Methods for measuring enhancement in the quality of life of an animal

Information

  • Patent Grant
  • 8669211
  • Patent Number
    8,669,211
  • Date Filed
    Tuesday, July 24, 2012
    12 years ago
  • Date Issued
    Tuesday, March 11, 2014
    10 years ago
Abstract
A method to measure enhancement in the quality of life of an animal fed a super senior pet food composition comprising quantitating the gene expression levels of one or more genes in said animal and comparing said levels in the animal to levels in the animal prior to administration of said super senior pet food composition. A method to enhance the quality of life of an animal by modulating the expression level of one or more genes in said animal in order to mimic the pattern of expression seen in vivo after administration of a super senior pet food composition.
Description
FIELD OF THE INVENTION

The present invention relates generally to methods for enhancing the quality of life of an animal and particularly to using food compositions containing omega-3 polyunsaturated fatty acids for enhancing the quality of life of a senior or super senior animal.


BACKGROUND OF THE INVENTION

Companion animals such as dogs and cats frequently require differing diets depending on their life stage (age), size, body composition, and breed. Both dog and cat nutrient requirements can be separated into three different life-stages, based on age: growing dogs (or cats), adult dogs (or cats), and senior dogs (or cats). The latter category, senior dogs (or cats), can be further separated into two stages, which include senior (or mature adult) and super senior (or geriatric). Dogs are further separated into different categories for regular breed dogs versus large-breed dogs.


Essential fatty acids, consisting of omega-3 and omega-6 polyunsaturated fatty acids, are critical nutrients for the health of an animal. These nutrients, however, either cannot be made by animals or cannot be made in sufficient amounts to elicit benefits and therefore must be consumed in an animal's diet. See, e.g., Hornstra, G., et al., “Essential fatty acids in pregnancy and early human development”, Eur. J. Obs. & Gyn. and Reprod. Biology, 61:57-62 (1995). It has previously been postulated that Docosahexaenoic Acid (“DHA”), an omega-3 polyunsaturated fatty acid, is effective in increasing the maze-learning ability and brain functions in aged mice. See, Lim, S.-Y., “Intakes of dietary docosahexaenoic acid ethyl ester and egg phosphatidylcholine improve maze-learning ability in young and old mice”, J. Nutr., 130:1629-1632 (2000).


Rogers discusses the theory of the potential use of antioxidants to slow the deterioration of cognitive function, particularly in the elderly. See Rogers, P., “A healthy body, a healthy mind: long-term impact of diet on mood and cognitive function”, Proceedings of the Nutrition Society, 60:135-143 (2001).


Despite the studies and developments relating to improving cognitive abilities, there continues to be a need for methods for enhancing the quality of life of senior animals, as measured by, e.g., enhanced alertness, improved vitality, cartilage protection, maintenance of muscle mass, enhanced digestibility, and improved skin and pelage quality in senior and super senior animals. As previously reported, the super senior pet food composition described herein may be administered to achieve this result. Additionally, we now report herein our surprising discovery that the enhanced quality of life of senior and super senior animals achieved by the administration of the pet food compositions disclosed herein is reflected at the genomic level. Specifically, as described in detail in the Examples below, gene chip data indicate that the expression of genes that encode proteins associated with several biological pathways such as blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport are modified, i.e., in general, the majority are beneficially altered through administration to the animal of the super senior pet food compositions described herein.


SUMMARY OF THE INVENTION

The invention provides methods for improving the quality of life of senior and super senior animals by feeding the animal a composition comprising at least about 9% by weight protein, at least about 5% by weight fat, and at least about 0.05% by weight of at least one omega-3 polyunsaturated fatty acid.


In one embodiment, the method comprises feeding the animal an amount of a composition effective to enhance the animal's quality of life, wherein enhanced quality of life is evidenced by improvement in one or more characteristics selected from the group consisting of alertness, vitality, cartilage protection, muscle mass maintenance, digestibility, and skin and pelage quality.


In another embodiment, the method comprises feeding the animal a composition comprising at least one omega-3 polyunsaturated fatty acid selected from the group consisting of docosahexaenoic acid (“DHA”) and eicosapentaenoic acid (“EPA”). In an additional embodiment, the method comprises feeding the animal a composition further comprising at least one antioxidant and at least one nutrient selected from the group consisting of choline, manganese, methionine, cysteine, L-carnitine, lysine, and mixtures thereof.


In one embodiment, the method comprises feeding the animal an amount of a composition effective to improve or enhance the animal's quality of life, wherein enhanced quality of life is evidenced by improvement in one or more biological pathways selected from the group consisting of blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport.


In another embodiment, the method comprises feeding the animal an amount of a composition effective to enhance the animal's quality of life, wherein enhanced quality of life is evidenced by a change in expression of one or more genes which encode proteins associated with or related to biological pathways selected from the group consisting of blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport.


In yet another embodiment, the invention relates to a method to treat an animal suffering from a disorder or disease associated with or related to a biological pathway selected from the group consisting of blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport comprising administering to said animal a composition disclosed herein. In one embodiment, said composition comprises at least about 9% by weight protein, at least about 5% by weight fat, and at least about 0.05% by weight of at least one omega-3 polyunsaturated fatty acid. In a further embodiment said composition comprises at least one omega-3 polyunsaturated fatty acid selected from the group consisting of docosahexaenoic acid (“DHA”) and eicosapentaenoic acid (“EPA”). In yet an additional embodiment, the composition further comprises at least one antioxidant and at least one nutrient selected from the group consisting of choline, manganese, methionine, cysteine, L-carnitine, lysine, and mixtures thereof.


In another embodiment, the invention relates to methods of measuring or characterizing the enhancement in the quality of life of an animal, particularly a senior or super senior animal, fed a composition described herein by quantitating the gene expression levels of one or more genes selected from a group consisting of those disclosed in Tables 5-14 in said animal and comparing said levels in the animal to levels in the animal prior to administration of the feed composition.


In a further embodiment, the invention relates to methods to enhance the quality of life of an animal by modulating the expression level of one or more genes listed on Tables 5-14 (i.e., up or down regulation as indicated therein) in an animal in order to mimic the pattern of expression seen in vivo after administration of the pet food compositions of the present invention. It is also contemplated herein that modulating the expression levels of these genes may have therapeutic value with regard to the treatment of diseases or disorders associated with the various biological pathways.


The invention also relates to methods to identify an animal that might benefit from feeding a composition as disclosed herein comprising measuring the gene expression levels of any one or more genes listed in Tables 5-14 in said animal and comparing said levels to the gene expression levels seen in Tables 5-14 wherein an animal with levels different than those seen in Tables 5-14 would be identified as potentially benefiting from feeding a composition of the present invention.


In yet another aspect of the present invention there are provided assay methods and kits comprising the components necessary to detect expression of polynucleotides encoding the genes disclosed herein, or levels of encoded protein, or fragments thereof, in body tissue samples derived from an animal, such kits comprising, e.g., antibodies that bind to said polypeptides, or to fragments thereof, or oligonucleotide probes that hybridize with said polynucleotides. In a preferred embodiment, such kits also comprise instructions detailing the procedures by which the kit components are to be used.


Other and further objects, features, and advantages of the present invention will be readily apparent to those skilled in the art.







DETAILED DESCRIPTION OF THE INVENTION
Definitions

It is contemplated that the invention described herein is not limited to the particular methodology, protocols, and reagents described as these may vary. It is also to be understood that the terminology used herein is for the purpose of describing particular embodiments only, and is not intended to limit the scope of the present invention in any way.


Unless defined otherwise, all technical and scientific terms used herein have the same meanings as commonly understood by one of ordinary skill in the art to which this invention belongs. Although any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention, the preferred methods, devices and materials are now described. All publications mentioned herein are incorporated by reference for the purpose of describing and disclosing the materials and methodologies that are reported in the publication which might be used in connection with the invention.


In practicing the present invention, many conventional techniques in molecular biology may be used. These techniques are well known and are explained in, for example, Current Protocols in Molecular Biology, Volumes I, II, and III, 1997 (F. M. Ausubel ed.); Sambrook et al., 1989, Molecular Cloning: A Laboratory Manual, Second Edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.; DNA Cloning: A Practical Approach, Volumes I and II, 1985 (D. N. Glover ed.); Oligonucleotide Synthesis, 1984 (M. L. Gait ed.); Nucleic Acid Hybridization, 1985, (Hames and Higgins); Transcription and Translation, 1984 (Hames and Higgins eds.); Animal Cell Culture, 1986 (R. I. Freshney ed.); Immobilized Cells and Enzymes, 1986 (IRL Press); Perbal, 1984, A Practical Guide to Molecular Cloning; the series, Methods in Enzymology (Academic Press, Inc.); Gene Transfer Vectors for Mammalian Cells, 1987 (J. H. Miller and M. P. Calos eds., Cold Spring Harbor Laboratory); and Methods in Enzymology Vol. 154 and Vol. 155 (Wu and Grossman, and Wu, eds., respectively).


As used herein and in the appended claims, the singular forms “a”, “an”, and “the” include plural reference unless the context clearly dictates otherwise.


The terms “senior” or “mature adult” refers to the life-stage of an animal. For small or regular breed canines, the “senior” life stage is from about 7 to about 10 years of age. For felines, the “senior” life stage is from about 7 to about 12 years of age. For large breed canines, over 5 years of age represents “super senior” as described below.


The terms “super senior” or “geriatric” refers to a specific life-stage of an animal. For small or regular breed canines, the super senior stage is any age greater than 10 years of age. For large breed canines, the super senior stage is any age greater than 5 years of age. For felines, the super senior stage is any age greater than 12 years of age.


The term “large breed” canine means a canine that weighs more than 55 pounds when an adult.


The term “regular breed” canine means a canine that weighs less than 55 pounds when an adult.


The term “small breed” canine means a canine that weighs less than 20 pounds when an adult.


The term “super senior pet food composition” refers to any and all of the pet food compositions disclosed herein.


The term “carbohydrate” as used herein includes polysaccharides (e.g., starches and dextrins) and sugars (e.g. sucrose, lactose, maltose, glucose, and fructose) that are metabolized for energy when hydrolyzed. Examples of carbohydrates suitable for inclusion in the compositions disclosed herein include, but are not limited to, corn, grain sorghum, wheat, barley, and rice.


The term “antioxidant” means a substance that is capable of reacting with free radicals and neutralizing them. Illustrative examples of such substances include beta-carotene, selenium, coenzyme Q10 (ubiquinone), luetin, tocotrienols, soy isoflavones, S-adenosylmethionine, glutathione, taurine, N-acetylcysteine, vitamin E, vitamin C, lipoic acid and L-carnitine. Examples of foods containing useful levels of one or more antioxidants include but are not limited to ginkgo biloba, green tea, broccoli, citrus pulp, grape pomace, tomato pomace, carrot spinach, and a wide variety of fruit meals and vegetable meals. It will be understood by one of skill in the art that while units of antioxidants may be provided herein as “ppm”, appropriate amounts of antioxidants may also be provided as “IU/kg” where appropriate and customary for a given antioxidant such as, e.g., Vitamin E.


The terms “beneficial change” in gene expression, or gene expression may be “beneficially altered” and like terms refer to a modification in gene expression (e.g., up or down regulation of mRNA levels) such that levels of proteins encoded by the genes may be correspondingly modified such that an associated biological pathway may be more likely to function normally and with less tendency to reflect pathological changes in the pathway that, e.g., may be typical of a super senior animal. Generally, beneficial changes in gene expression relate to improved health and/or reduced propensity for disease in an animal. As used herein, measuring differences in gene expression “levels” and like terms refer to, e.g., characterizing whether expression of a gene is up or down regulated in an animal compared to a control level.


As used herein, “improving” or “enhancing” the quality of life of an animal refers to as an improvement or enhancement in one or more characteristics selected from a group consisting of alertness, vitality, protection of cartilage, maintenance of muscle mass, digestibility, and skin and pelage quality. Additionally, improvement/enhancement in blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport are also contemplated.


An “improvement” or an “enhancement” in a characteristic or biological pathway refers to a modification in said characteristic or biological pathway such that there is a tendency for the characteristic or pathway to appear and/or function normally and with less tendency to reflect pathological changes in the characteristic or pathway that, e.g., may be typical of a super senior animal.


As used herein, methods to “treat” an animal suffering from a disease or disorder is also meant to encompass methods to prevent and/or to ameliorate the disease or disorder as well.


The Invention

The present invention provides methods for improving or enhancing the quality of life of a senior or super senior animal. The methods comprise feeding the animal a composition comprising at least about 9% by weight protein, at least about 5% by weight fat, and at least about 0.05% by weight omega-3 polyunsaturated fatty acid. The methods are useful for enhancing alertness, improving vitality, protecting cartilage, maintaining muscle mass, enhancing digestibility, and improving skin and pelage quality in a senior or super senior animal. The methods are also useful for improving in an animal one or more biological pathways selected from the group consisting of blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and the electron transport pathway, such improvements also being reflected in overall beneficial changes at the genomic level. Methods for treating animals suffering from disorders or diseases associated with or related to these biological pathways comprising administering the compositions of the present invention are also contemplated herein.


Without being bound by theory, the benefits of the invention may be the result of physiological effects from the addition of omega-3 polyunsaturated fatty acids to a senior or super senior animal's diet. Similarly, the antioxidants, choline, and other nutrients may play a role in enhancing a senior or super senior animal's quality of life.


Although the methods of the present invention may improve an animal's quality of life by enhancing all of the above described characteristics or improving all of the described biological pathways, it is not necessary to demonstrate substantial improvements in each of the characteristics or pathways to achieve the “enhanced quality of life” as defined herein.


When the compositions are administered to a senior or super senior animal, the animal experiences an enhanced quality of life, e.g., exhibits or experiences one or more of enhanced alertness, improved vitality, protected cartilage, maintained muscle mass, enhanced digestibility, improved skin and pelage quality, as well as improvements in e.g., blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and the electron transport pathway as indicated by overall beneficial changes at the genomic level. Methods for determining these measurements of quality of life are known to skilled artisans. For example, alertness can be measured by various means, including an analysis of metabolism and antioxidant markers, as well as through clinical studies with follow-up questions to participating pet owners. Potential metabolism markers may include ghrelin, GLP-1, thyroid hormone, and/or growth hormone. Potential markers of antioxidant status may include serum vitamin E, ORAC, glutathione peroxidase, alkanels, and/or cell damage indicators. Further, vitality can be measured by various means, including an analysis of metabolism and antioxidant markers, as well as through clinical studies with follow-up questions to participating pet owners. Similarly, cartilage protection can be measured by various means, including an analysis of arthritis biomarkers. Potential arthritis biomarkers may include type II collagen synthesis, matrix metaloproteinase, osteocalcin, alkaline phosphatase activity, COMP, and fragments of cartilage damage. Muscle mass maintenance can be measured by various means, including an analysis of body composition and digestibility can be measured by various means, including clinical studies with follow-up questions to participating pet owners and animal feeding to determine the percentage of nutrients digested. Skin and pelage quality can be measured by various means, including clinical studies with follow-up questions to participating pet owners. Additionally, as discussed above, improvements in quality of life is also reflected at the genomic level, as evidenced by gene chip data which indicate beneficial changes on the expression of a majority of genes associated with various important biological pathways including blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and protection and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and the electron transport pathway. The identities of these genes are provided in the Examples below.


The methods of the invention are useful for enhancing the quality of life of humans and animals, including primates (e.g., monkeys, chimpanzees, etc.), companion animals (e.g., dogs, cats, horses, etc.), farm animals (e.g., goats, sheep, swine, cattle, etc.), laboratory animals (e.g., mice, rats, etc.), birds (e.g., domestic birds such as canaries, parrots, etc. and commercial birds such as chickens, ducks, turkeys, etc.), rodents (e.g., hamsters, guinea pigs, gerbils, rabbits, hedgehogs, ferrets, chinchillas, etc.), and wild, exotic, and zoo animals (e.g., wolves, bears, deer, etc.). In various embodiments, the animal is a cat, a dog, or a horse.


The compositions of the present invention are designed to enhance digestibility and improve chewability. Canine and feline foods are typically formulated based on life stage (age), size, body composition, and breed. Thus, some embodiments of the present invention include compositions that are formulated to address specific nutritional differences between regular or small breed dogs, large breed dogs, and cats.


The invention provides methods utilizing a variety of compositions containing at least one omega-3 polyunsaturated fatty acid. The compositions include foods, supplements, treats, and toys (typically chewable and consumable toys). The methods also provide the compositions to the designated animals over a period of time that is long enough to effectuate the improved quality of life. In one embodiment, the method provides the animal with a composition for at least thirty days.


The compositions for use in the methods of the present invention generally have an omega-3 polyunsaturated fatty acid content of at least about 0.02% (or from about 0.05% to about 10%, or from about 0.1% to about 6%) by weight on a dry matter basis. In some embodiments, the omega-3 polyunsaturated fatty acid is DHA. In other embodiments, the omega-3 polyunsaturated fatty acid is EPA. In still other embodiments, the omega-3 polyunsaturated fatty acid comprises a mixture of DHA and EPA.


In some embodiments, the composition containing omega-3 polyunsaturated fatty acid is a food. Although both liquid and solid foods are provided, solid foods are typically preferred. Foods include both dry foods and wet foods. Some of the non-polyunsaturated fatty acid components of the food, and their preferred proportions, include those listed in Table 1.










TABLE 1





Compo-
Proportion of the composition (% of dry weight of


nent
composition or parts per million)







Protein
from about 9% to about 55%, or from about 18% to about



30%, or from about 33% to about 55% or from about 18% to



about 20% or from about 33% to about 36%


Fat
from about 7% to about 35%, or from about 18% to about



35%, or from about 7% to about 24%, or from about 14% to



about 24%, or from about 14% to about 16% or from about



18% to about 24%


Anti-
from about 0 ppm to about 7500 ppm, or from about 0.05 ppm


oxidant
to about 3600 ppm, or from about 250 to about 3600, or from



about 250 ppm to about 1650 ppm, or from about 5 ppm to



about 225 ppm, or from about 0.05 ppm to about 2.4 ppm









In one embodiment, the methods of this invention comprise feeding a super senior animal a composition in an amount effective to enhance the animal's quality of life. Such compositions generally comprise:

    • (a) 0.02% (or from about 0.05% to about 10%, or from about 0.1% to about 6%) at least one omega-3 polyunsaturated fatty acid, and
    • (b) at least one of the following:
      • (i) from about 10% to about 55% (or from about 18% to about 30%, or from about 33% to about 55% or from about 18% to about 20% or from about 33% to about 36%) protein,
      • (ii) from about 7% to about 35% (or from about 18% to about 35%, or from about 7% to about 24%, or from about 14% to about 24%, or from about 14% to about 16% or from about 18% to about 24%) fat, and
      • (iii) at least about 0.05 (or from about 0.05 ppm or IU/kg to about 7500 ppm or IU/kg, or from about 250 ppm or IU/kg to about 3600 ppm or IU/kg, or from about 250 ppm or IU/kg to about 1650 ppm or IU/kg, or from about 5 ppm or IU/kg to about 225 ppm or IU/kg, or from about 0.05 ppm or IU/kg to about 2.4 ppm or IU/kg) antioxidant.


In another embodiment, the methods of this invention comprise feeding a super senior regular or small breed canine a composition in an amount effective to enhance the canine's quality of life. The composition generally comprises:

    • (a) at least one of the following:
      • (i) at least about 0.02% (or from about 0.02% to about 0.3%, or from about 0.05% to about 0.3%, or from about 0.05% to about 0.2%) DHA, and
      • (ii) at least about 0.1% (or from about 0.1% to about 0.5%, or from about 0.2% to about 0.5%, or from about 0.2% to about 0.3%) EPA,
    • (b) at least about 9% (or from about 9% to about 30%, or from about 18% to about 30%, or from about 18% to about 20%) protein,
    • (c) at least about 7% (or from about 7% to about 24%, or from about 14% to about 24%, or from about 14% to about 16%) fat, and
    • (d) at least one of the following:
      • (i) at least about 250 IU/kg (or from about 250 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1000 IU/kg) vitamin E,
      • (iv) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 100 ppm to about 500 ppm, or from about 100 ppm to about 301 ppm) vitamin C,
      • (v) at least about 600 ppm (or from about 600 ppm to about 2400 ppm, or from about 1260 ppm to about 2400 ppm, or from about 1260 ppm to about 1545 ppm) taurine,
      • (vi) at least about 50 ppm (or from about 50 ppm to about 200 ppm, or from about 100 to about 160, or from about 100 to about 155) lipoic acid, and
      • (vii) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 200 ppm to about 500 ppm, or from about 200 ppm to about 350 ppm) carnitine.


In another embodiment, the methods of this invention comprise feeding a super senior large breed canine a composition in an amount effective to enhance the canine's quality of life. The compositions generally comprise:

    • (a) at least one of the following:
      • (i) at least about 0.02% (or from about 0.02% to about 0.3%, or from about 0.05% to about 0.3%, or from about 0.05% to about 0.2%) DHA, and
      • (ii) at least about 0.1% (or from about 0.1% to about 0.5%, or from about 0.2% to about 0.5%, or from about 0.2% to about 0.3%) EPA,
    • (b) at least about 9% (or from about 9% to about 30%, or from about 18% to about 30%, or from about 18% to about 20%) protein,
    • (c) at least about 7% (or from about 7% to about 24%, or from about 14% to about 24%, or from about 14% to about 16%) fat, and
    • (d) at least one of the following:
      • (i) at least about 250 IU/kg (or from about 250 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1000 IU/kg) vitamin E,
      • (viii) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 100 ppm to about 500 ppm, or from about 100 ppm to about 301 ppm) vitamin C,
      • (ix) at least about 600 ppm (or from about 600 ppm to about 2400 ppm, or from about 1260 ppm to about 2400 ppm, or from about 1260 ppm to about 1575 ppm) taurine, and
      • (x) at least about 50 ppm (or from about 50 ppm to about 200 ppm, or from about 100 to about 160, or from about 100 to about 155) lipoic acid, and
      • (xi) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 200 ppm to about 500 ppm, or from about 200 ppm to about 350 ppm) carnitine.


In another embodiment, the methods of this invention comprise feeding a super senior feline a composition in an amount effective to enhance the feline's quality of life. The compositions generally comprise:

    • (a) at least one of the following:
      • (i) at least about 0.05% (or from about 0.05% to about 0.30%, or from about 0.1% to about 0.30%, or from about 0.1% to about 0.2%) DHA, and
      • (ii) at least about 0.1% (or from about 0.1% to about 0.5%, or from about 0.2% to about 0.5%, or from about 0.2% to about 0.3%) EPA,
    • (b) at least about 15% (or from about 15% to about 55%, or from about 30% to about 55%, or from about 33% to about 36%) protein,
    • (c) at least about 9% (or from about 9% to about 35%, or from about 18% to about 35%, or from about 18% to about 24%) fat, and
    • (d) at least one of the following:
      • (i) at least about 250 IU/kg (or from about 250 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1100 IU/kg) vitamin E,
      • (xii) at least about 50 ppm (or from about 50 ppm to about 300 ppm, or from about 100 ppm to about 300 ppm, or from about 100 ppm to about 200 ppm) vitamin C,
      • (xiii) at least about 1100 ppm (or from about 1100 ppm to about 3500 ppm, or from about 2300 ppm to about 3500 ppm, or from about 2300 ppm to about 2350 ppm) taurine, and
      • (xiv) at least about 200 ppm (or from about 200 to about 750 ppm, or from about 400 ppm to about 750 ppm, or from about 400 to about 525 ppm) carnitine, and
      • (xv) at least about 0.05% (or from about 0.05% to about 0.6%, or from about 0.1% to about 0.6%, or from about 0.1% to about 0.4%) cystine.


In another embodiment, the methods of this invention comprise feeding a super senior animal a composition in an amount effective to enhance the animal's alertness and vitality. The composition generally comprises:

    • (a) 0.02% (or from about 0.05% to about 10%, or from about 0.1% to about 6%) at least one omega-3 polyunsaturated fatty acid, and
    • (b) at least one of the following:
      • (xvi) from about 10% to about 55% (or from about 18% to about 30%, or from about 33% to about 55% or from about 18% to about 20% or from about 33% to about 36%) protein,
      • (xvii) from about 7% to about 35% (or from about 18% to about 35%, or from about 7% to about 24%, or from about 14% to about 24%, or from about 14% to about 16% or from about 18% to about 24%) fat,
      • (xviii) at least about 0.05 (or from about 0.05 ppm to about 7500 ppm, or from about 250 to about 3600, or from about 250 ppm to about 1650 ppm, or from about 5 ppm to about 225 ppm, or from about 0.05 ppm to about 2.4 ppm) antioxidant, and
      • (xix) at least about 1000 ppm (or from about 1000 ppm to about 5000 ppm, from about 3300 ppm to about 5000 ppm, or from about 2000 ppm to about 3000 ppm, or from about 3000 ppm to about 4000 ppm) choline.


In another embodiment, the methods of this invention comprise feeding a super senior regular or small breed canine a composition in an amount effective to enhance the canine's alertness and vitality. The composition generally comprises:

    • (a) at least one of the following:
      • (i) at least about 0.02% (or from about 0.02% to about 0.3%, or from about 0.05% to about 0.3%, or from about 0.05% to about 0.2%) DHA, and (ii) at least about 0.1% (or from about 0.1% to about 0.5%, or from about 0.2% to about 0.5%, or from about 0.2% to about 0.3%) EPA,
    • (b) at least about 9% (or from about 9% to about 30%, or from about 18% to about 30%, or from about 18% to about 20%) protein,
    • (c) at least about 7% (or from about 7% to about 24%, or from about 14% to about 24%, or from about 14% to about 16%) fat,
    • (d) at least one of the following:
      • (i) at least about 250 IU/kg (or from about 250 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1000 IU/kg) vitamin E,
      • (xx) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 100 ppm to about 500 ppm, or from about 100 ppm to about 301 ppm) vitamin C,
      • (xxi) at least about 600 ppm (or from about 600 ppm to about 2400 ppm, or from about 1260 ppm to about 2400 ppm, or from about 1260 ppm to about 1545 ppm) taurine, and
      • (xxii) at least about 50 ppm (or from about 50 ppm to about 200 ppm, or from about 100 to about 160, or from about 100 to about 155) lipoic acid, and
      • (xxiii) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 200 ppm to about 500 ppm, or from about 200 ppm to about 350 ppm) carnitine,
    • (e) at least about 1000 ppm (or from about 1000 ppm to about 3200 ppm, or from about 2000 ppm to about 3200 ppm, or from about 2000 ppm to about 2500 ppm) choline,
    • (f) at least about 50 ppm (or from about 50 ppm to about 150 ppm, or from about 100 ppm to about 150 ppm, or from about 100 ppm to about 110 ppm) manganese, and
    • (g) at least about 0.4% (or from about 0.4% to about 2%, or from about 0.9% to about 2%, or from about 0.9% to about 1.2%) lysine, and
    • (h) at least about 0.4% to about 1.5% methionine.


In another embodiment, the methods of this invention comprise feeding a super senior large breed canine a composition in an amount effective to enhance the canine's alertness and vitality. The composition generally comprises:

    • (a) at least one of the following:
      • (i) at least about 0.02% (or from about 0.02% to about 0.3%, or from about 0.05% to about 0.3%, or from about 0.05% to about 0.2%) DHA, and
      • (ii) at least about 0.1% (or from about 0.1% to about 0.5%, or from about 0.2% to about 0.5%, or from about 0.2% to about 0.3%) EPA,
    • (b) at least about 9% (or from about 9% to about 30%, or from about 18% to about 30%, or from about 18% to about 20%) protein,
    • (c) at least about 7% (or from about 7% to about 24%, or from about 14% to about 24%, or from about 14% to about 16%) fat,
    • (d) at least one of the following:
      • (i) at least about 250 IU/kg (or from about 250 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1000 IU/kg) vitamin E,
      • (xxiv) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 100 ppm to about 500 ppm, or from about 100 ppm to about 301 ppm) vitamin C,
      • (xxv) at least about 600 ppm (or from about 600 ppm to about 2400 ppm, or from about 1260 ppm to about 2400 ppm, or from about 1260 ppm to about 1575 ppm) taurine, and
      • (xxvi) at least about 50 ppm (or from about 50 ppm to about 200 ppm, or from about 100 to about 160, or from about 100 to about 155) lipoic acid, and
      • (xxvii) at least about 50 ppm (or from about 50 ppm to about 500 ppm, or from about 200 ppm to about 500 ppm, or from about 200 ppm to about 350 ppm) carnitine,
    • (e) at least about 1000 ppm (or from about 1000 ppm to about 3200 ppm, or from about 2000 ppm to about 3200 ppm, or from about 2000 ppm to about 2500 ppm) choline,
    • (f) at least about 50 ppm (or from about 50 ppm to about 150 ppm, or from about 100 ppm to about 150 ppm, or from about 100 ppm to about 110 ppm) manganese, and
    • (g) at least about 0.4% (or from about 0.4% to about 2%, or from about 0.9% to about 2%, or from about 0.9% to about 1.2%) lysine, and
    • (h) at least about 0.4% to about 1.5% methionine.


In another embodiment, the methods of this invention comprise feeding a super senior feline a composition in an amount effective to enhance the feline's alertness and vitality. The composition generally comprises:

    • (a) at least one of the following:
      • (i) at least about 0.05% (or from about 0.05% to about 0.30%, or from about 0.1% to about 0.30%, or from about 0.1% to about 0.2%) DHA, and
      • (ii) at least about 0.1% (or from about 0.1% to about 0.5%, or from about 0.2% to about 0.5%, or from about 0.2% to about 0.3%) EPA,
    • (b) at least about 15% (or from about 15% to about 55%, or from about 30% to about 55%, or from about 33% to about 36%) protein,
    • (c) at least about 9% (or from about 9% to about 35%, or from about 18% to about 35%, or from about 18% to about 24%) fat,
    • (d) at least one of the following:
      • (i) at least about 250 IU/kg (or from about 250 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1500 IU/kg, or from about 500 IU/kg to about 1100 IU/kg) vitamin E,
      • (xxviii) at least about 50 ppm (or from about 50 ppm to about 300 ppm, or from about 100 ppm to about 300 ppm, or from about 100 ppm to about 200 ppm) vitamin C,
      • (xxix) at least about 1100 ppm (or from about 1100 ppm to about 3500 ppm, or from about 2300 ppm to about 3500 ppm, or from about 2300 ppm to about 2350 ppm) taurine, and
      • (xxx) at least about 200 ppm (or from about 200 to about 750 ppm, or from about 400 ppm to about 750 ppm, or from about 400 to about 525 ppm) carnitine, and
      • (xxxi) at least about 0.05% (or from about 0.05% to about 0.6%, or from about 0.1% to about 0.6%, or from about 0.1% to about 0.4%) cystine.
    • (e) at least about 1600 ppm (or from about 1600 ppm to about 5000 ppm, or from about 3300 ppm to about 5000 ppm, or from about 3300 ppm to about 3400 ppm) choline,
    • (f) at least about 50 ppm (or from about 50 ppm to about 150 ppm, or from about 100 ppm to about 150 ppm, or from about 100 ppm to about 110 ppm) manganese, and
    • (g) at least about 0.7% (or from about 0.7% to about 3%, or from about 1.4% to about 3%, or from about 1.4% to about 1.7%) lysine, and
    • (h) at least about 0.4% to about 1.5% methionine.


In another embodiment, this invention provides a method for improving the quality of life of a senior or super senior small or regular breed canine The method comprises feeding the canine a composition comprising:

    • from about 60% to about 70% by weight carbohydrate;
    • from about 15% to about 25% by weight protein selected from the group consisting of animal protein and vegetable protein;
    • from about 5% to about 7% by weight fat selected from the group consisting of animal fat and vegetable fat;
    • from about 2.5% to about 4% by weight of at least one omega-3 polyunsaturated fatty acids;
    • from about 1% to about 4% by weight fiber;
    • from about 1% to about 2% by weight minerals; and
    • from about 0.5 to about 1.5% by weight vitamins.


In another embodiment, this invention provides a method for improving the quality of life of a senior or super senior large breed canine. The method comprises feeding the canine a composition comprising:

    • from about 60% to about 70% by weight carbohydrate;
    • from about 15% to about 25% by weight protein selected from the group consisting of animal protein and vegetable protein;
    • from about 5% to 10% by weight fat selected from the group consisting of animal fat and vegetable fat;
    • from about 3% to about 5% by weight of at least one omega-3 polyunsaturated fatty acids;
    • from about 1% to about 4% by weight fiber;
    • from about 0.5% to about 1% by weight minerals; and
    • from about 0.75 to about 1.25% by weight vitamins.


In another embodiment, this invention provides a method for improving the quality of life of a senior or super senior feline. The method comprises feeding the feline a composition comprising:

    • from about 30% to about 35% by weight carbohydrate;
    • from about 35% to about 50% by weight protein selected from the group consisting of animal protein and vegetable protein;
    • from about 12% to about 15% by weight fat selected from the group consisting of animal fat and vegetable fat;
    • from about 1% to about 2% by weight of at least one omega-3 polyunsaturated fatty acids;
    • from about 1% to about 5% by weight fiber;
    • from about 1% to about 2% by weight minerals; and
    • from about 1% to about 2% by weight vitamins.


In a further embodiment, this invention provides a method for improving the quality of life of a senior or super senior animal comprising feeding the animal (e.g., small, regular or large breed canine or feline, as the case may be) a composition comprising the components as indicated in Table 1A below:









TABLE 1A







Chemical composition of Super Senior Foods











Small/Regular
Large



Nutrient Component
Breed Canine
Breed Canine
Feline













Crude Protein, %
20.1
19.34
35.73


Fat, %
16.45
16.92
22.47


Calcium, %
0.71
0.73
0.94


Phosphorus, %
0.61
0.68
0.77


EPA, %
0.32
0.32
0.23


DHA, %
0.22
0.22
0.32


Linoleic Acid, %
3.96
4.04
5.05


Total N-3 fatty acids, %
1.3
2.24
1.14


Total N-6 fatty acids, %
3.96
3.99
5.09


Taurine, ppm
1400
15.25
2100


Carnitine, ppm
314
337
367


Methioinine, %
1
1.19
1.32


Cystine, %
0.25
0.24
0.47


Manganese, ppm
87
100
104


Vitamin E, IU/kg
1492
1525
1292


Vitamin C, ppm
127
261
141


Lipoic Acid, ppm*
101
135





*Lipoic acid based on formulated, not analyzed values.






The compositions for use in the methods of this invention further comprise at least one nutrient selected from the group consisting of manganese, methionine, cysteine, mixtures of methionine and cysteine, L-carnitine, lysine, and arginine. Specific preferred amounts for each component in a composition will depend on a variety of factors including, for example, the species of animal consuming the composition; the particular components included in the composition; the age, weight, general health, sex, and diet of the animal; the animal's consumption rate, and the like. Thus, the component amounts may vary widely, and may even deviate from the proportions given herein.


The omega-3 fatty acids may be obtained from a variety of sources. One convenient source is fish oils from, for example, menhaden, mackerel, herring, anchovy, and salmon. DHA and EPA are typical fatty acids present in such fish oils, and, together often make up a significant portion of the oil, such as from about 25% to about 38% of the oil.


When the composition is an animal food, vitamins and minerals preferably are included in amounts required to avoid deficiency and maintain health. These amounts are readily available in the art. The National Research Council (NRC), for example, provides recommended amounts of such ingredients for farm animals. See, e.g., Nutrient Requirements of Swine (10th Rev. Ed., Nat'l Academy Press, Washington D.C., 197298), Nutrient Requirements of Poultry (9th Rev. Ed., Nat'l Academy Press, Washington D.C., 1994), Nutrient Requirements of Horses (Fifth Rev. Ed., Nat'l Academy Press, Washington D.C., 1989), Nutrient Requirements of Dogs and Cats (Nat'l Academy Press, Washington D.C., 2006). The American Feed Control Officials (AAFCO), for example, provides recommended amounts of such ingredients for dogs and cats. See American Feed Control Officials, Inc., Official publication, pp. 126-140 (2003). Examples of vitamins useful as food additives include vitamin A, B1, B2, B6, B12, C, D, E, K, H (biotin), K, folic acid, inositol, niacin, and pantothenic acid. Examples of minerals and trace elements useful as food additives include calcium, phosphorus, sodium, potassium, magnesium, copper, zinc, chloride, and iron salts.


The methods of the present invention include compositions that may further contain other additives known in the art. Preferably, such additives are present in amounts that do not impair the purpose and effect provided by the invention. Examples of additives include, for example, substances with a stabilizing effect, processing aids, substances that enhance palatability, coloring substances, and substances that provide nutritional benefits.


Stabilizing substances include, for example, substances that tend to increase the shelf life of the composition. Potentially suitable examples of such substances include, for example, preservatives, antioxidants, synergists and sequestrants, packaging gases, stabilizers, emulsifiers, thickeners, gelling agents, and humectants. Examples of emulsifiers and/or thickening agents include, for example, gelatin, cellulose ethers, starch, starch esters, starch ethers, and modified starches.


Additives for coloring, palatability (“pal enhancers”), and nutritional purposes include, for example, colorants (e.g., iron oxide, such as the red, yellow, or brown forms); sodium chloride, potassium citrate, potassium chloride, and other edible salts; vitamins; minerals; and flavoring. Such additives are known in the art. See, e.g., U.S. Pat. No. 3,202,514. See also, U.S. Pat. No. 4,997,671. Flavorants include, for example, dairy product flavorants (e.g., milk or cheese), meat flavorants (e.g., bacon, liver, beef, poultry, or fish), oleoresin, pinacol, and the various flavorants identified in the trade by a FEMA (Flavor Extract Manufacturers Association) number. Flavorants help provide additional palatability, and are known in the art. See, e.g., U.S. Pat. No. 4,997,672. See also, U.S. Pat. No. 5,004,624. See also, U.S. Pat. No. 5,114,704. See also, U.S. Pat. No. 5,532,010. See also, U.S. Pat. No. 6,379,727. The concentration of such additives in the composition typically may be up to about 5% by weight. In some embodiments, the concentration of such additives (particularly where such additives are primarily nutritional balancing agents, such as vitamins and minerals) is from about 0% to about 2.0% by weight. In some embodiments, the concentration of such additives (again, particularly where such additives are primarily nutritional balancing agents) is from about 0% to about 1.0% by weight.


Supplements include, for example, a feed used with another feed to improve the nutritive balance or performance of the total. Supplements include compositions that are fed undiluted as a supplement to other feeds, offered free choice with other parts of an animal's ration that are separately available, or diluted and mixed with an animal's regular feed to produce a complete feed. The AAFCO, for example, provides a discussion relating to supplements in the American Feed Control Officials, Inc. Official Publication, p. 220 (2003). Supplements may be in various forms including, for example, powders, liquids, syrups, pills, encapsulated compositions, and the like.


Treats include, for example, compositions that are given to an animal to entice the animal to eat during a non-meal time. Treats for canines include, for example, dog bones. Treats may be nutritional, wherein the composition comprises one or more nutrients, and may, for example, have a composition as described above for food. Non-nutritional treats encompass any other treats that are non-toxic.


Toys include, for example, chewable toys. Toys for dogs include, for example, artificial bones. There is a wide range of suitable toys currently marketed. See, e.g., U.S. Pat. No. 5,339,771 (and references disclosed in U.S. Pat. No. 5,339,771). See also, e.g., U.S. Pat. No. 5,419,283 (and references disclosed in U.S. Pat. No. 5,419,283). The invention provides both partially consumable toys (e.g., toys comprising plastic components) and fully consumable toys (e.g., rawhides and various artificial bones). It should be further recognized that this invention provides toys for both human and non-human use, particularly for companion, farm, and zoo animal use, and particularly for dog, cat, or bird use.


A “food” is a nutritionally complete diet for the intended recipient animal (e.g., domestic cat or domestic dog). A “nutritionally complete diet” is a diet that includes sufficient nutrients for maintenance of normal health of a healthy animal on the diet. The methods of this invention utilize compositions that are not intended to be restricted by any specific listing of proteinaceous or fat ingredients or product form. The compositions can be prepared in, for example, a dry, canned, wet, or intermediate moisture form using conventional pet food processes. In some embodiments, the moisture content is from about 10% to about 90% of the total weight of the composition. In other embodiments, the moisture content is from about 65% to about 75% of the total weight of the composition.


In preparing a composition for use with the methods of the present invention, any ingredient (e.g., fish oil) generally may, for example, be incorporated into the composition during the processing of the formulation, such as during and/or after mixing of other components of the composition. Distribution of these components into the composition can be accomplished by conventional means. In one embodiment, ground animal and poultry proteinaceous tissues are mixed with the other ingredients, including fish oils, cereal grains, other nutritionally balancing ingredients, special-purpose additives (e.g., vitamin and mineral mixtures, inorganic salts, cellulose and beet pulp, bulking agents, and the like); and water that is sufficient for processing is also added. These ingredients preferably are mixed in a vessel suitable for heating while blending the components. Heating of the mixture may be effected using any suitable manner, such as, for example, by direct steam injection or by using a vessel fitted with a heat exchanger. Following the addition of the last ingredient, the mixture is heated to a temperature range of from about 50° F. (10° C.) to about 212° F. (100° C.). In some embodiments, the mixture is heated to a temperature range of from about 70° F. (21° C.) to about 140° F. (60° C.). Temperatures outside these ranges are generally acceptable, but may be commercially impractical without use of other processing aids. When heated to the appropriate temperature, the material will typically be in the form of a thick liquid. The thick liquid is filled into cans. A lid is applied, and the container is hermetically sealed. The sealed can is then placed into conventional equipment designed to sterilize the contents. This is usually accomplished by heating to temperatures of greater than about 230° F. (110° C.) for an appropriate time, which is dependent on, for example, the temperature used and the composition.


Methods of the present invention include utilizing compositions that can be prepared in a dry form using conventional processes. In one embodiment, dry ingredients, including, for example, animal protein sources, plant protein sources, grains, etc., are ground and mixed together. Moist or liquid ingredients, including fats, oils, animal protein sources, water, etc., are then added to and mixed with the dry mix. The mixture is then processed into kibbles or similar dry pieces. Kibble is often formed using an extrusion process in which the mixture of dry and wet ingredients is subjected to mechanical work at a high pressure and temperature, and forced through small openings and cut off into kibble by a rotating knife. The wet kibble is then dried and optionally coated with one or more topical coatings which may include, for example, flavors, fats, oils, powders, and the like. Kibble also can be made from the dough using a baking process, rather than extrusion, wherein the dough is placed into a mold before dry-heat processing.


The compositions are also designed to be easier to chew. Canine and feline foods are typically formulated based on life stage (age), size, body composition, and breed. In the methods of this invention, some embodiments of the compositions address specific nutritional differences between super senior regular or small breed dogs, large breed dogs, and cats.


All percentages expressed herein are on a weight by dry matter basis unless specifically stated otherwise.


As noted previously, this invention is directed, in part, to a method for enhancing the quality of life of an animal. The method comprises feeding a senior or super senior animal a composition in an amount effective to enhance alertness, improve vitality, protect cartilage, maintain muscle mass, enhance digestibility, and improve skin and pelage quality. Additionally, we now report herein our surprising discovery that the enhanced quality of life of an animal achieved by administration of the compositions of the present invention is reflected at the genomic level. While it may be that a change in expression of any one gene disclosed in the tables presented below may result in beneficial or deleterious biological effects, the data presented herein indicate that, overall, the observed expression profiles are consistent with the beneficial biological effects seen in vivo after administration of the diets disclosed herein. Specifically, gene chip data indicate that the expression of genes that encode proteins associated with or related to several biological pathways such as blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport are, for the most part, beneficially altered through administration to the animal of compositions described herein. Thus, the invention also relates to methods of measuring or characterizing the enhancement in the quality of life of an animal, particularly a senior or super senior animal, fed a composition described herein by quantitating the gene expression levels of one or more genes selected from a group consisting of those disclosed in Tables 5-14 in said animal and comparing said levels in the animal to levels in the animal prior to administration of the feed composition. Quantitation of gene expression may be carried out in numerous ways familiar to one of skill in the art and include such techniques as RT PCR as well as gene chip assays and Northern blotting. Thus, it is contemplated herein that the expression levels detected may be used, for example, in methods to measure enhancement in the quality of life of an animal as disclosed herein.


In another aspect, the present invention relates to kits which comprise:


(a) a polynucleotide of a gene disclosed herein or a fragment thereof;


(b) a nucleotide sequence complementary to that of (a);


(c) a polypeptide encoded by a gene disclosed herein, or a fragment thereof; or


(d) an antibody to a polypeptide encoded by a gene disclosed herein, or a fragment thereof.


It will be appreciated that in any such kit, (a), (b), (c) or (d) may comprise a substantial component. The manufacture of kits as described herein and components thereof (e.g., antibody production) may be achieved according to conventional methods.


It is contemplated herein that modulating the expression levels of the genes disclosed herein may have therapeutic value with regard to the treatment of diseases or disorders associated with the various biological pathways. Such determination may be made on a gene by gene basis without undue experimentation, for example, by assessing expression levels in tissues as well as in blood samples, or by assaying expression levels in vitro in cells or cell lines relevant to particular disease states and suitable for such experimentation. In vivo models of disease might also be utilized in such experimentation. The nature of these and other suitable additional assays would be familiar to one of skill in the art. Thus, based on the genomic data disclosed herein, the invention also relates to methods to enhance the quality of life of an animal by modulating the expression level of one or more genes listed on Tables 5-14 (i.e. up or down regulation as indicated therein) in an animal in order to mimic the pattern of expression seen in vivo after administration of the pet food compositions of the present invention.


Modulation of gene expression levels may be achieved through the use of known modulators of gene expression suitable for administration in vivo, including, but not limited to, ribozymes, antisense oligonucleotides, triple helix DNA, RNA aptamers and/or double stranded RNA directed to an appropriate nucleotide sequence of a gene of interest. These inhibitory molecules may be created using conventional techniques by one of skill in the art without undue burden or experimentation. For example, modification (e.g. inhibition) of gene expression may be obtained by designing antisense molecules, DNA or RNA, to the control regions of the genes discussed herein, i.e. to promoters, enhancers, and introns. For example, oligonucleotides derived from the transcription initiation site, e.g., between positions −10 and +10 from the start site may be used. Notwithstanding, all regions of the gene may be used to design an antisense molecule in order to create those which gives strongest hybridization to the mRNA and such suitable antisense oligonucleotides may be produced and identified by standard assay procedures familiar to one of skill in the art.


Similarly, inhibition of gene expression may be achieved using “triple helix” base-pairing methodology. Triple helix pairing is useful because it causes inhibition of the ability of the double helix to open sufficiently for the binding of polymerases, transcription factors, or regulatory molecules. Recent therapeutic advances using triplex DNA have been described in the literature (Gee, J. E. et al. (1994) In: Huber, B. E. and B. I. Carr, Molecular and Immunologic Approaches, Futura Publishing Co., Mt. Kisco, N.Y.). These molecules may also be designed to block translation of mRNA by preventing the transcript from binding to ribosomes.


Ribozymes, enzymatic RNA molecules, may also be used to modulate gene expression by catalyzing the specific cleavage of RNA. The mechanism of ribozyme action involves sequence-specific hybridization of the ribozyme molecule to complementary target RNA, followed by endonucleolytic cleavage. Examples which may be used include engineered “hammerhead” or “hairpin” motif ribozyme molecules that can be designed to specifically and efficiently catalyze endonucleolytic cleavage of gene sequences.


Specific ribozyme cleavage sites within any potential RNA target are initially identified by scanning the target molecule for ribozyme cleavage sites which include the following sequences: GUA, GUU and GUC. Once identified, short RNA sequences of between 15 and 20 ribonucleotides corresponding to the region of the target gene containing the cleavage site may be evaluated for secondary structural features which may render the oligonucleotide inoperable. The suitability of candidate targets may also be evaluated by testing accessibility to hybridization with complementary oligonucleotides using ribonuclease protection assays.


Ribozyme methods include exposing a cell to ribozymes or inducing expression in a cell of such small RNA ribozyme molecules (Grassi and Marini, 1996, Annals of Medicine 28: 499-510; Gibson, 1996, Cancer and Metastasis Reviews 15: 287-299). Intracellular expression of hammerhead and hairpin ribozymes targeted to mRNA corresponding to at least one of the genes discussed herein can be utilized to inhibit protein encoded by the gene.


Ribozymes can either be delivered directly to cells, in the form of RNA oligonucleotides incorporating ribozyme sequences, or introduced into the cell as an expression vector encoding the desired ribozymal RNA. Ribozymes can be routinely expressed in vivo in sufficient number to be catalytically effective in cleaving mRNA, and thereby modifying mRNA abundance in a cell (Cotten et al., 1989 EMBO J. 8:3861-3866). In particular, a ribozyme coding DNA sequence, designed according to conventional, well known rules and synthesized, for example, by standard phosphoramidite chemistry, can be ligated into a restriction enzyme site in the anticodon stem and loop of a gene encoding a tRNA, which can then be transformed into and expressed in a cell of interest by methods routine in the art. Preferably, an inducible promoter (e.g., a glucocorticoid or a tetracycline response element) is also introduced into this construct so that ribozyme expression can be selectively controlled. For saturating use, a highly and constituently active promoter can be used. tDNA genes (i.e., genes encoding tRNAs) are useful in this application because of their small size, high rate of transcription, and ubiquitous expression in different kinds of tissues. Therefore, ribozymes can be routinely designed to cleave virtually any mRNA sequence, and a cell can be routinely transformed with DNA coding for such ribozyme sequences such that a controllable and catalytically effective amount of the ribozyme is expressed. Accordingly the abundance of virtually any RNA species in a cell can be modified or perturbed.


Ribozyme sequences can be modified in essentially the same manner as described for antisense nucleotides, e.g., the ribozyme sequence can comprise a modified base moiety.


RNA aptamers can also be introduced into or expressed in a cell to modify RNA abundance or activity. RNA aptamers are specific RNA ligands for proteins, such as for Tat and Rev RNA (Good et al., 1997, Gene Therapy 4: 45-54) that can specifically inhibit their translation.


Gene specific inhibition of gene expression may also be achieved using conventional RNAi technologies. Numerous references describing such technologies exist and include, for example, WO 99/32619; Miller et al. Cell Mol Neurobiol 25:1195-207 (2005); Lu et al. Adv Genet 54:117-42 (2005).


Antisense molecules, triple helix DNA, RNA aptamers and ribozymes of the present invention may be prepared by any method known in the art for the synthesis of nucleic acid molecules. These include techniques for chemically synthesizing oligonucleotides such as solid phase phosphoramidite chemical synthesis. Alternatively, RNA molecules may be generated by in vitro and in vivo transcription of DNA sequences encoding the genes discussed herein. Such DNA sequences may be incorporated into a wide variety of vectors with suitable RNA polymerase promoters such as T7 or SP6 according to conventional methods. Alternatively, cDNA constructs that synthesize antisense RNA constitutively or inducibly can be introduced into cell lines, cells, or tissues using methods familiar to one of skill in the art. Vectors may be introduced into cells or tissues by many available means, and may be used in vivo, in vitro or ex vivo. For ex vivo therapy, vectors may be introduced into stem cells taken from an animal and clonally propagated for autologous transplant back into that same animal. Delivery by transfection and by liposome injections may be achieved using methods that are well known in the art.


The instant invention also includes a method to identify an animal that might benefit from feeding a composition as disclosed herein comprising measuring the gene expression levels of any one or more genes listed in Tables 5-14 in said animal and comparing said levels to the gene expression levels seen in Tables 5-14 wherein an animal with levels different than those seen in Tables 5-14 (e.g., up regulated versus down regulated) would be identified as potentially benefiting from feeding a composition of the present invention.


It is also contemplated herein that the invention relates to methods for treating an animal suffering from disorders or disease associated with or relating to any one of more of the following biological pathways: blood clotting and platelet activation and aggregation, bone and muscle integrity, inflammatory responses, cartilage degradation and pain response, DNA damage and repair pathways, neural function, glycogen synthesis and degradation, glycolysis, gluconeogenesis, the pentose phosphate pathway and electron transport comprising administering to the animal a composition of the present invention.


This invention is not limited to the particular methodology, protocols, and reagents described herein because they may vary. Further, the terminology used herein is for the purpose of describing particular embodiments only and is not intended to limit the scope of the present invention. The terms “comprise”, “comprises”, and “comprising” are to be interpreted inclusively rather than exclusively.


Unless defined otherwise, all technical and scientific terms and any acronyms used herein have the same meanings as commonly understood by one of ordinary skill in the art in the field of the invention. Although any methods and materials similar or equivalent to those described herein can be used in the practice of the present invention, the preferred methods, devices, and materials are described herein.


All patents, patent applications, and publications mentioned herein are incorporated herein by reference to the extent allowed by law for the purpose of describing and disclosing the compositions, compounds, methods, and similar information reported therein that might be used with the present invention. However, nothing herein is to be construed as an admission that the invention is not entitled to antedate such disclosure by virtue of prior invention.


In the specification there have been disclosed typical preferred embodiments of the invention and, although specific terms are employed, they are used in a generic and descriptive sense only and not for purposes of limitation, the scope of the invention being set forth in the following claims. Many modifications and variations of the present invention are possible in light of the above teachings. It is therefore to be understood that within the scope of the appended claims the invention may be practiced otherwise than as specifically described.


EXAMPLES

This invention can be further illustrated by the following examples of preferred embodiments thereof, although it will be understood that these examples are included merely for purposes of illustration and are not intended to limit the scope of the invention unless otherwise specifically indicated.


Example 1

A composition formulated for senior or super senior regular or small breed canines is described in Table 2.









TABLE 2







Ingredient Composition for Canine


Regular or Small Breed Super Senior










Ingredient
% of composition














Carbohydrate
65.83



Animal Protein
14.31



Vegetable Protein
6.05



Animal/Vegetable Fat
6.60



Omega Fat
3.38



Fiber
1.42



Minerals
1.63



Vitamins
0.78










Example 2

A composition formulated for senior or super senior large breed canines is described in Table 3.









TABLE 3







Ingredient Composition for Canine Large Breed Super Senior










Ingredient
% of composition














Carbohydrate
65.15



Animal Protein
14.79



Vegetable Protein
6.45



Animal/Vegetable Fat
6.23



Omega Fat
4.12



Fiber
1.30



Minerals
0.91



Vitamins
1.05










Example 3

A composition formulated for senior or super senior felines is described in Table 4.









TABLE 4







Ingredient Composition for Feline Super Senior










Ingredient
% of composition














Carbohydrate
31.47



Animal Protein
25.57



Vegetable Protein
20.14



Animal/Vegetable Fat
13.31



Omega Fat
1.61



Fiber
4.80



Minerals
1.77



Vitamins
1.34










Example 4
Genomic Analysis of Control Vs. Super Senior Pet Food

To further characterize the nutritional benefits of the super senior pet food compositions of the present invention, gene expression profiles from animals fed the compositions compared to control animals are assayed and the results are described in detail below.


Materials and Methods:


Study Design:


Blood samples are drawn from 9 Beagles according to conventional methods before and after feeding for 14 days on Super Senior K9 diet (a total of 18 samples). Each sample taken after the 14 day trial is compared to its own control.


Isolation of Lymphocytes from Canine Blood


Reagents:


4 ml canine blood, heparin or EDTA tubes, Hank's Balanced Salt Solution (Gibco 14175-095), HEPES buffer (Gibco 15630-080), Accu-Paque (Accurate Chemical & Scientific Corp AN3100).


Materials/Equipment:


Transfer pipettes (VWR 14670-147), 14 ml centrifuge tubes w/ caps, 9″ Pasteur pipettes, 1.5 ml microcentrifuge tubes (VWR 20170-038), centrifuge tube racks, microcentrifuge tube rack, waste container, Beckman Coulter Allegra 25R Centrifuge, SN AJC01J015Eppendorf Centrifuge, 5417C.


Solutions:


Hank's Balanced Salt Solution (HBSS) w/25 mM HEPES buffer solution is made by adding 12.8 ml of HEPES buffer solution to a 500 ml bottle of HBSS. Hank's Balanced Salt Solution and Accu-Paque need to be removed from the refrigerator and placed at room temperature at least 30 minutes before beginning the lymphocyte isolation. Both solutions should be place back in the refrigerator (4° C.) immediately following their use.


Procedure:






    • 1. Measure 4 ml of HBSS w/ HEPES into the correct number of 14 ml centrifuge tubes (one tube for each 4 ml draw of blood)

    • 2. Using a transfer pipette, transfer 4 ml blood from the Vacutainer® tubes to the 14 ml centrifuge tube containing the HBSS w/ HEPES.

    • 3. Mix the sample well using the transfer pipette to pipette up and down for 30 seconds.

    • 4. Insert a 9″ Pasteur pipette into each of the 14 ml centrifuge tubes. Make sure the bottom tip of the Pasteur pipette touches the bottom of the tube.

    • 5. Using a transfer pipette, slowly add 4 ml of Accu-Paque by running the liquid down the inside of the Pasteur pipette allowing gravity to layer the Accu-Paque under the diluted blood sample.

    • 6. Plug the top of the Pasteur pipette using your finger and gently remove the pipette.

    • 7. Centrifuge the tubes at 800×g for 20 minutes at room temperature. For puppy blood a longer centrifugation of 45 minutes is necessary to allow for a good separation of RBC's from WBC's.

    • 8. Using a transfer pipette, carefully remove the top layer to within 0.5 cm of the middle opaque layer and discard.

    • 9. Using a new transfer pipette, carefully remove the middle opaque layer and transfer to a 1.5 ml microcentrifuge tube. Be careful not to transfer any of the bottom layers.

    • 10. Centrifuge the microcentrifuge tubes at 13,200 rpm for 3.5 minutes at room temperature.

    • 11. Carefully remove the supernatant and flash freeze the remaining pellet (lymphocytes) in liquid nitrogen. Store the final samples at −80° C.


      RNA Isolation:


      Reagents:





Deionized H2O, Absolute ethanol (Sigma E7023), RNA Storage Solution (Ambion 7000), RNase Zap® (Ambion 9780), Buffer RLT, Buffer RW1 and Buffer RPE (provided in the RNeasy Mini Kit).


Equipment/Materials:


RNeasy Mini Kit (Qiagen 74104), QIAshredder spin columns (Qiagen 79656), P1000 Pipetman pipette (Rainin), P200 Pipetman pipette (Rainin), 100-100 μl filtered pipette tips (USA Scientific 1126-7810), 1-200 μl filtered pipette tips (USA Scientific 1120-8810), sterile transfer pipettes (VWR 14670-147), 55 ml sterile solution basin (VWR 21007-974), 2 waste containers (one for liquid, one for tips/pipettes), 1.5 ml sterile microcentrifuge tubes (VWR 20170-038), Microcentrifuge tube rack, permanent marker, Eppendorf Microcentrifuge, model #5417C.


Procedure:






    • 1. Loosen the pellet in the microcentrifuge tubes by thawing slightly and then flick the tube to dislodge the pellet.

    • 2. Add the appropriate volume of Buffer RLT (in this case use 600 μl). Vortex or pipette to mix.

    • 3. Transfer sample to a QIAshredder tube to homogenize the sample. Centrifuge for 2 minutes at 14,000 rpm. Discard spin column but keep the collection tube and its contents.

    • 4. Add one volume (600 μl) of 70% ethanol to the homogenized lysate and mix by pipetting.

    • 5. Apply a 600 μl aliquot of the sample to an RNeasy mini column placed in a 2 ml collection tube. Close tube gently and centrifuge for 15 sec at 14,000 rpm. Discard the flow-through. Add the second 600 μl aliquot of the cell lysate to the same spin column and repeat. Discard flow-through.

    • 6. Reuse the collection tube from step 5. Add 700 μl Buffer RW1 to the column. Centrifuge for 15 sec at 14,000 rpm. Discard the flow-through and collection tube.

    • 7. Transfer the column to a new 2 ml collection tube and pipette 500 μl Buffer RPE onto the column. Centrifuge for 15 sec at 14,000 rpm to wash the column. Discard the flow-through but save the collection tube for step 8.

    • 8. Add another 500 ml Buffer RPE to the column. Centrifuge for 2 min at 14,000 rpm to dry the membrane.

    • 9. Transfer the column to a new 1.5 ml collection tube. Pipette 10 μl of RNA Storage Solution directly onto the membrane. Centrifuge for 1 min at 14,000 rpm to elute the RNA. Add a second volume of 5 μl of RNA Storage Solution directly to the membrane and spin for an additional minute. Store the final elution of RNA at −80° C.


      RNA Probe Preparation and Hybridization.


      Reagent:





Ovation™ Biotin System v1.0 for probe preps.


Protocol:


User Guide (Cat#D01002, version Oct. 27, 2004, NuGEN Technologies, Inc). The experimental procedure is followed as described in the user guide. All probe preparation starts with 50 ng of total RNA.


Genechip Procedures:


The Genechips used for the test is the Canine Genome 2.0 Array (Affymetrix). This Genechip contains 44,000 probe sets. Detailed sequence information for each unique probe identification number is available from the manufacturer.


Gene Expression Analysis:


Normalization is performed using MAS 5 provided in GCOS Affymetrix software (version 1.2). Expression levels for the genes analyzed are indicated on the tables included in the examples below, where an upward facing arrow refers to “up regulation” or increase and a downward facing arrow indicates “down regulation” in gene expression. Similarly, in some tables, upward or downward facing arrows also indicate increases or decreases in activity of certain proteins involved in a particular pathway, and are otherwise self explanatory.


Gene List Selection:


15,411 genes are selected for further analysis based on their “present” calls in at least 9 out of 18 samples.


Results of the gene chip analysis indicate that 1088 genes are differentially expressed between the control and Super Senior diet treated groups. The expression levels of these 1088 genes are statistically significant when grouped by ‘diet’; using a parametric test where the variances is not assumed to be equal (Welch t-test). The p-value cutoff is 0.01 with no multiple testing correction. Under those selection criteria only about 154 genes would be expected to pass the restriction by chance. The genomic data is discussed in detail below.


Results:


Effect of Nutrition on Genes Associated with Pain and Inflammation


Based on an analysis of the gene chip data, at the P<0.01 level, 1,088 genes changed compared to control expression levels (10 were up regulated and the rest down regulated). At the P<0.001 level, data indicate that 35 genes are down regulated in beagles fed the super senior food. Nine of these down regulated genes are identified as related to the inflammatory and pain response. Down regulation of these genes may be predicted to result in pain relief, cartilage protection (less damage) and reduction in inflammatory responses. The compositions disclosed herein may be part of a therapeutic regimen to treat animals suffering from pain and/or inflammatory diseases. These genes and their putative role in inflammation and pain response are provided below in Tables 5-6.









TABLE 5





Genes involved in inflammation and pain response (P < 0.001)



















Sequence






ID



Best Current BLAST


No.
Genes
Also Known As
Probe
Annotation





1
Phospholipase A2
IPLA2GAMMA,
CfaAffx.6431.1.S1_s_at
PREDICTED: Canis




IPLA2-2


familiaris similar to







intracellular membrane-






associated calcium-






independent






phospholipase A2 gamma;






transcript variant 3






(LOC475880); mRNA


2
Dipeptidase 2
Putative
CfaAffx.31124.1.S1_at
PREDICTED: Canis




dipeptidase


familiaris similar to







dipeptidase 2






(LOC611083); mRNA


3
Thromboxane
Thromboxane A
CfaAffx.6939.1.S1_s_at
PREDICTED: Canis



synthase
synthase 1,


familiaris similar to





Thromboxane A

Thromboxane-A synthase




synthase, Platelet,

(TXA synthase) (TXS)




Cytochrome P450,

(LOC482771); mRNA




subfamily V,






CYP5, CYP5A1,






Thromboxane






synthatase, TXA






synthase, TXS




4
Ubiquitin
Ubiquitin protein
CfaAffx.275.1.S1_s_at
PREDICTED: Pan



conjugating enzyme
ligase, Ubiquitin


troglodytes LOC461941




E2D 3
carrier protein,

(LOC461941); mRNA




E2(17)KB 3,






Ubiquitin






conjugating enzyme






E2-17 kDa 3, UBC4/5,






UBCH5C




5
NEDD8 ultimate
Neural precursor
Cfa.12556.1.A1_s_at
PREDICTED: Canis



buster-1
cell expressed,


familiaris similar to





developmentally

NEDD8 ultimate buster-1




down regulated 8,

(NY-REN-18 antigen)




Ubiquitin like

(LOC475542); mRNA




protein NEDD8




6
Mitogen-activated
p38, Mitogen
CfaAffx.2947.1.S1_at

Homo sapiens mitogen-




protein kinase
activated protein

activated protein



14 (p38)
kinase 14, Cytokine

kinase 14; transcript




suppressive

variant 2; mRNA (cDNA




antiinflammatory

clone MGC: 34610




drug binding

IMAGE: 5181064);




protein 1, CSBP1,

complete cds




CSAID binding






protein 1, Stress






activated protein






kinase 2A, SAPK2A,






p38 MAP kinase, p38






alpha, RK, MXI2,






Cytokine






suppressive






antiinflammatory






drug binding






protein 2, CSBP2,






CSAID binding






protein 2




7
Matrix
MMP 19
Cfa.4573.1.A1_at

Homo sapiens cDNA




metalloproteinase


FLJ38021 fis; clone



19 (MMP-19)


CTONG2012847


8
Tissue Inhibitor
TIMP-1
Cfa.3680.1.S1_s_at

Canis familiaris TIMP




of


metallopeptidase



metalloproteinases


inhibitor 1 (TIMP1);



(TIMP-1)


mRNA 


9
Fatty acid amide
Oleamide hydrolase
CfaAffx.7308.1.S1_x_at
PREDICTED: Canis



hydrolase (FAAH)
Anandamide


familiaris similar to





amidohydrolase FAAH

Ubiquinol-cytochrome c






reductase complex 11






kDa protein;






mitochondrial precursor






(Mitochondrial hinge






protein) (Cytochrome






C1; nonheme 11 kDa






protein) (Complex III






subunit VIII);






transcript variant 2






(LOC608530); mRNA












Sequence
% match of probe



ID No.
sequence to BLAST hit
Probe Target Sequence





1
100
GGAGCCATGCATTTTATGACAGTCAAACGTGGGAAAATATTCTTAAGGACA




GAATGGGATCCTCGCTAATGATTGAAACAGCAAGAAACCCTTCATGTCCTA




AGGATGGAGGTTTGCTTCTGAATAACCCTTCAGCGCTAGCAATGCACGAGT




GCAAATGTCTTTGGCCTGACGTCCCATTAGAGTGCATTGTGTCCCTGGGCA




CCGGGCGTTATGAGAGTGATGTGAGAAACTCTGTGACATCTACAAGCTTGA




AAACCAAACTGTCTAATGTCATTAACAGTGCTACAGATACAGAAGAAGTCC




ACGTAATGCTTGATGGTCTTTTACCTCCTGACACCTATTTTAGAT





2
82.197
GTGCTGCAATGCAACCTGTTAGCTAACGTGTCCACTGTGGCAGTTCCCACG




CATCCCTGCCCTGGAAGCCCCACAGTGCTGACTCTCCATCCCTCAGATCAC




TTTGACTACATCAGGGCAGTCATTGGATCCAAGTTCATTGGAATTGGTGGA




GATTATGATGGGGCCAGACGTTTCCCTCAGGGGCTGGAGGATGTGTCCACA




TACCCAGTTCTGATAGAGGAGTTGCTGAGGCGTGGCTGGAGTAGGGAAGAG




CTCCAGGGTGTCCTTCGAGGAAACCTACTGCGGGTCTTTGGACAGGTGGAA




CAGGTACGGGAGGCAAGCAAGGGGCAAAGGCCCTTGGAGGATGAGTTCCCG




GATGAGCAGCTGAGCAGCTCTTGCCGCTCCGTTCTCTCACGTCTGCATCAG




ACACAGTACCCTGCTCCATACCAGAAACTAACTGAGATTTCACCTGAGTGG




TCCCCTAAACAGTCATTGTCAAAATCTCTCCCCATCATGGCCCCAGGCCTC




ATAGTTATTGCTGCTTGT





3
100
ATCGCTGGCTATGAGATCATCACCAACACGCTCTCTTTTGCCACCTACCTC




CTGGCCACCAACCCTGACTGCCAAGAGAAGCTTCTGGCAGAGGTGGACAGC




TTTAAGGAGAAATATACGGCCCTTGACTACTGCAGCCTCCAGGAAGGCCTG




CCCTACCTGGACATGGTGATTGCGGAGACCTTGAGGATCTACCCCCCGGCT




TTCAGGTTCACACGGGAGGCGGCGCGGGACTGCGAGGTGCGGGGACAGCGC




ATCCCCGCGGGCGCCGTGGTGGAGGTGGCCGTGGGCGCCCTGCACCGTGAC




CCTGAGTACTGGCCACAACCGGAGACCTTCAACCCCGAGAGGTTCAAGGCC




GAGGCGCAGCGACGACAGCAACCCTTCACCTACCTGCCGTTCGGCGCGGGC




CCCCGGAGCTGCCTCGGGGTGCGGCTGGGGCTGCTGGAGGTCAAGCTGACG




CTGCTGCAGGTCCTGCACCAGTTCCGGTTCGAGGCCTGCCCGGAGACGCAG




GTACCACTGCAGCTAGACTCCAAATCTGCCCTAGGTCCAAAGAATGGCATC




TACATCAAGATTGTCTCCCGCT





4
97.19626
GATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCTGTTTGGGAT




GATATGTTTCATTGGCAAGCCACAATTATAGGACCTAATGACAGCCCATAT




CAAGG





5
99.12473
GGAATGGGCTACTCTACTCATGCAGNCAAGCAGGNCCTGCATCAGGCCAGT




GGGAACCTGGACGAAGCCCTGAAGATTCTTCTCAGCAATCCTCAGATGTGG




TGGTTAAATGATTCAGATCCTGAAACGANCAACCAGCAAGAAAGTCCTTCC




CAGGAAAACATTGACCAACTGGTGTACATGGGCTTCGACGCTGTGGTGGCT




GATGCTGCCTTGAGAGTGTTCAGGGGAAACGTGCAGCTGGCAGCTCAGNCC




CTCGCCCACAACGGAGGAACTCTTCCTCCTGACCTGCAGCTCTTGGTGGAA




GACTCTTCATCAACGCCATCCACGTCCCCTTCCGACTCCGCAGGTACCTCT




AGTGCCTCAACAGATGAAGATATGGAAACCGAAGCTGTCAATGAAATACTG




GAAGATATTCCAGAACATGAAGAAGATTATCTTGACTCAACACTGGAAG





6
97.84946
GAGATGGAGTCCTGAGCACCTGGTTTCTGTTTTGTTGATCCCACTTCACTG




TGAGGGGAAGGCCTTTTCATGGGAACTCTCCAAATATCATTC





7
48.93048
GTAGTTGATTCCTGGTTCGCCTTTCCTCTTGGGTCCCATAGGTTCGAATCC




CCTTCTACCTCAGTCGGGAGTACTGTCCTCCATGGTGCTTCCCTTCCTCTC




CTTAATGTGGGGAAGACCATGGGGCAATGCATGGCGCAGGACCTGCCTCCC




CCAAAAGCAGTCTACTTGCTCCACGGAGAGAGAACTGGGTCCACGTGCCAG




AGTCTTGCCCTTTGGCCCAGAGTAGCCTGGTCTTCATGGCTGTATGGGAGA




CAAGTGCCTTCTCTGCTTCTTGTTGTAGGTGATGCTAATCTCCTTAACCAA




ACCTTTGTCCCAGCCGCTAATCTGTTCTAACTCTCCCTCCTCNTGATTCTC




CTGCTCAAAGTCTGTTC





8
99.4
AGATGTTCAAGGGTTTCAGCGCCTTGGGGAATGCCTCGGACATCCGCTTCG




TCGACACCCCCGCCCTGGAGAGCGTCTGCGGATACTTGCACAGGTCCCAGA




ACCGCAGCGAGGAGTTTCTGGTCGCCGGAAACCTGCGGGACGGACACTTGC




AGATCAACACCTGCAGTTTCGTGGCCCCGTGGAGCAGCCTGAGTACCGCTC




AGCGCCGGGGCTTCACCAAGACCTATGCTGCTGGCTGTGAGGGGTGCACAG




TGTTTACCTGTTCATCCATCCCCTGCAAACTGCAGAGTGACACTCACTGCT




TGTGGACGGACCAGTTCCTCACAGGCTCTGACAAGGGTTTCCAGAGCCGCC




ACCTGGCCTGCCTGCCAAGAGAGCCAGGGATATGCACCTGGCAGTCCCTGC




GGCCCCGGATGGCCTAAATCCTACTCCCCGTGGAAGCCAAAGCCTGCACAG




TGTTCACCCCACTTCCCACTCCTGTCTTTCTTTATCCAAAA





9
63.33333
GAAGTGGAGTAGGTGCCGCTGTTGCTGCTGGTGTTGAATTCAGAACTGTAG




CGGGACATGGGGCTGGAGGACGAGCAAAAGATGCTGACCGGGTCCGGAGAT




CCCAAGGAGGATCCCCTAACAACAGTGAGAGAGCAATGCGAGCAGCTGGAG




AAATGTGTAAAGGCTCGGGAGCGGCTAGAGCTCTGTGACCAGCGTGTATCC




TCCAGGTCACAGACAGAGGAGGATTGCACAGAGGAGCTCTTTGACTTCCTG




CATGCAAGGGACCACTGTGTGGCCCACAAACTCTTTAACAGCTTG
















TABLE 6







Summary of down-regulated enzyme roles involved


in the eicosanoid pathway (inflammatory response)











Gene Expression




Gene
Compared to Control
Results in
Role





Phospholipase A2

↓ in arachidonic
↓ in 2-series inflammatory




release from
response




phospholipids


Thromboxane synthase

↓ Thromboxane A2
↓ platelet aggregation,





vasoconstriction, lymphocyte





proliferation and





bronchoconstriction




↓ Thromboxane B2
↓ vasoconstriction


Dipeptidase 2

↓ Leukotriene E4
↓ component of slow-reactive





substance of anaphylaxis,





microvascular vasoconstrictor and





bronchoconstriction


Ubiquitin conjugating

↓ ubiquination or
↓ MMP Production


enzyme E2D 3

activation of TAK1,


(and NEDD8 ultimate

IRAK and TRAF


buster-1)


Mitogen activated

↓ in c-Jun promotor
↓ MMP Production


protein kinase 14 (p38)


MMP-19

↓ MMP-19
↓ in T-cell derived MMP-19





which has been implicated in





rheumatoid arthritis


TIMP-1

↓ TIMP-1
Deactivates MMP's concentration





is directly related to MMP





concentration


Fatty acid amide

↑ anandmide
↓ pain response


hydrolase










Effect of Nutrition on Genes Involved in Heart Health and Blood Coagulation


At the P<0.001 and P<0.01 level, 12 genes are identified to be related to heart health through regulation of the eicosanoid pathway and blood coagulation pathway. The genes are responsible for blood coagulation through platelet activation and aggregation. The down regulation of these genes through nutrition can prevent inappropriate blood clotting which may result in heart or brain related disorders. The compositions of the present invention may be part of a therapeutic regimen to treat animals suffering from disorders or diseases of the blood, heart or brain. These genes and their putative role in vivo are described in Tables 7 and 8 below.









TABLE 7





Genes involved in heart health and blood coagulation



















Sequence






ID No.
Gene
Probe
P-value
Best current BLAST annotation





10
Glycoprotein
Cfa.3503.1.S1_at
<0.01

Canis familiaris glycoprotein Ib




Ib


mRNA; complete cds


11
Platelet
CfaAffx.4809.1.S1_at
<0.01
PREDICTED: Canis familiaris



glycoprotein


similar to glycoprotein VI



VI


(platelet) (LOC484303); mRNA


12
Platelet
CfaAffx.7430.1.S1_at
<0.01
PREDICTED: Canis familiaris



glycoprotein


similar to Platelet glycoprotein



IX precursor


IX precursor (GPIX) (CD42A)






(LOC609630); mRNA


13
Coagulation
CfaAffx.14964.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



factor XIII A


similar to Coagulation factor



chain


XIII A chain precursor



precursor


(Coagulation factor XIIIa)






(Protein-glutamine gamma-






glutamyltransferase A chain)






(Transglutaminase A chain);






transcript variant 1 (LOC478711);






mRNA


3
Thromboxane
CfaAffx.6939.1.S1_s_at
<0.001
PREDICTED: Canis familiaris



synthase


similar to Thromboxane-A synthase






(TXA synthase) (TXS) (LOC482771);






mRNA


14
Dystrobrevin
CfaAffx.15541.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



binding


similar to dystrobrevin binding



protein 1


protein 1 isoform a (LOC610315);



isoform a


mRNA


15
Integrin beta-
Cfa.11961.1.A1_s_at
<0.01
PREDICTED: Canis familiaris



7 precursor


similar to Integrin beta-7






precursor (LOC477598); mRNA


16
integrin-
Cfa.465.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



linked kinase


similar to integrin linked






kinase; transcript variant 1






(LOC476836); mRNA


17
Thrombospondin
Cfa.21204.1.S1_at
<0.01
PREDICTED: Canis familiaris



1


similar to thrombospondin 1






precursor (LOC487486); mRNA


18
Thrombospondin
CfaAffx.18675.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



repeat


similar to extracellular matrix



containing 1


protein 1 isoform 1 precursor






(LOC608791); mRNA


19
Thrombospondin
CfaAffx.16694.1.S1_at
<0.01
PREDICTED: Canis familiaris



type 1 motif,


similar to lines homolog 1



17


isoform 1 (LOC607902); mRNA


20
Angio-
Cfa.8616.1.A1_s_at
<0.001

Canis familiaris angio-associated




ssociated


migratory cell protein (AAMP)



migratory cell


gene; complete cds



protein (AAMP)












Sequence
% match of probe



ID No.
sequence to BLAST hit
Probe Target Seq.





10
98.57143
TGTGGGTCCGAGCTAACAGCTACGTGGGGCCTCTGATGGCAGGACGGCGGCCCTCT




GCCCTGAGCCTGGGTCGTGGGCAGGACCTGCTAGGTACGGTGGGCGTTAGGTACTC




CAGCCACAGCCTCTGAGGCGACGGTGGGCAGTTTGGGGACCTTGAGAGGCTGTGAT




GGGCCCTCCTATCAGGATCTTGCTGGGGGTGGGTGGGCAGGGAGCACAGGATTGGG




GGGAGGCCTTAAGCACCTTTTCTGGGTCAGAAGCCTCCTCTCCGCATTGCATGTGC




AACCTCAGTGAAGCAGCATGGGCAGGGGAGCCGGACGGGCCACCCAACAGAGCTCC




TTATGCTGCAGGAGGGGTTCACAGACCACTCGGACATCACCATCACCTTGGGGGGG




GTGCTTGAGGGAAAAGCAAATTGAACAGAGCGTGATTCTCACGTGCAGGTACCTAA




GGGAACTGGGGAAGAGATGCACCAAGACGAGAGCCCTCGTCATCCCTGGGGAGCCC




AAGCCTAGGGGTTTTCTTCCTCTTCCCGTTTAGCATTTTCCACCATCGTATGTTAC





11
50
AGTTTTGACCAATTCGCTCTGTACAAGGAGGGGGACACTGAGCCCCACAAGCAATC




TGCAGAACAGTACTGGGCCAATTTCCCCATCACCGCAGTGACTGTTGCCCACAGTG




GGATCTACCGATGCTATAGCTTTTCCAGCAAGTTCCCGTACCTGTGGTCAGCCCCC




AGCGACCCCCTGGAGCTTGTGGTAACAGGTGAGGGAGATGCAGTCCAAGCCTTTCT




TCTTCAGCTCTTGCATACTCTGGTGGAAGTTCCAGGGGAGGGGCCAACAGTGCCTT




CTAGGACTATCACTGTCTCTCCAAAGGGGTCAGACTCTCCAACTGGTCTTGCTCAC




CAGCACTACACCAAGGGCAATCTGGTCCGGATATGCCTTGGAGCTGTGATTCTAAT




ACTCCTGGTGGGAATTCTGGCAGAAGATTGGCACAGCAGAAAGAAACCCCTGTTGC




TCCGGGTCAGAGCTGTCCACAGGCCACTCCCACCCCTCCCACAGACCCAGAAACCA




CACAGTCATCAGGATGGGGGTCGACCAGATGGCCATAACCAT





12
100
TCTGGGCTGCCACGGAGGCCACCAACGACTGCCCCGCAGAGTGCACCTGCCAGACC




CTGGAGACCATGGGGCTGTGGGTGGACTGCAGGGGGCGGGGACTCAAGGCCCTGCC




CGCCCTGCCGGTCCACACCCGCCACCTCCTGCTGGCCAATAACAGCCTCCGCTCCG




TGCCCCCTGGTGCCTTCGACCACCTGCCTGGGCTGCAGATCCTCGACGTGATGCAC




AACCCCTGGCACTGTGACTGCAGCCTCACCTACCTGCGTCTCTGGCTGGAGGACCA




CACGCCCGAGGCCTTGCTGCAGGTCCGCTGTGCCAGCCCCGCGCTGGCCACCACCC




GGCCGCTGGGCTGGCTGACGGGCTACGAGCTGGGCAGCTGCGGCTGGCAGCTACAG




GCACCCTGGACCTA





13
99.6008
ATCTCTCAGGCAACATCGTCTTCTACACCGGGGTCTCCAAGACGGAATTCAAGAAG




GAGACATTTGAAGTGACACTGGAGCCCTTGTCTTTCAAGAGAGAGGAGGTGCTGAT




CAGAGCGGGCGAGTACATGGGCCAGCTGCTAGAGCAAGCATACCTGCACTTCTTTG




TCACAGCGCGTGTCAATGAGTCCAAGGATATTCTGGCCAAGCAGAAGTCCACCGTG




CTGACGATCCCCCAGCTCATCATCAAGGTCCGTGGCGCCAAGATGGTTGGTTCTGA




CATGGTGGTGACAGTTGAGTTCACCAATCCCCTGAAAGAAACTCTGCGGAATGTGT




GGATACACCTGGATGGTCCTGGAGTGATAAAGCCAATGAGGAAGATGTTCCGTGAA




ATCCAGCCCANTGCCACCATACAATGGGAAGAAGTGTGTCGACCCTGGGTGTCTGG




CCCTCGGAAGCTGATAGCCAGCATGACGAGTGACTCCCTGAGACACGTGTATG





3
100
ATCGCTGGCTATGAGATCATCACCAACACGCTCTCTTTTGCCACCTACCTCCTGGC




CACCAACCCTGACTGCCAAGAGAAGCTTCTGGCAGAGGTGGACAGCTTTAAGGAGA




AATATACGGCCCTTGACTACTGCAGCCTCCAGGAAGGCCTGCCCTACCTGGACATG




GTGATTGCGGAGACCTTGAGGATCTACCCCCCGGCTTTCAGGTTCACACGGGAGGC




GGCGCGGGACTGCGAGGTGCGGGGACAGCGCATCCCCGCGGGCGCCGTGGTGGAGG




TGGCCGTGGGCGCCCTGCACCGTGACCCTGAGTACTGGCCACAACCGGAGACCTTC




AACCCCGAGAGGTTCAAGGCCGAGGCGCAGCGACGACAGCAACCCTTCACCTACCT




GCCGTTCGGCGCGGGCCCCCGGAGCTGCCTCGGGGTGCGGCTGGGGCTGCTGGAGG




TCAAGCTGACGCTGCTGCAGGTCCTGCACCAGTTCCGGTTCGAGGCCTGCCCGGAG




ACGCAGGTACCACTGCAGCTAGACTCCAAATCTGCCCTAGGTCCAAAGAATGGCAT




CTACATCAAGATTGTCTCCCGCT





14
99.65986
GGCAACATGTCGTCCATGGAGGTCAACATCGACATGCTGGAGCAGATGGACCTGAT




GGACATCTCTGACCAGGAGGCCCTGGACGTCTTCCTGAACTCCGGCGCTGAAGACA




ACACGGTGCCGTCTCCGGTCTCAGGGCCTGGCTCGGGGGACAGTCGGCAGGAAATC




ACGCTCCGGGTTCCAGATCCCGCCGAATCGCAAGCTGAGCCTCCTCCCTCGCCGTG




TGCCTGTCCTGAGCTGGCCGCCCCGGCCCCCGGCGACGGTGAGGCCCCCGTGGTCC




AGTCTGACGAGGAG





15
99.0909
ATTACAACGTGACTCTGGCTTTGGTCCCTGTCCTGGATGACGGCTGGTGCAAAGAG




AGGACCCTAGACNAACCAGCTGCTGTTCTTCCTGGTGGAGGAGGAANCCGGAGGCA




TGGTTGTGTTGACAGTGAGACCCCAAGAGAGAGGCGCGGATCACACCCAGGCCATC




GTGCTGGGCTGTGTAGGGGGCATCGTGGCAGTGGGGCTGGGGCTGGTCCTGGCTTA




CCGGCTCTCTGTGGAAATCTACGNCCGCCGAGAATTTAGCCGCTTTGAGAAGGAGC




AGAAGCACCTCAACTGGAAGCAGGAAAACAATCCTCTCTACAGAAGCGCC





16
100
TGGGCGCATGTATGCACCTGCCTGGGTGGCCCCTGAAGCTCTGCAGAAGAAGCCTG




AAGATACAAACAGACGCTCAGCAGATATGTGGAGTTTTGCAGTGCTTCTGTGGGAA




CTGGTGACGAGGGAGGTACCCTTTGCTGACCTCTCCAACATGGAGATTGGAATGAA




GGTGGCACTGGAAGGCCTTCGGCCTACTATCCCACCAGGCATTTCCCCCCATGTGT




GTAAGCTCATGAAGATCTGCATGAATGAAGACCCTGCTAAGCGGCCCAAGTTTGAC




ATGATTGTGCCTATCCTGGAGAAGATGCAGGACAAGTAGAGCTGGAAAGCCCTTGC




CTAAACTCCAGAGGTGTCAGGACACGGTTAGGGGAGTGTGTCTCCCCAAAGCAGCA




GGC





17
54.83871
ATACGAATGCAGAGATTCCTAATCAAACTGTTGATCAAAAGACTGATCCTAACCAA




TGCTGGTGTTGCACCTTCTGGAACCACGGGCTTAAGAAAACCCCCAGGATCACTCC




TCCCTGCCTTTTCTCTGCTTGCATATCATTGTGGACACCTAGAATACGGGACTTGC




CTCGAGACCATGCNNNNNTCCAAATCAGACTNNNNNNGTAGCCTCTGAACGCGAAG




AGAATCTTCCAAGAGCATGAACAG





18
100
GAAGCCCTTGATGGATACTGTGAACGGGAACAGGCTATAAAGACCCACCACCACTC




CTGTTGCCACCACCCTCCTAGCCCTGCCCGCGATGAGTGCTTTGCCCGTCAGGCGC




CATACCCCAACTATGACCGGGACATCCTGACCCTTGATTTCAGCCAAGTTACCCCC




AACCTCATGCAACATCTCTGTGGAAATGGAAGACTTCTCACCAAGCATAAACAGAT




TCCTGGGCTGATCCGGAACATGACTGCCCACTGCTGTGACCTGCCATTTCCAGAGC




AGGCCTGCTGTGCTGAGGAGGAGAAATCGGCCTTCATTGCAGACTTGTGTGGTTCC




CGACGTAACTTCTGGCGAGACTCTGCCCTCTGCTGTAACCTGAATCCTGGAGATGA




ACAGACCAACTGCTTCAACACTTATTATCTGAGGAATGTGGCTCTAGTGGCTGGAG




ACAAT





19
98.13084
TGGTTGTAGCTCCTCACTTGTCCAAGACCGAAGCAGCAACCAAACTGAACTTAGCC




TTTGGGCTGCTCTTGGTAGTCACAGAAATGCCCACGCTTCAGTCCCCTGGGCTTCC




AATGCTTCTGGACCTCTGAACCAGCCTGTGATGTCCAAGGAACCCCACGTCACGCT




CCAGGCTGCTGCTGGTCTGTCTCCCCCACAAGCTTCTCAAAGTCTGGTAGATTATG




ACAGCTCTGATGATTCTGAAGTAGAAGTCACAGACCAGCACTCAACAAACAGTAAA




CAAACATCTTTACAGCAAGAAGCAAAGAAGAAATTTCAGGACACAGTTAGAACAGG




TCCAGATGAAAAAGAACTTAGCATGGAGCCTCAATCAAGGCCTCTGGTTCCAGAAC




AATCTAATATTAATATTCCCTTCTCTGTTGACTGTGACATCTCCAAAGTAGGAATA




TCTTACAGGACACTGAAGTGCTTTCAGGAGCTACAGGGTGCCATTTACCGTTTGCA




GAAAAAAAATCTTTTCCCCTATAATGCCACA





20
64.77273
GCGGACTGTGTTCCAACCCCTTCAGCCGACTTGCCCCCTCCGTCCCTTCTCTTAAG




AGACCCATCCCTTGGCCCCCCACCCCACCCTCACCCAGACCTGCGGGTCCCTCAGA




GGGGGGTCAGGCCTCTTTCTCTTTCACCTTCATTTGCTGGCGTGAGCTGCGGGGGT




GTGTGTTTGTATGTGGGGAGTAGGTGTTTGAGGTTCCCGTTCTTTCCCTTCCCAAG




TCTCTGGGGGTGGAAAGGAGGAAGAGATATTAGTTACAGA
















TABLE 8







Summary of down regulated enzyme roles involved


in heart health and blood coagulation










Gene Expression



Gene
compared to Control
Role





Glycoprotein

GP-Ib, a surface membrane


Ib

protein of platelets,




participates in the formation




of platelet plugs by binding




to the A1 domain of von




Willebrand factor, which is




already bound to the




subendothelium.


Platelet

Collagen receptor belonging


glycoprotein

to the immunoglobulin-like


VI

protein family that is




essential for platelet




interactions with collagen


Platelet

The GPIb-V-IX complex


glycoprotein

functions as the von


IX precursor

Willebrand factor receptor




and mediates von




Willebrand factor-




dependent platelet adhesion




to blood vessels. The




adhesion of platelets to




injured vascular surfaces in




the arterial circulation is a




critical initiating event in




hemostasis


Coagulation

Factor XIII is activated by


factor XIII A

thrombin and calcium ion to


chain precursor

a transglutaminase that




catalyzes




the formation of gamma-




glutamyl- epsilon-lysine




cross-links between fibrin




chains, thus




stabilizing the fibrin clot.


Thromboxane

↓ platelet aggregation,


synthase

vasoconstriction,




lymphocyte proliferation




and bronchoconstriction


Angio-

contains a heparin-binding


associated

domain (dissociation


migratory cell

constant, 14 pmol) and


protein (AAMP)

mediates heparin-sensitive




cell adhesion


Dystrobrevin

Plays a role in the


binding protein

biogenesis of lysosome-


1 isoform a

related organelles such as




platelet dense




granule and melanosomes


Thrombospondin

Adhesive glycoprotein that


1

mediates cell-to-cell and




cell-to-matrix interactions.




Can bind to fibrinogen,




fibronectin, laminin, type V




collagen and integrins




alpha-V/beta-1, alpha-




V/beta-3 and alpha-IIb/beta-




3.


Thrombospondin

Metalloprotease activity


type 1 motif, 17


Thrombospondin



repeat containing


1


Integrin beta-7

Integrin alpha-4/beta-7


precursor

(Peyer's patches-specific




homing receptor LPAM-1)




is expected to play a role in




adhesive interactions of




leukocytes. It is a receptor




for fibronectin and




recognizes one or more




domains within the




alternatively spliced CS-1




region of fibronectin.




Integrin alpha-4/beta-7 is




also a receptor for




MADCAM1 and VCAM1.




It recognizes the sequence




L-D-T in MADCAM1.




Integrin alpha-E/beta-7




(HML-1) is a receptor for




E- cadherin.


Integrin linked

Receptor-proximal protein


kinase

kinase regulating integrin-




mediated signal




transduction. May act as a




mediator of inside-out




integrin signaling. Focal




adhesion protein part of the




complex ILK-PINCH. This




complex is considered to be




one of the convergence




points of integrin- and




growth factor-signaling




pathway. Could be




implicated in mediating cell




architecture, adhesion to




integrin substrates and




anchorage-dependent




growth in epithelial cells.




Phosphorylates beta-1 and




beta-3 integrin subunit on




serine and threonine




residues, but also AKT1




and GSK3B.










Effect of Nutrition on Genes Involved with Muscle and Bone Regulation


Ten down regulated genes are identified as related to body composition through regulation of bone and muscle. The genes spare muscle and bone deterioration by reducing nitric oxide production and glucocorticoid degradation of muscle. Down regulation of these genes results in a decrease in nitric oxide production and glucocorticoid response. The compositions disclosed herein may be part of a therapeutic regimen to treat animals suffering from diseases or disorders associated with or relating to muscle or bone. These genes and their putative role in muscle and bone regulation are detailed in Tables 9 and 10 below.









TABLE 9





Genes involved in muscle and bone regulation



















Sequence



Best current BLAST


ID No.
Gene
Probe
P-value
annotation





21
Capping
Cfa.1044.1.S1_at
0.001
PREDICTED: Canisfamiliaris



Protein


similar to F-actin capping  






protein beta subunit






(LOC478209); mRNA


22
Calmodulin
Cfa.4168.1.S1_at
0.01
PREDICTED: Canisfamiliaris






similar to calmodulin 1;






transcript variant 3






(LOC480416); mRNA


23
Dynein
Cfa.4942.1.A1_s_at
0.001
PREDICTED: Canisfamiliaris






similar to dynein;






cytoplasmic; heavy






polypeptide 2; transcript






variant 2 (LOC479461); mRNA


24
Dynactin
Cfa.1807.1.S1_at
0.01
PREDICTED: Canisfamiliaris






similar to dynactin 3






isoform 2; transcript






variant 1 (LOC474750); mRNA


25
Kinesin
Cfa.10496.1.S1_s_at
0.01
PREDICTED: Canisfamiliaris






similar to Kinesin-like






protein KIF2 (Kinesin-2)






(HK2); transcript variant 5






(LOC478071); mRNA


26
Heat Shock
CfaAffx.11022.1.S1_s_at
0.01
PREDICTED: Canisfamiliaris



Protein 1


similar to Heat shock



(HSP90)


protein HSP 90-beta (HSP 84)






(Tumor specific






transplantation 84 kDa






antigen) (TSTA)






(LOC611252); mRNA


27
PPlase
CfaAffx.1740.1.S1_at
0.01
PREDICTED: Canisfamiliaris






similar to Peptidyl-prolyl






cis-trans isomerase C






(PPlase) (Rotamase)






(Cyclophilin C)






(LOC481480); mRNA


28
Calcinuerin
Cfa.19761.1.S1_at
0.001
PREDICTED: Canisfamiliaris






similar to protein






phosphatase 3 (formerly 2B);






catalytic subunit; beta






isoform (calcineurin A






beta); transcript variant 5






(LOC479248); mRNA


29
Protein
CfaAffx.408.1.S1_s_at
0.01
PREDICTED: Canisfamiliaris



kinase C


similar to myeloid-






associated differentiation






marker (LOC611521); mRNA


30
Protein
Cfa.15485.1.A1_s_at
0.01
PREDICTED: Canisfamiliaris



Kinase C


similar to protein kinase C



Binding


binding protein 1 isoform b;



Protein


transcript variant 11






(LOC477252); mRNA












Sequence
% match of probe



ID No.
sequence to BLAST hit
Probe Target Sequence





21
44.87179
AGGTCCCGTAACACCGGCATCGCGACCGCACAGCGCCATCTCCCC




AGAATAAAGCCCAGTAAACACCCCTGNNNNNNANNNNNANNNNNC




ACCACGTTTTGCTATCAGAACTCTCCTTGTTTCCAGAGCCCGTGT




GCTTTTGTTTGCCCCAGCCCC





22
52.54237
CCACCCATGGTGACGATGACACACATCCTGGTGGCATGCGTGTGT




TGGTTTAGCGTTGTCTGCGTTGTACTAGAGCGAAAATGGGTGTCA




GGCTTGTCACCATTCACACAGAAATTTAAAAAAAAAAAAAAAANN




NNGANAAAAAACCTTTACCAAGGGAGCATCTTTGGACTCTCTGTT




TTTAAAACCTCCTGAACCATGACTTGGAGCCAGCAGATTAGGCTG




TGGCTGTGGACTTCAGCACAACCATCAACATTGCTGATCAAGAAA




TTACAATATACGTCCATTCCAAGTT





23
99.6016
ATACCTCAGAGGTCTCGTAGCTCGTGCCCTTGCCATCCAGAGCTG




GGTGGNAGAGAGCTGAGAAGCAGGCTCTTTTCTCTGATACACTCG




ACCTGTCAGAACTCTTCCACCCAGACACATTTCTCAATGCTCTTC




GCCAGGAAACAGCAAGGGTGATGGGCTGCTCTGTGGATAGCCTTA




AGTTTGTAGCTTCGTGGAAAGGTCGGCTGCAAGAAGCAAAGCTGC




AGATCAAGATGGGCGGCTTGCTTCTGGAAGGCTGCAGTTTTGACG




GGAGCCGGCTCTCTGAAAACCACCACGATTCTCCAAGTGTGTCAC




CAGTTCTCCCTTGCTGTGTTGGCTGGATTCCCCAGGGTGCATATG




GTCCCTATTCTCCTGACGAGTGCATATCTCTGCCCGTGTACACGA




GCGCTGAGAGGGATCGTGTGGTAGCCAACATCGACGTCCCGTGTG




GGGGCANCCAAGACCAGTGGATTCAGTGTGGAGCCGCTCTGTTTC




TAAAAAA





24
100
AGGACGACAAGGCTCAGGACGCAAAGTGTGAAACTGCCTTTGTAA




CAGGGCAGAAGCAGCTCTGTATTGGATTCACAACCTACCTATCTG




CATTCAGGTGGGGCTCGGAGGTCAGAGGTCTGGCTACTTGAGGTT




TGCTGTTTGCAC





25
99.73046
AGCCACAGCATTTCCTTTTAACTTGGTTCAATTTTTGTAGCAAGA




CTGAGCAGTTCTAAATCCTTTGCGTGCATGCATACCTCATCAGTG




NACTGTACATACCTTGCCCTCTCCCAGAGACAGCTGTGCTCACCT




CTTCCTGCTTTGTGCCTTGACTAAGGCTTTTGACCCTAAATTTCT




GAAGCACAGCCAAGATAAAGTACATTCCTTAATTGTCAGTGTAAA




TTACCTTTATTGTGTGTACATTTTTACTGTACTTGAGACATTTTT




TGTGTGTGACTAGTTAATTTTGCAGGATGTGCCATATCATTGAAT




GGAACTAAAGTCTGTGACAGTGGACATAGCTGCTGGACCATTCCA




TCTTACATGTA





26
100
GGTGCTACTGTTTGAAACAGCTCTACTCTCCTCCGGCTTCTCACT




GGAGGATCCCCAGACTCACTCCAACCGCATTTACCGCATGATAAA




GCTAGGCCTGGGCATCGATGAAGATGAAGTGGCAGCGGAGGAACC




CAGTGCTGCTGTTCCTGATGAGATCCCTCCACTTGAGGGTGATGA




GGATGCCTCTCGCATGGAAGAAGTC





27
100
GACATCACCAGTGGAGACGGCACCGGCGGTATAAGCATTTATGGT




GAGACGTTTCCAGATGAAAACTTCAAACTGAAGCATTATGGCATT




GGTTGGGTCAGCATGGCCAACGCTGGGCCTGACACCAACGGCTCT




CAGTTCTTTATCACCTTGACCAAGCCCACTTGGTTGGATGGCAAA




CATGTGGTATTTGGAAAAGTCCTTGATGGAATGACTGTGGTCCAC




TCCATAGAACTTCAGGCAACCGATGGGCACG





28
98.83382
GAATTAACAATCTGCTTGAGCCCCAAAACACTACTTATGCACTTC




ACTTGCCAAAAGATTTGNGCAAGGTTTTGTACCCTGGTAAATGAT




GCCAAAGTTTGTTTTCTGTGGTGTTTGTCAAATGTTCTATGTATA




ATTGACTGTCTGTAACATGCTGTTTNCTTCCTCTGCAGATGTAGC




TGCTTTCCTAAATCTGTCTGTCTTTCTTTAGGTTAGCTGTATGTC




TGTAAAAGTATGTTAAATTAAATTACTCTATCAGACGCTTGTCTG




TCTTTTGATGTAGAAGCAACTTTGTAGCACCTTGTTTTGAGGTNN




GCTGCATTTGTTGCTGTACTTTGTGCAT





29
99.64664
TTCAGTTCCTGTCTCATGGCCGCTCCCGGGACCATGCCATCGCCG




CCACTGCCTTCTCCTGCATCGCTTGTGTGGCTTATGCCACCGAAG




TGGCCTGGACCCGGGCCCGTCCCGGAGAGATCACCGGCTACATGG




CCANTGTGCCGGGCCTGCTCAAGGTGCTGGAGACCTTTGTGGCCT




GCATCATCTTCGCCTTCATCAGCAACCCCTCCCTGTACCAGCACC




AGCCGGCCCTGGAGTGGTGTGTGGCCGTCTACTCCATCTGTTTCA




TCCTGGCGGCTGTGGCCATCCTACTGAACCTGGGGGACTGCACCA




ACATGCTGCCCATCTCCTTCCCCAGTTTCCTGTCGGGCCTGGCCC




TGCTCTCCGTCCTGCTGTATGCCACGGCTCTGGNTCTCTGGCCGC




TCTACCAGTTCAACGAGAAGTATGGTGGCCAGCCCCGTCGGTCGA




GGGATGTTAGCTGCGCCGACAGGCACACCTACTACGTGTGTACCT




GGGACCGCCGCCTGGCTGTGGCCATCCTGACAGCCATCAACCTGC




TGGCTTACGTGGCTGACCTGGTGTAC





30
100
GGAGCAGTCAGAACTAAGACATGGTCCGTTTTACTATATGAAGCA




GCCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGATGGACG




GAA
















TABLE 10







Summary of genes affecting glucocorticoid


receptors and nitric oxide production










Gene Expression



Gene
Compared to Control
Role





Kinesin

Transport of organelles




from the (−) to (+) ends.




Binds microtubules.




ATPase activity


Capping

Part of dynactin-dynein


Protein

hetero-complex


Calmodulin

Directly influences calcium




dependent dynein activity.




Binds to nitric oxide




synthase and up regulates




the production of nitric




oxide


Dynein

Transport of organelles




from the (+) to (−) ends.




Binds microtubules.




ATPase activity and force




production


Dynactin

Cytoplasmic dynein




activator. Binds




mirotubules and ↑average




length of dyein movements.


Heat Shock

Necessary for


Protein 1 beta

glucocorticoid receptor


(HSP90)

binding and fast transport of




dynein complex to nucleus.




Calcinuerin activity.




Enhances the nitric oxide




production by binding to




nitric oxide synthase


PPIase

Necessary for




dynein/glucocorticoid




interaction and movement


Calcinuerin

Part of dynactin-dynein




hetero-complex. Catalyzes




the conversion of arginine




to citrulline and nitric oxide


Protein

Calcium-activated,


kinase C

phospholipid-dependent,




serine- and threonine-




specific enzyme.


Protein Kinase

Associated with protein


C Binding

kinase C


Protein










Effect of Nutrition on Genes Involved with DNA Damage/Protection and Neural Function


Eleven genes are identified that are related to DNA damage/protection and neural function. With regard to the latter, the genes identified are important for rebound potentiation; they are believed to have a potential role in motor learning. Interestingly, of these genes, all were down regulated except for of gamma-aminobutyric acid (GABA) A receptor, gamma 2 which was up regulated. The compositions disclosed herein may be part of a therapeutic regimen to treat animals suffering from diseases or disorders associated with or relating to DNA damage/protection and neural function. The identity of these genes and their putative role in DNA damage/protection and neural function are described in Tables 11 and 12 below.









TABLE 11





Genes involved in DNA damage/protection and neural function



















Sequence






ID No.
Gene
Probe
P-value
Best current BLAST annotation





31
Gamma-
CfaAffx.26362.1.S1_at
<0.01

Homo sapiens gamma-aminobutyric




aminobutyric acid


acid (GABA) A receptor; gamma 2



(GABA) A


(GABRG2); transcript variant 1;



receptor, gamma 2


mRNA


22
Calmodulin
Cfa.4168.1.S1_at
<0.01
PREDICTED: Canis familiaris






similar to calmodulin 1;






transcript variant 3






(LOC480416); mRNA


28
Calcinuerin
Cfa.19761.1.S1_at
<0.001
PREDICTED: Canis familiaris






similar to protein phosphatase






3 (formerly 2B); catalytic






subunit; beta isoform






(calcineurin A beta);






transcript variant 5






(LOC479248); mRNA


32
Calcium/calmodulin-
Cfa.3884.1.S1_at
<0.01

Homo sapiens PTEN induced




dependent


putative kinase 1 (PINK1); mRNA



protein kinase II





33
Adenylate
CfaAffx.5462.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



cyclase-associated


similar to Adenylyl cyclase-



protein 1


associated protein 1 (CAP1);






transcript variant 1






(LOC475317); mRNA


34
Protein
Cfa.6174.1.A1_at
<0.01
PREDICTED: Canis familiaris



Phosphatase I


similar to protein phosphatase






1A isoform 1; transcript






variant 2 (LOC480344); mRNA


35
Diazepam
CfaAffx.14836.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



binding inhibitor


similar to peroxisomal D3; D2-






enoyl-CoA isomerase isoform 1






(LOC478706); mRNA


36
Tumor protein p53
Cfa.1611.1.A1_s_at
<0.01
PREDICTED: Canis familiaris



binding protein


similar to tumor protein p53






binding protein; 1; transcript






variant 4 (LOC478274); mRNA


4
Ubiquitin
CfaAffx.275.1.S1_s_at
<0.001
PREDICTED: Pan troglodytes



conjugating


LOC461941 (LOC461941); mRNA



enzyme E2D 3





5
NEDD8 ultimate
Cfa.12556.1.A1_s_at
<0.001
PREDICTED: Canis familiaris



buster-1


similar to NEDD8 ultimate






buster-1 (NY-REN-18 antigen)






(LOC475542); mRNA


37
BCL2-associated
CfaAffx.6742.1.S1_s_at
<0.01

Canis familiaris BCL2-




X protein (BAX)


associated X protein (BAX);






mRNA












Sequence
% match of probe



ID No.
sequence to BLAST hit
Probe Target Sequence





31
100
CCTCTTCTTCGGATGTTTTCCTTCAAGGCCCCTACCATTGAT


22
52.54237
CCACCCATGGTGACGATGACACACATCCTGGTGGCATGCGTGTGTTGGTTTAGCGTTGT




CTGCGTTGTACTAGAGCGAAAATGGGTGTCAGGCTTGTCACCATTCACACAGAAATTTA




AAAAAAAAAAAAAAANNNNGANAAAAAACCTTTACCAAGGGAGCATCTTTGGACTCTCT




GTTTTTAAAACCTCCTGAACCATGACTTGGAGCCAGCAGATTAGGCTGTGGCTGTGGAC




TTCAGCACAACCATCAACATTGCTGATCAAGAAATTACAATATACGTCCATTCCAAGTT


28
98.83382
GAATTAACAATCTGCTTGAGCCCCAAAACACTACTTATGCACTTCACTTGCCAAAAGAT




TTGNGCAAGGTTTTGTACCCTGGTAAATGATGCCAAAGTTTGTTTTCTGTGGTGTTTGT




CAAATGTTCTATGTATAATTGACTGTCTGTAACATGCTGTTTNCTTCCTCTGCAGATGT




AGCTGCTTTCCTAAATCTGTCTGTCTTTCTTTAGGTTAGCTGTATGTCTGTAAAAGTAT




GTTAAATTAAATTACTCTATCAGACGCTTGTCTGTCTTTTGATGTAGAAGCAACTTTGT




AGCACCTTGTTTTGAGGTNNGCTGCATTTGTTGCTGTACTTTGTGCAT


32
24.10714
GGTGCTGTTCACCACAGTAAGTGGCCTCTCAGTGTTGCTGACCAAAGTGTGAAATCCTA




GAGCTTCAGGGGAGAGGACGTGGGGGAAATCCGGGGCTTGACTTTATAATAGGATTATA




GAGATGAAAAGTACACCTTGCTTTAGGCAACAGTTGGGATTCCTAAGACGCATGTGTAA




GAGCATATGTGAAATCCCTTCCCCATTGTTGATCTCTACTCACAGAATTTTGTCTTTAT




TATGGTGTAAGAATCACTCTTAAAGCCACATATTCAATTCAAAGCAAATACGTGTTCTG




CAGTTGCAAATGTGTATTTAATTCTTCACAATTCCTGTAAG


33
100
GAAACTCGGTCTGGTGTTCGATGACGTCGTGGGCATTGTGGAGATAATCAATAGTAGGG




ATGTCAAAGTTCAGGTAATGGGTAAAGTGCCAACCATTTCCATCAACAAAACAGATGGC




TGCCATGTTTACCTGAGCAAGAATTCCCTGGATTGCGAAATAGTCAGTGCCAAATCTTC




TGAGATGAATGTCCTCATTCCTACTGAAGGCGGTGACTATAATGAATTCCCAGTCCCTG




AGCAGTTCAAGACCCTATGGAATGGGCAGAAGTTGGTCACCACAGTGACAGAAATTGCT




GGATAAGCGAAGTGCCACTGGGTTCTTTGCCCTCCCCCTCACACCATGGGATAAATCTA




TCAGGACGGTTCTTTTCTAGATTTCCTTTACCTTTCTGCTCTTAAACTGCTT


34
100
AAATCTTACGAAGCCCAATATGCAGGGAGTTAACTGAAAACTATCTTGGCAGTGAGGTT




GGCACTGTTGATAAAGCTGGTCCCTTCCTTTAACTGTCTTTTAGGTTGTTCTTGCCTTG




TTGCCAGGAGTATTGCAGGTAATACAGTATATTCATAAGAATATCAATCTTGGGGCTAA




AATGCCTTGATTCTTTGCACCTCTTTTACAAGTCCTTACGTTGAATTACTAATTGATAA




GCAGCAGCTTCCTACATATAGTAGGAGACTGCCACGTTTTTGCTATCATGATTGGCTGG




GCCTGCTGCTGTTCCTAGTAAGGTAT


35
100
AATGGTGCCATCTTACTGAGGGATTTTGTAGGCTGTTTTATAGATTTTCCTAAGCCTCT




GGTTGCAGTGATAAATGGTCCAGCCATAGGAATCTCCGTCACCATTCTCGGGCTATTCG




ATCTTGTGTATGCTTCCGACAGGGCAACATTTCACACTCCTTTTACTCACCTGGGCCAA




AGTCCAGAAGGATGTTCCTCCTATACTTTTCCCAAGATAATGGGCCAAGCCAAGGCAGC




AGAGATGCTCATGTTTGGAAAGAAGTTAACAGCTAGAGAAGCCTGTGCTCAAGGACTTG




TTACTGAAGTTTTTCCCGATAGCACTTTTCAGAAAGAAGTTTGGACCAGGCTGAAAGCA




TATTCAAAACTCCCCCGAAATACCTTGCATATTTCCAAACAGAGCATCAGAAATCTTGA




GAAAGAAAAGCTACATGCTGTTAACGCAGAAGAAAACAGCGTCCTCCAGGAAAGGTGGC




TGTCAGACGAATGCATAAATGCAGTCATGAGCTTCTTATCCCGGAAGGCCAA


36
97.90874
ATGATAGTTGCCATGCCAACCAGCTCCAGAATTACCGCAATTATTTGTTGCCTGCAGGG




TACAGCCTTGAGGAGCAAAGAATTCTGGATTGGCAACCCCGTGAAAACCCTTTCCACAA




TCTGAAGGTACTCTTGGTGTCAGACCAACAGCAGAACTTCCTGGAGCTCTGGTCTGAGA




TCCTCATGACCGGGGGGGCAGCCTCTGTGAAGCAGCACCATTCAAGTGCCCATAACAAA




GATATTGCTTTAGGGGTATTTGACGTGGTGGTGACGGATCCCTCATGCCCAGCCTCGGT




GCTGAAGTGTGCTGAAGCATTGCAGCTGCCTGTGGTGTCACAAGAGTGGGTGATCCAGT




GCCTCATTGTTGGGGAGAGAATTGGATTCAAGCAGCATCCAAAATACAAACATGATTAT




GTTTCTCACTAATACTTGGTCTTAACTGATTTTATTCCCTGCTGTTGTGGAGATTGTGN




TTNNNCCAGGTTTTAAATGTGTCTTGTGTGTAACTGGATTCCTTGCATGGATCT


4
97.19626
GATTTGGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCTGTTTGGGATGATATGTT




TCATTGGCAAGCCACAATTATAGGACCTAATGACAGCCCATATCAAGG


5
99.12473
GGAATGGGCTACTCTACTCATGCAGNCAAGCAGGNCCTGCATCAGGCCAGTGGGAACCTGGACGAAGCCCTGAAGATTCTTCTCAGCAATCCTCAG




ATGTGGTGGTTAAATGATTCAGATC




CTGAAACGANCAACCAGCAAGAAA




GTCCTTCCCAGGAAAACATTGACCA




ACTGGTGTACATGGGCTTCGACGC




TGTGGTGGCTGATGCTGCCTTGAG




AGTGTTCAGGGGAAACGTGCAGCT




GGCAGCTCAGNCCCTCGCCCACAA




CGGAGGAACTCTTCCTCCTGACCT




GCAGCTCTTGGTGGAAGACTCTTC




ATCAACGCCATCCACGTCCCCTTC




CGACTCCGCAGGTACCTCTAGTGC




CTCAACAGATGAAGATATGGAAACC




GAAGCTGTCAATGAAATACTGGAA




GATATTCCAGAACATGAAGAAGATTATCTTGACTCAACACTGGAAG


37
100
GGCCCACCAGCTCTGAGCAGATCATGAAGACAGGGGCCCTTTTGCTT




CAGGGTTTCATCCAAGATCGAGCA




GGGCGAATGGGGGGAGAGACACC




TGAGCTGCCCTTGGAGCAGGTGCC




CCAGGATGCATCCACCAAGAAGCT




GAGCGAATGTCTCAAGCGCATCGG




AGATGAACTGGACAGTAACATGGA




GTTGCAGAGGATGATCGCAGCTGT




GGACACAGACTCTCCCCGTGAGGT




CTTCTTCCGAGTGGCAGCTGAGAT




GTTTTCTGATGGCAACTTCAACTGG




GGCCGGGTTGTTGCCCTCTTCTAC




TTTGCCAGCAAACTGGTGCTCA
















TABLE 12







Summary of genes important for rebound


potentiation and DNA integrity










Gene Expression



Gene
Compared to Control
Role





Gamma-amino-

Involved in single channel


butyric acid

conductance (Cl— channel)


(GABA) A


receptor,


gamma 2


Calmodulin

Influx of calcium results




in calcium/calmodulin




complex which activates




CaMKII and calcineurin


Calcinuerin

Involved in the pathway




for RP suppression


Calcium/

Involved in induction and


calmodulin-

suppression of RP


dependent


protein


kinase II


Adenylate

Adenlyl cyclase is involved


cyclase-

in suppression of RP


associated


protein 1


Protein

Dephosphorylates


Phosphatase

components in stress-


I

activated pathways.




Active PP-1 results in




CaMKII inhibition and




RP suppression


Diazepam

Displaces benzodiazepine


binding

Down regulates the effects


inhibitor

of GABA


Tumor protein

Keep the cell from


p53 binding

progressing through the cell


protein

cycle if there is damage to




DNA present.


Ubiquitin

The regulated proteolysis


conjugating

of proteins by proteasomes


enzyme E2D 3

removes denatured,


(and NEDD8

damaged or improperly


ultimate

translated proteins from


buster-1)

cells and regulates the level




of proteins like cyclins or




some transcription factors


BCL2-

Accelerates programmed


associated

cell death by binding to, and


X protein

antagonizing the apoptosis




repressor BCL2










Effect of Nutrition on Genes Involved with Glucose Metabolism


Twenty four genes associated with glucose metabolism are down regulated in animals fed the super senior diet which would suggest that these animals are utilizing fat (fat oxidation) instead of glucose as a fuel source. The compositions disclosed herein may be part of a therapeutic regime in diabetic animals and/or for obesity prevention or treatment in an animal. These down regulated genes are identified and their putative role in glucose metabolism described in detail below in Tables 13 and 14.









TABLE 13





Genes involved in Glucose Metabolism



















Sequence






ID No.
Gene
Probe
P-Value
Best current BLAST annotation





38
Phosphorylase
Cfa.10856.1.S1_at
<0.01
PREDICTED: Canis familiaris



kinase


similar to phosphorylase






kinase beta; transcript






variant 2 (LOC478139); mRNA


39
Phosphorylase
Cfa.10412.1.A1_s_at
<0.01
PREDICTED: Canis familiaris






phosphorylase; glycogen;






liver; transcript variant 1






(PYGL); mRNA


40
Glycogen
Cfa.913.1.A1_s_at
<0.01
PREDICTED: Canis familiaris



synthase kinase 3


similar to Glycogen synthase






kinase-3 beta (GSK-3 beta);






 transcript variant 1






(LOC478575); mRNA


22
Calmodulin
Cfa.4168.1.S1_at
<0.01
PREDICTED: Canis familiaris






similar to calmodulin 1;






transcript variant 3






(LOC480416); mRNA


29
Protein Kinase C
CfaAffx.408.1.S1_s_at
<0.01
PREDICTED: Canis familiaris






similar to myeloid-associated






differentiation marker






(LOC611521); mRNA


30
Protein Kinase C
Cfa.15485.1.A1_s_at
<0.01
PREDICTED: Canis familiaris



Binding Protein


similar to protein kinase C






binding protein 1 isoform b;






transcript variant 11






(LOC477252); mRNA


41
Hexokinase 3
Cfa.19125.2.S1_at
<0.01

Macaca fascicularis testis







cDNA; clone: QtsA-14856;






similar to human receptor






associated protein 80






(RAP80); mRNA; RefSeq:






NM_016290.3


42
Fructose 1,6
CfaAffx.26135.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



bisphosphatase


aldolase A; transcript






variant 1 (LOC479787); mRNA


43
Glyceraldehyde
AFFX-Cf_Gapdh_3_at
<0.01

Canis familiaris




3-phosphate


glyceraldehyde-3-phosphate



dehydrogenase


dehydrogenase (GAPDH); mRNA


44
Glucose 6-phosphate
Cfa.19351.1.S1_at
<0.01

Homo sapiens cDNA FLJ30869




dehydrogenase


fis; clone FEBRA2004224


45
Enolase
CfaAffx.30133.1.S1_s_at
<0.01
PREDICTED: Canis familiaris






similar to T21B10.2b;






transcript variant 1






(LOC479597); mRNA


46
Lactate
Cfa.300.1.S1_at
<0.01
PREDICTED: Canis familiaris



dehydrogenase


similar to L-lactate






dehydrogenase A chain (LDH-A)






(LDH muscle subunit) (LDH-M)






(Proliferation-inducing gene






19 protein); transcript






variant 1 (LOC476882); mRNA


47
Citrate lyase
Cfa.10361.2.S1_at
<0.01
PREDICTED: Canis familiaris






similar to citrate lyase beta






like (LOC476974); mRNA


48
Glycerol kinase
CfaAffx.21204.1.S1_s_at
<0.01
PREDICTED: Canis familiaris






similar to glycerol kinase






isoform 2; transcript variant






8 (LOC480872); mRNA


49
Transketolase
CfaAffx.13684.1.S1_s_at
<0.01

Homo sapiens transketolase







(Wernicke-Korsakoff






syndrome); mRNA (cDNA clone






MGC: 15349 IMAGE: 4310396);






complete cds


50
Ribulose
Cfa.13084.1.A1_s_at
<0.01

Homo sapiens SLIT-ROBO Rho




phosphate 3-epimerase


GTPase activating protein 2






(SRGAP2); mRNA


51
Ribose 5-phosphate
Cfa.335.2.S1_at
<0.01
PREDICTED: Canis familiaris



isomerase


similar to ribose 5-phosphate






isomerase A (ribose 5-






phosphate epimerase)






(LOC475755); partial mRNA


52
Cytochrome c
CfaAffx.4942.1.S1_s_at
<0.01
PREDICTED: Canis familiaris



oxidase polypeptide


similar to cytochrome c



VIIa-liver/heart,


oxidase; subunit 7a 3



mitochondrial


(LOC611134); mRNA



precursor





53
Cytochrome c
Cfa.15065.1.S1_at
<0.01
PREDICTED: Canis familiaris



oxidase subunit


similar to Cytochrome c



VIII liver form


oxidase polypeptide VIII-






liver; mitochondrial






precursor (Cytochrome c






oxidase subunit 8-2)






(LOC476040); mRNA


54
Ubiquinolucytochrome
Cfa.1425.2.A1_at
<0.01
PREDICTED: Canis familiaris



c reductase


similar to Ubiquinol-






cytochrome-c reductase






complex core protein 2;






mitochondrial precursor






(Complex III subunit II);






transcript variant 1






(LOC479815); mRNA


55
ATP synthase
CfaAffx.3186.1.S1_s_at
<0.01
PREDICTED: Canis familiaris






similar to ATP synthase; H+






transporting; mitochondrial






F0 complex; subunit c isoform






2a precursor (LOC477595);






mRNA


56
NADH-
Cfa.4415.1.S1_at
<0.01
PREDICTED: Canis familiaris



ubiquinone


similar to NADH-ubiquinone



oxidoreductase


oxidoreductase MLRQ subunit






(Complex I-MLRQ) (CI-MLRQ)






(LOC477682); mRNA


57
Facilitated glucose
Cfa.1370.1.A1_at
<0.01

Homo sapiens cDNA FLJ44038




transporter/Glucose


fis; clone TESTI4028880;



transporter-like


highly similar to Glucose



protein III (GLUT3)


transporter type 3; brain









Sequence
% match of probe



ID No.
sequence to BLAST hit
Probe Target Seq.





38
99.3392
GAAAGTTCACCACTGCATGTTTTATGATCAGATAACTCATTGAAATGAGTCTTTGCTCTT




TAGACTAAATTCCCACCTAGTACTGCCATTAAAATGAATTTGCCAGCTGGTGTGCATACT




GGAAATGAAAAGATACTGAAAGAATGGAACGAATGGTGAGCTTAACTCAGTGGCACTGTC




ATACTGGAAAAATACAGTAAAATCATAAAAACAGATCTGCCAGCTGATGTTTTTATTCTC




AGAAACAGCATTGTTGATAATATTTTAGTATACAGAGCTACTGTACAATTTTTACCTTGN




AAACATGACTGTGGTTTTGTATTTGTGTTGACTTTAGGGGTTGGGATAAAATNCAGTATA




ATATATACCTTATCAAACNTTTTCTTTGAGCTCTTACTAAAAATATGGCATGCATAAGAT




TGTTCAGAAGAGTAGACTGTTAACCTAGTTTGTA





39
99.36306
CTTCCAGAGCTGAAGCTGGCCATTGATCNAAATTGACAATGGCTTCTTCTCTCCCAAGCA




GCCTGNCCTCTTCAAAGATTTAATCAATATGCTATTTTATCATGACAGGTTTAAAGTCTT




CGCAGACTATGAAGCCTATGTCAAGTGTCAAGAAAAAGTCAGCCAGCTGTACATGAATCC




AAAGGCCTGGAACACAATGGTACTCAAAAACATAGCTGCCGCAGGGAAGTTCTCTAGTGA




CCGAACAATTAAGGAATATGCCAGGGACATCTGGAACATGGAACCTTCAGATCTCAAGAT




TTCCCTATCCAATG





40
99.49622
GACTCCACCGGAGGCAATTGCACTGTGTAGCCGTCTGCTGGAGTATACACCAACTGCCCG




ATTGACACCACTGGAAGCTTGTGCACATTCATTTTTTGATGAATTAAGGGACCCAAATGT




CAAACTACCAAATGGGCGAGACACACCTGCACTCTTCAACTTCACCACTCAAGAACTGTC




AAGTAATCCACCTCTAGCTACCATCCTTATTCCTCCTCATGCTCGGATTCAAGCAGCTGC




TTCAACCCCTACAAATGCCACAGCAGCCTCAGATGCTAATGCCGGAGACCGTGGACAGAC




GAACAATGCCNCTTCTGCATCAGCTTCTAACTCCACCTGAACAGTCCCGAGCAGCCAGCT




GCACAGGAAGAACCACCAGTTACTTGAGTGTCACTCA





22
52.54237
CCACCCATGGTGACGATGACACACATCCTGGTGGCATGCGTGTGTTGGTTTAGCGTTGTC




TGCGTTGTACTAGAGCGAAAATGGGTGTCAGGCTTGTCACCATTCACACAGAAATTTAAA




AAAAAAAAAAAAANNNNGANAAAAAACCTTTACCAAGGGAGCATCTTTGGACTCTCTGTT




TTTAAAACCTCCTGAACCATGACTTGGAGCCAGCAGATTAGGCTGTGGCTGTGGACTTCA




GCACAACCATCAACATTGCTGATCAAGAAATTACAATATACGTCCATTCCAAGTT





29
99.64664
TTCAGTTCCTGTCTCATGGCCGCTCCCGGGACCATGCCATCGCCGCCACTGCCTTCTCCT




GCATCGCTTGTGTGGCTTATGCCACCGAAGTGGCCTGGACCCGGGCCCGTCCCGGAGAGA




TCACCGGCTACATGGCCANTGTGCCGGGCCTGCTCAAGGTGCTGGAGACCTTTGTGGCCT




GCATCATCTTCGCCTTCATCAGCAACCCCTCCCTGTACCAGCACCAGCCGGCCCTGGAGT




GGTGTGTGGCCGTCTACTCCATCTGTTTCATCCTGGCGGCTGTGGCCATCCTACTGAACC




TGGGGGACTGCACCAACATGCTGCCCATCTCCTTCCCCAGTTTCCTGTCGGGCCTGGCCC




TGCTCTCCGTCCTGCTGTATGCCACGGCTCTGGNTCTCTGGCCGCTCTACCAGTTCAACG




AGAAGTATGGTGGCCAGCCCCGTCGGTCGAGGGATGTTAGCTGCGCCGACAGGCACACCT




ACTACGTGTGTACCTGGGACCGCCGCCTGGCTGTGGCCATCCTGACAGCCATCAACCTGC




TGGCTTACGTGGCTGACCTGGTGTAC





30
100
GGAGCAGTCAGAACTAAGACATGGTCCGTTTTACTATATGAAGCAGCCACTCACCACAGA




CCCTGTTGATGTTGTACCGCAGGATGGACGGAA





41
76.70683
TAATGACTGCCAACTCACTGTTTGTTGGAGTTATATGCAGAAATAAAGNCCAAGTCTTCA




GAAACAGGCTTCAGGATGCCCTCACCAGGGATGGAAGAGGCAGGCTGCAGCAAAGAGATG




CAGAGTTCCCTTGCACATCTCGACTTAAATGAGTCTCCCATCAAGTCTTTTGTTTCCATT




TCAGAAGCCACAGATTGCTTAGTGGACTTTAAAAAGCAACTTAACGTTCGGCAAGGTAGT




CGGACACGGACCAAAGCAGGCAGAGGAAGAAGGAGAAAACCCTGAATTTCTAGGGTCCAG




ACACCCGACAAAACCATTAGCAATAGGGGTGGGCCGTGTCATTAAGTCTTAGTGGCTTCT




GTTTCATTGTTGAACAAGTTTTTTGGCCCNGCAGTTTTCACCACCAGCACCAACTCAGCA




TTCTTGTTTTGATGTTTTCTATAAGCTATACAGACAATTGTGTATAGTATTCTGTTTTAT




AACAGTCTGGATTCACTT





42
100
AGTGGCGCTGTGTGCTGAAAATTGGGGAACACACTCCCTCAGCCCTTGCGATCATGGAAA




ATGCCAACGTTCTGGCCCGTTAT





43
100
AGCTCACTGGCATGGCCTTCCGTGTCCCCACCCCCAATGTATCAGTTGTGGATCTGACCT




GCCGCCTGGAGAAAGCTGCCAAATATGACGACATCAAGAAGGTAGTGAAGCAGGCATCGG




AGGGACCCCTCAAAGGCATCCTGGGCTACACTGAGGACCAGGTGGTCTCCTGTGACTTCA




ACAGTGACACCCACTCTTCCACCTTCGACGCCGGGGCTGGCATTGCCCTCAATGACCACT




TTGTCAAGCTCATTTCCTGGTATGACAATGAATTTGGCTACAGCAACCGGGTGGTGGACC




TCATGGTCTACATGG





44
15.11194
GAATGTGTTGGCAGACTGAGGCCCCCCATGTTTTTAATGCGCACTGGGGACAACCATCTA




AGGTCTAGAAACTTTTGGACCATAGGAAAGATAGGTTTATGGTCCTCTTCCAGATGCAGC




CCTAGGAGAGCATTCCCATGGGGTCTCTGGATCCCTTTCNTTGCTCTGTGAGGCTCTGTG




ACCACCTTTTGNNNTGNNGGGGGCAGGGGGNCTTCCTCAGCTCCGCCTCCAGTGCCCCCA




GGTCCCCCACGGCTCACAGTCCNTGAAAATTCAGAGCTGCCCTGTAAGGATTTTGTCCAC




TGGGCAATTCAGATATACTTCGATATCCCTGAGAAAGAAGAGGCAGCAGCAAACACTCCC




NAGGGCATCTGTCTCAGNANTCTCTCNTTGNATGAGACAGAAGCCTACTTTTCAGAAANC




TTATCANGGNTACTTTATAAGAAACTTTTTTTTTTTTNCTAAAATCAGACAAAAGGTGGC




TTNTGCATATTCTTNATTAATAACTGTGTCTTTGTCTCCTCTGCTTAACTTTAGGA





45
97.72257
GGTACATCACGCCTGATCAGCTGGCTGACCTCTACAAGTCCTTCATCAGGGACTACCCAG




TGGTGTCTATCGAAGACCCCTTCGACCAGGATGACTGGGAAGCTTGGCAGAAATTCACTG




CCAGCGCTGGAATCCAGGTGGNGGGGGANGATCTCACCGTGACCAACCCAAAGCGGATTT




CCAAGGCTGTGGGCGAGAAATNGTGCAACTGCCTCCTGCTTAAAGTGAACCAGATTGGCT




CTGTGACCGAGTCTCTTCAGGCGTGCAAGCTGGCCCAGTCCAATGGGTGGGGCGTCATGG




TGTCGCATCGCTCCGGGGAGACCGAAGATACCTTCATCGCTGACCTGGTGGTGGGANTCT




GCACTGGGCAGATCAAGACGGGTGCACCATGCAGATCTGAGCGCTTGGCCAAGTACAACC




AGATCCTCAGAATTGAAGAGGAACTGGGTAGCAAGGCCAAGTTCGCCGGCAGAAGCTTCA




GAA





46
97.99427
ATCTGACCTGTTACTCAAGTCGTAATATTAAAATGGCCTAAGAAAAAAACATCAGTTTCC




TAAAGTTACACATAGGAATGGTTCACAAAACCCTGCAGCTATGTCCTGATGCTGGATGAG




ACCTGTCTTGTGTAGTCCTAAATTGGTTAACGTAATATCGGAGGCACCACTGCCAATGTC




ATATATGCTGCAGCTACTCCTTAAACCAGATGTGTATTTACTGTGTTTTGTAACTTCTGA




TTCCTTCATCCCAACATCCAACATGCCTAGGCCATCTTTTCTTCTTCAGTCACATCCTGG




GATCCAATGTATAAATTCAATATTGCATGTATTGTGCATAACTCTTCTA





47
98.49624
AGTATGCCAGATCGGAACCTTTTTCCCATTTACAGTTCATGTTAATCCAATTTTTTTTAT




TATCTCACTGGCCAGTTATTCCTTTAAAAATGAACTTCCTTCTTTTTGATTCCAAGCTTA




TGATTTTACTGCTCATTAATGTGTTACAAATATGCACTTAATGATTTCACAGGGAGATAA




AATAGTGAAGAGAGATGGGCTGAGGGGCTGTTAGGACTTTAATGAAACAGATCTTTCCCG




AATATTTCTCCCTTCACATTTCTCACATTAGATGTTTCCCACATTGTTCTACTCCACACT




ATAAATAATTTTAAGGCCAATCTTAAAAAATGGTAGTTAAGTGAAGGGGTTGTGTTTATT




TCACTAGAAATCTGATAAAACGAGAGATGACATAGAAAAAGTTATCATTTTTGTTCATAC




AGATGGCTTCTAAAAATAAATCTTCAAAACTGATTACTTTTAACCTCCACCTCCCAAAAT




GAAACATCCCTACATTTGAACTGCTAGGTGAGAACTCTGAAAGCCCTCATCC





48
100
GGGTACATCCTATGGCTGCTATTTCGTCCCCGCGTTTTCAGGGTTATATGCACCTTACTG




GGAGCCCAGTGCAAGAGGGATCATCTGTGGGCTCACTCAATTCACCAATAAATGCCATAT




TGCTTTTGCTGCATTAGAAGCTGTTTGTTTCCAAACCCGGGAGATTTTGGATGCCATGAA




CCGAGACTGCGGAATTCCACTCAGTCATTTGCAGGTAGATGGAGGAATGACCAACAACAA




AATTCTTATGCAACTACAAGCAGACATTCTATATATCCCAGTAGTGAAGCCCTCGATGCC




AGAAACAACTGCCCTGGGAGCTGCCATGGCAGCCGGGGCTGCGGAGGGAGTTGGTGTTTG




GAGTCTTGAACCCGAGGATCTGTCAGCAGTCACGATGGAGCGATTTGAACCCCAGATCAA




TGCTGAGGAAAGTGAAATTCGTTACTCTACATGGAAGAAGGCTGTGATGAAGTCAGTGGG




CTGGGTTACAACTCA





49
86.53846
GAAGATCTGGCCATGTTTCGGTCCATCCCCACTGCTACGATCTTTTACCCAAGTGACGGG




GTGTCAACAGAGAAGGCGGTGGAATTAGCAGCCAATACAAAGGGCATCTGCTTCATCCGG




ACCAGCCGCCCAGAAAACGCCATCATCTATAACAACAATGAGGAGGTCCTGAAGAGCAAG




GATGACCAGGTGACTGTGATTGGGGCCGGAGTGACCCTACATGAGGCCTTGGCTGCTGCT




GAACTGCTGAAGAAAGAGAAGATCAACATTCGTGTGTTGGACCCCTTCACCATCAAGCCC




CTGGACAGAAATCTCATTCTCGAAAGCGCCCGTGCGACCAAGGGCAGGATCGTCACCGTG




GAGGACCATTACTATGAAGGTGGCATAGGTGAGGCAGTGTCCTCTGCCTTGGTGGGTGAG




CCTGGCATCACCGTCTCCCGCCTTGCAGTTGGTGAGGTACCAAGAAGCGGGAAGCCAGCT




GAGCTGCTGAAGATGTTTGGCATTGACAGGGACGCCATCGCACAAGCTGTGAGGGACCTT




GTCGCCAA





50
57.79468
CCCCAAGGAGATGAGGAGCGATGACCCCAGCAACAGGAANAACAGCCCACTGAAGGGCTG




GTGTGTGTGTNCTTCACGTGCCAGAAGAGAAGTTTAGATCCTCCCAGGGGAATCGCAATG




TTGTGGCGTCCTGACTTGTATGTCACGTTTTGTGTAAAAATGGTATATTCTTTAAAATAG




TGTTGATAACTGGAATATTGTATGTATGCTTGGAGATGCTTTGTGTGAACCTAAGACTGT




CACTCAACAGATGTTGGATTGGG





51
100
AGCCTTTCTACTGACCCTGCAAGAGTGGAGCGTGTTCACCTTGAACCCCCAGCGTGCAGC




TGAGGTAGACATGCCTCTCCAGGAGCCTTTGCCTTAATGCATCTGTGCCAGACAGACGGC




TGG





52
100
GGCAGTTTGAAAATAAAGTTCCAGAGAAACAAAAGCTATTTCAGGAGGATAATGGAATTC




CAGTGCATCTAAAGGGTGGAGTAGCTGATGCCCTCCTGTATAGAGCCACTATGATGCTTA




CAGTTGGTGGAACAGCATATGCCATGTATCAGCTAGCTGTGGCTTCTTTTCCCAAGAAGC




A





53
99.75961
GGTCCGCAGTCGTTCTGTGCGGTCATGTCTGTGCTGGTGCCGCAGCTGCTGAGGGGCCTA




ACAGGCCTCACCCGGCGGCTCCCGGTGCATCGTGCCCAGATCCATTCCAAGCCGCCGCGG




GAGCAGCTCGGGACCATGGATGTTGCCGTTGGGCTCACCTNCTGCTTCCTGTGTTTCCTC




CTGCCATCGGGCTGGGTCCTGTCACACCTGGAGAGCTACAAGAAGCGGGAGTGAAGGGGG




CTGTCCTGTCCCTCACCCTGTGACCTGACCACCCCTGGCCTGTCCTGATCATGTCTGCTG




CATTCCTGGCCGGCCTTCCATGGATCATGTCCTTCAATTACAGTGACCTCTTCTACAGTC




ATGACCTCTTGATTTCTCCATGGTGACATCCTGGGACCAAACATATTGGTTTATAA





54
27.18053
CTTATGCATTCCTTCCAAAATTGGATCATTTAGGTCAAATTATTTGATGTTAAATCATAA




GTTTTCATTTGCTTACATTTACGATATCAGCGTCAGCTACGGAATCAATCTGCTGAAGGA




CCGTGGCTGGCGGCGTGTACGATCCAGCAACCAGCGCCTGGGACCCGACTTCATCCAGGA




ACCCCTCAGAAGACTCCACTGACATTAGGAAGACTCATAAGAACCTTACAAGAAAAAGTA




TCAACCCCATCAAAACGGCAGAAAAGAAACATATCTTGTTATTAGTAGCTGAAATTCCAT




TTTCTACATGTTGCCATACCTTATAAAAACTACACTAAGCTACGCTTAAGGAAATACATT




TTCTTAAATAAATTAGAATTGAAACCAATTTTTAAGTAAATCTAGGGNTTCAATTTATTC




TCATTGNGTNTTGTTTCTGGTGCAATCATGAANAACAGCATNCTATTAACCAACCTTGGT




CCCATGTACATAA





55
98.57651
AATTGGGACTGTGTTTGGGAGCCTCATCATTGGTTATNCCAGGAATCCCTCTCTGAAGCA




ACAGCTCTTCTCCTACGCCATTCTGGGCTTTGCCCTCNCGGAGGCCATGGGGCTTTTTTG




CCTGATNGTGGCCTTTCTCATCCTCTTNGCCATGTGAAGGAGTCGTCTCCACCTCCCATA




GGTCTTTCTCCCATGTCTTGTCTGCCCTGTATGCCCTGTATGTTCCTTTTCCTATACCTC




CCCAGGCAGCCTGGGGAAAGTGGTTGGCTCAGGGTTTGACA





56
98.20789
GGTGACTTTGGACGTCCGTTCCTGCTCTGTGGAGGCNNTGCTTCGTTCCGGGCCTTGCGG




CAACTCGGTNTTTCCTTCCCCTGCGCGGGAGACCTCTGCCACAACCATGTTACGCCAGAT




CATCGGTCAGGCCAAGAAGCATCCGAGCTTGATCCCCCTCTTCATATTTATTGGGGCAGG




AGGTACTGGAGCAGCGCTGTATGTATTGCGCTTGGCATTGTTCAATCCAGATGTTAGTTG




GGATAGGAAGAATAACCCAGAACCTTGGAACAAACTGGGTCCCAATGATCAATACAAGTT




CTACTCAGTGAATGTAGATTACAGCAAACTGAAGAAAGAAGGTCCAGACTTCTAAATGAA




ATGTTTCACTATAAAGCTGCTTAGAATGAAGGTCTTCCAGAAGCCATCCGCACAATTTTC




CACTTATCCAGGAAATATTTCCCCTCTAAATGCACGAAATCATGTTGGTGTATTGTGTTG




GGGTTTACACTNNANNANTAAATATCTGAAACTTGANANGTGTCACTATTTAATGCTGAA




AATTTGCTCTGAACTTTA





57
23.95833
TTGGAAGGATGGATGCTTGCCCCAGGTCATGGACACCTCCACAAATCATCTAGTTTCCCA




GTATTTTTATAAATGGAGATTGGGCTCCATGACACTTTACTTGGTCTTCCTTCTTACATA




GGTTTTTTGATTACCCTTTCTCTCCTTGGTGCTTATATACTTAAGACCCTTTAGCCAAAC




CCTTGCCAATGACAGTATTTCAGTCACTAGTTCTCACTGTTTCCTCTGATCATTGAGCCT




TTGGAAAAAAAATCTCACAGAGCTTATATGTAATGGGGCTTGGTTGAACAGATGACTTCC




TGTAACTGCACCTCTACTTTTGGCTTCTCAAAAACAGTGGGTTGGCAGTAATGCAGCGTG




GAAGTTTTCCCATTTCTCAGTGAC
















TABLE 14







Summary of Genes involved in Glucose Metabolism










Gene Expression



Gene
Compared to Control
Role





Phosphorylase

Necessary for activation of


kinase

glycogen synthase which




stores glucose as glycogen


Phosphorylase

Necessary for glycogen




conversion to glucose 1-




phosphate which feeds into




glycolysis


Glycogen

Necessary for activation of


synthase

glycogen synthase which


kinase 3

stores glucose as glycogen


Calmodulin

Necessary for activation of




glycogen synthase which




stores glucose as glycogen


Protein Kinase

Necessary for activation of


C

glycogen synthase which




stores glucose as glycogen


Protein Kinase

Necessary for activation of


C Binding

glycogen synthase which


Protein

stores glucose as glycogen


Hexokinase 3

Necessary for glucose




conversion to pyruvate to




enter the TCA cycle


Fructose 1,6

Necessary for glucose


bisphosphatase

conversion to pyruvate to




enter the TCA cycle


Glyceraldehyde

Necessary for glucose


3-phosphate

conversion to pyruvate to


dehydrogenase

enter the TCA cycle


Glucose

Involved in pentose


6-phosphate

phosphate pathway


dehydrogenase


Enolase

Necessary for glucose




conversion to pyruvate to




enter the TCA cycle


Lactate

Involved in converting


dehydrogenase

private to lactate


Citrate lyase

Necessary for citrate




conversion to oxaloacetate




which feeds acetyl-CoA




into the fatty acid synthesis




pathway


Glycerol kinase

Necessary for changing




glycerol into DHAP which




feeds into glycolysis


Transketolase

Involved in pentose




phosphate pathway


Ribulose phosphate

Involved in pentose


3-epimerase

phosphate pathway


Ribose 5-phosphate

Involved in pentose


isomerase

phosphate pathway


Cytochrome

Associated with the


c oxidase

production of ATP (energy


polypeptide

source) in the electron


VIIa-liver/heart,

transport chain which is


mitochondrial

associated with the TCA


precursor

cycle


Cytochrome c

Associated with the


oxidase subunit

production of ATP (energy


VIII liver form

source) in the electron




transport chain which is




associated with the TCA




cycle


Ubiquinol--

Associated with the


cytochrome

production of ATP (energy


c reductase

source) in the electron




transport chain which is




associated with the TCA




cycle


ATP synthase

Associated with the




production of ATP (energy




source) in the electron




transport chain which is




associated with the TCA




cycle


NADH-ubiquinone

Associated with the


oxidoreductase

production of ATP (energy




source) in the electron




transport chain which is




associated with the TCA




cycle


Facilitated glucose

Involved in glucose uptake


transporter/Glucose


transporter-like


protein-III (GLUT3)








Claims
  • 1. A method to measure enhancement in the quality of life of an animal fed a super senior pet food composition comprising quantitating the gene expression levels of one or more genes selected from a group consisting of those disclosed in Tables 5-14 in said animal and comparing said levels in the animal to levels in the animal prior to administration of said super senior pet food composition, wherein enhanced quality of life is further evidenced by improvement in one or more characteristics selected from the group consisting of alertness, vitality, cartilage protection, muscle mass maintenance, digestibility, and skin and pelage quality, and wherein the super senior pet food composition comprises at least about 9% by weight protein, at least about 5% by weight fat, and at least about 0.05% by weight of at least one omega-3 polyunsaturated fatty acid.
  • 2. The method of claim 1 wherein said super senior pet food composition comprises the components disclosed in Table 1 or Table 1A.
  • 3. A method to enhance the quality of life of an animal by modulating the expression level of one or more genes listed on Tables 5-14 in said animal in order to mimic the pattern of expression seen in vivo after administration of a super senior pet food composition, wherein enhanced quality of life is evidenced by improvement in one or more characteristics selected from the group consisting of alertness, vitality, cartilage protection, muscle mass maintenance, digestibility, and skin and pelage quality, and wherein the super senior pet food composition comprises at least about 9% by weight protein, at least about 5% by weight fat, and at least about 0.05% by weight of at least one omega-3 polyunsaturated fatty acid.
  • 4. The method of claim 3 wherein said super senior pet food composition comprises the components disclosed in Table 1 or Table 1A.
  • 5. A method to identify an animal that might benefit from feeding a super senior pet food composition comprising measuring the gene expression levels of any one or more genes listed in Tables 5-14 in said animal and comparing said levels to the gene expression levels seen in Tables 5-14 wherein an animal with levels different than those seen in Tables 5-14 would be identified as potentially benefiting from feeding said composition, wherein the super senior pet food composition comprises at least about 9% by weight protein, at least about 5% by weight fat, and at least about 0.05% by weight of at least one omega-3 polyunsaturated fatty acid.
  • 6. The method of claim 5 wherein said super senior pet food composition comprises the components disclosed in Table 1 or Table 1A.
CROSS-REFERENCE TO RELATED APPLICATIONS

This application is a divisional application of application Ser. No. 12/176,331, filed on Jul. 18, 2008, now U.S. Pat. No. 8,252,742, issued Aug. 28, 2012, which is a continuation-in-part of pending U.S. patent application Ser. No. 11/813,276, filed Mar. 28, 2008, now U.S. Pat. No. 8,148,325, issued Apr. 3, 2012, which is a US national stage entry under 35 U.S.C. § 371 of International Application No. PCT US 2005/047461 filed Dec. 30, 2005, publication No. WO 2006/074089, which claims priority to U.S. Provisional Application Ser. No. 60/640,890, filed Dec. 30, 2004, each of which is incorporated by reference in its entirety for all purposes.

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Related Publications (1)
Number Date Country
20120289430 A1 Nov 2012 US
Provisional Applications (1)
Number Date Country
60640890 Dec 2004 US
Divisions (1)
Number Date Country
Parent 12176331 Jul 2008 US
Child 13556925 US
Continuation in Parts (1)
Number Date Country
Parent 11813276 US
Child 12176331 US