulindac sulfide    97
Exisulind           39
Test compounds      % Inhibition at 100 μM
A                   <25
B                   <25
C                   <25
D                   36
E                   75

[0091] The above compounds in Table 2 were evaluated for PDE inhibitory activity in HT-29 cells, as described in the protocol, supra. Of the compounds that did not inhibit COX, only Compound E was found to cause greater than 50% inhibition at 10 μM. As noted in FIG. 6, Compound B showed inhibition of greater than 50% at a dose of 20 μM. Therefore, depending on the dosage level used in a single dose test, some compounds may be screened out that otherwise may be active at slightly higher dosages. The dosage used is subjective and may be lowered to identify even more potent compounds after active compounds are found at certain concentration levels.

[0092] III. Determining Whether a Compound Reduces the Number of Tumor Cells

[0093] In an alternate embodiment, the preferred cGMP-specific inhibitors useful in the practice of this invention are selected by further determining whether the compound reduces the growth of tumor cells in vitro. Various cell lines can be used depending on the tissue to be tested. For example, these cell lines include: SW-480—colonic adenocarcinoma; HT-29—colonic adenocarcinoma; A-427—lung adenocarcinoma; MCF-7—breast adenocarcinoma; UACC-375—melanoma line; and DU145—prostrate carcinoma. Cytotoxicity data obtained using these cell lines are indicative of an inhibitory effect on neoplastic lesions. These cell lines are well characterized, and are used by the United States National Cancer Institute in their screening program for new anti-cancer drugs.

[0094] A. Tumor Inhibition in the HT-29 Cell Line

[0095] A compound's ability to inhibit tumor cell growth can be measured using the HT-29 human colon carcinoma cell line obtained from ATCC (Bethesda, Md.). HT-29 cells have previously been characterized as a relevant colon tumor cell culture model (Fogh, J., and Trempe, G. In: Human Tumor Cells in Vitro, J. Fogh (ed.), Plenum Press, New York, pp. 115-159, 1975). Briefly, after being grown in culture, HT-29 cells are fixed by the addition of cold trichloroacetic acid. Protein levels are measured using the sulforhodamine B (SRB) calorimetric protein stain assay as previously described by Skehan, P., Storeng, R., Scudiero, D., Monks, A., McMahon, J., Vistica, D., Warren, J. T., Bokesch, H., Kenney, S., and Boyd, M. R., “New Colorimetric Assay For Anticancer-Drug Screening,” J. Natl. Cancer Inst. 82: 1107-1112, 1990, which is incorporated herein by reference.

[0096] In addition to the SRB assay, a number of other methods are available to measure growth inhibition and could be substituted for the SRB assay. These methods include counting viable cells following trypan blue staining, labeling cells capable of DNA synthesis with BrdU or radiolabeled thymidine, neutral red staining of viable cells, or MTT staining of viable cells.

[0097] B. Experimental Results

[0098] 1. Introduction

[0099] Significant tumor cell growth inhibition, greater than about 50% at a dose of 100 μM or below is further indicative that the compound is useful for treating neoplastic lesions. Preferably, an IC50 value is determined and used for comparative purposes. This value is the concentration of drug needed to inhibit tumor cell growth by 50% relative to the control. Preferably, the IC50 value should be less than 100 μM for the compound to be considered useful for treating neoplastic lesions in combination with a pyrimidine analog according to the method of this invention.

[0100] 2. Growth Inhibition Assay

[0101] Reference compounds and test compounds were analyzed for their cGMP-PDE inhibitory activity in accordance with the protocol for the assay, supra. FIG. 8 shows the inhibitory effect of various concentrations of sulindac sulfide and exisulind on the growth of HT-29 cells. HT-29 cells were treated for six days with various doses of exisulind (triangles) or sulindac sulfide (squares) as indicated. Cell number was measured by a sulforhodamine assay as previously described (Piazza et al., Cancer Research, 55: 3110-3116, 1995). The IC50 value for sulindac sulfide was approximately 45 μM and for exisulind was approximately 200 μM. The data show that both sulindac sulfide and exisulind are capable of inhibiting tumor cell growth.

[0102] FIG. 9 shows the growth inhibitory and apoptosis-inducing activity of sulindac sulfide. A time course experiment is shown involving HT-29 cells treated with either vehicle, 0.1% DMSO (open symbols) or sulindac sulfide, 120 μM (closed symbols). Growth inhibition (FIG. 9A, top) was measured by counting viable cells after trypan blue staining. Apoptosis (FIG. 9B, bottom) was measured by morphological determination following staining with acridine orange and ethidium bromide as described previously (Duke and Cohen, In: Current Protocols in Immunology, 3.17.1-3.17.16, New York, John Wiley and Sons, 1992). The data demonstrate that sulindac sulfide is capable of inhibiting tumor cell growth and that the effect is accompanied by an increase in apoptosis. All data were collected from the same experiment.

[0103] FIG. 10 shows the growth inhibitory activity of test Compound E. HT-29 colon adenocarcinoma cells were treated with the indicated concentration of Compound E for six days and cell number was determined by the SRB assay. The calculated IC50 value was 0.04 μM.

TABLE 3
Growth Inhibitory Activity Among a Series of Compounds
% Inhibition at 100 μM
Reference compounds
Indomethacin     75
MY5445           88
Sulindac sulfide 88
Exisulind        <50
E4021            <50
sildenafil       <50
zaprinast        <50
Test compounds
A                68
B                77
C                80
D                78
E                62

[0104] In accordance with the screening protocol, supra, Compounds A through E were tested for growth inhibitory activity, as reported in Table 3 above. All the test compounds showed activity exceeding the benchmark exisulind at a 100 μM single dose test.

[0105] The growth inhibitory activity for a series of phosphodiesterase inhibitors was determined. The data are shown in Table 4 below. HT-29 cell were treated for 6 days with various inhibitors of phosphodiesterase. Cell growth was determined by the SRB assay described, supra. The data below taken with those above show that inhibitors of the cGMP-specific PDE activity were effective for inhibiting tumor cell growth.

TABLE 4
Growth Inhibitory Data for PDE Inhibitors
		Reported	Growth inhibition
	Inhibitor	Selectivity	(IC50, μM)
	8-methoxy-IBMX	PDE1	>200 μM
	Milrinone	PDE3	>200 μM
	RO-20-1724	PDE4	>200 μM
	MY5445	PDE5	5 μM
	IBMX	Non-selective	>100 μM
	Zaprinast	PDE5	>100 μM
	Sildenafil	PDE5	>100 μM
	E4021	PDE5	>100 μM

[0106] To show the effectiveness of cGMP-specific PDE inhibition on various forms of neoplasia, compounds were tested on numerous cell lines. The effects of sulindac sulfide and exisulind on various cell lines was determined. The data are shown in Table 5 below. The IC50 values were determined by the SRB assay. The data show the effectiveness of these compounds on a broad range of neoplasias, with effectiveness at comparable dose range. Therefore, compounds selected for cGMP-specific PDE inhibition in combination with a pyrimidine analog should be useful for treating neoplasia, in particular breast, colorectal and pancreatic cancers.

TABLE 5
Growth Inhibitory Data of Various Cell Lines
Cell Type/	IC50 (μM)*
Tissue specificity	Sulindac sulfide	Exisulind	Compound E
HT-29, Colon	60	120	0.10
HCT116, Colon	45	90
MCF7/S, Breast	30	90
UACC375, Melanoma	50	100
A-427, Lung	90	130
Bronchial Epithelial Cells	30	90
NRK, Kidney (non ras-	50	180
transformed)
KNRK, Kidney (ras	60	240
transformed)
Human Prostate Carcinoma		82	0.90
PC3
Colo 205			1.62
DU-145			0.10
HCT-15			0.60
MDA-MB-231			0.08
MDA-MB-435			0.04
*Determined by neutral red assay as described by Schmid et al., in Proc. AACR Vol 39, p. 195 (1998).

[0107] IV. Determining Whether a Compound Induces Apoptosis

[0108] In a second alternate embodiment, preferably, the cGMP-specific PDE inhibitors useful in combination with a pyrimidine analog in the practice of this invention induce apoptosis in cultures of tumor cells.

[0109] Two distinct forms of cell death may be described by morphological and biochemical criteria: necrosis and apoptosis. Necrosis is accompanied by increased permeability of the plasma membrane; the cells swell and the plasma membrane ruptures within minutes. Apoptosis is characterized by membrane blebbing, condensation of cytoplasm, and the activation of endogenous endonucleases.

[0110] Apoptosis occurs naturally during normal tissue turnover and during embryonic development of organs and limbs. Apoptosis also is induced by cytotoxic T-lymphocytes and natural killer cells, by ionizing radiation, and by certain chemotherapeutic drugs. Inappropriate regulation of apoptosis is thought to play an important role in many pathological conditions including cancer, AIDS, Alzheimer's disease, etc. Cyclic GMP-specific PDE inhibitors useful in this invention can be selected based on their ability to induce apoptosis in cultured tumor cells maintained under conditions as described above.

[0111] Treatment of cells with test compounds involves either pre- or post-confluent cultures and treatment for two to seven days at various concentrations of the compound in question. Apoptotic cells are measured by combining both the attached and “floating” compartments of the cultures. The protocol for treating tumor cell cultures with sulindac and related compounds to obtain a significant amount of apoptosis has been described in the literature. (See, Piazza, G. A., et al., Cancer Research, 55:3110-16, 1995, which is incorporated herein by reference). The novel features include collecting both floating and attached cells, identification of the optimal treatment times and dose range for observing apoptosis, and identification of optimal cell culture conditions.

[0112] A. Analysis of Apoptosis by Morphological Observation

[0113] Following treatment with a test compound, cultures can be assayed for apoptosis and necrosis by fluorescent microscopy following labeling with acridine orange and ethidium bromide. The method for measuring apoptotic cell number has previously been described by Duke & Cohen, “Morphological And Biochemical Assays Of Apoptosis,” Current Protocols In Immunology, Coligan et al., eds., 3.17.1-3.17.16 (1992, which is incorporated herein by reference).

[0114] For example, floating and attached cells can be collected, and aliquots of cells can be centrifuged. The cell pellet can then be resuspended in media and a dye mixture containing acridine orange and ethidium bromide. The mixture can then be examined microscopically for morphological features of apoptosis.

[0115] B. Analysis of Apoptosis by DNA Fragmentation

[0116] Apoptosis can also be quantified by measuring an increase in DNA fragmentation in cells which have been treated with test compounds. Commercial photometric EIA for the quantitative in vitro determination of cytoplasmic histone-associated-DNA-fragments (mono- and oligonucleosomes) are available (Cell Death Detection ELISAokys, Cat. No. 1,774,425, Boehringer Mannheim). The Boehringer Mannheim assay is based on a sandwich-enzyme-immunoassay principle using mouse monoclonal antibodies directed against DNA and histones, respectively. This allows the specific determination of mono- and oligonucleosomes in the cytoplasmic fraction of cell lysates.

[0117] According to the vendor, apoptosis is measured in the following fashion. The sample (cell-lysate) is placed into a streptavidin-coated microtiter plate (“MTP”). Subsequently, a mixture of anti-histone-biotin and anti-DNA peroxidase conjugate are added and incubated for two hours. During the incubation period, the anti-histone antibody binds to the histone-component of the nucleosomes and simultaneously fixes the immunocomplex to the streptavidin-coated MTP via its biotinylation. Additionally, the anti-DNA peroxidase antibody reacts with the DNA component of the nucleosomes. After removal of unbound antibodies by washing, the amount of nucleosomes is quantified by the peroxidase retained in the immunocomplex. Peroxidase is determined photometrically with ABTS7 (2,2′-Azido-[3-ethylbenzthiazolin-sulfonate]) as substrate.

[0118] Fold stimulation (FS=ODmax/ODveh), an indicator of apoptotic response, is determined for each compound tested at a given concentration. EC50 values may also be determined by evaluating a series of concentrations of the test compound.

[0119] C. Experimental Results

[0120] 1. Introduction

[0121] Statistically significant increases of apoptosis (i.e., greater than 2 fold stimulation at a concentration of 100 μM) are further indicative that the cGMP-specific PDE inhibitor is useful in combination with a pyrimidine analog in the practice of this invention. Preferably, the EC50 value for apoptotic activity should be less than 100 μM for the compound to be further considered for potential use for treating neoplastic lesions. EC50 is herein defined as the concentration that causes 50% induction of apoptosis relative to vehicle treatment.

[0122] 2. Apoptosis Assay

[0123] Reference compounds and test compounds were analyzed for their cGMP-specific PDE inhibitory activity in accordance with the protocols for the assay, supra. In accordance with those protocols, FIG. 11 shows the effects of sulindac sulfide and exisulind on apoptotic and necrotic cell death. HT-29 cells were treated for six days with the indicated dose of either sulindac sulfide or exisulind. Apoptotic and necrotic cell death was determined as previously described (Duke and Cohen, In: Current Protocols in Immunology, 3.17.1-3.17.16, New York, John Wiley and Sons, 1992). The data show that both sulindac sulfide and exisulind are capable of causing apoptotic cell death without inducing necrosis. All data were collected from the same experiment.

[0124] FIG. 12 shows the effect of sulindac sulfide and exisulind on tumor growth inhibition and apoptosis induction as determined by DNA fragmentation. The top figure (12A) shows growth inhibition (open symbols, left axis) and DNA fragmentation (closed symbols, right axis) by exisulind. The bottom figure (12B) shows growth inhibition (open symbols) and DNA fragmentation (closed symbols) by sulindac sulfide. Growth inhibition was determined by the SRB assay after six days of treatment. DNA fragmentation was determined after 48 hours of treatment. All data was collected from the same experiment.

[0125] FIG. 13 shows the apoptosis inducing properties of Compound E. HT-29 colon adenocarcinoma cells were treated with the indicated concentration of Compound E for 48 hours and apoptosis was determined by the DNA fragmentation assay. The calculated EC50 value was 0.05 μM.

[0126] FIG. 14 shows the apoptosis inducing properties of Compound B. HT-29 colon adenocarcinoma cells were treated with the indicated concentration of Compound B for 48 hours and apoptosis was determined by the DNA fragmentation assay. The calculated EC50 value was approximately 175 μM.

TABLE 6
Apoptosis Inducing Activity Among a Series of Compounds
Fold induction at 100 μM
Reference compounds
Indomethacin     <2.0
MY5445           4.7
Sulindac sulfide 7.9
Exisulind        <2.0
E4021            <2.0
Zaprinast        <2.0
Sildenafil       <2.0
EHNA             <2.0
Test compounds
A                <2.0
B                3.4
C                5.6
D                <2.0
E                4.6

[0127] In accordance with the fold induction protocol, supra, Compounds A through E were tested for apoptosis inducing activity, as reported in Table 6 above. Compounds B, C, and E showed significant apoptotic inducing activity, greater than 2.0 fold, at a dosage of 100 μM. Of these three compounds, at this dosage, only Compounds B and E did not inhibit COX but did inhibit cGMP-specific PDE.

[0128] The apoptosis inducing activity for a series of phosphodiesterase inhibitors was determined. The data are shown in Table 7 below. HT-29 cell were treated for 6 days with various inhibitors of phosphodiesterase. Apoptosis and necrosis were determined morphologically after acridine orange and ethidium bromide labeling in accordance with the assay described, supra. The data show cGMP-specific PDE inhibition represents a unique pathway to induce apoptosis in neoplastic cells.

TABLE 7
Apoptosis Induction Data for PDE Inhibitors
Inhibitor	Reported Selectivity	% Apoptosis	% Necrosis
Vehicle		8	6
8-methoxy-IBMX	PDE1	2	1
Milrinone	PDE3	18	0
RO-20-1724	PDE4	11	2
MY5445	PDE5	80	5
IBMX	Non-selective	4	13

[0129] V. Mammary Gland Organ Culture Model Tests

[0130] A. Introduction

[0131] Test compounds identified by the above methods can be tested for antineoplastic activity by their ability to inhibit the incidence of preneoplastic lesions in a mammary gland organ culture system. This mouse mammary gland organ culture technique has been successfully used by other investigators to study the effects of known antineoplastic agents such as NSAIDs, retinoids, tamoxifen, selenium, and certain natural products, and is useful for validation of the methods used to select cGMP-specific PDE inhibitors useful in the present invention.

[0132] For example, female BALB/c mice can be treated with a combination of estradiol and progesterone daily, in order to prime the glands to be responsive to hormones in vitro. The animals are sacrificed and thoracic mammary glands are excised aseptically and incubated for ten days in growth media supplemented with insulin, prolactin, hydrocortisone, and aldosterone. DMBA (7,12-dimethylbenz(a)anthracene) is added to medium to induce the formation of premalignant lesions. Fully developed glands are then deprived of prolactin, hydrocortisone, and aldosterone, resulting in the regression of the glands but not the premalignant lesions.

[0133] The test compound is dissolved in DMSO and added to the culture media for the duration of the culture period. At the end of the culture period, the glands are fixed in 10% formalin, stained with alum carmine, and mounted on glass slides. The extent of the area occupied by the mammary lesions can be quantitated by projecting an image of the gland onto a digitation pad. The area covered by the gland is traced on the pad and considered as 100% of the area. The space covered by each of the unregressed structures is also outlined on the digitization pad and quantitated by the computer.

[0134] The incidence of forming mammary lesions is the ratio of the glands with mammary lesions to glands without lesions. The incidence of mammary lesions in test compound treated glands is compared with that of the untreated glands.

[0135] B. Activity in Mammary Gland Organ Culture Model

[0136] FIG. 15 shows the inhibition of premalignant lesions in mammary gland organ culture by sulindac metabolites. Mammary gland organ culture experiments were performed as previously described (Mehta and Moon, Cancer Research, 46: 5832-5835, 1986). The results demonstrate that sulindac sulfoxide and exisulind effectively inhibit the formation of premalignant lesions, while sulindac sulfide was inactive. The data support the hypothesis that cyclooxygenase inhibition is not necessary for the anti-neoplastic properties of desired compounds.

[0137] Conclusions Regarding Preferred PDE Inhibitors

[0138] To identify cGMP-inhibiting compounds that are useful for treating neoplasia in combination with a pyrimidine analog, candidate cGMP-inhibiting compounds can be selected by testing them as described above.

[0139] Qualitative data of various test compounds and the several protocols are shown in Table 8 below. The data show that exisulind, sulindac sulfide, MY5445, Compound B, and Compound E exhibit the appropriate activity to be used with a pyrimidine analog. In addition, those same compounds (except for sulindac sulfide and MY5445) are desirable because they lack COX inhibition activity. The activity of these compounds in the mammary gland organ culture validates the effectiveness of these compounds.

TABLE 8
Activity Profile of Various Compounds
					Mammary
					Gland
	COX	PDE	Growth		Organ
Compound	Inhibition	Inhibition	Inhibition	Apoptosis	Culture
Exisulind	−	++	++	++	+++
Sulindac	++++	+++	+++	+++	−
sulfide
MY5445	++++	+++	+++	+++	+
A	−	−	+++	++	++
B	−	+++	+++	+++	++
D	−	−	++	−	−
E	−	++++	++++	++++	++++
F	−	−	++	+	−
G	−	−	+++	++	+++
H	−	−	++	−	−
Table 8. Code: Activity of compounds based on evaluating a series of experiments involving tests for maximal activity and potency.
− Not active
+ Slightly active
++ Moderately active
+++ Strongly active
++++ Highly active

[0140] Combination Treatment with a Pyrimidine Analog and a cGMP-specific PDE Inhibitor

[0141] The method of this invention involves treating a patient with neoplasia with both a pyrimidine analog and a cGMP-specific PDE inhibitor. There are a number of antineoplastic pyrimidine analogs. Various antineoplastic pyrimidine analogs (e.g., fluorouracil and cytarabine) are disclosed. Other pyrimidine analogs are disclosed in U.S. Pat. Nos. 3,971,784, 4,864,021, 5,691,319, 5,744,475, 5,763,418, all of which are incorporated herein by reference. Such compositions collectively disclose non-limiting examples of “pyrimidine analogs” as that term is used herein.

[0142] This invention involves using combination therapy to treat a patient with neoplasia. By treating a patient with this combination of pharmaceuticals, a pyrimidine analog and a cGMP-specific PDE inhibitor, therapeutic results can be achieved that are not seen with either drug alone. As explained above, exisulind is one example of an appropriate cGMP-specific PDE inhibitor to be used in combination with a pyrimidine analog in the practice of this invention. Exisulind inhibits both PDE5 and the new cGMP-PDE, and treatment of neoplastic cells with exisulind results in growth inhibition and apoptosis. (See Table 8).

[0143] Exisulind has no significant side effects when administered at its recommended dose of 300-400 mg/day. When administered at doses higher than the recommended therapeutic levels, treatment with exisulind can lead to elevated levels of liver enzymes. This effect is reversible, and liver enzymes return to normal levels when the administered dose of exisulind returns to the traditionally recommended level or when treatment is discontinued. The most serious side effect of pyrimidine analogs, on the other hand, is bone marrow suppression. Since the side effects of the two drugs do not overlap, a PDE inhibitor, such as exisulind, can be used in combination with a pyrimidine analog without increasing the harmful side effects of the pyrimidine analog.

[0144] A cGMP-specific PDE inhibitor and a pyrimidine analog can be used in combination in at least two different ways. In the first method, the traditionally recommended dose range of the pyrimidine analog is reduced while its beneficial therapeutic effects are maintained and its side effects are attenuated. The second method uses the traditionally recommended dose range of the pyrimidine analog with enhanced activity but without increasing its side effects. In each of these methods, the patient is receiving both drugs, a PDE inhibitor and a pyrimidine analog, either simultaneously or in succession.

[0145] The recommended dosage of a pyrimidine analog varies depending on the type of cancer being treated and whether the pyrimidine analog is being used in combination with another chemotherapeutic agent. In the practice of this invention, a cGMP-specific PDE inhibitor is used as an additional element of cancer treatment with a pyrimidine analog alone or with a group of chemotherapeutic agents.

[0146] Fluorouracil injection is commonly administered in a 12-day sequence. The typical recommended dose of fluorouracil is 12 mg/kg once daily for the first four days and 6 mg/km on the sixth, eighth, tenth. and twelfth days. No drug is given on the fifth, seventh, ninth, or eleventh days of the sequence. For maintenance therapy, the sequence is repeated every 30 days after the last day of the previous course of treatment.

[0147] Fluorouracil is also used in combination with other chemotherapeutic agents. For example, cyclophosphamide, methotrexate and fluorouracil (CFM) have been used in combination to protect against the development of new primary tumors after mastectomy in early breast cancer. Fluorouracil has been used in combination with cisplatin in the treatment of ovary and head and neck cancer. And fluorouracil is used with leucovorin for colorectal cancer.

[0148] Other halogenated pyrimidines include floxuridine (5-fluoro-2′-deoxyuridine, or FUdR), and idoxuridine (5-iododeoxyuridine). The cytidine analogs include cytarabine, 5-Azacytidine, and 2′, 2′-difluorodeoxycytidine.

[0149] Cytarabine (cytosine arabinoside or AraC) has been used in the treatment of acute nonlymphocytic leukemia. AraC is typically administered at a dose of 100 mg/m2/day in combination with other chemotherapeutic agents.

[0150] In the practice of this invention, for each of the treatment methods mentioned above as well as other possible combinations, treatment with an appropriate cGMP-specific PDE inhibitor is added as an additional element of the therapy. A cGMP-specific PDE inhibitor and a pyrimidine analog are used in combination such that the blood levels of the inhibitor are at approximately the IC50 value of the inhibitor for growth inhibition. In the case of exisulind, it is recommended that the dose be about 200 to 400 mg/day administered between two to four times a day.

[0151] In one embodiment of this invention, the lower dose methodology, fluorouracil is administered at a dosage lower than the traditionally recommended dose of about 6 mg/kg in combination with a cGMP-specific PDE inhibitor. Similarly, for cytarabine, a dosage of less than 100 mg/m2/day is administered in combination with a cGMP-specific PDE inhibitor in the practice of the lower dose methodology of this invention. Accordingly, the combination of therapies allows the benefits of pyrimidine analog treatment to be maintained while its side effects are reduced.

[0152] In the second embodiment, the dosage of fluorouracil is maintained at its traditionally recommended dose, between 6 mg/kg and 12 mg/kg, depending in the type of cancer being treated, and is administered in combination with a cGMP-specific PDE inhibitor. Similarly, for cytarabine, a dosage of about 100 mg/m2/day can be maintained in combination with a cGMP-specific PDE inhibitor. The combination, in this case, increases the efficacy of treatment with a pyrimidine analog without increasing its harmful side effects.

[0153] In each of the aforementioned methodologies, the pyrimidine analog and the cGMP-specific PDE inhibitor may be administered simultaneously or in succession, one after the other.

[0154] Obviously, numerous modifications and variations of the present invention are possible in light of the above teachings. It is therefore to be understood that within the scope of the appended claims, the invention may be practiced otherwise than as specifically described herein.

Claims

1. A method of inhibiting the growth of neoplastic lesions in a patient comprising administering to the patient a pyrimidine analog and a cGMP-specific phosphodiesterase inhibitor.

2. The method of claim 1 wherein the pyrimidine analog is administered simultaneously with the cGMP-specific phosphodiesterase inhibitor.

3. The method of claim 1 wherein the pyrimidine analog is administered alternatingly with the cGMP-specific phosphodiesterase inhibitor.

4. The method of claim 1 wherein the cGMP-specific phosphodiesterase inhibitor inhibits the phosphodiesterase characterized by (a) cGMP specificity over cAMP; (b) positive cooperative kinetic behavior in the presence of cGMP substrate; (c) submicromolar affinity for cGMP; and (d) insensitivity to incubation with purified cGMP-dependent protein kinase.

5. The method of claim 1 wherein the cGMP-specific phosphodiesterase inhibitor also inhibits PDE 5.

6. The method of claim 1 wherein the cGMP-specific phosphodiesterase inhibitor is exisulind.

7. The method of claim 4 wherein the cGMP-specific phosphodiesterase inhibitor also inhibits PDE 5.

8. The method of claim 4 wherein the cGMP-specific phosphodiesterase inhibitor is exisulind.

9. The method of claim 1 wherein the pyrimidine analog is administered in a dose less than 6 mg/kg.

10. The method of claim 1 wherein the pyrimidine analog is administered in a dose between about 6 mg/kg and 12 mg/kg.