This application claims priority to foreign European patent application No. EP 19306589.3, filed on Dec. 6, 2019, the disclosure of which is incorporated by reference in its entirety.
The invention relates to a method of designing a pulse sequence for parallel-transmission magnetic resonance imaging and of performing parallel-transmission magnetic resonance imaging using such a sequence. A pulse sequence comprises one or more radio-frequency (RF) waveforms, or pulses, and at least one magnetic field gradient waveform, allowing manipulating the nuclear magnetization of a sample immersed in a static magnetic field, resulting from the orientation of nuclear spins.
High field magnetic resonance imaging (MRI) has proved its utility in clinical routine thanks to the high signal-to-noise ratio (SNR) it provides, allowing finer temporal and/or spatial resolutions. However, a number of problems inherent to high field still hamper the spread of high-field (3 T-7 T) scanners in hospitals worldwide. Among them is the “B1 artifact” that occurs when the RF wavelength gets close to, or smaller than, the imaged region ([1]). In such a case, the transmitted radio-frequency “B1*” field becomes inhomogeneous within the region of interest, resulting in an inhomogeneous distribution of nuclear magnetization flip angles. This leads to the appearance of zones of shade and loss of contrast, which can affect diagnosis by hiding pathologies or by altering the observed enhancement ratio in contrast-agent-injected sequences. At 3 T, this artifact is particularly pregnant in abdominal imaging, and it becomes very problematic for brain imaging at ultra-high fields (UHF—7 T and above).
Passive RF shimming involves the use of dielectric pads for compensating B1 inhomogeneity ([2]). Its effectiveness is somehow limited.
Active RF shimming makes use of parallel transmission (pTx), i.e. of multiple RF coils for exciting nuclear spins. Two main sorts of active RF shimming techniques exist: static and dynamic.
In static active RF shimming, the plurality of radio-frequency RF coil elements all transmit the same RF pulse with different complex weights, optimized to homogenize the B1 field [3]. For abdomen imaging at 3 T, this technique is satisfactory for most patients, but it fails to offer homogeneous-enough excitation in about 10 to 20% of the cases, which is not acceptable. For higher field values, static active RF shimming is usually not satisfactory.
Dynamic RF shimming [4] consists in using multiple RF coils to simultaneously transmit respective RF pulses having different temporal waveforms, usually defined by complex time-varying envelopes. This technique allows achieving better uniformity than static shimming, but its complexity has made it essentially a research tool.
Reference [5] demonstrates the superiority of kT-points [6] dynamic RF shimming in clinical routine for nonselective excitation of the abdomen at 3 T.
Optimizing weighting coefficients (static shimming) or RF waveforms (dynamic shimming) requires calibration consisting at least in the measurement of B1+ maps from each transmit channel moreover, for optimal dynamic RF shimming, an off-resonance frequency Δf0 map (corresponding to a static field inhomogeneity ΔB0 map if no chemical shift like fat tissue is present) is also required before computation of the RF pulse. These computations are time consuming. For instance, on a 3 T scanner with two channels, the whole calibration process can last nearly two minutes: 30 seconds for B1+ mapping, 15 seconds for Δf0 mapping, and between 5 seconds (static RF shimming) and 60 seconds (kT-points) for pulse design itself. This is even worse when the number of channels increases.
“Universal pulses”, introduced in [7], allows calibration-free dynamic RF-shimming: instead of designing a pulse specific to each subject, a pulse robust to inter-subject variability is created once and for all using calibration data of a population of subjects. Universal pulses were successfully implemented in the brain at 7 T, with a variety of sequences and weightings, and different underlying pulse designs.
Universality, however, compromises individual homogeneity. Even if they provide acceptable results for a majority of the subjects, universal pulses fail to provide homogeneous-enough excitation in a significant number of cases.
A compromise solution, suggested in [8], consists in computing different “semi-universal” pulses, tailored to different groups of imaging subjects. More precisely, according to [8], a set of subjects are grouped into a plurality of cohorts according to morphological features—e.g. the size of the head for brain imaging—and a “semi-universal” pulse sequence is designed for each cohort. The same morphological features are then used for choosing the best suited pulse sequence for additional subjects. A drawback of this approach is that the cohorts are formed on an empirical basis, with no guarantee of the relevance of the features used for sorting the imaging subjects.
In order to overcome this drawback, [9] discloses a method—called “Smart Pulse”—wherein a population of subjects is divided into clusters, and one pseudo-universal pulse sequence is designed for each cluster. Then a machine learning algorithm classifies new subjects to assign the best possible pulse to each one of them on the basis of at least a morphological feature. Contrarily to the “semi-universal” approach of [8], the clusters are not defined empirically on the basis of somehow arbitrary morphological features, but in a systematic way using a clustering algorithm.
The invention aims at providing a pulse design method providing better performances than the “Smart Pulse” approach in terms of fidelity to a target excitation pattern without requiring session-specific pulse engineering as e.g. in [4]-[6], but only a much simpler calibration process.
The invention is based on a different approach to describe the session (i.e. MRI subject) dependence of the actual B1+ profile, namely seeing it as the result of a virtual fluctuation of the scattering matrix of the TX (transmit) channels. Denoting by B1,ref+ the B1+ profile measured in one “reference” subject, this approach supposes the existence of a linear transformation, called adjustment transformation, which may be expressed by a complex so-called adjustment matrix L of dimensions Nc×Nc (Nc being the number of transmit channels), such that B1+(r)=LB1,ref+(r) for all locations r in the imaged object. It is important to note that, this model is essentially global since L is supposed to be independent of the position r. In reality, the TX field distribution, which depends in a complex manner on the electromagnetic properties of the sample and on the electromagnetic coupling between the TX channels and the body, does not exactly obey this simple rule. Experimentally, it remains nonetheless possible to estimate the best candidate matrix according to a suitable criterion, e.g. by Moore-Penrose pseudoinverse computation.
It is key to mention here that the computation of the adjustment transformation (matrix) essentially uses the subject-specific B1+ map and so, apparently, does not eliminate the B1+ calibration step. However, the pseudo-inverse computation projects from a space of dimension Nc×M (M denoting the number of spatial positions) to a space of much smaller dimension Nc×Nc (Nc<<M in practice). It follows that this operation tends to be unaffected if only a subsample of the positions is acquired. Therefore, the adjustment matrix can be estimated from a much smaller set of measurement than the one required for full B1+ mapping.
Knowing the session specific adjustment matrix which, as mentioned above, is easily accessible with a rapid calibration technique, one may subsequently compute the so-called standardized resonant TX field distribution, defined as {tilde over (B)}1+(r)=L−1B1+(r).
The inventors have experimentally verified that the co-variance matrix of the standardized TX field distributions measured across several different individuals is substantially reduced as compared to the covariance matrix of the actual physical TX field. In other words, the adjustment transformation allows mapping the TX field distribution in a virtual space wherein the inter-subject variability in the resonant TX field in reduced.
An idea at the basis of the invention is then to design a “universal” pulse sequence using standardized fields for a plurality of subjects instead of the actual physical TX fields. When pTX MRI has to be performed on a subject, a simple calibration method is used for estimating the subject's adjustment transformations; the pulse sequence suitable for this subject is then computed by applying the subject's inverse adjustment transformation to the “universal” sequence. Otherwise stated, the (inverse) adjustment transformation allows “customizing” the universal sequence derived from standardized fields.
An object of the present invention is then a computer-implemented method of designing a pulse sequence for parallel-transmission magnetic resonance imaging, said pulse sequence comprising at least a magnetic field gradient waveform and a set of radio-frequency waveforms, each radio-frequency waveform of said set being associated to a respective transmit channel of a parallel-transmission magnetic resonance imaging apparatus, the method comprising:
a) for each one of a plurality of magnetic resonance imaging subjects, estimating a linear transformation, called adjustment transformation, converting amplitude maps of radio-frequency fields generated within a region of interest comprising a body part of the subject by respective transmit channels of the magnetic resonance imaging apparatus into respective standardized maps, the adjustment transformation being chosen in such a way as to minimize a first cost function representative of an averaged difference between the standardized maps for the subject and respective reference amplitude maps for a reference subject; and
b) determining at least said radio-frequency waveforms in such a way as to minimize a second cost function representative of a discrepancy between subject-specific distributions of flip-angles of nuclear spin and a target distribution, averaged over said plurality of magnetic resonance imaging subjects, the subject-specific distributions corresponding to the flip-angle distributions achieved by applying a magnetic field gradient waveform and a superposition of radio-frequency fields, each of said radio-frequency fields having a temporal profile described by one of said radio-frequency waveforms and a spatial amplitude distribution described by a respective standardized map determined for the subject.
Another object of the invention is a method of performing parallel-transmission magnetic resonance imaging of a subject using a parallel-transmission magnetic resonance imaging apparatus comprising a set of gradient coils, a plurality of transmit channels and a plurality of receive channels, the method comprising the steps of:
i) using the receive channels of the apparatus for performing measurements representative of spatial distributions of radio-frequency fields generated by respective transmit channels within a region of interest comprising a body part of the subject;
ii) using results of said measurements, estimating a linear transformation, called adjustment transformation, converting amplitude maps of radio-frequency fields generated within the region of interest by respective transmit channels of the magnetic resonance imaging apparatus into respective standardized maps, the adjustment transformation being chosen in such a way as to minimize a cost function representative of an averaged difference between the standardized maps for the subject and respective reference amplitude maps for a reference subject;
iii) inverting the adjustment transformation, and computing a set of subject-specific radio-frequency waveforms by applying the inverted adjustment transformation to a set of predetermined reference radio-frequency waveforms; and
iv) applying each subject-specific radio-frequency waveform to a respective transmit channel while applying a magnetic field gradient waveform to the gradient coils, and using the receive channels to receive parallel-transmission magnetic resonance imaging signals.
Yet another object of the invention is a parallel-transmission magnetic resonance imaging apparatus comprising a set of gradient coils, a plurality of transmit channels, a plurality of receive channels and a data processor, characterized in that:
Additional features and advantages of the present invention will become apparent from the subsequent description, taken in conjunction with the accompanying drawings, which show:
A parallel-transmission magnetic resonance imaging apparatus comprising an array of Nc>1 RF coils (or resonators) implementing independently-driven transmit channels. The array is often cylindrical and encloses a region wherein a body part (e.g. the head) of a MRI subject can be introduced.
Let B1,c+(r) (Tesla) denote the spatially dependent transmit RF magnetic field of the cth resonator of the transmit array and γ=42.57×106 Hz/T the gyromagnetic ratio of the proton. The so-called control field components ω1,c=2πγB1,c+ (rad/sN), 1≤c≤Nc, may then be arranged in a vector ω1(r)=(ω1,1, . . . , ω1,N
It is important to recall that the RF field spatial distribution is not only a function of the geometry of the array, but it is also affected by the presence of the body part and therefore depends on the MRI subject. The control field vector for a given realization—and therefore subject—can be measured using several known techniques, see e.g. [10].
For a given realization of the control field ω1, corresponding to a particular MRI subject— designaes the set of positions r where ω1(r) is known. As the control field distribution is typically obtained by MR (magnetic resonance) acquisitions, it is common in practice that is limited in space (no MR signal in air, and existence of regions where the reconstruction of B1+ is not reliable).
The control field distribution (ω1 can be conveniently represented as a Nc×M complex matrix denoted by Ω1(), where M|| is the number of positions contained in . More precisely, Ω1(n)(), with n=1 . . . N, represents the control field for the nth MRI subject. Ω1,ref designates a “reference control field”, defined as the control field distribution of one particular realization (i.e. for a particular MRI subject) taken as a reference.
Measured control fields for N>1 (typically at least ten, and typically several tens) subjects, plus the reference subject, constitute the input data of a pulse design method according to one embodiment of the invention, as illustrated on
In some embodiments of the invention, some or all of the control fields may be computed by performing full electromagnetic simulations taking into account the anatomy of real or virtual subjects.
Let ref denote the region over which the reference control field is defined. Let us denote by L(n) the Nc×Nc complex matrix (adjustment transformation, or matrix) satisfying:
where ∥ ∥2 is the L2 norm. The meaning of equation (1) is that L(n) approximately transforms the control field distribution for the nth subject into the reference control field in the space region wherein both fields are defined, the approximation being the best in the sense of least-square error minimization. Other cost functions may be used as a criterion for defining the “optimal” transformation, but the mean-square error is particularly expedient from a mathematical point of view. Indeed, the solution of equation (1) is simply obtained by right-multiplying Ω1 with the Moore-Penrose pseudo-inverse of Ω1,ref(∩ref), denoted by (Ω1,ref(∩ref))†:
L
(n)=Ω1(n)(∩ref)(Ω1,ref(∩ref)† (2)
The adjustment transformations allow defining the Ω1,ref-standardized control field (or simply “standardized fields”) as:
{tilde over (ω)}1(n)(r)=(L(n))−1ω1(n)(r). (3)
It will be assumed that both the control fields and the standardized control fields are random variables following Gaussian laws defined by their second-order statistics: ω1(r)˜N(μ(r), C(r)) and {tilde over (ω)}1(r)˜N({tilde over (μ)}(r), {tilde over (C)}(r))—the (n) apex are omitted when this is possible without inducing ambiguity. If the number N of subjects (excluding the reference subject) is much larger than Nc (by at least a factor of ten), the second-order statistics of the control fields can be computed as follows (where “*” represents Hermitian conjugation):
Analogous formulas allow computing the second order statistics of the standardized control fields (“standardized control statistics”).
If N is not large enough, the Ledoit-Wolf estimation may be used for the covariance matrix.
The set of standardized control fields—or simply the corresponding standardized control statistics—are then used to perform statistically robust design (SRD) of pulse sequences (the simpler term “pulse” will also be used) in accordance to a target control function f also provided as an input to the design method.
Before describing a specific SRD approach, it is useful to recall some fundamental theoretical results.
A spin excitation pulse sequence (or simply “pulse”) is comprised of a set of time-discretized radiofrequency (RF) waveforms U(t)∈1×N
H(t)=2πγG(t) (6)
For simplicity, the pulse P, which is given by the definition of the RF and MFG waveforms U and H is denoted by:
P=U⊙H. (7)
Neglecting relaxation and off-resonances during the excitation (this supposes that T<<T1,2 and off-resonance
the equation governing the evolution of the magnetization M∈3 (equilibrium magnetization (0 0 M0)t) during the application of the pulse is given by Bloch's equation:
where ((z) and ℑ(z) denote the real and imaginary part of z, respectively):
The mapping (r, t)AP,ω
Given a pulse P and a control field distribution, ω1, one may solve (at least numerically) Bloch's equation and express the magnetization at time T as:
Where Ā(r) is of the form:
The pulse design engineering problem, conversely, consists in setting a condition on the desired control target of the form:
In MRI, as the condition, generally, cannot be met perfectly for all positions simultaneously, this problem is usually solved by minimizing a metric of the form:
where design denote a region of interest (e.g. corresponding to the brain), any point outside this region being ignored in this performance metric.
When the control field ω1(r) is stochastic, then ĀP,ω
Δ(P,θ)=min{Δ≥0;ΠP(Δ,r)≤θ∀r∈design} (14)
where ΠP(Δ, r) denotes the probability that |f(r, eĀ
The optimization problem (14) becomes then:
In practice the computation of Δ(P, θ) is difficult, therefore problem (14) is simplified into a more tractable optimization problem whose optimum is assumed to be close to the optimum of the above problem, see e.g. (14), (15).
One such pulse engineering problem is given by the equation:
As we have assumed that the statistical distribution of the control field ω1(r) is Gaussian with mean value μ(r) and covariance C(r), for all positions r, the term FAP(r)−FAt2 in Eq. 17 is a function of μ(r) and C(r). Thus, an interesting feature of equation (17) is that the optimization does not need full knowledge of the control fields, but only its second-order statistics, as illustrated on
Typically, the desired control target function f represents a target distribution of flip angles of nuclear spins, FAt. Most often, but not always, this target distribution corresponds to a constant flip angle over a region of interest (e.g. a subject's brain).
The flip angle distribution FAP,ω
In other words, the local performance metric
(see Equation 12) here takes the form:
f(r,eĀ
For simplicity, here, neither constraints on the energy of the pulse nor on the MFG slew rate are taken into account here. However these constraints can be added explicitly to the pulse engineering problem by replacing the pulse engineering problem of Eq. (16) with the constrained optimization problem:
Where Γ(P)∈N
It should be understood that equation (16) is only one example of a “relaxed” optimization problem. Different forms of the problem, or even the true SRD optimization problem (16), can be applied to different embodiments of the invention, and in some cases deeper knowledge of the control fields will be required.
Moreover, according to different embodiments of the invention, both the RF waveform U and the gradient waveform H can be optimized, or only the RF waveform, the gradient waveform being predefined.
An essential feature of the invention, distinguishing it from the prior art, comes from the observation that statistically robust pulse design can be carried out using the standardized control fields {tilde over (ω)}1(n)(r) (or their second-order statistics) rather than the “physical” fields ω1(n)(r). In the example of the relaxed form of the SRD optimization problem (16), this is equivalent to replacing
with
The result of such design is called a “standardized” pulse P=U⊙H.
Directly exposing a MRI subject to a standardized pulse would not provide the expected result, i.e. a spin flip angle distribution approximately matching the target. However let us consider, for a subject whose adjustment matrix is “L”, a modified spin excitation pulse P′=U′⊙H such that:
P′=(UL−1)⊙HP/L (20).
Otherwise stated, the RF component of P′ is modified by being right-multiplied by the inverse adjustment matrix for the subject.
It can be observed that:
U′ω
1=(UL−1)(L{tilde over (ω)}1)=U{tilde over (ω)}1 (21)
And therefore:
i.e., that the action of P′ on ω1 equals the action of P on the standardized field {tilde over (ω)}1. The modified pulse, computed from the standardized pulse and the subject-specific (inverse) adjustment matrix, does then provide the expected result, i.e. a spin flip angle distribution approximately matching the target.
In order to perform spin-excitation on a subject it is then necessary to compute an estimator {circumflex over (L)} of its adjustment matrix, and then to apply the inverse of the estimated adjustment matrix to the standardized pulse (rather, to its RF component), to obtain a modified pulse, specific to the subject and fit for the purpose defined during the standardized pulse design phase. This is illustrated on
is equivalent to UL−1.
As discussed above, given that the least-squares problem given by Eq.1 is largely overdetermined, the estimator L can be satisfactorily estimated from a subsampled control field Ω1(F(), i.e:
{circumflex over (L)}=Ω
1(F()∩ref)Ω1,ref(F()∩ref)† (23)
where F is a subsampling operator which removes positions of . Therefore, the computation of {circumflex over (L)} is much more efficient than the computation of a subject-specific optimal pulse.
The advantages provided by the invention will now be discussed with the help of a specific numerical example, illustrated by
MRI data were obtained on a parallel transmit enabled whole body Siemens 7 T system (Siemens Healthineers, Erlangen, Germany) equipped with an SC72 whole body gradient insert (200 mT/m/ms and 70 mT/m maximum gradient slew rate and maximum gradient amplitude). The parallel transmission system consisted of eight transmitters (1 kW peak power per channel). Measurements were made with the 8 Tx-32Rx Nova head coil (Nova Medical, Wilmington, Mass., USA). The data consist of a collection of N=36 B1+ maps measured on different adult subjects (age=40±20 years).
The protocol used to reconstruct the B1+ maps was a multi-slice interferometric turbo-FLASH acquisition ([13]-[15]) 5 mm isotropic resolution, matrix size 40×64×40, TR=20 s, TA=4 min 40 s).
In
P←A and R→L identify the antero-posterior and the right-left directions of the subjects.
As explained above, the adjustment matrices for the subjects may be computed using a reduced set of data. A particularly suitable choice for the subsampling operator F of equation (23) is the operator that selects a subset of the ensemble of acquired slices (Ns denoting the number of acquired slices). For 1≤m≤Ns, Fn denotes the operation consisting in retaining m evenly distributed slices across the optimization region (in this example, the volume of the brain) and Lm=LF
On
The difference in magnitude between the two adjustment matrices, |L3−L40| is shown in
Universal kT-point pulses ([6]) for the Nova TX array where designed by following the SRD approach described above, optimized to create uniform 10° flip angle excitation across the brain. For that purpose, the design region, design, was defined as:
where b(n) denotes the brain region for subject #n and (⋅) is the characteristic function of b(n).
For the design, the spins were assumed to be on-resonant (ω0=0) everywhere across the head. The optimization was made on the flip angle (measuring by how much a magnetization initially along z is tipped from the z axis) distribution FAP,{tilde over (ω)}
For simplicity, here, no constraint on the energy of the pulse nor on the MFG slew rate was taken into account. However, once the solution of the problem is determined, by possibly increasing the sub-pulse and MFG blip duration, the solution can be adapted to satisfy all hardware (peak RF power, average RF power or MFG slew rate limitations) or safety (specific absorption rate) constraints. In this numerical application, the number of kT-points was set to 5, and their position in the k-space determined by the SRD approach described above.
Statistical robust solutions were computed numerically with the natural (μ, C) and the reduced ({tilde over (μ)}, {tilde over (C)}) control field statistics as input statistics using Equation (16) (“relaxed” SRD). The solution computed using the second-order statistics (μ, C) of the natural fields will be called in the following “Universal Pulse” UP, as it corresponds to the method disclosed in [7]. The solution computed using the second-order statistics ({tilde over (μ)}, {tilde over (C)}) of the standardized fields will be called in the following “Standardized Universal Pulses” SUP.
For every subject, subject-tailored (ST) pulses were also computed, using the same parameterization as for the UP and SUP. The cost function to minimize was:
Where we recall that ω1(n) denotes the subject-specific control field distribution for subject #n.
The subject-tailored solution obtained from m slices is denoted by PST
The performance analysis of the UP, SUP consisted in simulating for every subject (36 simulations) the flip angle distribution and computing the Normalized Root Mean Square (NRMS) deviation of the latter from the target, referred below to as the flip angle NRMS control error (FA-NRMSE). Here, for every realization of the control field (i.e., every subject), 5 pulses were tested the four pulses: i) PUP, ii) PSUP/L40, iii) PSUP/L3, iv) PST, and v) PST
The result of the FA-NRMSE analysis is presented in
In conclusion, the inventive method (SUP pulses) provides better uniformity than the Universal Pulse (UP) approach, while requiring a rather simple calibration (e.g. only using three-slice MRI) for determining the subject-specific adjustment transformations. Subject-tailored (ST) pulses achieve even better uniformity, but they require a much heavier calibration (trying to reduce the complexity of the calibration step, as it was done in the ST3 example, yields inacceptable results).
The calibration step may be further simplified by deriving the inverse adjustment transformation for the user from measurements other than MR acquisitions. For instance, the measured noise covariance matrix for a plurality of receive channels of the MRI scanner is influenced by the subject body part in the scanner. A machine-learning algorithm may then be used to estimate the inverse adjustment matrix from noise measurements. Several different kind of measurements (e.g. MR and noise) may also be combined.
Biometric and/or anagraphical data of the user (e.g. size of the head, sex, age . . . ) may also be taken into account, combined with measurements, for estimating the adjustment transformations.
The computer also drives the gradient coils GC to generate gradient waveforms. The (inhomogeneous) RF field B1+ is generated by the RF coil elements; the ensemble formed by the RF coil elements is sometimes called a (RF) coil or array.
According to the invention, the complex envelopes of a “standardized” pulse sequences, comprising one RF waveform for each transmission channel of the scanner and gradient waveforms is stored in a memory device to which computer CP has access. Moreover, computer CP is programmed to drive the scanner to perform measurements representative of spatial distributions of radio-frequency fields generated by the RF array; use the results of said measurements for estimating a subject-specific adjustment matrix, apply said adjustment matrix (or, rather, its inverse) to the standardized pulse to compute a subject-specific modified pulse and drive the RF and gradient coils to play the waveforms of the modified pulse.
Number | Date | Country | Kind |
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19306589.3 | Dec 2019 | EP | regional |