Methods and Compositions for Preventing or Treating Heart Disease

Information

  • Patent Application
  • 20210052630
  • Publication Number
    20210052630
  • Date Filed
    August 20, 2020
    4 years ago
  • Date Published
    February 25, 2021
    3 years ago
Abstract
Application of transfer RNA Molecules and their derived fragments for prevention or treatment of heart disease. The present invention provides a method of preventing or treating a subject suffering from heart diseases comprising administration of transfer RNA molecules and fragments derived from transfer RNA molecules or its functional variants or homologous to the subject, wherein the RNA molecules isolated from or derived from a plant of the genus Panax. The present invention also provides a pharmaceutical composition for the prevention or treatment of heart diseases comprising said effective amount of RNA molecule and a pharmaceutically tolerable vector, virus or excipient. The present invention provides a method for the prevention or treatment of a subject suffering from a heart disease. It is found that transfer RNA molecules from ginseng are particularly effective in the treatment of heart diseases, and also have a restorative effect on the myocardial cytoskeleton after ischemia-reperfusion injury.
Description
CROSS-REFERENCE TO RELATED APPLICATION

This application claims priority to, and the benefit of, Chinese Patent Application No. 20190784150.9 filed on Aug. 23, 2019. The entire contents of the foregoing application are hereby incorporated by reference for all purposes.


REFERENCE TO SEQUENCE LISTING

This application contains a sequence listing which has been submitted electronically in ASCII format and is hereby incorporated by reference in its entirety. Said ASCII copy, created on Oct. 13, 2020, is named “M006_091_NPRUS_Sequence_list_revised.txt” and is 104468 bytes in size.


TECHNICAL FIELD

The present invention belongs to the field of biomedicine, relating to a method of preventing or treating a subject suffering from heart disease comprising administration of transfer RNA molecules isolated from or derived from a plant of the genus Panax to the subject. The invention further relates to a pharmaceutical composition comprising a nucleic acid for the treatment and use thereof.


BACKGROUND OF THE INVENTION

Coronary heart disease (CHD) has become the top leading cause of mortality and morbidity worldwide. Traditional Chinese medicines (TCMs) have been widely applied for preventing or treating CHD whereas lots of research efforts have been contributed to investigate the effectiveness of isolated small molecules such as saponins, terpenoids, flavonoids or the like in treating CHD. Some ginsenosides have been found to have effect in protecting cardiomyocytes exposed to hypoxia/reoxygenation in vitro. However, most of them are often toxic to human. Also, macromolecules such as DNAs, RNAs, and proteins are generally considered unstable and have poor effect in living human body and therefore have not been widely considered as suitable in said treatment.


Currently, some studies show that non-coding RNAs (ncRNAs) such as microRNAs have diverse regulatory roles through targeting different aspects of RNA transcription or post-transcription process in nearly all eukaryotic organisms. Lin Zhang et al. (Cell research 2012, 22, 107-126) suggested that exogenous plant microRNAs in foods could be taken up by the mammalian gastrointestinal (GI) tract and entering into the circulation to various organs, where they are capable of regulating the expression of mammalian genes. Goodarzi, H. et al. (Cell 2015, 161 (4), 790-802) revealed that endogenous tRNA derived fragments could suppress the stability of multiple oncogenic transcripts in breast cancer cells through binding and antagonizing activities of pathogenesis-related RNA-binding proteins. Nevertheless, there still remains a need to derive effective molecules from various sources such as plants for treatments.



Panax ginseng C. A. Mey, a species from the family of Araliaceae, is considered to be the most precious herbs distributed mountainous regions of China and Korea. The roots of P. ginseng have been a famous traditional Chinese medicine used worldwide for thousands of years to be a tonic to invigorate weak bodies. In addition, the main component of P. ginseng such as ginsenosides and polysaccharides had been proved to show significant effects on cardioprotection. However, the dosage of these components is massive, which may cause toxicity to human bodies. Therefore, there remains a continuing need for new and improved treatments for patients with CHD and/or associated with different complications.


SUMMARY OF THE INVENTION

Therefore, in view of the inadequacy of existing technology, the purpose of the present invention is to provide transfer RNA molecules isolated from or derived from plant of genus Panax in the preparation of drugs for the prevention or treatment of heart diseases. Specifically, the purpose of the present invention is to identify or discover the key role of transfer RNA molecules isolated from or derived from plant of genus Panax in treatment of myocardial ischemia reperfusion, myocardial infarction, coronary heart disease, myocardial fibrosis and other cardiac diseases, and further application of diagnosis and treatment of these heart diseases.


The purpose of the invention is realized through the following technical scheme.


In a first aspect, the invention provides transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous in the preparation of drugs for the prevention or treatment of a subject suffering from heart diseases, wherein said RNA molecule isolated from or derived from a plant of the genus Panax.


In an embodiment, the plant of the genus Panax comprises Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn. Preferably, said plant of the genus Panax is Panax ginseng C. A. Mey.


Preferably, the transfer RNA molecule comprises a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522.


In an alternative embodiment, the fragments derived from transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue therefore, and a complementary antisense sequence.


Preferably, the fragments derived from transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue therefore, and a complementary antisense sequence.


Wherein, said complementary antisense sequences of nucleotide sequences shown in any of SEQ ID NO:1 to SEQ ID NO:232 are showed in any of SEQ ID NO:233 to SEQ ID NO:464.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous contains a 2 mer of 3′ overhang.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous contains a 3′ cholesterol conjugation.


Preferably, the double-stranded RNA molecule comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


In an embodiment, said heart diseases are selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.


In an embodiment, the RNA molecule of the invention is a non-coding molecule has a sequence length of from about 50 to 200 nucleotides or 10 to 30 base pairs.


In another aspect, the invention provides a pharmaceutical composition for preventing or treating heart diseases comprising an effective amount of transfer RNA molecule, fragments derived from transfer RNA molecules or its functional variants or homologous and a pharmaceutically tolerable vector, virus or excipient, wherein the RNA molecule is isolated or derived from a plant of the genus Panax.


In an embodiment, the pharmaceutically tolerable vector selected from one or more of the gene delivery vectors, chitosan, cholesterol, liposomes and nanoparticles.


Preferably, transfer RNA molecules, fragments derived from transfer RNA molecule or its functional variants or homologous are provided as composition containing a gene delivery vector.


Preferably, the pharmaceutical composition is provided by intravenous, intramuscular, intracoronary or direct myocardial injection.


In an embodiment, the pharmaceutical composition comprising the RNA molecule isolated or derived from the plant of the genus Panax comprises Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn. Preferably, said plant of the genus Panax is Panax ginseng C. A. Mey.


In an embodiment, wherein the transfer RNA molecule comprises a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522.


In an alternative embodiment, the fragments derived from transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue therefore, and a complementary antisense sequence.


Preferably, the fragments derived from transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue therefore, and a complementary antisense sequence.


Wherein, said complementary antisense sequences of nucleotide sequences shown in any of SEQ ID NO:1 to SEQ ID NO:232 are showed in any of SEQ ID NO:233 to SEQ ID NO:464.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous comprises a 2 mer of 3′ overhang.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous comprises a 3′ cholesterol conjugation.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


In an embodiment, said heart diseases are selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.


In an embodiment, the RNA molecule of the invention is a non-coding molecule has a sequence length of from about 50 to 200 nucleotides or 10 to 30 base pairs.


In a further aspect, the invention provides a method of preventing or treating a subject suffering from heart diseases, said method comprises the step of administering of an effective amount of transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous thereof.


In an embodiment, said method comprising a step of contacting said cardiomyocytes with an effective amount of transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous which are isolated or derived from a plant of the genus Panax.


In an embodiment, said plant of the genus Panax comprises Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn. Preferably, said plant of the genus Panax is Panax ginseng C. A. Mey.


Preferably, the transfer RNA molecule comprises a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522.


In an alternative embodiment, the fragments derived from transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue therefore, and a complementary antisense sequence.


Preferably, the fragments derived from transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue therefore, and a complementary antisense sequence.


Wherein, said complementary antisense sequences of nucleotide sequences shown in any of SEQ ID NO:1 to SEQ ID NO:232 are showed in any of SEQ ID NO:233 to SEQ ID NO:464.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous contains a 2 mer of 3′ overhang.


Preferably, the transfer RNA molecules and fragments derived from transfer RNA or its functional variants or homologous contains a 3′ cholesterol conjugation.


Preferably, the double-stranded RNA molecule comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


In an embodiment, said heart diseases are selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.


In an embodiment, the RNA molecule of the invention is a non-coding molecule has a sequence length of from about 50 to 200 nucleotides or 10 to 30 base pairs.


Still further, the invention provides a recombinant vector comprising the double-stranded RNA molecule, wherein the double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue therefore, and a complementary antisense sequence.


Preferably, the double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue therefore, and a complementary antisense sequence.


Preferably, the double-stranded RNA molecule comprises a 2 mer of 3′ overhang.


Preferably, the double-stranded RNA molecule comprises a 3′ cholesterol conjugation.


Preferably, the double-stranded RNA molecule comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


Further, the invention provides the application in the preparation of drugs for the prevention or treatment of heart disease, wherein the drug comprises the transfer RNA molecule, fragments derived from transfer RNA molecule or its functional variant or homologous, the pharmaceutical composition and the recombinant vector.


The invention provides a novel and effective approach for treating heart diseases by administration of RNA molecules that are isolated or derived from a plant of the genus Panax, or in particular double-stranded RNA molecules comprising a sequence selected from SEQ ID NO: 1 to 232. Administration of said RNA molecules is also suitable for promoting the growth and proliferation of cardiomyocytes.


The inventors have found that non-coding RNA molecules isolated from a plant of the genus Panax, particularly transfer RNA molecules, and RNA molecules derived from Panax are particularly useful in treatment of heart diseases. The RNA molecules with a sequence length of about 10 to 200 nucleotides are highly effective at promoting the growth and proliferation of cardiomyocytes. Besides, said RNA molecules have restorative effects on the myocardial cytoskeleton after ischemia-reperfusion injury.


Those skilled in the art will appreciate that the invention described herein is susceptible to variations and modifications other than those specifically described. The invention includes all such variations and modifications. The invention also includes all steps and features referred to or indicated in the specification, individually or collectively, and any and all combinations of the steps or features.


Other features and aspects of the invention will become apparent by consideration of the following detailed description and accompanying figures.





BRIEF DESCRIPTION OF THE DRAWINGS

The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.


The details about the implementation plan of the invention are elaborated in combination with the attached figures.



FIG. 1 shows gel electrophoresis profiles of RNA molecules from Panax ginseng C. A. Mey, including low range ssRNA Ladder (denoted as “L”), small RNA molecules (denoted as “S”), transfer RNAs (denoted as “T”), and individual transfer RNA including tRNAGly(GCC), tRNAHis(GUG), tRNAMet(CAU) (denoted as “Gly, His, Met” respectively), in accordance with an example embodiment.



FIG. 2 is a bar chart showing read length distribution of transfer RNAs from Panax ginseng C. A. Mey in accordance with an example embodiment.



FIG. 3A is a bar chart showing the cardiomyocytes proliferation of 300 nM RNA molecules, tRNAGly(GCC), tRNAHis(GUG), tRNAMet(CAU) and tRNALeu(CAA) from Panax ginseng C. A. Mey on H9C2 cell line exposed to hypoxia injury, compared to a control group, a hypoxia group in accordance with an example embodiment (mean±SD n=2; ****, p<0.0001 vs. vehicle hypoxia; ####, p<0.0001 vs. vehicle control).



FIG. 3B is a bar chart showing the cardiomyocytes proliferation of 50 nM RNA molecules tRNAGly(GCC), tRNAHis(GUG), tRNAMet(CAU) and tRNALeu(CAA) from Panax ginseng C. A. Mey on H9C2 cell line exposed to hypoxia/reoxygenation (H/R) injury, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; *, p<0.05 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 4A is a bar chart showing the cell viability of H9C2 cells after treatment with a RNA molecule tRNAHis(GUG) at different concentrations, i.e. 100 nM, 50 nM, 25 nM, and 12.5 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; **, p<0.01, ***, p<0.001, ****, p<0.001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 4B is a bar chart showing the cell viability of H9C2 cells after treatment with a RNA molecule tRNAGly(GCC) at different concentrations, i.e. 100 nM, 50 nM, 25 nM, and 12.5 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; *, p<0.05, **, p<0.01, ****, p<0.001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 4C is a bar chart showing the cell viability of H9C2 cells after treatment with Ginsenosides Rg1 at different concentrations, i.e. 100 μM, 25 μM, 6.25 μM, and 1.56 μM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; ****, p<0.0001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 5A is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with different RNA molecules derived from Panax ginseng C. A. Mey with a sequence length of 22 bp at a dose of 300 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=6; *, p<0.05 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 5B is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with different RNA molecules derived from Panax ginseng C. A. Mey with a sequence length of 19 bp at a dose of 300 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=6; *, p<0.05 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 6A is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC50 at different concentrations, i.e. 900 nM, 300 nM, 30 nM, 3 nM and 0.3 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; *, p<0.05, ****, p<0.0001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 6B is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC83 at different concentrations, i.e. 900 nM, 300 nM, 30 nM, 3 nM and 0.3 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; **, p<0.01, ****, p<0.0001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 7A is a bar chart showing the mitochondrial viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC50 at different concentrations, i.e. 300 nM, 100 nM, 30 nM, and 3 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; *, p<0.05 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 7B is a bar chart showing the mitochondrial viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC83 at different concentrations, i.e. 300 nM, 100 nM, 30 nM, and 3 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; ***, p<0.001, vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 8A is a cytoskeleton image showing protective effects on cytoskeleton destruction of H9C2 cells caused by hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC50 at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM, 3 nM, and 0.3 nM compared to a control group, a H/R group in accordance with an example embodiment.



FIG. 8B is a cytoskeleton image showing protective effects on cytoskeleton destruction of H9C2 cells caused by hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC83 at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM, 3 nM, and 0.3 nM compared to a control group, a H/R group in accordance with an example embodiment.



FIG. 9A is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with cholesterol-conjugated RNA molecule HC50 at different concentrations, i.e. 900 nM, 300 nM, 30 nM, 3 nM and 0.3 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; *, p<0.05, ****, p<0.0001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 9B is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with cholesterol-conjugated RNA molecule HC83 at different concentrations, i.e. 900 nM, 300 nM, 30 nM, 3 nM and 0.3 nM, compared to a control group, a H/R group in accordance with an example embodiment (mean±SD n=3; *, p<0.05, ***, p<0.001, ****, p<0.0001 vs. vehicle H/R; ####, p<0.0001 vs. vehicle control).



FIG. 10A is a cytoskeleton image showing protective effects on cytoskeleton destruction of H9C2 cells caused by hypoxia/reoxygenation (H/R) injury after treatment with cholesterol-conjugated RNA molecule HC50 at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM and 3 nM compared to a control group, a H/R group in accordance with an example embodiment.



FIG. 10B is a cytoskeleton image showing protective effects on cytoskeleton destruction of H9C2 cells caused by hypoxia/reoxygenation (H/R) injury after treatment with cholesterol-conjugated RNA molecule HC83 at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM and 3 nM compared to a control group, a H/R group in accordance with an example embodiment.



FIG. 11A is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC50 at different concentrations, i.e. 300 nM, 100 nM and 30 nM, by transfected with DharmaFECT4 transfection reagent, compared to a control group, a H/R along with DharmaFECT4 treated group in accordance with an example embodiment (mean±SD n=3; **, p<0.01, vs. vehicle H/R+ DharmaFECT4; ####, p<0.0001 vs. vehicle control).



FIG. 11B is a bar chart showing the cell viability of H9C2 cells exposed to hypoxia/reoxygenation (H/R) injury after treatment with RNA molecule HC83 at different concentrations, i.e. 300 nM, 100 nM and 30 nM, by transfected with DharmaFECT4 transfection reagent, compared to a control group, a H/R along with DharmaFECT4 treated group in accordance with an example embodiment (mean±SD n=3; *, p<0.05, vs. vehicle H/R+ DharmaFECT4; ####, p<0.0001 vs. vehicle control).





DETAILED DESCRIPTION OF THE EMBODIMENTS

Unless otherwise defined, all technical terms used herein have the same meaning as commonly understood by one skilled in the art to which the invention belongs.


As used herein, “comprising” means including the following elements but not excluding others. “Essentially consisting of” means that the material consists of the respective element along with usually and unavoidable impurities such as side products and components usually resulting from the respective preparation or method for obtaining the material such as traces of further components or solvents. “Consisting of” means that the material solely consists of, i.e. is formed by the respective element. As used herein, the forms “a,” “an,” and “the,” are intended to include the singular and plural forms unless the context clearly indicates otherwise.


The present invention in the first aspect provides a method of preventing or treating a subject suffering from heart disease comprising administration of transfer RNA molecules and fragments derived from transfer RNA molecules or its functional variants or homologous to the subject, wherein the RNA molecules isolated from or derived from a plant of the genus Panax. The RNA molecule administered according to the present invention may be naturally present, modified or artificially synthesized according to the sequences disclosed in the present invention, and preferably the RNA molecule is isolated or derived from a plant of the genus Panax. The RNA molecule of the present invention is not provided in the form of boiled extract obtained from the plant such as decoction, as it would be appreciated that RNA molecule is susceptible to spontaneous degradation at elevated temperature, alkaline pH, and the presence of nucleases or divalent metal ions.


The RNA molecule of the present invention has a sequence length of from about 10 to 200 nucleotides which can be regarded as a small RNA molecule. Preferably, the RNA molecule has a sequence length of from about 50 to about 200 nucleotides, from about 60 to about 150 nucleotides, in particular from about 70 to about 100 nucleotides.


The RNA molecule of the present invention comprises a sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof. The term “functional variant” of the RNA molecule refers to a molecule substantially similar to said RNA molecule with one or more sequence alterations that do not affect the biological activity or function of the RNA molecule. The alterations in sequence that do not affect the functional properties of the resultant RNA molecules are well known in the art. For example, nucleotide changes which result in alteration of the -5′-terminal and -3′-terminal portions of the molecules would not be expected to alter the activity of the polynucleotides. In an embodiment, the RNA molecule of the present invention comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


In particular, the functional variant of the RNA molecule has at least 80%, 81%, 82%, 83%, 84%, 85%, 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% overall sequence identity to the non-variant RNA molecule according to the present invention.


The term “homologue” used herein refers to nucleotides having a sequence identity of at least 50%, at least 60%, at least 70%, at least 80%, at least 90% or at least 95% to the RNA molecules according to the present invention. In an embodiment, the homologue of the RNA molecule has at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% overall sequence identity to the RNA molecule.


In an embodiment, the RNA molecule is a non-coding molecule preferably selected from a transfer RNA molecule, a micro RNA molecule or a siRNA molecule; and more preferably is a transfer RNA molecule. tRNA molecules are highly conserved RNAs with function in various cellular processes such as reverse transcription, porphyrin biosynthesis or the like. In a particular embodiment, the RNA molecule of the invention comprises a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522 or a functional variant or homologue thereof; or the RNA molecule comprises SEQ ID NO: 465 to SEQ ID NO: 468 or a functional variant or homologue thereof; or the RNA molecule consists of a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522 or SEQ ID NO: 465 to SEQ ID NO: 468 or a functional variant or homologue thereof.


In an alternative embodiment where the RNA molecule is a small RNA molecule having a sequence length of from about 10 to about 30 base pairs, from about 15 to about 25 base pairs, from about 19 to about 22 base pairs, 19 base pairs or 22 base pairs. The RNA molecule comprises a sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof, in particular SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue thereof; or consists of a sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232, in particular SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue thereof.


Preferably, the RNA molecule is a double-stranded RNA molecule having a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof, and a complementary antisense sequence.


The antisense sequence is complementary to the sense sequence and therefore the antisense sequence is preferably selected from SEQ ID NO: 233 to 464 or functional variant or homologue thereof. In a particular embodiment, the double-stranded RNA molecule of the present invention has a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue thereof, and a complementary antisense sequence selected from SEQ ID NO: 233 to SEQ ID NO: 272 or a functional variant or homologue thereof. The inventors unexpectedly found that the double-stranded RNA molecules of the present invention are particularly useful in treatment of heart diseases as described in detail below.


The RNA molecule of the present invention is preferably isolated or derived from the plant of the genus Panax. The plant of the genus Panax includes but is not limited to Panax ginseng C. A. Mey, Panax quinquefolius Linn., Panax notoginseng (Burkill) F. H. Chen, Panax pseudoginseng Wall, Panax zingiberensis C. Y. Wu et K. M. Feng. The plant of the genus Panax may be the source of Ginsenosides Rg1. In an embodiment, the RNA molecule is isolated or derived from Panax ginseng C. A. Mey.


In more detail, the RNA molecule of the present invention is preferably isolated or derived from the different plant organs of the genus Panax. The plant organs of the genus Panax includes but is not limited to leaves, roots, and fruits. In an embodiment, the RNA molecule is isolated or derived from the roots of Panax ginseng C. A. Mey.


In more detail, the preferred sequences of the RNA molecules of the present invention are listed in Tables 1 and 2 below. In an embodiment, RNA molecules of SEQ ID NO: 465 to SEQ ID NO: 522 as shown in Table 1 are isolated from a plant of genus Panax in particular from Panax ginseng C. A. Mey. These sequences are obtained by extraction, RNA isolation and purification of the plant. The inventors determined these RNA molecules are associated with chloroplasts, cytoplast and mitochondria. One possible approach to obtain the RNA molecules from a particular plant Panax ginseng C. A. Mey is illustrated in Example 1. It would be appreciated that other suitable methods for obtaining the isolated and purified RNA molecules of the present invention according to the disclosure herein can be applied, and the methods can be subject to appropriate modification to obtain an improved yield of the RNA molecules, without departing from the scope of the present invention.









TABLE 1







RNA molecules in particular tRNAs isolated from Panaxginseng C. A. Mey


according to the present invention.










SEQ ID


Length


NO.
tRNA(s)
Sequence (5′ to 3′)
(mer)





465
tRNAHis(GUG)
GCGGAUGUAGCCAAGUGGAUCAAGGCAGUGGAUUGUGAA
77




UCCACCAUGCGCGGGUUCAAUUCCCGUCGUUCGCCCCA






466
tRNAGly(GCC)_1
GCGGAUAUAGUCGAAUGGUAAAAUUUCUCUUUGCCAAGGA
74




GAAGACGCGGGUUCGAUUCCCGCUAUCCGCCCCA






467
tRNALeu(CAA)
GCCUUGGUGGUGAAAUGGUAGACACGCGAGACUCAAAAU
84




CUCGUGCUAAAGAGCGUGGAGGUUCGAGUCCUCUUCAAG





GCACCA






468
tRNAMet(CAU)_1
CGCGGAGUAGAGCAGUUUGGUAGCUCGCAAGGCUCAUAA
77




CCUUGAGGUCACGGGUUCAAAUCCUGUCUCCGCAACCA






469
tRNAAsp(GUC)
GGGAUUGUAGUUCAAUCGGUCAGAGCACCGCCCUGUCAA
77




GGCGGAAGCUGCGGGUUCGAGCCCCGUCAGUCCCGCCA






470
tRNASer(GCU)_1
GGAGAGAUGGCUGAGUGGACUAAAGCGGCGGAUUGCUAA
91




UCCGCUGUACGAGUUAUUCGUACCGAGGGUUCGAAUCCC





UCUCUUUCCGCCA






471
tRNAGln(UUG)_1
UGGGGCGUGGCCAAGUGGUAAGGCAACGGGUUUUGGUCC
75




CGCUAUUCGGAGGUUCGAAUCCUUCCGUCCCAGCCA






472
tRNAGlu(UUC)_1
GCCCCCAUCGUCUAGUGGUUCAGGACAUCUCUCUUUCAA
76




GGAGGCAGCGGGGAUUCGACUUCCCCUGGGGGUACCA






473
tRNAAsn(GUU)
UCCUCAGUAGCUCAGUGGUAGAGCGGUCGGCUGUUAACU
75




GACUGGUCGUAGGUUCGAAUCCUACCUGGGGAGCCA






474
tRNAPro(UGG)_1
AGGGAUGUAGCGCAGCUUGGUAGCGCUUUUGUUUUGGGU
74




ACAAAAUGUCACGGGUUCAAAUCCUGUCAUCCCUACCA






475
tRNAGln(CUG)
GGUUCCAUGGUCUAGUGGUCAGGACAUUGGACUCUGAAU
75




CCAGUAACCCGAGUUCAGGUCUC GGUGGAACCUCCA






476
tRNAGlu(UUG)
UCCGUUGUCGUCCAGCGGUUAGGAUAUCUGGCUUUCACC
75




CAGGAGACCCGGGUUCGUUUCCCGGCAACGGAACCA






477
tRNACys(GCA)
GGCUAGGUAACAUAAUGGAAAUGUAUUGGACUGCAAAUCC
74




UGGAAUGACGGUUCGACCCCGUCCUUGGCCUCCA






478
tRNAMet(CAU)
AGCGGGGUAGAGUAAUGGUCAACUCAUCAGUCUCAUUAU
76




CUGAAGACUACAGGUUCGAAUCCUGUCCCCGCCUCCA






479
tRNAPro(UGG)_2
CGAGGUGUAGCGCAGUCUGGUCAGCGCAUCUGUUUUGGG
78




UACAGAGGGCCAUAGGUUCGAAUCCUGUCACCUUGACCA






480
tRNAGly(GCC)_2
GCACCAGUGGUCUAGUGGUAGAAUAGUACCCUGCCACGG
74




UACAGACCCGGGUUCGUUUCCCGGCUGGUGCACCA






481
tRNAAsp(GUC)
GUCGUUGUAGUAUAGUGGUAAGUAUUCCCGCCUGUCACG
75




CGGGUGACCCGGGUUCGAUCCCCGGCAACGGCGCCA






482
tRNATry(GCA)
CCGACCUUAGCUCAGUUGGUAGAGCGGAGGACUGUAGUG
89




UGCUCGUAGCUAUCCUUAGGUCGCUGGUUCGAAUCCGGC





UGGUCGGACCA






483
tRNAAla(AGC)
GGGGAUGUAGCUCAGAUGGUAGAGCGCUCGCUUAGCAUG
76




CGAGAGGUACGGGGAUCGAUACCCCGCAUCUCCACCA






484
tRNAGlu(CUC)
UCCGUUGUAGUCUAGUUGGUCAGGAUACUCGGCUCUCAC
76




CCGAGAGACCCGGGUUCAAGUCCCGGCAACGGAACCA






485
tRNAGlu(UUC)_2
GUCCCUUUCGUCCAGUGGUUAGGACAUCGUCUUUUCAUG
75




UCGAAGACACGGGUUCGAUUCCCGUAAGGGGUACCA






486
tRNAArg(CCU)
GCGCCUGUAGCUCAGUGGAUAGAGCGUCUGUUUCCUAAG
76




CAGAAAGUCGUAGGUUCGACCCCUACCUGGCGCGCCA






487
tRNAVal(AAC)
GGUUUCGUGGUGUAGUUGGUUAUCACGUCAGCCUAACAC
77




ACUGAAGGUCUCCGGUUCGAACCCGGGCGAAGCCACCA






488
tRNAVal(CAC)
GUCUGGGUGGUGUAGUCGGUUAUCAUGCUAGUCUCACAC
77




ACUAGAGGUCCCCGGUUCGAACCCGGGCUCAGACACCA






489
tRNASer(UGA)
GGAUGGAUGUCUGAGCGGUUGGAAGAGUCGGUCUUGAAA
90




ACCGAAGUAUUGAUAGGAAUACCGGGGGUUCGAAUCCCU





CUCCAUCCGCCA






490
tRNAPhe(GAA)_1
GCGGGGAUAGCUCAGUUGGGAGAGUGUCAGACUGAAGAU
76




CUAAAGGUCACGUGUUUGAUCCACGUUCACCGCACCA






491
tRNAHis(CAU)
GCAUCCAUGGCUGAAUGGUUAAAGCGCCCAACUCAUAAUU
77




GGCGAAUUCGUAGGUUCAAUUCCUACUGGAUGCACCA






492
tRNALys(UUU)_1
GGGUUGCUAACUCAACGGUAGAGUACUCGGCUUUUAACC
75




GACUAGUUCCGGGUUCGAAUCCCGGGCAACCCACCA






493
tRNASer(UGA)
GGAGAGAUGGCUGAGUGGUUGAUAGCUCCGGUCUUGAAA
95




ACCGGCAUAGUUUUAACAAAGAACUAUCGAGGGUUCGAAU





CCCUCUCUCUCCUCCA






494
tRNASer(GGA)
AGGAGAGAUGGCCGAGUGGUUGAAGGCGUAGCAUUGGAA
91




CUGCUAUGUAGGCUUUUGUUUACCGAGGGUUCGAAUCCC





UCUCUUUCCGCCA






495
tRNAGly(UCC)
GCGGGUAUAGUUUAGUGGUAAAACCCUAGCCUUCCAAGC
74




UAACGAUGCGGGUUCGAUUCCCGCUACCCGCUCCA






496
tRNAArg(UCU)
GCGUCCAUUGUCUAAUGGAUAGGACAGAGGUCUUCUAAA
75




CCUUUGGUAUAGGUUCAAAUCCUAUUGGACGCACCA






497
tRNAArg(ACG)
GGGCCUGUAGCUCAGAGGAUUAGAGCACGUGGCUACGAA
77




CCACGGUGUCGGGGGUUCGAAUCCCUCCUCGCCCACCA






498
tRNACys(GCA)
GGCGAUAUGGCCGAGUGGUAAGGCGGGGGACUGCAAAUC
75




CUUUUUUCCCCAGUUCAAAUCCGGGUGUCGCCUCCA






499
tRNATyr(GUA)_1
GGGUCGAUGCCCGAGCGGUUAAUGGGGACGGACUGUAAA
87




UUCGUUGGCAAUAUGUCUACGCUGGUUCAAAUCCAGCUC





GGCCCACCA






500
tRNAThr(GGU)
GCCCUUUUAACUCAGCGGUAGAGUAACGCCAUGGUAAGG
75




CGUAAGUCAUCGGUUCAAAUCCGAUAAGGGGCUCCA






501
tRNAThr(UGU)
GCCUGCUUAGCUCAGAGGUUAGAGCAUCGCAUUUGUAAU
76




GCGAUGGUCAUCGGUUCGAUUCCGAUAGCCGGCUCCA






502
tRNAMet(CAU)_2
ACCUACUUAACUCAGUGGUUAGAGUAUUGCUUUCAUACGG
76




CGGGAGUCAUUGGUUCAAAUCCAAUAGUAGGUACCA






503
tRNALeu(UAA)
GGGGAUAUGGCGGAAUUGGUAGACGCUACGGACUUAAAA
87




UCCGUCGACUUUAAAAUCGUGAGGGUUCAAGUCCCUCUA





UCCCCACCA






504
tRNALeu(UAG)
GCCGCUAUGGUGAAAUCGGUAGACACGCUGCUCUUAGGA
83




AGCAGUGCUAGAGCAUCUCGGUUCGAGUCCGAGUGGCGG





CACCA






505
tRNAPhe(GAA)_2
GUCGGGAUAGCUCAGCUGGUAGAGCAGAGGACUGAAAAU
76




CCUCGUGUCACCAGUUCAAAUCUGGUUCCUGGCACCA






506
tRNAVal(UAC)
AGGGCUAUAGCUCAGUUAGGUAGAGCACCUCGUUUACAC
77




CGAGAAGGUCUACGGUCCGAGUCCGUAUAGCCCUACCA






507
tRNAVal(GAC)
AGGGAUAUAACUCAGCGGUAGAGUGUCACCUUGACGUGG
75




UGGAAGUCAUCAGUUCGAGCCUGAUUAUCCCUACCA






508
tRNATrp(CCA)
GCGCUCUUAGUUCAGUUCGGUAGAACGUGGGUCUCCAAA
77




ACCCAAUGUCGUAGGUUCAAAUCCUACAGAGCGUGCCA






509
tRNAIle(GAU)
GGGCUAUUAGCUCAGUGGUAGAGCGCGCCCCUGAUAAGG
77




GCGAGGUCUCUGGUUCAAGUCCAGGAUGGCCCACCA






510
tRNAAla(UGC)
GGGGAUAUAGCUCAGUUGGUAGAGCUCCGCUCUUGCAAG
76




GCGGAUGUCAGCGGUUCGAGUCCGCUUAUCUCCACCA






511
tRNALys(UUU)_2
GGGUGUAUAGCUCAGUUGGUAGAGCAUUGGGCUUUUAAC
76




CUAAUGGUCGCAGGUUCAAGUCCUGCUAUACCCACCA






512
tRNALys(CUU)
CACCCUGUAGCUCAGAGGAAGAGUGGUCGUCUCUUAGCU
75




GACAGGUCGUAGGUUCAAGUCCUACCAGGUUACCCA






513
tRNAGln(UUG)_2
UGGAGUAUAGCCAAGUGGUAAGGCACCGGUUUUUGGUAC
67




CGAGGUUCGAAUCCUUUUACUCCAGCCA






514
tRNAMet(CAU)_3
GGGCUUAUAGUUUAAUUGGUUGAAACGUACCGCUCAUAAC
77




GGUUAUAUUGUAGGUUCGAGCCCUACUAAGCCUACCA






515
tRNAMet(CAU)_4
GCAUCCAUGGCUGAAUGGUUAAAGCGCCCAACUCAUAAUU
77




GGCGAAUUCGUAGGUUCAAUUCCUACUGGAUGCACCA






516
tRNATyr(GUA)_2
GGGAGAGUGGCCGAGUGGUCAAAAGCGACAGACUGUAAA
86




UCUGUUGAAGUUUUUCUACGUAGGUUCGAAUCCUGCCUC





UCCCACCA






517
tRNASer(GCU)_2
GGAGGUAUGGCUGAGUGGCUUAAGGCAUUGGUUUGCUAA
91




AUCGACAUACAAGAAGAUUGUAUCAUGGGUUCGAAUCCCA





UUUCCUCCGCCA






518
tRNAPhe(GAA)_3
GUUCAGGUAGCUCAGCUGGUUAGAGCAAAGGACUGAAAA
77




UCCUUGUGUCAGUGGUUCGAAUCCACUUCUAAGCGCCA






519
tRNAPhe(AAA)
GUAACGAUCGAAUAAUGGAAGUUCACGGGGAAAGUCACUA
78




GACCCGAAGCAUUGGUUCAAAUCCAAUUCGUUACUCCA






520
tRNAPro(UGG)_3
AGGGAUGUAGCGCAGCUUGGUAGCGCCUUUGUUUUGGGU
82




AAAAAAUGUCACGGGUUCCAAUCCAAUCCUGUCAUCCCUA





CCA






521
tRNAIle(CAU)
GGGCUAUUAGCUCAGUGGUAGAGCGCGCCCCUGAUAAGG
75




GCGAGGUCUCUGGUUCAAGUCCAGGAUGGCCCACCA






522
tRNAGly(GCC)_3
GCGGAAAUAGCUUAAUGGUAGAGCAUAGCCUUGCCAAGG
75




CUGAGGUUGAGGGUUCAAGUCCCUCCUUCCGCUCCA









The sense sequences of SEQ ID NO: 1 to SEQ ID NO: 232 and the antisense sequences of SEQ ID NO: 233 to SEQ ID NO: 464 as shown in Table 2 are artificially synthesized in accordance with the present invention. In particular, these sequences are derived sequence fragments prepared according to the sequences in Table 1 isolated from Panax ginseng C. A. Mey. The double-stranded RNA molecules are classified into 3 groups: the first group is 5′-terminal group (5′-t) containing a 5′ terminal portion of the corresponding full-length mature tRNA molecules, forming segments of 2-35 nucleotides in length that are cut off in the D-ring, D-arm, anti-codon ring, or anti-codon ring arm. The second group is 3′-terminal group (3′-t) containing a 3′ terminal portion with CCA tail of the corresponding full-length mature tRNA molecules, forming segments of 2-35 nucleotides in length that are cut off in the T-ring, T-arm, anti-codon ring, or anti-codon ring arm. The third group is anticodon group RNA molecules containing the anticodon loop portion of the corresponding full-length mature tRNA molecules, forming segments of 2-24 nucleotides in length that are cut off in anti-codon ring, or anti-codon ring arm. In the embodiment, tRFs derived from tRNAHis(GUG) comprises 5′-tRFs “GCGGAUGUAGCCAAGUGGAUCA” that belongs to the family of 5′-tRFs with a length of 22 mer, 3′-tRFs “UCAAUUCCCGUCGUUCGCCCCA” that belongs to the family of 3′-tRFs with a length of 22 mer, 5′-tRFs “GCGGAUGUAGCCAAGUGGA” that belongs to the family of 5′-tRFs with a length of 19 mer, and 3′-tRFs “AUUCCCGUCGUUCGCCCCA” that belongs to the family of 3′-tRFs with a length of 19 mer, and anti-codon-tRFs “GUGGAUUGUGAAUCCAC” belongs to the family of anti-codon-tRFs with length of 17 mer.


Each of the sense sequences together with the corresponding antisense sequence form a double-stranded RNA molecule. As shown in Table 2, the sense sequence of SEQ ID NO: 1 and the antisense sequence of SEQ ID NO: 233 form a double-stranded RNA molecule with a length of 22 base pairs, and the resultant RNA molecule is denoted as HC70 for easy reference. Similarly, the sense sequence of SEQ ID NO: 2 and the antisense sequence of SEQ ID NO: 234 form a double-stranded RNA molecule with a length of 19 base pairs, and the resultant RNA molecule is denoted as HC50. Other RNA molecules of the present invention are presented in the Table 2.


The double-stranded RNA molecules are classified into 2 groups, namely a 5′-terminal group (5′-t), and a 3′-terminal group (3′-t). The 5′-t group RNA molecules contain a 5′ terminal portion of the corresponding full-length RNA molecules isolated from the plant; and the 3′-t group RNA molecules contain a 3′ terminal portion of the corresponding full-length RNA molecules isolated from the plant.


In another embodiment, RNA molecules may contain the anticodon loop portion of the corresponding full-length RNA molecules isolated from the plant and referred as anticodon group RNA molecules. The sense sequences of SEQ ID NO: 1 to SEQ ID NO: 232 can be generated by cleavage at different sites on the full-length RNA molecules SEQ ID NO: 465 to 522.


In addition, the RNA molecule of the present invention may comprise a 3′ overhang, preferably comprise 2 mer of 3′ overhangs. The provision of the 3′ overhang improves the stability of the RNA molecules.









TABLE 2







RNA molecules derived from the sequences in Table 1 through artificial


synthesis according to the present invention.
















SEQ

SEQ







ID
Sense sequence
ID
Antisense sequence
Length



Source
Code
NO.
(5′ to 3′)
NO.
(5′ to 3′)
(bp)
Group





tRNAHis(GUG)
HC70
  1
GCGGAUGUAGCC
233
UGAUCCACUUGGC
22
5′-t





AAGUGGAUCA

UACAUCCGC





HC50
  2
GCGGAUGUAGCC
234
UCCACUUGGCUAC
19






AAGUGGA

AUCCGC





HC71
  3
UCAAUUCCCGUC
235
UGGGGCGAACGA
22
3'-t





GUUCGCCCCA

CGGGAAUUGA





HC51
  4
AUUCCCGUCGUU
236
UGGGGCGAACGA
19






CGCCCCA

CGGGAAU







tRNAAsp(GUC)
HC72
  5
GGGAUUGUAGUU
237
UGACCGAUUGAAC
22
5'-t





CAAUCGGUCA

UACAAUCCC





HC52
  6
GGGAUUGUAGUU
238
CCGAUUGAACUAC
19






CAAUCGG

AAUCCC





HC73
  7
UCGAGCCCCGUC
239
UGGCGGGACUGA
22
3'-t





AGUCCCGCCA

CGGGGCUCGA





HC53
  8
AGCCCCGUCAGU
240
UGGCGGGACUGA
19






CCCGCCA

CGGGGCU







tRNAGly(GCC)_1
HC74
  9
GCGGAUAUAGUC
241
UUUACCAUUCGAC
22
5'-t





GAAUGGUAAA

UAUAUCCGC





HC54
 10
GCGGAUAUAGUC
242
ACCAUUCGACUAU
19






GAAUGGU

AUCCGC





HC75
 11
UCGAUUCCCGCU
243
UGGGGCGGAUAG
22
3'-t





AUCCGCCCCA

CGGGAAUCGA





HC55
 12
AUUCCCGCUAUC
244
UGGGGCGGAUAG
19






CGCCCCA

CGGGAAU







tRNALeu(CAA)
HC76
 13
GCCUUGGUGGUG
245
UCUACCAUUUCAC
22
5'-t





AAAUGGUAGA

CACCAAGGC





HC56
 14
GCCUUGGUGGUG
246
ACCAUUUCACCAC
19






AAAUGGU

CAAGGC





HC77
 15
UCGAGUCCUCUU
247
UGGUGCCUUGAA
22
3'-t





CAAGGCACCA

GAGGACUCGA





HC57
 16
AGUCCUCUUCAA
248
UGGUGCCUUGAA
19






GGCACCA

GAGGACU







tRNAMet(CAU)_1
HC78
 17
CGCGGAGUAGAG
249
UACCAAACUGCUC
22
5'-t





CAGUUUGGUA

UACUCCGCG





HC58
 18
CGCGGAGUAGAG
250
CAAACUGCUCUAC
19






CAGUUUG

UCCGCG





HC79
 19
UCAAAUCCUGUC
251
UGGUUGCGGAGA
22
3'-t





UCCGCAACCA

CAGGAUUUGA





HC59
 20
AAUCCUGUCUCC
252
UGGUUGCGGAGA
19






GCAACCA

CAGGAUU







tRNASer(GCU)_1
HC80
 21
GGAGAGAUGGCU
253
UAGUCCACUCAGC
22
5'-t





GAGUGGACUA

CAUCUCUCC





HC60
 22
GGAGAGAUGGCU
254
UCCACUCAGCCAU
19






GAGUGGA

CUCUCC





HC81
 23
GGAGAGAUGGCU
255
UGGCGGAAAGAG
22
3'-t





GAGUGGACUA

AGGGAUUCGA





HC61
 24
AAUCCCUCUCUU
256
UGGCGGAAAGAG
19






UCCGCCA

AGGGAUU







tRNAGln(UUG)_1
HC82
 25
UGGGGCGUGGC
257
CUUACCACUUGG
22
5'-t





CAAGUGGUAAG

CCACGCCCCA





HC62
 26
UGGGGCGUGGC
258
ACCACUUGGCCAC
19






CAAGUGGU

GCCCCA





HC83
 27
UCGAAUCCUUCC
259
UGGCUGGGACGG
22
3'-t





GUCCCAGCCA

AAGGAUUCGA





HC63
 28
AAUCCUUCCGUC
260
UGGCUGGGACGG
19






CCAGCCA

AAGGAUU







tRNAGlu(UUC)_1
HC84
 29
GCCCCCAUCGUC
261
UGAACCACUAGAC
22
5'-t





UAGUGGUUCA

GAUGGGGGC





HC64
 30
GCCCCCAUCGUC
262
ACCACUAGACGAU
19






UAGUGGU

GGGGGC





HC85
 31
UCGACUUCCCCU
263
UGGUACCCCCAG
22
3'-t





GGGGGUACCA

GGGAAGUCGA





HC65
 32
ACUUCCCCUGGG
264
UGGUACCCCCAG
19






GGUACCA

GGGAAGU







tRNAAsn(GUU)
HC86
 33
UCCUCAGUAGCU
265
UCUACCACUGAGC
22
5'-t





CAGUGGUAGA

UACUGAGGA





HC66
 34
UCCUCAGUAGCU
266
ACCACUGAGCUAC
19






CAGUGGU

UGAGGA





HC87
 35
UCGAAUCCUACC
267
UGGCUCCCCAGG
22
3'-t





UGGGGAGCCA

UAGGAUUCGA





HC67
 36
AAUCCUACCUGG
268
UGGCUCCCCAGG
19






GGAGCCA

UAGGAUU







tRNAPro(UGG)_1
HC88
 37
AGGGAUGUAGCG
269
UACCAAGCUGCG
22
5'-t





CAGCUUGGUA

CUACAUCCCU





HC68
 38
AGGGAUGUAGCG
270
CAAGCUGCGCUA
19






CAGCUUG

CAUCCCU





HC89
 39
GGUUCAAAUCCU
271
UAGGGAUGACAG
22
3'-t





GUCAUCCCUA

GAUUUGAACC





HC69
 40
UCAAAUCCUGUC
272
UAGGGAUGACAG
19






AUCCCUA

GAUUUGA







tRNAGln(CUG)
HC90
 41
GGUUCCAUGGUC
273
CUGACCACUAGAC
22
5'-t





UAGUGGUCAG

CAUGGAACC





HC91
 42
GGUUCCAUGGUC
274
ACCACUAGACCAU
19






UAGUGGU

GGAACC





HC92
 43
UCAGGUCUCGGU
275
UGGAGGUUCCAC
22
3'-t





GGAACCUCCA

CGAGACCUGA





HC93
 44
GGUCUCGGUGGA
276
UGGAGGUUCCAC
19






ACCUCCA

CGAGACC







tRNAGlu(UUG)
HC94
 45
UCCGUUGUCGUC
277
CUAACCGCUGGA
22
5'-t





CAGCGGUUAG

CGACAACGGA





HC95
 46
UCCGUUGUCGUC
278
ACCGCUGGACGA
19






CAGCGGU

CAACGGA





HC96
 47
UCGUUUCCCGGC
279
UGGUUCCGUUGC
22
3'-t





AACGGAACCA

CGGGAAACGA





HC97
 48
UUUCCCGGCAAC
280
UGGUUCCGUUGC
19






GGAACCA

CGGGAAA







tRNACys(GCA)
HC98
 49
GGCUAGGUAACA
281
AUUUCCAUUAUGU
22
5'-t





UAAUGGAAAU

UACCUAGCC





HC99
 50
GGCUAGGUAACA
282
UCCAUUAUGUUAC
19






UAAUGGA

CUAGCC





HC100
 51
UCGACCCCGUCC
283
UGGAGGCCAAGG
22
3'-t





UUGGCCUCCA

ACGGGGUCGA





HC101
 52
ACCCCGUCCUUG
284
UGGAGGCCAAGG
19






GCCUCCA

ACGGGGU







tRNAMet(CAU)_1
HC102
 53
AGCGGGGUAGAG
285
UUGACCAUUACUC
22
5'-t





UAAUGGUCAA

UACCCCGCU





HC103
 54
AGCGGGGUAGAG
286
ACCAUUACUCUAC
19






UAAUGGU

CCCGCU





HC104
 55
UCGAAUCCUGUC
287
UGGAGGCGGGGA
22
3'-t





CCCGCCUCCA

CAGGAUUCGA





HC105
 56
AAUCCUGUCCCC
288
UGGAGGCGGGGA
19






GCCUCCA

CAGGAUU







tRNAPro(UGG)_2
HC106
 57
CGAGGUGUAGCG
289
GACCAGACUGCG
22
5'-t





CAGUCUGGUC

CUACACCUCG





HC107
 58
CGAGGUGUAGCG
290
CAGACUGCGCUA
19






CAGUCUG

CACCUCG





HC108
 59
UCGAAUCCUGUC
291
UGGUCAAGGUGA
22
3'-t





ACCUUGACCA

CAGGAUUCGA





HC109
 60
AAUCCUGUCACC
292
UGGUCAAGGUGA
19






UUGACCA

CAGGAUU







tRNAGly(GCC)_2
HC110
 61
GCACCAGUGGUC
293
UCUACCACUAGAC
22
5'-t





UAGUGGUAGA

CACUGGUGC





HC111
 62
GCACCAGUGGUC
294
ACCACUAGACCAC
19






UAGUGGU

UGGUGC





HC112
 63
UCGUUUCCCGGC
295
UGGUGCACCAGC
22
3'-t





UGGUGCACCA

CGGGAAACGA





HC113
 64
UUUCCCGGCUGG
296
UGGUGCACCAGC
19






UGCACCA

CGGGAAA







tRNAAsp(GUC)
HC114
 65
GUCGUUGUAGUA
297
CUUACCACUAUAC
22
5'-t





UAGUGGUAAG

UACAACGAC





HC115
 66
GUCGUUGUAGUA
298
ACCACUAUACUAC
19






UAGUGGU

AACGAC





HC116
 67
UCGAUCCCCGGC
299
UGGCGCCGUUGC
22
3'-t





AACGGCGCCA

CGGGGAUCGA





HC117
 68
AUCCCCGGCAAC
300
UGGCGCCGUUGC
19






GGCGCCA

CGGGGAU







tRNATry(GCA)
HC118
 69
CCGACCUUAGCU
301
CUACCAACUGAGC
22
5'-t





CAGUUGGUAG

UAAGGUCGG





HC119
 70
CCGACCUUAGCU
302
CCAACUGAGCUAA
19






CAGUUGG

GGUCGG





HC120
 71
UCGAAUCCGGCU
303
UGGUCCGACCAG
22
3'-t





GGUCGGACCA

CCGGAUUCGA





HC121
 72
AAUCCGGCUGGU
304
UGGUCCGACCAG
19






CGGACCA

CCGGAUU







tRNAAla(AGC)
HC122
 73
GGGGAUGUAGCU
305
CUACCAUCUGAGC
22
5'-t





CAGAUGGUAG

UACAUCCCC





HC123
 74
GGGGAUGUAGCU
306
CCAUCUGAGCUAC
19






CAGAUGG

AUCCCC





HC124
 75
UCGAUACCCCGC
307
UGGUGGAGAUGC
22
3'-t





AUCUCCACCA

GGGGUAUCGA





HC125
 76
AUACCCCGCAUC
308
UGGUGGAGAUGC
19






UCCACCA

GGGGUAU







tRNAGlu(CUC)
HC126
 77
UCCGUUGUAGUC
309
UGACCAACUAGAC
22
5'-t





UAGUUGGUCA

UACAACGGA





HC127
 78
UCCGUUGUAGUC
310
CCAACUAGACUAC
19






UAGUUGG

AACGGA





HC128
 79
UCAAGUCCCGGC
311
UGGUUCCGUUGC
22
3'-t





AACGGAACCA

CGGGACUUGA





HC129
 80
AGUCCCGGCAAC
312
UGGUUCCGUUGC
19






GGAACCA

CGGGACU







tRNAGlu(UUC)_2
HC130
 81
GUCCCUUUCGUC
313
CUAACCACUGGAC
22
5'-t





CAGUGGUUAG

GAAAGGGAC





HC131
 82
GUCCCUUUCGUC
314
ACCACUGGACGAA
19






CAGUGGU

AGGGAC





HC132
 83
UCGAUUCCCGUA
315
UGGUACCCCUUA
22
3'-t





AGGGGUACCA

CGGGAAUCGA





HC133
 84
AUUCCCGUAAGG
316
UGGUACCCCUUA
19






GGUACCA

CGGGAAU







tRNAArg(CCU)
HC134
 85
GCGCCUGUAGCU
317
CUAUCCACUGAGC
22
5'-t





CAGUGGAUAG

UACAGGCGC





HC135
 86
GCGCCUGUAGCU
318
UCCACUGAGCUAC
19






CAGUGGA

AGGCGC





HC136
 87
UCGACCCCUACC
319
UGGCGCGCCAGG
22
3'-t





UGGCGCGCCA

UAGGGGUCGA





HC137
 88
ACCCCUACCUGG
320
UGGCGCGCCAGG
19






CGCGCCA

UAGGGGU







tRNAVal(AAC)
HC138
 89
GGUUUCGUGGUG
321
UAACCAACUACAC
22
5'-t





UAGUUGGUUA

CACGAAACC





HC139
 90
GGUUUCGUGGUG
322
CCAACUACACCAC
19






UAGUUGG

GAAACC





HC140
 91
UCGAACCCGGGC
323
UGGUGGCUUCGC
22
3'-t





GAAGCCACCA

CCGGGUUCGA





HC141
 92
AACCCGGGCGAA
324
UGGUGGCUUCGC
19






GCCACCA

CCGGGUU







tRNAVal(CAC)
HC142
 93
GUCUGGGUGGU
325
UAACCGACUACAC
22
5'-t





GUAGUCGGUUA

CACCCAGAC





HC143
 94
GUCUGGGUGGU
326
CCGACUACACCAC
19






GUAGUCGG

CCAGAC





HC144
 95
UCGAACCCGGGC
327
UGGUGUCUGAGC
22
3'-t





UCAGACACCA

CCGGGUUCGA





HC145
 96
AACCCGGGCUCA
328
UGGUGUCUGAGC
19






GACACCA

CCGGGUU







tRNASer(UGA)
HC146
 97
GGAUGGAUGUCU
329
CCAACCGCUCAGA
22
5'-t





GAGCGGUUGG

CAUCCAUCC





HC147
 98
GGAUGGAUGUCU
330
ACCGCUCAGACAU
19






GAGCGGU

CCAUCC





HC148
 99
UCGAAUCCCUCU
331
UGGCGGAUGGAG
22
3'-t





CCAUCCGCCA

AGGGAUUCGA





HC149
100
AAUCCCUCUCCA
332
UGGCGGAUGGAG
19






UCCGCCA

AGGGAUU







tRNAPhe(GAA)
HC150
101
GCGGGGAUAGCU
333
CUCCCAACUGAGC
22
5'-t





CAGUUGGGAG

UAUCCCCGC





HC151
102
GCGGGGAUAGCU
334
CCAACUGAGCUAU
19






CAGUUGG

CCCCGC





HC152
103
UUGAUCCACGUU
335
UGGUGCGGUGAA
22
3'-t





CACCGCACCA

CGUGGAUCAA





HC153
104
AUCCACGUUCAC
336
UGGUGCGGUGAA
19






CGCACCA

CGUGGAU







tRNAHis(CAU)
HC154
105
GCAUCCAUGGCU
337
UUAACCAUUCAGC
22
5'-t





GAAUGGUUAA

CAUGGAUGC





HC155
106
GCAUCCAUGGCU
338
ACCAUUCAGCCAU
19






GAAUGGU

GGAUGC





HC156
107
UCAAUUCCUACU
339
UGGUGCAUCCAG
22
3'-t





GGAUGCACCA

UAGGAAUUGA





HC157
108
AUUCCUACUGGA
340
UGGUGCAUCCAG
19






UGCACCA

UAGGAAU







tRNALys(UUU)_1
HC158
109
GGGUUGCUAACU
341
UCUACCGUUGAG
22
5'-t





CAACGGUAGA

UUAGCAACCC





HC159
110
GGGUUGCUAACU
342
ACCGUUGAGUUA
19






CAACGGU

GCAACCC





HC160
111
UCGAAUCCCGGG
343
UGGUGGGUUGCC
22
3'-t





CAACCCACCA

CGGGAUUCGA





HC161
112
AAUCCCGGGCAA
344
UGGUGGGUUGCC
19






CCCACCA

CGGGAUU







tRNASer(UGA)
HC162
113
GGAGAGAUGGCU
345
UCAACCACUCAGC
22
5'-t





GAGUGGUUGA

CAUCUCUCC





HC163
114
GGAGAGAUGGCU
346
ACCACUCAGCCAU
19






GAGUGGU

CUCUCC





HC164
115
UCGAAUCCCUCU
347
UGGAGGAGAGAG
22
3'-t





CUCUCCUCCA

AGGGAUUCGA





HC165
116
AAUCCCUCUCUC
348
UGGAGGAGAGAG
19






UCCUCCA

AGGGAUU







tRNASer(GGA)
HC166
117
AGGAGAGAUGGC
349
CAACCACUCGGCC
22
5'-t





CGAGUGGUUG

AUCUCUCCU





HC167
118
AGGAGAGAUGGC
350
CCACUCGGCCAU
19






CGAGUGG

CUCUCCU





HC168
119
UCGAAUCCCUCU
351
UGGCGGAAAGAG
22
3'-t





CUUUCCGCCA

AGGGAUUCGA





HC169
120
AAUCCCUCUCUU
352
UGGCGGAAAGAG
19






UCCGCCA

AGGGAUU







tRNAGly(UCC)
HC170
121
GCGGGUAUAGUU
353
UUUACCACUAAAC
22
5'-t





UAGUGGUAAA

UAUACCCGC





HC171
122
GCGGGUAUAGUU
354
ACCACUAAACUAU
19






UAGUGGU

ACCCGC





HC172
123
UCGAUUCCCGCU
355
UGGAGCGGGUAG
22
3'-t





ACCCGCUCCA

CGGGAAUCGA





HC173
124
AUUCCCGCUACC
356
UGGAGCGGGUAG
19






CGCUCCA

CGGGAAU







tRNAArg(UCU)
HC174
125
GCGUCCAUUGUC
357
CUAUCCAUUAGAC
22
5'-t





UAAUGGAUAG

AAUGGACGC





HC175
126
GCGUCCAUUGUC
358
UCCAUUAGACAAU
19






UAAUGGA

GGACGC





HC176
127
UCAAAUCCUAUU
359
UGGUGCGUCCAA
22
3'-t





GGACGCACCA

UAGGAUUUGA





HC177
128
AAUCCUAUUGGA
360
UGGUGCGUCCAA
19






CGCACCA

UAGGAUU







tRNAArg(ACG)
HC178
129
GGGCCUGUAGCU
361
UAAUCCUCUGAGC
22
5'-t





CAGAGGAUUA

UACAGGCCC





HC179
130
GGGCCUGUAGCU
362
UCCUCUGAGCUA
19






CAGAGGA

CAGGCCC





HC180
131
UCGAAUCCCUCC
363
UGGUGGGCGAGG
22
3'-t





UCGCCCACCA

AGGGAUUCGA





HC181
132
AAUCCCUCCUCG
364
UGGUGGGCGAGG
19






CCCACCA

AGGGAUU







tRNACys(GCA)
HC182
133
GGCGAUAUGGCC
365
CUUACCACUCGG
22
5'-t





GAGUGGUAAG

CCAUAUCGCC





HC183
134
GGCGAUAUGGCC
366
ACCACUCGGCCAU
19






GAGUGGU

AUCGCC





HC184
135
UCAAAUCCGGGU
367
UGGAGGCGACAC
22
3'-t





GUCGCCUCCA

CCGGAUUUGA





HC185
136
AAUCCGGGUGUC
368
UGGAGGCGACAC
19






GCCUCCA

CCGGAUU







tRNATyr(GUA)_1
HC186
137
GGGUCGAUGCCC
369
UUAACCGCUCGG
22
5'-t





GAGCGGUUAA

GCAUCGACCC





HC187
138
GGGUCGAUGCCC
370
ACCGCUCGGGCA
19






GAGCGGU

UCGACCC





HC188
139
UCAAAUCCAGCU
371
UGGUGGGCCGAG
22
3'-t





CGGCCCACCA

CUGGAUUUGA





HC189
140
AAUCCAGCUCGG
372
UGGUGGGCCGAG
19






CCCACCA

CUGGAUU







tRNAThr(GGU)
HC190
141
GCCCUUUUAACU
373
UCUACCGCUGAG
22
5'-t





CAGCGGUAGA

UUAAAAGGGC





HC191
142
GCCCUUUUAACU
374
ACCGCUGAGUUAA
19






CAGCGGU

AAGGGC





HC192
143
UCAAAUCCGAUA
375
UGGAGCCCCUUA
22
3'-t





AGGGGCUCCA

UCGGAUUUGA





HC193
144
AAUCCGAUAAGG
376
UGGAGCCCCUUA
19






GGCUCCA

UCGGAUU







tRNAThr(UGU)
HC194
145
GCCUGCUUAGCU
377
CUAACCUCUGAGC
22
5'-t





CAGAGGUUAG

UAAGCAGGC





HC195
146
GCCUGCUUAGCU
378
ACCUCUGAGCUAA
19






CAGAGGU

GCAGGC





HC196
147
UCGAUUCCGAUA
379
UGGAGCCGGCUA
22
3'-t





GCCGGCUCCA

UCGGAAUCGA





HC197
148
AUUCCGAUAGCC
380
UGGAGCCGGCUA
19






GGCUCCA

UCGGAAU







tRNAMet(CAU)_2
HC198
149
ACCUACUUAACU
381
CUAACCACUGAGU
22
5'-t





CAGUGGUUAG

UAAGUAGGU





HC199
150
ACCUACUUAACU
382
ACCACUGAGUUAA
19






CAGUGGU

GUAGGU





HC200
151
UCAAAUCCAAUA
383
UGGUACCUACUAU
22
3'-t





GUAGGUACCA

UGGAUUUGA





HC201
152
AAUCCAAUAGUA
384
UGGUACCUACUAU
19






GGUACCA

UGGAUU







tRNALeu(UAA)
HC202
153
GGGGAUAUGGCG
385
CUACCAAUUCCGC
22
5'-t





GAAUUGGUAG

CAUAUCCCC





HC203
154
GGGGAUAUGGCG
386
CCAAUUCCGCCAU
19






GAAUUGG

AUCCCC





HC204
155
UCAAGUCCCUCU
387
UGGUGGGGAUAG
22
3'-t





AUCCCCACCA

AGGGACUUGA





HC205
156
AGUCCCUCUAUC
388
UGGUGGGGAUAG
19






CCCACCA

AGGGACU







tRNALeu(UAG)
HC206
157
GCCGCUAUGGUG
389
CUACCGAUUUCAC
22
5'-t





AAAUCGGUAG

CAUAGCGGC





HC207
158
GCCGCUAUGGUG
390
CCGAUUUCACCAU
19






AAAUCGG

AGCGGC





HC208
159
UCGAGUCCGAGU
391
UGGUGCCGCCAC
22
3'-t





GGCGGCACCA

UCGGACUCGA





HC209
160
AGUCCGAGUGGC
392
UGGUGCCGCCAC
19






GGCACCA

UCGGACU







tRNAPhe(GAA)_2
HC210
161
GUCGGGAUAGCU
393
CUACCAGCUGAG
22
5'-t





CAGCUGGUAG

CUAUCCCGAC





HC211
162
GUCGGGAUAGCU
394
CCAGCUGAGCUA
19






CAGCUGG

UCCCGAC





HC212
163
UCAAAUCUGGUU
395
UGGUGCCAGGAA
22
3'-t





CCUGGCACCA

CCAGAUUUGA





HC213
164
AAUCUGGUUCCU
396
UGGUGCCAGGAA
19






GGCACCA

CCAGAUU







tRNAVal(UAC)
HC214
165
AGGGCUAUAGCU
397
UACCUAACUGAGC
22
5'-t





CAGUUAGGUA

UAUAGCCCU





HC215
166
AGGGCUAUAGCU
398
CUAACUGAGCUAU
19






CAGUUAG

AGCCCU





HC216
167
CCGAGUCCGUAU
399
UGGUAGGGCUAU
22
3'-t





AGCCCUACCA

ACGGACUCGG





HC217
168
AGUCCGUAUAGC
400
UGGUAGGGCUAU
19






CCUACCA

ACGGACU







tRNAVal(GAC)
HC218
169
AGGGAUAUAACU
401
UCUACCGCUGAG
22
5'-t





CAGCGGUAGA

UUAUAUCCCU





HC219
170
AGGGAUAUAACU
402
ACCGCUGAGUUA
19






CAGCGGU

UAUCCCU





HC220
171
UCGAGCCUGAUU
403
UGGUAGGGAUAA
22
3'-t





AUCCCUACCA

UCAGGCUCGA





HC221
172
AGCCUGAUUAUC
404
UGGUAGGGAUAA
19






CCUACCA

UCAGGCU







tRNATrp(CCA)
HC222
173
GCGCUCUUAGUU
405
UACCGAACUGAAC
22
5'-t





CAGUUCGGUA

UAAGAGCGC





HC223
174
GCGCUCUUAGUU
406
CGAACUGAACUAA
19






CAGUUCG

GAGCGC





HC224
175
UCAAAUCCUACA
407
UGGCACGCUCUG
22
3'-t





GAGCGUGCCA

UAGGAUUUGA





HC225
176
AAUCCUACAGAG
408
UGGCACGCUCUG
19






CGUGCCA

UAGGAUU







tRNAIle(GAU)
HC226
177
GGGCUAUUAGCU
409
UCUACCACUGAGC
22
5'-t





CAGUGGUAGA

UAAUAGCCC





HC227
178
GGGCUAUUAGCU
410
ACCACUGAGCUAA
19






CAGUGGU

UAGCCC





HC228
179
UCAAGUCCAGGA
411
UGGUGGGCCAUC
22
3'-t





UGGCCCACCA

CUGGACUUGA





HC229
180
AGUCCAGGAUGG
412
UGGUGGGCCAUC
19






CCCACCA

CUGGACU







tRNAAla(UGC)
HC230
181
GGGGAUAUAGCU
413
CUACCAACUGAGC
22
5'-t





CAGUUGGUAG

UAUAUCCCC





HC231
182
GGGGAUAUAGCU
414
CCAACUGAGCUAU
19






CAGUUGG

AUCCCC





HC232
183
UCGAGUCCGCUU
415
UGGUGGAGAUAA
22
3'-t





AUCUCCACCA

GCGGACUCGA





HC233
184
AGUCCGCUUAUC
416
UGGUGGAGAUAA
19






UCCACCA

GCGGACU







tRNALys(UUU)_2
HC234
185
GGGUGUAUAGCU
417
CUACCAACUGAGC
22
5'-t





CAGUUGGUAG

UAUACACCC





HC235
186
GGGUGUAUAGCU
418
CCAACUGAGCUAU
19






CAGUUGG

ACACCC





HC236
187
UCAAGUCCUGCU
419
UGGUGGGUAUAG
22
3'-t





AUACCCACCA

CAGGACUUGA





HC237
188
AGUCCUGCUAUA
420
UGGUGGGUAUAG
19






CCCACCA

CAGGACU







tRNALys(CUU)
HC238
189
CACCCUGUAGCU
421
UCUUCCUCUGAG
22
5'-t





CAGAGGAAGA

CUACAGGGUG





HC239
190
CACCCUGUAGCU
422
UCCUCUGAGCUA
19






CAGAGGA

CAGGGUG





HC240
191
UCAAGUCCUACC
423
UGGGUAACCUGG
22
3'-t





AGGUUACCCA

UAGGACUUGA





HC241
192
AGUCCUACCAGG
424
UGGGUAACCUGG
19






UUACCCA

UAGGACU







tRNAGln(UUG)_2
HC242
193
UGGAGUAUAGCC
425
CUUACCACUUGG
22
5'-t





AAGUGGUAAG

CUAUACUCCA





HC243
194
UGGAGUAUAGCC
426
ACCACUUGGCUAU
19






AAGUGGU

ACUCCA





HC244
195
UCGAAUCCUUUU
427
UGGCUGGAGUAA
22
3'-t





ACUCCAGCCA

AAGGAUUCGA





HC245
196
AAUCCUUUUACU
428
UGGCUGGAGUAA
19






CCAGCCA

AAGGAUU







tRNAMet(CAU)_3
HC246
197
GGGCUUAUAGUU
429
CAACCAAUUAAAC
22
5'-t





UAAUUGGUUG

UAUAAGCCC





HC247
198
GGGCUUAUAGUU
430
CCAAUUAAACUAU
19






UAAUUGG

AAGCCC





HC248
199
UCGAGCCCUACU
431
UGGUAGGCUUAG
22
3'-t





AAGCCUACCA

UAGGGCUCGA





HC249
200
AGCCCUACUAAG
432
UGGUAGGCUUAG
19






CCUACCA

UAGGGCU







tRNAMet(CAU)_4
HC250
201
GCAUCCAUGGCU
433
UUAACCAUUCAGC
22
5'-t





GAAUGGUUAA

CAUGGAUGC





HC251
202
GCAUCCAUGGCU
434
ACCAUUCAGCCAU
19






GAAUGGU

GGAUGC





HC252
203
UCAAUUCCUACU
435
UGGUGCAUCCAG
22
3'-t





GGAUGCACCA

UAGGAAUUGA





HC253
204
AUUCCUACUGGA
436
UGGUGCAUCCAG
19






UGCACCA

UAGGAAU







tRNATyr(GUA)_2
HC254
205
GGGAGAGUGGCC
437
UUGACCACUCGG
22
5'-t





GAGUGGUCAA

CCACUCUCCC





HC255
206
GGGAGAGUGGCC
438
ACCACUCGGCCAC
19






GAGUGGU

UCUCCC





HC256
207
UCGAAUCCUGCC
439
UGGUGGGAGAGG
22
3'-t





UCUCCCACCA

CAGGAUUCGA





HC257
208
AAUCCUGCCUCU
440
UGGUGGGAGAGG
19






CCCACCA

CAGGAUU







tRNASer(GCU)_2
HC258
209
GGAGGUAUGGCU
441
UAAGCCACUCAGC
22
5'-t





GAGUGGCUUA

CAUACCUCC





HC259
210
GGAGGUAUGGCU
442
GCCACUCAGCCAU
19






GAGUGGC

ACCUCC





HC260
211
UCGAAUCCCAUU
443
UGGCGGAGGAAA
22
3'-t





UCCUCCGCCA

UGGGAUUCGA





HC261
212
AAUCCCAUUUCC
444
UGGCGGAGGAAA
19






UCCGCCA

UGGGAUU







tRNAPhe(GAA)_3
HC262
213
GUUCAGGUAGCU
445
UAACCAGCUGAGC
22
5'-t





CAGCUGGUUA

UACCUGAAC





HC263
214
GUUCAGGUAGCU
446
CCAGCUGAGCUA
19






CAGCUGG

CCUGAAC





HC264
215
UCGAAUCCACUU
447
UGGCGCUUAGAA
22
3'-t





CUAAGCGCCA

GUGGAUUCGA





HC265
216
AAUCCACUUCUA
448
UGGCGCUUAGAA
19






AGCGCCA

GUGGAUU







tRNAPhe(AAA)
HC266
217
GUAACGAUCGAA
449
ACUUCCAUUAUUC
22
5'-t





UAAUGGAAGU

GAUCGUUAC





HC267
218
GUAACGAUCGAA
450
UCCAUUAUUCGAU
19






UAAUGGA

CGUUAC





HC268
219
UCAAAUCCAAUU
451
UGGAGUAACGAAU
22
3'-t





CGUUACUCCA

UGGAUUUGA





HC269
220
AAUCCAAUUCGU
452
UGGAGUAACGAAU
19






UACUCCA

UGGAUU







tRNAPro(UGG)_3
HC270
221
AGGGAUGUAGCG
453
UACCAAGCUGCG
22
5'-t





CAGCUUGGUA

CUACAUCCCU





HC271
222
AGGGAUGUAGCG
454
CAAGCUGCGCUA
19






CAGCUUG

CAUCCCU





HC272
223
UCCAAUCCUGUC
455
UGGUAGGGAUGA
22
3'-t





AUCCCUACCA

CAGGAUUGGA





HC273
224
AAUCCUGUCAUC
456
UGGUAGGGAUGA
19






CCUACCA

CAGGAUU







tRNAIle(CAU)
HC274
225
GGGCUAUUAGCU
457
UCUACCACUGAGC
22
5'-t





CAGUGGUAGA

UAAUAGCCC





HC275
226
GGGCUAUUAGCU
458
ACCACUGAGCUAA
19






CAGUGGU

UAGCCC





HC276
227
UCAAGUCCAGGA
459
UGGUGGGCCAUC
22
3'-t





UGGCCCACCA

CUGGACUUGA





HC277
228
AGUCCAGGAUGG
460
UGGUGGGCCAUC
19






CCCACCA

CUGGACU







tRNAGly(GCC)_3
HC278
229
GCGGAAAUAGCU
461
UCUACCAUUAAGC
22
5'-t





UAAUGGUAGA

UAUUUCCGC





HC279
230
GCGGAAAUAGCU
462
ACCAUUAAGCUAU
19






UAAUGGU

UUCCGC





HC280
231
UCAAGUCCCUCC
463
UGGAGCGGAAGG
22
3'-t





UUCCGCUCCA

AGGGACUUGA





HC281
232
AGUCCCUCCUUC
464
UGGAGCGGAAGG
19






CGCUCCA

AGGGACU









The inventors unexpectedly found that the RNA molecules isolated or derived from a plant of genus Panax in particular Panax ginseng C. A. Mey are effective on protecting cardiomyocytes, in particular they are capable of promoting the growth, proliferation and/or metastasis of cardiomyocytes.


Turning back to the method of treatment, the method comprises the step of administering an effective amount of RNA molecule as described above to the subject suffering from heart diseases. In an embodiment, the step of administering the RNA molecule to the subject comprises contacting cardiomyocytes of the subject with the RNA molecule.


The term “CHD” describes a physiological condition in subjects in which heart arteries are narrowed, less blood and oxygen reach the heart muscle. In an embodiment, the CHD to be treated is atherosclerosis, angina, heart attack and myocardial infarction. In a particular embodiment, the CHD is myocardial infarction. Accordingly, the method of the present invention can be applied to treat a subject suffering from a coronary heart disease and related disorders.


The term “subject” used herein refers to a living organism and can include but is not limited to a human and an animal. The subject is preferably a mammal, preferably a human. The RNA molecules may be administered through injection to the subject, preferably a human. The term injection encompasses intravenous, intramuscular, subcutaneous and intradermal administration. In an embodiment, the RNA molecule of the present invention is administered together with suitable excipient(s) to the subject through intravenous injection. For instance, the RNA molecule may be delivered to the subject or cells via transfection, electroporation or viral-mediated delivery.


The expression “effective amount” generally denotes an amount sufficient to produce therapeutically desirable results, wherein the exact nature of the result varies depending on the specific condition which is treated. In this invention, CHD is the condition to be treated and therefore the result is usually a promotion or protection of the growth and proliferation of cardiomyocytes, a protection or amelioration of symptoms related to CHD. In an embodiment, where the injury is hypoxia/reoxygenation (ischemia/reperfusion) injury, the result is usually a promotion of the growth and proliferation of cardiomyocytes, relief of destruction of the cytoskeleton or amelioration of symptoms related to injured cardiomyocytes.


The RNA molecule of the present invention may be administered in form of a pharmaceutical composition comprising the RNA molecule and at least one pharmaceutically tolerable excipient. The pharmaceutically tolerable excipient may be one or more of a diluent, a filler, a binder, a disintegrant, a lubricant, a coloring agent, a surfactant, a gene delivery carrier and a preservative. The pharmaceutical composition can be present in solid, semisolid or liquid form, preferably in liquid form. The pharmaceutical composition can be liposome freeze-dried powder, polypeptide nanometer freeze-dried powder, spray and tablets. The pharmaceutical composition may comprise further pharmaceutical effective ingredients such as therapeutic compounds which are used for treating CHD such as Rg1. The skilled technician is able to select suitable pharmaceutically tolerable excipients depending on the form of the pharmaceutical composition and is aware of methods for manufacturing pharmaceutical compositions as well as able to select a suitable method for preparing the pharmaceutical composition depending on the kind of pharmaceutically tolerable excipients and the form of the pharmaceutical composition.


In an embodiment, RNA molecules provided as a composition containing a gene delivery vector. A gene delivery vector is any molecule that act as a carrier to deliver a gene to a cell. In embodiments where RNA molecules are transfected into cells, gene delivery vectors are considered to be transfection agents. In the embodiment of delivering RNA molecules by a recombinant viral vector, the gene delivery vector is a viral vector carrying a double-stranded RNA molecule describe above in the present invention. Gene delivery vectors include but are not limited to vectors such as virus vectors, collagens such as terminated peptide collagens, polymers such as polyetenimine (PEI), polypeptides such as poly (L-lysine) and protamine, and liposomes such as Lipofectamine. Gene delivery vectors can be commercially available, such as transfection reagents from Thermo Fisher, U.S.A. including Lipofectamine RNAiMAX, Lipofectamine 3000, Lipofectamine 2000 and DharmaFECT series from Dharmacon; RNAi-Mate from GenePharma, China; terminated peptide collagens from Koken Co. Ltd, Japan; and Histidine-lysine peptide copolymer from siRNAomics, China. Gene delivery vectors can be viral vectors based on retroviruses, adeno-associated viruses, adenoviruses, and lentiviruses. The gene delivery vector should be of low toxicity and not induce significant immune response in subjects. In an embodiment, the pharmaceutical composition may further comprise a nucleic acid stabilizer. The nucleic acid stabilizer refers to any chemicals that are capable of maintaining the stability of the RNA molecule in the composition to minimize or avoid degradation, in particular those having ability to deactivate activity of nucleases or the like degrading the RNA molecules.


Accordingly, the present invention also pertains to a pharmaceutical composition as described above, in particular comprising the RNA molecule and a pharmaceutically tolerable excipient as defined above. In an embodiment, the RNA molecule comprises at least one sequence selected from SEQ ID NO: 1 to 232 or a functional variant or homologue thereof.


Preferably, the RNA molecule is isolated or derived from a plant of the genus Panax as described above, in particular from Panax ginseng C. A. Mey.


The RNA molecules of the present invention are also suitable for promoting the growth and proliferation of cardiomyocytes. In another aspect of the invention, there is provided a method of promoting the growth and proliferation of cardiomyocytes comprising a step of contacting said cells with an effective amount of a RNA molecule as defined above. Preferably the RNA molecule is isolated or derived from a plant of the genus Panax or comprises a sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof.


In an embodiment, the RNA molecule has a sequence length of from about 50 to 200 nucleotides, more preferably has a length of from about 60 to about 150 nucleotides, in particular from about 70 to about 100 nucleotides. The RNA molecule is a non-coding molecule preferably a transfer RNA molecule. Preferably, the RNA molecule comprises a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522 or a functional variant or homologue thereof; or the RNA molecule comprises SEQ ID NO: 465 to SEQ ID NO: 468 or a functional variant or homologue thereof; or the RNA molecule consists of a sequence selected from SEQ ID NO: 465 to SEQ ID NO: 522 or SEQ ID NO: 465 to SEQ ID NO: 468 or a functional variant or homologue thereof.


In an alternative embodiment, the RNA molecule has a sequence length of from about 10 to about 30 base pairs, from about 15 to about 25 base pairs, from about 19 to about 22 base pairs, 19 base pairs or 22 base pairs. Preferably, the RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof, in particular SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue thereof; or consists of a sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232, in particular SEQ ID NO: 1 to SEQ ID NO: 40 or a functional variant or homologue thereof. The double-stranded RNA molecule comprises a complementary antisense sequence. The RNA molecule may further comprise 2 mer of 3′ overhangs.


The step of contacting the cardiomyocytes with the RNA molecule of the present invention may be carried out by applying a composition in particular an incubation solution comprising the RNA molecule to said cardiomyocytes which incubation solution may further comprise suitable excipients as defined above, a buffer or a suitable growth medium. In such embodiment of the present invention, the cardiomyocytes are taken from a subject such as an animal or human, in particular a human. The RNA molecule is provided in the composition at a concentration of at least 0.3 nM, at least 3 nM, from about 0.3 nM to about 900 nM, from about 10 nM to about 100 nM, or from about 50 nM to about 300 nM. In addition, excipients may include gene delivery vectors, such as, but not limited to, collagen-based vectors or liposome formers.


In addition to the above, the present invention pertains to a double-stranded RNA molecule as described above, i.e. comprising a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof, and a complementary antisense sequence. In particular, the double-stranded RNA molecule consists of a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof, a complementary antisense sequence selected from SEQ ID NO: 233 to SEQ ID NO: 464, and optionally a 3′ overhang. Example embodiments of the double-stranded RNA molecule are presented in Table 2. The double-stranded RNA may be subject to modification and therefore may carry at least one modified nucleoside selected form inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


In further aspect of the invention, there is provided a vector comprising a nucleic acid molecule, wherein the nucleic acid molecule is a RNA molecule as described above. In particular, the RNA molecule having a sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homologue thereof. In an embodiment, the vector is a recombinant vector comprising the double-stranded RNA molecule as described above. The vector may be viral-based vector derived from retrovirus, adeno-associated virus, adenovirus, or lentivirus. An ordinary skilled in the art would appreciate suitable approach to incorporate the RNA molecule of the present invention into a vector.


Still further, the present invention pertains to use of a nucleic acid molecule in the preparation of a medicament for treating CHD. The nucleic acid is a RNA molecule as described above including a functional variant or homologue thereof. It would also be appreciated that the RNA molecule of the present invention can be used as a small interfering RNA molecule to interfere the expression of certain genes in the target CHD, thereby to cause gene silencing, inhibition of apoptosis and injury, or the like to achieve the desired therapeutic effect.


Accordingly, the present invention provides a novel and effective approach for treating CHD from various origins by administration of a RNA molecule that is isolated or derived from a plant of the genus Panax, or in particular a RNA molecule comprising a sequence selected from SEQ ID NO: 1 to 232. Administration of said RNA molecule is also suitable for promoting the growth and proliferation of cardiomyocytes. The RNA molecules are found to be highly effective at promoting the growth and proliferation of cardiomyocytes in vitro.


The invention is now described in the following non-limiting examples.


EXAMPLES
Chemicals and Materials

Fresh roots of Panax ginseng C. A. Mey were collected from Fusong Town in the year of 2017 from Jilin Province, China. Cetrimonium bromide (CTAB) and sodium chloride were purchased from Kingdin Industrial Co., Ltd. (Hong Kong, China). Water-saturated phenol was purchased from Leagene Co., Ltd. (Beijing, China). Chloroform and ethanol were purchased from Anaqua Chemicals Supply Inc. Ltd. (U.S.A.). Isopentanol and guanidinium thiocyanate were purchased from Tokyo Chemical Industry CO., Ltd. (Japan). Tris-HCl and ethylenediaminetetraacetic acid (EDTA) were purchased from Acros Organics (U.S.A), low range ssRNA ladder was purchased from New England Biolabs (Beverly, Mass., U.S.A.). TRIzol® Reagent (Invitrogen), mirVana™ miRNA isolation kit, SYBR gold nucleic acid gel stain and gel loading buffer II were purchased from Thermo Fisher Scientific (U.S.A.). 40% acrylamide/bis solution (19:1), tris/borate/EDTA (TBE), ammonium persulphate (APS) and tetramethylethylenediamine (TEMED) were purchased from Biorad Laboratories Inc. (U.S.A). Rat cardiomyocyte cell line (H9C2) were purchased from ATCC (Manassas, Va., U.S.A.). Opti-MEM I Reduced Serum Media, Dulbecco's Modified Eagle Medium (DMEM), Glucose free Dulbecco's Modified Eagle Medium (glucose free DMEM), Fetal Bovine Serum (FBS), Penicillin-Streptomycin were purchased from Gibco (Life Technologies, Auckland, New Zealand). 3-(4,5-Dimethylthiazol-2-yl)-2,5-Diphenyltetrazolium Bromide (MTT) and DAPI was purchased from Sigma (St. Louis, Mo., U.S.A.). Mitochondrial viability stain solution was purchased from Abcam (Cambridge, England). Rhodamine Phalloidin was purchased from Cytoskeleton, Inc. (Denver, U.S.A.).


Example 1

Isolation of RNA molecules from a plant of genus Panax Roots of Panax ginseng C. A. Mey were freshly collected and immediately stored in liquid nitrogen until use. RNAs having a length of 200 nucleotides or below, i.e. small RNAs species, were extracted from Panax ginseng C. A. Mey by using a polysaccharase-aided RNA isolation (PARI) method, which method is described for the first time. Briefly, plant tissues were ground into a fine powder in liquid nitrogen and then homogenized in TRIzol reagent using a digital dispersing device (IKA, Germany). After fully lysed for 10 min at room temperature, an equal volume of chloroform was added and followed by centrifugation at 12,000×g for 15 min at 4° C. The supernatant was collected and precipitated by adding 1/25 volume of 5 M sodium chloride and 1.25 volume of cold absolute ethanol, and stored at −20° C. for 30 min. Then precipitation was hydrolyzed by polysaccharase, until the pellet was completely dissolved. The hydrolysate was mixed with 2×CTAB buffer, and extracted with an equal volume of phenol:chloroform:isopentanol (50:48:1) by vortexing vigorously. Phases were separated at 4° C. by centrifugation at 12,000×g for 15 min and the supernatant was extracted again as described above with chloroform:isopentanol (24:1). The supernatant was collected and mixed with an equal volume of 6 M guanidinium thiocyanate, followed by adding 100% ethanol to a final concentration of 55%. The mixture was passed through a filter cartridge containing a silica membrane, which immobilizes the RNAs. The filter was then washed for several times with 80% (v/v) ethanol solution, and finally all RNAs were eluted with a low ionic-strength solution or RNase-free water. The small RNA species were isolated and enriched by using a mirVana™ miRNA isolation kit following the manufacturer's instruction.


Further, the total tRNAs in the isolated small RNA species were separated by electrophoresis in 6% polyacrylamide TBE gels containing 8 M urea prepared according to the manufacturer's protocol (Biorad, U.S.A.). After staining with SYBR Gold nucleic acid gel stain, polyacrylamide gels were examined using a UV lamp and the region of gels containing total tRNAs were cut off by using a clean and sharp scalpel. FIG. 1 shows gel electrophoresis profiles of small RNA species from Panax ginseng C. A. Mey, including low range ssRNA Ladder, small RNA molecules, transfer RNAs and individual transfer RNA including tRNAGly(GCC), tRNAHis(GUG), tRNAMet(CAU). The band was sliced into small pieces and the total tRNAs were recovered from the gel by electroelution in a 3 kD molecular weight cut-off dialysis tubing (Spectrum, C.A.) at 100 V for 50 min in 1×TAE buffer. The eluents in the dialysis tubing were recovered and the total tRNAs were desalted and concentrated by using the mirVana™ miRNA isolation kit. The quality and purity of the RNA products were then confirmed using a Nanodrop Spectrophotometer (Thermo Scientific, U.S.A.) and Agilent 2100 Bioanalyzer (Agilent, U.S.A.).


The inventors then constructed the total tRNAs library and performed sequencing. Sequencing libraries were generated by using TruSeq small RNA Library Preparation Kit (Illumina, U.S.A.), followed by a round of adaptor ligation, reverse transcription and PCR enrichment. PCR products were then purified and libraries were quantified on the Agilent Bioanalyzer 2100 system (Agilent Technologies, U.S.A.). The library preparations were sequenced at the Novogene Bioinformatics Institute (Beijing, China) on an Illumina HiSeq platform using the 150 bp paired-end (PE150) strategy to generate over 15 million raw paired reads. U.S. Pat. No. 5,772,569 clean reads were obtained by removing low quality regions and adaptor sequences. FIG. 2 is a bar chart showing read length distribution of tRNAs. The tRNA genes were identified by using the tRNAscan-SE 2.0 program (http://lowelab.ucsc.edu/tRNAscan-SE/) and annotated by searching the Nucleotide Collection (nr/nt) database using Basic Local Alignment Search Tool (BLAST) program (https://blast.ncbi.nlm.nih.gov/Blast.cgi). 58 tRNA sequences from Panax ginseng C. A. Mey were identified and listed in Table 1.


Each of the tRNAs was then isolated from a mixture of small RNAs (<200 mer) from Panax ginseng C. A. Mey by immobilization of the target tRNAs onto the streptavidin-coated magnetic beads with specific biotinylated capture DNA probes. To bind specific tRNA molecules, a corresponded single stranded DNA oligonucleotide (20 to 45-mer) were synthesized, which was designed based on the sequence information of Illumina sequencing and should be complementary to a unique segment of the target tRNA. Cognate DNA probes were incubated with small RNA mixture for about 1.5 h in annealing buffer and allowed to hybridize to the targeted tRNA molecules in solution at the proper annealing temperatures that were generally 5° C. lower than the melting temperature (Tm). Streptavidin-coated magnetic beads were then added to the mixture and incubated for 30 min at the annealing temperatures. After the hybridized sequences are immobilized onto the magnetic beads via the streptavidin-biotin bond, the biotinylated DNA/tRNA coated beads were separated with a magnet for 1-2 min and washed 3-4 times in washing buffer at 40° C. The magnetic beads were resuspended to a desired concentration in RNase-free water and thereby to release the immobilized tRNA molecules by incubation at 70° C. for 5 min. Accordingly, the isolated and purified tRNA molecules of SEQ ID NO: 465 to 522 were obtained.


Example 2
Synthesis of RNA Molecules

The inventors designed and synthesized RNA molecules having a length of about 19 to 22 bp based on the 58 isolated tRNA sequences in Example 1. In particular, the tRNA sequences are considered to have at least 3 portions, namely a 5′-terminal portion (5′-t), a 3′-terminal portion (3′-t) and an anticodon portion. Each of the specifically designed RNA molecules contains any one of the portions. For instance, designed RNA molecules containing a 5′ terminal portion of the corresponding full-length tRNA sequence are referred as 5′-t group RNA molecules; designed RNA molecules containing a 3′ terminal portion of the corresponding full-length tRNA sequence are referred as 3′-t group RNA molecules; designed RNA molecules containing an anticodon portion of the corresponding full-length tRNA sequence are referred as anticodon group RNA molecules. The RNA molecules having a sense sequence selected from SEQ ID NO: 1 to SEQ ID NO: 232 and a complementary antisense sequence selected from SEQ ID NO: 233 to SEQ ID NO: 464, as shown in Table 2, were designed and synthesized by cleavage at different sites on the tRNA sequences in Table 1.


Example 3
Cardioprotective Effect of RNA Molecules on Cardiomyocytes

H9C2 cell lines were cultured in Dulbecco's Modified Eagle Medium (DMEM) containing 10% FBS and 1% penicillin/streptomycin at humidified atmosphere containing 5% CO2 at 37° C.


In the cell viability assay or mitochondrial viability assay, exponentially growing cells of H9C2 cell line were plated in 96-well microplate at a density of 5000 cells per well in 100 μL of culture medium and allowed to adhere for 24 h before treatment. For hypoxia, hypoxic treatment was achieved by exposing cells to KRB buffer (composition in: NaCl 115 mM, KCl 4.7 mM, CaCl2 2.5 mM, KH2PO4 1.2 mM, MgSO4 1.2 mM, NaHCO3 24 mM, HEPES 10 mM; pH 7.4) at 37° C. for 3 hr in an oxygen-free hypoxic chamber (Stem Cell Technologies, United States), serial concentrations of RNA molecules obtained in Example 1 were then added to the cells before hypoxic treatment. For hypoxia/reoxygenation (H/R), Hypoxic treatment was achieved by exposing cells in glucose-free DMEM under conditions of 94.9% N2/5% CO2/0.1% O2 for 12 hr at a hypoxystation (whitley H35 hypoxystation, Don Whitley Scientific Ltd., England), serial concentrations of RNA molecules obtained in Example 1 and 2 were then added to the cells and reoxygenation by incubating in the normoxic condition (95% air/5% CO2) at 37° C. for 6 hr. After hypoxia or hypoxia/reoxygenation, MTT solution (100 μL per well, 0.5 mg/mL solution) or mitochondrial viability stain solution (follow the manufacture's instruction) was added to each well and incubated for 4 h at 37° C. Subsequently, for cell viability assay, 150 μL dimethyl sulfoxide (DMSO) were added and the optical densities of the resulting solutions were calorimetrically determined at 570 nm using a SpectraMax Paradigm multi-mode microplate reader (Molecular Devices, Sunnyvale, Calif., U.S.A). For mitochondrial viability assay, fluorescence detected at 550 nM excitation and 590 nM emission using SpectraMax Paradigm multi-mode microplate reader. Dose-response curves were obtained and calculated by GraphPad Prism 6 (GraphPad, La Jolla, Calif., USA). Each experiment was carried out for three times and expressed as means±standard deviation.


With reference to FIG. 3A, H9C2 cells were treated with 300 nM RNA molecules of tRNAGly(GCC), tRNAHis(GUG), tRNAMet(CAU) and tRNALeu(CAA), i.e. SEQ ID NO: 465 to 468, and cultured under hypoxia before addition of MTT solution. The cell viability of these cells is compared to a control group and a hypoxia group. The results show that tRNAGly(GCC), tRNAMet(CAU) and tRNALe(CAA) are capable to promote the growth and proliferation of cardiomyocytes, indicating these RNA molecules can protect cardiomyocytes from hypoxic injury.


With reference to FIG. 3B, H9C2 cells were treated with 50 nM RNA molecules of tRNAGly(GCC), tRNAHis(GUG), tRNAMet(CAU) and tRNALeu(CAA), i.e. SEQ ID NO: 465 to 468, and cultured under hypoxia/reoxygenation before addition of MTT solution. The cell viability of these cells is compared to a control group and a H/R group. The results show that tRNAGly(GCC), tRNAHis(GUG) molecules are capable to promote the growth and proliferation of cardiomyocytes, indicating these RNA molecules can protect cardiomyocytes from hypoxia/reoxygenation (H/R) injury.



FIG. 4A shows the cardioprotective effect of tRNAHis(GUG), i.e. SEQ ID NO: 465, on H9C2 cells. Different concentrations of tRNAHis(GUG) were used, i.e. 100 nM, 50 nM, 25 nM, and 12.5 nM, and compared to a control group and a H/R group. It is shown that the tRNAHis(GUG) on cardiomyocytes in particular H9C2 cells exhibit significant cardioprotective effects in a dose-dependent manner.



FIG. 4B shows the cardioprotective effect of tRNAGly(GCC), i.e. SEQ ID NO: 466, on H9C2 cells. Different concentrations of tRNAGly(GCC) were used, i.e. 100 nM, 50 nM, 25 nM, and 12.5 nM, and compared to a control group and a H/R group. It is shown that the tRNAGly(GCC) on cardiomyocytes in particular H9C2 cells exhibit significant cardioprotective effects in a dose-dependent manner.


A comparative example of ginsenoside Rg1 implementation was used, and the results were shown in FIG. 4C.



FIG. 5A and FIG. 5B show the cardioprotective effect of RNA molecules synthesized in Example 2 on H9C2 cells, in particular those having sense sequence of SEQ ID NO: 1 to 40. The results show that the RNA molecules HC50 and HC83 are effective in promoting the growth and proliferation of cardiomyocytes in particular H9C2 cells in this example. In other words, RNA molecules HC50 and HC83 are useful in protecting cardiomyocytes from hypoxia/reoxygenation (H/R) injury.


The inventors then specifically determined the cardioprotective effect of RNA molecule HC50 and HC83 on H9C2 cells, at different concentrations, i.e. 900 nM, 300 nM, 30 nM, 3 nM and 0.3 nM. As shown in FIG. 6A, FIG. 6B, FIG. 7A and FIG. 7B, the results are compared to a control group and a H/R group. The results demonstrated that RNA molecule HC50 and HC83 has a dose-dependent protective effect against hypoxia/reoxygenation (H/R) injury.


Example 4
Cytoskeleton Protection of RNA Molecules on Cardiomyocytes

H9C2 cells were plated in p-slide 8 well plate (Ibidi GmbH, Germany) at a density of 10000 cells per well in 200 μL of culture medium and allowed to adhere for 24 h before treatment. Hypoxic treatment was achieved by exposing cells in glucose-free DMEM under conditions of 94.9% N2/5% CO2/0.1% O2 for 12 hr at a hypoxystation (whitley H35 hypoxystation, Don Whitley Scientific Ltd., England), serial concentrations of RNA molecules obtained in Example 2 were then added to the cells and reoxygenation by incubating in the normoxic condition (95% air/5% CO2) at 37° C. for 6 hr. After hypoxia/reoxygenation, cells were stained with Rhodamine Phalloidin and DAPI following the manufacturer's instruction. Images were acquired on a Leica TCS SP8 Confocal Microscopy with a 20× objective.


The inventors specifically determined the protective effects of RNA molecule HC50 and HC83 on H9C2 cell cytoskeleton at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM, 3 nM, and 0.3 nM. With reference to FIG. 8A and FIG. 8B, the results are compared to a control group and a H/R group. The cytoskeleton imaging showed RNA molecule HC50 and HC83 can significantly relieve cytoskeleton destruction of H9C2 cells caused by hypoxia/reoxygenation (H/R) injury in a dose-dependent manner.


Further, the inventors determined the protective effects of cholesterol-conjugated RNA molecule HC50 and HC83 on H9C2 cells at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM, 3 nM, and 0.3 nM. With reference to FIG. 9A and FIG. 9B, the results are compared to a control group and a H/R group. The results showed that cholesterol-conjugated RNA molecule HC50 and HC83 has a dose-dependent protective effect against hypoxia/reoxygenation (H/R) injury. The inventors also determined the protective effects of cholesterol-conjugated RNA molecule HC50 and HC83 on H9C2 cell cytoskeleton at different concentrations, i.e. 900 nM, 300 nM, 100 nM, 30 nM, 10 nM, 3 nM, and 0.3 nM. With reference to FIG. 10A and FIG. 10B, the results are compared to a control group and a H/R group. The cytoskeleton imaging showed cholesterol-conjugated RNA molecule HC50 and HC83 can significantly relieve cytoskeleton destruction of H9C2 cells caused by hypoxia/reoxygenation (H/R) injury in a dose-dependent manner.


The inventors further compared the results to a control group and H/R along with DharmaFECT4 treated group (H/R+ DharmaFECT4), as shown in FIG. 11A and FIG. 11B, RNA molecule HC50 and HC83 promoted the growth and proliferation of cardiomyocytes against hypoxia/reoxygenation (H/R) injury in a dose-dependent manner.


Based on the above results, it is found that the small tRNA molecules isolated or derived from Panax ginseng C. A. Mey are highly effective on cardioprotection in vitro.


The embodiments described above are some examples of the present invention. For ordinary technicians in this field, several deformations and improvements can be made on the premise of not separating from the creative idea of the present invention, which belong to the protection scope of the present invention.


Numbered Embodiments

The implementation is further described with reference to the following numbered embodiments:


1. A method of preventing or treating a subject suffering from heart disease comprising administering a transfer RNA molecule, a fragment derived from the transfer RNA molecule or a functional variant or homolog thereof, wherein the transfer RNA molecule is isolated from or derived from a plant of a genus Panax.


2. The method of embodiment 1, wherein the plant of the genus Panax is Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn.


3. The method of embodiment 1, wherein the transfer RNA molecule is a nucleic acid sequence selected from any one of SEQ ID NO: 465 to SEQ ID NO: 522.


4. The method of embodiment 1, wherein the fragment derived from the transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from any one of SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homolog thereof, and a complementary antisense sequence.


5. The method of embodiment 1, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 2 mer of 3′ overhang.


6. The method of embodiment 1, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 3′ cholesterol conjugation.


7. The method of embodiment 1, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


8. The method of embodiment 1, wherein the heart disease is selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.


9. A pharmaceutical composition for preventing or treating heart disease, wherein the pharmaceutical composition comprises an effective amount of a transfer RNA molecule, a fragment derived from the transfer RNA molecule or a functional variant or homolog thereof and a pharmaceutically tolerable vector, virus or excipient, wherein the transfer RNA molecule is isolated or derived from a plant of a genus Panax.


10. The pharmaceutical composition of embodiment 9, wherein the plant of the genus Panax is Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn.


11. The pharmaceutical composition of embodiment 9, wherein the transfer RNA molecule is a nucleic acid sequence selected from any one of SEQ ID NO: 465 to SEQ ID NO: 522.


12. The pharmaceutical composition of embodiment 9, wherein the fragment derived from the transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from any one of SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homolog thereof, and a complementary antisense sequence.


13. The pharmaceutical composition of embodiment 9, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 2 mer of 3′ overhang.


14. The pharmaceutical composition of embodiment 9, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 3′ cholesterol conjugation.


15. The pharmaceutical composition of embodiment 9, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.


16. The pharmaceutical composition of embodiment 9, wherein the heart disease is selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.


17. A recombinant vector comprising a double-stranded RNA molecule, wherein the double-stranded RNA molecule comprises a sense sequence selected from any one of SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homolog thereof, and a complementary antisense sequence.


18. The recombinant vector of embodiment 17, wherein the double-stranded RNA molecule comprises a 2 mer of 3′ overhang.


19. The recombinant vector of embodiment 17, wherein the double-stranded RNA molecule comprises a 3′ cholesterol conjugation.


20. The recombinant vector of embodiment 17, wherein the double-stranded RNA molecule comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methyl inosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.

Claims
  • 1. A method of preventing or treating a subject suffering from heart disease comprising administering a transfer RNA molecule, a fragment derived from the transfer RNA molecule or a functional variant or homolog thereof, wherein the transfer RNA molecule is isolated from or derived from a plant of a genus Panax.
  • 2. The method of claim 1, wherein the plant of the genus Panax is Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn.
  • 3. The method of claim 1, wherein the transfer RNA molecule is a nucleic acid sequence selected from any one of SEQ ID NO: 465 to SEQ ID NO: 522.
  • 4. The method of claim 1, wherein the fragment derived from the transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from any one of SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homolog thereof, and a complementary antisense sequence.
  • 5. The method of claim 1, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 2 mer of 3′ overhang.
  • 6. The method of claim 1, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 3′ cholesterol conjugation.
  • 7. The method of claim 1, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.
  • 8. The method of claim 1, wherein the heart disease is selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.
  • 9. A pharmaceutical composition for preventing or treating heart disease, wherein the pharmaceutical composition comprises an effective amount of a transfer RNA molecule, a fragment derived from the transfer RNA molecule or a functional variant or homolog thereof and a pharmaceutically tolerable vector, virus or excipient, wherein the transfer RNA molecule is isolated or derived from a plant of a genus Panax.
  • 10. The pharmaceutical composition of claim 9, wherein the plant of the genus Panax is Panax ginseng C. A. Mey, Panax notoginseng (Burkill) F. H. Chen or Panax quinquefolius Linn.
  • 11. The pharmaceutical composition of claim 9, wherein the transfer RNA molecule is a nucleic acid sequence selected from any one of SEQ ID NO: 465 to SEQ ID NO: 522.
  • 12. The pharmaceutical composition of claim 9, wherein the fragment derived from the transfer RNA molecule is a double-stranded RNA molecule comprising a sense sequence selected from any one of SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homolog thereof, and a complementary antisense sequence.
  • 13. The pharmaceutical composition of claim 9, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 2 mer of 3′ overhang.
  • 14. The pharmaceutical composition of claim 9, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises a 3′ cholesterol conjugation.
  • 15. The pharmaceutical composition of claim 9, wherein the transfer RNA molecule, the fragment derived from the transfer RNA molecule or the functional variant or homolog thereof comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methyl inosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.
  • 16. The pharmaceutical composition of claim 9, wherein the heart disease is selected from one or more of angina pectoris, myocardial infarction, myocardial ischemic injury, coronary heart disease, cardiac hypertrophy, and myocardial fibrosis.
  • 17. A recombinant vector comprising a double-stranded RNA molecule, wherein the double-stranded RNA molecule comprises a sense sequence selected from any one of SEQ ID NO: 1 to SEQ ID NO: 232 or a functional variant or homolog thereof, and a complementary antisense sequence.
  • 18. The recombinant vector of claim 17, wherein the double-stranded RNA molecule comprises a 2 mer of 3′ overhang.
  • 19. The recombinant vector of claim 17, wherein the double-stranded RNA molecule comprises a 3′ cholesterol conjugation.
  • 20. The recombinant vector of claim 17, wherein the double-stranded RNA molecule comprises at least one modified nucleoside selected from inosine, 1-methyladenosine, 2-methyladenosine, N6-methyladenosine, N6-isopentenyladenosine, 2′-O-methyladenosine, N6-acetyladenosine, 1-methylinosine, pseudouridine, dihydrouridine, or 2-methylthio-N6-methyladenosine.
Priority Claims (1)
Number Date Country Kind
201910784150.9 Aug 2019 CN national