Claims
- 1. A method for identifying multimeric ligand compounds which bind cellular receptors and possess multibinding properties which method comprises:
(a) identifying a ligand or a mixture of ligands wherein each ligand binds a cellular receptor and contains at least one reactive functionality; (b) identifying a library of linkers wherein each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the ligand or mixture of ligands identified in (a) with the library of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; and (d) assaying the multimeric ligand compounds produced in the library prepared in (c) above to identify multimeric ligand compounds possessing multibinding properties.
- 2. A method for identifying multimeric ligand compounds which bind cellular recptors and possess multibinding properties which method comprises:
(a) identifying a library of ligands wherein each ligand binds a cellular receptor and contains at least one reactive functionality; (b) identifying a linker or mixture of linkers wherein each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the library of ligands identified in (a) with the linker or mixture of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; and (d) assaying the multimeric ligand compounds produced in the library prepared in (c) above to identify multimeric ligand compounds possessing multibinding properties.
- 3. The method according to claim 1 or 2 wherein the preparation of the multimeric ligand compound library is achieved by either the sequential or concurrent combination of the two or more stoichiometric equivalents of the ligands identified in (a) with the linkers identified in (b).
- 4. The method according to claim 3 wherein the multimeric ligand compounds comprising the multimeric ligand compound library are dimeric.
- 5. The method according to claim 4 wherein the dimeric ligand compounds comprising the dimeric ligand compound library are heterodimeric.
- 6. The method according to claim 5 wherein the heterodimeric ligand compound library is prepared by sequential addition of a first and second ligand.
- 7. The method according to claim 1 or 2 wherein, prior to procedure (d), each member of the multimeric ligand compound library is isolated from the library.
- 8. The method according to claim 7 wherein each member of the library is isolated by preparative liquid chromatography mass spectrometry (LCMS).
- 9. The method according to claim 1 or claim 2 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 10. The method according to claim 9 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 11. The method according to claim 10 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 12. The method according to claim 1 or 2 wherein the ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands.
- 13. The method according to claim 12 wherein said reactive functionality is selected from the group consisting of carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates, and precursors thereof wherein the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
- 14. The method according to claim 1 or claim 2 wherein the multimeric ligand compound library comprises homomeric ligand compounds.
- 15. The method according to claim 1 or claim 2 wherein the multimeric ligand compound library comprises heteromeric ligand compounds.
- 16. A library of multimeric ligand compounds which may bind a cellular receptor and may possess multivalent properties which library is prepared by the method comprising:
(a) identifying a ligand or a mixture of ligands which bind a cellular receptor wherein each ligand contains at least one reactive functionality; (b) identifying a library of linkers wherein each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; and (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the ligand or mixture of ligands identified in (a) with the library of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands.
- 17. A library of multimeric ligand compounds which may bind a cellular receptor and may possess multivalent properties which library is prepared by the method comprising:
(a) identifying a library of ligands wherein each ligand binds a cellular receptor and contains at least one reactive functionality; (b) identifying a linker or mixture of linkers wherein each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; and (c) preparing a multimeric ligand compound library by combining at least two stoichiometric equivalents of the library of ligands identified in (a) with the linker or mixture of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands.
- 18. The library according to claim 16 or claim 17 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 19. The library according to claim 18 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 20. The library according to claim 19 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 21. The library according to claim 16 or 17 wherein the ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands.
- 22. The library according to claim 21 wherein said reactive functionality is selected from the group consisting of carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates, and precursors thereof wherein the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
- 23. The library according to claim 16 or claim 17 wherein the multimeric ligand compound library comprises homomeric ligand compounds.
- 24. The library according to claim 16 or claim 17 wherein the multimeric ligand compound library comprises heteromeric ligand compounds.
- 25. An iterative method for identifying multimeric ligand compounds capable of binding cellular receptors and possessing multibinding properties which method comprises:
(a) preparing a first collection or iteration of multimeric compounds which is prepared by contacting at least two stoichiometric equivalents of the ligand or mixture of ligands which target a cellular receptor with a linker or mixture of linkers wherein said ligand or mixture of ligands comprises at least one reactive functionality and said linker or mixture of linkers comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand wherein said contacting is conducted under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; (b) assaying said first collection or iteration of multimeric compounds to assess which if any of said multimeric compounds possess multibinding properties; (c) repeating the process of (a) and (b) above until at least one multimeric compound is found to possess multibinding properties; (d) evaluating what molecular constraints imparted or are consistent with imparting multibinding properties to the multimeric compound or compounds found in the first iteration recited in (a)-(c) above; (e) creating a second collection or iteration of multimeric compounds which elaborates upon the particular molecular constraints imparting multibinding properties to the multimeric compound or compounds found in said first iteration; (f) evaluating what molecular constraints imparted or are consistent with imparting enhanced multibinding properties to the multimeric compound or compounds found in the second collection or iteration recited in (e) above; (g) optionally repeating steps (e) and (f) to further elaborate upon said molecular constraints.
- 26. The method according to claim 25 wherein steps (e) and (f) are repeated from 2-50 times.
- 27. The method according to claim 26 wherein steps (e) and (f) are repeated from 5-50 times.
- 28. A multi-binding compound comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same of different, each of said ligands comprising a ligand domain capable of binding to a cellular receptor, with the following provisos:
(a) the ligand does not bind to a 5-HT1b receptor, a 5-HT1d receptor, a 5-HT1f receptor, a β2-adrenergic receptor, a M2 muscarinic receptor, a M3 muscarinic receptor or an opioid receptor; (b) when a first ligand is a peptide, then additional ligands do not bind to neurokinin 2 receptor or are not peptides; (c) when the multibinding compound comprises two ligands having a tetraazacrown capable of binding to a CCR5 or CXCR4 receptor, then the linker is not a polymethylene group; (d) when the multibinding compound comprises two ligands having a hexestrol moiety capable of binding to an estrogen receptor, then the linker is not a polymethylene group; (e) when the multibinding compound is capable of binding to an α-adrenergic receptor, then a ligand is not N,N′-(bis-(5-aminopentyl)cystamine (APC) or an analog thereof; (f) when a first ligand is l-(aryloxy)-2-hydroxypropanolamine moiety and is capable of binding to a β-adrenergic receptor, then a linker is not a polymethylene or poly(ethyleneoxide) group; (g) when a first ligand is 2-allylphenyl, 4-(2-methoxyethyl)phenyl, 1-naphthyl, or 4-methoxyphenyl moiety and is capable of binding to the β1-adrenergic receptor, then the linker is not a Jeffamine; (h) when a first ligand is a sLeX moiety and is capable of binding to a selectin, then the linker is not a polymethylene or poly(ethyleneoxide) group; (i) when a first ligand is a mannose moiety and is capable of binding to a selectin, then the linker is not a poly(arylene) group; (j) when a first ligand is a 2-(3,4-dihydroxybenzyl pyrrolidine) moiety and is capable of binding to a dopamine receptor and a linker is an alkylene group, then the second ligand is not a 2-(3,4-dihydroxybenzyl pyrrolidine) or an N-ethyl (3,4-dihydroxyphenethyl amine) moiety; and (k) when a first ligand is a 2-phenylbenzimidazole moiety and is capable of binding a dopamine receptor and a linker is an alkylene, alkenylene or arylalkylene group then a second ligand is not a 2-phenylbenzimidazole or a benzimidazole moiety.
- 29. A multi-binding compound represented by formula I:
- 30. The multibinding compound of claim 2 wherein q is less that p.
- 31. A pharmaceutical composition comprising a pharmaceutically acceptable excipient and an effective amount of a multi-binding compound or a pharmaceutically acceptable salt thereof comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to a cellular receptor mediating mammalian or avian pathologic conditions thereby inhibiting the pathologic condition; with the following provisos:
(a) the ligand does not bind to a 5-HT1b receptor, a 5-HT1d receptor, a 5-HT1f receptor, a β2-adrenergic receptor, a M2 muscarinic receptor, a M3 muscarinic receptor or an opioid receptor; (b) when a first ligand is a peptide, then additional ligands do not bind to neurokinin 2 receptor or are not peptides; (c) when the multibinding compound comprises two ligands having a tetraazacrown capable of binding to a CCR5 or CXCR4 receptor, then the linker is not a polymethylene group; (d) when the multibinding compound comprises two ligands having a hexestrol moiety capable of binding to an estrogen receptor, then the linker is not a polymethylene group; (e) when the multibinding compound is capable of binding to an α-adrenergic receptor, then a ligand is not N,N′-(bis-(5-aminopentyl)cystamine (APC) or an analog thereof; (f) when a first ligand is 1-(aryloxy)-2-hydroxypropanolamine moiety and is capable of binding to an P— adrenergic receptor, then a linker is not a polymethylene or poly(ethyleneoxide) group; (g) when a first ligand is 2-allylphenyl, 4-(2-methoxyethyl)phenyl, 1-naphthyl, or 4-methoxyphenyl moiety and is capable of binding to the 1-adrenergic receptor, then the linker is not a Jeffamine; (h) when a first ligand is a sLeX moiety and is capable of binding to a selectin, then the linker is not a polymethylene or poly(ethyleneoxide) group; (i) when a first ligand is a mannose moiety and is capable of binding to a selectin, then the linker is not a poly(arylene) group; (j) when a first ligand is a 2-(3,4-dihydroxybenzyl pyrrolidine) moiety and is capable of binding to a dopamine receptor and a linker is an alkylene group, then the second ligand is not a 2-(3,4-dihydroxybenzyl pyrrolidine) or an N-ethyl (3,4-dihydroxyphenethyl amine) moiety; and (k) when a first ligand is a 2-phenylbenzimidazole moiety and is capable of binding a dopamine receptor and a linker is an alkylene, alkenylene or arylalkylene group then a second ligand is not a 2-phenylbenzimidazole or a benzimidazole moiety.
- 32 A pharmaceutical composition comprising a pharmaceutically acceptable excipient and an effective amount of a multi-binding compound represented by formula I:
- 33. A method for treating a mammalian or avian pathologic condition mediated by cellular receptors which method comprises administering to said marnmal or bird an effective amount of a pharmaceutical composition comprising a pharmaceutically acceptable excipient and a multi-binding compound or a pharmaceutically acceptable salt thereof comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to a cellular receptor mediating mammalian or avian pathologic conditions;
- 34. A method for treating a mammalian or avian pathologic condition mediated by cellular receptors which method comprises administering to said mammal or bird an effective amount of a pharmaceutical composition comprising a pharmaceutically acceptable excipient and a multi-binding compound represented by formula I:
- 35. A method for modulating the biological processes/functions of a cell which method comprises contacting said cell with a multi-binding compound or a pharmaceutically acceptable salt thereof under conditions sufficient to modulate one or more biological processes/functions of said cell wherein said multi-binding compound comprises 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to a cellular receptor;
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims priority to U.S. Provisional Application Serial No. 60/092,938, filed Jul. 15, 1998 and U.S. Provisional Application Serial No. 60/088,466, filed Jun. 8, 1998, both of which are incorporated herein in their entirety by reference.
Provisional Applications (2)
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Number |
Date |
Country |
|
60092938 |
Jul 1998 |
US |
|
60088466 |
Jun 1998 |
US |
Continuations (2)
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Number |
Date |
Country |
Parent |
09493462 |
Jan 2000 |
US |
Child |
10015534 |
Dec 2001 |
US |
Parent |
09327904 |
Jun 1999 |
US |
Child |
09493462 |
Jan 2000 |
US |