Patent Grant
7666979
The invention relates to the use of multivalent constructs for therapeutic and diagnostic applications, and methods of preparing such constructs.
Increasingly, the role of polyvalent or multipoint interactions between biomolecular targets and their natural peptide/protein ligands is being recognized as essential to the activity of the ligands at the cellular level. See, e.g., Mammen, M. et al., “Polyvalent interactions in biological systems: Implications for design and use of multivalent ligands and inhibitors,” Angew. Chem. Int. Edn. Engl. 37, 2754-2794 (1998); Gestwicki, J. E. et al., “Influencing Receptor-Ligand Binding Mechanisms with Multivalent Ligand Architecture,” J. Am. Chem. Soc. 124, 14922-933 (2002).
As a result, research into the development of synthetic multimeric or linked peptide constructs that can exploit the avidity and specificity of multivalent interactions for inhibiting or stimulating biomolecular processes in vivo or in vitro has made much progress. Such constructs can be used as novel antibiotics (see Tam, J. P. et al., “Antimicrobial Dendrimeric Peptides,” European Journal of Biochemistry 269, 923-932 (2002)); targeting entities for cancer radiodiagnostics (see Liu, S. et al., “99mTc-Labeling of Hydrazinonicotiniamide-Conjugated Vitronection Receptor Antagonist Useful for Imaging Tumors,” Bioconjugate Chem. 12, 624-629 (2001)); cancer radiotherapeutics (see Hillairet de Boisferon, M. et al., “Enhanced Targeting Specificity to Tumor Cells by Simultaneous Recognition of Two Antigens,” Bioconjugate Chem. 11, 452-460 (2000)); therapeutics (see Schaffer, L. et al., “Assembly of High Affinity Insulin Receptor Agonists and Antagonists from Peptide Building Blocks,” Proc. Natl. Acad. Sci. 100, 4435-39 (2003)); immunogens (see Jackson, D. C. et al., “Preparation and properties of totally synthetic immunogens,” Vaccine 18, 355-361 (1999); Ben-Yedidia, T. et al., “Design of peptide and polypeptide vaccines,” Current Opinion in Biotechnology 8, 442-448 (1997); O'Brien-Simpson, N. et al., “Polymerization of Unprotected Synthetic Peptides: A View toward Synthetic Peptide Vaccines,” Journal of the American Chemical Society 119, 1183-1188 (1997)); biosensors (see Baltzer, L. et al., “Modified helix-loop-helix polypeptide dimers as scaffolds for use in biosensors and array technology,” PCT Int. Appl. WO 2003080653 Al 20031002 (2003); Chao, H. et al., “Biosensor device and method involving coiled-coil heterodimer formation and detection,” PCT Int. Appl. WO 2003018797 A2 20030306 (2003); Sal-Man, N. et al., “Preassembly of membrane-active peptides is an important factor in their selectivity toward target cells,” Biochemistry 41, 11921-11930 (2002); Madou, M. et al, “Multimeric biopolymers as structural elements, sensors and actuators in Microsystems,” PCT Int. Appl. WO 2002006789 A2 20020124(2002); Benters, R. et al., “Biosensors or other devices manufactured with an activated surface containing dendrimers for immobilizing biological macromolecules,” PCT Int. Appl. WO 2001070681 Al 20010927 (2001)); and artificial proteins (see Chen, H. et al., “Interaction of dendrimers (artificial proteins) with biological hydroxyapatite crystals,” Journal of Dental Research 82, 443-448 (2003); Lucke, A. J. et al., “Designing supramolecular structures from models of cyclic peptide scaffolds with heterocyclic constraints,” Journal of Molecular Graphics & Modelling 21(5), 341-355 (2003); Mutter, Manfred et al., “Evolution versus design: template-directed self-assembly of peptides to artificial proteins (TASP),” Chimia 54, 552-557 (2000); Futaki, Shiroh, “Creation of ion channel function using synthetic peptides,” Yuki Gosei Kagaku Kyokaishi 56, 125-133 (1998)).
Similarly, biosynthetic methods have been employed to prepare multivalent antibody fragments (diabodies, triabodies, tetrabodies), in monospecific, bispecific or even trispecific form for immunotherapy of cancer, genetherapy and immunodiagnostics (see Todorovska, A. et al., “Design and Application of Diabodies, Triabodies and Tetrabodies for Cancer Targeting,” J. Immunol. Methods 248, 47-66 (2001)).
The high molecular diversity and increasing synthetic accessibility of peptides and proteins has allowed dramatic advances in their application in numerous areas of biomedical and biotechnology research. See, e.g., Bajusz, Sandor, “Peptide related drug research,” Journal of Peptide Science 9(6), 321-332 (2003); Q Loffet, Albert, “Peptides as drugs: is there a market?” Peptides: The Wave of the Future, Proceedings of the Second International and the Seventeenth American Peptide Symposium (San Diego, Calif., Jun. 9-14, 2001); Rocchi, Raniero et al., “Peptide science in the years to come,” Chimica Oggi 20(7/8), 26-29 (2002); Pang, Guangchang et al., “Research progress and prospect of bioactive peptides,” Shipin Kexue 22(2), 80-84 (Beijing, 2001); Dembowsky, Klaus et al. eds., Novel Therapeutic Proteins (2001); Remmele, R. L, Jr. ed., “Rational Protein Drug Design in Pharmaceutical Development,” Curr. Pharm. Biotechnol. 3(4), (Bentham Science Publishers Ltd., Hilversum, Neth., 2002); Billinge, S. J. L. et al. eds., From Semiconductors to Proteins: Beyond the Average Structure (Kluwer Academic/Plenum Publishers, New York, 2002); Chasman, Daniel I., Protein Structure: Determination, Analysis, and Applications for Drug Discovery (Marcel Dekker, Inc., 2003); Nail, Steven L. et al. eds., “Development and Manufacture of Protein Pharmaceuticals,” Pharm. Biotechnol. 14 (Kluwer Academic/Plenum Publishers, 2002); Walsh, Gary, “A new generation of biopharmaceuticals,” LaborPraxis 26(10), 30-33 (2002); Souriau, Christelle et al., “Recombinant antibodies for cancer diagnosis and therapy,” Expert Opinion on Biological Therapy 1(5), 845-55 (2001), all of which are incorporated herein by reference in their entirety.
As such, dimeric constructs of lead peptides are increasingly used for chemical and biological studies. Multivalent constructs of peptides have been prepared using peptide synthesis onto prebuilt multimeric cores and chemical ligation methods. The former strategy is exemplified by the MAP core approach to the elicitation of antibodies. Multiple copies of a single peptide are appended onto a pre-made N-branched lysine core (N=4,8), yielding a N-branched construct bearing multiple peptides in a dendrimeric array. See Veprek, P et al., J. Pept. Sci. 5, 5 (1999); 5, 203 (1999); Tam, J., “Vaccines 90. Modern approaches to new vaccines including prevention of AIDS,” p. 21 (R. A. Lemer,et al. Eds., Cold Spring Harbor Lab., New York, 1990).
Chemical ligation techniques employ specialized chemistries that allow construction of multimers of a single peptide or provide a means to couple peptide fragments to prepare larger peptides or proteins. In many cases the linking functions are nonpeptidic, but more recently developed methods can provide products with amide linkages. See, e.g., Sadler, Kristen et al., “Peptide dendrimers: applications and synthesis,” Reviews in Molecular Biotechnology 90(3-4), 195-229 (2002) (general review); Thumshim, Georgette et al., “Multimeric cyclic RGD peptides as potential tools for tumor targeting: Solid-phase peptide synthesis and chemoselective oxime ligation,” Chemistry - A European Journal 9(12), 2717-2725 (2003) (oxime based ligation); Wilken, Jill et al., “Chemical protein synthesis,” Current Opinion in Biotechnology 9(4), 412-426 (1998) (native chemical ligation at cysteine residue); Wade, John D. et al., “Use of thiazolidine-mediated ligation for site specific biotinylation of mouse EGF for biosensor immobilisation,” Letters in Peptide Science (2002), Vol. date: 2001: 8(3-5), 211-220 (thiazolidine formation).
Researchers have long been attempting to exploit the ability of targeting moieties or ligands to bind to specific cells (via receptors or otherwise) to target compositions such as detectable labels or therapeutic agents to particular tissues of an animal (especially a human). In such situations, the ability of the targeting moiety to bind to the target (e.g., affinity, avidity, and/or specificity) significantly impacts the ability to successfully target the desired tissues.
Numerous attempts have been made to use natural (e.g., polyclonal) and monoclonal antibodies, as targeting moieties in vivo. However, use of such antibodies presents certain disadvantages, such as unacceptable levels of antigenicity—even for humanized antibodies. In addition, natural antibodies are difficult to produce in recombinant form, due to the number of chains, disulfide bonds, and glycosylation. Natural antibodies also present pharmacokinetic problems. Antibodies pose significant problems in imaging and radiotherapeutic applications because, due to their large size; accumulation in extravascular target tissue and clearance from the vascular system are both slow. This problem is especially critical when dealing with solid tumors, which present additional barriers to the ingress of large blood born compounds. Similar problems occur with antibodies used for imaging using other modalities, such as magnetic resonance imaging (MRI), ultrasound and light. If the antibody is radiolabeled with a diagnostic or therapeutic radionuclide, lower target to background ratios result in the images. In addition, an undesirable distribution of radiation exposure between the tumor and normal tissues occurs.
In attempts to solve these problems, efforts have been directed towards the construction of smaller entities with similar binding affinities using the essential features of the natural antibody binding regions. The building blocks are typically single-chain Fv fragments (scFv) which are monovalent. Combining fragments of this type so that they have the bivalent or multivalent properties of the antibodies has been problematic. In order to dock to a surface, it is an advantage that the two binding sites on the antibody are connected via a flexible hinge to the constant region. Thus, in order to imitate the binding efficacy of antibodies, not only must the binding site be recreated, but so also must the bivalency (or higher valency) and the flexibility. This flexibility is needed because the protein backbone that makes up the nonbinding region of the scFv is still bulky relative to the binding site. Once an appropriate method has been devised to join two scFv fragments together, different scFv fragments can be joined together, as well as more than the customary two scFv moieties present in natural antibodies. Certain scFv fragments, depending both on the VH/VL interface and the linker length, can.spontaneously dimerize or multimerize. These “diabodies” are smaller than the natural antibody and do not have the immunological properties of the Fc portion (which activates complement and/or binds to Fc receptors), which they lack. The two (or more) binding sites are rotated relative to each other, and thus the antigen must be correctly positioned to accommodate this presentation.
“Miniantibodies” have properties similar to those of diabodies, but rather than a short 5-20 amino acid linker they have a relatively more flexible linker that allows freer orientation of the binding sites relative to each other, similar to the case in a natural antibody. Like diabodies, miniantibodies do not have the high molecular weight, immunologically active Fc dimer fragment. They can also be made by bacterial systems. Although they have desired advantages over natural antibodies, miniantibodies still suffer from having a relatively large size, which affects their pharmacokinetics, and must be made using biological methods. The smallest miniantibody is about 120 kDa in size.
Attempts have been made, to use bispecific antibodies (e.g., antibodies that bind to two separate targets) to overcome one of the major deficiencies of antibodies, namely, that the size of the antibodies slows accumulation in the extravascular target tissue and clearance from the blood. The bispecific approach taken has been referred to as “pretargeting.” This approach uses a two-step protocol. A bispecific antibody with at least one arm that recognizes a tumor-associated antigen and at least one other arm that recognizes an epitope on a diagnostic or therapy agent is given as a first injection. After the unbound antibody has substantially cleared non-target tissues and has reached a maximum level in the tumor, the smaller, bispecific antibody-recognizable diagnostic or therapeutic agent is given. It is hoped that the latter agents distribute more rapidly throughout the body, and either bind to the bispecific antibody localized at the tumor, or are cleared via the kidneys.
An alternative to this approach attempts to use a mixed antibody avidin/biotin system in a two-step procedure. For example, a targeting antibody is conjugated with either avidin or biotin and then is injected, whereupon it localizes in the tumor of interest. Thereafter, either biotin or avidin (depending on which was coupled to the targeting antibody), bearing an imaging or radiotherapeutic radionuclide, is injected and becomes localized at the site of the primary antibody by binding to avidin or biotin respectively.
Another approach to the use of antibodies as targeting moieties for radiopharmaceuticals or other diagnostic imagining agents has attempted to use a bivalent hapten to increase the avidity for the cell bound bispecific antibody over that of the circulating antibody. This approach relies on bidentate binding occurring with the cell bound antibodies, because the surface density on the cells is sufficiently high, but not occurring with the circulating antibodies, because the concentration is too low. In effect, the system makes use of the increase in avidity caused by the closer presentation of the antibodies/antigen on the cells.
Peptides have also been used as targeting moieties. In an attempt to improve the binding bi-specific peptide constructs have been prepared with two or more peptide based targeting agents selective for different targets. For example, a hybrid peptide having ligands to two targets selected from the somatostatin-, GRP-, CCK-, Substance P-, or VIP receptor and αvβ3 integrin was reportedly made and tested for the ability to bind to tumor cells. The initial evaluation showed no improved tumor uptake for the multiple ligand systems investigated. The investigators assumed that steric impairment leads to a reduction of the receptor affinities of the dimeric structures. Others have tested an RGD-DTPA-Octreotate hybrid peptide targeted towards both the αvβ3 integrin and the somatostatin-2 receptor for the ability to increase the tumor uptake over that of a peptide selective for one or the other targets. The different binding affinities of the two targeting moieties towards their targets, blood vessels and tumor cells, respectively, resulted in the avidity for tumors being dominated by the stronger (somatostatin mediated) interaction.
A variation on these approaches uses a bispecific diabody targeted to two different epitopes on the same antigen. This approach attempts to increase the avidity of the construct for the target, because, although the binding is monovalent for each epitope, the construct as a whole is bivalent to its target, as each of the binding epitopes is located within the same target molecule. In the case of the single molecule target, scFv fragments have been found to have insufficient affinity and an increase in avidity was required.
Two rationales underlie the approaches described above. The first rationale uses two different targeting moieties to overcome some of the pharmacokinetic problems associated with the delivery of antibodies to solid tumors. The second rationale uses two different targeting moieties to increase the avidity of the construct for a given target, such as a single molecule or a whole tumor. However, all of the approaches described suffer from various drawbacks. Thus, there remains a need for diagnostic and therapeutic agents with increased affinity and/or avidity for a target of interest. There also remains a need for diagnostic and therapeutic agents that, when administered in vivo to a mammal, have acceptable pharmacokinetic properties.
Angiogenesis, the formation of new blood vessels, occurs not only during embryonic development and normal tissue growth and repair, but is also associated with the female reproductive cycle, establishment and maintenance of pregnancy, and repair of wounds and fractures. In addition to angiogenesis that occurs in the normal individual, angiogenic events are involved in a number of pathological processes, notably tumor growth and metastasis, and other conditions in which blood vessel proliferation is increased, such as diabetic retinopathy, psoriasisand arthropathies. Angiogenesis is so important in the transition of a tumor from hyperplastic to neoplastic growth, that inhibition of angiogenesis has become an active cancer therapy research field.
Tumor-induced angiogenesis is thought to depend on the production of pro-angiogenic growth factors by the tumor cells, which overcome other forces that tend to keep existing vessels quiescent and stable. The best characterized of these pro-angiogenic agents is vascular endothelial growth factor (VEGF) (Cohen et al., FASEB J., 13: 9-22 (1999)). VEGF is produced naturally by a variety of cell types in response to hypoxia and some other stimuli. Many tumors also produce large amounts of VEGF, and/or induce nearby stromal cells to make VEGF (Fukumura et al., Cell, 94: 715-725 (1998)). VEGF, also referred toas VEGF-A, is synthesized as five different splice isoforms of 121, 145, 165, 189, and 206 amino acids. VEGF121 and VEGF165 are the main forms produced, particularly in tumors (see Cohen et al. 1999, supra). VEGF121 lacks a basic domain encoded by exons 6 and 7 of the VEGF gene and does not bind to heparin or extracellular matrix, unlike VEGF165.
VEGF family members act primarily by binding to receptor tyrosine kinases. In general, receptor tyrosine kinases are glycoproteins having an extracellular domain capable of binding one or more specific growth factors, a transmembrane domain (usually an alpha helix), a juxtamembrane domain (where the receptor may be regulated by, e.g., phosphorylation), a tyrosine kinase domain (the catalytic component of the receptor), and a carboxy-terminal tail, which in many receptors is involved in recognition and binding of the substrates for the tyrosine kinase. There are three endothelial cell-specific receptor tyrosine kinases known to bind VEGF: VEGFR-1 (Flt-1), VEGFR-2 (KDR or Flk-1), and VEGFR-3 (Flt4). Flt-1 and KDR have been identified as the primary high affinity VEGF receptors. While Flt-1 has higher affinity for VEGF, KDR displays more abundant endothelial cell expression (Bikfalvi et al., J. Cell. Physiol., 149: 50-59 (1991)). Moreover, KDR is thought to dominate the angiogenic response and is therefore of greater therapeutic and diagnostic interest (see Cohen et al. 1999, supra). Expression of KDR is highly upregulated in angiogenic vessels, especially in tumors that induce a strong angiogenic response (Veikkola et al., Cancer Res., 60: 203-212 (2000)). The critical role of KDR in angiogenesis is highlighted by the complete lack of vascular development in homozygous KDR knockout mouse embryos (Folkman et al., Cancer Medicine, 5th Edition (B. C. Decker Inc.; Ontario, Canada, 2000) pp. 132-152).
KDR (kinase domain region) is made up of 1336 amino acids in its mature form. The glycosylated form of KDR migrates on an SDS-PAGE gel with an apparent molecular weight of about 205 kDa. KDR contains seven immunoglobulin-like domains in its extracellular domain, of which the first three are the most important in VEGF binding (Cohen et al. 1999, supra). VEGF itself is a homodimer capable of binding to two KDR molecules simultaneously. The result is that two KDR molecules become dimerized upon binding and autophosphorylate, becoming much morei active. The increased kinase activity in turn initiates a signaling pathway that mediates the kDR-specific biological effects of VEGF.
Thus, not only is the VEGF binding activity of KDR in vivo critical to angiogenesis, but the ability to detect KDR upregulation on endothelial cells or to detect VEGF/KDR binding complexes would be extremely beneficial in detecting or monitoring angiogenesis. Diagnostic applications, such as detecting malignant tumor growth, and therapeutic applications, such as targeting tumoricidal agents or angiogenesis inhibitors to the tumor site, would be particularly beneficial.
Hepatocyte growth factor (also known as scatter factor) is a multi-functional growth factor involved in various physiological processes such as embryogenesis, wound healing and angiogenesis. It has become apparent that HGF, through interactions with its high affinity receptor (cMet), is involved in tumor growth, invasion and metastasis. In fact, dysregulated cMet expression (for example, the overexpression of cMet in neoplastic epithelium of colorectal adenomas and in other carcinomas as compared to normal mucosa) and/or activity, as well as hyperactivity of the cMet receptor through an autocrine stimulatory loop with HGF, has been demonstrated in a variety of tumor tissues and induces oncogenic transformation of specific cell lines.
In general, HGF is produced by the stromal cells, which form part.of many epithelial tumors; however, it is believed that the production of HGF by tumor cells themselves comprises the main pathway leading to the hyperproliferation of specific tumors. HGF/cMet autocrine stimulatory loops have been detected in gliomas, osteosarcomas, and mammary, prostate, breast, lung and other carcinomas.
Interrupting the HGF interaction with the cMet receptor slows tumor progression in animal models. In addition to stimulating proliferation of certain cancer cells through activation of cMet, HGF also protects against DNA-damaging ageht-induced cytotoxicity in a variety of cell lines susceptible to hyperproliferative phenotypes (e.g., breast cancer). Therefore, preventing HGF from binding to cMet could predispose certain cancer cells to the cytotoxicity of certain drugs.
In addition to hyperproliferative disorders, cMet also has been linked to angiogenesis. For example, stimulation of cMet leads to the production of vascular endothelial growth factor (VEGF), which, in turn, stimulates angiogenesis. Additionally, stimulation of cMet also has been implicated in promoting wound healing.
In addition to identifying the cMet receptor as a therapeutic target for hyperproliferative disorders, angiogenesis and wound healing, the large discrepancy between expression levels of neoplastic and corresponding normal tissues indicates that cMet is an attractive target for imaging applications directed to hyperproliferative disorders.
The present invention is directed, in one embodiment, to novel methods for preparing multivalent constructs for therapeutic and diagnostic applications using a novel linker D comprising a derivative of a dicarboxylic acid. More specifically, in one preferred embodiment, the present invention is directed to a method for preparing a multivalent compound comprising the formula A-B-C-D-E-B′-F comprising the steps of attaching in any order any of said A, B, C, D, E, B′ or F to any of its respective adjacent component or components in the formula A, B, C, D, E, B′ and F until the compound A-B-C-D-E-B′-F is formed, wherein D is a linker comprising a derivative of a dicarboxylic acid.
In another embodiment, the present invention is directed to novel methods for preparing multivalent constructs for therapeutic and diagnostic applications using a novel linker D comprising a dicarboxylic acid derivative. A glutaric acid bis-NHS ester or a derivative therof is a preferred dicarboxylic acid derivative. The linker D holds or connects two or more peptides of the construct together. More specifically, in another preferred embodiment, the present invention is directed to a method for preparing a multivalent compound comprising the formula A-B-C-D-E-B′-F comprising the steps of attaching in any order any of said A, B, C, D, E, B′ or F to any of its respective adjacent component or components in the formula A, B, C, D, E, B′ and F until the compound A-B-C-D-E-B′-F is formed, wherein D is a linker comprising a glutaric acid bis N-hydroxysuccinimidyl ester or a derivative therof.
In another embodiment, the present invention is directed to novel methods for preparing multivalent constructs for therapeutic and diagnostic applications using a novel linker D comprising a diamine or a derivative therof. More specifically, in another preferred embodiment, the present invention is directed to a method for preparing a multivalent compound comprising the formula A-B-C-D-E-B′-F comprising the steps. of attaching in any order any of said A, B, C, D, E, B′ or F to any of its respective adjacent component or components in the formula A, B, C, D, E, B′ and F until the compound A-B-C-D-E-B′-F is formed, wherein D is a linker comprising a diamine or a derivative thereof.
The remaining components in the multivalent construct A-B-C-D-E-B′-F are defined as follows: A is a first peptide, B is a first branching group, C is an optional first spacer, E is an optional second spacer which may be the same as or different from said first spacer C, B′ is an optional second branching group which may be the same as or different from said first branching group B, and F is a second peptide which may be the same as or different from said first peptide A. As used herein, peptides A and F include any of the monomers described herein, and specifically include those in Table 1 in Section 19. In a preferred embodiment, at least one of peptide A and peptide F is a compound or compounds comprising two or more amino acids. The peptides A and F may be different peptides, optionally targeting peptides, and may target different eptiopes of the same target or may target different epitopes of the same receptor. The receptors may include KDR or cMET. One or both of the first peptide A and second peptide F may be disulfide peptides.
Branching groups B and B′ provide a point of attachment for an optional reporter-sp group to the compound. One or both of said first branching group B and said second branching group B′ may be, but are not limited to, lysine, omithine, aspartic acid or glutamic acid.
Spacers C and E attach the linker D to the other components A, B, B′ or F of the compound while keeping those other components at a distance or “space” from the linker D. The spacers C or E are optional, and may comprise one or more of the following: (a) Gly, (b) Ser-Gly-Ser; (c) Ser(S)-Gly-Ser(S) wherein the group S comprises a hydrophilic function such as a sugar moiety which may be selected from N-acetylgalactoseamine, D-(+)-allose, D-(+)-altrose, D-(+)-glucose, D-(+)-mannose, D-(−)-gulose, D-(−)-idose, D-(+)-galactose, D-(−)-talose, D-(−)-ribose, D-(−)-arabinose, D-(+)-xylose or D-(−)-lyxose and the linkage of the serine side-chain oxygen and the sugar is via the anomeric carbon; (d) 8-amino-3,5-dioxaoctanoic acid; (e) 8-(8-amino-3,5-dioxaoctanoyl)amino-3,5-dioxaoctanoic acid or 9, 17-diamino-10-oxo-3,6,12,15-tetraoxaheptadecanoic acid; (f) 4-aminobenzoic acid;(g) 4-aminomethylbenzoic acid; (h) 4′-amino-4-biphenylcarboxylic acid; (i) 4′-aminomethyl-4-biphenylcarboxylic acid; (j) 4-mercaptobutyric acid; (k) 2-mercaptoacetic acid; (l) cysteine; (m) 4-(2-pyridydithio)butyric acid; (n) 2-pyridyldithioacetic acid; (o) cysteine-2-thiopyridyldisulfide; or (p) 2-aminoethyl-2-pyridyldissulfide.
In one embodiment the linker D comprises a diamine linker, such as, e.g., a linker of the form:
In another embodiment the linker D comprises a substituted aromatic or heterocyclic diamine of the form NH2-Q-Z-Q′-NH2, where
In another embodiment, the linker D comprises a derivative of a dicarboxylic acid, which may be derived from a D or L amino acid, or a D or L amino acid derived from lysine, omithind or 2,3-diaminopropionic acid. The linker D may be selected from among the following: 4-aminomethylbenzylamine, 4-aminomethyl-4′-aminomethylbiphenyl, N-methylpyrrole-2,5-dicarboxylic acid bis 2-aminoethylamide, pyridine-2,6-dicarboxylic acid bis-2-aminoethylamide, N-methylpyrrole-2,3-dicarboxylic acid bis-2-aminoethylamide, N-methylpyrrole-2,4-dicarboxylic acid bis-2-aminoethylamide, pyridine 2,3-dicarboxylic acid bis-2-aminoethylamide, pyridine-3,5-dicarboxylic acid bis-2-aminoethylamide and pyridine 3,4-dicarboxylic acid bis-2-aminoethylamide.
In another embodiment, the linker D comprises a glutaric acid bis N-hydroxysuccinimidyl ester or a derivative thereof.
Using the methods of the present invention, said first peptide A and said second peptide F may be connected in a number of arrangements, including, e.g.,: (a) from C-terminus to C-terminus; (b) from N-terminus to C-terminus; (c) from C-terminus to N-terminus; or (d) from N-terminus to N-terminus.
In a further embodiment, the preferred method includes the step of attaching a first reporter-sp group to one of said branching groups B or B′. Additionally, where both branching groups B and B′ are present, a preferred method includes the step of attaching a second reporter-sp group to the other of said branching group B or B′ to which the first reporter-sp group was not attached.
Reporter-sp groups or molecules serve as reporters or special purpose molecules, or may serve both functions. One or both of the first reporter-sp group and second reporter-sp group may comprise a phospholipid or lipid moiety. One or both of the first reporter-sp group and second reporter-sp group may comprise, e.g., a diamagnetic or magnetic metal chelate, a metal chelator system, a radiometal chelating system, a radioisotope-labeled molecule, a dye molecule, a fluorescent molecule, a phosphorescent molecule, a molecule absorbing in the UV spectrum, a molecule capable of absorption of near or far infrared radiation; or a molecule or supramolecular construct that absorbs and/or emits x-rays, gamma rays, beta particles, alpha particles, ultrasounds, optical or magnetic signals. One or both of the first reporter-sp group and second reporter-sp group may possess the ability to act as a therapeutic, and/or the capability to act as a toxin employed for selective killing and/or inhibiting the growth of cancer cells or normal tissue. The final multivalent compound may comprise one, two or even three or more reporter-sp groups.
The present invention offers a number of advantages and distinctions from the art or other known method for preparing multivalent constructs. Not only are novel linkers employed to prepare multivalent constructs, but the use of such linkers in conjunction with appropriate orthogonal protection strategies, selective reagents, and advantageous exploitation of the differing physical properties of reagents and intermediates, further yields a novel method of preparing the multivalent contruct that can be accomplished in virtually any order. As such, a new and improved flexibility results from the methods of the present invention. In particular, the presentmethods allow ahigh degree of control over the incorporation of reporter-sp groups into one or more of the constituent monomers. This is also controllable with respect to the stage of synthesis at which the incorporation of the reporter-sp groups are conducted.
Additionally, the novel method of using peptides which target different epitopes of the same targetor or receptor imparts unexpectedly superior binding characteristics to the multivalent constructs of the present invention.
The present invention is based, in part, on the discovery that compounds having two or more binding moieties, wherein at least two of the binding moieties bind to different binding sites on the same target, have unexpected and significantly improved ability to bind the target. Preferably the target is a receptor or a receptor/ligand complex. The improved ability of compounds of the invention (variously referred to as “multivalent targeting constructs,” “heterodimers,” “heterodimeric constructs,” “heterotrimers,” “heterotetramers,” “heteromultimers” and/or “heteromultimeric constructs” herein) to bind a target may be demonstrated by comparison to the ability of an individual, constituent, binding moiety to bind the target.
For example, the binding strength of a heteromultimer of the invention may be compared to the binding strength of one of the monomers that constitute the structure of the heteromultimer. Preferably, a heteromultimer of the invention exhibits an increase in affinity (as determined, for example, by measurement of a decreased dissociation constant KD), compared to that observed for the interaction of the target with an individual, constituent monomer.
The present invention is directed to novel methods for preparing multivalent constructs for therapeutic and diagnostic applications using novel linkers (linker D).
As used herein, the term “recombinant” isused to describe non-naturally altered or manipulated nucleic acids, host cells transfected with exogenous nucleic acids, or polypeptides expressed non-naturally, through manipulation of isolated DNA and transformation of host cells. Recombinant is a term that specifically encompasses DNA molecules which have been constructed in vitro using genetic engineering techniques, and use of the term “recombinant” as an adjective to describe a molecule, construct, vector, transfected cell, polypeptide or polynucleotide specifically excludes naturally occurring such molecules, constructs, vectors, cells,. polypeptides or polynucleotides.
The term “bacteriophage” is defined as a bacterial virus containing a DNA core and a protective shell built up by the aggregation of a number of different protein molecules. The terms “bacteriophage” and “phage” are used hereininterchangeably.
The term “polypeptide” is used torefer to a compound of two or more amino acids joined through the main chain (as opposed to side chain) by a peptide amide bond (—C(:O)NH—). The term “peptide” is used interchangeably herein with “polypeptide” but is generally used to refer to polypeptides having fewer than 40, and preferably fewer than 25 amino acids.
The term “binding” refers to the determination by standard assays, including those described herein, that a binding polypeptide recognizes and binds reversibly to a given target. Such standard assays include, but are not limited to, equilibrium dialysis, gel filtration, surface plasmon resonance and the monitoring of spectroscopic changes that result from binding.
The term “binding polypeptide” as used herein refers to any polypeptide capable of forming a binding complex with another molecule. Also included within the definition of “binding polypeptides” are polypeptides that are modified or optimized as disclosed herein. Specific examples of such modifications are discussed in detail infra, but include substitution of amino acids for those in the parent polypeptide sequence to optimize properties, to remove or alter the characteristics of an enzyme cleavage site, etc.; C- or N-terminal amino acid substitutions or elongations, e.g., for the purpose of linking the binding polypeptide to a detectable imaging label or other substrate, examples of which include, e.g., addition of a polyhistidine “tail” to assist in purification; truncations; amide bond changes; translocations; retroinverso peptides; peptoids; retroinversopeptoids; the use of N-terminal or C-terminal modifications or linkers, such as polyglycine or polylysine segments; alterations to include functional groups, notably hydrazide (—NH—NH2) functionalities or the C-terminal linker -Gly-Gly-Gly-Lys, to assist in immobilization of binding peptides accordingto this invention on solid supports or for attachment of fluorescent dyes; modifications which effect pharmacokinetics; structural modifications to retain ol enforce structural features; formation of salts to increase water solubility or ease of formulation, and the like. In addition to the detectable labels described further herein, the binding polypeptides may be linked or conjugated to a radiotherapeutic agent, a cytotoxic agent, a tumorcidal agent or enzyme, a liposome (e.g., loaded with a therapeutic agent, an ultrasound appropriate gas, or both). In addition, binding polypeptides of the invention may be bound or linked to a solid support, such as a well, plate, bead, tube, slide, filter, or dish. Moreover, dimers or multimers of one or more binding polypeptides may be formed. Such constructs may, for example, exhibit increased ability to bind to the target. All such modified polypeptides are also considered “binding polypeptides” so long as they retain the ability to bind the targets.
“Homologues” of the binding polypeptides described herein may be produced using any of the modification or optimization techniques described herein or known to those skilled in the art. Such homologous polypeptides will be understood to fall within the scope of the present invention and the definition of “binding polypeptides” so long as the substitution, addition, or deletion of amino acids or other such modification does not eliminate its ability to bind to the target. The term “homologous,” as used herein, refers to the degree of sequence similarity between two polymers (i.e., polypeptide molecules or nucleic acid molecules). When the same nucleotide or amino acid residue or one with substantially similar properties (i.e. a conservative substitution) occupies a sequence position in the two polymers under comparison, then the polymers are homologous at that position. For example, if the amino acid residues at 60 of 100 amino acid positions in two polypeptide sequences match or are homologous, then the two sequences are 60% homologous. The homology percentage figures referred to herein reflect the maximal homology possible between the two polymers, i.e., the percent homology when the two polymers are so aligned as to have the greatest number of matched (homologous) positions. Polypeptide homologues within the scope of the present invention will be at least 70% and preferably greater than 80% homologous to at least one of the binding sequences disclosed herein.
“KDR-binding polypeptide” is a binding polypeptide that forms a complex in vitro or in vivo with vascular endothelial growth factor receptor-2 (or KDR, Flk-1).
“VEGF/KDR complex-binding polypeptide” is a binding polypeptide that forms a complex in vitro or in vivo with a binding complex formed between vascular endothelial growth factor (VEGF) and KDR, in particular the complex of homodimeric VEGF and one or two KDR molecules that is believed to form at the surface of endothelial cells during angiogenesis. Specific examples of KDR and VEGF/KDR-binding polypeptides include but are not limited to the peptides presented discussed herein, and in U.S. Ser. No. 60/360,851 and U.S. Ser. No. 60/440,441, both of which are incorporated by reference herein in their entirety, and in copending application U.S. Ser. No. 10/661,156, entitled “KDR and VEGF/KDR-binding peptides and their use in diagnosis and therapy,” and include hybrid and chimeric polypeptides incorporating such peptides as well as homologues.
“cMet binding polypeptide” is a binding polypeptide that forms a complex in vitro or in vivo with the HGF receptor, cMet.
“cMet/HGF complex-binding polypeptide” is a binding polypeptide that forms a complex in vitro or in vivo with a binding complex formed between hepatocyte growth factor (HGF) and cMet. Specific examples of cMet and cMet/HGF binding polypeptides include but are not limited to the peptides presented discussed herein, and in U.S.S.N. copending applications U.S. Ser. No. 60/451,588 and U.S. Ser. No. 10/792,582, entitled “Peptides that Specifically Bind HGF Receptor (cMet) and Uses Thereof,” incorporated by reference in their entirety herein, and include hybrid and chimeric polypeptides incorporating such peptides as well as homologues.
A “labeling group” or “detectable label,” as used herein, is a group or moiety capable of generating a signal for diagnostic imaging, such as, e.g., magnetic resonance imaging, radioimaging, ultrasound imaging, x-ray imaging, light imaging, or carrying a moiety such as a radioactive metal or other entity that may be used in radiotherapy or other forms of therapy.
The term “specificity” refers to a binding polypeptide having a higher binding affinity for one target over another. Binding specificity may be characterized by a dissociation equilibrium constant (KD) or an association equilibrium constant (Ka) for the two tested target materials. In a preferred embodiment, binding polypeptides of the invention have a dissociation constant for a desired target that is lower than about 10 μM, more preferably lower than about 1 μM, and most preferably less than about 0.5 μM or even lower. The term “KDR specificity” refers to a KDR-binding moiety having a higher affinity for KDR than an irrelevant target. The term “VEGF/KDR specificity” refers to a VEGF/KDR complex-binding moiety having a higher affinity for a VEGF/KDR complex than an irrelevant target. In a preferred embodiment, heteromultimers according to the present invention are specific for KDR or the VEGF/KDR complex, and preferably have a dissociation constant that is lower than about 10 μM, more preferably less than about 1 μM, most preferably less than about 0.5 μM or even lower. The term “cMet specificity” refers to a cMet binding moiety having a higher affinity for cMet than an irrelevant target. The term “cMet/HGF specificity” refers to a cMet/HGF complex-binding moiety having a higher affinity for a cMet/HGF complex than an irrelevant target. In a preferred embodiment, binding heteromultimers according to the present invention are specific for cMet or the cMet/HGF complex, and preferably have a dissociation constant that is lower than about 10 μM, more preferably less than about 1 μM, most preferably less than about 0.5 μM or even lower.
The term “patient” as used herein refers to any mammal, especially humans.
The term “pharmaceutically acceptable” carrier or excipient refers to a non-toxic carrier or excipient that may be administered to a patient, together with a compound of this invention, and which does not destroy the pharmacological activity thereof.
The term “target” or “target molecule” refers to any substance that a binding moiety or binding polypeptide can bind to, such as proteins or polypeptides, cells, receptors, carbohydrates, lipids, etc. As used herein, “target” also includes a family of receptors, such as, for example, protein-tyrosine kinase receptors.
The terms “therapeutic agent” or “therapeutic” refer to a compound or an agent having a beneficial, therapeutic or cytotoxic effect in vivo. Therapeutic agents include those compositions referred to as, for example, bioactive agents, cytotoxic agents, drugs, chemotherapy agents, radiotherapeuttic agents, genetic material, etc.
The following common abbreviations are used throughout this specification: 9-fluorenylmethyloxycarbonyl (fmoc or Fmoc), 1-hydroxybenozotriazole (HOBt), N,N′-diisopropylcarbodiimide (DIC), acetic anhydride (Ac2O), (4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)-3-methylbutyl (ivDde), trifluoroacetic acid (TFA), Reagent B (TFA:H20:phenol:triisopropylsilane, 88:5:5:2), N,N-diisopropylethylamine (DIEA), O-(1H-benzotriazole-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU), O-(7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorphosphate (HATU), N-hydroxysuccinimide (NHS), solid phase peptide synthesis (SPPS), dimethyl sulfoxide (DMSO), dichloromethane (DCM), dimethylformamide (DMF), and N-methylpyrrolidinone (NMP).
The targeting constructs of the invention include two or more binding moieties which bind to different binding sites of a single target. The binding moieties are specific for different sites on the same target. They may be peptidic, peptidomimetic, etc. and include binding polypeptides as defined herein. Additionally, binding moieties include small binding molecules. In a preferred embodiment the binding moieties comprise binding polypeptides. These targeting constructs are by definition dimeric or multimeric and may be referred to as “multivalent targeting constructs,” “heterodimers,” “heterodimeric constructs,” “heterodimeric peptides,” “heterotrimers, “heterotetramers,” “heteromultimers,” “hetermultimeric constructs” or “heteromers” for example. These dimeric or multimeric constructs exhibit improved binding, as compared to a monomeric construct. Where the constructs comprise binding polypeptides, the polypeptide sequences may be attached at their N- or C-terminus or the N-epsilon nitrogen of a suitably placed lysine moiety (or another function bearing a selectively derivatizable group such as a pendant oxyamino or other nucleophilic group), or may be joined together via one or more linkers employing the appropriate attachment chemistry. This coupling chemistry may include amide, urea, thiourea, oxime, or aminoacetylamide (from chloro or bromo acetamide derivatives), but is not so limited.
In one embodiment, preferred dimers according to the invention can be constructed by connecting a first binding peptide to a branching group to a first spacer to a linker to second spacer and finally to the second binding peptide. This linking scheme for the dimers can be represented by the following general structure:
A-B-C-D-E-F
where A and F are two different binding peptides which bind to different sites on the same target, B is a branching group, C and E are optional spacers, and D is a linker. Suitable spacers and linkers are known in the art and are also provided in the Examples below. In various embodiments, C, D and/or E may optionally be present or absent. A reporter moiety or similar group may optionally be attached to the dimer via the branch group. The exact arrangement of these components can vary depending, for example, on whether the peptides are linked from C-terminus to C-terminus, from N-terminus to C-terminus, or from N-terminus to N-terninus. Examples of these different attachment schemes are shown in
In another embodiment, the present invention is directed to a method for preparing a multivalent compound comprising the formula
A-B-C-D-E-B′-F
comprising the steps of attaching in any order any of said A, B, C, D, E, B′ or F with any of its respective adjacent component or components in th; formula A, B, C, D, E, B′ and F until the compound A-B-C-D-E-B′-F is formed, wherein D is a linker comprising a derivative of a dicarboxylic acid.
In another embodiment, the present invention is directed to a method for preparing a multivalent compound comprising the formula
A-B-C-D-E-B′-F
comprising the steps of attaching in any order any of said A, B, C, D, E, B′ or F. with any of its respective adjacent component or components in the formula A, B, C, D, E, B′ and F until the compound A-B-C-D-E-B′-F is formed, wherein D is a linker comprising a glutaric acid bis N-hydroxysuccinimidyl ester or a derivative therof.
In another embodiment, the present invention is directed to a method for preparing a multivalent compound comprising the formula
A-B-C-D-E-B′-F
comprising the steps of attaching in any order any of said A, B, C, D, E, B′ or F with any of its respective adjacent component or components in the formula A, B, C, D, E, B′ and F until the compound A-B-C-D-E-B′-F is formed, wherein D is a diamine linker or a derivative thereof.
The components of the preferred multivalent construct A-B-C-D-E-B′-F are defined as follows: A is a first peptide, B is a first branching group, C is an optional first spacer, D is a linker which comprises a derivative of dicarboxylic acid or a diamine or derivative thereof; E is an optional second spacer which may be the same as or different. from said first spacer C, B′ is an optional second branching group which may be the same as or different from said first branching group B, and F is a second peptide which may be the same as or different from said first peptide A. In a preferred embodiment, D is a glutaric acid bis N-hydroxysuccinimidyl ester.
As used herein, peptides A and F are compounds, including any of the monomers described herein, and specifically include those in Table 1 in Section 19. In a preferred embodiment, at least one of peptides A and F comprises two or more amino acids. The peptides A and F may be different peptides, optionally targeting peptides, and rhay target different eptiopes of the same target or may target different epitopes of the same receptor. The receptors may include KDR or cMET.
Branching groups B and B′ provide a point of attachment for an optional reporter-sp group to the compound. One or both of said first branching group B and said second branching group B′ may be, but are not limited to, lysine, omithine, aspartic acid or glutamic acid.
Optional spacers C and E may be used to attach the linker D to the other components A, B, B′ or F of the compound while keeping those other components at a distance or “space” from the linker D.
Each of these components are described in further detail in the Examples and teachings which follow. In various embodiments, B′, C and/or E may optionally be absent. A reporter moiety or similar group may optionally be attached to the dimer via the branching group.
The exact arrangement of these components can vary depending, for example, on whether the peptides are linked from C-terminus to C-terminus, from N-terminus to C-terminus, or from N-terminus to N-terminus. Examples of these different attachment schemes are shown in
As will be clear from the teachings which follow (e.g., Sections 15-18), the use of the new linker D (i.e., the deriviative of a dicarboxylic acid such as glutaric acid bis-NHS ester or a derivative therof; or the diamine) with the new methods of the present invention provides improved and superior preparation and product characteristics compared to those known in the art.
1. Preparation of Peptide Constructs
The preparation of dimeric constructs bearing two different binding peptides (or two molecules of a particular peptide) and a labeling group may be accomplished as described herein, as well as by other methods known in the art. For example, fully protected binding peptides can be built up on Ellman-type safety catch resin using automated or manual Fmoc peptide synthesis protocols. See Backes, B. J., et al., J. Am. Chem. Soc. 118(12), 3055-6 (1996), which is hereby incorporated by reference in its entirety. Separately, using standard methods known in the art of peptide synthesis (see, e.g., Fields, G. B. et al., “Principles and Practice of Solid Phase Synthesis” in Synthetic Peptides, A Users Guide, Grant, G. A. ed:, Chap. 3: pp. 77-183 W. H. Freeman Co. NY. 1992, which is hereby incorporated by reference in its entirety), a di-lysine derivative can be constructed on 2-chlorotrityl resin. See Barlos, K. and Gatos, D. “Convergent Peptide Synthesis” in Fmoc Solid Phase Peptide Synthesis, Chan, W. C. and White, P. D. eds., Chap 9: pp. 215-228 (Oxford University Press, New York, 2000), which is hereby incorporated by reference in its entirety. Liberation of this derivative from the 2-chlorotrityl resin without removal of the side-chain protecting groups, activation of the carboxyl group, and coupling to any amine-functionalized labeling group provides a di-lysine derivative whose protected pendant nitrogen atoms may be unmasked to give two free amino groups. The aforementioned safety-catch resin is activated and the desired N-deprotected labeling group-functionalized di-lysine derivative is added to the activated safety-catch resin. The pendant amino groups are acylated by the carboxy-terminus of the safety-catch resin-bound peptide which is now detached from the resin and an integral part of the di-lysine structure. An excess of the safety-catch resin-bound peptide can be employed to insure complete reaction of the amino groups of the di-lysine construct. Optimization of the ratio of the reacting partners in this scheme optimizes the yield. The protecting groups on the binding peptides are removed employing trifluoroacetic acid based cleavage protocols.
For example, the synthesis of dimeric and multimeric constructs wherein two or more binding peptides are present in one construct is easily accomplished. Orthogonal protection schemes (such as an allyloxycarbonyl group on one nitrogen and an Fmoc group on the other, or employing the Fmoc group in conjunction with the iV-Dde protecting group on the other, for example) can be employed to distinguish the pendant nitrogen atoms of the di-lysine derivatives described above. Unmasking of one of the amino groups, followed by reaction of the resulting product with an activated safety-catch resin-bound binding peptide as described above, provides a di-lysine construct having a single binding peptide attached. Removal of the second protecting group unmasks the remaining nitrogen. See, e.g., Mellor, S. L. et al., “Synthesis of Modified Peptides” in Fmoc Solid Phase Peptide Synthesis, Chan, W. C. and White, P. D. eds., Chap 6: pp. 169-176 (Oxford University Press, New York, 2000), which is hereby incorporated by reference in its entirety. The resulting product may be reacted with a second safety-catch resin bearing a different binding peptide to provide a fully-protected heterodimeric construct, which after removal of protecting groups with trifluoroacetic acid, provides the desired material.
Alternatively, a binding peptide is first assembled on a Rink-amide resin by automated or manual peptide coupling methods, usually employing Fmocpeptide synthesis protocols. The peptide may possess a C-terminus of N-terminus functionalized with a linker or a linker-labeling group construct that may possess an additional nucleophilic group such as the Nε-amino group of a lysine moiety, for example. Cleavage of the protecting groups is accomplished by employing trifluoroacetic acid with appropriate modifiers, depending on the nature of the peptide. The fully deprotected peptide is then reacted with a large excess of a bifunctional electrophile such as glutaric acid bis-N-hydroxysuccinimide ester (commercially available from Tyger Scientific Inc., 324 Stokes Avenie, Ewing, N.J., 08638). The resulting monoamidated, mono-N-hydroxysuccinimidyl ester of glutaric acid is then treated with an additional equivalent of the same peptide, or an equivalent of a different binding peptide. Purification of the resulting material by HPLC affords the desired homo- or hetero-dimeric construct beahring a suitable labeling group.
In yet another approach, a modular scheme can be employed to prepare dimeric or higher multimeric constructs bearing suitable labeling groups as defined above. In a simple illustration, fmoc-lysine(iVDde) Rink amide resin is treated with piperidine to remove the fmoc moiety. Then a labeling function, such as biotin, 5-carboxyfluorescein or N,N-Dimethyl-Gly-Ser(O-t-Bu)Cys(Acm)Gly-OH is coupled to the nitrogen atom. The resin is next treated with hydrazine to remove the iVDde group. After thorough washing, the resin is treated with cyanuric chloride and a hindered base such as diisopropylethylamine in a suitable solvent such as DMF, NMP or dichloromethane to provide a monofunctionalized dichlorotriazine bound to the resin. Subsequent successive displacement of the remaining chlorine atoms either by two equivalents of a binding peptide or one equivalent of a binding peptide, followed by a second binding peptide, provides a resin-bound, hetero- or homo-dimeric, labeling group-functionalized construct. See, e.g., Falorni, M., et al., Tetrahedron Lett. (1998), 39(41), 7607-7610; Johnson, C. R., et al., Tetrahedron (1998), 54(16), 4097-4106; Stankova, M. and Lebl, M., Mol. Diversity (1996), 2(1/2), 75-80.
As appropriate, the incoming peptides may be protected or unprotected as the situation warrants. Cleavage of protecting groups is accomplished employing trifluoroacetic acid-based deprotection reagents as described above, and the desired materials are purified by high performance liquid chromatography.
It is understood that in each of these methods, lysine derivatives, omithine, or 2,3-diamino propionic acid may be serially employed to increase the multiplicity of the multimers. The use of related, more rigid molecules bearing the requisite number of masked, or orthogonally protected nitrogen atoms to act as scaffolds, to vary the distance between the binding peptides, and to increase the rigidity of the construct (by constraining the motion and relative positions of the binding peptides relative to each other and the reporter) is entirely within the scope of the synthetic methods described herein.
Direct synthesis of the binding polypeptides may be accomplished using conventional techniques, including solid-phase peptide synthesis, solution-phase synthesis, etc. Solid-phase synthesis is preferred. See Stewart et al., Solid-Phase Peptide Synthesis (1989), W. H. Freeman Co., San Francisco; Merrifield, J. Am. Chem. Soc., 85:2149-2154 (1963); Bodanszky and Bodanszky, The Practice ofpeptide Synthesis (Springer-Verlag, New York 1984), incorporated herein by reference. Polypeptides of the invention may also be prepared commercially by companies providing peptide synthesis as a service (e.g., BACHEM Bioscience, Inc., King of Prussia, Pa.; Quality Controlled Biochemicals, Inc., Hopkinton, Mass.). Automated peptide synthesis machines, such as manufactured by Perkin-Elmer Applied Biosystems, also are available.
The polypeptide compound is preferably purified once it has been isolated or synthesized by either chemical or recombinant techniques. For purification purposes, there are many standard methods that may be employed, including reverse-phase high-pressure liquid chromatography (RP-HPLC) using an alkylated silica column such as C4-, C8 or C18-silica. A gradient mobile phase of increasing organic content is generally used to achieve purification, for example, acetonitrile in an aqueous buffer, usually containing a small amount of trifluoroacetic acid. Ion-exchange chromatography can also be used to separate peptides based on their charge. The degree of purity of the polypeptide may be determined by various methods, including identification of a major large peak on HPLC. A polypeptide that produces a single peak that is at least 95% of the input material on an HPLC column is preferred. Even more preferable is a polypeptide that produces a single peak that is at least 97%, at least 98%, at least 99% or even 99.5% or more of the input material on an HPLC column.
To ensure that the peptide obtained using any of the techniques described above is the desired peptide for use in compositions of the present invention, analysis of the peptide composition may be carried out. Such composition analysis may be conducted using high resolution mass spectrometry to determine the molecular weight of the peptide. Alternatively, the amino acid content of the peptide can be confirmed by hydrolysis of the peptide in aqueous acid, separating, identifying and quantifying the components of the mixture using HPLC, or an amino acid analyzer. Protein sequencers, which sequentially degrade the peptide and identify the amino acids in order, may also be used to determine the sequence of the peptide.
For example, binding polypeptides also may be produced using recombinant DNA techniques, utilizing nucleic acids (polynucleotides) encoding the polypeptides of the invention, and then expressing them recombinantly, i.e., by manipulating host cells by introduction of exogenous nucleic acid molecules in known ways to cause such host cells to produce the desired binding polypeptides. Such procedures are within the capability of those skilled in the art (see Davis et al., Basic Methods in Mllecular Biology, (1986), which is hereby incorporated by reference in its entirety). Recombinant production of short peptides such as those described herein may not be practical in comparison to direct synthesis; however, recombinant means of production may be very advantageous where a binding moiety of this invention is incorporated in a hybrid polypeptide or fusion protein.
In the practice of one embodiment of the present invention, a determination of the affinity of the heteromultimer or a constituent binding moiety for the target relative to another protein or target is a useful measure, and is referred to as affinity for the target. Standard assays for quantitating binding and determining affinity include, e.g., equilibrium dialysis, equilibrium binding, gel filtration, surface plasmon resonance or the monitoring of numerous spectroscopic changes (such as a change in fluorescence polarization) that may result from the interaction of the binding moiety and its target. These techniques or modifications thereof measure the concentration of bound and free ligand as a function of ligand (or protein) concentration. The concentration of bound heteromultimer or polypeptide ([Bound]) is related to the concentration of free heteromultimer or polypeptide ([Free]) and the concentration of binding sites for the polypeptide, i.e., on KDR, VEGF/KDR complex, cMet, or the cMet/HGF complex (N), as described in the following equation:
[Bound]=N×[Free]/((1/Ka)+[Free]).
A solution of the data to this equation yields the association constant, Ka, a quantitative measure of the binding affinity. The association constant, Ka is the reciprocal of the dissociation constant, KD. The KD is more frequently reported in measurements of affinity. In a preferred embodiment heteromultimers of the invention and constituent binding polypeptides bind to the target, e.g., KDR, VEGF/KDR complex, cMet or cMet/HGF and have a KD for the target in the range of 1 nanomolar (nM) to 100 micromolar (μM) and preferably have KD values less than 50 μM, more preferably less than 1 μM, even more preferably less than 50 nM, and most preferably less than 10 nM.
Where heteromultimers are employed as imaging agents, other aspects of binding affinity may become more important. For example, such imaging agents operate in a dynamic system, in that binding of the imaging agent to the target (such as KDR or VEGF/KDR complex, e.g., on activated endothelium) is not in a stable equilibrium state throughout the imaging procedure. For example, when the imaging agent is initially injected, the concentration of imaging agent and of agent-target complex rapidly increases. Shortly after injection, however, the circulating (free) imaging agent starts to clear through the kidneys or liver, and the plasma concentration of imaging agent begins to drop. This drop in the concentration of free imaging agent in the plasma eventually causes the agent-target complex to dissociate. The usefulness of an imaging agent depends on the difference in rate of agent-target dissociation relative to the clearing rate of the agent. Ideally, the dissociation rate will be slow compared to the clearing rate, resulting in a long imaging time, during which there is a high concentration of agent-target complex and a low concentration of free imaging agent (background signal) in the plasma.
An advantage of heteromultimeric binding compounds, such as those of the present invention, is that they generally possess very slow dissociation rates relative to their constituent monomers (see Tissot et al., J. Immunol. Methods 236(1-2):147-165 (2000)). In addition, heteromultimeric compounds capable of binding to two distinct epitopes on a target molecule simultaneously can achieve multimeric binding regardless of the distance between target molecules on the cell surface. Homomultimeric binding compounds, on the other hand, depend on the presence of two or more target molecules being in close enough proximity such that the homomultimer can span the distance between them. Thus, the heteromultimeric binding compounds of the present invention are particularly well suited for binding to receptors and other cell surface molecules that are less abundant and therefore more distant from each other on the cell surface.
Quantitative measurement of dissociation rates may be easily performed using several methods known in the art, such as fiber optic fluorimetry (see, e.g., Anderson and Miller, Clin. Chem., 34(7):1417-21 (1988)), surface plasmon resonance (see Malmborg et al., J. Immunol. Methods, 198(1):51-7 (1996) and Schuck, Current Opinion in Biotechnology, 8:498-502 (1997)), resonant mirror, and grating coupled planar waveguiding (see, e.g., Hutchinson, Molec. Biotechnology, 3:47-54 (1995)). Automated biosensors are commercially available for measuring binding kinetics: BlAcore surface plasmon resonance sensor (Biacore AB, Uppsala SE), IAsys resonant mirror sensor (Fisons Applied Sensor Technology, Cambridge GB), BIOS-1 grated coupled planar waveguiding sensor (Artificial Sensor Instruments, Zurich CH).
2. Modification or Optimization of Binding Polypeptides
Modification or optimization of heteromultimers is within the scope of the present invention. In particular, modified or optimized heteromultimers are included within the definition of “heteromultimers.” Similarly, modified or optimized binding polypeptides are included within the definition of “binding polypeptides” and the phrase “KDR and VEGF/KDR complex-binding polypeptides” includes modified or optimized KDR and VEGF/KDR-binding polypeptides, and the phrase “cMet and cMet/HGF complex-binding polypeptides” includes modified or optimized cMet and cMet/HGF binding polypeptides. Specifically, a polypeptide sequence for use in the heteromultimers of the invention can be modified to optimize its potency, pharmacokinetic behavior, stability and/or other biological, physical and chemical properties.
3. Substitution of Amino Acid Residues
Substitutions of amino acids within the same class (e.g., substituting one basic amino acid for another) arewell known in the art. For example, one can make the following isosteric and/or conservative amino acid changes in the parent polypeptide sequence with the expectation that the resulting polypeptides would have a similar or improved profile of the properties described above:
Substitution of alkyl-substituted hydrophobic amino acids: Including alanine, leucine, isoleucine, valine, norleucine, S-2-aminobutyric acid, S-cyclohexylalanine or other simple alpha-amino acids substituted by an aliphatic side chain from 1-10 carbons including branched, cyclic and straight chain alkyl, alkenyl or alkynyl substitutions.
Substitution of aromatic-substituted hydrophobic amino acids: Including phenylalanine, tryptophan, tyrosine, biphenylalanine, 1-naphthylalanine, 2-naphthylalanine, 2-benzothienylalanine, 3-benzothienylalanine, histidine, amino, alkylamino, dialkylamino, aza, halogenated (fluoro, chloro, bromo, or iodo) or alkoxy (from C1-C4)-substituted forms of the previous listed aromatic amino acids, illustrative examples of which are: 2-, 3-, or 4-aminophenylalanine, 2-, 3-, or 4-chlorophenylalanine, 2-, 3-, or 4-methylphenylalanine, 2-, 3-, or 4-methoxyphenylalanine, 5-amino-, 5-chloro-, 5-methyl- or 5-methoxytryptophan, 2′-, 3′-, or 4′-amino-, 2′-, 3′-, or 4′-chloro-, 2,3, or 4-biphenylalanine, 2′-, 3′-, or 4′-methyl-2-, 3- or 4-biphenylalanine, and 2- or 3-pyridylalanine.
Substitution of amino acids containing basic functions: Including arginine, lysine, histidipe, omithine, 2,3-diaminopropionic acid, homoarginine, alkyl, alkenyl, or aryl-substituted (from C1-C10 branched, linear, or cyclic) derivatives of the previous amino acids, whether the substituent is on the heteroatoms (such as the alpha nitrogen, or the distal nitrogen or nitrogens, or on the alpha carbon, in the pro-R position for example. Compounds that serve as illustrative examples include: N-epsilon-isopropyl-lysine, 3-(4-tetrahydropyridyl)-glycine, 3-(4-tetrahydropyridyl)-alanine, N,N-gamma, gamma′-diethyl-homoarginine. Included also are compounds such as alpha methyl arginine, alpha methyl 2,3-diaminopropionic acid, alpha methyl histidine, alpha methyl omithine where the alkyl group occupies the pro-R position of the alpha carbon. Also included are the amides formed from alkyl, aromatic, heteroaromatic (where the heteroaromatic group has one or more nitrogens, oxygens or sulfur atoms singly or in combination) carboxylic acids or any of the many well-known activated derivatives such as acid chlorides, active esters, active azolides and related derivatives) and lysine, omithine, or 2,3-diaminopropionic acid.
Substitution of acidic amino acids: Including,aspartic acid, glutamic acid, homoglutamic acid, tyrosine, alkyl, aryl, aralkyl, and heteroaryl sulfonamides of 2,3-diaminopropionic acid, omithine or lysine and tetrazole-substituted alkyl amino acids.
Substitution of side chain amide residues: Including asparagine, glutamine, and alkyl or aromatic substituted derivatives of asparagine or glutamine.
Substitution of hydroxyl containing amino acids: Including serine, threonine, homoserine, 2,3-diaminopropionic acid, and alkyl or aromatic substituted derivatives of serine or threonine.
It is also understood that the amino acids within each of the categories listed above may be substituted for another of the same group.
Also understood is that amino acids may be substituted with analogs thathave similar steric characteristics but whose acidic or basic functions are mimicked using groups that are sterically similar but whose acidic orbasic properties may be altered, inverted, reduced or increased. Examples are: substitution of arginine by the analog wherein the guanidine group has a cyano group appended to one of the guanidine NH2 groups, substitution of arginine by citrulline, the amino acids wherein the guanidine group is replaced with a ureido function, and substitution of lysine by glutamine or by glutamic acid delta hydrazide.
4. Substitution of Amide Bonds
Another type of modification within the scope of the invention is the substitution of amide bonds within the backbone of a binding polypeptide. For example, to reduce or eliminate undesired proteolysis, or other degradation pathways which diminish serum stability, resulting in reduced or abolished bioactivity, or to restrict or increase conformational flexibility, it is common to substitute a*nide bonds within the backbone of the peptides with functionality that mimics the existing conformation or alters the conformation in the manner desired. Such modifications may produce increased binding affinity or improved pharmacokinetic behavior. It is understood that those knowledgeable in the art of peptide synthesis can make the following amide bond-changes for any amide bond connecting two amino acids with the expectation that the resulting peptides could have the same or improved activity: insertion of alpha-N-methylamides or peptide amide backbone thioamides, removal of the carbonyl to produce the cognate secondary amines, replacement of one amino acid with an aza-aminoacid to produce semicarbazone derivatives, and use of E-olefins and substituted E-olefins as amide bond surrogates.
5. Introduction of D-Amino Acids
Another approach within the scope of the invention is the introduction of D-alanine, or another D-amino acid, distal or proximal to a labile peptide bond. In this case it is also understood to those skilled in the art that such D-amino acid substitutions can, and at times, must be made, with D-amino acids whose side chains are not conservative replacements for those of the L-amino acid being replaced. This is because of the difference in chirality and hence side-chain orientation, which may result in the accessing of a previously unexplored region of the binding site of the target which has moieties of different charge, hydrophobicity, steric requirements, etc., than that serviced by the side chain of the replaced L-amino acid.
6. Modifications to Improve Pharmacokinetic or Pharmacodynamic Properties
It is also understood that use of the heteromultimeric constructs of the invention in a particular application may necessitate modifications of the peptide or formulations of the peptide to improve pharmacokinetic and pharmacodynamic behavior. It is expected that the properties of the peptide may be changed by attachment of moieties anticipated to bring about the desired physical or chemical properties. Where the heteromultimer includes binding polypeptides, such moieties affecting the pharmacokinetic and pharmacodynamic behavior may be appended to the peptide using acids or amines, via amide bonds or urea bonds, respectively, to the N- or C-terminus of the peptide, or to the pendant amino group of a suitably located lysine or lysine derivative, diaminopropionic acid, ornithine, or other amino acid in the peptide that possesses a pendant amine group or a pendant alkoxyamino or hydrazine group. The moieties introduced may be groups that are hydrophilic, basic, or nonpolar alkyl or aromatic groups depending on the peptide of interest and the extant requirements for modification of its properties.
7. Glycosylation of Amino Acid Residues
Yet another modification within the scope of the invention is to employ glycosylated amino acid residues (e.g., serine, threonine or asparagine residues), singly or in combination in the either the binding or the linker moiety or both. Glycosylation, which may be carried out using standard conditions, may be used to enhance solubility, alter pharmacokinetics and pharmacodynamics or to enhance binding via a specific or non-specific interaction involving the glycosidic moiety. In another apprloach glycosylated amino acids such as O-(2-acetamido-2-deoxy-3,4,6-tri-O-acetyl-β-D-glucopyranosyl) serine or the analogous threonine derivative (either the D- or L-amino acids) may be incorporated into the peptide during manual or automated solid phase peptide synthesis, or in manual or automated solution phase peptide synthesis. Similarly D- or L-Nγ-(2-acetamido-2-deoxy-3,4,6-tri-O-acetyl-β-D-glucopyranosyl)-asparagine can be employed. The use of amino acids glycosylated on a pendant oxygen, nitrogen or sulfur function by the agency of suitably functionalized and activated carbohydrate moieties that can be employed in glycosylation is anticipated. Such carbohydrate functions could be monosaccharides, disaccharides or even larger assemblies of oligosaccharides (Kihlberg, Jan., “Glycopeptide synthesis,” In: Fmoc Solid Phase Peptide Synthesis—A Practical Approach, Chan, W. C. and White, P. D. Eds., Chap. 8, pp. 195-213 (Oxford University Press, New York, NY 2000).
Also anticipated is the appendage of carbohydrate functions to amino acids by means other than glycosylation via activation of a leaving group at the anomeric carbon. Linkage of the amino acid to the glycoside is not limited to the formation of a bond to the anomeric carbon of the carbohydrate function. Instead, linkage of the carbohydrate moiety to the amino acid could be through any suitable, sufficiently reactive oxygen atom, nitrogen atom, carbon atom or other pendant atom of the carbohydrate function via methods employed for formation of C-heteroatom, C—C or heteroatom-heteroatom (examples are S—S, O—N, N—N, P—O, P—N) bonds known in the art.
8. Formation of Salts
It is also within the scope of the invention to form different salts that may increase the water solubility or the ease of formulation of these peptides. These may include, but are not restricted to, N-methylglucamine (meglumiAe), acetate, oxalates, ascorbates etc.
9. Structural Modifications that Retain Structural Features
Yet another modification within the scope of the invention is truncation of cyclic polypeptides. The cyclic nature of many polypeptides of the invention limits the conformational space available to the peptide sequence, particularly within the cycle. Therefore truncation of the peptide by one or more residues distal or even proximal to the cycle, at either the N-terminal or C-terminal region may provide truncated peptides with similar or improved biological activity. A unique sequence of amino acids, even as small as three amino acids, which is responsible for the binding activity, may be identified, as noted for RGD peptides. See, e.g., E. F. Plow et al., Blood (1987), 70(1), 110-5; A. Oldberg et al., Journal of Biological Chemistry (1988), 263(36), 19433-19436; R. Taub et al., Journal of Biological Chemistry (1989 Jan. 5), 264(1), 259-65; A. Andrieux et al., Journal of Biological Chemistry (1989 Jun. 5), 264(16), 9258-65; and U.S. Pat. Nos. 5,773,412 and 5,759,996, each of which is incorporated herein by reference in its entirety.
It has also been shown in the literature that large peptide cycles can be substantially shortened, eliminating extraneous amino acids, but substantially including the critical binding residues. See U.S. Pat. No. 5,556,939, which is incorporated herein by reference in its entirety. Shortened cyclic peptides can be formed using disulfide bonds or amide bonds of suitably located carboxylic acid groups and amino groups.
Furthermore, D-amino acids can be added to the peptide sequence to stabilize turn features (especially in the case of glycine). In another approach alpha, beta, gamma or delta dipeptide or turn mimics (such as α, β, γ, or δ turn mimics) some of which are shown in structures 1, 2 and 3, below, can be. employed to mimic structural motifs and turn features in a peptide and simultaneously provide stability from proteolysis and enhance other properties such as, for example, conformational stability and solubility (structure 1: Hart etal., J. Org. Chem., 64, 2998-2999(1999); structure 2: Hanessian et al., “Synthesis of a Versatile Peptiddmimetic, Scaffold” in Methods in Molecular Medicine, Vol. 23: Peptidomimetics Protocols, W. M. Kazmierski Ed. (Humana Press Inc. Totowa N.J. 1999), Chapter 10, pp. 161-174; structure 3: WO 01/16135.
Additionally, a region in a cyclic peptide that contains a pair of amino acids can be replaced with a single amino acid that spans the same distance or a similar distance. Such amino acids may act as a mimetic of the structure of the pair of amino acids replaced or they may merely act as a spacer, especially when information is available (as from alanine scans, D-amino acid scans or other techniques designed to probe the necessity or contribution of particular amino acids in a structure to the biological activity or the desired conformation of the substance) that indicates that the pair of amino acids is non-critical to the activity of the compound. Such spacer amino acids can be drawn from a pool of a vast array of compounds that have four intervening atoms between a carboxylic acid function and an amino group. Examples of such compounds are: 4-aminobenzoic acid, 4-aminocyclohexane carboxylic acid, 5-aminovaleric acid, 5-hydrazinobutanoic acid, 3-aminomethylcyclobutanecarboxylic acid, 1-aminocyclobutane-3-acetic acid, 3-aminophenylacetic acid and N-aminoisonipecotic acid. The invention also includes other compounds wherein the essential spacer element is preserved while other functionality that may enhance the binding activity of the peptide is included in such molecules.
10. Substitution of Disulfide Mimetics
Also included within the scope of the invention is the substitution of disulfide mimetics for disulfide bonds within the binding polypeptides of the invention. When disulfide-containing peptides are employed in generating heteromultimeric constructs, the disulfide bonds might need to be replaced to avoid certain difficulties that are sometimes posed by the presence of a disulfide bond. For example, when generating heteromultimeric 99mTc (or other radionuclide)-based radiopharmaceuticals or certain other hetermultimeric constructs the presence of the disulfide bond can be a significant problem. The integrity of the disulfide bond is difficult to maintain during procedures designed to incorporate 99mTc via routes that are reliant upon the reduction of pertechnetite ion and subsequent incorporation of the reduced Tc species into substances bearing Tc-compatible chelating groups. This is because the disulfide bond is rather easily reduced by the reducing agents commonly used in kits devised for one-step preparation of radiopharmaceuticals. Therefore, the ease with which the disulfide bond can be reduced during Tc chelation may require substitution with mimetics of the disulfide bonds. Accordingly, another modification within the scope of the invention is to substitute the disulfide moiety with mimetics, utilizing the methods disclosed following, or others known to those skilled in the art, while retaining the activity and other desired properties of the binding polypeptides used in the invention:
a. Oxime Linker
The oxime moiety has been employed as a linker by investigators in a number of contexts. Of the most interest is the work by Wahl, F and Mutter, M, Tetrahedron Lett. (1996) 37, 6861-6864). The amino acids containing an aminoalcohol function (4), and containing an alkoxyamino function (5a or 5b), are incorporated into the peptide chain, not necessarily at the end of the peptide chain. After formation of the peptide, the sidechain protecting groups are removed. The aldehyde group is unmasked and an oxime linkage is formed.
b. Lanthionine Linker
Lanthionines are cyclic sulfides, wherein the disulfide linkage (S—S) is replaced by a (C—S) linkage. Thus the lability to reduction is far lower and this linkage should be stable to stannous chloride. Lanthionines may be prepared by a number of methods.
i. Preparation of Lanthionines using Bromoacetylated Peptides
Lanthionines are readily prepared using known methods. See, for example, Robey et al. (Robey, F. A. and Fields, R. L., Anal. Biochem. (1989) 177, 373-377) and Inman, et al. (Inman, J. K.; Highet, P. F.; Kolodny, N.; and Robey, F. A. Bioconjugate Chem. (1991) 2, 458-463; Ploinsky, A. Cooney, M.C. Toy-Palmer, A. Osapay, G. and Goodman, M. J. Med. Chem. (1992) 35, 4185-4194; Mayer, J. P.; Zhang, J.; and Liu, C. F. in: Tam, J. P. and Kaumaya, P. T. P. (eds), “Peptides, Frontiers of Peptide Science,” Proceedings of thel 15th American Peptide Symposium,June 14-19 Nashville, Tenn. Klumer Academic Pub. Boston. pp 291-292; Wakao, Norihiro; Hino, Yoichi; Ishikawa, Ryuichi. Jpn. Kokai Tokkyo Koho (1995), 7 pp. JP 07300452 A2 19951114 Heisei; JP 95-49692 19950309; JP 94-41458 19940311 have published in this area. Preparation of peptides using Boc automated peptide synthesis followed by coupling the peptide terminus with bromoacetic acid gives bromoacetylated peptides in good yield. Cleavage and deprotection of the peptides is accomplished using HF/anisole. If the peptide contains a cysteine group its reactivity can be controlled with low pH. If the pH of the medium is raised to 6-7, then either polymerization or cyclization of the peptide takes place. Polymerization is favored at high (100 mg/mL) concentration, whereas cyclization is favored at lower concentrations (1 mg/mL), e.g., in Scheme 1 below, 6 cyclizes to 7.
Inman et al. demonstrated the use of Nα-(Boc)-Nε-[N-(bromoacetyl)-β-alanyl]-L-lysine as a carrier of the bromoacetyl group that could be employed in Boc peptide synthesis, thus allowing placement of a bromoacetyl bearing moiety anywhere in a sequence. In preliminary experiments it was found that peptideswith 4-6 amino acids separating the bromoacetyl-lysine derivative from a cysteine tend to cyclize, indicating the potential utility of this strategy for preparation of lanthionines of widely varying ring size.
Alternatively, a peptide may be prepared by fmoc peptide synthesis methodology on safety catch resin or on Rink-amide resin. The N-terminal amino group can be unmasked using piperidine/DMF or using 2% DBU in DMF. Then the resin can be neutralized by treatment with mild acid such as acetic acid to remove traces of the strongly nucleophilic piperidine or strongly basic DBU. Subsequently the resin can be treated with DIEA to remove the acetic acid which is present as ion pairs with the N-terminal amino groups on the resin. Washing with DMF then removes traces of DIEA and DIEA acetate. A bromoacetyl group is appended by treatment of the resin with bromoacetic acid and DIC. Treatment of the resin with Reagent B or optimally a related TFA-based cleavage cocktail which employs a minimum of scavengers (for example TFA-H2O-anisole, 90:5:5) removes the side chain protecting groups. The peptide is precipitated by addition of ether, collected, redissolved in DMF and the nucleophilic displacement of bromide ion from the bromoacetyl group by the cysteine thiol is conducted in dilute solution in the presence of a suitable base such as DIEA. The crude precipitated peptide may also be dissolved in water or in a mixture of water and a suitable organic cosolvent such as DMSO, NMP, DMA, methanol, ethanol, n-propanol, isopropanol, n-butanol, isobutanol, glyme, diglyme, triglyme, tetraglyme, tetrahydrofuran or dioxane, the pH of the solution is adjusted to 7.0-8.0 by addition of a base such as N-methylglucamine or ammonium hydroxide and the mixture is stirred at ambient temperature. The formation of the lanthionine is followed using HPLC and mass spectroscopy. Upon completion of the reaction the desired peptide is purified by gel filtration, HPLC and other techniques for purification of peptides known to those skilled in the art.
ii. Preparation of Lanthionines via Cysteine Thiol Addition to Acrylamides
Several variants of this strategy may be implemented. Resin-bound serine can be employed to prepare the lanthionine ring on resin either using a bromination-dehydrobromination-thiol addition sequence or by dehydration with disuccinimidyl carbonate followed by thiol addition. Ploinsky et al., M. J. Med. Chem., 35:4185-4194 (1992); Mayer et al., “Peptides, Frontiers of Peptide Science”, in Proceedings of the 15th American Peptide Symposium, Tam & Kaumaya (eds.), Jun. 14-19, 1995, Nashville, Tenn. (Kluwer Academic Pub. Boston) pp. 291-292. Conjugate addition of thiols to acrylamides has also been amply demonstrated and a reference to the addition of 2-mercaptoethanol to acrylamide is provided. Wakao et al., Jpn. Kokai Tokkyo Koho, JP 07300452 A2 (1995).
c. Diaryl Ether or Diarylamine Linkage
i. Diaryl Ether Linkage from Intramolecular Cyclization of Aryl Boronic Acids and Tvrosine
The reaction of arylboronic acids with phenols, amines and heterocyclic amines in the presence of cupric acetate, in air, at ambient temperature, in dichloromethane using either pyridine or triethylamine as a base to provide unsymmetrical diaryl ethers and the related amines in good yields (as high as 98%) has been reported. See, e.g., Evans et al., Tetrahedron Lett., 39:2937-2940 (1998); Chan et al., Tetrahedron Lett., 39:2933-2936 (1998); Lam et al., Tetrahedron Lett., 39-2941-2944 (1998). In the case of N-protected tyrosine derivatives as the phenol component, the yields were also as high as 98%. This demonstrates that amino acid amides (peptides) are expected to be stable to the transformation and that yields are high. Precedent for an intramolecular reaction exists in view of the facile intramolecular cyclizations of peptides to lactams, intramolecular biaryl ether formation based on the SNAR reaction and the generality of intramolecular cyclization reactions under high dilution conditions or on resin, wherein the pseudo-dilution effect mimics high dilution conditions.
d. Formation of Cyclic Peptides with a Lactam Linkage via Intramolecular Native Chemical Ligation
Another approach that may be employed involves intramolecular cyclization of suitably located vicinal amino mercaptan functions (usually derived from placement of a cysteine at a terminus of the linear sequence or tethered to the sequence via a side-chain nitrogen of a lysine, for example) and aldehyde functions to provide thiazolidines which result in the formation of a bicyclic peptide, one ring of which is that formed by the residues in the main chain, and the second ring being the thiazolidine ring. Scheme 2, above, provides an example. The required aldehyde function can be generated by sodium metaperiodate cleavage of a suitably located vicinal aminoalcohol function, which can be present as an unprotected serine tethered to the chain by appendage to a side chain amino group of a lysine moiety. In some cases, the required aldehyde function is generated by unmasking of a protected aldehyde derivative at the C-terminus or the N-terminus of the chain. An example of this strategy is found in: Botti, P.; Pallin, T. D. and Tam, J. P. J. Am. Chem. Soc. 1996, 118, 10018-10034.
11. Lactams Based on Intramolecular Cyclization of Pendant Amino Groups with Carboxyl Groups on Resin
Macrocyclic peptides can be prepared by lactam formation by either head to tail or by pendant group cyclization. The basic strategy is to prepare a fully protected peptide wherein it is possible to remove selectively an amine protecting group and a carboxy protecting group. Orthogonal protecting schemes have been developed. Of those that have been developed, the allyl, trityl and Dde methods have been employed most. See Mellor et al., “Synthesis of Modified Peptides,” in Fmoc Solid Phase Synthesis: A Practical Approach, White and Chan (eds) ([Oxfoerd University Press, New York, 2000]), Chapt. 6, pp. 169-178. The Dde approach is of interest because it utilizes similar protecting groups for both the carboxylic acid function (Dmab ester) and the amino group (Dde group). Both are removed with 2-10% hydrazine in DMF at ambient temperature. Alternatively, the Dde can be used for the amino group and the allyl group can be used for the carboxyl.
A lactam function, available by intramolecular coupling via standard peptide coupling reagents (such as HATU, PYBOP etc), could act as a surrogate for the disulfide bond. The Dde/Dmab approach is shown in Scheme 3a, below.
Thus, a linear sequence containing, for example, the Dde-protected lysine and Dmab ester may be prepared on a Tentagel-based Rink amide resin at low load (˜0.1-0.2 mmol/g). Deprotection of both functions with hydrazine is then followed by on-resin cyclization to. give the desired products.
In the allyl approach, shown in Scheme 3b, the pendant carboxyl which is to undergo cyclization is protected as an allyl ester, and the pendant amino group is protected as an alloc group. On resin, both are selectively unmasked by treatment with palladium tris-triphenylphosphine in the presence of N-methylmorpholine and acetic acid in DMF. Residual palladium salts are removed using sodium diethyldithiocarbamate in the presence of DIEA in DMF, followed by subsequent washings with DMF. The lactam ring is then formed employing HATU/HOAt in the presence of N-methylmorpholine. Other coupling agents can be employed as described above. The processing of the peptide is then carried out as described above to provide the desired peptide lactam.
Subsequently cleavage from resin and purification may also be carried out. For functionalization of the N-terminus of the peptide, it is understood that amino acids, such as trans-4-(iVDde)methylaminocyclohexane carboxylic acid, trans-4-(iVDde)methylaminobenzoic acid, or their alloc congeners could be employed. Yet another approach is to employ the safety catch method to intramolecular lactam formation during cleavage from the resin.
12. Cyclic Peptides Based on Olefin Metathesis
The Grubbs reaction (Scheme 4, below) involves the metathesis/cyclization of olefin bonds and is illustrated as shown below. See, e.g., Schuster et al., Angewandte. Chem. Int. Edn Engl., 36:2036-2056 (1997); Miller et al., J. Am.Chem. Soc 118:9606-9614 (1996).
It is readily seen that if the starting material is a diolefin (16), the resulting product will be cyclic compound 17. The reaction has in fact been applied to creation of cycles from olefin-functionalized peptides. See, e.g., Pemerstorfer et al., Chem. Commun., 20:1949-50 (1997); Covalent capture and stabilization of cylindrical β-sheet peptide assemblies, Clark et al., Chem.Eur. J., 5(2):782-792 (1999); Highly efficient synthesis of covalently cross-linked peptide helices by ring-closing metathesis, Blackwell et al., Angew. Chem., Int. Ed., 37(23):3281-3284 (1998); Synthesis of novel cyclic protease inhibitors using Grubbs olefin metathesis, Ripka et al., Med. Chem. Lett., 8(4):357-360 (1998); Application of Ring-Closing Metathesis to the Synthesis of Rigidified Amino Acids and Peptides, Miller et al., J. Am. Chem. Soc., 118(40):9606-9614 (1996); Supramolecular Design by Covalent Capture, Design of a Peptide Cylinder via Hydrogen-Bond-Promoted Intermolecular Olefin Metathesis, Clark et al., J. Am. Chem. Soc., 117(49):12364-12365 (1995); Synthesis of Conformationally Restricted Amino Acids and Peptides Employing Olefin Metathesis, Miller et al., J. Am. Chem. Soc., 117(21):5855-5856 (1995). One can prepare either C-allylated amino acids or possibly N-allylated amino acids and employ them in this reaction in order to prepare carba-bridged cyclic peptides as surrogates for disulfide bond containing peptides.
One may also prepare novel compounds with olefinic groups. Functionalization of the tyrosine hydroxyl with an olefin-containing tether is one option. The lysine ε-amino group may be another option with appendage of the olefin-containing unit as part of an acylating moiety, for example. If instead the lysine side chain amino group is alkylated with an olefin containing tether, it can still function as a point of attachment for a reporter as well. The use of 5-pentenoic acid as an acylating agent for the lysine, omithine, or diaminopropionic side chain amino groups is another possibility. The length of the olefin-containing tether can also be varied in order to explore structure activity relationships.
13. Manipulation of Peptide Sequences
Other modifications within the scope o the invention include manipulations of peptide sequences which can be expected to yield peptides with similar or improved biological properties. Theseinclude, e.g., amino acid translocations (swapping amino acids in the sequence), use of retroinverso peptides in place of the original sequence or a modified original sequence, peptoids, retro-inverso peptoid sequences, and synthetic peptides. Structures wherein specific residues are peptoid instead of peptidic, which result in hybrid molecules, neither completely peptidic nor completely peptoid, are contemplated as well.
14. Linkers
Additionally, modifications within the invention include introduction of linkers or spacers between the targeting sequence of the binding moiety or binding polypeptide and the detectable label or therapeutic agent. For example, use of such linkers/spacers may improve the relevant properties of the binding peptides (e.g., increase serum stability, etc.). These linkers may include, but are not restricted to, substituted or unsubstituted alkyl chains, polyethylene glycol derivatives, amino acid spacers, sugars, or aliphatic or aromatic spacers common in the art.
For example, suitable linkers include homobifunctional and heterobifunctional cross-linking molecules. The homobifunctional molecules have at least two reactive functional groups, which are the same. The reactive functional groups on a homobifunctional molecule include, for example, aldehyde groups and active ester groups. Homobifinctional molecules having aldehyde groups include, for example, glutaraldehyde and subaraldehyde.
Homobifunctional linker molecules having at least two active ester units include esters of dicarboxylic acids and N-hydroxysuccinimide. Some examples of such O-succinimidyl esters include disuccinimidyl suberate and dithio-bis-(succinimidyl propionate), and their soluble bis-sulfonic acid and bis-sulfonate salts such as their sodium and potassium salts.
Heterobifunctional linker molecules have at least two different reactive groups. Some examples of heterobifinctional reagents containing reactive disulfide bonds include N-succinimidyl 3-(2-pyridyl-dithio)propionate (Carlsson et al., Biochem J. 173:723-737 (1978)), sodium S-4-succinimidyloxycarbonyl-alpha-methylbenzylthiosulfate, and 4-succinimidyloxycarbonyl-alpha-methyl-(2-pyridyldithio)toluene. N-succinimidyl 3-(2-pyridyldithio)propionate is preferred. Some examples of heterobifunctional reagents comprising reactive groups having a double bond that reacts with a thiol group include succinimidyl 4-(N-maleimidomethyl)cyclohexahe-1-carboxylate and succinimidyl m-maleimidobenzoate. Other heterobifunctional molecules include succinimidyl 3-(maleimido)propionate, sulfosuccinimidyl 4-(p-maleimido-phenyl)butyrate, sulfosuccinimidyl 4-(N-maleimidomethyl-cyclohexane)-1-carboxylate, maleimidobenzoyl-5N-hydroxy-succinimide ester.
Furthermore, linkers which are combinations of the molecules and/or moieties described above, can also be employed to confer special advantage to the properties of the peptide. Lipid molecules with linkers may be attached to allow formulation of ultrasound bubbles, liposomes or other aggregation-based constructs. Such constructs could be employed as agents for targeting and delivery of a diagnostic reporter, a therapeutic agent (e.g., a chemical “warhead” for therapy), or a combination of these.
15. Additional Peptide Constructs
In one embodiment of the present invention, peptide1 (referred to above as A in the construct A-B-C-D-E-B′-F) may comprise 3-50 (D or L)-alpha amino acids, preferably 8-24 amino acids (with or without disulfide linkages), which can be joined via an amide bond to spacer1 (referred to above as C in the construct A-B-C-D-E-B′-F) by an amino group, provided by the first branching group (referred to above as B in the construct A-B-C-D-E-B′-F), for example the epsilon amino group where lysine is the branching group B, or the gamma amino group of omithine where ormithine is the branching group B, or the beta amino group of diaminopropionic acid, where diaminopropionic acid is the branching group B at the N- or C-terminus of peptide1.
Peptide1 may also comprise other monomers described herein, such as those set forth in Table 1 in Section 19. In one embodiment, peptide1 has specificity for a first binding site of a target. In another embodiment, peptide1 is specific for a binding site on a receptor such as, for example, KDR or cMet.
Alternatively, the alpha amino group of branching group B can be employed to form the bond with the spacer1, and the side chain amino groups of the branching group B can be the point of attachment of the branching group B to peptide1. The branching group B does not have to be limited to the aforementioned residues, which are provided as examples. Peptide1 can be attached to the amino acid(s) that constitute the branching group B, such as serine, cysteine, S-carboxymethylcysteine, S-2-thiopyridylcysteine, aspartic acid, glutamic acid, p-aminophenylalanine, propargyl or other alkynyl substituted glycine derivatives, and other amino acids which, after forming a peptide bond with peptide1, possess side chain hydroxy, carboxylic acid, thiol, disulfide, alkylcarboxylic acid, amino, alkylamino, alkynyl or other functions which can be employed to form a bond with spacer1. See
Preferred branching groups include lysine, omithine, aspartic acid and glutamic acid.
In the cases where the C-terminus of the peptide is the point of attachment of the branching group, the actual C-terminus of the peptide1 or peptide2 construct is the acyl group of the branching group B, which may be present as a primary carboxamide or a carboxamido group NH-T. The group T can be amino, alkylamino, aminoalkyl, alkyl, alkenyl, alkoxycarbonyl, alkynyl, aryl, allyl, propargyl, heteroaryl, carboxyalkyl, carboxyamidoalkyl,. hydrogen, hydroxyl, hydroxyalkyl, polyhydroxyalkyl, polyethyleneoxy (meaning the structure (CH2CH2O)n-G, where G is a terminating group selected from aminoalkyl, alkyl, hydroxyalkyl, alkyl, carboxyl, methylenecarboxy, alkylcarboxamido- or alkylcarboxy(alkyl)amido-, alkylformyl, 2-mercaptoethyl, or 2-pyridyldithioalkyl where the alkyl group contains from 2-20 carbon atoms and n=0-150), where the number of carbon atoms in the chain or the ring structure varies from 0-150.
The functionality described above for T may be introduced to the nitrogen of a Rink amide resin by reactions and techniques known in the art. For example, where T refers to alkyl groups, aralkyl groups and/or heteroarylalkyl groups, these may be introduced by reaction of alkyl aldehydes with Rink amide resin under mildly dehydrating conditions in the presence of sodium borohydride or sodium cyanoborohydride. Similarly, the reaction of more complex derivatives such as bifunctional molecules, where one of the two functional groups is an aldehyde with Rink amide resin in the presence of sodium cyanoborohydride at pH 5, will provide a monosubstituted alkyl Rink amide resin wherein the alkyl group bearirig the second functional group is present. The, only requirement is that the other functional group be compatible with sodium cyanoborohydride.
The introduction of aryl groups may be conducted by preparations of the original Rink amide resin moiety employing an aromatic amine to introduce the nitrogen into the system by solvolytic means, or by the use of well established techniques of nucieophilic aromatic substitution on activated aromatic compounds. Another method for the introduction of aryl groups on to the nitrogen of the ring amide resin is via the reaction of haloaromatics compounds in the presence of metal catalysts, that promote the coupling of amino groups. Alkyl or functionalized alkyl groups may also be introduced by alkylation of the Rink amide resin amino group. Hydroxyethyl groups may be introduced using the alkylation of the Rink amide resin amino group with suitably O-protected 2-haloethyl groups; or by alkylation with diethylcarbonate, for example. Those skilled in the art will also recognize that reporter-sp groups may be introduced as part of the group T to the Rink amide resin, and further, that these, if sufficiently durable, could be carried through the entire synthesis to the end if desired. In another embodiment peptide1-branching group B-spacer1 and peptide2-branching group B′-spacer2 molecules can be assembled on a safety-catch resin, which, upon activation, can be treated with bifunctional amines bearing the group(s) T as described above to provide, in solution, constructs wherein the C-terminal amide of the branching group is. amidated with the NH-T group.
In denoting the protected or leaving group-functionalized derivatives or reporter-sp-functionalized derivatives of amino acids of branching group B or branching group B′ that are to be further reacted to provide the proceeding products in the synthesis, those skilled in the art will understand that the branching group ultimately contained in the final construct will comprise the amino acids or other described moieties that have the leaving groups or protecting groups no longer present. Specifically in the art, it is known that such protecting groups or leaving groups are temporarily employed for the purposes of directing the specificity of the synthesis and that the descriptions of such functionalized amino acids as the branching groups is provided to facilitate the understanding of the synthetic paths or strategies that would employ them. For example, if a branching group is described as Lys[fmoc-Lys(ivDde)], it is understood that the ultimate construct will contain the -Lys(Lys)- function devoid of the protecting groups, and that in their place will be the bonds between the formerly protected atoms and the other moieties such as peptide1, peptide2 or the spacer1 or spacer2 or appended reporter-sp groups, for example.
In the case where the branching group B has some group other than an amino group for bond formation with spacer1, those skilled in the art will understand that spacer1 will be constituted with functionality suitable for bond formation with B. For example, if the branching group B possesses a free thiol function, spacer1 can be 2-aminoethyl-2-pyridyldissulfide or an amine-protected version of that compound, which ultimately yields as the spacer, a 2-aminoethylthio moiety. After formation of the disulfide bond, the amino group of the spacer1 would be employed in reactions with the linker function D as described below. Alternatively, peptide1 can be joined to spacer1 via the alpha amine of an amino acid at the N-terminus of peptide1, or to a moiety at the N-terminus of peptide1 which possesses any of the distal or side chain functions disclosed above as belonging to the branching group. Such methods are shown in
Spacer1 (referred to above as C in the construct A-B-C-D-E-B′-F) can be absent, or may comprise one or more amino acids, including, e.g., naturally occurring or unnatural alpha amino acids and naturally occurring or unnatural non-alpha amino acids. A diverse set of spacers can be used to modify the distance between peptide1 and the linker (referred to above as D in the construct A-B-C-D-E-B′-F), but also to provide a means to change the hydrophilicity or hydrophobicity of the dimeric construct. Examples of spacer1 that may be used in this invention include, without limitation, the following amino acids or linked series of amino acids or other bifunctional molecules:
Most preferably, spacer1 is 8-amino-3,5-dioxaoctanoic acid.
The linker D (referred to above as D in the construct A-B-C-D-E-B′-F), between spacer1 and spacer2 is, in one embodiment, a derivative of a dicarboxylic acid that joins spacer1 and spacer2 by amide bonds. The dicarboxylic acid employed to generate the activated linker is of the form HOOC-Z-COOH where Z can be of the form (CH2), to give compounds such as, e.g, CO2HCH2)n—CO2H where n=0-10; preferably glutaric acid (n=3). Preferably, the derivative of a dicarboxylic acid used as linker D is a glutaric acid bis N-hydroxysuccinimidy ester or a derivative thereof. The group Z can also contain N or O-substituted alkyl chains, which results in structures such as, e.g., those below:
The dicarboxylic acid employed to generate the linker D can also be a substituted aromatic or heterocyclic acid of the form HOOC—Z—COOH, where Z symbolizes the aromatic or heterocyclic nucleus which is the scaffold bearing the two carboxylic groups. Examples of such molecules include, without limitation, benzene-1,4-dicarboxylic acid, biphenyl-1,4′-dicarboxylic acid, (4-carboxymethoxy-phenoxy)-acetic acid, (4′-carboxymethoxy-biphenyl-4-yloxy)-acetic acid, N-methylpyrrole-2,5-dicarboxylic acid, pyridine-2,6-dicarboxylic acid, N-methylpyrrole-2,3-dicarboxylic acid, N-methylpyrrole-2,4-dicarboxylic acid, pyridine 2,3-dicarboxylic acid, pyridine-3,5-dicarboxylic acid, pyridine 3,4-dicarboxylic acid or piperidine 3,5-dicarboxylic acid. The group R in the linkers can be, e.g., acetyl, acylamino, acylaminoalkyl, amino, alkylamino, aminoalkyl, alkyl, alkenyl, alkoxycarbonyl, alkynyl, aryl, allyl, propargyl, heteroaryl, carboxyalkyl, carboxamido, carboxyamidoalkyl, formyl, hydrogen, hydroxy, hydroxyalkyl, polyhydroxyalkyl, polyethyleneoxy (meaning the structure (CH2CH2O)n-G where G is a terminating group selected from alkylamino, alkyl, alkylhydroxy, alkyl, carboxy, methylenecarboxy, alkylcarboxamido- or alkylcarboxy(alkyl)amido-, alkylformyl, 2-mercaptoethyl, or 2-pyridyldithioalkyl where the alkyl group contains from 2-20 carbon atoms and n=0-150) where the number of carbon atoms in the chain or the ring structure varies from 0-150. The saturated derivatives of the aromatic compounds described above, where Z is now a saturated derivative of the aromatic or heterocyclic Z, can also be employed as the linker D with the same groups R and G. Examples of the dicarboxylic acids, where Z is either aromatic or aliphatic, that can comprise linker D, are shown in
The dicarboxylic acids that are employed to form linker D can generally be activated for coupling to the free amine of spacer1 or spacer2 by formation of an active acylating species of the form X—C(═O)-Z-C(═O)—Y , where Z is the same as described above, and where X and Y are leaving groups. For example, such activated acylating derivatives, having the series of groups shown in
Though the linker D is preferably a dicarboxylic acid, those skilled in the art will realize that if the spacer1 (referred to as C above) after appendage to the branching group B, contains a pendant function such as the 2-pyridydissulfide function, then the linker D may be a bifunctional molecule, such that upon reaction with the mixed disulfide it can provide a pendant function (such as that of a carboxylic acid) that can be employed to form a peptide bond to an amino group of spacer2 to form the desired dimer. Thus, the linker may also be, for example, 4-mercaptobutanoic acid, which may be employed to displace 2-thiopyridine from the branching group. Then the pendant function of the linker D would be the carboxyl group, which could be activated to couple to the amino group of peptide2-branching group B′-spacer2-NH2 (where NH2 is an amino group and not the amido nitrogen of a carboxamide) to provide the assembled dimer.
In another preferred embodiment, described in more detail in Sectio 18, the linker D is a diamine linker or derivative thereof
Spacer2 (referred to above as E in the construct A-B-C-D-E-B′-F) can be absent, or may comprise one or more amino acids, including, e.g., naturally occurring or unnatural alpha amino acids and naturally occurring or unnatural non-alpha amino acids, or other bifunctional molecules that can be appended to two discrete chemical entities. A diverse set of spacers can be used to modify the distance between peptide2 and linker D but also to provide a means to change the hydrophilicity or hydrophobicity of the dimeric construct. Examples of spacer2 that may be used in this invention include, without limitation, the following amino acids or linked series of amino acids or other biftnctional molecules:
Gly
Ser-Gly-Ser
Ser(S)Gly-Ser(S)
where the group S comprises a hydrophilic finction such as a sugar moiety which may be selected from N-acetylgalactoseamine, D-(+)-allose, D-(+)-altrose, D-(+)-glucose, D-(+)-mannose, D-(−)-gulose, D-(−)-idose, D-(+)-galactose, D-(−)-talose, D-(−)-ribose, D-(−)-arabinose, D-(+)-xylose or D-(−)-lyxose and the linkage of the serine side-chain oxygen and the sugar is via the anomeric carbon;
Most preferably, spacer2 is 8-amino-3,5-dioxaoctanoic acid.
Peptide2 (referred to above as F in the construct A-B-C-D-E-B′-F) may, in one embodiment, comprise 3-50 (D or L)-alpha amino acids, preferably 8-24 amino acids (with or without disulfide linkages), which can be joined via an amide bond to spacer2 (referred to as E in the construct A-B-C-D-E-B′-F) by an amino group of peptide2, provided by the epsilon amino group of lysine, or the gamma amino group of omithine, or the beta amino group of 2,3-diaminopropionic acid at the N- or C-terminus of peptide2. Alternatively, peptide2 can be joined to spacer2 via the alpha amine of an amino acid at the N-terminus of peptide2, or to a moiety at the N-terminus of peptide2 that possesses any of the side chain or distal functional groups as disclosed above as belonging to a branching group B or branching group B′.
Peptide2 may also comprise other monomers described herein, such as those set forth in Table 1 in Section 19. In one embodiment, peptide2 has specificity for a first binding site of a target. In another embodiment, peptide2 is a peptide of 3-50 amino acids and is specific for a binding site on a receptor such as, for example, KDR or cMet.
Alternatively, the alpha amino groups of the branching group B′ may be employed to form the bond with the spacer2, and the side chain amino groups of each of the aforementioned branching groups may be the point of attachment of the branching group B′ to peptide2. The branching group is not limited to the aforementioned residues, which are only provided as examples.
Peptide2 may also be attached to amino acids of the branching group B′, such as serine, cysteine, S-carboxymethylcysteine, S-2-thiopyridylcysteine, aspartic acid, glutamic acid, isonipecotic acid, p-aminophenylalanine, propargyl or other alkynyl substituted glycine derivatives and other amino acids which, after forming a peptide bond with peptide2, possess side chain hydroxy, carboxylic acid, thiol, disulfide, alkylcarboxylic acid, amino, alkylamino, alkynyl or other functions which can be employed to form a bond with spacer2. In the case where the branching group B′ has a group other than an amino group for bond formation with spacer2, those skilled in the art will understand that spacer2 will be constituted with functionality suitable for bond formation with the branching group B′. For example, if the branching group B′ possesses a free thiol function, spacer2 could be chosen to be 2-aminoethyl-2-pyridyldissulfide or an amine-protected version of that compound. After formation of the disulfide bond the amino group would be employed in reactions with the linker D as described below.
Those skilled in the art will also understand that the branching group B′ linking peptide2 to spacer2 need not be an amino acid, but may also be a diamino compound of the type NH2—(CH2)n—NH2 where n=0-20, or of the type NH2—CH2(CH2)jO—(CH2(CH2)mO)n-CH2(CH2)p—NH2 where j=1-20, m=1-2, n=1-100 and p=1-20. Alternatively, peptide2 can be joined to spacer2 via the alpha amine of an amino acid at the N-terminus of peptide2, or to a moiety at the N-terminus of peptide2 that possesses any of the side chain functions disclosed above as belonging to the branching group B′.
A general synthesis can be initiated by the solid phase peptide synthesis of peptide1-branching group B and peptide2-branching group B′ with internal lysines (or other amino acids having a side-chain amino groups, such as ornithine, 2,3-diaminopropionic acid or isonipecotic acid, for example) protected as ivDde or aloc, where needed. The preparation of the peptide1 construct is shown in
The branching group B′ may be absent or may comprise other amino acids such as serine, cysteine, S-carboxymethylcysteine, S-2-thiopyridylcysteine, aspaitic acid, glutamic acid, p-aminophenylalanine, propargyl or other alkynyl substituted glycine derivatives as described for the branching group B, as well; but the illustration of this approach will be discussed in the context of the use of lysine residues as the branching group B′. The corresponding spacers for each peptide, namely spacer1 and spacer2, may be appended by using amide bond-forming coupling reactions in a suitable solvent such as DMSO, NMP, DMF, DMA or dichloromethane (the alpha amino group is protected as Fmoc then removed following coupling), in separate flasks to the branchin g groups B and B′ of peptide1 and peptide2 on a solid support such as Rink amide resin.
After cleavage of each the peptides from the solid support, any disulfide linkages are formed by aerial oxidation or the use of other oxidative techniques known in the art for disulfide formation (e.g., HgCl2, Tl(OOCCF3)3, Me3SiCl/DMSO, Iodine) in aqueous solution, optionally using dimethylsulfoxide, acetonitrile, DMF, DMA, tetrahydrofuran, dioxane, ethanol, methanol, n-propanol, ethylene glycol, isopropanol, isobutanol, n-butanol, tert-butanol, 1,2-dimethoxyethane, 2-ethoxyethanol, 2-ethoxyethoxy-ethanol, diglyme, triglyme or tetraglyme singly or in combination as cosolvent with water. In some cases it is necessary to employ the nonaqueous solvent by itself or using a minimal amount (<15%) of water. The disulfide bond forming reaction can alsobe carried out simultaneously with acidolytic cleavage and deprotection employing TFA-based solvent mixtures. (see Alberico, F.; Annis, L.; Royo, M. and Barany, G., “Preparation and handling of peptides containing methionine and cysteine,” Fmoc Solid Phase Peptide Synthesis—A Practical Approach (Chan, W. C. and White, P. D. Eds.) Oxford University Press, New York, N.Y. Chap. 4, pp. 87-114 (2000); see also Andreu, D.; Alberico, F.; Sole, N. A.; Munson, M. C.; Ferrer, M. and Barany, G., “Formation of Disulfide Bonds in Synthetic Peptides and Proteins,” Peptide Synthesis Protocols (Pennington, M. W. and Dunn, B. M. Eds.) Humana Press, Totowa N.J. Chap. 7, pp 91-169 (1994)). The resulting cyclic disulfide peptide is then purified by HPLC or other appropriate methods (vide infra). If, prior to disulfide bond formation, spacer1 or spacer2 has not been added, they can be added by solution coupling, in a suitable solvent such as DMSO, NMP, DMF, DMA or dichloromethane, of the protected (where necessary) spacer followed by removal of the protecting group (for example, fmoc).
The dimer (see
The methods described herein may be used, for example, to prepare dimers such as those described in Example 9.
16. Reporter-SP Groups
Optionally, one or more reporter-sp molecules, which may be the same or different, may be attached to the branching groups as shown in
More specifically, reporter-sp molecules are molecules that either serve as reporters or special purpose molecules, or serve both functions. The term “reporters” refers to molecules that have attributes that allow their detection by sensing techniques which measure a signal by absorption or emission measurements, or a change in the level of absorption of a signal, whether directly generated by the reporter system, or influenced by the presence of the reporter system, in a portion of the electromagnetic frequency spectrum. Such molecules may provide a reflected signal or a different intensity of the input signal (attenuation or enhancement or time resolved methods), or may provide a signal of different frequency, a signal which is a harmonic of the stimulating signal or an emitted signal, or a signal which is affected by the input signal.
Examples of reporter molecules include, but are not limited to, diamagnetic or paramagnetic metal chelates, metal chelator systems, radiometal chelating systems, radioisotope-labeled molecules including metal chelators which bear the radiometal, dye molecules, fluorescent molecules, phosphorescent molecules, molecules absorbing in the UV spectrum, molecules capable of absorption of near or far infrared radiation, and molecules or supramolecular constructs that absorb and/or emit x-ray, gamma rays, beta particles, alpha particles, ultrasound, optical or magnetic signals.
SP molecules, also known as special purpose molecules, are defined as molecules that may or may not have a direct role in the interaction with a detection system, but have a functional attribute that facilitates the use of the peptidic constructs in some way. Such molecules, when appended to the peptidic construct, for example, may enable the incorporation of the peptidic construct into larger arrays of rnolecules (such as supramolecular constructs) which can be detected by equipment or apparatus employed for detection of signals, whether by presence or absence of the signal, a change in signal intensity, reflection of a signal or a derivative signal during or after a period of irradiation by the equipment or apparatus.
One notable example of a special purpose molecule is a phospholipid or lipid moiety. For example, phospholipid conjugated molecules may be incorporated into liposomes or into microbubbles. Liposomes may be employed to facilitate delivery of encapsulated solutions of chemotherapeutic agents, and the phospholipid-peptide conjugates can be incorporated into liposomes, thereby enabling the liposome to target a specific biomolecular target and release the therapeutic in higher concentration and proximity to the targeted region. Similarly, phospholipids bearing specialized molecules, such as targeting peptides, may be incorporated into microbubbles consisting of a bulk phospholipid and several other minor components which encapsulate a gas. The peptide is presented on the surface of the microbubble, and if a sufficient number of such peptides are presented on the surface of the microbubble, the microbubble may bind to a cell surface or an intravascular surface which expresses the biomolecular target. If successfully bound to the biomolecular target addressed by the peptide, then the microbubble may be detected via ultrasound imaging techniques, thereby allowing diagnosis or prognosis of a disease condition.
Special purpose molecules may also have other roles. For example, they may possess the capability to act as therapeutics, or as toxins employed for selective killing and/or inhibiting the growth of cancer cells, or for inhibiting or promoting the growth of normal tissues when required. A dual role as a reporter and as an SP molecule can be realized by radiometal chelates or other radioisotope-labeled molecules when they are appended to the peptidic construct; this is by virtue of the fact that the radiation emitted by the radioisotope, which performs a therapeutic role, may also be detected by imaging systems.
17. Attachment of the Reporter-SP Group
In the case in which preparation of a reporter-sp-functionalized dimer is desired, the branching group B emanating from peptide1 may comprise a pair of amino acid residues, each of which has an amino group bearing side-chain, such as, e.g., Lys(Lys), where the epsilon amino group of the C-terminal (first) lysine is amidated with the carbonyl group of a second lysine which has different protecting groups on its alpha nitrogen and epsilon nitrogen, or at least one of those nitrogen atoms is protected whereas the other is unprotected and available for reaction.
In one embodiment, it may be assumed that all protecting groups have been removed from the assembled dimer except for the aloc or the ivDde group that resides on the second lysine. The ivDde group is removed from the branching group B of the assembled dimer by treatment with 10% hydrazine in DMF. This is followed by standard post synthesis processing, which may include purification of the dimer by normal phase, reversed phase, hydrophilic interaction, ion exchange or other suitable forms of HPLC (singly or in combination), SPE (solid phase extraction), SEC (size exclusion chromatography), gel filtration, medium pressure or low pressure reverse or normal phase chromatography, or preparative thin layer chromatography techniques. The reporter-sp molecule is then conjugated to the dimer by reaction of the remaining lysine free epsilon amino group in the branching group B of peptide1. This is accomplished by activation of a carboxylic acid function of the reporter-sp molecule, using reagents such as DIC/HOBt, HBTU/DIEA, HATU/DIEA, BOP/DIEA, PyBOP/DIEA or other coupling agents known to those skilled in the art, or by the use of a preformed active acylating species in a suitable solvent such as DMSO, NMP, DMF, DMA or dichloromethane and treatment of the dimer with the active acylating reporter-sp molecule to provide the reporter-sp-functionalized dimer (see
In another embodiment, the pair of amino acids can be Lys-Lys, wherein the epsilon amino group of the C-terminal lysine is protected with, for example, an aloc or an ivDde group, and the pendant amino group of the preceding lysine of the branching group was employed in the dimer forming reaction described above.
Attachment of the reporter-sp function may also be carried out as follows: The dimer bearing the free amino group at the C-terminal lysine of the branching group B of peptide1 may be reacted with a bis-activated linker D molecule, preferably glutaric acid bis-NHS ester, in large excess, in a suitable solvent such as DMSO, NMP, DMF, DMA or dichloromethane. This step is followed by optionally evaporating the reaction solvent, then precipitation of the dimer by addition of a suitable solvent (one that will dissolve the excess bis-activated linker compound while precipitating the dimer orsequestering it in an insoluble phase, preferably a solvent such as ethyl acetate or ether). The resulting activated dimer, which bears the mono-NHS ester of the glutaric acid half amide, is isolated by decanting of the supernatant solution, which serves to remove the excess glutaric acid bis-NHS ester. Subsequent washings may be required to complete the dissolution and removal of remaining bis-activated linker reactant. The residue may now be dissolved in a suitable solvent such as DMSO, NMP, DMF, DMA or dichloromethane, and a reporter-sp molecule bearing an amino group can be added to the solution. Reaction of the amino group with the activated carboxyl group of the glutaryl half amide mono-NHS ester appended to the dimer will provide the reporter-sp-functionalized dimer (see
In yet another embodiment, the reporter-sp molecule can be attached to peptide1-branching group B before the assembly of the dimer. The resulting compound may be further elaborated to the reporter-sp-functionalized peptide1-branching group B-spacer1 —NH2 and finally reacted with a suitable species containing peptide2-branching group B′-spacer2-linker D to provide the desired reporter-sp-functionalized dimer construct. An additional measure of flexibility in this approach is that the position of the reporter-sp on the dimer can be controlled completely. Both aspects of the approach are explained below and shown in
For example, peptide1-branching group B, in which branching group B is Lys[fmoc-Lys(ivDde]-at the C-terminus, may be prepared by solid phase synthesis on, for example, Rink-amide resin. Removal of the fmoc group followed by reaction with an activated acylating reporter-sp (formed as described above) provides the resin-bound, reporter-sp functionalized peptide1-(Nα-reporter-sp-branching group B)-Rink amide resin, where the reporter-sp is appended to Nαof the lysine residue bearing the ivDde group. At this point, peptide1-(Nα-reporter-sp-branching group B)-Rink amide resin can be treated with hydrazine in DMF or DMA or another suitable solvent, to liberate the C-terminal lysine epsilon amino group. Execution of two deprotection (fmoc removal)-coupling cycles using activated spacer1, for example fmoc-8-amino-3,6-dioxaoctanoic acid NHS ester (note: recall that an intervening fmoc removal step is required) or the HOBt ester formed by in situ activation of the acid with HBTU or DIC/HOBt, foliowed by removal of the fmoc group and cleavage from resin, provides the construct peptide1-[-[reporter-sp-branching group B-(Nα-spacer1-NH2)], which may be either reacted with peptide2-branching group B′-spacer2-linker D-activated group to form the reporter-sp-functionalized dimer, or with a large excess of bis-activated linker D followed by washing off the excess bis-activated linker D as described above, to provide the construct peptide1-[Nα-reporter-sp-branching group B-(Nε-spacer1-linker D-activated group)], which can now be reacted with a stoichiometric amount or a slight excess of peptide2-branching group B′-spacer2-NH2 to provide the product peptide1-[Nα-reporter-sp-branching group B-(Nε-spacer1-linker D-spacer2-branching group B′-peptide2)]. This is shown in
If it is desired to append the reporter-sp to the Nε position of the lysine that is tethered to the Nε-nitrogen of the penultimate lysine of peptide1, one may simply remove the Nafmoc group from the construct peptide1-branching group B, where branching group B is Lys[fmoc-Lys(ivDde]-Rink amide resin, and then functionalize the free amino group with a spacer1 molecule such as, e.g., 9-amino, 17-boc-amino-10-oxo-3,6,12,15-tetraoxaheptadecanoic acid. This can be done by either sequential coupling of fmoc-8-amino-3,6-dioxaoctanoic acid and 8-boc-amino-3,6-dioxaoctanoic acid (with an intervening fmoc removal step) in the presence of a suitable activating agent such as HBTU and a base such as DIEA, or DIC/HOBt, or coupling 9-amino, 17-boc-amino-10-oxo-3,6,12,15-tetraoxaheptadecanoic acid using a suitable activating agent such as HBTU in the presence of a base such as DIEA, or DIC/HOBt for example, to provide the construct peptide1-branching group B-spacer1-NH-boc. Removal of the Nε-ivDde group with hydrazine in a suitable solvent such as DMF or DMA, followed by reaction of the Nε-amino group of the lysine residue tethered to the Nε of the preceding lysine residue of the branching group, provides the construct peptide1-(Nα-spacer1-NH-boc)branching group B-(Nε-reporter-sp). Cleavage of this from the resin followed by disulfide cyclization as described above, gives the construct peptide1-(Nα-spacer1-NH2branching group B-(Nε-reporter-sp), where NH2 is an amino group available for coupling to an active acylating species. This material can then be reacted with peptide2-branching group B′-spacer2-linker D-leaving group to provide the fully assembled reporter-sp-functionalized dimer construct peptide1-(Nα-spacer1-linker D-spacer2-branching group B′-peptide2)branching group B-(Nε-reporter-sp). This is shown in
The invention includes dimers wherein there are two or even more reporter-sp groups. Merely. employing moieties for the branching group B′, that are described herein as employed for constructing the structure branching group B (which is associated with peptide1), such as, e.g., Lys(Lys) or other appropriate dipeptide constructs bearing side chain groups that can be orthogonally protected and liberated when needed, will allow facile attachment of a reporter-sp to the branching group B′. Further elaboration of each of the peptide constructs to be incorporated into the dimer by appending in separate flasks, spacer1 and spacer2 respectively to branching group B and branching group B′, and then joining the two reporter-sp-functionalized peptide-branching group-spacer structures with linker D, will provide dimeric entities wherein peptide1 and peptide2 each bear a reporter-sp function. Such constructs can be valuable for double labeling experiments, conformational studies, biodistribution studies and metabolism studies, for example (see FIGS. 37A-37E for general structures accessible by this methodology).
Those skilled in the art will recognize that in the event that more than one lysine, ormithine or 2,3-diaminopropionic acid is present in the sequence of peptide1 or peptide2, besides the lysine or other aforementioned related amino acids residues that comprise the branching groups B or B′, that the use of more than one orthogonal protecting groups may be necessary. Therefore, the requirements of the synthesis, taking into consideration that the lysine or other aforementioned related amino acid functions of the branching groups should be manipulated independently and selectively from others in the peptide, permits both aloc- and ivDde-protected residues to be employed in the same peptide or dimer construct to facilitate the selective manipulation of the amino groups of the amino acids in the branching groups B and B′. Thus, if, for example, one or more lysines are present in the sequence of peptide1 or peptide2, the ivDde or aloc group of the lysines in the branching groups B or B′ or the lysine residues within the sequence of the peptide1 or peptide2 may be removed with hydrazine (ivDde) or reductive methods which employ palladium-based reagents (aloc) at the appropriate juncture in the synthesis, in order to facilitate the selective manipulation of the various lysine residues in the individual peptides peptide1 and peptide2, or the dimer construct at any stage in its elaboration to the final product. The final product may be purified by SEC (size exclusion chromatography), reverse phase HPLC, ion exchange chromatography or other chromatographic techniques singly or in combination as needed. The advantageous use of orthogonal protection methodology is anticipated wherein more than one amino acid having side chain functions such as, e.g., carboxyl, thiol or hydroxyl groups or others mentioned in the descriptions of the branching groups B and B′ or even of the linker D functions, should be specifically manipulated in the presence of the others in the molecule.
Dimers including reporter-sp groups and their preparation are described throughout the disclosure herein, e.g., in Example 9,
18. Methods for Preparing Peptide Constructs Using Diamines as Linker D
In another embodiment of the present invention, D is a diamine linker.
The diamine linker D is preferably a diamine that joins spacer1 and spacer2 via amide bonds. The diamines employed as the diamine linker D can be of the form:
The diamine employed as diamine linker D may also be a substituted aromatic or heterocyclic diamine of the form NH2-Q-ZZ-Q′-NH2, where
Examples of such molecules include, without limitation, 4-aminomethylbenzylamine, 4-aminomethyl-4′-aminomethylbiphenyl, N-methylpyrrole-2,5-dicarboxylic acid bis 2-aminoethylamide, pyridine-2,6-dicarboxylic acid bis-2-aminoethylamide, N-methylpyrrole-2,3-dicarboxylic acid bis-2-aminoethylamide, N-methylpyrrole-2,4-dicarboxylic acid bis-2-aminoethylamide, pyridine 2,3-dicarboxylic acid bis-2-aminoethylamide, pyridine-3,5-dicarboxylic acid bis-2-aminoethylamide and pyridine 3,4-dicarboxylic acid bis-2-aminoethylamide (
Additional aromatic nuclei that may be employed as shown for those in
The saturated derivatives of the aromatic compounds described above, where ZZ is now a saturated derivative of the aromatic or heterocyclic ZZ, can also be employed as the diamine linker D with the same groups. Examples of the diamines, where ZZ is aliphatic that can comprise linker D, are shown in
In yet another embodiment, the diamine linker D may be derived from a D or L amino acid, or a D or L amino acid amide derived from lysine, ornithine or 2,3-diaminopropionic acid. These may be employed as described above as the diamine linker D. The alpha and side chain amino groups may be used to make the bonds from linker D to spacer1and spacer2 of the final dimer construct. The amino acid acyl group may be amidated by groups —N—R as described above for the aliphatic NH2-ZZ-Q′-NH2 linkers shown in
Dimers containing a diamine linker D are described in, e.g., Example 9 (D16) and
A preferred general synthetic method of preparing multivalent peptides of the invention in which a diamine linker D is used, is one in which peptide1 and peptide2, with their associated branching groups B and B′, can, in separate flasks, be coupled to excess amounts of bis-activated dicarboxylic acid spacers; for example, 3,6,9-trioxa-undecan-1,11-dicarboxylic acid bis N-succinimidyl ester (spacer1-C) and glutaric acid-bis-NHS ester (spacer2-E); providing, respectively, peptide1-branching group B-spacer1-NHS ester and peptide2-branching group B′-spacer2-NHS ester. The excess bis-NHS ester derivatives of these respective dicarboxylic acids can be washed off by precipitation of the peptide1 -branching group B-spacer1-mono-NHS ester and the peptide2-branching group B′-spacer2-mono-NHS ester with a suitable solvent such as, e.g., ether or ethyl acetate, which selectively solubilizes the bis-NHS esters of spacer1 and spacer2, allowing their removal by decanting the respective solutions. Peptide1-branching group B′-spacer1-NHS ester can then be dissolved in a suitable solvent such as, e.g., DMSO, NMP, DMF, or DMA, and this solution can be added to an excess (typically 5-100 fold excess) of a diamine linker D, such as 4,7,10-trioxatridecane-1,3-diamine, a preferred diamine linker, dissolved in an appropriate solvent such as, e.g., DMF or DMA, to provide peptide1-branching group B-spacer1-linker D monoamine. The remaining diamine linker D can be removed either by evaporation or by selective dissolution in a solvent, such as, e.g., ether or ethyl acetate. As described above, the addition of ether or ethyl acetate results in precipitation or sequestration of the peptide1-branching group B-spacer1-linker D-monoamine in a separate phase from that bearing the excess diamine linker D. Decanting the supernatant then removes the excess diamine linker D.
The excess diamine linker D may be removed by these two operations executed sequentially as well. It is also anticipated that the protocol may have to be repeated, possibly more than once, to remove all of the excess diamine linker D. The peptide1-branching group B-spacer1-linker D-monoamine can then be dissolved in a suitable solvent such as, e.g., DMSO, NMP, DMF or DMA, and reacted with peptide2-branching group B′-spacer2-mono-NHS ester in a stoichiometric amount to provide the assembled dimer, namely peptide1-branching group B-spacer1-linker D-spacer2-branching group B′-peptide2. The use of a stoichiometric amount of the reacting constituent monomeric peptide-branching group-spacer constructs and intervening intermediates is not mandatory, and it may be desirable to employ other than a stoichiometric amount of either of the reacting partners that result in the preparation of the desired heterodimeric peptide construct as outlined briefly following.
If desired, the amount of the second reacting partner, namely peptide2-branching group B′-spacer2-mono-NHS ester employed may optionally be either more or less than a stoichiometric amount. The optional variation of the amount employed is a function of the reactivity of the two compounds, the relative ease of separation of the desired product dimer from the starting peptide2-branching group B′-spacer2-mono-NHS ester (or its hydrolysis product the carboxylic acid congener) or the peptide1-branching group B-spacer1-linker D-monoamine construct and the availability of either of the constructs.
For example, if it is found that the construct peptide2-branching group B′-spacer2-mono-NHS ester is difficult to separate from the dimer reaction product, but not from peptide1-branching group B-spacer1-linker D-monoamine, then employing a limiting, substoichiometric amount of the construct peptide2-branching group B′-spacer2-mono-NHS ester is the best strategy to insure its complete consumption, thus obviating the problem of a difficult separation of this material from the product dimer. Those skilled in the art will recognize that such expedients as described above can be employed to optimize all phases of the preparation and purification of compounds. The entire sequence is illustrated in
19. The Flexible Nature of the Claimed Methods
The methods of the present invention are advantageous because of, e.g., their modular nature, their versatility and their ability to incorporate reporter-sp groups onto one or both ends of a molecule. Those skilled in the art will recognize that: (1) peptide1 and peptide2 may be the same peptide; (2) spacer1 and spacer2 may be the same spacer; (3) the combinations of the same peptides and different spacers or different peptides with the same spacers can be made; and finally that these possibilities are all contemplated and anticipated by the general description given above. Further, it is anticipated that employing ivDde, aloc, fmoc, boc, benzyloxycarbonyl, 2-chlorotrityl, 4-methyltrityl, trityl, tert-butyl, methyl, benzyl, t-butylthio, 2-thiopyridyl and other orthogonal protection methods for amino groups or other side chain protecting groups such as COOH, OH or SH, singly or in combination, on side chain containing amino acid residues making up the branching group B or the branching group B′ or on such residues as may be present in the sequences of peptide1 and or peptide2 as necessary, will allow the dimer construction method described herein to be extended to the construction of reporter-sp-functionalized dimers, wherein the reporter-sp may reside on nitrogen, oxygen or sulfur atoms of amino acids of the branching groups, the linker D or at the N-terminus of either peptide1 or peptide2, in essentially the same way as described above.
Those skilled in the art will further recognize that other chemical methods besides those described wholly or in part above can be employed for connecting the peptides, spacers and linkers in the course of their construction and the construction of the desired multivalent targeting constructs, heterodimers, heterodimeric constructs, heterotrimers, heterotetramers, heteromultimers and/or heteromultimeric constructs. These methods include, e.g., bond forming reactions such as formation of secondary amines by reductive amination using an amino group of a peptide, spacer or a linker and the aldehyde function of another peptide, a linker or a spacer. Similarly, the reporter-sp may be appended in the same manner. Other possible methods for bond forming reactions include, e.g., the formation of ureas by coupling an amino group of one of the peptides, branching groups, spacers, or the linker with the appropriate partner bearing an isocyanate function or a mixed urea prepared by treatment of an amino group of the other peptide, branching group, spacer or linker with carbonyldiimidazole, phosgene or phosgene surrogates such as diphosgene or triphosgene. Other linkages that may be formed include, e.g., dissulfide bonds, ethers, esters, carbamates, hydrazones, acylhydrazones, semicarbazones, thioamides or thioureas. Those skilled in the art will readily recognize that facilitating these different coupling strategies will necessarily involve changing the carboxylic acid or an amino group of one of the above partners to, e.g., an aldehyde, amine, alcohol, hydrazine, acylhydrazine, isothiocyanate, mercaptan, 2-pyridyldisulfide. Such changes in functional groups are required and expected by those skilled in the art.
This method of dimerization has excellent positional flexibility, and tolerates other linking groups. Provided herein are examples of N-terminus to N-terminus (N—N), C-terminus to N-terminus dimerization (C—N), N-terminus to C-terminus dimerization (N—C), and C-terminus to C-terminus dimerization (C—C). Although, in the example provided, dimerization at the C-terminus used the epsilon amine of lysine, it is also possible to couple a diamine at the C-terminyl carboxyl group and use the resulting amine in the dimerization protocol. By coupling other non-alpha-amino acids to the N-terminus amine or the epsilon amine of lysine, different lengths of linkers between the two peptides can be incorporated. Other functional groups compatible with this dimerization method can also. be appended to one or both peptides in order to optimize biological properties.
The methods of the present invention are remarkably flexible in providing dimerized peptides without esterification of tyrosine or threonine derivatives. Likewise, the guanidine group of argine is not acylated and the carboxylic acid groups of aspartic and glutamic acid are unaffected. Lysine groups can be selectively protected with the ivDde group to prevent acylation during dimer formation and later de-protected with hydrazine and, where necessary, used in further elaboration.
Cylic disulfide, other cyclic peptides, such as, e.g., cyclic lactam peptides, cyclic lactone peptides, all of the cyclic peptide types described as disulfide mimetics, linear peptides and all of the other types of monomer peptides and other monomer types such as, e.g., small molecules, peptidomimetics other than merely disulfide mimetics, can be employed to form heterodimers and even homodimers.
Those skilled in the art will also recognize that heterodimer (or homodimer) constructs with or without reporters can be prepared from all of the monomer types described in this disclosure. The following Table is illustrative of the combinations of monomers and the dimers that will result. The row directly below the Title in Table 1 lists the monomer types available for Peptide ‘A’ in a Peptide ‘A’ -Peptide ‘B’ heterodimer construct. The leftmost column lists the available monomer types for Peptide ‘B’ . The cells forming the intersection of the members of the topmost row and the leftmost column describe the types of heterodimer Peptide ‘A’ -Peptide ‘B’ or even the types of homodimers Peptide ‘A’ -Peptide ‘A’ or Peptide ‘B’ -Peptide ‘B’ that may be formed in terms of the constituent monomer types.
It is understood that as previously stated, “Peptide A” and “Peptide B” are broad terms that denote peptides with associated spacer(s) and reporter-sp molecules, and that the dimer formation may require the use of a linker function as well. In a preferred embodiment, Peptide A and Peptide B bind to different epitopes on a single target. In a more preferred embodiment, Peptide A and Peptide B bind to different epitopes on the KDR- or cMET-receptors.
The methods of the present invention allow preparation of homodimers and heterodimers, allow control of the position of linkage of both peptides, and also allow control of the hydrophilicity, length and rigidity of the linker, and hence optimization of, the physical and binding properties of the compounds. Further, the methods of the present invenion rely on acylation and provide the desired products irreversibly vs some chemical ligation approaches (cf above), and are compatible with protected and unprotected peptides.
By very minor modification of the monomer peptides and the overall approach, the methods of the present invention allow for positionally controlled incorporation of labeling groups such as fluorophores, biotin and metal chelators. Furthermore, the introduction of such groups can be controlled with respect to when they are incorporated—either before or after dimerization. These present methods form the basis of the preparation of high affinity homodimers and heterodimers with superior biological properties.
C. Uses of Heteromultimeric Constructs
Heteromultimeric constructs of the present invention can be used in a multitude of applications, including immunoassays (e.g., ELISA), as pharmaceuticals usefull for treatments of various diseases, as well as in in vivo diagnosis and therapy. For example, the heteromultimeric constructs described herein will be extremely useful for detection and/or imaging of target containing tissue in vitro or in vivo. For example, KDR- or VEGF/KDR complex-binding heteromultimeric constructs will be extremely useful for detection and/or imaging of KDR or VEGF/KDR complex-containing tissue, and particularly for detection and/or imaging of sites of angiogenesis, in which VEGF and KDR are intimately involved, as explained above. Any suitable method of assaying or imaging KDR or VEGF/KDR complex may be employed. Similarly, cMet or HGF/cMet complex-binding heteromultimeric constructs will be extremely useful for detection and/or imaging of cMet or HGF/cMet complex containing tissue, and particularly for detection and/or imaging tumors or other sites of hyperproliferation, in which HGF and cMet are intimately involved, as explained above. Any suitable method of assaying or imaging cMet or HGF/cMet complex may be employed.
The compounds of the invention also have utility in the treatment of a variety of disease states, whether used alone or in combination with another therapeutic agent. For example, as discussed, a compound of the invention that inhibits a biological process that contributes to a disease state may itself be used as a therapeutic or pharmaceutical composition. Alternatively (or in combination), a compound of the invention may include one or more additional therapeutic agents. In one embodiment, the invention includes heteromultimers including KDR- or VEGF/KDR complex-binding moieties which may themselves be used as therapeutics or may be used to localize one or more therapeutic agents (e.g., a chemotherapeutic, a radiotherapeutic, genetic material, etc.) to KDR-expressing cells, including sites of angiogenesis, or those associated with a number of pathogens. In another embodiment, the invention includes heteromultimers including cMet or HGF/cMet complex-binding moieties which may themselves be used as therapeutics or may be used to localize one or more therapeutic agents (e.g., a chemotherapeutic, a radiotherapeutic, genetic material, etc.) to cMet-expressing cells, including tumors, sites of hyperproliferation or sites of angiogenesis.
The heteromultimeric constructs of the present invention are particularly useful as therapeutic agents for treating conditions that involve endothelial cells. Because an important function of endothelial cells is angiogenesis (the formation of blood vessels), the heteromultimers of the invention are particularly useful for treating conditions that involve angiogenesis, which include, for example, solid tumors, tumor metastases and benign tumors. Such tumors and related disorders are well known in the art and include, for example, melanoma, central nervous system tumors, neuroendocrine tumors, sarcoma, multiple myeloma, cancer of the breast, lung, prostate, colon, head and neck, and ovary. Additional tumors and related disorders are listed in Table 1 of U.S. Pat. No. 6,025,331, issued Feb. 15, 2000 to Moses, et al., the teachings of which are incorporated herein by reference. Benign tumors include, for example, hemangiomas, acoustic neuromas, neurofibromas, trachomas, and pyogenic granulomas. Other relevant diseases that involve angiogenesis include for example, rheumatoid arthritis, psoriasis, and ocular disease, such as diabetic retinopathy, retinopathy of prematurity, macular degeneration, corneal graft rejection, neovascular glaucoma, retrolental fibroplasias, rebeosis, Osler-Webber syndrome, myocardial angiogenesis, plaque neovascularization, telangiectasia, hemophiliac joints, angiofibroma and wound granulation. Other relevant diseases or conditions that involve blood vessel growth include intestinal adhesions, atherosclerosis, scleroderma, and hypertropic scars, and ulcers. Furthermore, the heteromultimers of the present invention can be used to reduce or prevent uterine neovascularization required for embryo implantation, for example, as a birth control agent.
For detection of the target in solution, a heteromultimer according to the invention can be detectably labeled, e.g., fluorophore-labeled, enzymatically labeled, or labeled with a radionuclide or paramagnetic metal or attached to bubbles, then contacted with the solution, and thereafter formation of a complex between the heteromultimer and the target can be detected. As an example, a fluorophore-labeled KDR- or VEGF/KDR complex-binding heteromultimeric construct may be used for in vitro KDR or VEGF/KDR complex detection assays, wherein the heteromultimeric construct is added to a solution to be tested for KDR or VEGF/KDR complex under conditions allowing binding to occur. The complex between the fluorophore-labeled KDR- or VEGF/KDR complex-binding heteromultimer and KDR or VEGF/KDR complex target can be detected and quantified by measuring the increased fluorescence polarization arising from the KDR or VEGF/KDR complex-bound heteromultimer relative to that of the free heteromultimer. Heteromultimers comprising cMet binding moieties may be used similarly.
Alternatively, a sandwich-type “ELISA” assay may be used, wherein a heteromultimeric construct is immobilized on a solid support such as a plastic tube or well, then the solution suspected of containing the target is contacted with the immobilized heteromultimeric construct, non-binding materials are washed away, and complexed target is detected using a suitable detection reagent, such as a monoclonal antibody recognizing the target. The monoclonal antibody is detectable by conventional means known in the art, including being detectably labeled, e.g., radiolabeled, conjugated with an enzyme such as horseradish peroxidase and the like, or fluorophore-labeled.
For example, for detection or purification of soluble target in or from a solution, heteromultimers of the invention can be immobilized on a solid substrate such as a chromatographic support or other matrix material, then the immobilized heteromultimer can be loaded or contacted with the solution under conditions suitable for formation of a heteromultimer:target complex. The solution, which contains unbound target and non-binding substances, can be removed and the complex may be detected, e.g., using an antibody against the target, such as an anti-binding polypeptide antibody (e.g., anti-KDR, anti-VEGF/KDR complex, anti-cMet, or anti-cMet/HGF complex antibody), or the heteromultimer:target complex may be released from the binding moiety under appropriate elution conditions.
The biology of angiogenesis and the roles of VEGF and KDR in initiating and maintaining it have been investigated by many researchers, and this phenomenon continues to be an active field for research and development. A method of purifying bulk amounts of KDR or VEGF/KDR complex in pure form, in order to advance research and development, is desirable, and the KDR and VEGF/KDR complex heteromultimers described herein are especially useful for that purpose, using the general purification methodology described above.
1. Diagnostic Imaging
Appropriately labeled heteromultimeric constructs of the present invention may be used in in vivo diagnostic applications to image specific tissues or cellular disorders. A particularly preferred use for the heteromultimeric constructs according to the present invention is for creating visually readable images of tissues expressing or containing the biomolectular target. For this embodiment, the heteromultimers of the invention are conjugated with a label appropriate for diagnostic detection, optionally via an interposed linker. Suitable linkers can be substituted or unsubstituted alkyl chains, amino acid chains (e.g., polyglycine), polyethylene glycols, polyamides, and other simple oligomeric or polymeric linkers known in the art. One or more types of linker may be employed, singly or in combination, to form the actual linker structure. Preferably, a heteromultimer exhibiting much greater specificity for the target than for other serum proteins is conjugated or linked to a label appropriate for the detection methodology to be employed. For example, heteromultimers of the invention may be conjugated with or without a linker to a paramagnetic chelate suitable for magnetic resonance imaging (MRI), with a radiolabel suitable for x-ray, PET or scintigrapic imaging (including if necessary a chelator, such as those described herein, for a radioactive metal) with an ultrasound contrast agent (e.g., a stabilized microbubble, a microballoon, a microsphere or what has been referred to as a gas filled “liposome”) suitable for ultrasound detection, or with an optical imaging dye.
For example, KDR- or VEGF/KDR complex-binding heteromultimeric constructs of the invention or cMet- or HGF complex-binding heteromultimeric constructs of the invention may be used to image neoplastic tumors, which require angiogenesis for survival and metastasis, or other sites of angiogenic activity. In this embodiment, heteromultimeric constructs including KDR- and VEGF/KDR complex-binding polypeptides or cMet- or HGF/cMet complex-binding polypeptides are converted to imaging reagents by conjugation with a label appropriate for diagnostic detection, optionally via a linker, as described herein.
In general, the technique of using a detectably labeled heteromultimeric construct is based on the premise that the label generates a signal that is detectable outside the patient's body. For example, in one embodiment, when a detectably labeled heteromultimer of the invention is administered to the patient in which angiogenesis, e.g., due to a tumor, is occurring, the high affinity of the KDR- or VEGF/KDR complex-binding moieties included in the heteromultimeric constructs for KDR or VEGF/KDR complex causes the heteromultimeric construct to bind to the site of angiogenesis and accumulate label at the site of angiogenesis. Sufficient time is allowed for the labeled heteromultimeric construct to localize at the site of angiogenesis. The signal generated by the labeled peptide is detected by a scanning device which will vary according to the type of label used, and the signal is then converted to an image of the site of angiogenesis.
In another embodiment, rather than directly labeling a heteromultimer of the invention with a detectable label or radiotherapeutic construct, heteromultimers of the invention can be conjugated with for example, avidin, biotin, or an antibody or antibody fragment that will bind the detectable label or radiotherapeutic. For example, in one embodiment, heteromultimers can be conjugated to streptavidin or avidin for in vivo binding to target-containing or target-expressing cells. After the unbound heteromultimer has cleared from the body, a biotinylated detectable label or radiotherapeutic construct (e.g., a chelate molecule complexed with a radioactive metal) which will rapidly concentrate at the site where the targeting construct is bound, can be infused. In some situations, this approach can reduce the time required until imaging, after administering the detectable label, can take place. It can also increase the signal to noise ratio in the target site, and decrease the dose of the detectable label or radiotherapeutic construct required. This is particularly useful when a radioactive label or radiotherapeutic is used as the dose of radiation that is delivered to normal but radiation-sensitive sites in the body, such as bone-marrow, kidneys, and liver is decreased. This approach, sometimes referred to as pre-targeting or two-step, or three-step approaches was reviewed by Goodwin et al., (“Advances in pretargeting biotechnology”) Biotechnology Advances 19(6), 435-450 (2001), incorporated by reference herein; and Rosebrough, Q. J. Nucl. Med. 40:234-251 (1996), incorporated by reference herein. In a preferred embodiment, heteromultimeric constructs including KDR or VEGF/KDR-binding moieties are used. In another preferred embodiment, heteromultimeric constructs including cMet or HGF/cMet binding moieties are used.
2. Magnetic Resonance Imaging
The heteromultimers of the present invention may advantageously be conjugated with one or more paramagnetic metal chelates in order to form a contrast agent for use in MRI. Preferred paramagnetic metal ions have atomic numbers 21-29, 42, 44, or 57-83. This includes ions of the transition metal or lanthanide series which have one, and more preferably five or more, unpaired electrons and a magnetic moment of at least 1.7 Bohr magneton. Preferred paramagnetic metals include, but are not limited to, chromium (III), manganese (II), manganese (III), iron (II), iron (III), cobalt (II), nickel (II), copper (II), praseodymium (III), neodymium (III), samarium (III), gadolinium (III), terbium (III), dysprosium (III), holmium (III), erbium (III), europium (III) and ytterbium (III). Additionally, heteromultimers of the present invention may also be conjugated with one or more superparamagnetic particles.
Gd(III) is particularly preferred for MRI due to its high relaxivity and low toxicity, and the availability of only one biologically accessible oxidation state. Gd(III) chelates have been used for clinical and radiologic MR applications since 1988, and approximately 30% of MR exams currently employ a gadolinium-based contrast agent.
One skilled in the art will select a metal according to the dose required to detect target containing tisssue and considering other factors such as toxicity of the metal to the subject. See Tweedle et al., Magnetic Resonance Imaging (2nd ed.), vol. 1, pp. 796-97, Partain et al., eds. (W. B. Saunders Co. 1988). Generally, the desired dose for an individual metal will be proportional to its relaxivity, modified by the biodistribution, pharmacokinetics and metabolism of the metal. The trivalent cation, Gd3+ is particularly preferred for MRI contrast agents, due to its high relaxivity and low toxicity, with the further advantage that it exists in only one biologically accessible oxidation state, which minimizes undesired metabolization of the metal by a patient. Another useful metal is Cr3+, which is relatively inexpensive.
The paramagnetic metal chelator is a molecule having one or more polar groups that act as a ligand for, and complex with, a paramagnetic metal or metal ion. Suitable chelators are known in the art and include acids with methylene phosphonic acid groups, methylene hydroxamic acid groups, carboxyethylidene groups, or carboxymethylene groups. Examples of chelators include, but are not limited to, diethylenetriamine pentaacetic acid (DTPA), 1,4,7,10-tetraazacyclotetradecane-1,4,7,10-tetraacetic acid (DOTA), 1-substituted 1,4,7,-tricarboxymethyl 1,4,7,10 teraazacyclododecane triacetic acid (DO3A), ethylenediaminetetraacetic acid (EDTA), and 1,4,8,11-tetraazacyclotetradecane-1,4,8,11-tetraacetic acid (TETA). Additional chelating ligands are ethylenebis-(2-hydroxy-phenylglycine) (EHPG), and derivatives thereof, including 5-Cl-EHPG, 5-Br-EHPG, 5-Me-EHPG, 5-t-Bu-EHPG, and 5-sec-Bu-EHPG; benzodiethylenetriamine pentaacetic acid (benzo-DTPA) and derivatives thereof, including dibenzo-DTPA, phenyl-DTPA, diphenyl-DTPA, benzyl-DTPA, and dibenzyl DTPA, bis-2 (hydroxybenzyl)-ethylene-diaminediacetic acid (HBED) and derivatives thereof; the class of macrocyclic compounds which contain at least 3 carbon atoms, more preferably at least 6, and at least two heteroatoms (O and/or N), which macrocyclic compounds can consist of one ring, or two or three rings joined together at the hetero ring elements, e.g., benzo-DOTA, dibenzo-DOTA, and benzo-NOTA, where NOTA is 1,4,7-triazacyclononane N,N′,N″-triacetic acid, benzo-TETA, benzo-DOTMA, where DOTMA is 1,4,7,10-tetraazacyclotetradecane-1,4,7,10-tetra(methyl tetraacetic acid), and benzo-TETMA, where TETMA is 1,4,8,11-tetraazacyclotetradecane-1,4,8,11-(methyl tetraacetic acid); derivatives of 1,3-propylenediaminetetraacetic acid (PDTA) and triethylenetetraaminehexaacetic acid (TTHA); derivatives of 1,5,10-N,N′,N″-tris(2,3-dihydroxybenzoyl)-tricatecholate (LICAM) and 1,3,5-N,N′,N″-tris(2,3-dihydroxybenzoyl) aminomethylbenzene (MECAM). A preferred chelator for use in the present invention is DTPA. Examples of representative chelators and chelating groups contemplated by the present invention are described in WO 98/18496, WO 86/06605, WO 91/03200, WO 95/28179, WO 96/23526, WO 97/36619, PCT/US98/01473, PCT/US98/20182, and U.S. Pat. No. 4,899,755, U.S. Pat. No. 5,474,756, U.S. Pat. No. 5,846,519 and U.S. Pat. No. 6,143,274, each of which is hereby incorporated by reference in its entirety. Use of the chelate DO3A is particularly preferred.
In one embodiment of the present invention, the chelator(s) of the MRI contrast agent is coupled to a heteromultimer, such as, for example one comprised of KDR- or VEGF/KDR complex-binding polypeptides or cMet- or HGF/cMet complex-binding polypeptides. The positioning of the chelate(s) should be selected so as not to interfere with the binding affinity or specificity of the heteromultimeric construct. Preferably, the chelate(s) will be appended either to the N-terminus or the C-terminus, however the chelate(s) may also be attached anywhere within the sequence. In preferred embodiments, a chelator having a free central carboxylic acid group (e.g., DTPA-Asp(β—COOH)-13 O-t-Bu) makes it easy to attach the chelators to the N-terminus of a binding peptide by forming an amide bond. The chelate(s) could also be attached at the C-terminus with the aid of a linker. Alternatively, isothiocyante conjugation chemistry could be employed as a way of linking the appropriate isothiocyante group bearing DTPA to a free amino group anywhere within the peptide sequence.
For example, the heteromultimer can be bound directly or covalently to the metal chelator(s) (or other detectable label), or it may be coupled or conjugated to the metal chelator(s) using a linker, which may be, without limitation, amide, urea, acetal, ketal, double ester, carbonyl, carbamate, thiourea, sulfone, thioester, ester, ether, disulfide, lactone, imine, phosphoryl, or phosphodiester linkages; substituted or unsubstituted saturated or unsaturated alkyl chains; linear, branched, or cyclic amino acid chains of a single amino acid or different amino acids (e.g., extensions of the N- or C- terminus of the binding moieties); derivatized or underivatized polyethylene glycol, polyoxyethylene, or polyvinylpyridine chains; substituted or unsubstituted polyamide chains; derivatized or underivatized polyamine, polyester, polyethylenimine, polyacrylate, poly(vinyl alcohol), polyglycerol, or oligosaccharide (e.g., dextran) chains; alternating block copolymers; malonic, succinic, glutaric, adipic and pimelic acids; caproic acid; simple diamines and dialcohols; any of the other linkers disclosed herein; or any other simple polymeric linkers known in the art (see, e.g., WO 98/18497, WO 98/18496). Preferably the molecular weight of the linker can be tightly controlled. The molecular weights can range in size from less than 100 to greater than 1000. Preferably the molecular weight of the linker is less than 300. In addition, it may be desirable to utilize a linker that is biodegradable in vivo to provide efficient routes of excretion for the imaging reagents of the present invention. Depending on their location within the linker, such biodegradable functionalities can include ester, double ester, amide, phosphoester, ether, acetal, and ketal functionalities.
In general, known methods can be used to couple the metal chelate and a heteromultimer of the invention using such linkers. See, e.g., WO 95/28967, WO 98/18496, WO 98/18497 and the methods discussed above. For example, a heteromultimer can be linked through the N- or C-terminus of a component-binding moiety via an amide bond, for example, to a metal coordinating backbone nitrogen of a metal chelate or to an acetate arm of the metal chelate itself. The present invention contemplates linking of the chelate(s) on any position, provided the metal chelate retains the ability to bind the metal tightly in order to minimize toxicity. Similarly, a component-binding moiety of a heteromultimer may be modified or elongated in order to generate a locus for attachment to a metal chelate, provided such modification or elongation does not eliminate its ability to bind the target.
MRI contrast reagents prepared according to the disclosures herein may be used in the same manner as conventional MRI contrast reagents. When imaging target containing tissue such as, for example, a site of angiogenesis, certain MR techniques and pulse sequences may be preferred to enhance the contrast of the site to the background blood and tissues. These techniques include (but are not limited to), for example, black blood angiography sequences that seek to make blood dark, such as fast spin echo sequences (see, e.g., Alexander et al., Magnetic Resonance in Medicine, 40(2): 298-310 (1998)) and flow-spoiled gradient echo sequences (see, e.g., Edelman et al., Radiology, 177(1): 45-50 (1990)). These methods also include flow independent techniques that enhance the difference in contrast, such as inversion-recovery prepared or saturation-recovery prepared sequences that will increase the contrast between target containing tissue, such as an angiogenic tumor, and background tissues. Finally, magnetization transfer preparations may also improve contrast with these agents (see, e.g., Goodrich et al., Investigative Radiology, 31(6): 323-32 (1996)).
The labeled reagent is administered to the patient in the form of an injectable composition. The method of administering the MRI contrast agent is preferably parenterally, meaning intravenously, intraarterially, intrathecally, interstitially, or intracavitarilly. For imaging active angiogenesis, intravenous or intraarterial administration is preferred. For MRI, it is contemplated that the subject will receive a dosage of contrast agent sufficient to enhance the MR signal at the target (e.g., a site of angiogenesis) at least 10%. After injection of the heteromultimeric construct including the MRI reagent, the patient is scanned in the MRI machine to determine the location of any sites containing the target. In therapeutic settings, upon target localization, a cytotoxic or therapeutic agent can be immediately administered, if necessary, and the patient can be subsequently scanned to visualize the therapeutic effect.
In a preferred embodiment, heteromultimers including KDR- or VEGF/KDR complex-binding moieties are conjugated to one or more paramagnetic metal chelates or one or more superparamagnetic particles, optionally via a linker. In another preferred embodiment, heteromultimeric constructs including cMet or HGF/cMet complex-binding moieties are used. Such heteromultimeric constructs are complexed with one or more paramagnetic metal and adminitered in a dose sufficient to enhance the MR signal at the site of angiogenesis at least 10%. After injection, the patient is scanned to determine the location of any sites of angiogenesis (e.g., angiogenic tumors, etc.) or hyperproliferative tissue. If necessary, upon location of an angiogenic or hyperproliferative site, an anti-angiogenic or tumoricidal agent, such as, for example, an inhibitor of VEGF (or VEGF activation of KDR) may be administered. If necessary, the patient may be scanned again to visualize/track the tumor regression, arrest of angiogenesis, etc.
3. Ultrasound Imaging
When ultrasound is transmitted through a substance, the acoustic properties of the substance will depend upon the velocity of the transmissions and the density of the substance. Changes in the acoustic properties will be most prominent at the interface of different substances (solids, liquids, gases). Ultrasound contrast agents are intense sound wave reflectors because of the acoustic differences between the agent and the surrounding tissue. Gas-containing or gas-generating ultrasound contrast agents are particularly useful because of the acoustic difference between liquid (e.g., blood) and the gas-containing or gas-generating ultrasound contrast agent. Because of their size, ultrasound contrast agents comprising microbubbles, microballoons, and the like, may remain for a longer time in the blood stream after injection than other detectable moieties; thus a targeted ultrasound agent may demonsrate superior imaging of tissue expressing or containing the target.
In this aspect of the invention, the heteromultimeric constructs may include a material that is useful for ultrasound imaging. For example, heteromultimers of the invention may be linked to materials employed to form vesicles (e.g., microbubbles, microballoons, microspheres, etc.), or emulsions containing a liquid or gas which functions as the detectable label (e.g., an echogenic gas or material capable of generating an echogenic gas). Materials for the preparation of such vesicles include surfactants, lipids, sphingolipids, oligolipids, phospholipids, proteins, polypeptides, carbohydrates, and synthetic or natural polymeric materials. See, e.g., WO 98/53857, WO 98/18498, WO 98/18495, WO 98/18497, WO 98/18496, and WO 98/18501 incorporated herein by reference in their entirety.
For contrast agents comprising suspensions of stabilized microbubbles (a preferred embodiment), phospholipids, and particularly saturated phospholipids are preferred. The preferred gas-filled microbubbles can be prepared by means known in the art, such as, for example, by a method described in any one of the following patents: EP 554213, U.S. Pat. No. 5,413,774, U.S. Pat. No. 5,578,292, EP 744962, EP 682530, U.S. Pat. No. 5,556,610, U.S. Pat. No. 5,846,518, U.S. Pat. No. 6,183,725, EP 474833, U.S. Pat. No. 5,271,928, U.S. Pat. No. 5,380,519, U.S. Pat. No. 5,531,980, U.S. Pat. No. 5,567,414, U.S. Pat. No. 5,658,551, U.S. Pat. No. 5,643,553, U.S. Pat. No. 5,911,972, U.S. Pat. No. 6,110,443, U.S. Pat. No. 6,136,293, EP 619743, U.S. Pat. No. 5,445,813, U.S. Pat. No. 5,597,549, U.S. Pat. No. 5,686,060, U.S. Pat. No. 6,187,288, and U.S. Pat. No. 5,908,610, each of which is incorporated by reference herein in its entirety. In a preferred embodiment, at least one of the phospholipid moieties has the structure of formula 18 or formula 19 shown below, where n=4 and n=m, and which is described in U.S. Pat. No. 5,686,060, which is herein incorporated by reference in its entirety.
Examples of suitable phospholipids include esters of glycerol with one or two molecules of fatty acids (the same or different) and phosphoric acid, wherein the phosphoric acid residue is in turn bonded to a hydrophilic group, such as choline, serine, inositol, glycerol, ethanolamine, and the like groups. Fatty acids present in the phospholipids are in general long chain aliphatic acids, typically containing from 12 to 24 (m and/or n=1-12) carbon atoms, preferably from 14 to 22 (m and/or n=3-10), that may be saturated or may contain one or more unsaturations. Examples of suitable fatty acids are lauric acid, myristic. acid, palmitic acid, stearic acid, arachidic acid, behenic acid, oleic acid, linoleic acid, and linolenic acid. Mono esters of phospholipid are also known in the art as the “lyso” forms of the phospholipids.
Further examples of phospholipids are phosphatidic acids, i.e., the diesters of glycerol-phosphoric acid with fatty acids, sphingomyelins, i.e., those phosphatidylcholine analogs where the residue of glycerol diester with fatty acids is replaced by a ceramide chain, cardiolipins, i.e., the esters of 1,3-diphosphatidylglycerol with a fatty acid, gangliosides, cerebrosides, etc.
As used herein, the term “phospholipids” includes either naturally occurring, semisynthetic or synthetically prepared products that can be employed either singularly or as mixtures.
Examples of naturally occurring phospholipids are natural lecithins (phosphatidylcholine (PC) derivatives) such as, typically, soya bean or egg yolk lecithins.
Examples of semisynthetic phospholipids are the partially or fully hydrogenated derivatives of the naturally occurring lecithins.
Examples of synthetic phospholipids are e.g., dilauryloyl-phosphatidylcholine (“DLPC”), dimyristoylphosphatidylcholine (“DMPC”), dipalmitoyl-phosphatidylcholine (“DPPC”), diarachidoylphosphatidylcholine (“DAPC”), distearoyl-phosphatidylcholine (“DSPC”), 1-myristoyl-2-palmitoylphosphatidylcholine (“MPPC”), 1-palmitoyl-2-myristoylphosphatidylcholine (“PMPC”), 1-palmitoyl-2-stearoylphosphatid-ylcholine (“PSPC”), 1-stearoyl-2-palmitoyl-phosphatidylcholine (“SPPC”), dioleoylphosphatidylycholine (“DOPC”), 1,2 distearoyl-sn-glycero-3-ethylphosphocholine (Ethyl-DSPC), dilauryloyl-phosphatidylglycerol (“DLPG”) and its alkali metal salts, diarachidoylphosphatidylglycerol (“DAPG”) and its alkali metal salts, dimyristoylphosphatidylglycerol (“DMPG”) and its alkali metal salts, dipalmitoyl-phosphatidylglycerol (“DPPG”) and its alkali metal salts, distearoylphosphatidylglycerol (“DSPG”) and its alkali metal salts, dioleoylphosphatidylglycerol (“DOPG”) and its alkali metal salts, dimyristoyl phosphatidic acid (“DMPA”) and its alkali metal salts, dipalmitoyl phosphatidic acid (“DPPA”) and its alkali metal salts, distearoyl phosphatidic acid (“DSPA”), diarachidoyl phosphatidic acid (“DAPA”) and its alkali metal salts, dimyristoyl phosphatidyl-ethanolamine (“DMPE”), dipalmitoyl phosphatidylethanolamine (“DPPE”), distearoyl phosphatidyl-ethanolamine (“DSPE”), dimyristoyl phosphatidylserine (“DMPS”), diarachidoyl phosphatidylserine (“DAPS”), dipalmitoyl phosphatidylserine (“DPPS”), distearoylphosphatidylserine (“DSPS”), dioleoylphosphatidylserine (“DOPS”), dipalmitoyl sphingomyelin (“DPSP”), and distearoyl sphingomyelin (“DSSP”).
Other preferred phospholipids include dipalmitoylphosphatidylcholine, dipalmitoylphosphatidic acid and dipalmitoylphosphatidylserine. The compositions may also contain PEG-4000 and/or palmitic acid. Any of the gases disclosed herein or known to the skilled artisan may be employed; however, inert gases, such as SF6, or fluorocarbons, such as CF4, C3F8 and C4F10, are preferred.
The preferred microbubble suspensions may be prepared from phospholipids using known processes such as a freeze-drying or spray-drying solutions of the crude phospholipids in a suitable solvent or using the processes set forth in EP 554213, U.S. Pat. No. 5,413,774, U.S. Pat. No. 5,578,292, EP 744962, EP 682530, U.S. Pat. No. 5,556,610, U.S. Pat. No. 5,846,518, U.S. Pat. No. 6,183,725, EP 474833, U.S. Pat. No. 5,271,928, U.S. Pat. No. 5,380,519, U.S. Pat. No. 5,531,980, U.S. Pat. No. 5,567,414, U.S. Pat. No. 5,658,551, U.S. Pat. No. 5,643,553, U.S. Pat. No. 5,911,972, U.S. Pat. No. 6,110,443, U.S. Pat. No. 6,136,293, EP 619743, U.S. Pat. No. 5,445,813, U.S. Pat. No. 5,597,549, U.S. Pat. No. 5,686,060, U.S. Pat. No. 6,187,288, and U.S. Pat No. 5,908,610, each of which is incorporated by reference herein in its entirety. Most preferably, the phospholipids are dissolved in an organic solvent and the solution is dried without going through a liposome formation stage. This can be done by dissolving the phospholipids in a suitable organic solvent together with a hydrophilic stabilizer substance or a compound soluble both in the organic solvent and water and freeze-drying or spray-drying the solution. In this embodiment the criteria used for selection of the hydrophilic stabilizer is its solubility in the organic solvent of choice. Examples of hydrophilic stabilizer compounds soluble in water and the organic solvent are e.g., a polymer, like polyvinyl pyrrolidone (PVP), polyvinyl alcohol (PVA), polyethylene glycol (PEG), etc., malic acid, glycolic acid, maltol and the like. Such hydrophilic compounds also aid in homogenizing the microbubbles size distribution and enhance stability under storage. Any suitable organic solvent may be used as long as its boiling point is sufficiently low and its melting point is sufficiently high to facilitate subsequent drying by spray drying, freeze-drying (lyophilization) or other drying techniques known to those of ordinary skill in the art. Typical organic solvents include, for example, dioxane, cyclohexanol, tertiarybutanol, tetrachlorodifluoro ethylene (C2Cl4F2) or 2-methyl-2-butanol; however, 2-methyl-2-butanol and C2Cl4F2 are preferred.
Prior to formation of the suspension of microbubbles by dispersion in an aqueous carrier, the freeze-dried or spray-dried phospholipid powders are contacted with air or another gas. When contacted with the aqueous carrier, the powdered phospholipid whose structure has been disrupted will form lamellarized or laminarized segments that will stabilize the microbubbles of the gas dispersed therein. This method permits production of suspensions of microbubbles that are stable even when stored for prolonged periods and are obtained by simple dissolution of the dried laminarized phospholipids (which have been stored under a desired gas) without shaking or any violent agitation.
Alternatively, microbubbles can be prepared by suspending a gas into an aqueous solution at high agitation speed, as disclosed in e.g., WO 97/29783. A further process for preparing microbubbles is disclosed in co-pending European patent application no. 03002373, herein incorporated by reference, which comprises preparing an emulsion of an organic solvent in an aqueous medium in the presence of a phospholipid and subsequently lyophilizing said emulsion, after optional washing and/or filtration steps.
Additives known to those of ordinary skill in the art can be included in the suspensions of stabilized microbubbles. For instance, non-film forming surfactants, including polyoxypropylene glycol and polyoxyethylene glycol and similar compounds, as well as various copolymers thereof; fatty acids such as myristic acid, palmitic acid, stearic acid, arachidic acid or their derivatives, ergosterol, phytosterol, sitosterol, lanosterol, tocopherol, propyl gallate, ascorbyl palmitate and butylated hydroxytoluene may be added. The amount of these non-film forming surfactants is usually up to 50% by weight of the total amount of surfactants but preferably between 0 and 30% by weight.
Other gas-containing suspensions include those disclosed in, for example, U.S. Pat. No. 5,798,091 and WO 97/29783, incorporated herein by reference in their entirety. These agents may be prepared as described in U.S. Pat. No. 5,798,091 or WO 97/29783, each of which is incorporated by reference in its entirety.
Another preferred ultrasound contrast agent comprises microballoons. The term “microballoon” refers to gas-filled bodies with a material boundary or envelope. More information on microballoon formulations and methods of preparation may be found in, e.g., EP-A-0 324 938 U.S. Pat. No. 4,844,882; U.S. Pat. No. 5,711,933; U.S. Pat. No. 5,840,275; U.S. Pat. No. 5,863,520; U.S. Pat. No. 6,123,922; U.S. Pat. No. 6,200,548; U.S. Pat. No. 4,900,540; U.S. Pat. No. 5,123,414; U.S. Pat. No. 5,230,882; 5,469,854; 5,585,112; U.S. Pat. No. 4,718,433; U.S. Pat. No. 4774,958; WO 9501187; U.S. Pat. No. 5,529,766; U.S. Pat. No. 5,536,490 and U.S. Pat. No. 5,990,263, each of which is incorporated herein by reference in its entirety.
The preferred microballoons have an envelope including a biodegradable physiologically compatible polymer or a biodegradable solid lipid. The polymers useful for the preparation of the microballoons of the present invention can be selected from the biodegradable physiologically compatible polymers, such as any of those described in any of the following patents: EP 458745, U.S. Pat. No. 5,711,933, U.S. Pat. No. 5,840,275, EP 554213, U.S. Pat. No. 5,413,774 and U.S. Pat. No. 5,578,292, the entire contents of which are incorporated herein by reference. In particular, the polymer can be selected from biodegradable physiologically compatible polymers, such as polysaccharides of low water solubility, polylactides and polyglycolides and their copolymers, copolymers of lactides and lactones such as ε-caprolactone, γ-valerolactone and polypeptides. Other suitable polymers include poly(ortho)esters (see, e.g., U.S. Pat. No. 4,093,709; U.S. Pat. No. 4,131,648; U.S. Pat. No. 4,138,344; U.S. Pat. No. 4,180,646); polylactic and polyglycolic acid and their copolymers, for instance DEXON (see J. Heller, Biomaterials 1 (1980), 51; poly(DL-lactide-co-ε-caprolactone), poly(DL-lactide-co-γ-valerolactone), poly(DL-lactide-co-γ-butyrolactone), polyalkylcyanoacrylates; polyamides, polyhydroxybutyrate; poly-dioxanone; poly-β-aminoketones (A. S. Angeloni, P. Ferruti, M. Tramontini and M. Casolaro, The Mannich bases in polymer synthesis: 3. Reduction of poly(beta-aminoketone)s to poly(gamma-aminoalcohol)s and their N-alkylation to poly(gamma-hydroxyquaternary ammonium salt)s, Polymer 23, pp 1693-1697 (1982)); polyphosphazenes (Allcock, Harry R., Polyphosphazenes: new polymers with inorganic backbone atoms (Science 193(4259), 1214-19 (1976)) and polyanhydrides. The microballoons of the present invention can also be prepared according to the methods of WO-A-96/15815, incorporated herein by reference, where the microballoons are made from a biodegradable membrane comprising biodegradable lipids, preferably selected from mono- di-, tri-glycerides, fatty acids, sterols, waxes and mixtures thereof. Preferred lipids are di- or tri-glycerides, e.g. di- or tri-myristin, -palmityn or -stearin, in particular tripalmitin or tristearin.
The microballoons may .employ any of the gases disclosed herein or known to the skilled artisan; however, inert gases such as fluorinated gases are preferred. The microballoons may be suspended in a pharmaceutically acceptable liquid carrier with optional additives known to those of ordinary skill in the art and stabilizers.
Other gas-containing contrast agent formulations include microparticles (especially aggregates of microparticles) having gas contained therein or otherwise associated therewith (foe example being adsorbed on the surface thereof and/or contained within voids, cavities or pores therein). Methods for the preparation of these agents are as described in EP 0122624, EP 0123235, EP 0365467, U.S. Pat. No. 5,558,857, U.S. Pat. No. 5,607,661, U.S. Pat. No. 5,637,289, U.S. Pat. No. 5,558,856, U.S. Pat. No. 5,137,928, WO 9521631 and WO 9313809, each of which is incorporated herein by reference in its entirety.
Any of these ultrasound compositions should also be, as far as possible, isotonic with blood. Hence, before injection, small amounts of isotonic agents may be added to any of above ultrasound contrast agent suspensions. The isotonic agents are physiological solutions commonly used in medicine and they comprise aqueous saline solution (0.9% NaCl), 2.6% glycerol solution, 5% dextrose solution, etc. Additionally, the ultrasound compositions may include standard pharmaceutically acceptable additives, including, for example, emulsifying agents, viscosity modifiers, cryoprotectants, lyoprotectants, bulking agents etc.
Any biocompatible gas may be used in the ultrasound contrast agents useful in the invention. The term “gas” as used herein includes any substances (including mixtures) substantially in gaseous form at the normal human body temperature. The gas may thus include, for example, air; nitrogen; oxygen; CO2; argon; xenon or krypton, fluorinated gases (including for example, perfluorocarbons, SF6, SeF6) a low molecular weight hydrocarbon (e.g., containing from 1 to 7 carbon atoms), for example, an alkane such as methane, ethane, propane, butane or pentane, a cycloalkane such as cyclopropane, cyclobutane or cyclopentene, an alkene such as ethylene, propene, propadiene or butene, or an alkyne such as acetylene or propyne and/or mixtures thereof. However, fluorinated gases are preferred. Fluorinated gases include materials which contain at least one fluorine atom. Examples include, but are not limited to compounds such as SF6, freons (organic compounds containing one or more carbon atoms and fluorine, i.e. CF4, C2F6, C3F8, C4F8, C4F10 , CBrF3, CCI2F2, C2CIF5, and CBrCIF2) and perfluorocarbons. The term “perfluorocarbon” refers to compounds containing only carbon and fluorine atoms. Such compounds include saturated, unsaturated, and cyclic perfluorocarbons. The saturated perfluorocarbons, which are preferred, have the formula CnFn+2, where n is from 1 to 12, preferably from 2 to 10, more preferably from 3 to 8 and most preferably from 3 to 6. Suitable perfluorocarbons include, but are not. limited to, CF4, C2F6, C3F8, C4F8, C4F10, C5F12, C6F12, C7F14, C8F18 and C9F20. Most preferably, the gas or gas mixture comprises SF6 or a perfluorocarbon selected from the group consisting of C3F8, C4F8, C4F10, C5F12, C6F12, C7F14, C8F18, with C4F10 being particularly preferred. See also WO 97/29783, WO 98/53857, WO 98/18498, WO 98/18495, WO 98/18496, WO 98/18497, WO 98/18501,WO 98/05364 and WO 98/17324, the contents of which are incorporated herein in their entirety.
In certain circumstances it may be desirable to include a precursor to a gaseous substance (e.g., a material that is capable of being converted to a gas in vivo, often referred to as a “gas precursor”). Preferably, the gas precursor and the gas it produces are physiologically acceptable. The gas precursor may be pH-activated, photo-activated, temperature-activated, etc. For example, certain perfluorocarbons may be used as temperature-activated gas precursors. These perfluorocarbons, such as, e.g., perfluoropentane, have a liquid/gas phase transition temperature above room temperature (or the temperature at which the agents are produced and/or stored) but below body temperature; thus, they undergo a phase shift and are converted to a gas within the human body.
As discussed before, the gas can include a mixture of gases. The following combinations are particularly preferred gas mixtures: a mixture of gases (A) and (B) in which, at least one of the gases (B), present in an amount of between 0.5 and 41% by vol., has a molecular weight greater than 80 daltons and is a fluorinated gas, and (A) is selected from the group consisting of air, oxygen, nitrogen, carbon dioxide and mixtures thereof, the balance of the mixture being gas A.
Since ultrasound vesicles may be larger than the other detectable labels described herein, they may be linked or conjugated to a plurality of heteromultimeric constructs in order to increase the targeting efficiency of the agent. Attachment to the ultrasound contrast agents described above (or known to those skilled in the art) may be done via direct covalent bond between a binding polypeptide and the material used to make the vesicle or via a linker, as described previously. For example, see generally WO 98/53857 for a description of the attachment of a peptide to a bifunctional PEG linker, which is then reacted with a liposome composition. See also Lanza et al., Ultrasound in Med. & Bio., 23(6): 863-870 (1997).
A number of methods may be used to prepare suspensions of microbubbles conjugated to heteromultimers. For example, one may prepare maleimide-derivatized microbubbles by incorporating 5% (w/w) of N-MPB-PE (1,2-dipalmitoyl-sn-glycero-3-phosphoethanolamine-4-(p-maleimido-phenyl butyramide), (Avanti Polar-Lipids, Inc) in the phospholipid formulation. Solutions of mercaptoacetylated heteromultimers (10 mg/mL in DMF), which have been incubated in deacetylation solution (50 mM sodium phosphate, 25 mM EDTA, 0.5 M hydroxylamine HCl, pH 7.5) are then added to the maleimide-activated microbubble suspension. After incubation in the dark, under gentle agitation, the heteromultimer conjugated microbubbles may be purified by centrifugation.
Compounds that can be used for derivatization of microbubbles typically include the following components: (a) a hydrophobic portion, compatible with the material forming the envelope of the microbubble or of the microballoon, in order to allow an effective incorporation of the compound in the envelope of the vesicle; said portion typically represented by a lipid moiety (e.g., dipalmitin, distearoyl); and (b) a spacer (typically PEGs of different molecular weights), which are optional in some cases (microbubbles may, for instance, be difficult to freeze dry if the spacer is too long), or preferred in some others (e.g., peptides may be less active when conjugated to a microballoon with short spacers); and (c) a reactive group capable of reacting with a corresponding reacting moiety on the peptide to be conjugated (e.g., maleimido with the —SH group of cysteine).
Alternatively, heteromultimers conjugated to microbubbles may be prepared using the biotin/avidin system. For example, avidin-conjugated microbubbles may be prepared using a maleimide-activated phospholipid microbubble suspension, prepared as described above, which is added to mercaptoacetylated-avidin (which has been incubated with deacetylation solution). Biotinylated heteromultimers (prepared as described herein), are then added to the suspension of avidin-conjugated microbubbles, yielding a suspension of microbubbles conjugated to the heteromultimers.
Unless it contains a hyperpolarized gas (which is known to require special storage conditions), the lyophilized residue may be stored and transported without the need for temperature control of its environment; in particular it may be supplied to hospitals and physicians for on-site formulation into a ready-to-use administrable suspension without requiring such users to have special storage facilities. Preferably in such a case it can be supplied in the form of a two-component kit, which can include two separate containers or a dual-chamber container. In the former case, preferably the container is a conventional septum-sealed vial, wherein the vial containing the lyophilized residue of step b) is sealed with a septum through which the carrier liquid may be injected using an optionally prefilled syringe. In such a case, the syringe used as the container of the second component is also used then for injecting the contrast agent. In the latter case, preferably the dual-chamber container is a dual-chamber syringe, and once the lyophilizate has been reconstituted and then suitably mixed or gently shaken, the container can be used directly for injecting the contrast agent. In both cases, means for directing or permitting application of sufficient bubble forming energy into the contents of the container are provided. However, as noted above, in the stabilized contrast agents according to the present invention, the size of the gas microbubbles is substantially independent of the amount of agitation energy applied to the reconstituted dried product. Accordingly, no more than gentle hand shaking is generally required to give reproducible products with consistent microbubble size.
It can be appreciated by one of ordinary skilled in the art that other two-chamber reconstitution systems capable of combining the dried powder with the aqueous solution in a sterile manner are also within the scope of the present invention. In such systems, it is particularly advantageous if the aqueous phase can be interposed between the water-insoluble gas and the environment, to increase shelf life of the product. Where a material necessary for forming the contrast agent is not already present in the container (e.g., a targeting ligand to be linked to the phospholipid during reconstitution), it can be packaged with the other components of the kit, preferably in a form or container adapted to facilitate ready combination with the other components of the kit.
No specific containers, vial or connection systems are required; the present invention may use conventional containers, vials and adapters. The only requirement is a good seal between the stopper and the container. The quality of the seal, therefore, becomes a matter of primary concern; any degradation of seal integrity may allow undesirable substances to enter the vial. In addition to assuring sterility, vacuum retention is essential for products stoppered at ambient or reduced pressures to assure safe and proper reconstitution. As for the stopper, it may be a compound or multicomponent formulation based on an elastomer, such as, e.g., poly(isobutylene) or butyl rubber.
Ultrasound imaging techniques that may be used in accordance with the present invention include known techniques, such as color Doppler, power Doppler, Doppler amplitude, stimulated acoustic imaging, and two- or three-dimensional imaging techniques. Imaging may be done in harmonic (resonant frequency) or fundamental modes, with the second harmonic preferred.
In ultrasound applications, the contrast agents formed by phospholipid stabilized microbubbles may, for example, be administered in doses such that the amount of phospholipid injected is in the range 0.1 to 200 μg/kg body weight, preferably from about 0.1 to 30 μg/kg body weight. Microballoon-containing contrast agents are typically administered in doses such that the amount of wall-forming polymer or lipid is from about 10 μg/kg to about 20 mg/kg, of body weight.
In a preferred embodiment, the ultrasound contrast agents described herein are conjugated to one or more heteromultimers comprising KDR- or VEGF/KDR complex-binding moieties, and target tissue expressing KDR. As shown in the Examples, these targeted ultrasound contrast agents will localize at sites of angiogenesis and other tissue expressing KDR and may demonstrate superior imaging of angiogenic tissue. In another preferred embodiment illustrated in the Examples, the ultrasound contrast agents described herein are conjugated to one or more heteromultimers comprising or cMet- or HGF/cMet complex-binding moieties, and, target tissue expressing cMet. These targeted ultrasound contrast agents will localize at sites of hyperproliferation or angiogenesis (including tumors) and other tissue expressing cMet, and demonstrate superior imaging of such tissue.
4. Optical Imaging, Sonoluminescence or Photoacoustic Imaging
In accordance with the present invention, a number of optical parameters may be employed to determine the location of a target, such as a KDR, VEGF/KDR complex, cMet or HGF/cMet complex, with in vivo light imaging after injection of the subject with an optically-labeled heteromultimeric construct. Optical parameters to be detected in the preparation of an image may include, e.g., transmitted radiation, absorption, fluorescent or phosphorescent emission, light reflection, changes in absorbance amplitude or maxima, and elastically scattered radiation. For example, biological tissue is relatively translucent to light in the near infrared (NIR) wavelength range of 650-1000 nm. NIR radiation can penetrate tissue up to several centimeters, permitting the use of heteromultimeric contructs of the invention to image target-containing tissue in vivo. For example, heteromultimeric constructs comprised of KDR-, VEGF/KDR complex-, cMet-, or HGF/cMet-binding polypeptides may be used for optical imaging of KDR, VEGF/KDR complex, cMet, or HGF/cMet complex in vivo.
In another embodiment, the heteromultimeric constructs of the invention may be conjugated with photolabels, such as optical dyes, including organic chromophores or fluorophores, having extensively conjugated and hence delocalized ring systems and having absorption or emission maxima in the range of 400-1500 nm. The compounds of the invention may alternatively be derivatized with a bioluminescent molecule. The preferred range of absorption maxima for photolabels is between 600 and 1000 nm to minimize interference with the signal from hemoglobin. Preferably, photoabsorption labels have large molar absorptivities, e.g., >105 cm−1M−1, while fluorescent optical dyes will have high quantum yields. Examples of optical dyes include, but are not limited, to those described in WO 98/18497, WO 98/18496, WO 98/18495, WO 98/18498, WO 98/53857, WO 96/17628, WO 97/18841, WO 96/23524, WO 98/47538, and references cited therein. For example, the photolabels may be covalently linked directly to heteromultimers of the invention, such as, e.g., heteromultimers comprising KDR- or VEGF/Kt)R complex-binding peptides, or linked to such a heteromultimers via a linker, as described previously.
After injection of the optically-labeled heteromultimeric construct, the patient is scanned with one or more light sources (e.g., a laser) in the wavelength range appropriate for the photolabel employed in the agent. The light used may be monochromatic or polychromatic and continuous or pulsed. Transmitted, scattered, or reflected light is detected via a photodetector tuned to one or multiple wavelengths to determine the location of target-containing tissue (e.g., tissue containing KDR, VEGF/KDR complex, cMet, or HGF/cMet complex) in the subject. Changes in the optical parameter may be monitored over time to detect accumulation of the optically-labeled reagent at the target site (e.g., the site of angiogenesis). Standard image processing and detecting devices may be used in conjunction with the optical imaging reagents of the present invention.
The optical imaging reagents described above may also be used for acousto-optical or sonoluminescent imaging performed with optically-labeled imaging agents (see U.S. Pat. No. 5,171,298, WO 98/57666, and references therein). In acousto-optical imaging, ultrasound radiation is applied to the subject and affects the optical parameters of the transmitted, emitted, or reflected light. In sonoluminescent imaging, the applied ultrasound actually generates the light detected. Suitable imaging methods using such techniques are described in WO 98/57666, which is hereby incorporated by reference in its entirety.
5. Nuclear Imaging (Radionuclide Imaging) and Radiotherapy
Heteromultimers of the invention may be conjugated with a radionuclide reporter appropriate for scintigraphy, SPECT or PET imaging or with a radionuclide appropriate for radiotherapy. Constructs in which the heteromultimers of the invention are conjugated with both a chelator for a radionuclide useful for diagnostic imaging and a chelator for a radionuclide useful for radiotherapy are within the scope of the invention.
For use as a PET agent, a heteromultimer may be complexed with one of the various positron emitting metal ions, such as 51Mn, 52Fe, 60Cu, 68Ga, 72As, 94mTc, or 110In. The heteromultimeric constructs can also be labeled by halogenation using radionuclides, such as 18F, 124I, 125I, 131I, 123I, 77Br, and 76Br. Preferred metal radionuclides for scintigraphy or radiotherapy include 99mTc, 51Cr, 67Ga, 68Ga, 47Sc, 51Cr, 167Tm, 141Ce, 111In , 168Yb, 175Yb, 140La, 90Y, 88Y, 153Sm, 166Ho, 165Dy, 166Dy, 62Cu, 64Cu, 67Cu, 97Ru, 103Ru, 186Re, 188Re, 203Pb, 211Bi, 212Bi, 213Bi, 214Bi, 105Rh, 109Pd, 117mSn, 149Pm, 161Tb, 177Lu, 198Au and 199Au. The choice of metal or halogen will be determined based on the desired therapeutic or diagnostic application. For example, for diagnostic purposes the preferred radionuclides include 64Cu, 67Ga, 68Ga, 99mTc, and 111In. For therapeutic purposes,the preferred radionuclides include 64Cu, 90Y, 105Rh, 117mSn, 149Pm, 153Sm, 161Tb, 166Dy, 166Ho, 175Yb, 177Lu, 186/188 Re, and 199Au. 99mTc is particularly preferred for diagnostic applications because of its low cost, availability, imaging properties, and high specific activity. The nuclear and radioactive properties of 99mTc make this isotope an ideal scintigraphic imaging agent. This isotope has a single photon energy of 140 keV and a radioactive half-life of about 6 hours, and is readily available from a 99Mo-99mTc generator.
The metal radionuclides may be chelated by, e.g., linear, macrocyclic, terpyridine, and N3S, N2S2, or N4 chelants (see also U.S. Pat. No. 5,367,080, U.S. Pat. No. 5,364,613, U.S. Pat. No. 5,021,556, U.S. Pat. No. 5,075,099, U.S. Pat. No. 5,886,142), and other chelators known in the art including, but not limited to, HYNIC, DTPA, EDTA, DOTA, TETA, and bisamino bisthiol (BAT) chelators (see also U.S. Pat. No. 5,720,934). For example, N4 chelators are described in U.S. Pat. Nos. 6,143,274; 6,093,382; 5,608,110; 5,665,329; 5,656,254; and 5,688,487. Certain N3S chelators are described in PCT/CA94/00395, PCT/CA94/00479, PCT/CA95/00249 and in U.S. Pat. Nos. 5,662,885; 5,976,495; and 5,780,006. The chelator may also include derivatives of the chelating ligand mercapto-acetyl-acetyl-glycyl-glycine (MAG3), which contains an N3S, and N2S2 systems such as MAMA (monoamidemonoaminedithiols), DADS (N2S diaminedithiols), CODADS and the like. These ligand systems and a variety of others are described in Liu and Edwards, Chem Rev 99, 2235-2268 (1999) and references therein.
The chelator may also include complexes containing ligand atoms that are not donated to the metal in a tetradentate array. These include the boronic acid adducts of technetium and rhenium dioximes, such as are described in U.S. Pat. Nos. 5,183,653; 5,387,409; and 5,118,797, the disclosures of which are incorporated by reference herein, in their entirety.
In another embodiment, disulfide bonds of a binding polypeptide of the invention are used as two ligands for chelation of a radionuclide such as 99mTc. In this way the peptide loop is expanded by the introduction of Tc (peptide-S—S-peptide changed to peptide-S—Tc—S-peptide). This has also been used in other disulfide containing peptides in the literature (J. Q. Chen, A. Cheng, N. K. Owen, T. H. Hoffman, Y. Miao, S. S. Jurisson, T. P. Quinn. J. Nucl. Med. 42, 1847-1855 (2001) while maintaining biological activity. The other chelating groups for Tc can be supplied by amide nitrogens of the backbone, another cystine amino acid or other modifications of amino acids.
Particularly preferred metal chelators include those of Formula 20, 21, and 22 (for 111In and lanthanides such as paramagnetic Gd3+ and radioactive lanthanides, such as, for 177 90y 153 166 example 177Lu, 90Y, 153Sm, and 166Ho) and those of Formula 23, 24, and 25 (for radioactive 99mTc, 186Re, and 188Re) set forth below. These and other metal chelating groups are described in U.S. Pat. Nos. 6,093,382 and 5,608,110, which are incorporated by reference herein in their entirety. Additionally, the chelating group of formula 22 is described in, for example, U.S. Pat. No. 6,143,274; the chelating group of formula 24 is described in, for example, U.S. Pat. Nos. 5,627,286 and 6,093,382, and the chelating group of formula 25 is described in, for example, U.S. Pat. Nos. 5,662,885; 5,780,006; and 5,976,495.
In the above Formulas 20 and 21, R is alkyl, preferably methyl. In the above Formula 24, X is either CH2 or O, Y is either C1-C10 branched or unbranched alkyl; Y is aryl, aryloxy, arylamino, arylaminoacyl; Y is arylkyl—where the alkyl group or groups attached to the aryl group are C1-C10 branched or unbranched alkyl groups, C1-C10 branched or unbranched hydroxy or polyhydroxyalkyl groups or polyalkoxyalkyl or polyhydroxy-polyalkoxyalkyl groups, J is C(═O)—, OC(═O)—, SO2, NC(═O)—, NC(═S)—, N(Y), NC(═NCH3)—, NC(═NH)—, N═N—, homopolyamides or heteropolyamines derived from synthetic or naturally occurring amino acids; all where n is 1-100. Other variants of these structures are described, for example, in U.S. Pat. No. 6,093,382. The disclosures of each of the foregoing patents, applications and references are incorporated by reference herein, in their entirety.
The chelators may be covalently linked directly to the heteromultimers or linked to heteromultimers via a linker, as described previously, and then directly labeled with the radioactive metal of choice (see WO 98/52618, U.S. Pat. No. 5,879,658, and U.S. Pat. No. 5,849,261).
Complexes of radioactive technetium are particularly useful for diagnostic imaging and complexes of radioactive rhenium are particularly useful for radiotherapy. In forming a complex of radioactive technetium with the reagents of this invention, the technetium complex, preferably a salt of 99mTc pertechnetate, is reacted with the reagent in the presence of a reducing agent. Preferred reducing agents are dithionite, stannous and ferrous ions; the most preferred reducing agent is stannous chloride. Means for preparing such complexes are conveniently provided in a kit form comprising a sealed vial containing a predetermined quantity of a reagent of the invention to be labeled and a sufficient amount of reducing agent to label the reagent with 99mTc. Alternatively, the complex may be formed by reacting a heteromultimer of this invention, which is conjugated with an appropriate chelator with a pre-formed labile complex of technetium and another compound known as a transfer ligand. This process is known as ligand exchange and is well known to those skilled in the art. The labile complex may be formed using such transfer ligands as tartrate, citrate, gluconate or mannitol, for example. Among the 99mTc pertechnetate salts useful with the present invention are included the alkali metal salts such as the sodium salt, or ammonium salts or lower, alkyl ammonium salts.
Preparation of the complexes of the present invention where the metal is radioactive rhenium may be accomplished using as starting materials rhenium compounds wherein the metal is in the +5 or +7 oxidation state. Examples of compounds in which rhenium is in the Re(VII) state are NH4ReO4 or KReO4. Re(V) is available as, for example, [ReOCl4](NBu4), [ReOCl4](AsPh4), ReOCl3(PPh3)2 and as ReO2(pyridine)4+ (Ph is phenyl; Bu is n-butyl). Other rhenium reagents capable of forming a rhenium complex may also be used.
Radioactively-labeled scintigraphic imaging agents provided by the present invention must contain a suitable amount of radioactivity. In forming 99mTc complexes, it is generally preferred to form radioactive complexes in solutions containing radioactivity at concentrations of from about 0.01 millicurie (mCi) to 100 mCi per mL.
Generally, the unit dose to be administered has a radioactivity of about 0.01 mCi to about 100 mCi, preferably 1 mCi to 20 mCi. The solution to be injected at unit dosage is from about 0.01 mL to about 10 mL.
Typical doses of a radionuclide-labeled heteromultimeric construct imaging agent of the invention provide 10-50 mCi. After injection of the heteromultimeric radionuclide imaging agent into the patient, a PET camera or a gamma camera calibrated for the gamma ray energy of the nuclide incorporated in the imaging agent is used to image areas of uptake of the agent and quantify the amount of radioactivity present in the site. Imaging of the site in vivo can take place in a matter of a few minutes. However, imaging can take place, if desired, in hours or even longer, after the radiolabeled peptide is injected into a patient. In most instances, a sufficient amount of the administered dose will accumulate in the area to be imaged within about 0.1 of an hour to permit the taking of scintiphotos.
Proper dose schedules for the radiotherapeutic compounds of the present invention are known to those skilled in the art. The compounds can be administered using many methods which include, but are not limited to, a single or multiple IV or IP injections, using a quantity of radioactivity that is sufficient to cause damage or ablation of the targeted tissue, but not so much that substantive damage is caused to non-target (normal tissue). The quantity and dose required is different for different constructs, depending on the energy and half-life of the isotope that is used, the degree of uptake and clearance of the agent from the body and the mass of the tumor. In general, doses can range from a single dose of about 30-50 mCi to. a cumulative dose of up to about 3 Curies.
The radiotherapeutic compositions of the invention can include physiologically acceptable buffers, and can require radiation stabilizers to prevent radiolytic damage to the compound prior to injection. Radiation stabilizers are known to those skilled in the art, and may include, for example, para-aminobenzoic acid, ascorbic acid, gentistic acid and the like.
A single, or multi-vial kit that contains all of the components needed to prepare the radiopharmaceuticals of this invention, other than the radionuclide, is an integral part of this invention.
A single-vial kit preferably contains a chelating ligand (if a metal radionuclide is used), a source of a stannous salt (if reduction is required, e.g., when using technetium), or other pharmaceutically acceptable reducing agent, and is appropriately buffered with pharmaceutically acceptable acid or base to adjust the pH to a value of about 3 to about 9. The quantity and type of reducing agent used would depend highly on the nature of the exchange complex to be formed. The proper conditions are well known to those that are skilled in the art. It is preferred that the kit contents be in lyophilized form. Such a single vial kit may optionally contain labile or exchange ligands such as glucoheptonate, gluconate, mannitol, malate, citric or tartaric acid and can also contain reaction modifiers such as diethylenetriamine-pentaacetic acid (DPTA), ethylenediamine tetraacetic acid (EDTA), or α-, β-, or γ-cyclodextrin that serve to improve the radiochemical purity and stability of the final product. The kit may also contain stabilizers, bulking agents such as mannitol, that are designed to aid in the freeze-drying process, and other additives known to those skilled in the art.
A multi-vial kit preferably contains the same general components but employs more than one vial in reconstituting the radiopharmaceutical. For example, one vial may contain all of the ingredients that are required to form a labile Tc(V) complex on addition of pertechnetate (e.g., the stannous source or other reducing agent). Pertechnetate is added to this vial, and after waiting an appropriate period of time, the contents of this vial are added to a second vial that contains the ligand, as well as buffers appropriate to adjust the pH to its optimal value. After a reaction time of about 5 to 60 minutes, the complexes of the present invention are formed. It is advantageous that the contents of both vials of this multi-vial kit be lyophilized. As above, reaction modifiers, exchange ligands, stabilizers, bulking agents, etc. may be present in either or both vials.
In a preferred embodiment, the radiotherapeutic and radiodiagnostic agents described herein are conjugated to one or more heteromultimers comprised of KDR- or VEGF/KDR complex-binding moieties, and target tissue expressing KDR. As shown in the Examples, these targeted radiopharmaceuticals will localize at sites of angiogenesis and other tissue expressing KDR, and may be used to treat or image angiogenic tissue or other tissue expressing KDR. In another preferred embodiment illustrated in the Examples, the radiotherapeutic and radiodiagnostic agents described herein are conjugated to one or more heteromultimers comprised of cMet- or HGF/cMet complex-binding moieties, and, target tissue expressing cMet. These targeted radiopharmaceuticals will localize at sites of hyperproliferation or angiogenesis (including tumors) and other tissue expressing cMet, and will enable imaging and treatment of such tissue.
6. Other Therapeutic Applications
The heteromultimeric constructs of the present invention can be used to improve the activity and/or efficacy of therapeutic agents by, for example, improving their affinity for or residence time at the target. In this embodiment heteromultimers are conjugated with the therapeutic agent. Alternatively, as discussed above, a liposome or bubble containing a therapeutic agent may be conjugated to heteromultimers of the invention. The therapeutic agent may be a radiotherapeutic, discussed above, a drug, chemotherapeutic or tumorcidal agent, genetic material, or a gene delivery vehicle, etc. The heteromultimer portion of the conjugate causes the therapeutic to “home” to the sites of target expression/localization and to improve the affinity of the conjugate for these sites, so that the therapeutic activity of the conjugate is more localized and concentrated at the target sites. For example, in one embodiment heteromultimers including KDR- or VEGF/KDR complex-binding polypeptides, can be used to improve the activity of therapeutic agents (such as anti-angiogenic or tumorcidal agents) against undesired angiogenesis such as occurs in neoplastic tumors, by providing or improving their affinity for KDR or the VEGF/KDR complex and their residence time at a KDR or VEGF/KDR complex on endothelium undergoing angiogenesis. In this aspect of the invention, hybrid agents are provided by conjugating KDR- or VEGF/KDR complex-binding heteromultimers with a therapeutic agent. Such heteromultimeric constructs will be useful in treating angiogenesis associated diseases, especially neoplastic tumor growth and metastasis, in mammals, including humans. The method of treatment comprises administering to a mammal in need thereof an effective amount of a heteromultimeric construct comprising KDR- or VEGF/KDR complex-binding polypeptides conjugated with a therapeutic agent. The invention also provides the use of such conjugates in the manufacture of a medicament for the treatment of angiogenesis associated diseases in mammals, including humans. Heteromultimeric constructs of the invention comprising cMet- or HGF/cMet complex-binding moieties may be used similarly to treat disease associated with hyperproliferation or angiogenesis.
Suitable therapeutic agents for use in this aspect of the invention include, but are not limited to: antineoplastic agents, such as platinum compounds (e.g., spiroplatin, cisplatin, and carboplatin), methotrexate, adriarnycin, mitomycin, ansamitocin, bleomycin, cytosine, arabinoside, arabinosyl adenine, mercaptopolylysine, vincristine, busulfan, chlorambucil, melphalan (e.g., PAM, a,LPAM or phenylalanine mustard), mercaptopurine, mitotane, procarbazine hydrochloride, dactinomycin (actinomycin D), daunorubcin, hydrochloride, doxorubicin hydrochloride, taxol, mitomycin, plicamycin (mithramycin), aminoglutethimide, estramustine phosphate sodium, flutamide, acetate, megestrol acetate, tamoxifen citrate, testolactone, trilostane, amsacrine (m-AMSA),
Where heteromultimeric constructs target other tissue and are useful in treating other disease states the skilled artisan may substitute an appropriate therapeutic agent.
The heteromultimeric constructs of the present invention may also be used to target genetic material to specific cells. For example, the heteromultimeric constructs of the present invention may be used to localize genetic material to cells or tissue containing the desired target. Thus such constructs may be useful in gene therapy. The genetic material may include nucleic acids, such as RNA or DNA, of either natural or synthetic origin, including recombinant RNA and DNA and antisense RNA and DNA. Types of genetic material that may be used include, for example, genes carried on expression vectors such as plasmids, phagemids, cosmids, yeast artificial chromosomes (YACs) and defective or “helper” viruses, antigene nucleic acids, both single and double stranded RNA and DNA and analogs thereof, such as phosphorothioate and phosphorodithioate oligodeoxynucleotides. Additionally, the genetic material may be combined, for example, with lipids, proteins or other polymers. Delivery vehicles for genetic material may include, for example, a virus particle, a retroviral or other gene therapy vector, a liposome, a complex of lipids (especially cationic lipids) and genetic material, a complex of dextran derivatives and genetic material, etc.
In a preferred embodiment the heteromultimeric constructs of the invention are utilized in gene therapy for treatment of diseases associated with angiogenesis. In this embodiment, genetic material, or one or more delivery vehicles containing genetic material, e.g., useful in treating an angiogenesis-related disease, may be conjugated to one or more KDR- or VEGF/KDR complex-binding heteromultimers or cMet- or HGF/cMET complex-binding heteromultimers of the invention and administered to a patient.
Constructs including genetic material and the KDR-binding heteromultimers of the invention may be used, in particular, to selectively introduce genes into angiogenic endothelial cells, which may be useful not only to treat cancer, but also after angioplasty, where inhibition of angiogenesis may inhibit restenosis.
Therapeutic agents and heteromultimers of the invention can be linked or fused in known ways, using the same type of linkers discussed herein. Preferred linkers will be substituted or unsubstituted alkyl chains, amino acid chains, polyethylene glycol chains, and other polymeric linkers known in the art, which may be employed singly or in combination with each other. More preferably, if the therapeutic agent is itself a protein, for which the encoding DNA sequence is known, the therapeutic protein and a binding polypeptide of the invention may be coexpressed from the same synthetic gene, created using recombinant DNA techniques, as described above. For example, the coding sequence for a binding polypeptide may be fused in frame with that of the therapeutic protein, such that the peptide is expressed at the amino- or carboxy-terminus of the therapeutic protein, or at a place between the termini, if it is determined that such placement would not destroy the required biological function of either the therapeutic protein or the binding polypeptide. A particular advantage of this general approach is that concatamerization of multiple, tandemly arranged binding polypeptides is possible, thereby increasing the number and concentration of binding sites associated with each therapeutic protein. In this manner binding peptide avidity is increased which would be expected to improve the efficacy of the recombinant therapeutic fusion protein.
Similar recombinant proteins containing one or more coding sequences for a binding polypeptide may be useful in imaging or therapeutic applications. For example, in a variation of the pre-targeting applications discussed infra, the coding sequence for a KDR-, VEGF/KDR complex-, cMet-, or HGF/cMet-binding peptide may be fused in frame to a sequence encoding an antibody (or an antibody fragment or recombinant DNA construct including an antibody, etc.) which, for example, binds to a chelator for a radionuclide (or another detectable label). The antibody expressing the KDR-, VEGF/KDR complex-, cMet-, or HGF/cMet-binding polypeptide is then administered to a patient and allowed to localize and bind to KDR- or cMet-expressing tissue. After the non-binding antibodies have been allowed to clear, the chelator-radionuclide complex (or other detectable label), which the antibody recognizes, is administered, permitting imaging of or radiotherapy to the KDR- or cMet-expressing tissues. Additionally, the coding sequence for a binding peptide may be fused in frame to a sequence encoding, for example, serum proteins or other proteins that produce biological effects (such as, e.g., apoptosis, coagulation, internalization, differentiation, cellular stasis, immune system stimulation or suppression, or combinations thereof). The resulting recombinant proteins are useful in imaging, radiotherapy, and therapies directed against cancer and other diseases that involve angiogenesis or diseases associated with the pathogens discussed herein.
Additionally, heteromultimers of the present invention may themselves be used as therapeutics to treat a number of diseases. For example, where binding of a protein or other molecule (e.g., a growth factor, hormone etc.) is necessary for, or contributes to, a disease process, and a binding moiety inhibits such binding, heteromultimers including such binding moieties may be useful as therapeutics. Similarly, where binding of a binding moiety itself inhibits a disease process, heteromultimers containing such binding moieties may also be useful as therapeutics.
As binding of VEGF and activation of KDR is necessary for angiogenic activity, in one embodiment of the present invention, heteromultimers including KDR- or VEGF/KDR complex-binding polypeptides that inhibit the binding or inhibit VEGF to KDR (or otherwise inhibit activation of KDR) may be used as anti-angiogenic agents. Certain heteromultimers of the invention that inhibit activation of KDR are discussed in the Examples. A particularly preferred heteromultimer is the heterodimer-containing construct D1 (structure shown below in Example 9). Other preferred heterodimer constructs include D4, D5, D6, D7, D10, D13, D17, D23, D24, D25, and D26 (structures provided in the Examples below). These and other heteromultimers may be useful in the treatment of cancer or other diseases associated with inappropriate or excessive angiogenesis, such as, for example, arthritis and atherosclerotic plaques, trachoma, corneal graft neovascularization, psoriasis, scleroderma, hemangioma and hypertrophic'scarring, vascular adhesions, angiofibroma, and ocular diseases, such as, e.g., diabetic retinopathy, retinopathy of prematurity, macular degeneration, corneal graft rejection, neovascular glaucoma, retrolental fibroplasia, rebeosis, Osler-Webber Syndrome, myocardial angiogenesis, plaque neovascularization, telangiectasia, hemophiliac joints, angiofibroma and wound granulation. Other conditions that involve angiogenesis include, for example, solid tumors, tumor metastases and benign tumors. Such tumors and related disorders are well known in the art and include, for example, melanoma, central nervous system tumors, neuroendocrine tumors, sarcoma, multiple myeloma as well as cancer of the breast, lung, prostate, colon, head and neck, and ovaries. Additional tumors and related disorders are listed in Table I of U.S. Pat. No. 6,025,331, issued Feb. 15, 2000 to Moses, et al., the teachings of which are incorporated herein by reference. Benign tumors include, for example, hemangiomas, acoustic neuromas, neurofibromas, trachomas, and pyogenic granulomas. Other relevant diseases or conditions that involve blood vessel growth include, e.g., intestinal adhesions, atherosclerosis, scleroderma, and hypertropic scars, and ulcers. Furthermore, the heteromultimers of the present invention can be used to reduce or prevent uterine neovascularization required for embryo implantation, for example, as a birth control agent.
Heteromultimers of this invention can also be useful for treating vascular permeability events that can result when VEGF binds KDR. See, e.g., Example 30. In renal failure it has been shown that anti-VEGF antibodies can reverse damage and in a similar way the compounds of the invention can reverse renal permeability pathogenesis in, for example, diabetes.
As the interruption, meaning the partial or total bockage, of the HGF interaction with the cMet receptor slows tumor progression, in another embodiment, the heteromultimers include cMet- or HGF/cMet complex-binding polypeptides that inhibit the binding of cMet to HGF (or otherwise inhibit the activation of cMet) may be used to treat tumors and other hyperproliferative disorders. Particular heteromultimers that inhibit cMet are discussed in the Examples. A preferred heteromultimer is D28 (structure shown below in Example 9).
Furthermore, heteromultimers of the present invention may be useful in treating diseases associated with certain pathogens, including, for example, malaria, HIV, SIV, Simian hemorrhagic fever virus, etc. Sequence homology searches of KDR-binding peptides identified by phage display using the BLAST program at NCBI has identified a number of homologous proteins known or expected to be present on the surface of pathogenic organisms. Homologies have been noted between KDR- and VEGF/KDR complex-binding polypeptides and proteins from various malaria strains, HIV, SIV, simian hemorrhagic fever virus, and an enterohemorrhagic E. coli strain. Some of the homologous proteins, such as PfEMP1 and EBL-1, are hypermutable adhesion proteins known to play roles in virulence. These proteins possess multiple binding sites that are capable of binding to more than one target molecule on the host's surface. Their high mutation and recombination rates allow them to develop new binding sites quickly to promote survival and/or invasion. Similarly, proteins such as gp120 of HIV (which also has homology to some of the KDR-binding peptides disclosed herein) play critical roles in the adhesion of pathogens to their hosts.
Although not reported previously, it is possible that many of the pathogen proteins with homology to the KDR-binding peptides disclosed herein also bind to KDR. Comparison of the pathogen protein sequences with the corresponding peptide sequences may suggest changes in the peptide sequence or other modifications that will enhance its binding properties. Additionally, heteromultimeric constructs, including the KDR-binding peptide sequences disclosed herein, may be useful in blocking infection with the pathogen species that possesses the homology. Indeed, a strategy is being employed to block HIV infection by trying to prevent virus envelope proteins from binding to their known cellular surface targets such as CD4. See Howie S E, et al., “Synthetic peptides representing discontinuous CD4 binding epitopes of HIV-1gp120 that induce T cell apoptosis and block cell death induced by gp120,” FASEB J 12(11):991-8 (Aug. 1998). Thus, KDR may represent a previously unknown target for a number of pathogens, and the heteromultimeric constructs including KDR- or VEGF/KDR complex-binding peptides may therefore be useful in treating the diseases associated with these pathogens.
In the above treatment methods, the compounds may be administered by any convenient route customary for therapeutic agents; e.g., parenterally, enterally or intranasaly, and preferably by infusion or bolus injection, or by depot or slow release formulation. In a preferred embodiment, the composition may be formulated in accordance with routine procedures as a pharmaceutical composition adapted for intravenous administration to human beings. Typically, compositions for intravenous administration are solutions in sterile isotonic aqueous buffer. Other pharmaceutically acceptable carriers include, but are not limited to, sterile water, saline solution, buffered saline (including buffers like phosphate or acetate), alcohol, vegetable oils, polyethylene glycols, gelatin, lactose, amylose, magnesium stearate, talc, silicic acid, paraffin, etc. Where necessary, the composition may also include a solubilizing agent and a local anaesthetic such as, e.g.s lidocaine to ease pain at the site of the injection; and further may include preservatives, stabilizers, wetting agents, emulsifiers, salts, lubricants, etc. as long as they do not react deleteriously with the active compounds. Similarly, the composition may comprise conventional excipients, i.e., pharmaceutically acceptable organic or inorganic carrier substances suitable for parenteral, enteral or intranasal application which do not deleteriously react with the active compounds. Generally, the ingredients will be supplied either separately or mixed together in unit dosage form, for example, as a dry lyophilized powder or water free concentrate in a hermetically sealed container such as, e.g., an ampoule or sachette indicating the quantity of active agent in activity units. Where the composition is to be administered by infusion, it can be dispensed with an infusion bottle containing sterile pharmaceutical grade “water for injection” or saline. Where the composition is to be administered by injection, an ampoule of sterile water for injection or saline may be provided so that the ingredients may be mixed prior to administration.
The quantity of material administered will depend on the seriousness of the condition. For example, for treatment of anangiogenic condition, e.g., in the case of neoplastic tumor growth, the position and size of the tumor will affect the quantity of material to be administered. The precise dose to be employed and mode of administration must per force in view of the nature of the complaint be decided according to the circumstances by the physician supervising treatment. In general, dosages of the heteromultimer/therapeutic agent conjugate will follow the dosages that are routine for the therapeutic agent alone, although the improved affinity of a heteromultimer of the invention for its target may allow a decrease in the standard dosage.
Such conjugate pharmaceutical compositions are preferably formulated for parenteral administration, and most preferably for intravenous or intra-arterial administration. Generally, and particularly when administration is intravenous or intra-arterial, pharmaceutical compositions may be given as a bolus, as two or more doses separated in time, or as a constant or non-linear flow infusion.
The heteromultimers can be administered to an individual over a suitable time course, depending on the nature of the condition and the desired outcome. The heteromultimeric constructs can be administered prophylactically, i.e., before the condition is diagnosed or, to an individual predisposed to a condition. Alternatively, the heteromultimers of the invention can be administered while the individual exhibits symptoms of the condition, or after the symptoms have passed or otherwise been relieved (such as after removal of a tumor). In addition, the heteromultimers of the present invention can be administered as a part of a maintenance regimen, for example to prevent or lessen the recurrence, symptoms or condition. As described herein, the heteromultimers of the present invention can be administered systemically or locally.
As used herein the term “therapeutic” includes at least partial alleviation of symptoms of a given condition. The heteromultimeric constructs of the present invention need not produce a complete alleviation of symptoms to be useful. For example, treatment of an individual can result in a decrease in the size of a tumor or diseased area, or prevention of an increase in size of the tumor or diseased area or partial alleviation of other symptoms. Treatment can result in reduction in the number of blood vessels in an area of interest or can prevent an increase in the number of blood vessels in an area of interest. Treatment can also prevent or lessen the number or size of metastic outgrowths of the main tumor(s).
In one embodiment, symptoms that can be alleviated include, e.g., physiological characteristics such as VEGF receptor activity and migration ability of endothelial cells. The heteromultimers of the present invention can inhibit activity of VEGF receptors, including VEGF-2/KDR, VEGF-1/Flt-1 and VEGF-3/Flt-4. Such inhibition can also be detected, for example, by measuring the phosphorylation state of the receptor in the presence of or after treatment with the binding polypeptides or constructs thereof. Based on the teachings provided herein, one of ordinary skill in the art would know how and be able to administer a suitable dose of binding polypeptide or construct thereof as provided herein and measured before and after treatment. In another embodiment, the phosphorylation state of the relevant receptor, or the migration ability of endothelial in an area of interest, can be measured in samples taken from the individual. The VEGF receptors or endothelial cells can be isolated from the sample and used in assays described herein.
The dosage of the heteromultimers may depend on the age, sex, health, and weight of the individual, a well as the nature of the condition and overall treatment regimen. The biological effects of the multimers are described herein. Therefore, based on the biological effects of the heteromultimers provided herein, and the desired outcome of treatment, the preferred dosage is determinable by one of ordinary skill in the art through route optimization procedures. Typically, the daily regimen is in the range of about 0.1 μg/kg to about 1 mg/kg.
The heteromultimers provided herein can be administered as the sole active ingredient together with a pharmaceutically acceptable excipient, or can be administered together with other binding polypeptides and constructs thereof, other therapeutic agents, or a combination thereof. In addition, the heteromultimers can be conjugated to therapeutic agents, for example, to improve specificity, residence time in the body, or therapeutic effect. Such other therapeutic agents include, for example, other antiangiogenic compounds, and tumoricidal compounds. The therapeutic agent can also include antibodies.
Furthermore, the heteromultimers of the present invention can be used as an endothelial cell homing device. Therefore, the heteromultimeric constructs can be conjugated to nucleic acids encoding, for example, a therapeutic polypeptide, in order to target the nucleic acid to endothelial cells. Once exposed to the nucleic acid, thereby delivering the therapeutic peptide to the target cells.
In another embodiment of the invention, the. therapeutic agent can be associated with an ultrasound contrast agent composition, said ultrasound contrast agent including the KDR-, VEGF/KDR complex-, cMet, or HGF/cMet-binding peptides of the invention linked to the material employed to form the vesicles (particularly microbubbles or microballoons) comprised in the contrast agent, as previously described. For instance, said contrast agent/therapeutic agent association can be carried out as described in U.S. Pat. No. 6,258,378, herein incorporated by reference. Thus, after administration of the ultrasound contrast agent and the optional imaging of the contrast agent bound to the pathogenic site expressing the KDR, VEGF/KDR complex, cMet, or HGF/cMet complex, the pathogenic site can be irradiated with an energy beam (preferably ultrasonic, e.g., with a frequency of from 0.3 to 3 MHz), to cause the bursting of microvesicles, as disclosed for instance in the above cited U.S. Pat. No. 6,258,378. The therapeutic effect of the therapeutic agent can thus be advantageously enhanced by the energy released by the burst of the microvesicles, in particular causing an effective delivery of the therapeutic agent to the targeted pathogenic site.
As discussed above, the heteromultimers can be administered by any suitable route. Suitable routes of administration include, but are not limited to, topical application, transdermal, parenteral, gastrointestinal, intravaginal, and transalvcolar. Compositions for the-desired route of administration can be prepared by any of the methods well known in the pharmaceutical arts. Details concerning dosages, dosage forms, modes of administration, composition and the like are further discussed in a standard pharmaceutical text, such as Remington's Pharmaceutical Sciences, 18th ed., Alfonso R. Gennaro, ed. (Mack Publishing Co., Easton, Pa. 1990), which is hereby incorporated by reference.
For topical applications, the heteromultimers can be suspended, for example, in a cream, gel or rinse which allows the polypeptides or constructs to penetrate the skin and enter the blood stream, for systemic delivery, or contact the are of interest, for localized delivery. Compositions suitable for topical application include any pharmaceutically acceptable base in which the polypeptides are at least minimally soluble.
For transdermal administration, the heteromultimers can be applied in pharmaceutically acceptable suspension together with a suitable transdermal device or “patch.” Examples of suitable transdermal devices for administration of the heteromultimers of the present invention are described, for example, in U.S. Pat. No. 6,165,458, issued Dec. 26, 2000 to Foldvari, et al., and U.S. Pat. No. 6,274,166B1, issued Aug. 4, 2001 to Sintov, et al., the teachings of which are incorporated herein by reference.
For parenteral administration, the heteromultimers can be suspended, for example, in a pharmaceutically acceptable sterile isotonic solution, such as saline and phosphate buffered saline. The constructs of the invention can then be injected intravenously, intramuscularly, intraperitoneally, or subcutaneously.
For gastrointestinal and intravaginal administration, the heteromultimers can be incorporated into pharmaceutically acceptable powders, pills or liquids for ingestion, and suppositories for rectal or vaginal administration.
For transalveolar, buccal or pulmonary administration, the heteromultimers can be suspended in a pharmaceutically acceptable excipient suitable for aerosolization and inhalation or as a mouthwash. Devices suitable for transalveolar administration such as atomizers and vaporizes are also included within the scope of the invention. Suitable formulations for aerosol delivery of polypeptides using buccal or pulmonary routes can be found, for example in U.S. Pat. No. 6,312,665B1, issued Nov. 6, 2001 to Pankaj Modi, the teachings of which are incorporated herein by reference.
In addition, the heteromultimers of the present invention can be administered nasally or ocularly, where the heteromultimers are suspended in a liquid pharmaceutically acceptable agent suitable for dropwise dosing.
The heteromultimers of the present invention can be administered such that the polypeptide is released in the individual over an extended period of time (sustained or controlled release). For example, the heteromultimers can be formulated into a composition such that a single administration provides delivery of the constructs of the invention for at least one week, or over the period of a year or more. Controlled release systems include monolithic or reservoir-type microcapsules, depot implants, osmotic pumps, vesicles, micelles, liposomes, transdermal patches and iontophoretic devices. In one embodiment, the heteromultimers of the present invention are encapsulated or admixed in a slow degrading, non-toxic polymer. Additional formulations suitable for controlled release of constructs of the invention are described in U.S. Pat. No. 4,391,797, issued Jul. 5, 1983, to Folkman, et al., the teachings of which are incorporated herein by reference.
Another suitable method for delivering the heteromultimers of the present invention to an individual is via in vivo production of the polypeptides. Genes encoding the polypeptides can be administered to the individual such that the encoded polypeptides are expressed. The genes can be transiently expressed. In a particular embodiment, the genes encoding the polypeptide are transfected into cells that have been obtained from the patient, a method referred to as ex vivo gene therapy. Cells expressing the polypeptides are then returned to the patient's body. Methods of ex vivo gene therapy are well known in the art, and are described, for example, in U.S. Pat. No. 4,391,797, issued Mar. 21, 1998 to Anderson, et al., the teachings of which are incorporated herein by reference.
Preparation and tests of heteromultimeric constructs in accordance with this invention will be further illustrated in the following examples. The specific parameters included in the following examples are intended to illustrate the practice of the invention, and they are not presented to in any way limit the scope of the invention.
The present invention features multivalent constructs which bind to a target of interest, as well as various methods related to the use of these constructs. The present invention uses small targeting moieties which bind to different binding sites of the same target, allowing for improved localization to the desired target, and providing an improved means for detecting, imaging and/or treating the target site.
Preparation and use of multivalent (e.g., dimeric or multimeric) targeting constructs which include two or more targeting moieties, for example binding polypeptides, specific for different binding sites of the same target are described herein. These targeting constructs may be linked or conjugated to a detectable label and/or a therapeutic agent (as defined herein) and used to deliver the detectable label and/or therapeutic agent to the target of interest. Thus, in addition to the targeting constructs themselves, the invention includes diagnostic imaging agents and therapeutic agents useful in diagnostic imaging and treating various disease states. Furthermore, the invention includes use of the targeting constructs of the invention themselves to treat disease.
In one aspect, the present invention features a compound having a plurality of binding moieties, wherein at least two binding moieties have specificity for different binding sites on the same target. In preferred embodiments, the plurality of binding moieties includes a polypeptide. In other preferred embodiments, the targeting moieties are all binding polypeptides which bind to different sites on the desired target. In certain preferred embodiments, the target is a protein, a receptor, or a receptor/ligand complex and the binding polypeptides bind to different epitopes on the protein, the receptor, or the receptor/ligand complex. In one embodiment, the target is a receptor involved in angiogenesis, hyperproliferative disorders or wound healing. In another embodiment the target includes a family of receptors, such as, for example, protein-tyrosine kinase receptors. In a particularly preferred embodiment, the target is KDR or the KDR/VEGF complex, and the binding moieties, particularly binding peptides, bind to different epitopes on KDR or the KDR/VEGF complex.
In another preferred embodiment, the target is the hepatocyte growth factor (HGF) receptor (cMet) or the HGF/cMet complex, and the binding moieties (particularly binding polypeptides) bind to different epitopes on cMet or the HGF/cMet complex.
In further preferred embodiments, the affinity constant of a compound of the invention for its target is greater than the affinity constant of a constituent polypeptide for the target.
In another aspect, the compounds of the invention include a labeling group or a therapeutic agent. In certain embodiments, the compounds of the invention include a linker between a binding moiety and the labeling group. For example, the linker may include a substituted alkyl chain, an unsubstituted alkyl chain, a polyethylene glycol derivative, an amino acid spacer, a sugar, an aliphatic spacer, an aromatic spacer, a lipid molecule, or combination thereof. Preferred labeling groups include a radionuclide, a paramagnetic metal ion, an ultrasound contrast agent, and/or a photolabel. For example, preferred paramagnetic metal ions used in compounds of the invention include Mn2+, Cu2+, Fe2+, Co2+, Ni2+, Gd3+, Eu3+, Dy3+, Pr3+, Cr3+, Co3+, Fe3+, Ti3+, Tb3+, Nd3+, Sm3+, Ho3+, Er3+, Pa4+, and Eu2+.
Radionuclides are also preferred detectable labels and therapeutic agents. The choice of radionuclide will be determined based on the desired therapeutic or diagnostic application. In a preferred embodiment, where the. detectable label is a paramagnetic metalor a radionuclide, the compounds of the invention include a chelator or chelating group. Preferable chelators include DTPA, DOTA, DO3A, EDTA, TETA, EHPG, HBED, NOTA, DOTMA, TETMA, PDTA, TTHA, LICAM, or MECAM. For use as a PET agent, a peptide may be complexed with one of the various positron emitting metal ions, such as 51Mn, 52Fe, 60Cu, 68Ga, 72As, 94mTc, or 110In. The heteromultimeric constructs can also be labeled by halogenation using radionuclides, such as 18F, 124I, 125I, 123I, 77Br, and 76Br. Preferred metal radionuclides for scintigraphy or radiotherapy include 99mTc, 51Cr, 67Ga, 68Ga, 47Sc, 51Cr, 167Tm, 141Ce, 111In, 168Yb, 175Yb, 140La, 90Y, 88Y, 153Sm, 166Ho, 165Dy, 166Dy, 62Cu, 64Cu, 67Cu, 97Ru, 103Ru, 186Re, 188Re, 203Pb , 211Bi, 212Bi, 213Bi, 214Bi, 105Rh, 109Pd, 117mSn, 149Pm, 161Tb, 177Lu, 198Au and 199Au. The choice of metal or halogen will be determined based on the desired therapeutic or diagnostic application. For example, for diagnostic purposes the preferred radionuclides include 64Cu, 67Ga, 68Ga, 99mTc, and 111In. For therapeutic purposes, the preferred radionuclides include 64Cu, 90Y, 105Rh, 111In, 117mSn, 149Pm, 153Sm, 161Tb, 166Dy, 166Ho, 175Yb, 177Lu, 186/188Re, and 199Au. A most preferred chelator used in compounds of the invention is 1-substituted 4,7,10-tricarboxymethyl 1,4,7,10 tetraazacyclododecane triacetic acid (DO3A). Preferably, a radioactive lanthanide, such as, for example, 177Lu, 90Y, 153Sm, 111In, or 166Ho is used with DOTA or DO3A in compounds of the invention.
Compounds of the invention include chelators having the following structure:
where X is CH2 or O; Y is C1-C10 branched or unbranched alkyl, aryl, aryloxy, arylamino, arylaminoacyl, or aralkyl comprising C1-C10 branched or unbranched alkyl groups, C1-C10 branched or unbranched hydroxy or polyhydroxyalkyl groups or polyalkoxyalkyl or polyhydroxy-polyalkoxyalkyl groups; J is C(═O)—, OC(═O)—, SO2—, NC(═O)—, NC(═S)—, N(Y), NC(═NCH3)—, NC(═NH), N═N—, a homopolyamide or a heteropolyamine derived from synthetic or naturally occurring amino acids; and n is 1-100. Most preferably, the compounds further include 99mTc, 186Re, or 188Re.
In one embodiment, compounds of the invention include a chelator having the following structure:
Most preferably, the compound further includes 99mTc, 186Re, or 188Re.
In another embodiment, the chelator comprises a compound having the following structure:
Most preferably, the compounds further includes 99mTc.
In other embodiments, compounds of the invention include a chelator having the following structure:
where R is an alkyl group, such as CH3. Most preferably, the compound further includes 177Lu, 90Y, 153Sm, 111In, or 166Ho.
In yet another embodiment, compounds of the invention include. a chelator having the following structure:
where R is an alkyl group, such as CH3. Most preferably, the compound further includes 177Lu, 90Y, 153Sm, 111In, or 166Ho.
In other embodiments, the compounds of the invention include a chelator having the following structure:
Most preferably, the compound further includes 177Lu, 90Y, 153Sm, 111In, or 166Ho.
Preferred ultrasound contrast agents for use in compounds of the invention include phospholipid stabilized microbubbles or microballoons comprising a fluorinated gas.
One preferred embodiment of the invention includes compounds comprising at least two binding moieties with specificity for different binding sites on a target. Preferably the target is a single receptor or receptor/ligand complex such as, for example, KDR or the KDR/VEGF complex or cMet of the cMet/VEGF complex. In further preferred embodiments, the binding moieties bind to different epitopes on the receptor or receptor/ligand complex. In a particularly preferred embodiment the binding moieties include a polypeptide. In other preferred embodiments, a compound of the invention includes a polypeptide having the amino acid sequence of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:12, SEQ ID NO:26, SEQ ID NO:27, SEQ ID NO:28, or SEQ ID NO:29. The invention also provides a compound having one or more of the foregoing amino acid sequences that have been modified to include one or more amino acid substitutions, amide bond substitutions, D-amino acid substitutions, glycosylated amino acids, disulfide mimetic substitutions, amino acid translocations, or has been modified to include a retroinverso peptide, a peptoid, a retro-inverso peptoid, and/or a synthetic peptide. In preferred embodiments, the compound of the invention comprises SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO: 11, SEQ ID NO:12, SEQ ID NO:26, and/or SEQ ID NO:27. In a more preferred embodiment such compounds further include a labeling group or therapeutic agent as described herein.
In another aspect, the invention features diagnostic imaging methods using compounds of the invention that include a labeling group. Methods of the invention include the steps of administering to a patient a pharmaceutical preparation that includes a compound of the invention having a labeling group, and imaging the compound after administration to the patient. In preferred embodiments, the imaging step includes magnetic resonance imaging, ultrasound imaging, optical, imaging, sonoluminescence imaging, photoacoustic imaging, or nuclear imaging. In these methods, the administering step may include, e.g., inhalation, transdermal absorbtion, intramuscular injection, subcutaneous injection, intravenous injection, intraperitoneal injection,. intraarterial injection or parenteral administration.
In another aspect, the compounds of the invention serve as therapeutic agents themselves and/or include a therapeutic agent. In certain embodiments, the compounds of the invention include a linker between a binding moiety and the therapeutic agent. For example, the linker may include a substituted alkyl chain, an unsubstituted alkyl chain, a polyethylene glycol derivative, an amino acid or peptide spacer, a sugar, an aliphatic spacer, an aromatic spacer, a lipid molecule, or combination thereof. Preferred therapeutic agents for use with compounds of the invention include a bioactive agent, a cytotoxic agent, a drug, a chemotherapeutic agent, or a radiotherapeutic agent.
In another aspect, the invention features a method of treating a disease by administering to a patient a pharmaceutical preparation including a compound of the invention. In one embodiment, where one or more binding moieties of the compound inhibits a biological process that contributes to a disease state, the compound may be administered to treat that disease state. For example, the binding moieties may inhibit the biological process by preventing or diminishing the activity of the receptor (e.g., by competition with the natural ligand for the receptor, by directly inhibiting the receptor activity whether or not the natural ligand is bound, or by a combination of the two). Thus, a heteromultimeric compound of the invention may inhibit the activity of, for instance KDR or cMet, and thus inhibit angiogenesis and/or hyperproliferation and consequently the diseases these processes contribute to. Therefore, the invention features a method of treating a disease by administering to a patient a pharmaceutical preparation including a compound of the invention alone or attached or linked to a separate therapeutic agent. In preferred embodiments, the invention features a method of treating a disease associated with angiogenesis or hyperproliferation. In a most preferred embodiment, the disease is neoplastic tumor growth.
The invention also features a method of screening for heteromultimeric compounds having improved binding affinity. This method includes the steps of preparing a labeled heteromultimeric compound comprising a plurality of binding moieties, wherein at least two binding moieties bind to different binding sites of a target; contacting the labeled heteromultimeric compound with a target; determining a binding strength of the labeled heteromultimeric compound (for example, by determining the dissociation constant); and comparing the binding strength (e.g., dissociation constant) of the labeled heteromultimeric compound with the binding strength (e.g., dissociation constant) of one or more individual binding moieties. In preferred embodiments of this method one of the binding moieties includes a polypeptide. In another preferred embodiment, the target is KDR or a KDR/VEGF complex. In a preferred embodiment, one of the polypeptides used in this method is SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, or SEQ ID NO:12. Preferably, the method includes the step of identifying a labeled heteromultimeric compound having a binding strength (for example, as measured by a decreased dissociation constant) that is greater than the binding strength of a constituent binding moiety.
In one preferred embodiment, the invention features dimeric or multimeric targeting constructs which include two or more KDR or VEGF/KDR complex-binding polypeptides which bind to different binding sites of KDR or the VEGF/KDR complex. Such polypeptides are described in detail in U.S. Ser. No. 60/360,851 and U.S. Ser. No. 60/440,441, both of which are incorporated by reference herein in their entirety, and in copending application U.S. Ser. No. 10/661,156, entitled “KDR and VEGF/KDR-binding peptides and their use in diagnosis and therapy,” in the name of Aaron Sato et al., filed on Sep. 11, 2003 and incorporated by reference herein in its entirety. These constructs are referred to herein as “KDR-targeting constructs.” The KDR-targeting constructs exhibit improved binding to KDR (e.g., increased specificity and/or affinity and/or avidity) compared to monomeric KDR- or VEGF/KDR complex-binding polypeptides, and compared to dimeric or multimeric constructs of a single KDR-binding polypeptide. These preferred compounds may be linked or conjugated to a detectable moiety and used to target these compositions to KDR-expressing cells, permitting imaging of KDR-expressing tissue.
In another preferred embodiment, the invention features dimeric or multimeric targeting constructs which include two or more cMet or HGF/cMet complex-binding polypeptides which bind to different binding sites of cMet or the HGF/cMet complex. Such polypeptides are described in detail in copending applications U.S. Ser. No. 60/451,588 and U.S. Ser. No. 10/792,582, entitled “Peptides that specifically bind HGF receptor (cMet) and uses thereof,” incorporated by reference herein in their entirety. These constructs are referred to herein as “cMet-targeting constructs.” The cMet-targeting constructs exhibit improved binding to cMet (e.g., increased specificity and/or affinity and/or avidity) compared to monomeric cMet or HGF/cMet complex-binding polypeptides, and compared to dimeric or multimeric constructs of a single cMet-binding polypeptide.
The cMet and KDR-targeting constructs of the invention may be linked or conjugated to a therapeutic agent and used to localize the therapeutic agent to cMet or KDR expressing tissue. Alternatively or additionally, the cMet or KDR-targeting constructs of the invention may also be used as therapeutics themselves, as described herein.
In particularly preferred embodiments, the KDR-targeting constructs of the invention include two or more of the following KDR and VEGF/KDR complex-binding polypeptides: SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:6, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:9, SEQ ID NO:10, SEQ ID NO:11, or SEQ ID NO:12.
In other preferred embodiments, the cMet-targeting constructs of the invention include two or more of the following binding polypeptides: SEQ ID NO:26, SEQ ID NO:27, SEQ ID NO:28, and/or SEQ ID NO:29.
In another embodiment, the invention provides a novel method for screening the KDR-targeting constructs for the ability to bind the target, and thus, identify multimeric constructs of KDR-binding polypeptides with improved binding (as determined, for example, by dissociation constants), as compared to binding of the constituent polypeptides. Additionally, the method of the invention allows for rapid determination of whether the multimeric targeting constructs will be stable in the presence of serum in vivo.
Constructs comprising two or more KDR or KDR/VEGF-binding polypeptides show improved ability to bind the target molecule compared to the corresponding monomeric binding polypeptides. For instance, as shown in Example 6 below, tetrameric constructs of KDR-binding polypeptides provided herein showed improved ability to bind KDR-transfected 293H cells. Combining two or more binding polypeptides in a single molecular construct appears to improve the avidity of the construct over the monomeric binding polypeptides a shown by a decrease in KD.
In addition, as demonstrated herein, constructs comprising two or more binding polypeptides specific for different epitopes of KDR and/or KDR/VEGF (e.g., “heteromeric” constructs) were made. Constructs comprising two or more binding polypeptide provided herein are expected to block multiple sites on KDR or VEGF/KDR. The heteromeric constructs show superior binding ability over both the corresponding monomers, as well as tetrameric constructs comprising multiple copies of the same binding polypetide. Furthermore, heteromeric constructs comprising two or more binding peptides specific for different epitopes were also able to efficiently bind KDR-transfected 293H cells. Thus, inclusion of two or more binding polypeptides that recognize different epitopes further improves the avidity of the construct for the target molecule, as demonstrated by a decrease in KD.
Heteromeric constructs of the binding polypeptides provided herein show improved ability to inhibit receptor tyrosine kinase function. Based on experiments described herein, dimeric and other multimeric constructs of the present invention comprising at least two binding polypeptides specific for different epitopes of KDR and/or KDR/VEGF are expected to inhibit the function of receptor tyrosine kinases. In particular, such constructs are expected to inhibit the function of VEGFR-2/KDR, VEGFR-1/Flt-1 and VEGFR-3/Flt-4. Additionally, heteromultimeric constructs of the invention comprising two or more binding moieties specific for different epitopes of cMet and/or cMet/HGF are expected to inhibit the function of receptor tyrosine kinases and, in particular the function of cMet.
For the purposes of the present invention, receptor tyrosine kinase function can include any one of: oligomerization of the receptor, receptor phosphorylation, kinase activity of the receptor, recruitment of downstream signaling molecules, induction of genes induction of cell proliferation, induction of cell migration, or combination thereof. For example, heteromeric constructs of binding polypeptides provided herein inhibit VEGF-induced KDR receptor inactivation in human endothelial cells, as demonstrated by the inhibition of VEGF-induced phosphorylation of the KDR receptor. In addition, heteromeric constructs of binding peptides provided herein inhibit VEGF-stimulated endothelial cell migration. As shown herein, targeting two or more distinct epitopes on KDR with a single binding construct greatly improves the ability of the construct to inhibit receptor function. Even binding peptides with weak ability-to block receptor activity can be used to generate heteromeric constructs having improved ability to block VEGF-induced receptor function. Indeed, heteromultimers of this invention can also be useful for treating vascular permeability events that can result when VEGF binds KDR. See, e.g., Example 30. In renal. failure it has been shown that anti-VEGF antibodies can reverse damage, and in a similar way the compounds of the invention can reverse renal permeability pathogenesis in, for example, diabetes.
Additionally, as further demonstrated herein, constructs comprising two or more binding polypeptides specific for different epitopes of cMet were made. Constructs containing two or more cMet-binding polypeptides provided herein are expected to block multiple sites on cMet. These heteromeric cMet-targeting constructs show superior binding ability over the corresponding monomers.
Therefore, the present. invention is drawn to constructs comprising two or more binding polypeptides. The multimeric constructs of the present invention comprise two or more binding polypeptides, such that at least two of the binding polypeptides in the construct are specific for different epitopes of a target, for example, KDR and/or KDR/VEGF and cMet and/or cMet/HGF. These constructs are also referred to herein as “heteromeric constructs,” “heterodimeric constructs,” “heterodimers,” “heteromultimers” and/or. “heteromultimeric constructs.” The constructs of the present invention can also include an unrelated, or control peptide or peptides. The constructs can include two or more, three or more, or four or more binding polypeptides. Based on the teachings provided herein, one of ordinary skill in the art is able to assemble the binding polypeptides provided herein into multimeric constructs and to select multimeric constructs having improved properties, such as improved ability to bind the target molecule, or improved ability to inhibit receptor tyrosine kinase function. Such multimeric constructs having improved properties are included in the present invention. Furthermore, the methods and teachings provided herein have been shown to allow for the improved binding to a variety of different targets (e.g., KDR and cMet), thus demonstrating the wide applicability of the present invention.
Selected KDR or VEGF/KDR-binding peptides corresponding to positive phage isolates were synthesized on solid phase using 9-fluorenylmethoxycarbonyl protocols and purified by reverse phase chromatography. The molecular weight of the peptides was confirmed by electrospray mass spectrometry, and peptides were quantified by absorbance at 280 nm, where appropriate. For synthesis, two N-terminal and two C-terminal amino acids from the phage vector sequence from which the peptide was excised were retained and a-Gly-Gly-Gly-Lys-NH2 linker was added to the C-terminus of each peptide. Peptides with selected lysine residues were protected, with the 1-(4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)-3-methybutyl (ivDde) protecting group, which allows selective coupling to the C-terminal lysine, and this group was not removed during peptide cleavage, but was removed after coupling with 2% hydrazine in DMF or 0.5 M hydroxylamine, at pH 8, in water.
Each peptide was labeled with a fluorescein-containing moiety on the C-terminal lysine using 5-carboxy- or 6-carboxy- or a mixture of 5-carboxy and 6-carboxy-fluorescein (as the N-hydroxysuccinimide ester derivative) or fluorescein isothiocyanate (FITC) in a 2% solution of DIEA in DMF. If the peptide contained an ivDde protected lysine, the reaction was quenched by the addition of 2% hydrazine, a compound that reacts with any remaining NHS-fluorescein and removes the internal protecting group. For all other peptides, the reaction was quenched by the addition of an equal volume of 0.5 M hydroxylamine, pH 8. The quenched reaction mixtures were then diluted with water until the composition contained less than 10% DMF, and then they were purified using C18 reverse phase chromatography, usually semipreparative or preparative C18-reverse phase HPLC. The peptides were characterized for purity and correct mass on an LC-MS system (HP1100 HPLC with an in-line SCIEX AP150 single quadrapole mass spectrometer).
1. Fluorescence Anisotropy Measurements and BiaCore Assays
Fluorescence anisotropy measurements were performed in 384-well microplates in a volume of 10 μL in binding buffer (PBS, 0.01% Tween-20, pH 7.5) using a Tecan Polarion fluorescence polarization plate reader. In some cases, heparin (0.5 μg/mL) or 10% human serum was added to the binding buffer. The concentration of fluorescein-labeled peptide was held constant (20 nM) and the concentration of KDR-Fc (or similar target) was varied. Binding mixtures were equilibrated for 10 minutes in the microplate at 30° C. before measurement. The observed change in anisotropy was fit to Equation (1) below via nonlinear regression to obtain the apparent KD. Equation (1) assumes that the synthetic peptide and HSA form a reversible complex in solution with 1:1 stoichiometry:
where robs is the observed anisotropy, rfree is the anisotropy of the free peptide, rbound is the anisotropy of the bound peptide, KD is the apparent dissociation constant, KDR is the total KDR concentration, and P is the total fluorescein-labeled peptide concentration.
KDR-Fc (or another protein target) was cross-linked to the dextran surface of a CM5 sensor chip by the standard amine coupling procedure (0.5 mg/mL solutions diluted 1:20 with 50 mM acetate, pH 6.0, RL KDR-Fc=12859). Experiments were performed in HBS-P buffer (0.01 M HEPES, pH 7.4, 0.15 M NaCl, 0.005% polysorbate 20 (v/v)). Peptide solutions quantitated by extinction coefficient were diluted to 400 nM in HBS-P. Serial dilutions were performed to produce 200, 100, 50, and 25 nM solutions. For association, peptides were injected at 20 μL/min for 1 minute using the kinject program. Following a 1-minute dissociation inteveral, any remaining peptide was stripped from the target surface with a quick injection of1IM NaCl for 25 sec. at 50 μL/min. All samples were injected in duplicate. Between each peptide series, a buffer injection and a non-target binding peptide injection served as additional controls. Sensorgrams were analyzed using the simultaneous ka/kd fitting program in the BIAevaluation software 3.1.
The following common abbreviations are used throughout this specification: 9-fluorenylmethyloxycarbonyl (fmoc or Fmoc), 1-hydroxybenozotriazole (HOBt), N,N′-diisopropylcarbodiimide (DIC), N-methylpyrrolidinone (NMP), acetic anhydride (Ac2O), (4,4-dimethyl-2,6-dioxocyclohex-1-ylidene)-3-methylbutyl (ivDde), trifluoroacetic acid (TFA), Reagent B (TFA:H2O:phenol:triisopropylsilane, 88:5:5:2), diisopropylethylamine (DIEA), O-(1H-benzotriazole-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (HBTU),O-(7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorphosphate (HATU), N-hydroxysuccinimide (NHS), solid phase peptide synthesis (SPPS), dimethyl sulfoxide (DMSO), dichloromethane (DCM), dimethylformamide (DMF), human serum albumin (HSA), and radiochemical purity (RCP).
1. Method 1 for ACT 357 MPS and ACT 496 MOS Synthesizers
The peptides were synthesized on NovaSyn TGR (Rink amide) resin (0.2 mmol/g) using either an Advanced ChemTech ACT 357 or an ACT 496 Synthesizer employing Fmoc peptide synthesis protocols, specifically using HOBt/DIC as the coupling reagents and NMP as the solvent. The Fmoc was removed by treating the Nova-Syn TGR (Rink amide-available from NovaBiochem, San Diego, Calif.) resin-bound peptide with 25% piperidine in DMF twice (4 min and 10 min). All amino acids were dissolved in NMP (DMF was added when the amino acid was not soluble in pure NMP). The concentration of the amino acid was 0.25 M, and the concentration for both HOBt and DIC was 0.5 M.
a. For a 0.04 mmol Scale Synthesis:
A typical amino acid coupling cycle (not including wash steps) was to dispense piperidine solution (2.4 mL) to each well and mix for 4 min, then empty all wells. NMP (320 μL), HOBt solution (320 μL, 4eq), amino acid (640 μL, 4eq) and DIC (320 μL, 4eq) solutions were dispensed to each well. The coupling time was 3 h; then the resin was washed. The cycle was repeated for each amino acid. After the last amino acid coupling, the resin-bound peptide was treated with 25% piperidine to remove the Fmoc protecting group. After washing, the resin bound peptide was capped with 1.0 M Ac2O (1.2 mL per well) and diisopropylethylamine in DMF, optionally including varying amounts of HOBt in the mixture for 30 min. The resin was washed first with methanol and then with dichloromethane and dried. Cleavage of the peptides from the resin and side-chain deprotection was accomplished using Reagent B for 4.5h. The cleavage solutions were collected and the resins were washing with an additional aliquot of Reagant B. The combined solutions were concentrated to dryness. Ether was added to the residue with swirling or stirring to precipitate the peptides. The ether was decanted, and solid was collected. This procedure was repeated 2-3 times to remove impurities. The crude peptides were dissolved in aqueous DMSO and water mixture, and purified by HPLC (column: Water's Associates XTerra C18, 19×50 mm using a gradient elution protocol; eluents: H2O with 0.1% TFA and CH3CN with 0.1% TFA; UV 220 nm; Flow rate: 50-60 mL/min). The solutions containing the desired peptides were lyophilized to give the desired peptides as white fluffy lyophilizates (>90% purity).
The purified linear di-cysteine containing peptides were dissolved in water, mixtures of water-acetonitrile, or mixtures of water-DMSO at concentrations between 0.1 mg/mL and 2.0 mg/mL. The choice of solvent was a function of the solubility of the crude peptide in the solvent. The pH of the solution was adjusted to 7.5-8.5 with aqueous ammonia, aqueous ammonium carbonate or aqueous ammonium bicarbonate. The mixture was stirred vigorously in air for 24-48 h. In the case of non-DMSO containing solvent. systems, the pH of the solution was adjusted to 2 with aqueous trifluoroacetic acid. The mixture was lyophilized to provide the crude cyclic disulfide containing peptide. The cyclic disulfide peptide was then dissolved to a volume of 1-2 mL in aqueous (0.1% TFA) containing a minimum of acetonitrile (0.1% TFA). The resulting solution was loaded onto a reverse phase column and the desired compound obtained by a gradient elution of acetonitrile into water, employing a C18, or C8 reverse phase semipreparative or preparative HPLC column. In the case of the DMSO-containing solutions, the solution was diluted until the DMSO concentration was minimal without precipitation of the peptide. The resulting mixture was quickly acidified to pH 2 with dilute trifluoroacetic acid and loaded onto the reverse phase HPLC system and purified as described. Fractions containing the desired materials were pooled and the peptides isolated by lyophilization.
2. Method 2 for ACT 357 MPS and ACT 496 MOS Synthesizers
The peptides were synthesized as in Method 1, with the following changes. HBTU/HOBt/DIEA were used as the coupling reagent and NMP as the solvent. A low load (˜2.0 mmol/g) Fmoc-GGGK(Boc)-NovSyn-TGR-resin prepared from the above-described Nova-Syn TGR resin was employed for peptides synthesis on 0.01 mmol scale synthesis.
a. For a 0.01 mmol Scale Synthesis:
After the Fmoc group was removed, a standard coupling procedure used a solution of HOBt (720 μL, 6 eq), amino acid (804 μL, 6.6 eq), HBTU (720 μL, 6 eq) and DIEA (798 μL, 13.3 eq). The mixture was agitated for 15 min, emptied and the resin washed. After all couplings and after cleavage and purification as above, the solutions containing desired linear peptides were lyophilized to give the peptides as white fluffy solids (>90% purity).
The crude ether-precipitated linear di-cysteine containing peptides were cyclized by dissolution in water, mixtures of aqueous acetonitrile (0.1% TFA), or aqueous DMSO and adjusting of the pH of the solution to 7.5-8.5 by addition of aqueous ammonia, aqueous ammonium carbonate, or aqueous ammonium bicarbonate solution. The peptide concentration was between 0.1 and 2.0 mg/mL. The mixture was stirred in air for 24-48 h, acidified to a pH of 2 with aqueous trifluoroacetic acid and then purified by preparative reverse phase HPLC employing a gradient of acetonitrile into water. Fractions containing the desired material were pooled and the peptides were isolated by lyophilization.
3. Method 3 for the ACT 496 MOS Synthesizer
The peptides were synthesized using an Advanced ChemTech ACT 496 MOS Synthesizer as in Method 1. The low load (˜0.2 mmol/g) GGGK(Boc)-NovaSyn-TGR resin was employed for peptide synthesis. The coupling solvent was NMP/DMSO 8:2. The synthesis was performed at a 0.02 mmol scale using a coupling time of 3h. The crude linear peptides were further processed as described above for Method 1.
Method 4 for the ACT 496 MOS Synthesizer
The peptides were synthesized using method 3 on the ACT 496 with HBTU/DIEA as the coupling reagents, and NMP as the solvent. 2,4,6-collidine as a 1 M solution was used as the base. The low load Fmoc-GGGK(ivDde)-Novsyn-TGR resin (˜0.2 mmol/g) was used for peptide synthesis. The coupling time was 30 minutes. The crude linear peptides were further processed as described above for Method 1.
5. Method 5 for the ABI 433A Synthesizer
Synthesis of peptides was carried out on a 0.25 mmol scale using the FastMoc protocol (Applied Biosystems Inc.). In each cycle of this protocol, 1.0 mmol of a dry protected amino acid in a cartridge was dissolved in a solution of 0.9 mmol of HBTU, 2 mmol of DIEA, and 0.9 mmol of HOBt in DMF with additional NMP added. The peptides were made using 0.1 mmol of NovaSyn TGR (Rink amide) resin (resin substitution 0.2 mmol/g). The coupling time in this protocol was 21 min. Fmoc deprotection was carried out with 20% piperidine in NMP. At the end of the last cycle, the synthesized peptide was acetylated using acetic anhydride/DIEA/HOBt/NMP. The peptide resin was washed and dried for further manipulations or cleaved from the resin (using Reagent B). Generally, the cleaved peptides were cyclized, as in Method 1, above.
6. Method 6 for Biotinylation of Resin Bound Peptides
The peptides were prepared by Method 5. The ivDde protecting group on the C-terminal lysine was selectively removed by treatment with 10% hydrazine in DMF. The resin was then treated with a solution of Biotin-N-hydroxysuccinimidyl ester in DMF in the presence of DIEA. After washing, the resin was dried and cleavage was performed using Reagent B. The resin was filtered off and the filtrate concentrated to dryness. The biotinylated peptide was dissolved in neat DMSO or in aqueous DMSO, and treated with DIEA and stirred for 4-6 h to effect disulfide cyclization. The crude mixture was purified by preparative HPLC.
In a typical experiment, 200 mg of the resin-bound peptide was treated with 10% hydrazine in DMF (2×20 mL) and washed with DMF (2×20 mL) and then with dichloromethane (1×20 mL). The resin was resuspended in DMF (10 mL) and treated with a solution of Biotin-NHS ester (0.2 mmol, 5 equivalent) and DIEA (0.2 mmol) and the resin was mixed with the reagents for 4 h. The completion of the reaction was checked by the ninhydrin test. The peptide was then released from the resin by treatment with Reagent B (10 mL) for 4 h. The resin was filtered off, Reagent B was removed in vacuo and the peptide was precipitated by addition of anhydrous ether. The solid formed was collected, washed with ether and dried. The solid was dissolved in anhydrous DMSO and the mixture was adjusted to pH 7.5 with DIEA and stirred for 4-24 h to effect disulfide cyclization. The disulfide cyclization reaction was monitored by analytical HPLC. After completion of the cyclization, the mixture solution was diluted with 25% acetonitrile in water and directly purified by HPLC on reverse phase C-18 column using a gradient of acetonitrile into water (both containing 0.1% TFA). Fractions were analyzed by analytical HPLC and those containing the pure product were collected and lyophilized to provide the required biotinylated peptide.
7. Method 7 for Biotinylation of Purified Peptides
The purified peptide (10 mg, prepared by methods 1-5) containing a free amino group was dissolved in anhydrous DMF or DMSO (1 mL) and Biotin-NHS ester of (5 equivalents) and DIEA (5 equivalents) were added. The reaction was monitored by HPLC and after the completion of the reaction (1-2 h), the crude reaction mixture was directly purified by preparative HPLC. Fractions were analyzed by analytical HPLC and those containing the pure product were collected and lyophilized to obtain the required biotinylated peptide.
8. Method 8 for Biotinylation of Resin Bound Peptides Containing Linkers
In a typical experiment, 400 mg of the resin-bound peptide (made using the ABI-433 A Synthesizer and bearing an ivDde-protected lysine) was treated with 10% hydrazine in DMF (2×20 mL). The resin was washed with DMF (2×20 mL) and DCM (1×20 mL). The resin was resuspended in DMF (10 mL) and treated with Fmoc-aminodioxaoctanoic acid (0.4 mmol), HOBt (0.4 mmol), DIC (0.4 mmol), DIEA (0.8 mmol) with mixing for 4 h. After the reaction, the resin was washed with DMF (2×10 ml) and with DCM (1×10 mL). The resin was then treated with 20% piperidine in DMF (2×15 mL) for 10 min each time. The resin was washed and the coupling with Fmoc-diaminodioxaoctanoic acid and removal of the Fmoc protecting group were repeated once more. The resulting resin, containing a peptide with a free amino group, was treated with a solution of Biotin-NHS ester (0.4 mmol, 5 equivalent) and DIEA (0.4 mmol, 5 equivalents) in DMF for 2 h. The peptide-resin was washed and dried as described previously and then treated with Reagent B (20 mL) for 4 h. The mixture was filtered and the filtrate concentrated to dryness. The residue was stirred with ether to produce a solid that was collected, washed with ether, and dried. The solid was dissolved in anhydrous DMSO and the pH adjusted to pH 7.5 with DIEA. The mixture was stirred for 4-6 h to effect the disulfide cyclization reaction which was monitored by analytical HPLC. After the completion of the cyclization, the DMSO solution was diluted with 25% acetonitrile in water and applied directly to a reverse phase C-18 column. Purification was effected using a gradient of acetonitrile into water (both containing 0.1% TFA). Fractions were analyzed by analytical HPLC, and those containing the pure product were collected and lyophilized to provide the required biotinylated peptide.
9. Method 9 for Formation of 5-Carboxyfluorescein Labeled Peptides
Peptide-resin obtained via from Method 5, containing an ivDde protecting group on the epsilon nitrogen of lysine, was mixed with a solution of hydrazine in DMF (10% hydrazine/DMF, 2×10 mL, 10 min) to remove the ivDde group. The epsilon nitrogen of the lysine was labeled with fluorescein-5-isothiocyanate (0.12 mmol) and diisopropylethylamine (0.12 mmol) in DMF. The mixture was agitated for 12 h (fluorescein-containing compounds were protected from light). The resin was then washed with DMF (3×10 mL) and twice with CH2Cl2 (10 mL) and dried under nitrogen for 1 h. The peptide was cleaved from the resin using Reagent B for 4 h and the solution collected by filtration. The volatiles were removed under reduced pressure and the residue was dried under vacuum. The peptide was precipitated with ether, collected and the precipitate was dried under a stream of nitrogen. The precipitate was added to water (1 mg/mL) and the pH of the mixture was adjusted to 8 with 10% aqueous meglumine. Cyclization of the peptide was carried out for 48 h and the solution was freeze-dried. The crude cyclic peptide was dissolved in water and purified by RP-HPLC on a C18 column with linear gradient of acetonitrile into water (both phases contained 0.1% TFA). Fractions containing the pure product were collected and freeze dried. The peptides were characterized by positive ion or negative ion ESI-MS and the purity was determined by RP-HPLC (linear gradient of acetonitrile into water/0.1% TFA).
10. Method 10A for Preparation of Peptidic Chelate for Binding to Tc By Coupling of Single Amino Acids
Peptides were synthesized starting with 0.1 mmol of NovaSyn-TGR resin (0.2 mmol/g substitution). Deprotected (ivDde) resin was then treated according to the protocol A for the incorporation of Fmoc-Gly-OH, Fmoc-Cys(Acm)-OH and, Fmoc-Ser(tBu)-OH.
Protocol A for manual coupling of single amino acid:
1. Treat with 4 equivalents of the corresponding Fmoc-amino acid, 4.1 equivalents of N-hydroxy benzotriazole and 4. 1 equivalents of HOB and 4.1 equivalents of DIC for 5 h.
2. Wash with DMF (3×10 mL)
3. Treat with 20% piperidine in DMF (2×10 mL, 10 min)
4. Wash with DMF (3×10 mL).
The Fmoc-protected peptide loaded resin was then treated with 20% piperidine in DMF (2×10 mL, 10 min) and washed with DMF (3×10 mL). A solution of N,N-dimethylglycine (0.11 mmol), HATU (1 mmol), and DIEA (0.11 mmol) in DMF (10 mL) was then added to the peptide loaded resin and the manual coupling was continued for 5 h. After the reaction the resin was washed with DMF (3×10 mL) and CH2Cl2 (3×10 mL) and dried under vacuum.
11. Method 10B for Preparation of Peptidic Chelate for Binding to Tc By Appendage of the Glutaryl-PnAO6 Chelator to the Peptide—Preparation of 4-{2-(2-Hydroxyimino-1,1-dimethylpropylamino)-1-[(2-hydroxyimino-1,1-dimethyl-propylamino)-methyl]-ethylcarbamoyl}-butyric Acid N-hydroxysuccinimide Ester—Compound B
4-{2-(2-Hydroxyimino-1,1-dimethyl-propylamino)-1-[(2-hydroxyimino-1,1-dimethyl-propylamino)-methyl]-ethylcarbamoyl}-butyric acid (Compound A) (40 mg) was dissolved in DMF (700 μL). N-Hydroxysuccinimide (1.5 equiv, 17.2 mg) and 1,3-diisopropylcarbodiimide (1.5 equiv, 24 μL) were added. The progress of the reaction was monitored by mass spectroscopy. After 17 h, the reaction was complete. The volatiles were removed in vacuo and the residue was washed with ether (5×) to remove the unreacted NHS. The residue was dried to provide Compound B, which was used directly without further treatment or purification.
Functionalization of Peptides with 4-{2-(2-Hydroxyimino-1,1-dimethylpropylamino)-1-[(2-hydroxyimino-1,1-dimethyl-propylamino)-methyl]-ethylcarbamoyl}-butyric acid, N-hydroxysuccinimide ester—(Compound B)
The peptide (prepared, for example, by Methods 1-13) was dissolved in DMF and treated with Compound B and DIEA sufficient to maintain the basicity of the mixture. The progress of the reaction was monitored by HPLC and mass spectroscopy. At completion of the reaction the volatiles were removed in vacuo and the residue was either purified by reverse phase HPLC, or processed further by selective removal of side chain protecting groups, or subjected to cleavage of all remaining protecting groups as required by the next steps in the synthesis scheme.
12. Method 11 for Formation of Mercapto-Acetylated Peptides Using S-Acetylthioglycolic Acid N-Hydroxysuccinimide Ester
To a solution of a peptide (0.005 mmol, obtained from Methods 1-5 with a free amine) in DMF (0.25 mL) was added S-acetylthioglycolic acid N-hydroxysuccinimide ester (SATA) (0.0055 mmol) and the reaction mixture was stirred at ambient temperature for 6 h. The volatiles were removed under vacuum and the residue was purified by preparative HPLC using a gradient elution of acetonitrile into water, both containing 0.1% TFA. Fractions containing the pure product were collected and freeze-dried to yield the mercaptoacetylated peptide. The mercaptoacetylated peptide was characterized by ESI-MS and the purity was determined by reverse phase PHLC analysis employing a linear gradient of acetonitrile into water (both containing 0.1% TFA).
13. Method 12 for Formation of Mercaptoacetylated Peptide Using S-Acetylthioglycolic Acid
Purified peptides from Method 5, after disulfide cyclization, were coupled with S-acetylthioglycolic acid (1.5-10 eq.)/HOBt (1.5-10 eq.)/DIC (1.5-10 eq.) in NMP for 2-16 h at room temperature. The mixture was then purified by preparative HPLC and the fractions containing pure peptide combined and lyophilized. In the case of compounds with another lysine protected by an ivDde group, the deprotection reaction employed 2% hydrazine in DMSO for 3 h at room temperature. Purification of the reaction mixture afforded pure peptide.
In the case of preparing a compound with S-acetylthioglycolic acid coupled to two aminodioxaoctanoic acid groups and the peptide, the purified peptide from Method 5 having a free amino group, was coupled to AcSCH2—CO—(NH—CH2—CH2—O—CH2—CH2—O—CH2—CO)2—OH (30 eq.)/HOBt (30 eq.)/DIC (30 eq.) in NMP for 40 h at room temperature. The mixture was purified and the ivDde group was removed. A second purification gave the final product as a white lyophilizate.
Alternatively Fmoc aminodioxaoctanoic acid was coupled twice successively to the peptide (produced by method 5) followed by Fmoc removal and coupling to S-acetylthioglycolic acid.
14. Method 13 for Preparation of Homodimers and Heterodimers
The required purified peptides were prepared by SPPS using Method 5. To prepare homodimers, half of the peptide needed to prepare the dimer was dissolved in DMF and treated with 10 equivalents of glutaric acid bis N-hydoxysuccinimidyl ester. The progress of the reaction was monitored by HPLC analysis and mass spectroscopy. At completion of the reaction, the volatiles were removed in vacuo and the residue was washed with ethyl acetate to remove the unreacted bis-NHS ester. The residue was dried, re-dissolved in anhydrous DMF and treated with another half portion of the peptide in the presence of 2 equivalents of DIEA. The reaction was allowed to proceed for 24 h. This mixture was applied directly to a Waters Associates C-18 XTerra RP-HPLC column and purified by elution with a linear gradient of acetonitrile into water (both containing 0.1% TFA).
In the case of heterodimers, one of the monomers was reacted with the bis NHS ester of glutaric acid and after washing off the excess of bis NHS ester, the second amine was added in the presence of DIEA. After the reaction, the mixture was purified by preparative HPLC.
a. Preparation of KDR and VEGF/KDR Complex-Binding Polypeptides
Utilizing the methods described above, the KDR and VEGF/KDR complex-binding polypeptides in Table 1a were prepared. As used in Table 1a, the letter “J” in the peptide sequences refers to the spacer or linker group, 8-amino-3,6-dioxaoctanoyl. Also as used in Table 1, the designation “C*” refers to a cysteine residue that contributes to a disulfide bond. The ability of the biotinylated polypeptides to bind to KDR was assessed using the assay set described below.
The following biotinylated peptides bound well to the KDR-expressing cells: P13-XB (KD 1.81 nM+/−0.27), P5-XB (KD 14.87+/−5.07 nM, four experiment average), P6-XB (KD 10.00+/−2.36 nM, four experiment average), P12-XB (KD 4.031+/−0.86 nM, three experiment average), P6-F-XB (KD 6.94+/−1.94 nM, one experiment), and P12-F-XB (KD 3.02+/−0.75 nM, one experiment).
NH2
NH2
NH2
NH2
NH2
NH2
b. Library Screening Against KDR and KDR/VEGF Complex Targets
Chimeric fusions of Ig Fc region with human KDR (#357-KD-050), murine KDR (#443-KD-050), human VEGFR-1 (#321-FL-050), human VEGFR-3 (#349-F4-050), and human Trail R4 (#633-TR-100) were purchased in carrier-free form (no BSA) from R & D Systems (Minneapolis, Minn.). Trail R4 Fc is an irrelevant Fc fusion protein with the same Fc fusion region as the target Fc fusion (KDR Fc) and was used to deplete the libraries of Fc binders. VEGF165 (#100-20) was purchased in carrier-free form from Peprotech (Rocky Hill, N.J.). Protein A Magnetic Beads (#100.02) were purchased from Dynal (Oslo, Norway). Heparin (#H-3393) was purchased from Sigma Chemical Company (St. Louis, Mo.). A 2-component tetramethyl benzidine (TMB) system was purchased from KPL (Gaithersburg, Md.).
In the following procedures, microtiter plates were washed with a Bio-Tek 404 plate washer (Winooski, Vt.). ELISA signals were read with a Bio-Tek plate reader (Winooski, Vt.). Agitation of 96-well plates was on a LabQuake shaker (Labindustries, Berkeley, Calif.).
Eight M13 phage display libraries were prepared for screening against immobilized KDR and VEGF/KDR targets: Cyclic peptide display libraries TN6/VI, TN7/IV, TN8/IX, TN9/IV, TN10/IX, TN12/I, and MTN13/I, and a linear display library, Lin20. The design of these libraries has been described, supra.
The DNA encoding the library was synthesized with constant DNA on either side so that the DNA could be PCR amplified using Taq DNA polymerase (Perkin-Elmer, Wellesley, Mass.), cleaved with NcoI and PstI, and ligated to similarly cleaved phage display vector. XL1-Blue MFR′ E. coli cells were transformed with the ligated DNA. All of the libraries were constructed in same manner.
c. KDR Selection Protocol in the Presence of Heparin
Protein A Magnetic Beads were blocked once with 1×PBS (pH 7.5), 0.01% Tween-20, 0.1% HSA (Blocking Buffer) for 30 minutes at room temperature and then washed five times with 1×PBS (pH 7.5), 0.01% Tween-20, 5 μg/mL heparin (PBSTH Buffer).
The cyclic peptide, or “constrained loop,” libraries were pooled for the initial screening into two pools: TN6/VI, TN7/IV and TN8/IX were in one pool; TN9/IV, TN10/IX and TN12/I were in the second pool. The two pooled libraries and the linear library (Lin20) were depleted against Trail R4 Fc fusion (an irrelevant Fc fusion) and then selected against KDR Fc fusion. 1011 plaque forming units (pfu) from each library per 100 μL PBSTH were pooled together; e.g., 3 pooled libraries would result in a total volume of ˜350 μl in PBSTH.
To prepare the irrelevant Fc fusion beads, 500 μl of Trail R4-Fc fusion (0.1 μg/μl stock in PBST (no heparin)) were added to 1000 μl of washed, blocked protein A magnetic beads. The fusion was allowed to bind to the beads overnight with agitation at 4° C. The next day, the magnetic beads were washed 5 times with PBSTH. Each phage pool was incubated with 50 μl of Trail R4 Fc fusion beads on a Labquake shaker for 1 hour at room temperature (RT). After incubation, the phage supernatant was removed and incubated with another 50 μL of Trail R4 beads. This was repeated for a total of 5 rounds of depletion, to remove non-specific Fc fusion and bead binding phage from the libraries.
To prepare the KDR target beads, 500 μL of KDR-Fc fusion (0.1 μg/μL stock in PBST (no heparin)) were added to 500 μL of washed, blocked beads. The KDR-Fc fusion was allowed to bind overnight with agitation at 4° C. The next day, the beads were washed 5 times with PBSTH. Each depleted library pool was added to 100 μL of KDR-Fc beads and allowed to incubate on a LabQuake shaker for 1 hour at RT. Beads were then washed as rapidly as possible with 5×1 mL PBSTH using a magnetic stand (Promega) to separate the beads from the wash buffer. Phage still bound to beads after the washing were eluted once with 250 μl of VEGF (50 μg/mL, ˜1 μM) in PBSTH for 1 hour at RT on a LabQuake shaker. The 1-hour elution was removed and saved. After the first elution, the beads were incubated again with 250 μl of VEGF (50 μg/mL, ˜1 μM) overnight at RT on a LabQuake shaker. The two VEGF elutions were kept separate and a small aliquot taken from each for titering. Each elution was mixed with an aliquot of XL1-Blue MRF′ (or other F′ cell line) E. coli cells that had been chilled on ice after having been grown to mid-logarithmic phase. The remaining beads after VEGF elution were also mixed with cells to amplify the phage still bound to the beads, i.e., KDR-binding phage that had not been competed off by the two VEGF incubations (1-hour and overnight (O/N) elutions). After approximately 15 minutes at room temperature, the phage/cell mixtures were spread onto Bio-Assay Dishes (243×243×18 mm, Nalge Nunc) containing 250 mL of NZCYM agar with 50 μg/mL of ampicillin. The plate was incubated overnight at 37° C. The next day, each amplified phage culture was harvested from its respective plate. Over the next day, the input, output and amplified phage cultures were titered for FOI (i.e., Fraction of Input=phage output divided by phage input).
In the first round, each pool yielded three amplified eluates. These eluates were panned for 2-3 more additional rounds of selection using ˜1010 input phage/round according to the same protocol as described above. For each additional round, the KDR-Fc beads were prepared the night before the round was initiated. For the elution step in subsequent rounds, the amplified elution re-screen on KDR-Fc beads was always eluted in, the same manner, and all other elutions were treated as washes. For example, for the amplified elution recovered by using the still-bound beads to infect E. coli, the 1-hour and overnight VEGF elutions were performed and then discarded as washes. Then the beads were used to again infect E. coli and produce the next round amplified elution. Using this procedure, each library pool only yielded three final elutions at the end of the selection. Two pools and one linear library, therefore, yielded a total of 9 final elutions at the end of the selection.
This selection procedure was repeated for all libraries in the absence of heparin in all binding buffers, i.e., substituting PBST (PBS (pH 7.5); 0.01% Tween-20) for PBSTH in all steps.
d. KDR Selection Protocol in the Absence of Heparin
A true TN11/1 library was used to screen for KDR binders. The same selection protocol as above (KDR Selection Protocol in the Presence of Heparin) was used, except heparin was omitted. The three elution conditions were VEGF elution (1 uM; 1 hr; same as original protocol), Dimer D6 elution (0.1 uM; 1 hr), and then bead elution (same as above). TN11/1 alone was used in the selection and screening. For selected peptides, see [FIGS. 40A-40R.]
The following experiments were performed to assess the ability of KDR-binding peptides to bind to KDR-expressing cells. In this experiment, KDR-binding peptides P5-B and P5-XB and P6-B and P6-XB were conjugated to fluorescent beads and their ability to bind to KDR-expressing 293H cells was assessed. The experiments show that both peptide sequences can be used to bind particles such as beads to KDR-expressing sites. In general, the P6 peptides exhibited better binding to the KDR-expressing cells than P5. However, the binding of both peptides improved with the addition of a spacer.
1. Biotinylation of an Anti-KDR Antibody
Anti-KDR from Sigma (V-9134), as ascites fluid, was biotinylated using a kit from Molecular Probes (F-6347) according to the manufacturer's instructions. Preparation of peptide-conjugated fluorescent beads
0.1 mL of a 0.2 mM stock solution of each biotinylated peptide (prepared as set forth above, in 50% DMSO) was incubated with 0.1 mL of Neutravidin-coated red fluorescent microspheres (2 micron diameter, custom-ordered from Molecular Probes) and 0.2 mL of 50 mM MES (Sigma M-8250) buffer, pH 6.0 for 1 hour at room temperature on a rotator. As a positive control, biotinylated anti-KDR antibody was incubated with the Neutravidin-coated beads as above, except that 0.03 mg of the biotinylated antibody preparation in PBS (Gibco 14190-136) was used instead of peptide solution. Beads can be stored at 4° C. until needed for up to 1 week.
2. Transfection of 293H Cells
293H cells were transfected using the protocol described in Example 6. Transfection was done in black/clear 96-well plates (Becton Dickinson, cat. # 354640). The cells in one half of the plate (48 wells) were mock-transfected (with no DNA) and those in the other half of the plate were transfected with KDR cDNA. The cells were 80-90% confluent at the time of transfection and completely confluent the next day, at the time of the assay; otherwise the assay was aborted.
3. Binding Assay
From the above bead preparations, 0.12 mL was spun for 10 minutes at 2000 rpm in a microcentrifuge at room temperature. The supernatant was removed and 0.06 mL of MES pH 6.0 was added. Each bead solution was then vortexed and sonicated in a water bath 15 min. To 1.47 mL of DMEM, high glucose (GIBCO 11965-084) with 1×MEM Non-Essential Amino Acids Solution (NEAA) (GIBCO 11140-050) and 40% FBS (Hyclone SH30070.02) 0.03 mL of the sonicated bead preparations was added. 96-well plates seeded with 293H cells which have been mock-transfected in columns 1 to 6, and KDR-transfected in columns 7 to 12 (as described above), were drained and washed once with DMEM, high glucose with 1×NEAA and 40% FBS. To each well was added 0.1 mL of bead solution, six wells per bead preparation. After incubating at room temperature for 30 minutes, the wells were drained by inverting the plates and washed four times with 0.1 mL PBS with Ca++Mg++ (GIBCO 14040-117) with shaking at room temperature for 5 minutes each wash. After draining, 0.1 mL of PBS was added per well. The plates were then read on a Packard FluoroCount fluorometer at excitation 550 nm/emission 620 nm. Unconjugated Neutravidin beads were used as a negative control while beads conjugated with a biotinylated anti-KDR antibody were used as the positive control for the assay.
To calculate the number of beads bound per well, a standard curve with increasing numbers of the same fluorescent beads was included in each assay plate. The standard curve was used to calculate the number of beads bound per well based on the fluorescence intensity of each well.
As shown in
The following experiment assesses the ability of KDR-binding peptides to compete with 125I-labeled VEGF for binding to KDR expressed by transfected 293H cells. While KDR-binding polypeptide P4 did not compete significantly with 125I-labeled VEGF, P5-XB, P6 and P12-XB competed very well with 125I-labeled VEGF, inhibiting 96.29±2.97% and 104.48±2.07% of 125I-labeled VEGF binding.
1. Transfection of 293H Cells
293H cells were transfected using the protocol described in Example 6. Transfection was done in black/clear 96-well plates (Becton Dickinson, cat. # 354640). The cells in one half of the plate (48 wells) were mock-transfected (with no DNA) and those in the other half of the plate were transfected with KDR cDNA. The cells were 80-90% confluent at the time of transfection and completely confluent the next day, at the time of the assay; otherwise the assay was aborted.
2. Preparation of M199 Media
To prepare M199 medium for the assay, one M199 medium packet (GIBCO, cat. # 31100-035), 20 mL of 1 mM HEPES (GIBCO, cat. #15630-080), and 2 g of DIFCO Gelatin (DIFCO, cat. # 0143-15-1) were added to 950 mL of double distilled (dd) H2O and the pH of the solution was adjusted to 7.4 by adding approximately 4 mL of 1N NaOH. After pH adjustment, the M199 medium was warmed to 37° C. in a water bath for 2 h to dissolve the gelatin, then filter sterilized using 0.2 μm filters (Corning, cat. # 43109), and stored at 4° C. to be used later in the assay.
3. Preparation of Peptide Solutions
3 mM stock solutions of peptides P6, P4, P5-XB, and P12-XB, (prepared as described above) in 50% DMSO were prepared.
4. Preparation of 125I-Labeled VEGF Solution for the Assay
25 μCi of lyophilized 125I-labeled VEGF (Amersham, cat. # IM274) were reconstituted with 250 μL of ddH2O to create a stock solution, which was stored at −80° C. for later use. For each assay, a 300 pM solution of 125I-labeled VEGF was made fresh by diluting the above stock solution in M199 medium. The concentration of 125I-labeled VEGF was calculated daily based on the specific activity of the material on that day.
5. Preparation of 30 μM and 0.3 μM Peptide Solution in 300 pM 125I-Labeled VEGF
For each 96 well plate, 10 mL of 300 pM 125I-labeled VEGF in M199 medium was prepared at 4° C. Each peptide solution (3 mM, prepared as described above) was diluted 1:100 and 1:10000 in 300 μL of M199 media with 300 pM 125I-labeled VEGF to prepare 30 μM and 0.3 μM peptide solutions containing 300 pM of 125I-labeled VEGF. Once prepared, the solutions were kept on ice until ready to use. The dilution of peptides in M199 media containing 300 pM 125I-labeled VEGF was done freshly for each experiment.
6. Assay to Detect Competition with 125I-labeled VEGF in 293H Cells
Cells were used 24 h after transfection, and to prepare the cells for the assay, they were washed 3 times with room temperature M199 medium and placed in the refrigerator. After 15 minutes, the M199 medium was removed from the plate and replaced with 75 μL of 300 pM 125I-labeled VEGF in M199 medium (prepared as above). Each dilution was added to three separate wells of mock and KDR transfected cells. After incubating at 4° C. for 2 h, the plates were washed 5 times with cold binding buffer, gently blotted dry and checked under a microscope for cell loss. 100 μL of solubilizing solution (2% Triton X-100, 10% Glycerol, 0.1% BSA) was added to each well and the plates were incubated at room temperature for 30 minutes. The solubilizing solution in each well was mixed by pipeting up and down, and transferred to 1.2 mL tubes. Each well was washed twice with 100 μL of solubilizing solution and the washes were added to the corresponding 1.2 mL tube. Each 1.2 mL tube was then transferred to a 15.7 mm×10 cm tube to be counted in an LKB Gamma Counter (125I window for 1 minute).
7. Competition of Peptides with 125I-Labeled VEGF in 293H Cells
The ability of KDR-binding peptides P6, P4, P5-XB, and P12-XB, to specifically block 125I-labeled VEGF binding to KDR was assessed in mock-transfected and KDR-transfected cells. P4 was used in the assay as a negative control. It was selected because it exhibits only poor binding to KDR in FP assays, and thus would not be expected to displace or compete with VEGF. To calculate the specific binding to KDR, the binding of 125I-labeled VEGF to mock-transfected cells was subtracted from KDR-transfected cells. Therefore, the binding of 125I-labeled VEGF to sites other than KDR (which may or may not be present in 293H cells) is not included when calculating the inhibition of 125I-labeled VEGF binding to 293H cells by KDR-binding peptides.
As shown in
The ability of KDR-binding peptides identified by phage display to inhibit VEGF induced activation (phosphorylation) of KDR was assessed using the following assay. A number of peptides of the invention were shown to inhibit activation of KDR in monomeric and/or tetrameric constructs, including P5-D, P6-D, P10-D and P11-D. As discussed above, peptides that inhibit activation of KDR may be useful as anti-angiogenic agents.
Human umbilical vein endothelial cells (HUVECs) (Biowhittaker Cat No. CC-2519) were obtained frozen on dry ice and stored in liquid nitrogen until thawing. These cells were thawed, passaged, and maintained as described by the manufacturer in EGM-MV medium (Biowhittaker Cat No. CC-3125). Cells seeded into 100 mm dishes were allowed to become confluent, then cultured overnight in basal EBM medium lacking serum (Biowhittaker Cat No. CC-3121). The next morning, the medium in the dishes was replaced with 10 mL fresh EBM medium at 37° C. containing either no additive (negative control), 5 ng/mL VEGF (Calbiochem Cat No. 676472 or Peprotech Cat No. 100-20) (positive control), or 5 ng/mL VEGF plus the indicated concentration of the KDR-binding peptide (prepared as described above). In some cases, a neutralizing anti-KDR antibody (Cat No. AF357, R&D Systems) was used as a positive control inhibitor of activation. In such cases, the antibody was pre-incubated with the test cells for 30 min at 37° C. prior to the addition of fresh medium containing both VEGF and the antibody. After incubating the dishes 5 min in a 37° C. tissue culture incubator, they were washed three times with ice-cold Dulbecco's phosphate buffered saline (D-PBS) containing calcium and magnesium and placed on ice without removing the last 10 mL of D-PBS. The first dish of a set was drained and 0.5 mL of Triton lysis buffer was added (20 mM Tris base pH 8.0, 137 mM NaCl, 10% glycerol, 1% Triton X-100, 2 mM EDTA (ethylenediaminetetraacetic acid), 1 mM PMSF (phenylmethylsulfonylfluoride), 1 mM sodium orthovanadate, 100 mM NaF, 50 mM sodium pyrophosphate, 10 μg/mL leupeptin, 10 μg/mL aprotinin). The cells were quickly scraped into the lysis buffer using a cell scraper (Falcon, Cat No. 353087), dispersed by pipeting up and down briefly, and the resulting lysate was transferred to the second drained dish of the pair. Another 0.5 mL of lysis buffer was used to rinse out the first dish, then transferred to the second dish, which was then also scraped and dispersed. The pooled lysate from the two dishes was transferred to a 1.5 mL Eppindorf tube. The above procedure was repeated for each of the controls and test samples (KDR-binding peptides), one at a time. The lysates were stored on ice until all of the samples had been processed. At this point samples were either stored at −70° C. or processed to the end of the assay without interruption.
The lysates, either freshly prepared or frozen and thawed, were precleared by adding 20 μL of protein A-sepharose beads (Sigma 3391, preswollen in D-PBS), washed three times with a large excess of D-PBS, reconstituted with 6 mL D-PBS to generate a 50% slurry) and rocked at 4° C. for 30 min. The beads were pelleted by centrifugation for 2 min in a Picofuge (Stratgene, Cat No. 400550) at 2000×g and the supernatants transferred to new 1.5 mL tubes. 20 μg of anti-Flk-1 antibody (Santa Cruz Biotechnology, Cat No. sc-504) was added to each tube, and the tubes were incubated overnight (16-18 h) at 4° C. on a rotator to immunoprecipitate KDR. The next day 40 μL of protein A-sepharose beads were added to the tubes, which were then incubated at 4° C. for 1 h on a rotator. The beads in each tube were subsequently washed three times by centrifuging for 2 min in a Picofuge, discarding the supernatant, and dispersing the beads in 1 mL freshly added TBST buffer (20 mM Tris base pH 7.5, 137 mM NaCl, and 0.1% Tween 20). After centrifuging and removing the liquid from the last wash, 40 μL of Laemmli SDS-PAGE sample buffer (Bio-Rad, Cat No. 161-0737) was added to each tube and the tubes were capped and boiled for 5 min. After cooling, the beads in each tube were pelleted by centrifuging and the supernatants containing the immunoprecipitated KDR were transferred to new tubes and used immediately or frozen and stored at −70° C. for later analysis.
Detection of phosphorylated KDR as well as total KDR in the immunoprecipitates was carried out by immunoblot analysis. Half (20 μL) of each immunoprecipitate was resolved on a 7.5% precast Ready Gel (BioRad, Cat No. 161-1154) by SDS-PAGE according to the method of Laemmli (U. K. Laemmli “Cleavage of structural proteins during assembly of the head of bacteriophage T4.” Nature (1970); 227, 680-685).
Using a Bio-Rad mini-Protean 3 apparatus (Cat No. 165-3302). The resolved proteins in each gel were electroblotted to a PVDF membrane (Bio-Rad, Cat. No. 162-0174) in a Bio-Rad mini Trans-Blot cell (Cat No. 170-3930) in CAPS buffer (10 mM CAPS, Sigma Cat No. C-6070, 1% ACS grade methanol, pH 11.0) for 2 h at 140 mA according to the method of Matsudaira (P. Matsudaira. “Sequence from picomole quantities of proteins electroblotted onto polyvinylidine diflouride membranes.” J. Biol. Chem. (1987); 262, 10035-10038). Blots were blocked at room temperature in 5% Blotto-TBS (Pierce Cat No. 37530) pre-warmed to 37° C. for 2 h. The blots were first probed with an anti-phosphotyrosine antibody (Transduction Labs, Cat No. P11120), diluted 1:200 in 5% Blotto-TBS with 0.1% Tween 20 added for 2 h at room temp. The unbound antibody was removed by washing the blots four times with D-PBS containing 0.1% Tween 20 (D-PBST), 5 min per wash. Subsequently, blots were probed with an HRP-conjugated sheep anti-mouse antibody (Amersham Biosciences Cat No. NA931) diluted 1:25,000 in 5% Blotto-TBS with 0.1% Tween 20 added for 1 h at room temperature, and washed four times with D-PBST. Finally, the blots were incubated with 2 mL of a chemiluminescent substrate (ECL Plus, Amersham Cat No. RPN2132) spread on top for 2 min, drip-drained well, placed in plastic sheet protector (C-Line Products, Cat.No. 62038), and exposed to X-ray film (Kodak BioMax ML, Cat No. 1139435) for varying lengths of time to achieve optimal contrast.
To confirm that similar amounts of KDR were compared in the assay, the blots were stripped by incubating for 30 min at 37° C. in TBST with its pH adjusted to 2.4 with HCl, blocked for 1 h at room temp with 5% Blotto-TBS with 0.1% Tween 20 (Blotto-TBST), and reprobed with an anti-Flk-1 polyclonal antibody (Cat No. sc-315 from Santa Cruz Biotech), 1:200 in 5% Blotto-TBST with 1% normal goat serum (Life Tech Cat No. 16210064) for 2 h at room temp. The unbound antibody was removed by washing the blots four times with D-PBST, 5 min per wash. Subsequently, the blots were probed with an HRP-conjugated donkey anti-rabbit secondary antibody (Amersham Biosciences Cat No. NA934) diluted 1:10,000 in 5% Blotto-TBST for 1 h at room temperature, and washed four times with D-PBST. Finally, the blots were incubated with 2 mL of chemiluminescent substrate and exposed to X-ray film as described above.
Immunoblots of KDR immunoprecipitates prepared from HUVECs with and without prior VEGF stimulation, shown in
It is reasonable to conclude that the phosphorylated KDR detected was formed from pre-existing KDR through autophosphorylation of KDR dimers resulting from VEGF binding, as five minutes is not enough time to synthesize and process a large glycosylated cell-surface receptor such as KDR.
The ability of the assay to detect agents capable of blocking the VEGF activation of KDR was assessed by adding a series of compounds to HUVECs in combination with VEGF and measuring KDR phosphorylation with the immunoblot assay described above. As negative and positive controls, immunoprecipitates from unstimulated HUVECs and from HUVECs stimulated with VEGF in the absence of any test compounds were also tested in every assay. When a neutralizing anti-KDR antibody (Cat No. AF-357 from R&D Systems) was combined with the VEGF, the extent of KDR phosphorylation was greatly reduced (
To assess the potency of a KDR-binding peptide (P10-D) identified by phage display, the experiment was repeated with P10-D in the presence of VEGF. P10-D was able to largely inhibit the VEGF-induced phosphorylation of KDR. Re-probing the blot for total KDR showed that there is even more total KDR in the VEGF+P10-D-treated cells (+V+P10-D) than in the VEGF only-treated cells (+V) (
Using the methods of this Example, the following peptides demonstrated at least a 50% inhibition of VEGF-induced KDR phosphorylation at 10 μM:
P2-D, P3-D, P6-D, P7-E, P8-D, P9-D, P10-D, P11-D
P2 and P6 were the most potent compounds in the assay, producing at least a 50% inhibition of VEGF-induced KDR phosphorylation at 1 μM.
The following peptides were tested in the assay and did not produce significant inhibition of KDR activation at 10 μM:
P5-E, P14-D, P15-D, P16-D, P17-D, P18-E, P19-E, P20-E, P21-E, P23-D
In addition, tetrameric complexes of biotinylated derivatives P6-XB or P12-XB (prepared as described above and discussed in Example 6, infra) produced at least a 50% inhibition of VEGF-induced KDR phosphorylation at 10 nM.
In this Example, the ability of Tc-labeled P12-C to bind KDR was assessed using KDR-transfected 293H cells. The results show that Tc-labeled P12-C bound significantly better to KDR transfected 293H cells than to mock transfected 293H cells, and binding increased with concentration of the Tc-labeled polypeptide in a linear manner.
1. Preparation of Peptidic Chelate (P12-C) for Binding to Tc by SPPS
To a 250 mL of SPPS reaction vessel was added 6.64 mmol of H-Gly-2-Cl-trityl resin (0.84 mmol/g, Novabiochem). It was swelled in 80 mL of DMF for 1 h. For each coupling cycle, 26.6 mmol of DIEA, 26.6 mmol of a Fmoc-amino acid in DMF (EM Science), 26.6 mmol of HOBT (Novabiochem) in DMF, and 26.6 mmol of DIC were added to the resin. The total volume of DMF was 80 mL. The reaction mixture was shaken for 4 h. The resin then was filtered and washed with DMF (3×80 mL). A solution of 20% piperidine in DMF (80 mL) was added to the resin and it was shaken for 10 min. The resin was filtered and this piperidine treatment was repeated. The resin finally was washed with DMF (3×80 mL) and ready for the next coupling cycle. At the last coupling cycle, N,N-dimethyl glycine (Aldrich) was coupled using HATU/DIEA activation. Thus, to a suspension of N,N-dimethylglycine (26.6 mmol) in DMF was added a solution of 26.6 mmol of HATU (Perseptive Biosystems) in DMF and 53.1 mmol of DIEA. The clear solution was added to the resin and shaken for 16 h. Following the synthesis, the resin was filtered and washed with DMF (3×80 mL), CH2Cl2 (3×80 ml) and dried. The resin was mixed with 80 mL of AcOH/CF3CH2OH/DCM (1/1/8, v/v/v) and shaken for 45 min. The resin was filtered and the filtrate was evaporated to a paste. Purification of the crude material by silica gel chromatography using 25% MeOH/DCM afforded 2.0 g of the final product.
2. Coupling of the Peptidic Chelate (P12-C) to the Peptide (Fragment Coupling)
To a mixture of purified Me2N-Gly-Cys-(Trt)-Ser(tBu)Gly-OH— and hydroxybenzotriazole (0.0055 mmol) in DMF (0.25 mL), diisopropylcarbodiimide (0.0055 mmol) was added and the mixture was stirred at RT for 6 h. The peptide (0.005 mmol) in DMF (0.25 mL) was then added to the reaction mixture, and stirring was continued for an additional 6 h. DMF was removed under vacuum and the residue was treated with Reagent B and stirred for 3 h. TFA was removed under reduced pressure and the residue was purified by preparative HPLC using acetonitrile-water containing 0.1% TFA. Fractions containing the pure product were collected and freeze-dried to yield the peptide. The peptide was characterized by ES-MS and the purity was determined by reverse phase-HPLC (acetonitrile-water/0.1% TFA) gradient.
3. Synthesis of 99mTc-Labeled Peptide
A stannous gluconate solution was prepared by adding 2 mL of a 20 μg/mL SnCl22H2O solution in nitrogen-purged 1N HCl to 1.0 mL of nitrogen-purged water containing 13 mg of sodium glucoheptonate. To a 4 mL autosampler vial was added 20-40 μL (20-40 μg) of P12-C ligand dissolved in 50/50 ethanol/H2O, 6-12 mCi of 99mTcO4− in saline and 100 μL of stannous glucoheptonate solution. The mixture was heated at 100° C. for 22 min. The resulting radiochemical purity (RCP) was 10-47% when analyzed using a Vydac C18 Peptide and Protein column that was eluted at a flow rate of 1 mL/min with 66% H2O (0.1% TFA)/34% ACN(0.085% TFA). The reaction mixture was purified by HPLC on a Vydac C18 column (4.6 mm×250 mm) at a flow rate of 1 mL/min, using 0.1% TFA in water as aqueous phase and 0.085% TFA in acetonitrile as the organic phase. The following gradient was used; 29.5% org. for 35 min., ramp to 85% org. over 5 min, hold for 10 min. The fraction containing 99mTc-P12-C (which no longer contained the ACM protecting group) was collected into 500 μL of a stabilizing buffer containing 5 mg/mL ascorbic acid and 16 mg/mL hydroxypropyl-γ-cyclodextrin in 50 mM phosphate buffer. The mixture was concentrated using a centrifugal evaporation apparatus to remove acetonitrile, and 200 μL of 0.1% HSA in 50 mM pH 5 citrate buffer was added. The resulting product had an RCP of 100%. Prior to injection into animals, the compound was diluted to the desired radioconcentration with normal saline.
4. Transfection of 293H Cells
293H cells were transfected using the protocol described in avidin HRP example. Transfection was done in black/clear 96-well plates (Becton Dickinson, cat. # 354640). The cells in one half of the plates (48 wells) were mock-transfected (with no DNA) and the cells in the other half of the plates were transfected with KDR cDNA. The cells were 80-90% confluent at the time of transfection and completely confluent the next day, at the time of the assay; otherwise the assay was aborted.
5. Preparation of Opti-MEMI Media with 0.1% HSA
Opti-MEMI was obtained from Invitrogen (cat. # 11058-021) and human serum albumin (HSA) was obtained from Sigma (cat. # A-3782). To prepare opti-MEMI media with 0.1% HSA, 0.1% w/v HSA was added to opti-MEMI, stirred at room temperature for 20 minutes, and then filter sterilized using a 0.2 μM filter.
6. Preparation of 99mTc-Labeled Peptide Dilutions for the Assay
Stock solution of 99mTc-labeled P12-C (117 μCi/mL) was diluted 1:100, 1:50, 1:25 and 1:10 in opti-MEMI with 0.1% HSA to provide solutions with final concentration of 1.17, 2.34, 4.68 and 11.7 μCi/mL of Tc-labeled P12-C.
7. Assay to Detect the Binding of 99mTc-Labeled Peptide
Cells were used 24 h after transfection, and to prepare the cells for the assay, they were washed 1× with 100 μL of room temperature opti-MEMI with 0.1% HSA. After washing, the opti-MEMI with 0.1% HSA was removed from the plate and replaced with 70 μL of 1.17, 2.34, 4.68 and 11.7 μCi/mL of 99mTc-labeled P12-C (prepared as above). Each dilution was added to three separate wells of mock and KDR transfected cells. After incubating at room temperature for 1 h, the plates were transferred to 4° C. for 15 minutes and washed 5 times with 100 μL of cold binding buffer (opti-MEMI with 0.1% HSA), gently blotted dry and checked under a microscope for cell loss. A 100 μL aliquot of solubilizing solution (2% Triton X-100, 10% Glycerol, 0.1% BSA) was added to each well and the plates were incubated at 37° C. for 10 minutes. The solubilizing solution in each well was mixed by pipeting up and down, and the resulting solutions were transferred to 1.2 mL tubes. Each well was washed once with 100 μL of solubilizing solution, and the washes were added to the corresponding 1.2 mL tube. Each 1.2 mL tube was then transferred to a 15.7 mm×100 cm tube to be counted in an LKB Gamma Counter (99mTc-window for 20 sec).
8. Binding of 99mTc-Labeled Peptide to KDR Transfected Cells
The ability of 99mTc-labeled P12-C to bind specifically to KDR was demonstrated using transiently transfected 293H cells. As shown in
To determine the binding of peptides identified by phage display to KDR expressed in transiently-transfected 293H cells, a novel assay that measures the binding of biotinylated peptides complexed with neutravidin HRP to KDR on the surface of the transfected cells was developed. This assay was used to screen the biotinylated peptides described above. Neutravidin HRP was used instead of streptavidin or avidin because it has lower non-specific binding to molecules other than biotin, due to the absence of lectin binding carbohydrate moieties and also due to the absence of the cell adhesion receptor-binding RYD domain in neutravidin.
In the experiments described herein, tetrameric complexes of KDR-binding peptides P6-XB, P5-XB, P12-XB, and P13-XB and a control peptide, P1-XB, were prepared and tested for their ability to bind 293H cells that were transiently-transfected with KDR. All four tetrameric complexes of KDR-binding peptides bound to the KDR-expressing cells; however, P13-XB exhibited the best KD (1.81 nM). The tetrameric complexes of KDR-binding peptides P6-XB and P5-XB exhibited improved binding versus their monomer cogeners. Moreover, inclusion of a spacer (between the KDR-binding peptide and the biotin) in these constructs was shown to improve binding in Experiment B.
Experiment C demonstrates the use of this assay to assess the effect of serum on binding of peptides of the invention to KDR and VEGF/KDR complex. The binding of P5-XB, P6-XB and P13-XB was not significantly affected by the presence of serum, while the binding of P12-XB was reduced more than 50% in the presence of serum.
Experiment D demonstrates that this assay is useful in evaluating distinct combinations of KDR and VEGF/KDR complex-binding polypeptides for use in multimeric targeting constructs which contain more than one KDR and VEGF/KDR complex-binding polypeptide. Moreover, Experiments D and E establish that heteromeric constructs, which have two or more KDR-binding peptides that bind to different binding sites, exhibited superior binding to “homotetrameric” constructs of the targeting peptides alone.
a. Preparation of m-RNA and 5′ RACE Ready cDNA Library
HUVEC cells were grown to almost 80% confluence in 175 cm2 tissue culture flasks (Becton Dickinson, Biocoat, cat # 6478), and then 10 ng/mL of bFGF (Oncogene, cat # PF003) was added for 24 h to induce expression of KDR. mRNA was isolated using the micro-fast track 2.0 kit from Invitrogen (cat. # K1520-02). 12 μg of mRNA (measured by absorbance at 260 nM) was obtained from two flasks (about 30 million cells) following the kit instructions. Reverse transcription to generate cDNA was performed with 2 μg of mRNA, oligo dT primer (5′-(T)25GC-3′) and/or smart II oligo (5′AAGCAGTGGTAACAACGCAGAGTA CGCGGG-3′) using Moloney Murine Leukemia Virus (MMLV) reverse transcriptase. The reaction was performed in a total volume of 20 μL and the reaction mix contained 2 μL of RNA, 1 μL smart II oligo, 1 μL of oligo dT primer, 4 μL of 5× first-strand buffer (250 mM Tris HCl pH 8.3, 375 mM KCl, 30 mM MgCl2) 1 μL DTT (20 mM, also supplied with reverse transcriptase), 1 μL dNTP mix (10 mM each of dATP, dCTP, dGTP, and dTTP in ddH2O, Stratagene, cat. # 200415), 9 μL ddH2O and 1 μL MMLV reverse transcriptase (Clonetech, cat #8460-1). The reverse transcription reaction was performed for 90 minutes at 42° C., and the reaction was stopped by adding 250 μL of tricine-EDTA buffer (10 mM tricine, 1.0 mM EDTA). The reverse transcription product, a 5′ RACE ready cDNA library, can be stored for 3 months at −20° C. All water used for DNA and RNA applications was DNAse and RNAse free from USB (cat. # 70783).
b. Cloning of s-KDR into TOPOII Vector
To clone s-KDR, a 5′ oligo (G ATG GAG AGC AAG GTG CTG CTG G) and a 3′ oligo (C CAA GTT CGT CTT TTC CTG GGC A) were used. These were designed to amplify the complete extracellular domain of KDR (˜2.2 kbps) from the 5′ RACE ready cDNA library (prepared above) using polymerase chain reaction (PCR) with pfu polymerase (Stratagene, cat. # 600135). The PCR reaction was done in total volume of 50 μL and the reaction mix contained 2 μL 5′ RACE ready cDNA library, 1 μL 5′ oligo (10 μM), 1 μL 3′ oligo (10 μM), 5 μL 10×PCR buffer [PCR buffer (200 mM Tris-HCl pH 8.8, 20 mM MgSO4, 100 mM KCl, 100 mM (NH4)2SO4) supplied with pfu enzyme plus 1% DMSO and 8% glycerol], 1 μL dNTP mix (10 mM) and 40 μL ddH2O. The PCR reaction was performed by using a program set for 40 cycles of 1 minute at 94° C., 1 minute at 68° C. and 4 minutes at 72° C. The PCR product was purified by extraction with 1 volume of phenol, followed by extraction with 1 volume of chloroform, and precipitated using 3 volume of ethanol and 1/10 volume of 3M sodium acetate. The PCR product was resuspended in 17 μL of ddH2O, the 2 μL of 10×Taq polymerase buffer (100 mM Tris-HCl pH 8.8, 500 mM KCl, 15 mM MgCl2, 0.0% gelatin) and 1 μL of Taq polymerase (Stratagene, cat. # 600131) was added to generate an A overhang to each end of the product. After incubating for 1 hour at 72° C., the modified product was cloned directly into a TOPOII vector from invitrogen (cat. # K4600-01) following the manufacturer's protocol to give TOPO-sKDR. The TOPO vector allows easy cloning of PCR products because of the A-overhang in Taq (PCR enzyme)-treated PCR products.
c. Cloning the Transmembrane and Cytoplasmic Domains of KDR into TOPO II Vector
To clone the transmembrane and cytoplasmic domains of KDR, a 5′ oligo (TCC CCC GGG ATC ATT ATT CTA GTA GGC ACG GCG GTG) and a 3′ oligo (C AGG AGG AGA GCT CAG TGT GGT C) were used. These were designed to amplify the complete transmembrane and cytoplasmic domains of KDR (˜1.8 kbps) from the 5′ RACE ready cDNA library (described above) using polymerase chain reaction (PCR) with pfu polymerase. PCR reaction conditions and the program were exactly the same as described above for s-KDR. Just as with the s-KDR sequence, the PCR product was purified using phenol chloroform extraction, treated with Taq polymerase and cloned into TOPOII vector from invitrogen to give TOPO-CYTO.
d. Cloning of Full-Length KDR into pcDNA6 Vector
To create the full-length receptor, the extra-cellular domain and the cytoplasmic domain (with trans-membrane domain) were amplified by PCR separately from TOPO-sKDR and TOPO-CYTO respectively and ligated later to create the full-length receptor. An oligo with a Not1 site at the 5′ end of the extracellular domain (A TAA GAA TGC GGC CGC AGG ATG GAG AGC AAG GTG CTG CTG G) and an oligo complimentary to the 3′ end of the extracellular domain (TTC CAA GTT CGT CTT TTC CTG GGC ACC) were used to amplify by PCR the extracellular domain from TOPO-sKDR. Similarly, the 5′ oligo (ATC ATT ATT CTA GTA GGC ACG GCG GTG) and the 3′ oligo, with a Not1 site (A TAA GAA TGC GGC CGC AAC AGG AGG AGA GCT CAG TGT GGT C), were used to amplify by PCR the cytoplasmic domain of KDR (with transmembrane domain) from TOPO-CYTO. Both PCR products were digested with Not1 and ligated together to create the full-length receptor. The cDNA encoding the full-length receptor was purified on an agarose gel and ligated into the Not1 site of the pcDNA6/V5-HisC vector. Purification of DNA and ligation was done as described earlier for psKDR. The ligation reaction was used to transform a culture of DH5α bacteria, and a number of individual clones were analyzed for the presence and orientation of insert by restriction analysis of purified plasmid from each clone with EcoRI enzyme.
e. Cell Culture
293H cells were obtained from Invitrogen (cat. # 11631) and grown as monolayer cultures in their recommended media plus 1 mL/L pen/strep (Invitrogen, cat. # 15140-148). All of the cells were grown in presence of antibiotic for everyday culture, but were split into antibiotic free media for 16-20 hours prior to transfection.
f. Preparation of DNA for Transfection
E. coli. bacteria DH5α containing pf-KDR was streaked onto LB with 50 μg/mL ampicillin (LB agar from US biologicals, cat. # 75851 and ampicillin from Sigma, cat. #A2804) plates from a glycerol stock, and plates were left in a 37° C. incubator to grow overnight. The next morning, a single colony was picked from the plate and grown in 3 mL of LB/ampicillin media (LB from US biologicals, cat. # US75852) at 37° C. After 8 hours, 100 μL of bacterial culture from the 3 mL tube was transferred to 250 mL of LB/ampicillin media for overnight incubation at 37° C. Bacteria were grown up with circular agitation in a 500 mL bottle (Beckman, cat. # 355605) at 220 rpm in a Lab-Line incubator shaker. The next day, the bacterial culture was processed using maxi-prep kit (QIAGEN, cat. # 12163). Generally, about 1 mg of plasmid DNA (as quantitated by absorbance at 260 nm) was obtained from 250 mL of bacterial culture.
g. Transfection of 293H Cells in 96 Well Plate
Transfection was done as recommended in the lipofectamine 2000 protocol (Invitrogen, cat# 11668-019) using a poly-D-lysine-coated 96 well plate. 320 ng of KDR DNA (pc-DNA6-fKDR)/per well in 0.1 mL was used for 96 well plate transfections. Transfection was done in serum-containing media, the transfection reagent mix was removed from cells after 6-8 hours and replaced with regular serum-containing medium. Transfection was done in black/clear 96-well plates (Becton Dickinson, cat. # 354640). The cell in one half of the plate (48 wells) were mock-transfected (with no DNA), and the cells in the other half of the plate were transfected with KDR cDNA. The cells were 80-90% confluent at the time of transfection and completely confluent next day, at the time of the assay, otherwise the assay was aborted.
h. Preparation of M199 Media
M199 media was prepared as described above.
i. Preparation of SoftLink Soft Release Avidin-Sepharose
SoftLink soft release avidin-sepharose was prepared by centrifuging the sepharose obtained from Promega (cat. # V2011) at 12,000 rpm for 2 minutes, washing twice with ice cold water (centrifuging in-between the washes) and resuspending the pellet in ice cold water to make a 50% slurry in ddH2O. A fresh 50% slurry of avidin-sepharose was prepared for each experiment.
j. Preparation of Peptide/Neutravidin HRP Solution
Biotinylated peptides P6-XB, P5-XB, P12-XB, P13-XB and the biotinylated control peptide, P1-XB, (prepared as described above) were used to prepare 250 μM stock solutions in 50% DMSO and a 33 μM stock solution of Neutravidin HRP was prepared by dissolving 2 mg of Neutravidin HRP (Pierce, cat. # 31001) in 1 mL of ddH2O. Peptide stock solutions were stored at −20° C., whereas the Neutravidin HRP stock solution was stored at −80° C. The structures of the biotinylated peptides are shown in Table 1a. To prepare peptide/neutravidin HRP complexes, 10 μL of 250 μM biotinylated peptide stock solution and 10 μL of 33 μM Neutravidin HRP were added to 1 ml of M199 medium. This mixture was incubated on a rotator at 4° C. for 60 minutes, followed by addition of 50 μL of soft release avidin-sepharose (50% slurry in ddH2O) to remove excess peptides and another incubation for 30 minutes on a rotator at 4° C. Finally, the soft release avidin-sepharose was pelleted by centrifuging at 12,000 rpm for 5 minutes at room temperature, and the resulting supernatant was used for the assays. Fresh peptide/neutravidin HRP complexes were prepared for each experiment.
k. Preparation of Peptide/Neutravidin HRP Dilutions for the Assay
For saturation binding experiments, 120 μL, 60 μL, 20 μL, 10 μL, 8 μL, 6 μL, 4 μL and 1 μL of peptide/neutravidin HRP complex were added to 1.2 ml aliquots of M199 medium to create dilutions with final concentrations of 33.33 nM, 16.65 nM, 5.55 nM, 2.78 nM, 1.67 nM, 1.11 nM and 0.28 nM complex, respectively.
l. Preparation of Blocking Solution for Transfected 293H Cells
Blocking solution was prepared by adding 20 mL of M199 medium to 10 mg of lyophilized unlabeled neutravidin (Pierce, cat. # 31000). Fresh blocking solution was used for each experiment.
m. Assay to Detect the Binding of Peptide/Neutravidin HRP
After transfection (24 h), each well of the 293H cells was washed 1× with 100 μL of M199 medium and incubated with 80 μL of blocking solution at 37° C. After one hour, cells were washed 2× with 100 μL of M199 media and incubated with 70 μL of peptide/neutravidin HRP dilutions of P1-XB, P6-XB, P5-XB, P12-XB and P13-XB for two and half hours at room temperature. Each dilution was added to three separate wells of mock as well as KDR-transfected 293H cells (two plates were used for each saturation binding experiment). After incubation at room temperature, plates were transferred to 4° C. for another half-hour incubation. Subsequently, cells were washed five times with ice-cold M199 media and 1× with ice-cold PBS (in that order). After the final wash, 100 μL of ice cold TMB solution (KPL, cat. # 50-76-00) was added to each well, and each plate was incubated for 30 minutes at 37° C. in an air incubator. Finally, the HRP enzyme reaction was stopped by adding 50 μL of 1N phosphoric acid to each well, and binding was quantitated by measuring absorbance at 450 nm using a microplate reader (BioRad Model 3550).
n. Binding of Peptide/Neutravidin HRP to KDR-Transfected Cells
In this assay, complexes of P6-XB, P5-XB, P12-XB, P13-XB peptides, and the control peptide, P1-XB, with neutravidin HRP were prepared as described above and tested for their ability to bind 293H cells that were transiently-transfected with KDR. During the peptide/neutravidin complex preparation, a 7.5 fold excess of biotinylated peptides over neutravidin HRP was used to ensure that all four biotin binding sites on neutravidin were occupied. After complex formation, the excess of free biotinylated peptides was removed using soft release avidin-sepharose to avoid any competition between free biotinylated peptides and neutravidin HRP-complexed biotinylated peptides.
The experiment was performed at several different concentrations of peptide/neutravidin HRP, from 0.28 nM to 33.33 nM, to generate saturation binding curves for P5-XB and P6-XB (
Experiment B was designed to look at the effect of a spacer (X) between the KDR-binding sequence (P6 and P5) and biotin. In this experiment, biotinylated P6 and P5 (with and without spacer X, prepared as set forth above) were tested, and P1 (with and without spacer, prepared as set forth above) was used as a negative control.
This experiment was performed as set forth in Experiment A described above, except that it was only done at single concentration of 2.78 nM. It is evident from the results, shown in
Experiment C examined the serum effect on the binding of P6-XB, P5-XB, P12-XB, and P13-XB. In this experiment, biotinylated peptide/avidin HRP complexes of P6-XB, P5-XB, P12-XB, and P13-XB were tested in M199 media (as described above in Experiment A) with and without 40% rat serum. This experiment was performed as described for Experiment A, except that it was only done at single concentration of 6.66 nM for P6-XB and P5-XB, 3.33 nM for P12-XB and 2.22 nM for P13XB.
The results, shown in
Experiment D was designed to evaluate the binding of tetrameric complexes of KDR and VEGF/KDR complex-binding polypeptides P6-XB and P5-XB, particularly where the constructs included at least two KDR-binding polypeptides. The KDR-binding peptides and control binding peptide (P1-XB) were prepared as described above. This experiment was performed using the protocol set forth for Experiment A, except the procedures set forth below were unique to this experiment.
a. Preparation of Peptide/Neutravidin HRP Solutions
250 μM stock solutions of biotinylated peptides P1-X-B, P6-XB , and P5-XB were prepared in 50% DMSO and a 33 μM stock solution of Neutravidin HRP was prepared by dissolving 2 mg of Neutravidin HRP (Pierce, cat. # 31001) in 1 mL of ddH2O. Peptide stock solutions were stored at −20° C., whereas the Neutravidin HRP stock solution was stored at −80° C. To prepare peptide/neutravidin HRP complexes, a total 5.36 μL of 250 μM biotinylated peptide stock solution (or a mixture of peptide solutions, to give peptide molecules four times the number of avidin HRP molecules) and 10 μL of 33 μM Neutravidin HRP were added to 1 mL of M199 medium. This mixture was incubated on a rotator at 4° C. for 60 minutes, followed by addition of 50 μL of soft release avidin-sepharose (50% slurry in ddH20) to remove excess peptides and another incubation for 30 minutes on a rotator at 4° C. Finally, the soft release avidin-sepharose was pelleted by centrifuging at 12,000 rpm for 5 minutes at room temperature, and the resulting supernatant was used for the assays. Fresh peptide/neutravidin HRP complexes were prepared for each experiment.
b. Assay to Detect the Binding of Peptide/Neutravidin HRP
The procedure described above was used to detect binding of the peptide/neutravidin HRP. The results of this experiment establish that P6-XB and P5-XB bind to KDR in multimeric fashion, and cooperate with each other for binding to KDR in 293H transfected cells.
P1-XB is a biotinylated derivative of P1, a control peptide that does not bind to KDR. As expected, a tetrameric complex of P1-XB with avidin-HRP did not show enhanced binding to KDR-transfected cells. As shown in
A mixture of 25% P1-XB with 75% P5-XB did not bind significantly over background to KDR-transfected cells, indicating that multivalent binding is critical for the P5-XB/avidn-HRP complex to remain bound to KDR throughout the assay. This phenomenon also held true for P6-XB, where substituting 50% of the peptide with P1-XB in the tetrameric complex abolished almost all binding to KDR on the transfected cells.
A peptide mixture composed of 50% P1-XB with 25% P6-XB and 25% P5-XB bound quite well to KDR-transfected cells relative to mock-transfected cells, indicating that there is a great advantage to targeting two binding sites on the. same target molecule. Furthermore, it was noted that tetrameric complexes containing different ratios of P6-XB and P5-XB (3:1, 2:2, and 1:3) all bound much better to KDR-transfected cells than pure tetramers of either peptide, in agreement with the idea that targeting two distinct sites on a single target molecule is superior to multimeric binding to a single site. This may be because multimeric binding to a single target requires that the multimeric binding entity span two or more separate target molecules which are close enough together for it to bind them simultaneously, whereas a multimeric binder which can bind two or more distinct sites on a single target molecule does not depend on finding another target molecule within its reach to achieve multimeric binding. The ratios of specific binding of heterotetramer, heterotrimer and heterodimer to monomer were calculated by dividing the specific binding (obtained by subtracting the binding to mock transfected cells from KDR transfected cells) of tetramer, trimer and dimer with that of monomer. Monomer, which was used to calculate the ratios, for each set of heteromers is recorded at the end of each heteromer listing in the table and given the ratio of 1.
The enhanced binding ratios of the homodimers range from about 1-4 fold as seen in Table 2, whereas the binding of the heterodimers ranges from 2-110 fold, demonstrating the synergistic effect on binding strength of complementary sequences (Table 3).
Experiment E was designed to confirm that P6-XB and P5-XB bind to distinct binding sites on KDR. If the peptides bind to the same site on KDR, they would likely compete with each other for binding to KDR, whereas if the peptides bind to different sites, there should be no competition between the peptides for binding to KDR. This experiment was performed using a single concentration of P5-XB/avidin HRP (3.33 nM) solution in each well and adding a varying concentration (0-2.5 μM) of P1-XB, P5-XB and P6-XB, none of which were complexed with avidin.
It is evident from the results, shown in
To obtain a higher affinity peptide binder to the KDR receptor, two linear peptides (P9, P10) were linked together to form a heterodimer. As determined by VEGF competition assays, these two peptides bind different sites on KDR. It is possible, therefore, that both peptides in the heterodimer could bind a single protein molecule at the same time and as result, bind with a higher overall affinity for the receptor. Two forms of the heterodimer were synthesized in an effort to determine the optimal orientation for this bidentate binding event. The peptides were either linked together in a tail-to-tail orientation via their C-terminal lysine residues or in a head-to-head orientation via their N-terminal amino groups.
The peptides were synthesized using standard Fmoc solid-phase peptide synthesis protocols. To add spacing between the two peptides in the dimer, each individual peptide monomer was modified at either the C-terminal lysine (to make the tail-to-tail dimer) or N-terminal amino (to make the head-to-head dimer) with a monodispersed PEG-based amino acid linker (Fmoc-NH-PEG4-CO2H). After deprotection of the Fmoc group of each PEG linker, the P9 peptide was labeled with levulinic acid (CH3(C═O)(CH2)2CO2H) and the P10 peptide was labeled with Boc-amino-oxyacetic acid. After deprotection, cleavage and purification, the two peptides were ligated together in a 1:1 ratio in denaturing buffer (8M Urea, 0.1M sodium acetate, pH 4.6) to form an oxime linkage (—CH═N—O—) between the two different peptides. Using the two different sets of monomers, the tail-to-tail and head-to-head heterodimers were formed in solution and purified to homogeneity by standard reverse phase protocols. A more detailed description of this linkage chemistry is found in K. Rose, et al. JACS, 1999, 121: 7034-7038, which is hereby incorporated by reference in its entirety.
1. Assay for Binding Affinity of Heterodimeric Constructs
To assay for improved binding affinity relative to either monomeric peptide, each heterodimer was assayed for binding using a surface plasmon resonance instrument (Biacore 3000). Soluble KDR receptor was cross-linked to the dextran surface of a CM5 sensor chip by the standard amine coupling procedure. A 0.5 mg/mL solution was diluted 1:40 with 50 mM acetate, pH 6.0 to immobilize a total RL of 12721. Experiments were performed in PBST buffer (5.5 mM phosphate, pH 7.65, 0.15M NaCl, 0.1% Tween-20 (v/v)). Peptide solutions quantified by extinction coefficient were diluted to produce 1000, 500, 250, 125, 62.5 and 31.3 nM solutions. For association, peptides were injected at 20 μL/min for 2 minutes using the kinject program. Following a 3 minute dissociation period, any remaining peptide was stripped from the KDR surface with a quickinject of 50 mM NaOH, 1M NaCl for 15 s at 75 μL/min. Monomeric P9 and P10 were run as standards. Sensorgrams were analyzed by global analysis using BIAevaluation software 3.1.
The peptide dimers investigated in this study by BIAcore analysis bind KDR with significantly higher affinity than either of the constituent monomers. By design, the interaction of a dimeric peptide with KDR is expected to proceed through two kinetic steps. With more detailed analysis it may be possible to accurately dissect the individual rate constants for these steps. However, an apparent KD was calculated for the dimer interaction using the rate describing the initial encounter (ka,1) and the predominant off-rate (kd,2). From this analysis, the apparent KD of the head-to-head dimer was 2.2 nM and that of the tail-to-tail dimer was 11 nM (Table 4). These estimates represent an increase in affinity over the individual monomers of greater than 60-fold for the comparison of the P9 to T-T dimer KD (732 nM /11.1 nM) and greater than 560-fold for the P10 to H-H dimer KD (1260 nM/2.24 nM).
The following methods were used for the preparation of individual peptides and dimeric peptide constructs described in Examples (8-12).
1. Automated Peptide Synthesis
Peptide synthesis was carried out on an ABI-433A Synthesizer (Applied Biosystems Inc., Foster City, Calif.) on a 0.25 mmol scale using the FastMoc protocol. In each cycle of this protocol preactivation was accomplished by dissolution of 1.0 mmol of the requisite dry Nα-Fmoc side-chain protected amino acid in a cartridge with a solution of 0.9 mmol of HBTU, 2 mmol of DIEA, and 0.9 mmol of HOBt in a DMF-NMP mixture. The peptides were assembled on NovaSyn TGR (Rink amide) resin (substitution level 0.2 mmol/g). Coupling was conducted for 21 min. Fmoc deprotection was carried out with 20% piperidine in NMP. At the end of the last cycle, the N-terminal Fmoc group was removed and the fully protected resin-bound peptide was acetylated using acetic anhydride/DIEA/HOBt/NMP.
2. Cleavage Side-Chain Deprotection and Isolation of Crude Peptides
Cleavage of the peptides from the resin and side-chain deprotection was accomplished using Reagent B for 4.5 h at ambient temperature. The cleavage solutions were collected and the resins were washed with an additional aliquot of Reagant B. The combined solutions were concentrated to dryness. Diethyl ether was added to the residue with swirling or stirring to precipitate the peptides. The liquid phase was decanted, and solid was collected. This procedure was repeated 2-3 times to remove impurities and residual cleavage cocktail components.
3. Cyclization of Di-Cysteine Peptides
The crude ether-precipitated linear di-cysteine containing peptides were cyclized by dissolution in water, mixtures of aqueous acetonitrile (0.1% TFA), aqueous DMSO or 100% DMSO and adjusting the pH of the solution to 7.5-8.5 by addition of aqueous ammonia, aqueous ammonium carbonate, aqueous ammonium bicarbonate solution, aqueous N-methylglucamine (meglumine) solution or DIEA. The mixture was stirred in air for 16-48 h, acidified to pH 2 with aqueous trifluoroacetic acid and then purified by preparative reverse phase HPLC employing a gradient of acetonitrile into water. Fractions containing the desired material were pooled and the purified peptides were isolated by lyophilization.
4. Preparation of Peptides Containing Linkers
In a typical experiment, 400 mg of the resin-bound peptide bearing an ivDde-protected lysine) was treated with 10% hydrazine in DMF (2×20 mL). The resin was washed with DMF (2×20 mL) and DCM (1×20 mL). The resin was resuspended in DMF (10 mL) and treated with Fmoc-8-amino-3,6-dioxaoctanoic acid (0.4 mmol), HOBt (0.4 mmol), DIC (0.4 mmol) and DIEA (0.8 mmol) with mixing for 4 h. After the reaction, the resin was washed with DMF (2×10 mL) and with DCM (1×10 mL). The resin was then treated with 20% piperidine in DMF (2×15 mL) for 10 min each time. The resin was washed and the coupling with Fmoc-8-amino-3,6-dioxaoctanoic acid and the Fmoc protecting group removal were repeated once more.
The resulting resin-bound peptide with a free amino group was washed and dried and then treated with Reagent B (20 mL) for 4 h. The mixture was filtered and the filtrate concentrated to dryness. The residue was stirred with ether to produce a solid, which was washed with ether and dried. The solid was dissolved in anhydrous DMSO and the pH adjusted to 7.5 with DIEA. The mixture was stirred for 16 h to effect the disulfide cyclization and the reaction was monitored by analytical HPLC. After completion of the cyclization, the reaction mixture was diluted with 25% acetonitrile in water and applied directly to a reverse phase C-18 column. Purification was effected using a gradient of acetonitrile into water (both containing 0.1% TFA). Fractions were analyzed by HPLC, and those containing the pure product were combined and lyophilized to provide the required peptide.
5. Preparation of Biotinylated Peptides Containing Linkers
In a typical experiment, 400 mg of the resin-bound peptide bearing an ivDde-protected lysine, was treated with 10% hydrazine in DMF (2×20 mL). The resin was washed with DMF (2×20 mL) and DCM (1×20 mL). The resin was resuspended in DMF (10 mL) and treated with Fmoc-8-amino-3,6-dioxaoctanoic acid (0.4 mmol), HOBt (0.4 mmol), DIC (0.4 mmol) and DIEA (0.8 mmol) with mixing for 4 h. After the reaction, the resin was washed with DMF (2×10 mL) and with DCM (1×10 mL). The resin was then treated with 20% piperidine in DMF (2×15 mL) for 10 min each time. The resin was washed and the coupling with Fmoc-8-amino-3,6-dioxaoctanoic acid and removal of the Fmoc protecting group were repeated once more.
The resulting resin-bound peptide with a free amino group was treated with a solution of Biotin-NHS ester (0.4 mmol, 5 equiv.) and DIEA (0.4 mmol, 5 equiv.) in DMF for 2 h. The resin was washed and dried as described previously and then treated with Reagent B (20 mL) for 4 h. The mixture was filtered and the filtrate concentrated to dryness. The residue was stirred with ether to produce a solid that was collected, washed with ether, and dried. The solid was dissolved in anhydrous DMSO and the pH adjusted to 7.5 with DIEA. The mixture was stirred for 4-6 h to effect the disulfide cyclization which was monitored by analytical HPLC. Upon completion of the cyclization, the reaction mixture was diluted with 25% acetonitrile in water and applied directly to a reverse phase C-18 column. Purification was effected using a gradient of acetonitrile into water (both containing 0.1% TFA). Fractions were analyzed by HPLC and those containing the pure product were collected and lyophilized to provide the required biotinylated peptide.
6. Preparation of DOTA-Conjugated Peptides for Labeling with Selected Gadolinium or Indium Isotopes
In a typical experiment, 400 mg of the resin-bound peptide bearing an Nε-ivDde-protected lysine moiety was treated with 10% hydrazine in DMF (2×20 mL). The resin was washed with DMF (2×20 mL) and DCM (1×20 mL). The resin was resuspended in DMF (10 mL) and treated with Fmoc-8-amino-3,6-dioxaoctanoic acid (0.4 mmol), HOBt (0.4 mmol), DIC (0.4 mmol), DIEA (0.8 mmol) with mixing for 4 h. After the reaction, the resin was washed with DMF (2×10 mL) and with DCM (1×10 mL). The resin was then treated with 20% piperidine in DMF (2×15 mL) for 10 min each time. The resin was washed and the coupling with Fmoc-8-amino-3,6-dioxaoctanoic acid and removal of the Fmoc protecting group were repeated once. The resulting resin-bound peptide with a free amino group was resuspended in DMF (10 mL) and treated with a solution of 1,4,7,10-tetraazacyclododecane-1,4,7,10-tetraacetic acid,-1,4,7-tris-t-butyl ester (DOTA-tris-t-butyl ester, 0.4 mmol, 5 equiv.), HOBt (0.4 mmol), DIC (0.4 mmol) and DIEA (0.8 mmol) in DMF (10 mL) with mixing for 4 h. Upon completion of the reaction, the resin was washed with DMF (2×10 mL) and with DCM (1×10 mL) and treated with Reagent B (20 mL) for 4 h. The mixture was filtered and the filtrate concentrated to dryness. The residue was stirred in ether to produce a solid that was collected, washed with ether, and dried. The solid was dissolved in anhydrous DMSO and the pH adjusted to 7.5 with DIEA. The mixture was stirred for 16 h to effect the disulfide cyclization, which was monitored by HPLC. Upon completion of the cyclization, the mixture was diluted with 25% acetonitrile in water and applied directly to a reverse phase C-18 HPLC column. Purification was effected using a gradient of acetonitrile into water (both containing 0.1% TFA). Fractions were analyzed by HPLC and those containing the pure product were combined and lyophilized to provide the required biotinylated peptide.
The following monomeric peptides of Table 5 were prepared by the above methods.
As used in Table 5 above and elsewhere herein, the designation “C*” refers to a cysteine residue that contributes to a disulfide bond. In general, the monomeric peptides described herein are prepared as cyclic disulfide peptides and then linked together to form dimers. Consequently, even if a cysteine residue lacks the “C*” designation, the presence of a disulfide bond to the nearest cysteine in the monomer can generally be assumed. The monomer components of the dimers will also generally contain such disulfide bonds, regardless of whether the cysteine residues contain the “C*” designation or not. However, one skilled in the art will appreciate that the dimers and other heteromultimers of the present invention could alternatively be prepared by performing the cyclization of di-cysteine peptides after the monomers are linked to form dimers, and the present invention is not intended to be limiting with respect to the presence or absence of such disulfide bonds.
The purified peptide monomers mentioned above in Example 8 were used in the preparation of various homodimeric and heterodimeric constructs.
1. Preparation of Homodimer-Containing Constructs
To prepare homodimeric compounds, half of the peptide needed to prepare the dimer was dissolved in DMF and treated with 10 equivalents of glutaric acid bis-N-hydoxysuccinimidyl ester. The progress of the reaction was monitored by HPLC analysis and mass spectroscopy. At completion of the reaction, the volatiles were removed in vacuo and the residue was washed with ethyl acetate to remote the unreacted bis-NHS ester. The residue was dried, re-dissolved in anhydrous DMF and treated with another half portion of the peptide in the presence of 2 equivalents of DIEA. The reaction was allowed to proceed for 24 h. This mixture was applied directly to a YMC reverse phase HPLC column and purified by elution with a linear gradient of acetonitrile into water (both containing 0.1% TFA).
2. Preparation of Heterodimer-Containing Constructs
For the purpose of this discussion, “A” and “B” refer to the constructs of monomer peptides A and F already functionalized within the branching group B and a spacer C and E, as defined previously in this text. In the case of heterodimers, one of the monomers (“A”) was reacted with the bis-NHS ester of glutaric acid and after washing off the excess of bis-NHS ester (as described for the homodimeric compounds), the second monomer (“B”) was added in the presence of DIEA. After the reaction the mixture was purified by preparative HPLC. Typically, to a solution of glutaric acid bis N-hydoxysuccinimidyl ester (0.02 mmol, 10 eqivalents) in DMF (0.3 mL) was added a solution of peptide A and DIEA (2 equiv) in DMF (0.5 mL) and the mixture was stirred for 2 h. The progress of the reaction was monitored by HPLC analysis and mass spectroscopy. At completion of the reaction, the volatiles were removed in vacuo and the residue was washed with ethyl acetate (3×1.0 mL) to remove the unreacted bis-NHS ester. The residue was dried, re-dissolved in anhydrous DMF (0.5 mL) and treated with a solution of peptide “B” and DIEA (2 equiv) in DMF (0.5 mL) for 24 h. The mixture was diluted with water (1:1,v/v) and applied directly to a YMC C-18 reverse phase HPLC column and purified by elution with a linear gradient of acetonitrile into water (both containing 0.1% TFA). Fractions were analyzed by analytical HPLC and those containing the pure product were combined and lyophilized to obtain the required dimer. The following dimers were prepared by this method (structure, name, compound reference number):
Ac-AGPTWC*EDDWYYC*WLFGTGGGK[(Biotin-JJK—(O═)C(CH2)3C(═O)-JJ-NH(CH2)4—(S)—CH((Ac—VC*WEDSWGGEVC*FRYDPGGG)-NH)CONH2]—NH2: D1
Ac-AGPTWC*EDDWYYC*WLFGTGGGK[(Biotin-JJK—(O═)C(CH2)3C(═O)-JJ-NH(CH2)4—(S)—CH((Ac-AGPTWC*EDDWYYC*WLFGTJ)-NH)CONH2]—NH2: D2
Ac—VC*WEDSWGGEVC*FRYDPGGGK[(Biotin-JJK—(O═)C(CH2)3C(═O)-JJ-NH(CH2)4—(S—CH((Ac—VC*WEDSWGGEVC*FRYDPGGG)-NH)CONH2]—NH2: D3
Ac-AGPTWC*EDDWYYC*WLFGTJK[DOTA-JJK—(O═)C(CH2)3C(═O)-JJ-NH(CH2)4—(S)—CH((Ac—VC*WEDSWGGEVC*FRYDPGGG)-NH)CONH2]—NH2: D4
Ac—VC*WEDSWGGEVC*FRYDPGGGK(JJ-C(═O)(CH2)3C(═O)—K—NH(CH2)4—(S)—CH((Ac-AGPTWC*EDDWYYC*WLFGTGGG)-NH)CONH2)—NH2: D5
Ac-AGPKWC*EEDWYYC*MITGTGGGK(Ac GDSRVC*WEDSWGGEVC*FRYDPGGGK(—(O═)C(CH2CH2O)4CH2CH2NHC(═O)(CH2)3C(═O)NHCH2CH2(OCH2CH2)4C(═O)—)NH2)NH2: D4
Ac-AQDWYYDEILSMADQLRHAFLSGGGGGK{Ac-AQDWYYDEILSMADQLRHAFLSGGGGGK(J-Glut-)-NH2}K(Biotin-JJ)-NH2: D8
Ac-AQDWYYDEILSMADQLRHAFLSGGGGGK{[Ac-GDSRVC*WEDSWGGEVC*FRYDPGGGK(JJ-Glut-)]—NH2}K—NH2: D9
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{[Ac-GDSRVC*WEDSWGGEVC*FRYDPGGGK(JJ-Glut-NH(CH2)4—(S)—CH(PnAO6-Glut-NH)(C═O—)]—NH2}—NH2: D10
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{Ac—VC*WEDSWGGEVC*FRYDPGGGK[JJ-Glut-NH(CH2)4—(S)—CH(DOTA-JJ-NH—)(C═O)—]—NH2}—NH2: D11
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{[PnAO6-Glut-K(Ac—VC*WEDSWGGEVC*FRYDPGGGK(—C(═O)CH2(OCH2CH2)2OCH2C(═O)—)—NH2]}—NH2: D12
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{Ac—VC*WEDSWGGEVC*FRYDPGGGK[JJ-Glut-K(BOA)]—NH2}—NH2: D13
Ac-AQDWYYDEILSMADQLRHAFLSGGGGGK{PnAO6-Glut-K[Ac-GSDRVC*WEDSWGGEVC*FRYDPGGGK(JJ-Glut)-NH2]}—NH2: D14
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{[[Ac-GDSRVC*WEDSWGGEVC*FRYDPGGGKJJ-Glut]-NH2]-K(PnAO6-Glut)}-NH2: D15
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{PnAO6-Glut-K[Ac-GDSRVC*WEDSWGGEVC*FRYDPGGGK[—C(═O)CH2O(CH2CH2O)2CH2C(═O)NH(CH2)3O(CH2CH2O)2(CH2)3NH C(═O)CH2O(CH2CH2O)2CH2C(═O)—]—NH2]}—NH2: D16
Ac-AQDWYYDEILJGRGGRGGRGGK{K[Ac—VC*WEDSWGGEVC*FRYDPGGGK(JJ-Glut)-NH2]}—NH2: D17
Ac-APGTWC*DYDWEYC*WLGTFGGGK{PnAO6-Glut-K[Ac-GVDFRC*EWSDWGEVGC*RSPDYGGGK(JJ-Glut)-NH2]}—NH2: D18
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{Biotin-K[Ac—VC*WEDSWGGEVC*FRYDPGGGK(JJ-Glut)-NH2]}—NH2: D19
(-JJAGPTWC*EDDWYYC*WLFGTGGGK—NH2)-Glut-JJVC*WEDSWGGEVC*FRYDPGGG-NH2: D20
[-JJAGPTWC*EDDWYYC*WLFGTGGGK(PnAO6-Glut)-NH2]-Glut-JJVC*WEDSWGGEVC*FRYDPGGG-NH2: D21
Ac-GDSRVC*WEDSWGGEVC*FRYDPGGGK{JJ-Glut-JJ-AGPTWC*EDDWYYC*WLFGTGGGK—NH2}—NH2: D22
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{Ac—VC*WEDSWGGEVC*FRYDPGGGK[JJ-Glut-K(SATA)]-NH2}—NH2: D23 (D5 functionalized with the SATA (S-Acetylthioacetyl) group)
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{SATA-JJK[Ac—VC*WEDSWGGEVC*FRYDPGGGK(JJ-Glut)-NH2]}—NH2: D24
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{Ac-GDSRVC*WEDSWGGEVC *FRYDPGGGK[JJ-Glut-NH(CH2)4(S)—CH(NH2)C(═O)—]—NH2}—NH2: D25
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{(-Glut-JJ-VC*WEDSWGGEVC*FRYDPGGG-NH2)—K}—NH2: D26
Ac-AGPTWC*EDDWYYC*WLFGTGGGK{Ac—VC*WEDSWGGEVC*FRYDPGGGK[S(GalNAc-alpha-D)-G-S(GalNAc-alpha-D)-Glut-S(GalNAc-alpha-D)-G-S(GalNAc-alpha-D)-NH(CH2)4—(S)—CH(Biotin-JJNH—)C(═O)—]—NH2}—NH2: D27
Ac-GSPEMC*MMFPFLYPC*NHHAPGGGK{PnAO6-Glut-K[Ac-GSFFPC*WRIDRFGYC*HANAPGGGKJJ-Glut]-NH2}—NH2: D28 (A heterodimeric c-Met binder)
Ac-GSFFPC*WRIDRFGYC*HANAPGGGK{PnAO6-Glut-K[Ac-AQEWEREYFVDGFWGSWFGIPHGGGK(JJ-Glut)-NH2]}—NH2: D29 (A heterodimeric c-Met binder)
Ac-GSPEMC*MMFPFLYPC*NHHAPGGGK{PnAO6-Glut-K[Ac-GDYSEC*FFEPDSFEVKC*YDRDPGGGK(JJ-Glut)-NH2]}—NH2: D30 (A heterodimeric C-Met binder)
Ac-AQEPEGYAYWEVITLYHEEDGDGGK(Ac-AQAFPRFGGDDYWIQQYLRYTDGGK(—(O═)C(CH2CH2O)4CH2CH2NHC(═O)CH2CH2C(CH3)═NOCH2C(═O)NH(CH2CH2O)4CH2CH2C(═O)—)NH2)NH2: D31
Ac—VC*WEDSWGGEVC*FRYDPGGGK{[PnAO6-Glut-K(-Glut-JJ-NH(CH2)4—(S)—CH(Ac-AQDWYYDEILJGRGGRGGRGG-NH)C(═O)NH2]—NH2 }—NH2: D32
Ac-AGPTWC*EDDWYYC*WLFGTGGGK[Ac—VC*WEDSWGGEVC*FRYDPGGGK[SGS-Glut-SGS—(S)—NH(CH2)4—CH(Btn-JJ-NH)—C(═O)]—NH2]—NH2: D33
For the preparation of the dimer D5, after the coupling reaction of the individual peptides, 50 μL of hydrazine was added to the reaction mixture (to expose the lysine NεE-amino group) and the solution was stirred for 2 min. The reaction mixture was diluted with water (1.0 mL) and the pH was adjusted to 2 with TFA. This was then purified by the method described above.
3. Synthesis of D27
a. Synthesis of 1 and 3
Synthesis of the monomers were carried out as described in Method 5 on a 0.25 mmol scale employing as the starting resin Fmoc-GGGK(ivDde)NH—PAL-PEG-PS resin. The peptide resin was washed and dried before cleavage or further derivatization by automated or manual methods.
b. Procedure for Synthesis of 2 and 4
Appendage of Biotin-JJ, Lysyl, Glycyl and Serinyl(GalNAc(Ac)3-α-D moieties onto 1 and 3 was done by manual SPPS such as described in Method 6 and Method 8. The coupling of amino acids was carried out in DMF using HOBt/DIC activation (except for Ser(GalNAc(Ac)3-α-D). Fmoc removal was carried out with 20% piperidine in DMF. All couplings were 5-16 hours duration. After each coupling, the completion was confirmed by the Kaiser test. In the case of Ser(GalNAc(Ac)3-α-D, the coupling was performed in DMF employing HATU/DIEA as the coupling agent. In cases where the Kaiser test indicated unreacted amino groups the coupling was repeated. Removal of the N-terminal Fmoc group and cleavage from resin was performed. The crude peptide was precipitated in ether and washed twice with ether and dried under vacuum. The crude linear peptide was directly cyclized by dissolving the peptide in DMSO (40 mg/mL), adjusting the pH of the solution to 8 by addition of aqueous N-methylglucamine and stirring in air for 48 h at room temperature. The peptides were then purified employing gradient HPLC as described in Method 1 employing a Waters-YMC C-18 ODS preparative column (250 mm×4.6 mm i.d.). The pure product-containing fractions were combined and lyophilized to provide the needed peptides.
c. Procedure: Synthesis of D27—Compound 6
To a solution of glutaric acid bis-NHS ester (0.122 mmol, 10 equiv. Pierce Scientific Co.) in anhydrous DMF was added dropwise a solution of 4 in DMF (40 mg, 0.0122 mmol). DIEA was added to neutralize the trifluoroacetic acid bound to the peptide and N-hydroxysuccinimide formed during the reaction. This 0.7 mL solution was stirred for 4 h. The reaction was monitored by HPLC and mass spectroscopy. DMF was removed under vacuum. The excess diester was removed by addition of ethyl acetate which precipitated the peptide-monoester 5 while dissolving glutaric acid bis-NHS ester. The mixture was centrifuged and the liquid portion decanted. This was repeated twice. The residue was kept under vacuum for 10 min. The residue was dissolved in DMF and mixed with a solution of 2 (37 mg, 0.009 mmol) in DMF (pH 7). It was stirred at ambient temperature for 16 h. The volatiles were removed under high vacuum and the acetate functions were removed by treatment of the residue with 1 mL of hydrazine/MeOH (15/85, v/v) solution with stirring for 2.5 h at ambient temperature. Acetone was added to quench the excess of hydrazine and the volatiles were removed under vacuum. The resulting residue was dissolved in DMSO and purified by preparative HPLC as described above to provide 9 mg of the pure material.
4. Synthesis of D32
Preparation of Ac—VC*WEDSWGGEVC*FRYDPGGGK{[PnAO6-Glut-K(-Glut-JJ-NH(CH2)4—(S)—CH(Ac-AQDWYYDEILJGRGGRGGRGG-NH)C(═O)NH2]—NH2}—NH2: D32
Preparation of Ac—VC*WEDSWGGEVC*FRYDPGGGK[K(PnAO6)]—NH2 (3)
Ac—VC*WEDSWGGEVC*FRYDPGGGK[K(iVDde)]-NH2 (1), a new P6 sequence derivative, 48 mg, was prepared by the procedures of Method 5. The compound was dissolved in DMF (0.85 mL) and treated with compound B, and DIEA (7 μL) was added to maintain the basicity of the reaction mixture. The progress of the reaction was monitored by HPLC and mass spectroscopy. At the completion of the reaction (20 h), the volatiles were removed in vacuo. The residue which consists of compound 2 was treated with 10% hydrazine in DMF (5 μL) for 10 min. HPLC analysis and mass spectroscopy indicated the completion of the reaction. The mixture then was applied directly to a Waters Associates XTerra MSC18 preparative HPLC column (50 mm×19 mm i.d.) and purified by elution with a linear gradient of acetonitrile into water (both containing 0.1% TFA) to provide 11 mg of pure compound 3.
Preparation of the Dimer D32 from Compound 3 and Ac-AQDWYYDEIL-Adoa-GRGGRGGRGGGK(Adoa-Adoa)-NH2 Compound 4, (New F3 derivative).
Disuccinimidyl glutarate (12 mg) was dissolved in DMF (500 μL), and DIEA was added (1 μL). Compound 3 in DMF was added into the DMF solution of disuccinimidyl glutarate/DIEA. The mixture was stirred for 2.5 h. HPLC and mass spectroscopy indicated the completion of the reaction. The volatiles were removed in vacuo and the residue was washed with ether (3×) to remove the unreacted bis-NHS ester. The residue was dried, re-dissolved in anhydrous DMF and treated with the Compound 4, Ac-AQDWYYDEIL-Adoa-GRGGRGGRGGGK(Adoa-Adoa)-NH2, which was prepared by Method 5 and Method 8, in the presence of 2 equiv. of DIEA. The reaction was allowed to proceed for 20 h. The mixture then was applied directly to a Waters Associates MSC 18 reverse phase preparative (50 mm×19 mm i.d.) HPLC column and purified by elution with a linear gradient of acetonitrile into water (both containing 0.1% TFA) to provide 2 mg of D32.
5. Synthesis of D33
Synthesis of Ac-AGPTWC*EDDWYYCWLFGTGGGK[Ac—VC*WEDSWGGEVC*FRYDPGGGK[SGS-Glut-SGS—(S)—NH(CH2)4—CH(Biotin-JJ-NH)—C(═O)]—NH2]—NH2: D33
Structures of Monomer Compound 2 and Monomer Compound 4 Employed in the Synthesis of D33
a. Synthesis of Monomer Peptide 1 and Monomer Peptide 3
Synthesis of the monomers 1 and 3 were carried out using the procedures of Method 5 for the ABI 433A synthesizer.
b. Synthesis of Monomer Peptide 2 and Monomer Peptide 4
Appendage of Biotin-JJ, Lys, Gly and Ser onto 1 and 3 as appropriate was done by SPPS manually using the appropriate Fmoc amino acids, Biotin-JJ and Fmoc-J (J=8-amino-3,6-dioxaoctanoic acid) according to the procedures of Methods 6, 7 and 8. Cleavage of the peptides from the resin and processing of the crude peptides was carried out as described in Method 1 for the synthesis of peptides. Cyclization of the cysteine moieties to form the cyclic disulfide peptides was performed by the procedures of Method 9.
Purification of the peptides was carried out using a Shimadzu LC-10A HPLC system and a YMC C-18 ODS preparative HPLC column employing a linear gradient elution of acetonitrile (0.1% TFA) into 0.1% aqueous TFA. Pure fractions were combined and lyophilized.
The dimer D33 was prepared using monomer compound 4 to generate in situ the activated monomer compound 5 which was then reacted with monomer compound 2 using the procedures described in Method 13 and Example 9, entitled: ‘Preparation of Heterodimer Containing Constructs.’ Compound D33 was purified by preparative reverse phase HPLC using a Waters-YMC C-18 ODS column to provide 10 mg of the dimer D33.
6. Analytical Data
The HPLC analysis data and mass spectral data for the dimeric peptides D1-5 and D8-30 and 32-33 identified above, as well as that for peptide components of dimer D27, are given in Table 6 below.
6. HPLC Analysis Systems
The following experiment assessed the ability of KDR-binding polypeptides, homodimers and heterodimers of the invention to compete with 125I-labeled VEGF for binding to KDR expressed by transfected 293H cells.
1. Protocol
293H cells were transfected with the KDR cDNA or mock-transfected by standard techniques described herein. The cells were incubated with 125I-VEGF in the presence or absence of competing compounds (at 10 μM, 0.3 μM, and 0.03 μM). After washing the cells, the bound radioactivity was quantitated on a gamma counter. The percentage inhibition of VEGF binding was calculated using the formula [(Y1-Y2)×100/Y1], where Y1 is specific binding to KDR-transfected 293H cells in the absence peptides, and Y2 is specific binding to KDR-transfected 293H cells in the presence of peptide competitors. Specific binding to KDR-transfected 293H cells was calculated by subtracting the binding to mock-transfected 293H cells from the binding to KDR-transfected 293H cells.
2. Results
As shown in
The ability of KDR-binding multimeric constructs, including heteromultimers of the invention, to inhibit VEGF induced activation (phosphorylation) of KDR was assessed using the following assay (see also Example 4 above).
1. Protocol
Dishes of nearly confluent HUVECs were placed in basal medium lacking serum or growth factors overnight. The next day, the dishes in group (c) below were pretreated for 15 min in basal medium with a KDR-binding peptide, then the cells in the dishes in groups (a), (b), and (c) were placed in fresh basal medium containing:
After 5 min of treatment, lysates were prepared from the dishes. Immunoprecipitated KDR from the lysates was analyzed sequentially by immunoblotting for phosphorylation with an anti-phosphotyrosine antibody, and for total KDR with an anti-KDR antibody (to control for sample loading).
2. Results
As shown in
The following experiment assessed the ability of D1, a heteromultimer of the invention, to block the VEGF-induced migration of HUVECs in culture.
1. Protocol
Serum-starved HUVECs were placed, 100,000 cells per well, into the upper chambers of BD Matrigel-coated FluoroBlok 24-well insert plates (#354141). Basal medium, containing either nothing or different attractants such as VEGF (10 ng/mL) or serum (5% FBS) in the presence or absence of potential VEGF-blocking/inhibiting compounds, was added to the lower chamber of the wells. After 22 hours, quantitation of cell migration/invasion was achieved by post-labeling cells in the insert plates with a fluorescent dye and measuring the fluorescence of the invading/migrating cells in a fluorescent plate reader. The VEGF-induced migration was calculated by subtracting the migration that occurred when only basal medium was placed in the lower chamber of the wells.
2. Results
VEGF induced a large increase in endothelial cell migration in the assay, which was potently blocked by D1. At 5 nM D1, the YEGF-stimulated endothelial cell migration was 84% blocked (see
The following experiments describe methods used to prepare Tc, In, Lu, and I-labeled compounds.
1. Preparation of 99mTc-P12-P
SnCl2.2H2O (20 mg) was dissolved in 1 mL of 1 N HCl, and 10 μL of this solution was added to 1 mL of a DTPA solution that was prepared by dissolving 10 mg of Ca Na2 DTPA. 2.5 H2O (Fluka) in 1 mL of water. The pH of the stannous DTPA solution was adjusted to pH 6-8 using 1N NaOH. 50 μg of P12-P (Ac-AGPTWC*EDDWYYC*WLFGTGGGK(PnAO6-NH—(O═)C(CH2)3C(═O)-JJ)-NH2) in 50 μL of 10% DMF was mixed with 20 μL of 99mTcO4− (2.4 to 4 mCi, Syncor), followed by 100 μL of the stannous Sn-DTPA solution. After 30 minutes at RT, the radiochemical purity (RCP) was 93%. The product was purified on a Supelco Discovery C16 amide column (4×250 mm, 5 μm pore size) eluted at a flow rate of 0.5 mL/min using an aqueous/organic gradient of 1 g/L ammonium acetate in water (A) and acetonitrile (B). The following gradient was used: 30.5% B to 35% B in 30 minutes, ramp up to 70% B in 10 min. The compound, which eluted at a retention time of 21.2 minutes was collected into 500 μL of 50 mM citrate buffer (pH 5.2) containing 1% ascorbic acid and 0.1% HSA, and acetonitrile was removed using a Speed Vacuum (Savant). After purification, the compound had an RCP of >98%.
2. Preparation of 111In-P12-XDT
50 μg of P12-XDT (Ac-AGPTWCEDDWYYCWLFGTJK(JJ-DOTA)-NH2) in 50 μL of 10% DMF was mixed with 111InCl3 (50 μL, 400 μCi, Mallinckrodt) and 100 μL of 0.2M ammonium acetate or citrate buffer at a pH of 5.3. After being heated at 85° C. for 45 minutes, the radiochemical purity (RCP) ranged from 44% to 52.2% as determined using HPLC. The 111In-labeled compound was separated from unlabeled ligand using a Vydac C18 column (4.6×25 cm, 5 micron pore size) under the following conditions: aqueous phase, 1 g/L ammonium acetate (pH 6.8); organic phase, acetonitrile. Gradient: 23% org. to 25% org. in 30 minutes, up to 30% org. in 2 minutes, hold for 10 minutes. The compound, which eluted at a retention time of 20.8 min, was collected into 200 μL of 50 mM citrate buffer (pH 5.2) containing 1% ascorbic acid and 0.1% HSA, and the acetonitrile was removed using a Speed Vacuum (Savant). After purification the compound had an RCP of >93%.
3. Preparation of 111In-D4
A histidine buffer was prepared by adjusting a 0.1M solution of histidine (Sigma) to pH 6.25 with concentrated ammonium hydroxide. Ammonium acetate buffer was prepared by adjusting a 0.2 M solution of ammonium acetate (99.99%, Aldrich) to pH 5.5 using concentrated HCl (J. T. Baker, Ultra Pure). High purity 111InCl3 (100 μL, 1.2 mCi, Mallinckrodt) was added to D4 (200 μg in 200 of 50% DMF, 10% DMSO, 20% acetonitrile and 20% water), followed by addition of 300 μL of histidine buffer. The final pH was 5.5. After incubation of the reaction mixture at 85° C. for 45 minutes, the RCP was 20%.
Alternatively, 111InCl3 provided with a commercially available OctreoScan™ Kit(134 μL, 0.6 mCi, Mallinkrodt) was added to D4 (135 μg) in 162 μL of 0.2M ammonium acetate buffer. The final pH was 5.5. After incubation of the reaction mixture at 85° C. for 45 min. the RCP was 20%.
4. Preparation of 125I-D5
D5 (200 μg), in 30 μL of DMF that had been previously adjusted to pH 8.5-9.0 using diisopropyl amine, was added to 1 mCi of mono-iodinated 125I Bolton-Hunter Reagent (NEX-120, Perkin-Elmer) that had been evaporated to dryness. The vial was shaken and then incubated on ice for 30 minutes with occasional shaking. After this time, the RCP was 23%. 125I-D5 (shown below) was purified by HPLC at a flow rate of 1 mL/min using a Vydac C18 column (4.6×250 mm, 5 micron pore size) under the following conditions. Aqueous phase: 0.1% TFA in water; organic phase: 0.085% TFA in acetonitrile. Gradient: 30% org. to 36% org. in 30 minutes, up to 60% org. in 5 minutes, hold for 5 minutes. The compound was collected into 200 μL of 50 mM citrate buffer (pH 5.2) containing 1% ascorbic acid and 0.1% HSA. Acetonitrile was removed using a Speed Vacuum (Savant). The resulting compound had an RCP of 97%.
5. Preparation of 177Lu-D11
D11 (5 μL of a ˜1 μg/μL solution in 0.05N NH4OH/10% EtOH) was added to a glass insert microvial containing 80 μL of 0.2M NaOAc buffer, pH 5.6. Enough 177Lu was added to bring the ligand: Lu ratio to ≦2:1 (1-5 mCi). The vial was crimp-sealed and heated at 100° C. for 15-20 minutes, cooled for 5 minutes, and treated with 3 μL of 1% Na2EDTA. 2H2O in H2O. The entire reaction mixture was injected onto a Supelco Discovery RP Amide C16 column (4 mm×250 mm×5 μm). The following HPLC conditions were used: Column temperature=50° C., Solvent A=H2O w/0.1% TFA, Solvent B=ACN w/0.085% TFA, gradient 0.6/0.25 mL/min A/B at t=0 minutes to 0.5/0.4 mL/min A/B at t=60 minutes. The retention time for D11 was ˜40 minutes; that of 177Lu-D11 1334 was ˜42 minutes. The radioactive peak was collected into 0.7 ml of 0.05M citrate buffer, pH 5.3 containing 0.1% Human Serum Albumin Fraction V and 1.0% Ascorbic Acid, and the mixture was spun down in a Savant Speed Vac to remove organic solvents. Radiochemical purities of greater than 80% were obtained.
6. Preparation of 99mTc-D12
SnCl2.2H2O (20 mg) was dissolved in 1 mL of 1 N HCl, and 10 μL of this solution was added to 1 mL of a DTPA solution that was prepared by dissolving 10 mg of Ca Na2 DTPA 2.5 H2O (Fluka) in 1 mL of water. D12 (100 μg in 100 μL of 50% DMF) was mixed with 75 μL of 0.1 M, pH 9 phosphate buffer and 60 μL of 99mTcO4− (2.4 to 4 mCi, Syncor), followed by 100 μL of the stannous Sn-DTPA solution. After 10 min at 40° C., the radiochemical purity (RCP) was 16%. The product was purified on a Supelco Discovery C16 amide column (4×250 mm, 5 1 μm pore size) eluted at a flow rate of 0.7 mL/min using an aqueous/organic gradient of 0.1% TFA in water (A) and 0.085% TFA in acetonitrile (B). The following gradient was used: 30% B to 42% B in 36 min, ramp up to 70% B in 10 min. The compound, which eluted at a retention time of 37.1 min was collected into 500 μL of 50 mM citrate buffer (pH 5.2) containing 0.2% HSA, and acetonitrile was removed using a Speed Vacuum (Savant). After purification, the compound had an RCP of >90%.
7. Preparation of 99mTc-D14
SnCl2.2H2O (20 mg) was dissolved in 1 mL of 1 N HCl, and 10 μL of this solution was added to 1 mL of a DTPA solution that was prepared by dissolving 10 mg of Ca Na2 DTPA 2.5 H2O (Fluka) in 1 mL of water. D 14 (100 μg in 100 μL of 50% DMF) was mixed with 50 μL of 99mTcO4− (6 mCi, Syncor) and 125 μL of 0.1M phosphate buffer; pH 9 followed by 100 μL of the stannous Sn-DTPA solution. After 15 min at 40°, the radiochemical purity (RCP) was 21%. The product was purified on a Vydac peptide C18 column (4.6×250 mm) eluted at a flow rate of 1 mL/min using an aqueous/organic gradient of 0.1% TFA in water (A) and 0.085% TFA in acetonitrile (B). The following gradient was used: 30% B to 45% B in 40 min. The compound, which eluted at a retention time of 34.9 min., was collected into 500 μL of 50 mM citrate buffer (pH 5.3) containing 0.2% HSA, and acetonitrile was removed using a Speed Vacuum (Savant). After purification, the compound had an RCP of 92.5%.
8. Preparation of 99mTc-D32
SnCl2.2H2O (20 mg) was dissolved in 1 mL of 1 N HCl, and 10 μL of this solution was added to 1 mL of a DTPA solution that was prepared by dissolving 10 mg of Ca Na2DTPA 2.5 H2O (Fluka) in 1 mL of water. D32 (100 μg in 100 μL of DMF) was mixed with 150 μL of 0.1 M pH 8 phosphate buffer and 50 μL of 99mTcO4−(5.2 mCi, Syncor), followed by 100 μL of the stannous Sn-DTPA solution. After 15 min at 100° C., the radiochemical purity (RCP) was 13%. The product was purified on a Vydac C18 peptide column (4.6×250 mm, 5 μm pore size) eluted at a flow rate of 1 mL/min using an aqueous/organic gradient of 0.1% TFA in water (A) and 0.085% TFA in acetonitrile (B). The following gradient was used: 10% B to 50% B in 30 min, hold 50% B for 5 min, back to 70% B in 5 min. The compound, which eluted at a retention time of 33.2 min., was collected into 3 mL of 50 mM citrate buffer (pH 5.5) containing 0.2% HSA, and acetonitrile was removed using a Speed Vacuum (Savant). After purification, the compound had an RCP of 92.4%.
An experiment was performed to test the ability of 125I-labeled D5 to bind to KDR-transfected 293H cells. In this experiment, different amounts of 125I-labeled D5 (1-4 μCi/ml, labeled with 125 I-Bolton-Hunter reagent and HPLC-purified) were incubated with mock & KDR-transfected 293H cells in 96-well plates for 1 h at room temperature. Binding was performed with and without 40% mouse serum to evaluate the serum effect on binding to KDR-transfected cells. After washing away the unbound compound, the cells in each well were lysed with 0.5 N NaOH and the lysates were counted with a gamma counter.
The results of this experiment are summarized in
A peptide heterodimer (D6, shown below) was prepared as previously described in Example 9 using glutaric acid bis N-hydoxysuccinimidyl ester. The heterodimer was tested for binding to KDR-Fc using Biacore and an affinity constant was determined as follows.
Three densities of KDR-Fc were cross-linked to the dextran surface of a CM5 sensor chip by the standard amine coupling procedure (0.5 mg/mL solution diluted 1:100 or 1:50 with 50 mM acetate, pH 6.0). Flow cell 1 was activated and then blocked to serve as a reference subtraction. Final immobilization levels achieved:
Experiments were performed in PBS buffer (5.5 mM phosphate, pH 7.65, 0.15 M NaCl)+0.005% P-20 (v/v)). D6 was diluted to 250 nM in PBS and serial dilutions were performed to produce 125, 62.5, 31.3 15.6, 7.8, and 3.9 nM solutions. All samples were injected in duplicate. For association, peptides were injected at 20 μL/min for 12.5 minutes using the kinject program. Following a 10 minute dissociation, any remaining peptide was stripped from the KDR surface with a quickinject of 50 mM NaOH+1M NaCl for 12s at 75 μL/min. Sensorgrams were analyzed using BIAevaluation software 3.1 and a hyperbolic double rectangular regression equation in SigmaPlot 6.0. Heterodimer steady state binding affinities (KDAV) were determined at all three KDR immobilization densities (Table 7).
From this data, it appears that at the higher immobilization densities, the heterodimer binds KDR with a sub-nanomolar affinity (˜0.6 nM).
To assess the in-vivo clearance of this peptide heterodimer, a small amount of material was iodinated using iodogen and Na 125I according to standard protocols (Pierce). Radio iodination was done in the Radiation Safety lab, within the designated hood. One tube coated with the iodogen reagent was pre-wet with 1 mL of 25 mM Tris, 0.4M NaCl, pH 7.5. This was discarded and 100 μl of the same buffer added. Using a Hamilton syringe 11 μL of the 125I-NaI was transferred to the reaction tube. Based on original estimates of the Na 125I concentration of 143.555 mCi/ml, the 11 μL should contain about 1.5 mCi. No dose calibrator was in the room. After addition, the sample was swirled and set in a lead pig to incubate for 6 min with a swirl every 30 sec. After 6 min, the entire sample was transferred to the peptide that was in an Eppendorf tube. The sample was swirled and set to incubate for 8 min, with a swirl every 30 sec. After 8 min the reaction was quenched (terminated) with tyrosine (10 mg/mL, a saturated solution), allowed to sit for 5 min, and then 2 μL was removed for a standard.
For purification a 10 mL column of the D-salt polyacrylamide 1800 was used to separate the labeled peptide from labeled tyrosine. The column was first washed with 10 mL saline, then 5 mL of 25 mM Tris, 0.4M NaCl, pH 7.5 containing 2.5% HSA to block non-specific sites. After the HSA buffer wash, the column was eluted with 60 mL of the 25 mM Tris, 0.4 M NaCl buffer, and the column was stored overnight at 4° C. The labeled sample contained 1.355 mCi, as determined by the dose calibrator. The 2 μL sample that was removed as a standard contained 8.8 μCi. The peptide sample was applied to the D-salt 1800 column and eluted with the Tris/NaCl buffer, pH 7.5. The flow was controlled by applying single 0.5 ml aliquots for each fraction, #1-14, and then 1.0 mL for fractions 25-43. The peak of activity in fractions # 9, 10, and 11, was assumed to be the peptide. The radioactivity in 24 through ˜40 is likely the labeled tyrosine. From this purification, fractions #9-12 were pooled together and used for the subsequent clearance study (concentration of 125I-D6 in pool is 7.023 μg/mL; 100 μL=0.702 μg with 8.6 μCi).
A total of 15 mice were injected with 100 μL 125I-D6 and mice (in sets of 3) were sacrificed at the following time points: 0, 7, 15, 30, 90 minutes. Actual activity injected was about 6 μCi. With 6 μCi injected the corresponding peptide administered was ˜0.5 μg per animal. Once sacrificed, the counts were determined in a 50 μL plasma sample from each animal. For each set of three animals at each time point, the counts were averaged, converted to % injected dose/ml plasma (ID %/mL), and then plotted to assess the rate of clearance (
Besides taking counts from the plasma samples, larger volumes of plasma were taken from mice sacrificed at the 0, 30, and 90 minute time points. These samples were injected onto a Superdex peptide column (Pharmacia) coupled to a radioactivity detector to assess the association of the peptide with serum proteins (
To help assess the potency of the peptide as an anti-angiogenesis inhibitor, D6 was tested in an endothelial cell proliferation assay using HUVECs and BrdU detection. Briefly, freshly isolated HUVECs (between p3-6) were cultured in RPMI+10% FCS+1% antibiotics+1% 1-glutamin+0.4% BBE (bovine brain extract) and seeded per well, 5000-10000/well in 100 μL. The cells were allowed to recover for 24 h prior to use. Then the cells were washed with PBS twice and treated for 48 h with anti-VEGF antibody (positive control) or peptides A, B and C (0.1 and 10 μg/mL) in RPMI+0.1% BSA+1% 1-glutamin. The following 6 variables were tested in 2 series (n=4):
Note: Background binding was determined by omitting the anti-BrdU antibody in 4 wells with control cells (cultured in complete medium; EBM+BulletKit) and by complete labeling of cells that was not exposed to BrdU.
Of the two KDR-binding constructs tested (D6 and P12-G (Ac-AGPTWC*EDDWYYC*WLFGT-GGGK—NH2)) as shown in
Using BIAcore, determine the binding constants of peptide dimers D1 (a heterodimer of P12-G and a truncated form of P6-D) and D7 (a heterodimer of P5-D and P6-D) for murine KDR-Fc.
1. Procedure
Three densities of recombinant murine KDR-Fc were cross-linked to the dextran surface of a CM5 sensor chip by the standard amine coupling procedure (0.5 mg/mL solution diluted 1:100 or 1:40 with 50 mM acetate, pH 6.0). Flow cell 1 was activated and then blocked to serve as a reference subtraction. Final immobilization levels achieved:
Experiments were performed in PBS buffer (5.5 mM phosphate, pH 7.65, 0.15 M NaCl)+0.005% P-20 (v/v)). P12-G, run as a control, was diluted to 125 nM in PBS. Serial dilutions were performed to produce 62.5, 31.3, 15.6, 7.8, and 3.9nM solutions. D1 and D7 were diluted to 50 nM in PBS and serial dilutions were performed to produce 25, 12.5, 6.25, 3.13, 1.56, 0.78, and 0.39 nM solutions. All samples were injected in duplicate. For association, peptides were injected at 30 μL/min for 3 minutes using the kinject program. Following a 10 minute dissociation, any remaining peptide was stripped from the rmKDR-Fc surface with a quickinject of 50 mM NaOH+1M NaCl for 12s at 75 μL/min.
Sensorgrams were analyzed using the simultaneous ka/kd fitting program in the BIAevaluation software 3.1. The Results are shown in Table 8 and
#KD1 is a calculated KD based on kd1/ka1
‡KD2 is a calculated KD based on kd2/ka1 (i.e., avidity factor)
The following experiments showed that heteromultimers can display much greater biological potency than a monomeric peptide with similar binding affinity to the same target.
1. Protocol Experiment 1
293H cells were transfected with the KDR cDNA or mock-transfected by standard techniques described in Example 6. The cells were incubated with 125I-VEGF in the presence or absence of PG-1 (Ac-ERVTTCWPGEYGGVECYSVAY—NH2) (SEQ ID NO: 30) or D1 (at 300, 30, 3, and 0.3 nM). After washing the cells, the bound radioactivity was quantitated on a gamma counter. The percentage inhibition of VEGF binding was calculated using the formula [(Y1-Y2)×100/Y1], where Y1 is specific binding to KDR-transfected 293H cells in the absence peptides, and Y2 is specific binding to KDR-transfected 293H cells in the presence of peptide competitors. Specific binding to KDR-transfected 293H cells was calculated by subtracting the binding to mock-transfected 293H cells from the binding to KDR-transfected 293H cells.
2. Protocol Experiment 2
Serum-starved HUVECs were placed, 100,000 cells per well, into the upper chambers of BD fibronectin-coated FluoroBlok 24-well insert plates. Basal medium, with or without VEGF (10 ng/mL) in the presence or absence of increasing concentrations of PG-1 or D1, was added to the lower chamber of the wells. After 22 hours, quantitation of cell migration/invasion was achieved by post-labeling cells in the insert plates with a fluorescent dye and measuring the fluorescence of the invading/migrating cells in a fluorescent plate reader. VEGF-stimulated migration was derived by subtracting the basal migration measured in the absence of VEGF
3. Results Experiment 1
As shown in
4. Results Experiment 2
In spite of the fact that both PG-1 and D1 potently block 125I-VEGF binding to KDR-expressing cells to the same degree (
In this Example, the ability of Tc-labeled D10 to bind KDR was assessed using KDR-transfected 293H cells. The results show that Tc-labeled D10 bound significantly better to KDR transfected 293H cells than to mock transfected 293H cells, and good binding was maintained in the presence of 40% mouse serum. In addition, a derivative of Tc-labeled D10 with its amino acid sequence scrambled, D 18, was shown to possess no affinity for KDR-expressing cells, confirming the specificity of the D10 binding to those cells.
1. Synthesis of 99mTc-Labeled Peptides
a. Preparation of 99mTc-D10:
SnCl2.2H2O (20 mg) was dissolved in 1 mL of 1 N HCl, and 10 μL of this solution was added to 1 mL of a DTPA solution that was prepared by dissolving 10 mg of Ca Na2 DTPA 2.5 H2O (Fluka) in 1 mL of water. D10 (100 μg in 100 μL of 50% DMF) was mixed with 75 μL of 0.1 M, pH 9 phosphate buffer and 50 μL of 99mTcO4− (2.4 to 5 mCi, Syncor), followed by 100 μL of the stannous Sn-DTPA solution. After 15 min at RT, the radiochemical purity (RCP) was 72%. The product was purified on a Supelco Discovery C 16 amide column (4×250 mm, 5 μm pore size) eluted at a flow rate of 0.7 mL/min using an aqueous/organic gradient of 0.1% TFA in water (A) and 0.085% TFA in acetonitrile (B). The following gradient was used: 30% B to 42% B in 36 min, ramp up to 70% B in 10 min. The compound, which eluted at a retention time of 32 min, was collected into 500 μL of 50 mM citrate buffer (pH 5.2) containing 0.2% HSA, and acetonitrile was removed using a Speed Vacuum (Savant). After purification, the compound had an RCP of >90%.
b. Preparation of 99mTc-D18:
SnCl2.2H2O (20 mg) was dissolved in 1 mL of 1 N HCl, and 10 μL of this solution was added to 1 mL of a DTPA solution that was prepared by dissolving 10 mg of Ca Na2 DTPA 2.5 H2O (Fluka) in 1 mL of water. D18 (100 μg in 100 μL of 50% DMF) was mixed with 50 μL of 0.1 M, pH 9 phosphate buffer and 90 μL of 99mTcO4− (14 mCi, Syncor), followed by 100 μL of the stannous Sn-DTPA solution. The reaction was warmed for 20 minutes at 37° C. The entire reaction was injected on a Vydac 218TP54 C18 column (4.6×250 mm, 5 μm silica) and eluted at a flow rate of 1.5 mL/min using an aqueous/organic gradient of 0.1% TFA in water (A) and 0.085% TFA in acetonitrile (B). The following gradient was used: 32% to 39% B in 30 minutes, ramp up to 80% B in 2 min. The free ligand eluted at a retention time of 19 minutes. The complex, which eluted at 24 minutes, was collected into 500 μL of 50 mM citrate buffer (pH 5.3) containing 0.1% HSA and 1% Ascorbic Acid. Acetonitrile & excess TFA were removed using a Speed Vacuum (Savant) for 40 minutes. After purification, the compound had an RCP of 93%.
2. Transfection of 293H Cells
293H cells were transfected using the protocol described in Example 6. Transfection was done in black/clear 96-well plates (Becton Dickinson, cat. # 354640). The cells in one half of the plate (48 wells) were mock-transfected (with no DNA) and the cells in the other half of the plate were transfected with KDR cDNA. The cells were 80-90% confluent at the time of transfection and completely confluent the next day, at the time of the assay; otherwise the assay was aborted.
3. Preparation of Opti-MEMI Media with 0.1% HSA
Opti-MEMI was obtained from Invitrogen (cat. # 11058-021) and human serum albumin (HSA) was obtained from Sigma (cat. # A-3782). To prepare opti-MEMI media with 0.1% HSA, 0.1% w/v HSA was added to opti-MEMI, stirred at room temperature for 20 minutes, and then filter sterilized using 0.2 μM filter.
4. Preparation of Tc-Labeled Peptide Dilutions for the Assay
Stock solutions of Tc-labeled D 10 and D 18 were diluted in opti-MEMI with 0.1% HSA to provide solutions with final concentrations of 1.25, 2.5, 5.0, and 10 μCi/mL of each Tc-labeled heterodimer. A second set of dilutions was also prepared using a mixture of 40% mouse serum/60% opti-MEMI with 0.1% HSA as the diluent.
5. Assay to Detect the Binding of the Tc-Labeled Heterodimers
Cells were used 24 h after transfection, and to prepare the cells for the assay, they were washed 1× with 100 μL of room temperature opti-MEMI with 0.1% HSA. After washing, the opti-MEMI with 0.1% HSA was removed from the plate and replaced with 70 μL of 1.25, 2.5, 5.0, and 10 μCi/mL of Tc-labeled D10 or D18 (prepared as above with both diluent solutions). Each dilution was added to three separate wells of mock and KDR-transfected cells. After incubating at room temperature for 1 h, the plates were washed 5 times with 100 μL of cold binding buffer (opti-MEMI with 0.1% HSA). 100 μL of solubilizing solution (0.5 N NaOH) was added to each well, and the plates were incubated at 37° C. for 10 minutes. The solubilizing solution in each well was mixed by pipeting up and down, and transferred to 1.2 mL tubes. Each well was washed once with 100 μL of solubilizing solution and the washes were added to the corresponding 1.2 mL tube. Each 1.2 mL tube was then transferred to a 15.7 mm×100 cm tube to be counted in an LKB Gamma Counter.
6. Binding of Tc-Labeled Heterodimers to KDR Transfected Cells
The ability of Tc-labeled D10 and D 18 to bind specifically to KDR was demonstrated using transiently transfected 293H cells. As shown in
In this Example, the ability of Lu-labeled D13 to bind KDR was assessed using KDR-transfected 293H cells. The results show that Lu-labeled D13 bound significantly better to KDR transfected 293H cells than to mock transfected 293H cells, and good binding was maintained in the presence of 40% mouse serum.
1. Synthesis of 177Lu-labeled Peptide
a. Preparation of 177Lu-D13
D13 (306 μg) was added to a 2-mL autosampler vial with a ˜450 μL conical insert and dissolved in 0.01N NH4OH (50 μL). To this was added 300 μL of 0.5M Ammonium Acetate containing stabilizers. A 6.8 μL aliquot of 177LuCl3 in 0.05N HCl (39.3 mCi) was added, the vial was crimp-sealed, warmed for 15 min at 37° C., cooled for ˜5 minutes, and 10 μL of 1% Na2EDTA 2H2O in H2O was added. A 350 μL aliquot of the reaction mixture was injected onto a Supelco Discovery RP Amide C16 column (4 mm×250 mm×5 μm). The following HPLC conditions were used: Column temperature=37° C., Solvent A=H2O containing 2 g/L NH4OAc buffer, pH 7.0, Solvent B=80% ACN/20% H2O, gradient 0.56/0.24 mL/min A/B at t=0 minutes to 0.47/0.33 mL/min A/B at t=30 minutes. The retention time for D13 was ˜28 minutes; the retention time for 177Lu-D 13 was ˜29 minutes. The radioactive peak was collected into 1 mL of a buffer containing stabilizers, final pH=7.6 adjusted with Sodium Hydroxide. It was then spun down ˜40 minutes using a Speed Vacuum (Savant) to remove ACN. The RCP of the isolated product was 86%.
2. Transfection of 293H Cells
293H cells were transfected using the protocol described in Example 6. Transfection was done in black/clear 96-well plates (Becton Dickinson, cat. # 354640). The cells in one half of the plate (48 wells) were mock-transfected (with no DNA) and the cells in the other half of the plate were transfected with KDR cDNA. The cells were 80-90% confluent at the time of transfection and completely confluent the next day, at the time of the assay; otherwise the assay was aborted.
3. Preparation of Opti-MEMI Media with 0.1% HSA
Opti-MEMI media with 0.1% HAS was prepared as in Example 18.
4. Preparation of Lu-Labeled Peptide Dilutions for the Assay
A stock solution of Lu-labeled D13 was diluted in opti-MEMI with 0.1% HSA to provide solutions with final concentrations of 1.25, 2.5, 5.0, and 10 μCi/mL of labeled heterodimer. A second set of dilutions was also prepared using a mixture of 40% mouse serum/60% opti-MEMI with 0.1% HSA as the diluent.
5. Assay to Detect the Binding of the Lu-Labeled Heterodimers
This was carried out as detailed in Example 18 except that Lu-labeled D13 was used in place of the Tc-labeled heterodimers.
6. Binding of Lu-Labeled Heterodimer to KDR Transfected Cells
The ability of Lu-labeled D13 to bind specifically to KDR was demonstrated using transiently-transfected 293H cells. As shown in
1. Experiment A
The following experiment assessed the specificity of the binding of peptide-conjugated microbubbles to KDR-expressing cells.
a. Protocol
293H cells were transfected with KDR cDNA. The transfected cells were incubated with a suspension of peptide-conjugated microbubbles in presence or absence of the corresponding free peptide (between 100 μM to 3 nM). Competition was also performed using a non-binding control peptide as a competing compound. At the end of the incubation, the transfected cells were rinsed three times in PBS and examined under a microscope. Binding of the conjugated bubbles was quantified and expressed as a percent of the surface covered by the targeted microbubbles.
b. Results
Microbubbles conjugated to a KDR-binding dimer, D23, or monomer, P12, were competed off by the corresponding free KDR-specific peptide whereas the presence of control peptide had no effect. Representative curves obtained by plotting the fraction of residual binding as a function of the competitor concentration are shown in
2. Experiment B
The following experiment compares the binding efficiency of monomers and dimers conjugated to microbubbles in the KDR-transfected cell assay.
a. Protocol
293H cells were transfected with KDR cDNA. The transfected cells were incubated with a suspension of microbubbles conjugated to different peptides (monomers or dimers) in the presence or absence of increasing concentrations of free dimer (at 1000, 300, 100, 30, 10, 3, 1 nM). At the end of the incubation, the transfected cells were rinsed three times in PBS and examined under a microscope. Binding of the conjugated bubbles was quantified and expressed as a percentage of the surface covered by the targeted microbubbles.
b. Results
Microbubbles conjugated to a KDR-specific dimer, D23, were more resistant to competition and less easily displaced by the corresponding free dimeric peptide than microbubbles conjugated to KDR-specific monomers P13 and P12. Examplary curves obtained by plotting the fraction of residual binding as a function of the competitor concentration are shown in
3. Experiment C—In Vitro Binding of Heteromultimers and Dimers Compared to Multimeric Monomers
The following experiment compares the binding efficiency of mixed monomers, dimers and monomers conjugated to microbubbles in the KDR-transfected cell assay.
a. Protocol
Microbubbles were conjugated to either a dimer (D23) or one of two different peptide monomers (P6, P12). A fourth conjugation reaction was performed using equal quantities of each monomer and the same total peptide load (e.g. a “mixed monomer”). 293H cells were transfected with KDR cDNA. The transfected cells were incubated with the same number of targeted microbubble and in presence of 50% human serum. At the end of the incubation, the transfected cells were rinsed three times in PBS and examined under a microscope. Binding of the conjugated bubbles was quantified and expressed as percent of surface covered by the targeted microbubbles.
b. Results
As shown in
In this Example, the ability of Lu-labeled D13 to inhibit the growth of PC3 cell tumors implanted in nude mice is demonstrated.
1. Synthesis of 177Lu-Labeled D13
177Lu-labeled D13 was prepared as described in Example 19.
a. Animal Model
PC3 cells from ATCC, grown as recommended by the supplier, were injected subcutaneously between the shoulder blades of nude mice. When their tumors reached 100-400 mm3, twelve mice were injected i.v. with 500 microcuries of Lu-labeled D13 and their growth monitored for an additional 18 days. Mice were sacrificed if they lost 20% or more of their body weight or their tumors exceeded 2000 mm3. Tumor growth in the treated mice was compared with the average tumor growth in 37 untreated nude mice implanted with PC3 tumors.
b. Results
In 6 of the 12 treated mice in the study, the tumors experienced a significant or complete growth delay (
In this experiment, the ability of a KDR/VEGF complex-binding peptide to selectively bind to the KDR/VEGF complex is demonstrated.
1. Reagent Preparation
The reagents for this assay were prepared as described in Example 5 except where noted.
2. Preparation of Peptide-125I-Streptavidin Complex Solution
Biotinylated peptides P30-XB, P31-XB, P32-XB and biotinylated non-binding control peptide were used to prepare 1.25 μM stock solutions in 50% DMSO. A 33.33 nM stock solution of 125I-streptavidin was purchased from Amersham. A stock solution of 13.33 nM I-125 streptavidin/100 nM VEGF was prepared by mixing 850 ml of I-125 streptavidin with 22 μl of 10 μM VEGF and 1275 μl of M199 media. Another stock solution was prepared in the same manner, but lacking VEGF. To prepare 13.33 nM peptide-125I-streptavidin complex solution±VEGF, 500 μL of the 125I-streptavidin (with & without VEGF) stock solutions (prepared in last step) were mixed with 24 μL of 1.25 μM peptide solution of P30-XB, P31-XB, P32-XB, or control peptide. The mixtures were incubated on a rotator at 4° C. for 60 minutes, followed by addition of 50 μL of soft release avidin-sepharose (50% slurry in ddH20) to remove excess peptides and another incubation for 30 minutes on a rotator at 4° C. Finally, the soft release avidin-sepharose was pelleted by centrifuging at 12,000 rpm for 5 minutes at room temperature, and the resulting supernatants were used for the assays.
3. Binding of Peptide/Neutravidin HRP to KDR-Transfected Cells
In this assay, complexes of control peptide and the test peptides (P30-XB, P31-XB, P32-XB) with 125I-streptavidin in the presence or absence of VEGF (prepared as above) were tested for their ability to bind 293H cells that were transiently-transfected with KDR. The complex of P30-XB with 125I-streptavidin specifically bound to KDR-transfected 293H cells as compared to mock transfected cells in the presence of VEGF (
The following experiment assessed the ability of heterodimers D24 and D26 to block the VEGF-induced migration of HUVECs in culture and demonstrated that the added glycosylation and/or distinct spacer structure used in D26 enhanced its potency.
1. Protocol:
Serum-starved HUVECs were placed, 100,000 cells per well, into the upper chambers of BD fibronectin-coated FluoroBlok 24-well insert plates. Basal medium, with or without VEGF (10 ng/mL) in the presence or absence of D24 or D26, was added to the lower chamber of the wells. After 22 hours, quantitation of cell migration/invasion was achieved by post-labeling cells in the insert plates with a fluorescent dye and measuring the fluorescence of the invading/migrating cells in a fluorescent plate reader. The VEGF-induced migration was calculated for each experimental condition by subtracting the amount of migration that occurred when only basal medium was added to the lower chamber of the wells.
2. Results:
VEGF induced a large increase in endothelial cell migration in the assay, which was potently blocked by both D24 and D26 (
The following experiment assessed the ability of TK-1 (structure provided below), a multimeric construct of the peptide TKPPR (which binds to NP-1, a VEGF receptor which enhances the effects of VEGF mediated by KDR), to enhance the inhibition of the VEGF-induced migration of HUVECs in culture produced by D6.
5CF-Gly-N{[CH2CH2C(═O)-Gly-N(CH2CH2C(═O)-Adoa-Thr-Lys-Pro-Pro-Arg-OH]2}2 where Adoa=3,6-dioxa-8-aminooctanoyl, 5CF=5-carboxyfluoresceinyl
TK-1
Protocol:
Serum-starved HUVECs were placed, 100,000 cells per well, into the upper chambers of BD fibronectin-coated FluoroBlok 24-well insert plates. Basal medium, with or without VEGF (10 ng/mL) in the presence or absence of varying concentrations of D6, or varying concentrations of D6 in combination with a constant 100 nM TK-1 (synthesized as described in WO 01/91805 A2), was added to the lower chamber of the wells. After 22 hours, quantitation of cell migration/invasion was achieved by post-labeling cells in the insert plates with a fluorescent dye and measuring the fluorescence of the invading/migrating cells in a fluorescent plate reader. VEGF-induced migration was calculated for each experimental conditions by subtracting the amount of migration observed in the absence of VEGF.
2. Results:
VEGF induced a large increase in endothelial cell migration in the assay, which was potently blocked by D6 (IC50 about 12.5 nM), but not by 100 nM TK-1 alone (
The following experiment showed that fragments of P13-XB can maintain significant KDR binding activity.
1. Protocol
293H cells were transfected with the KDR cDNA or mock-transfected by standard techniques described in Example 6. Streptavidin-HRP complexes containing P12-XB were prepared as in Example 6. Binding of the streptavidin-HRP complexes to the cells was carried out as in Example 6 with a complex concentration of 5.5 nM in the presence of 0 to 250 nM or 0 to 1000 nM of the following competing peptides: P13-XB, F1, F2, and F3. After determining the specific binding under each experimental condition, the IC50 for each peptide was determined (where possible).
2. Results
As shown in Table 9, F1, composed of just the Asp-Trp-Tyr-Tyr binding motif that is also shared with P12-XB along with the non-targeted Gly-Gly-Gly-Lys sequence that was added to most monomeric peptides synthesized based on phage display data, was the smallest fragment able to block P12-XB streptavidin-HRP complex-binding with an IC50 below one micromolar. Surprisingly, a larger fragment derived from P13-XB, F2, failed to significantly inhibit complex-binding at one micromolar. However, when a solubilising motif, (Gly-Arg-Gly)3 was added to the latter peptide to make F3, it was able to compete with the complex for binding with an IC50 of 175 nM, confirming that certain fragments of P13-XB containing the Asp-Trp-Tyr-Tyr motif retain KDR-binding activity. These fragments (pr other fragments of the binding polypeptides disclosed herein), which retain the ability to bind the target, may be utilized instead of the full-length peptide in heteromultimers of the invention.
NH2
The following experiment provides further evidence that heterodimeric constructs are superior to homodimers in their ability to block the biological effects of a peptide growth factor or cytokine.
1. Protocol
Serum-starved HUVECs were placed, 100,000 cells per well, into the upper chambers of BD fibronectin-coated FluoroBlok 24-well insert plates. Basal medium, containing either nothing or VEGF in the presence or absence of increasing concentrations of homodimeric D8 or heterodimeric D17, was added to the lower chamber of the wells. After 22 hours, quantitation of cell migration/invasion was achieved by post-labeling cells in the insert plates with a fluorescent dye and measuring the fluorescence of the invading/migrating cells in a fluorescent plate reader.
2. Results
VEGF induced a large increase in endothelial cell migration in the assay, which was potently blocked by D17 but not D8 (
Disulfide bond substitution analogs of P12-G (P12 with non-target GGGK sequence) where the Cys residues at position 6 and 13 are replaced by a pair of amino acids, one with a carboxy-bearing side-chain (either Glu or Asp) and the other with an amino-bearing side chain [(Lys or Dpr (2,3-diaminopropanoic acid)] were prepared. The cycle, encompassing the same sequence positions as those included in P12-G (made by formation of the disulfide bond) was made by condensation of the side-chain amino and side-chain acid moieties, resulting in a lactam ring that bridges the residues 6-13, as does the disulfide bond of P12-G.
1. Representative Synthesis of Cyclic Lactam-Peptides—P33-L
2. Synthesis of Resin bound peptide 1
Synthesis of 1 was carried out using Method 5 on a 0.25 mmol scale. The peptide resin 1 was washed and dried for further derivatization manually.
3. Synthesis of 4 P33-L
To 1 (240 mg, 0.06 mmol) was added NMM (N-methyl morpholine)/HOAc/DMF 1/2/10 (v/v/v) (65 mL). Palladium tris-triphenylphosphine [Pd(PPh3)4, 554.4 mg, 0.48 mmol] was added-and the resin was shaken for 20 h shielded from light. The resin was filtered and washed with a solution of sodium diethyldithiocarbamate (0.5 g)/DIEA (0.5 ml)/DMF (100 mL), and finally with DMF (3×70 mL). This treatment served to expose only the carboxy and amino groups of Glu6 and Lys13 which are required for the lactam forming reaction. The on-resin cyclization of 2 was carried out using HATU (114 mg, 0.3 mmol), NMM (66 μL, 0.6 mmol) and DMF (10 mL) for 3 h. The completion of the cyclization was monitored by Kaiser test. The peptide was cleaved from the peptide resin 3 using Reagent B for 4 h. The resin was filtered and the filtrate was evaporated to a paste. The crude peptide was precipitated in ether and washed twice with ether. The cyclic peptide was purified by preparative reverse phase linear gradient HPLC using a Waters-YMC C-18 column (250 mm×30 mm i.d.) with CH3CN into H2O (both with 0.1% TFA) as the eluent. Lyophilization of the product-containing fractions afforded 8 mg of (P33-L). P34-L, P35-L, P36-L and P37-L were prepared similarly.
4. Replacement of the disulfide bridge of P12-G while retaining KDR-binding activity
The following experiment demonstrated that the lactam P34-L, which replaced the chemically reactive disulfide bridge of P12-G, maintained significant KDR-binding activity.
5. Protocol
293H cells were transfected with the KDR cDNA or mock-transfected by standard techniques described in Example 6. Streptavidin-HRP complexes containing P12-XB were prepared as in Example 6. Binding of the streptavidin-HRP complexes to the cells was carried out as in Example 6 with a complex concentration of 5.5 nM in the presence of 0 to 250 nM P12-G, or P34-L. After determining the specific binding under each experimental condition, the IC50 for each peptide was determined.
6. Results
As shown in Table 11, P34-L, containing a lactam disulfide bridge replacement, was still able to compete with P12-XB-streptavidin-HRP complexes for binding to KDR, although some affinity was lost (IC50 108 nM versus 13 nM for P12-G). These lactam peptides (or similarly prepared lactam analogs of binding polypeptides disclosed herein) may be utilized instead of the disulfide bridge-containing peptides in heteromultimers of the invention.
Using a BIAcore instrument, the binding constant was determined for the dimer D28 binding to immobilized cMet-Fc.
Procedure
Three densities of cMet-Fc (R&D Systems) were cross-linked to the dextran surface of a CM5 sensor chip by the standard amine coupling procedure (3 μM solution diluted 1:100, 1:50, or 1:20 with 50 mM acetate, pH 5.5). Flow cell 1 was activated and then blocked to serve as a reference subtraction.
Final Immobilization Levels Achieved:
Experiments were performed in PBST buffer (5.5 mM phosphate, pH 7.65, 0.15 M NaCl)+0.05% (v/v) Tween-20). Peptide dimers were dissolved in deionized H2O to 1 mg/mL solutions. Dimers were diluted to 50 nM in PBS. Serial dilutions were performed to produce 25, 12.5, 6.25, and 3.125 nM solutions. All samples were injected in duplicate. For association, dimers were injected at 30 μL/minute for 3 minutes using the kinject program. Following a 10-minute dissociation, any remaining peptide was stripped from the cMet surface with two quickinjects of 4M MgCl2 for 2 minutes at 50 μL/minute. Sensorgrams were analyzed using BIAevaluation software 3.1.
Kd value of 0.79 nM was obtained for D28 (heterodimer of P26-A and P27-X), which was significantly better than Kd value of either heterodimer alone (see SEQ ID NO:369 (880 nM) and SEQ ID NO:370 (220 nM)), as shown in the Table 8 of U.S. Ser. No. 60/451,588, entitled “Peptides that specifically bind HGF receptor (cMet) and uses thereof, ” filed on Sep. 11, 2003 and incorporated by reference herein in its entirety.
Microvascular endothelial cells (MVECs, Cascade Biologics, Portland, Oreg.) were used to assess the in vitro efficacy of D6 and related analogues for their ability to inhibit VEGF-stimulated proliferation. MVECs-(passage 2) were grown to 90% confluency, trypsinized and plated in gelatin-coated 96-well microtiter plates at a density of 4-8×103 cells/well. Sixteen to 24 hours after plating, the cells were washed one time (200 μL/well) with media devoid of fetal bovine serum but containing 0.1% bovine serum albumin (BSA). Fresh BSA-containing media was added to each well and the cells were incubated for an additional 24 hours. After this 24 hour period of starvation, fresh BSA-containing media with or without D6 or other test substances was added, and the cells were incubated for an additional 48 hours at 37° C. The media was removed and fresh BSA-containing media was added with or without BrdU, and the cells were incubated for an additional 24 hours prior to determining the level of incorporation exactly as described by the manufacturer (Oncogene Cat# QIA58). Results are shown in
In this Example, the ability of heterodimer D25 to inhibit the enhanced vascular permeability caused by VEGF injected into the peritoneum of nude mice is demonstrated.
1. Protocol
Male balb/c nu/nu mice were injected i.p. with 2 mL vehicle (1% bovine serum albumin in 95% saline/5% DMSO), vehicle+1.2 nM VEGF165, or vehicle+1.2 nM VEGF165+20 μM D25. Immediately after, the mice were injected with Evan's Blue Dye (0.5% in saline, 4 mL/kg) i.v. via their tail veins. After 60 min mice were sacrificed by CO2 asphyxiation and the peritoneal fluid was retrieved. After centrifuging the samples briefly, the absorbance at 590 mn was measured for each.
2. Results
As shown in
Conditions are described providing methods for determining efficacy of three (3) concentrations for a test compound (dimer D6) suspected of having anti-angiogenic activity on SW-480 human colon carcinoma cells using an in vivo xenograft tumor model.
Athymic nude mice are acceptable hosts for the growth of allogenic and heterogenic cells. Nude mice are required in Points to Consider in the Characterization of Cell Lines used to Produce Biologicals (FDA 1993).
D6 is a synthetic heterodimeric peptide suspected of having anti-angiogenic activity. This peptide binds to the human VEGF receptor 2 (KDR) with high affinity and competes with VEGF binding. The following experiments confirm its anti-angiogenic activity.
1. SW-480 Human Carcinoma Cells
Colon carcinoma, SW-480, cells (ATCC) were cultured in Dulbecco's Modified Eagles Medium (DMEM) supplemented with 4 mM L-glutamine, 0.1 mM non-essential amino acids, 50 mg/mL Gentamicin, 250 mg/mL Fungizone and 10% heat inactivated fetal bovine serum at 37° C. in 95% air and 5% CO2.
Exponentially growing cells were harvested, and washed twice in phosphate buffered saline (PBS) to remove any traces of trypsin or serum. Cells were suspended in Hanks Balanced Salt Solution (HBSS) for injections.
Sterile phosphate buffered saline (BioWhittaker) was manufactured in accordance with cGMP regulations and was cell culture tested to assure compatibility; having a pH of 7.3-7.7 and an osmolarity of 271-287 mOsm/kg. PBS was the vehicle used to reconstitute Test Articles and for vehicle control injections.
Cisplatin (American Pharmaceutical Partners, Inc.; Los Angeles, Calif.) was prepared according to the manufacturer's specifications. Cisplatin was prepared in an aseptic fashion using a BL2 BioChem guard hood.
2. Test System
3. Method of Identification
Mice were uniquely numbered using an ear tag system. Additionally, cages were marked with cage cards minimally identifying group number, animal number, study number and IACUC protocol number.
4. Randomization
Animals were randomly assigned to treatment groups using the Microsoft® Excel 97 SR-1 program.
5. Animal Care
Mice were fed gamma-irradiated rodent chow ad libitum. Tap water was sterilized and supplied via bottle and sipper tube ad libitum.
6. Animal Environment
Animals were housed by groups in semi-rigid isolators. Mice were housed in flat bottom caging. Each cage contained five to ten animals and gamma-irradiated contact bedding. The number of mice in each cage may have been altered due to the behavior of the mice; changes were noted in the isolator inventory. The housing conformed to the recommendations set forth in the Guide for the Care and Use of Laboratory Animals, National Academy Press, Washington, D.C., 1996 and all subsequent revisions.
Environmental controls were set to maintain a temperature of 16-26° C. (70±8° F.) with a relative humidity of 30-70. A 1,2:12 hour light: dark cycle was maintained.
7. Acclimation
Once animals were received, they were allowed to acclimate to the laboratory environment for 24 hours prior to the study start. Mice were observed for signs of disease, unusual food and/or water consumption or other general signs of poor condition. At the time of animal receipt, animals were clinically observed and appeared to be healthy.
8. Experimental Design
Female athymic nude mice (Crl: NU/NU-nuBR) at 6-8 weeks of age were used in this study. A total of 115 mice were injected subcutaneously into the right lateral thorax with 5×106 SW-480, human colon carcinoma cells. When tumors reached a target window size of approximately 150±75 mg, 90 tumor-bearing mice were randomly selected and distributed into one of nine groups. Test compound and vehicle were administered intraperitoneally (IP), Cisplatin was administered intravenously (IV). Tumor measurements were recorded twice weekly using hand-held calipers. Mice were monitored daily for signs of toxicity and morbidity. At study termination, animals were euthanized by carbon dioxide overdose and necropsied for tissue collection.
A total of nine (9) groups were used in this study. Each group contained ten (10) tumor-bearing mice. Groups 1 and 2 contained untreated and vehicle treated negative control mice, respectively. Groups 3, 4, and 5 contained mice that received one of three different concentrations of the D6 heterodimer. Groups 6, 7, and 8 contained mice that received one of three different concentrations of a different anti-angiogenic peptide. Group 9 contained mice that received cisplatin, a standard chemotherapeutic compound, as a positive control.
Dose levels for each group are provided in Table 12. Dosing began the same day that the animals were randomly sorted into groups (Study Day 7). Each dose was removed from the dose vial using aseptic technique for each animal, and the injection site was wiped with an alcohol swab prior to dose administration. Doses were administered with a 1.0 mL syringe and a 27-gauge×½″ needle for each mouse.
The Test compound- and vehicle-treated mice received daily intraperitoneal (IP) injections for 15 days. Cisplatin was administered every other workday for a total of five (5) doses via an intravenous route.
Clinical observations of each animal were performed and recorded at least once daily for toxicity, morbidity and mortality. Morbidity included signs of illness such as, but not limited to, emaciation, dehydration, lethargy, hunched posture, unkempt appearance, dyspnea, and urine or fecal staining.
9. Tumor Measurements
In accordance with the protocol, tumor measurements were taken twice weekly throughout the study by measuring the length and width of tumors with calibrated calipers. Measurements were obtained a minimum of 3-4 days apart, except when animals were euthanized and measurements were taken; this sometimes resulted in an interval of less than 3 days. Tumor weights were calculated using the following formula: mg=(L×W2)/2. Animals were euthanized either when mean tumor weight was ≧1000 mg per group over two (2) consecutive measurements, or if tumors became ulcerated, or impaired the animal's ability to ambulate or obtain food and water.
10. Unscheduled Euthanasia and Unexpected Deaths:
11. Necropsy
a. Euthanasia and Necropsy Order
All mice in groups 1, 2, 3, 4, and 5 (50 total) were submitted for necropsy when tumors reached a group mean target size of ≧1000 mg over two (2) consecutive measurements within a group. Animals were submitted for necropsy to the Charles River Laboratories Health Monitoring Laboratory (HM), Wilmington, Mass. All animals were euthanized on Study Day 22, short of received the full 28 day treatment regiment with Test Articles because mean tumor size was ≧1000 mg in Test Article Treated Groups 3-8. All animals were humanely euthanized by carbon dioxide (CO2) inhalation.
12. Tissue Collection
Tumors were dissected free of surrounding tissue and overlying skin. Additionally the kidneys were collected. Any abnormalities noted on the renal surfaces were noted.
Frozen blocks were made of tumors and kidneys for each animal. A representative section of the tissue (tumor, kidneys) was taken. Kidney sections included the cortex and medulla. Tissue sections were placed in the bottom of a labeled plastic-freezing mold. Tissue was embedded with OCT medium. Blocks were submerged into isopentane chilled with dry ice until frozen. Blocks were briefly examined for quality, and stored on dry ice.
Blocks were labeled with the animal number and a letter code corresponding to tissue (A=left kidney; B=right kidney; C=mass). Blocks from one animal were placed into a labeled bag.
13. Results
a. In-Life Measurements and Observations:
Clinical Observations, Morbidity and Mortality Summary Statement:
All animals appeared healthy and were within normal limits throughout the study, and the Test Compound (D6) did not show any signs of toxicity at the doses used in this study.
Animals were euthanized on Study Day 22. All mice, except Group 9 mice, were euthanized prior to completing Test compound administration, because mean tumor size was >1000 mg in Groups 1-8. Group 9, the Cisplatin-treated animals, were euthanized on Study Day 22 when mean tumor weight was 995 mg. No animals died while on study.
14. Mass Palpation Summary
Throughout the study palpable masses were detected in all mice, with tumors progressively growing for the duration of the study. As expected, tumors in the untreated and vehicle treated negative control mice (Groups 1 and 2) grew the fastest, reaching a mean tumor size of 1000 mg on or before Study Day 20. In addition, animals treated with Cisplatin (Group 9) developed tumors that grew the most slowly, reaching a mean tumor size of 995 mg at study termination (Day 22).
In general, except for the Group 3 mice, all animals treated with Test compounds showed slower tumor growth. Animals in Group 3, which were treated with the low dose of D6 (0.05 mg/kg), had tumors that grew at approximately the same rate as the tumors in untreated and vehicle treated animals in Groups 1 and 2. Animals treated with higher doses of D6 (Groups 4 and 5) had tumors that grew more slowly; reaching a mean tumor size of 1000 mg on Study Day 21. When compared to control Groups 1 and 2 mice, the Test compound treatment resulted in a delay of tumor growth of approximately 1 day.
15. Conclusions
Data from this study validate the model used, because tumor-bearing mice in negative control Groups 1 and 2 and positive control Group 9 responded as expected.
Throughout the study, palpable masses were observed in all groups. In addition, all animals were healthy and within normal limits throughout the study. Furthermore, the Test compound (D6) did not appear to adversely affect the animals. Therefore, these data would suggest that animals treated with D6 had tumors that grew slowly (approximately 1 day slower over the 22 day test period than controls). Also, since the Test compound did not show any significant toxic effects, higher concentrations of Test compound could also be used with potentially better tumor regression.
The following example describes the preparation of an ultrasound contrast agent conjugated to a KDR-binding heterodimer of the invention, and the ability of the heterodimer conjugated contrast agent to localize to KDR-expressing cells in vitro and angiogenic tissue in vivo.
1. Preparation of Derivatized Microbubbles for Peptide Conjugation.
200 mg of DSPC (distearoylphosphatidylcholine), 275 mg of DPPG-Na (distearoylphosphatidylglycerol sodium salt) and 25 mg of N-MPB-PE were solubilized at 60° C. in 50 ml of Hexan/isopropanol (42/8). The solvent was evaporated under vacuum, and then PEG-4000 (35.046 g) was added to the lipids and the mixture was solubilized in 106.92 g of t-butyl alcohol at 60° C., in a water bath. The solution was filled in vials with 1.5 mL of solution. The samples were rapidly frozen at −45° C. and lyophilized. The air in the headspace was replaced with a mixture of C4F10/Air (50/50) and vials capped and crimped. The lyophilized samples were reconstituted with 10 ml saline solution (0.9% NaCl) per vial, yielding a suspension of phospholipids stabilized microbubbles.
2. Peptide Conjugation
D23 (a dimeric construct of P6- and P12-derived sequences) was conjugated with a preparation of microbubbles as above described, according to the following methodology. The thioacetylated peptide (200 μg) was dissolved in 20 μl DMSO and then diluted in 1 ml of phosphate buffered saline (PBS). This solution was added to the N-MPB-functionalized microbubbles dispersed in 18 mL of PBS-EDTA 10 mM, pH 7.5 and 2 mL of deacetylation solution (50 mM sodium phosphate, 25 mM EDTA, 0.5 M hydroxylamine. HCl, pH 7.5) was added. The headspace was filled with C4F10/Air (50/50) and the mixture was incubated for 2.5 hours at room temperature under gentle agitation (rotating wheel), in the dark. Conjugated bubbles were washed by centrifugation. Similarly, the monomer peptides making up D23 were separately conjugated to two different microbubble preparations according to the methodology described above.
3. In Vitro Assay on Transfected Cells
The ability of phospholipid stabilized microbubbles conjugated to heteromultimeric constructs of the invention to bind to KDR-expressing cells was assessed using 293H cells transfected to expresss KDR.
4. Transfection of 293H Cells on Thermanox® Coverslips
293H cells were transfected with KDR DNA as set forth in Example 6. The transfected cells were incubated with a suspension of peptide-conjugated microbubbles prepared as described above. For the incubation with the transfected cells a small plastic cap is filled with a suspension containing 1 to 3×108 peptide-conjugated microbubbles and the cap covered with an inverted Thermanox® coverslip is placed so that the transfected cells are in contact with the conjugated microbubbles. After about 20 min at RT, the coverslip is lifted with tweezers, rinsed three times in PBS and examined under a microscope to assess binding of the conjugated microbubbles.
5. Determination of the % of Surface Covered by Microvesicles
Images were acquired with a digital camera DC300F (Leica), and the percent of surface covered by bound microbubbles in the imaged area was determined using the software QWin (Leica Microsystem AG, Basel, Switzerland). Table 13 shows the results of the binding affinity (expressed as coverage % of the imaged surface) of targeted microvesicles of the invention to KDR transfected cells, as compared to the binding of the same targeted microvesicles to Mock-transfected cells.
When the P-6 derived sequence and the P12-derived sequence are separately attached to phospholipid-stabilized microbubbles as monomers, the resulting preparations achieve binding of the bubbles to KDR-transfected cells in vitro to a different extent (3.5% & 16.8%). When a preparation of phospholipid-stabilized microbubbles resulting from the addition of equal quantities of each of these peptide monomers (but the same total peptide load) is tested in the same system, 12.9% binding is achieved. Binding is a little more than the average of the two, but as it is achieved with two sequences that bind to different sites on the target it will be more resistant to competition at one or other of the sites on the target. However, for D23, the dimer, binding is increased to 22.9% (with the same peptide load). These results indicate that hetromultimers of the invention permit increased binding and increased resistance to competition.
6. In Vivo Animal Models
A known model of angiogenic tissue (the rat Mat B III model) was used to examine the ability of phospholipid stabilized microbubbles conjugated to a heteromultimer of the invention to localize to and provide images of angiogenic tissue.
7. Animals
Female Fisher 344 rats (Charles River Laboratories, France) weighing 120 to 160 g were used for the MATBIII tumor implantation. Male OFA rats (Charles River Laboratories, France) weighing 100 g to 150 g were used for Matrigel injection.
8. Anesthesia
Rats were anesthetized with an intramuscular injection (1 ml/kg) of Ketaminol®/xylazine (Veterinaria AG/Sigma) (50/10 mg/ml) mixture before implantation of Matrigel or MatBIII cells. For imaging experiments, animals were anesthetized with the same mixture, plus subcutaneous injection of 50% urethane (1 g/kg).
9. Rat MATBIII Tumor Model
A rat mammary adenocarcinoma, designated 13762 Mat B III, was obtained from ATCC (CRL-1666) and grown in McCoy's 5a medium+10% FCS. 1% glutamine and 1% pen/strep (Invitrogen cat# 15290-018). Cells in suspension were collected and washed in growth medium, counted, centrifuged and resuspended in PBS or growth medium at 1×10 cells per mL. For tumor induction: 1×106 cells in 0.1 mL were injected into the mammary fat pad of anesthetized female Fisher 344 rat. Tumors usually grow to a diameter of 5-8 mm within 8 days.
10. In vivo Ultrasound Imaging
Tumor imaging was performed using an ultrasound imaging system, the ATL HDI 5000 apparatus equipped with a L7-4 linear probe. B-mode pulse inversion at low acoustic power (MI=0.05) was used to follow accumulation of peptide conjugated-microbubbles on the KDR receptor expressed on the endothelium of neovessels. For the control experiments, an intravenous bolus of unconjugated microbubbles or microbubbles conjugated to non-specific peptide was injected. The linear probe was fixed on the skin directly on line with the implanted tumors and accumulation of targeted bubbles was followed during thirty minutes.
A perfusion of SonoVue® was administered before injecting the test bubble suspension. This allows the evaluation of the vascularization status and the video intensity obtained after SonoVue® injection is taken as an internal reference.
A baseline frame was recorded and then insonation was stopped during the injection of the microbubbles. At various time points after injection (1, 2, 5, 10, 15, 20, 25, 30 minutes), insonation was reactivated and 2 frames of one second were recorded on a videotape.
Video frames from tumor imaging experiments were captured and analysed with the video-capture and Image-Pro Plus 2.0 software respectively. The same rectangular Area of Interest (AOI), including the whole sectional area of the tumor, was selected on images at different time points (1, 2, 5, 10, 15, 20, 25, 30 minutes). At each time point, the sum of the video pixel inside the AOI was calculated after the subtraction of the AOI baseline. Results are expressed as the percentage of the signal obtained with SonoVues®, which is taken as 100%. Similarly, a second AOI situated outside the tumor, and representing the freely circulating contrast agent, is also analyzed.
Although the present invention has been described with reference to preferred embodiments, one skilled in the art can easily ascertain its essential characteristics and without departing from the spirit and scope thereof, can make various changes and modifications of the invention to adapt it to various usages and conditions. Those skilled in the art will recognize or be able to ascertain using no more than routine experimentation, many equivalents to the specific embodiments of the invention described herein. Such equivalents are encompassed in the scope of the present invention.
All publications and patents mentioned in this specification are herein incorporated by reference.
This application is a continuation in part of U.S. application Ser. No. 10/661,032, filed Sep. 11, 2003 now U.S. Pat. No. 7,261,876, which is a continuation in part of U.S. application Ser. No. 10/379,287, filed Mar. 3, 2003 now U.S. Pat. No. 7,211,240, which claims benefit of U.S. Provisional Application Ser. No. 60/440,201 filed Jan. 15, 2003 and U.S. Provisional Application Ser. No. 60/360,821, filed Mar. 1, 2002. All of these applications are incorporated by reference herein in their entirety.
| Number | Name | Date | Kind |
|---|---|---|---|
| 2913451 | De La Mater et al. | Nov 1959 | A |
| 5547656 | Unger | Aug 1996 | A |
| 5670133 | Zamora | Sep 1997 | A |
| 5759515 | Rhodes et al. | Jun 1998 | A |
| 5766860 | Terman et al. | Jun 1998 | A |
| 5769080 | Unger et al. | Jun 1998 | A |
| 5773024 | Unger et al. | Jun 1998 | A |
| 5855866 | Thorpe et al. | Jan 1999 | A |
| 5861301 | Terman et al. | Jan 1999 | A |
| 5935820 | Hu et al. | Aug 1999 | A |
| 6033645 | Unger et al. | Mar 2000 | A |
| 6051230 | Thorpe et al. | Apr 2000 | A |
| 6071495 | Unger et al. | Jun 2000 | A |
| 6130071 | Alitalo et al. | Oct 2000 | A |
| 6146657 | Unger et al. | Nov 2000 | A |
| 6204011 | Kendall et al. | Mar 2001 | B1 |
| 6221839 | Alitalo et al. | Apr 2001 | B1 |
| 6231834 | Unger et al. | May 2001 | B1 |
| 6245318 | Klibanov et al. | Jun 2001 | B1 |
| 6245530 | Alitalo et al. | Jun 2001 | B1 |
| 6261535 | Thorpe et al. | Jul 2001 | B1 |
| 6261537 | Klaveness et al. | Jul 2001 | B1 |
| 6264917 | Klaveness et al. | Jul 2001 | B1 |
| 6322770 | Rajopadhye et al. | Nov 2001 | B1 |
| 6331289 | Klaveness et al. | Dec 2001 | B1 |
| 6359115 | Kendall et al. | Mar 2002 | B1 |
| 6361946 | Alitalo et al. | Mar 2002 | B1 |
| 6403088 | Alitalo et al. | Jun 2002 | B1 |
| 6451764 | Lee et al. | Sep 2002 | B1 |
| 6521211 | Unger et al. | Feb 2003 | B1 |
| 6524553 | Harris | Feb 2003 | B1 |
| 6528039 | Unger | Mar 2003 | B2 |
| 6537520 | Rajopadhye et al. | Mar 2003 | B1 |
| 6548048 | Cuthbertson et al. | Apr 2003 | B1 |
| 6548663 | Cheesman et al. | Apr 2003 | B1 |
| 6576608 | Lee et al. | Jun 2003 | B1 |
| 6610269 | Klaveness et al. | Aug 2003 | B1 |
| 6645933 | Alitalo et al. | Nov 2003 | B1 |
| 6680047 | Klaveness et al. | Jan 2004 | B2 |
| 6689352 | Achen et al. | Feb 2004 | B2 |
| 6730658 | Alitalo et al. | May 2004 | B1 |
| 6733755 | Tchisitiakova et al. | May 2004 | B2 |
| 6773696 | Unger | Aug 2004 | B2 |
| 6777534 | Klagsbrun et al. | Aug 2004 | B1 |
| 6800273 | Rajopadhye et al. | Oct 2004 | B2 |
| 6841367 | Kendall et al. | Jan 2005 | B2 |
| 6841382 | Kendall et al. | Jan 2005 | B2 |
| 6875741 | Pillutla et al. | Apr 2005 | B2 |
| 7034105 | Alitalo et al. | Apr 2006 | B2 |
| 20010031485 | Backer et al. | Oct 2001 | A1 |
| 20010038842 | Achen et al. | Nov 2001 | A1 |
| 20020001566 | Rajopadhye et al. | Jan 2002 | A1 |
| 20020010137 | Ashkenazi et al. | Jan 2002 | A1 |
| 20020015680 | Harris | Feb 2002 | A1 |
| 20020037289 | Thorpe et al. | Mar 2002 | A1 |
| 20020058619 | Tchisitiakova et al. | May 2002 | A1 |
| 20020065218 | Achen et al. | May 2002 | A1 |
| 20020068697 | Tournaire | Jun 2002 | A1 |
| 20020086013 | King | Jul 2002 | A1 |
| 20020091082 | Aiello | Jul 2002 | A1 |
| 20020098187 | Ferrara et al. | Jul 2002 | A1 |
| 20020102215 | Klaveness et al. | Aug 2002 | A1 |
| 20020102217 | Klaveness et al. | Aug 2002 | A1 |
| 20020102260 | Achen et al. | Aug 2002 | A1 |
| 20020164667 | Alitalo et al. | Nov 2002 | A1 |
| 20030023046 | Ferrara et al. | Jan 2003 | A1 |
| 20030055006 | Siemeister et al. | Mar 2003 | A1 |
| 20030082103 | Wartchow et al. | May 2003 | A1 |
| 20030091567 | Alitalo et al. | May 2003 | A1 |
| 20030124120 | Harris et al. | Jul 2003 | A1 |
| 20030149262 | Cheesman et al. | Aug 2003 | A1 |
| 20030157025 | Unger et al. | Aug 2003 | A1 |
| 20030166523 | Achen et al. | Sep 2003 | A1 |
| 20030166873 | Lee et al. | Sep 2003 | A1 |
| 20030176674 | Rosen et al. | Sep 2003 | A1 |
| 20030180305 | Rajopadhye et al. | Sep 2003 | A1 |
| 20030180718 | Pillutla et al. | Sep 2003 | A1 |
| 20030195147 | Pillutla et al. | Oct 2003 | A1 |
| 20030236190 | Pillutla et al. | Dec 2003 | A1 |
| 20040009122 | Klaveness et al. | Jan 2004 | A1 |
| 20040023887 | Pillutla et al. | Feb 2004 | A1 |
| 20040033949 | Bunting | Feb 2004 | A1 |
| 20040037820 | Alitalo et al. | Feb 2004 | A1 |
| 20040141922 | Klaveness et al. | Jul 2004 | A1 |
| 20040147448 | Alitalo et al. | Jul 2004 | A1 |
| 20040147449 | Siemeister et al. | Jul 2004 | A1 |
| 20040147726 | Alitalo et al. | Jul 2004 | A1 |
| 20040213790 | Lee et al. | Oct 2004 | A1 |
| 20040223911 | Bednarski et al. | Nov 2004 | A1 |
| 20040224398 | Anand-Apte | Nov 2004 | A1 |
| 20040248781 | Kerbel | Dec 2004 | A1 |
| 20040266694 | Tchisitiakova et al. | Dec 2004 | A1 |
| 20050002865 | Klaveness et al. | Jan 2005 | A1 |
| 20050037967 | Rosenblum | Feb 2005 | A1 |
| 20060003926 | Rajopadhye et al. | Jan 2006 | A1 |
| 20060063699 | Larsen | Mar 2006 | A1 |
| 20060089307 | Kulseth | Apr 2006 | A1 |
| Number | Date | Country |
|---|---|---|
| 0580726 | Feb 1994 | EP |
| 0627940 | Dec 1994 | EP |
| 0666868 | Aug 1995 | EP |
| 0711127 | May 1996 | EP |
| 0804932 | Nov 1997 | EP |
| 0831932 | Apr 1998 | EP |
| 0842273 | May 1998 | EP |
| 0848755 | Jun 1998 | EP |
| 0977600 | Feb 2000 | EP |
| 1007101 | Jun 2000 | EP |
| 1081913 | Mar 2001 | EP |
| 1166798 | Jan 2002 | EP |
| 1166799 | Jan 2002 | EP |
| 1238986 | Sep 2002 | EP |
| 1306095 | May 2003 | EP |
| 1444991 | Aug 2004 | EP |
| 1259248 | Dec 2004 | EP |
| 1519193 | Mar 2005 | EP |
| 1574518 | Sep 2005 | EP |
| 1586333 | Oct 2005 | EP |
| WO 9214748 | Sep 1992 | WO |
| WO 9410202 | May 1994 | WO |
| WO 9640285 | Dec 1996 | WO |
| 9705250 | Feb 1997 | WO |
| WO 9709427 | Mar 1997 | WO |
| WO 9717422 | May 1997 | WO |
| 9818495 | May 1998 | WO |
| 9818500 | May 1998 | WO |
| WO 9818498 | May 1998 | WO |
| WO 9818501 | May 1998 | WO |
| 9833917 | Aug 1998 | WO |
| WO 9847541 | Oct 1998 | WO |
| 9858053 | Dec 1998 | WO |
| WO 9929861 | Jun 1999 | WO |
| WO 9940947 | Aug 1999 | WO |
| 9955383 | Nov 1999 | WO |
| WO 9958162 | Nov 1999 | WO |
| 9964052 | Dec 1999 | WO |
| WO 0027414 | May 2000 | WO |
| WO 0045856 | Aug 2000 | WO |
| 0063380 | Oct 2000 | WO |
| WO 0142284 | Jun 2001 | WO |
| 0152875 | Jul 2001 | WO |
| 0157067 | Aug 2001 | WO |
| WO 0154723 | Aug 2001 | WO |
| WO 0162942 | Aug 2001 | WO |
| WO 0164235 | Sep 2001 | WO |
| WO 0170268 | Sep 2001 | WO |
| WO 0170681 | Sep 2001 | WO |
| WO 0170945 | Sep 2001 | WO |
| WO 0182870 | Nov 2001 | WO |
| WO 0183693 | Nov 2001 | WO |
| WO 0197850 | Dec 2001 | WO |
| WO 0206789 | Jan 2002 | WO |
| WO 0207747 | Jan 2002 | WO |
| WO 0228895 | Apr 2002 | WO |
| WO 02057299 | Jul 2002 | WO |
| WO 02060950 | Aug 2002 | WO |
| 02072011 | Sep 2002 | WO |
| WO 02083849 | Oct 2002 | WO |
| 02096367 | Dec 2002 | WO |
| WO 03080653 | Feb 2003 | WO |
| 03027246 | Apr 2003 | WO |
| WO 03028643 | Apr 2003 | WO |
| 03035839 | May 2003 | WO |
| 2004033949 | May 2003 | WO |
| WO 03018797 | Jun 2003 | WO |
| 03070747 | Aug 2003 | WO |
| 03074005 | Sep 2003 | WO |
| 03084574 | Oct 2003 | WO |
| WO 03094617 | Nov 2003 | WO |
| 03103581 | Dec 2003 | WO |
| 2004058802 | Jul 2004 | WO |
| 2004058803 | Jul 2004 | WO |
| 2004064595 | Aug 2004 | WO |
| 2004065621 | Aug 2004 | WO |
| 2004085617 | Oct 2004 | WO |
| 2005011722 | Feb 2005 | WO |
| 2005016963 | Feb 2005 | WO |
| 2005070472 | Aug 2005 | WO |
| 2005072417 | Aug 2005 | WO |
| 2006015385 | Feb 2006 | WO |
| Number | Date | Country | |
|---|---|---|---|
| 20050147555 A1 | Jul 2005 | US |
| Number | Date | Country | |
|---|---|---|---|
| 60440201 | Jan 2003 | US | |
| 60360821 | Mar 2002 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 10661032 | Sep 2003 | US |
| Child | 10916155 | US | |
| Parent | 10379287 | Mar 2003 | US |
| Child | 10661032 | US |
