Methods of diagnosis of Hepatitis C infection, compositions and methods of screening for modulators of Hepatitis C infection

Information

  • Patent Application
  • 20030228570
  • Publication Number
    20030228570
  • Date Filed
    February 12, 2003
    21 years ago
  • Date Published
    December 11, 2003
    20 years ago
Abstract
Described herein are genes whose expression are up-regulated or down-regulated during the course of Hepatitis C infection, or distinction between treatment response. Related methods and compositions that can be used for diagnosis and treatment of Hepatitis C infection and/or its secondary consequences are disclosed. Also described herein are methods that can be used to identify modulators of Hepatitis C infection and/or its secondary consequences.
Description


FIELD OF THE INVENTION

[0002] The invention relates to the identification of nucleic acid and protein expression profiles and nucleic acids, products, and antibodies thereto that are involved in Hepatitis C infection; and to the use of such expression profiles to identify compositions relevant in the diagnosis, prognosis, and therapy of Hepatitis C infection and its secondary consequences. The invention further relates to methods for identifying and using agents and/or targets that inhibit Hepatitis C infection or the effects therefrom.



BACKGROUND OF THE INVENTION

[0003] Hepatitis C virus (HCV) infects an estimated 170 million persons worldwide and thus, represents a viral pandemic that is five times as widespread as infection with the Human immunodeficiency-1 virus (HIV-1). In the United States alone an estimated 2.7 million Americans have active HCV infections.


[0004] Sexual transmission of the virus is an inefficient means of infection, rather, the factors most strongly associated with infection are injection drug use and before 1990, receipt of blood transfusion. In some cases no risk factors can be identified. Fortunately, introduction in 1990 and 1992 of improved blood screening measures, based on the detection of HCV antibodies, dramatically decreased the risk of transfusion associated HCV infection.


[0005] HCV is a positive strand RNA virus that belongs to the family of Flavivirus. The natural targets of HCV are the hepatocytes and possibly also B lymphocytes. The genome is about 9400 nucleotides in length and encodes a single large polyprotein of about 3000 amino acids which undergoes proteolysis to form the mature viral proteins. Structural components include the core and two envelope proteins. Two of the regions of the envelope E2 protein, designated hypervariable regions 1 and 2 have an extremely high rate of mutation, believed to be the result of selective pressure by virus specific antibodies. Because the virus is highly mutable and evolves over the course of infection, therapies directed solely at targeting an immune response toward the virus can be ineffective in clearing the viral load. See, e.g., Lauer and Walker (2001) “Hepatitis C Virus Infection” N. E. J. Med. 345:41-52.


[0006] In most persons who become infected with HCV, viremia persists indefinitely and is accompanied by variable degrees of hepatic inflammation and fibrosis. HCV infection is rarely diagnosed during the acute phase of infection when the possibility of viral clearance is greatest. Clinical manifestations of HCV infection usually occur between 2-26 weeks after exposure to HCV, but the majority of persons are asymptomatic. The symptoms that do sometimes accompany acute HCV infection are usually mild and, when present, consist of jaundice, malaise, and nausea. In most cases, acute infection leads to chronic infection which is typically characterized by a prolonged period in which there are no symptoms. Once chronic infection has been established, spontaneous clearance of viremia is rare.


[0007] Viral clearance is associated with the development and persistence of strong virus-specific responses by cytotoxic T lymphocytes and helper T cells. The relatively weak response of cytotoxic T lymphocytes in persons with chronic HCV infection while insufficient to contain viremia and genetic evolution of the virus is still sufficient to cause collateral damage through the elaboration of inflammatory cytokines in the liver. The constant low level inflammatory response leads to hepatitis in most cases of chronic infection and also to some degree of fibrosis which may, in turn, be accompanied by relatively non-specific symptoms such as fatigue. Cirrhosis develops in 15-20% of those individuals who are chronically infected with HCV and these individuals are at high risk for developing severe complications, such as hepatic carcinoma. In fact, once cirrhosis is established, the risk of hepatocellular carcinoma is approximately 1-4% per year.


[0008] In addition to hepatic disease, there are important extrahepatic manifestations of HCV infection. Most of these syndromes are associated with autoimmune or lymphoproliferative states and may be related to the possibility that HCV is able to replicate in lymphoid cells. For example, a higher incidence of non-Hodgkin's Lymphoma has been observed in HCV infection.


[0009] Clearly, a need exists for the identification of novel therapeutic targets and diagnostic markers of HCV infection. Early diagnosis improves the chances that an individual will be able to clear the virus before infection becomes chronic. But, since most infections do become chronic, it is worthwhile to pursue alternative therapies which can be directed at alleviating the continuous low level inflammatory response that accompanies HCV infection and other secondary consequences of HCV infection such as liver fibrosis, which in turn, leads ultimately to cirrhosis and hepatocellular carcinoma.


[0010] Advances in molecular medicine will facilitate elucidation of a role for novel proteins and compounds in disease states. Identification of therapeutic targets and diagnostic markers is essential for improving the current treatment of Hepatitis C infected patients. Accordingly, provided herein are molecular targets for therapeutic intervention in all aspects of Hepatitis C infection. Additionally, provided herein are methods that can be used in diagnosis and prognosis of Hepatitis C infection and/or it secondary consequences. Further provided are methods that can be used to screen candidate bioactive agents for the ability to modulate Hepatitis C infection and/or its secondary consequences.


[0011] The current therapeutic regimen for HCV infection is treatment with interferon alpha (IFN-α). See, e.g., Berkow, The Merck Manual. In chronic hepatitis C, interferon-α at a dosage of 3 million IU subcutaneous three times weekly initially suppresses inflammation in about 50% of patients. Responders are usually treated for 12 months, but most relapse when treatment is stopped; successful long-term disease suppression is only about 20 to 25% overall. Response depends in part on the viral load, viral genotype, and histological state of the disease. Combination therapy with interferon plus oral Ribavirin™ (1200 mg daily in 2 divided doses) may give a higher rate of sustained response. In addition to having limited efficacy, interferon is expensive, must be given by injection, produces bothersome flu-like side effects in most patients, and induces more serious side effects in a minority of cases. Treatment should be supervised by a specialist. Other antiviral and immunomodulatory drugs against HCV have been evaluated or are being studied, but none has shown much promise except the combination of interferon plus ribavirin™.


[0012] Thus, means to early diagnose infection, and to identify patients who are likely to respond to treatment with IFN-α would be useful. Prognosis of response to treatment will minimize the occurrence of negative side effects in those patients who will not respond, and will allow early application of alternative therapies early in the infection. The present invention provides these and many other important capabilities.



SUMMARY OF THE INVENTION

[0013] The present invention therefore provides nucleotide sequences of genes that are up- and down-regulated in Hepatitis C infected cells and in cells affected indirectly by Hepatitis C infection. Such genes are useful for diagnostic purposes, and also as targets for screening for therapeutic compounds that modulate Hepatitis C infection and/or its secondary consequences, such as hormones or antibodies. Other aspects of the invention will become apparent to the skilled artisan by the following description of the invention.


[0014] In one aspect, the present invention provides a method of detecting a RNA transcript associated with Hepatitis C infection, in a cell from a patient, the method comprising contacting a biological sample from the patient with a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15.


[0015] In one embodiment, the present invention provides a method of determining the level of a Hepatitis C infection associated transcript in a cell from a patient.


[0016] In one embodiment, the present invention provides a method of detecting a Transcript associated with Hepatitis C infection in a cell from a patient, the method comprising contacting a biological sample from the patient with a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15.


[0017] In one embodiment, the polynucleotide selectively hybridizes to a sequence at least 95% identical to a sequence as shown in Tables 1A-15.


[0018] In one embodiment, the biological sample is a tissue sample, e.g., a liver biopsy. In another embodiment, the biological sample comprises isolated nucleic acids, e.g., mRNA.


[0019] In one embodiment, the polynucleotide is labeled, e.g., with a fluorescent label.


[0020] In one embodiment, the polynucleotide is immobilized on a solid surface.


[0021] In one embodiment, the patient is undergoing a therapeutic regimen to treat Hepatitis C infection.


[0022] In one embodiment, the patient is a primate or human.


[0023] In one embodiment, the Hepatitis C associated transcript is mRNA.


[0024] In one embodiment, the method further comprises the step of amplifying nucleic acids before the step of contacting the biological sample with the polynucleotide.


[0025] In another aspect, the present invention provides a method of monitoring the efficacy of a therapeutic treatment for Hepatitis C infection and/or its secondary consequences, the method comprising steps of: (i) providing a biological sample from a patient undergoing the therapeutic treatment; and (ii) determining the level of a Transcript associated with Hepatitis C infection in the biological sample by contacting the biological sample with a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15, thereby monitoring the efficacy of the therapy. In a further embodiment, the patient has a drug resistant form of Hepatitis C infection.


[0026] In one embodiment, the method further comprises a step of: (iii) comparing the level of the RNA transcript associated with Hepatitis C infection to a level of the Transcript associated with Hepatitis C infection in a biological sample from the patient prior to, or earlier in, the therapeutic treatment.


[0027] Additionally, provided herein is a method of evaluating the effect of a candidate drug for treating Hepatitis C infection and/or its secondary consequences, comprising administering drug to a patient and removing a cell sample from the patient. The expression profile of the cell is then determined. This method may further comprise comparing the expression profile to an expression profile of a healthy individual or other comparison sample. In a preferred embodiment, said expression profile includes a gene of Tables 1A-15.


[0028] In one aspect, the present invention provides an isolated nucleic acid molecule consisting of a polynucleotide sequence as shown in Tables 1A-15.


[0029] In one embodiment, an expression vector or cell comprises the isolated nucleic acid.


[0030] In one aspect, the present invention provides an isolated polypeptide which is encoded by a nucleic acid molecule having polynucleotide sequence as shown in Tables 1A-15.


[0031] In another aspect, the present invention provides an antibody that specifically binds to an isolated polypeptide which is encoded by a nucleic acid molecule having polynucleotide sequence as shown in Tables 1A-15.


[0032] In one embodiment, the antibody is conjugated to an effector component, e.g., a fluorescent label, a radioisotope, or a cytotoxic chemical.


[0033] In one embodiment, the antibody is an antibody fragment. In another embodiment, the antibody is humanized.


[0034] In one aspect, the present invention provides a method of detecting a Hepatitis C infected cell or a cell affected secondarily by Hepatitis C infection in a biological sample from a patient, the method comprising contacting the biological sample with an antibody as described herein.


[0035] In another aspect, the present invention provides a method of detecting antibodies specific to Hepatitis C infection in a patient, the method comprising contacting a biological sample from the patient with a polypeptide encoded by a nucleic acid comprising a sequence from Tables 1A-15.


[0036] In another aspect, the present invention provides a method for identifying a compound that modulates a Hepatitis C infection-associated polypeptide, the method comprising steps of: (i) contacting the compound with a Hepatitis C infection-associated polypeptide, the polypeptide encoded by a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15; and (ii) determining the functional effect of the compound upon the polypeptide.


[0037] In one embodiment, the functional effect is a physical effect, an enzymatic effect, a physiological effect, or a chemical effect.


[0038] In one embodiment, the polypeptide is expressed in a eukaryotic host cell or cell membrane. In another embodiment, the polypeptide is recombinant.


[0039] In one embodiment, the functional effect is determined by measuring ligand binding to the polypeptide.


[0040] In another aspect, the present invention provides a method of inhibiting proliferation of a Hepatitis C infected or a cell secondarily affected by Hepatitis C infection to treat Hepatitis C infection in a patient, the method comprising the step of administering to the subject a therapeutically effective amount of a compound identified as described herein.


[0041] In one embodiment, the compound is an antibody, e.g., one or more monoclonal antibodies.


[0042] In another aspect, the present invention provides a drug screening assay comprising steps of: (i) administering a test compound to a mammal suffering from a Hepatitis C infection or to a cell sample isolated therefrom; (ii) comparing the level of gene expression of a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15 in a treated cell or mammal with the level of gene expression of the polynucleotide in a control cell sample or mammal, wherein a test compound that modulates the level of expression of the polynucleotide is a candidate for the treatment of Hepatitis C infection and/or its secondary consequences.


[0043] In one embodiment, the control is a mammal, e.g., primate, infected with Hepatitis C virus or a cell sample therefrom that has not been treated with the test compound. In another embodiment, the control is a normal cell or mammal.


[0044] In one embodiment, the test compound is administered in varying amounts or concentrations. In another embodiment, the test compound is administered for varying time periods. In another embodiment, the comparison can occur before or after addition or removal of the drug candidate.


[0045] In one embodiment, the levels of a plurality of polynucleotides that selectively hybridize to a sequence at least 80% identical to a sequence as shown in Tables 1A-15 are individually compared to their respective levels in a control cell sample or mammal. In a preferred embodiment the plurality of polynucleotides is from three to ten.


[0046] In another aspect, the present invention provides a method for treating a mammal infected with Hepatitis C virus comprising administering a compound identified by the assay described herein.


[0047] In another aspect, the present invention provides a pharmaceutical composition for treating a mammal, e.g., primate, infected with Hepatitis C virus, the composition comprising a compound identified by the assay described herein and a physiologically acceptable excipient.


[0048] In one aspect, the present invention provides a method of screening drug candidates by providing a cell expressing a gene that is up- or down-regulated as in a Hepatitis C infection. In one embodiment, a gene is selected from Tables 1A-15. The method further includes adding a drug candidate to the cell and determining the effect of the drug candidate on the expression of the expression profile gene.


[0049] In one embodiment, the method of screening drug candidates includes comparing the level of expression in the absence of the drug candidate to the level of expression in the presence of the drug candidate, wherein the concentration of the drug candidate can vary when present, and wherein the comparison can occur after addition or removal of the drug candidate. In a preferred embodiment, the cell expresses at least two or more expression profile genes. The profile genes may each show change, e.g., an increase or decrease.


[0050] Also provided is a method of evaluating the effect of a candidate drug for the treatment of Hepatitis C infection and/or its secondary consequences comprising administering the drug to a transgenic animal expressing or over-expressing the Hepatitis C infection modulatory protein, or an animal lacking the Hepatitis C infection modulatory protein, e.g., as a result of a gene knockout.


[0051] Moreover, provided herein is a biochip comprising one or more nucleic acid segments of Tables 1A-15, wherein the biochip comprises fewer than 1000 nucleic acid probes. Preferably, at least two nucleic acid segments are included. More preferably, at least three nucleic acid segments are included.


[0052] Furthermore, a method of diagnosing a disorder associated with Hepatitis C infection is provided. The method comprises determining the expression of a gene of Tables 1A-15, in a first tissue type of a first individual, and comparing the distribution to the expression of the gene from a second uninfected individual. A difference in the expression indicates that the first individual has a disorder associated with Hepatitis C infection.


[0053] In a further embodiment, the biochip also includes a polynucleotide sequence of a gene that is not changed, e.g., up- or down-regulated in Hepatitis C infection.


[0054] In one embodiment a method for screening for a bioactive agent capable of interfering with the binding of a Hepatitis C infection modulating protein (Hepatitis C infection modulatory protein) or a fragment thereof and an antibody which binds to said Hepatitis C infection modulatory protein or fragment thereof. In a preferred embodiment, the method comprises combining a Hepatitis C infection modulatory protein or fragment thereof, a candidate bioactive agent, and an antibody which binds to said Hepatitis C infection modulatory protein or fragment thereof. The method further includes determining the binding of said Hepatitis C infection modulatory protein or fragment thereof and said antibody. When there is a change in binding, an agent is identified as an interfering agent. The interfering agent can be an agonist or an antagonist. Preferably, the agent inhibits Hepatitis C infection and/or the secondary consequences of Hepatitis C infection.


[0055] Also provided herein are methods of modulating an immune response in an individual, e.g., primate. In one embodiment a method provided herein comprises administering to an individual a composition comprising a Hepatitis C infection modulating protein, or a fragment thereof. In another embodiment, the protein is encoded by a nucleic acid selected from those of Tables 1A-15.


[0056] Further provided herein are compositions capable of eliciting an immune response in an individual. In one embodiment, a composition provided herein comprises a Hepatitis C infection modulating protein, preferably encoded by a nucleic acid of Tables 1A-15, or a fragment thereof, and a pharmaceutically acceptable carrier. In another embodiment, said composition comprises a nucleic acid comprising a sequence encoding a Hepatitis C infection modulating protein, preferably selected from the nucleic acids of Tables 1A-15, and a pharmaceutically acceptable carrier.


[0057] Also provided are methods of neutralizing the effect of a protein associated with Hepatitis C infection and/or its secondary consequences, or a fragment thereof, comprising contacting an agent specific for said protein with said protein in an amount sufficient to effect neutralization. In another embodiment, the protein is encoded by a nucleic acid selected from those of Tables 1A-15.


[0058] In another aspect of the invention, a method of treating an individual infected with Hepatitis C is provided. In one embodiment, the method comprises administering to said individual, e.g., primate, an inhibitor of a Hepatitis C infection modulating protein. In another embodiment, the method comprises administering to a patient, e.g., primate, infected with Hepatitis C virus, an antibody to a Hepatitis C infection modulating protein conjugated to a therapeutic moiety. Such a therapeutic moiety can be a cytotoxic agent or a radioisotope.



DETAILED DESCRIPTION OF THE INVENTION

[0059] In accordance with the objects outlined above, the present invention provides novel methods for diagnosis and prognosis evaluation for Hepatitis C infection and/or its secondary consequences, as well as methods for screening for compositions which modulate Hepatitis C infection and/or its secondary consequences. Markers are identified which correlate with subsets of patients who respond to IFN-α treatment, or with subsets of patients who are retractile (non-responsive) to treatment with standard IFN-α treatment. Also provided are methods for treating Hepatitis C infection and/or its secondary consequences.


[0060] Definitions


[0061] The term “Hepatitis C infection polynucleotide” or “transcript associated with Hepatitis C infection” refers to nucleic acid polymorphic variants, alleles, mutants, and interspecies homologues isolated from cells involved in Hepatitis C infection and/or its secondary consequences, or those which allow for subsetting of infected patients. The cells from which the nucleic acids are isolated include cells such as hepatocytes and B lymphocytes, that are directly infected by virus, as well as cells that may be indirectly affected by the viral infection such as those cells involved in the immune and inflammatory response to Hepatitis C infection. The terms also refer to nucleic acids that: (1) have a nucleotide sequence with greater than about 60% nucleotide sequence identity, 65%, 70%, 75%, 80%, 85%, 90%, preferably 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% or greater nucleotide sequence identity, preferably over a region of over a region of at least about 25, 50, 100, 200, 500, 1000, or more nucleotides, to a nucleotide sequence of or associated with a gene of Tables 1A-15; or, (2) specifically hybridize under stringent hybridization conditions to a nucleic acid sequence, or the complement thereof, of Tables 1A-15 and conservatively modified variants thereof.


[0062] The term “Hepatitis C infection protein” and similar terms refer to polypeptide polymorphic variants, alleles, mutants, and interspecies homologues isolated from cells involved in Hepatitis C infection and its secondary consequences, including ones which allow for subsetting patients, e.g., into responsive or non-responsive subsets. The cells from which the polypeptides are isolated include cells such as hepatocytes and B lymphocytes, that are directly infected by virus, as well as cells that may be indirectly affected by the viral infection such as those cells involved in the immune and inflammatory response to Hepatitis C infection. The terms also refer to polypeptides that: (1) bind to antibodies, e.g., polyclonal antibodies, raised against an immunogen comprising an amino acid sequence encoded by a nucleotide sequence of or associated with a gene of Tables 1A-15, and conservatively modified variants thereof; or (2) have an amino acid sequence that has greater than about 60% amino acid sequence identity, 65%, 70%, 75%, 80%, 85%, 90%, preferably 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% or greater amino sequence identity, preferably over a region of over a region of at least about 25, 50, 100, 200, 500, 1000, or more amino acid, to an amino acid sequence encoded by a nucleotide sequence of, or associated with, a gene of Tables 1A-15.


[0063] A polynucleotide or polypeptide sequence is typically from a mammal including, but not limited to, primate, e.g., human; rodent, e.g., rat, mouse, hamster; cow, pig, horse, sheep, or other mammal, domestic or livestock. A “Hepatitis C infection polypeptide” and a “Hepatitis C infection polynucleotide,” include both naturally occurring or recombinant forms.


[0064] A “full length” Hepatitis C infection protein or nucleic acid refers to a Hepatitis C infection polypeptide or polynucleotide sequence, or a variant thereof, that contains all of the elements normally contained in one or more naturally occurring, wild type Hepatitis C infection polynucleotide or polypeptide sequences. The “full length” may be prior to, or after, various stages of post-translational processing or splicing, including alternative splicing.


[0065] “Biological sample” as used herein is a sample of biological tissue or fluid that contains nucleic acids or polypeptides, e.g., of a Hepatitis C infection protein, polynucleotide, or transcript. Such samples include, but are not limited to, tissue isolated from primates, e.g., humans, or rodents, e.g., mice and rats. Biological samples may also include sections of tissues such as biopsy and autopsy samples, frozen sections taken for histologic purposes, archival specimens, blood, plasma, serum, sputum, stool, tears, mucus, hair, skin, etc. Biological samples also include explants and primary and/or transformed cell cultures derived from patient tissues. A biological sample is typically obtained from a eukaryotic organism, most preferably a mammal such as a primate e.g., chimpanzee or human; cow; dog; cat; a rodent, e.g., guinea pig, rat, mouse; rabbit; or a bird; reptile; or fish.


[0066] “Providing a biological sample” means to obtain a biological sample for use in methods described in this invention. Most often, this will be done by removing a sample of cells from an animal, but can also be accomplished by using previously isolated cells (e.g., isolated by another person, at another time, and/or for another purpose), or by performing the methods of the invention in vivo. Archival tissues, having treatment and/or outcome history, will be particularly useful.


[0067] The terms “identical” or percent “identity,” in the context of two or more nucleic acids or polypeptide sequences, refer to two or more sequences or subsequences that are the same or have a specified percentage of amino acid residues or nucleotides that are the same (e.g., about 60% identity, preferably 70%, 75%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or higher identity over a specified region, when compared and aligned for maximum correspondence over a comparison window or designated region) as measured using a BLAST or BLAST 2.0 sequence comparison algorithms with default parameters described below, or by manual alignment and visual inspection (see, e.g., NCBI web site http://www.ncbi.nlm.nih.gov/BLAST/ or the like). Such sequences are then said to be “substantially identical.” This definition also refers to, or may be applied to, the complement of a test sequence. The definition also includes sequences that have deletions and/or additions, as well as those that have substitutions, as well as naturally occurring, e.g., polymorphic or allelic variants, and man-made variants. As described below, the preferred algorithms can account for gaps and the like. Preferably, identity exists over a region that is at least about 25 amino acids or nucleotides in length, or more preferably over a region that is 50-100 amino acids or nucleotides in length.


[0068] For sequence comparison, typically one sequence acts as a reference sequence, to which test sequences are compared. When using a sequence comparison algorithm, test and reference sequences are entered into a computer, subsequence coordinates are designated, if necessary, and sequence algorithm program parameters are designated. Preferably, default program parameters can be used, or alternative parameters can be designated. The sequence comparison algorithm then calculates the percent sequence identities for the test sequences relative to the reference sequence, based on the program parameters.


[0069] A “comparison window”, as used herein, includes reference to a segment of one of the number of contiguous positions selected from the group consisting typically of from 20 to 600, usually about 50 to about 200, more usually about 100 to about 150 in which a sequence may be compared to a reference sequence of the same number of contiguous positions after the two sequences are optimally aligned. Methods of alignment of sequences for comparison are well-known in the art. Optimal alignment of sequences for comparison can be conducted, e.g., by the local homology algorithm of Smith and Waterman (1981) Adv. Appl. Math. 2:482-489, by the homology alignment algorithm of Needleman and Wunsch (1970) J. Mol. Biol. 48:443-453, by the search for similarity method of Pearson and Lipman (1988) Proc. Nat'l. Acad. Sci. USA 85:2444-2448, by computerized implementations of these algorithms (GAP, BESTFIT, FASTA, and TFASTA in the Wisconsin Genetics Software Package, Genetics Computer Group, 575 Science Dr., Madison, Wis.), or by manual alignment and visual inspection (see, e.g., Ausubel, et al. (eds. 1995 and supplements) Current Protocols in Molecular Biology Lippincott.


[0070] Preferred examples of algorithms that are suitable for determining percent sequence identity and sequence similarity include the BLAST and BLAST 2.0 algorithms, which are described, e.g., in Altschul, et al. (1977) Nuc. Acids Res. 25:3389-3402 and Altschul, et al. (1990) J. Mol. Biol. 215:403-410. BLAST and BLAST 2.0 are used, with the parameters described herein, to determine percent sequence identity for nucleic acids and proteins of the invention. Software for performing BLAST analyses is publicly available through the National Center for Biotechnology Information (http://www.ncbi.nlm.nih.gov/). This algorithm involves first identifying high scoring sequence pairs (HSPs) by identifying short words of length W in the query sequence, which either match or satisfy some positive-valued threshold score T when aligned with a word of the same length in a database sequence. T is referred to as the neighborhood word score threshold (Altschul, et al., supra). These initial neighborhood word hits act as seeds for initiating searches to find longer HSPs containing them. The word hits are extended in both directions along each sequence for as far as the cumulative alignment score can be increased. Cumulative scores are calculated using, e.g., for nucleotide sequences, the parameters M (reward score for a pair of matching residues; always >0) and N (penalty score for mismatching residues; always <0). For amino acid sequences, a scoring matrix is used to calculate the cumulative score. Extension of the word hits in each direction are halted when: the cumulative alignment score falls off by the quantity X from its maximum achieved value; the cumulative score goes to zero or below, due to the accumulation of one or more negative-scoring residue alignments; or the end of either sequence is reached. The BLAST algorithm parameters W, T, and X determine the sensitivity and speed of the alignment. The BLASTN program (for nucleotide sequences) uses as defaults a wordlength (W) of 11, an expectation (E) of 10, M=5, N=−4 and a comparison of both strands. For amino acid sequences, the BLASTP program uses as defaults a wordlength of 3, and expectation (E) of 10, and the BLOSUM62 scoring matrix (see Henikoff and Henikoff (1989) Proc. Nat'l Acad. Sci. USA 89:10915-919) alignments (B) of 50, expectation (E) of 10, M=5, N=−4, and a comparison of both strands.


[0071] The BLAST algorithm also performs a statistical analysis of the similarity between two sequences. See, e.g., Karlin and Altschul (1993) Proc. Nat'l. Acad. Sci. USA 90:5873-5787. One measure of similarity provided by the BLAST algorithm is the smallest sum probability (P(N)), which provides an indication of the probability by which a match between two nucleotide or amino acid sequences would occur by chance. For example, a nucleic acid is considered similar to a reference sequence if the smallest sum probability in a comparison of the test nucleic acid to the reference nucleic acid is less than about 0.2, more preferably less than about 0.01, and most preferably less than about 0.001. Log values may be large negative numbers, e.g., 5, 10, 20, 30, 40, 40, 70, 90, 110, 150, 170, etc.


[0072] An indication that two nucleic acid sequences or polypeptides are substantially identical is that the polypeptide encoded by the first nucleic acid is immunologically cross reactive with the antibodies raised against the polypeptide encoded by the second nucleic acid, as described below. Thus, a polypeptide is typically substantially identical to a second polypeptide, e.g., where the two peptides differ only by conservative substitutions. Another indication that two nucleic acid sequences are substantially identical is that the two molecules or their complements hybridize to each other under stringent conditions, as described below. Yet another indication that two nucleic acid sequences are substantially identical is that the same primers can be used to amplify the sequences.


[0073] A “host cell” is a naturally occurring cell or a transformed cell that contains an expression vector and supports the replication or expression of the expression vector. Host cells may be cultured cells, explants, cells in vivo, and the like. Host cells may be prokaryotic cells such as E. coli, or eukaryotic cells such as yeast, insect, amphibian, or mammalian cells such as CHO, HeLa, and the like (see, e.g., the American Type Culture Collection catalog or web site, www.atcc.org).


[0074] The terms “isolated,” “purified,” or “biologically pure” refer to material that is substantially or essentially free from components that normally accompany it as found in its native state. Purity and homogeneity are typically determined using analytical chemistry techniques such as polyacrylamide gel electrophoresis or high performance liquid chromatography. A protein or nucleic acid that is the predominant species present in a preparation is substantially purified. In particular, an isolated nucleic acid is separated from some open reading frames that naturally flank the gene and encode proteins other than protein encoded by the gene. The term “purified” in some embodiments denotes that a nucleic acid or protein gives rise to essentially one band in an electrophoretic gel. Preferably, it means that the nucleic acid or protein is at least 85% pure, more preferably at least 95% pure, and most preferably at least 99% pure. “Purify” or “purification” in other embodiments means removing at least one contaminant from the composition to be purified. In this sense, purification does not require that the purified compound be homogenous, e.g., 100% pure.


[0075] The terms “polypeptide,” “peptide”, and “protein” are used interchangeably herein to refer to a polymer of amino acid residues. The terms apply to amino acid polymers in which one or more amino acid residue is an artificial chemical mimetic of a corresponding naturally occurring amino acid, as well as to naturally occurring amino acid polymers, those containing modified residues, and non-naturally occurring amino acid polymer.


[0076] The term “amino acid” refers to naturally occurring and synthetic amino acids, as well as amino acid analogs and amino acid mimetics that function similarly to the naturally occurring amino acids. Naturally occurring amino acids are those encoded by the genetic code, as well as those amino acids that are later modified, e.g., hydroxyproline, γ-carboxyglutamate, and O-phosphoserine. Amino acid analogs refers to compounds that have the same basic chemical structure as a naturally occurring amino acid, e.g., an α carbon that is bound to a hydrogen, a carboxyl group, an amino group, and an R group, e.g., homoserine, norleucine, methionine sulfoxide, methionine methyl sulfonium. Such analogs may have modified R groups (e.g., norleucine) or modified peptide backbones, but retain the same basic chemical structure as a naturally occurring amino acid. Amino acid mimetics refers to chemical compounds that have a structure that is different from the general chemical structure of an amino acid, but that functions similarly to a naturally occurring amino acid.


[0077] Amino acids may be referred to herein by either their commonly known three letter symbols or by the one-letter symbols recommended by the IUPAC-IUB Biochemical Nomenclature Commission. Nucleotides, likewise, may be referred to by their commonly accepted single-letter codes.


[0078] “Conservatively modified variants” applies to both amino acid and nucleic acid sequences. With respect to particular nucleic acid sequences, conservatively modified variants refers to those nucleic acids which encode identical or essentially identical amino acid sequences, or where the nucleic acid does not encode an amino acid sequence, to essentially identical or associated, e.g., naturally contiguous, sequences. Because of the degeneracy of the genetic code, a large number of functionally identical nucleic acids encode most proteins. For instance, the codons GCA, GCC, GCG, and GCU all encode the amino acid alanine. Thus, at every position where an alanine is specified by a codon, the codon can be altered to another of the corresponding codons described without altering the encoded polypeptide. Such nucleic acid variations are “silent variations,” which are one species of conservatively modified variations. Every nucleic acid sequence herein which encodes a polypeptide also describes silent variations of the nucleic acid. One of skill will recognize that in certain contexts each codon in a nucleic acid (except AUG, which is ordinarily the only codon for methionine, and TGG, which is ordinarily the only codon for tryptophan) can be modified to yield a functionally identical molecule. Accordingly, often silent variations of a nucleic acid which encodes a polypeptide is implicit in a described sequence with respect to the expression product, but not with respect to actual probe sequences.


[0079] As to amino acid sequences, one of skill will recognize that individual substitutions, deletions, or additions to a nucleic acid, peptide, polypeptide, or protein sequence which alters, adds or deletes a single amino acid or a small percentage of amino acids in the encoded sequence is a “conservatively modified variant” where the alteration results in the substitution of an amino acid with a chemically similar amino acid. Conservative substitution tables providing functionally similar amino acids are well known in the art. Such conservatively modified variants are in addition to and do not exclude polymorphic variants, interspecies homologs, and alleles of the invention. Typically conservative substitutions include for one another: 1) Alanine (A), Glycine (G); 2) Aspartic acid (D), Glutamic acid (E); 3) Asparagine (N), Glutamine (O); 4) Arginine (R), Lysine (K); 5) Isoleucine (I), Leucine (L), Methionine (M), Valine (V); 6) Phenylalanine (F), Tyrosine (Y), Tryptophan (W); 7) Serine (S), Threonine (T); and 8) Cysteine (C), Methionine (M). See, e.g., Creighton (1984) Proteins: Structure and Molecular Properties Freeman.


[0080] Macromolecular structures such as polypeptide structures can be described in terms of various levels of organization. For a general discussion of this organization, see, e.g., Alberts, et al. (1994) Molecular Biology of the Cell (3d ed.) Garland; and Cantor and Schimmel (1980) Biophysical Chemistry Part I: The Conformation of Biological Macromolecules Freeman. “Primary structure” refers to the amino acid sequence of a particular peptide. “Secondary structure” refers to locally ordered, three dimensional structures within a polypeptide. These structures are commonly known as domains. Domains are portions of a polypeptide that often form a compact unit of the polypeptide and are typically about 25-500 amino acids long. Typical domains are made up of sections of lesser organization such as stretches of β-sheet and α-helices. “Tertiary structure” refers to the complete three dimensional structure of a polypeptide monomer. “Quaternary structure” refers to the three dimensional structure formed, usually by the noncovalent association of independent tertiary units. Anisotropic terms are also known as energy terms.


[0081] “Nucleic acid” or “oligonucleotide” or “polynucleotide” or grammatical equivalents used herein means at least two nucleotides covalently linked together. Oligonucleotides are typically from about 5, 6, 7, 8, 9, 10, 12, 15, 25, 30, 40, 50 or more nucleotides in length, up to about 100 nucleotides in length. Nucleic acids and polynucleotides are a polymers of any length, including longer lengths, e.g., 200, 300, 500, 1000, 2000, 3000, 5000, 7000, 10,000, etc. A nucleic acid of the present invention will generally contain phosphodiester bonds, although in some cases, nucleic acid analogs are included that may have alternate backbones, comprising, e.g., phosphoramidate, phosphorothioate, phosphorodithioate, or O-methylphophoroamidite linkages (see Eckstein (1992) Oligonucleotides and Analogues: A Practical Approach Oxford Univ. Press); and peptide nucleic acid backbones and linkages. Other analog nucleic acids include those with positive backbones; non-ionic backbones, and non-ribose backbones, including those described in U.S. Pat. Nos. 5,235,033 and 5,034,506, and Chapters 6 and 7 in Sanghvi and Cook (eds. 1994) Carbohydrate Modifications in Antisense Research ACS Symposium Series 580. Nucleic acids containing one or more carbocyclic sugars are also included within one definition of nucleic acids. Modifications of the ribose-phosphate backbone may be done for a variety of reasons, e.g., to increase the stability and half-life of such molecules in physiological environments or as probes on a biochip. Mixtures of naturally occurring nucleic acids and analogs can be made; alternatively, mixtures of different nucleic acid analogs, and mixtures of naturally occurring nucleic acids and analogs may be made.


[0082] A variety of references disclose such nucleic acid analogs, including, for example, phosphoramidate (Beaucage, et al. (1993) Tetrahedron 49:1925-1963 and references therein; Letsinger (1970) J. Org. Chem. 35:3800-3803; Sprinzl, et al. (1977) Eur. J. Biochem. 81:579-589; Letsinger, et al. (1986) Nucl. Acids Res. 14:3487499; Sawai, et al. (1984) Chem. Lett. 805, Letsinger, et al. (1988) J. Am. Chem. Soc. 110:4470-4471; and Pauwels, et al. (1986) Chemica Scripta 26:141-149), phosphorothioate (Mag, et al. (1991) Nuc. Acids Res. 19:1437-441; and U.S. Pat. No. 5,644,048), phosphorodithioate (Brill, et al. (1989) J. Am. Chem. Soc. 111:2321-322), O-methylphophoroamidite linkages (see Eckstein (1992) Oligonucleotides and Analogues: A Practical Approach, Oxford Univ. Press), and peptide nucleic acid backbones and linkages (see Egholm (1992) J. Am. Chem. Soc. 114:1895-1897; Meier, et al. (1992) Chem. Int. Ed. Engl. 31:1008-1010; Nielsen (1993) Nature 365:566-568; and Carlsson, et al. (1996) Nature 380:207). Other analog nucleic acids include those with positive backbones (Denpcy, et al. (1995) Proc. Nat'l Acad. Sci. USA 92:6097-101); non-ionic backbones (U.S. Pat. Nos. 5,386,023, 5,637,684, 5,602,240, 5,216,141, and 4,469,863; Kiedrowski, et al. (1991) Angew. Chem. Intl. Ed. English 30:423-426; Letsinger, et al. (1988) J. Am. Chem. Soc. 110:4470-471; Jung, et al. (1994) Nucleoside and Nucleotide 13:1597-xxx; Chapters 2 and 3 in Sanghvi and Cook (eds. 1994) Carbohydrate Modifications in Antisense Research ACS Symposium Series 580; Mesmaeker, et al. (1994) Bioorganic and Medicinal Chem. Lett. 4:395-398; Jeffs, et al. (1994) J. Biomolecular NMR 34:17; and Horn, et al. (1996) Tetrahedron Lett. 37:743-xxx) and non-ribose backbones, including those described in U.S. Pat. Nos. 5,235,033 and 5,034,506, and Chapters 6 and 7 in Sanghvi and Cook (eds. 1994) Carbohydrate Modifications in Antisense Research ACS Symposium Series 580. Nucleic acids containing one or more carbocyclic sugars are also included within one definition of nucleic acids. See Jenkins, et al. (1995) Chem. Soc. Rev. pp 169-176. Several nucleic acid analogs are described in Rawls (page 35, Jun. 2, 1997) C&E News. All of these references are hereby expressly incorporated by reference.


[0083] Particularly preferred are peptide nucleic acids (PNA) which includes peptide nucleic acid analogs. These backbones are substantially non-ionic under neutral conditions, in contrast to the highly charged phosphodiester backbone of naturally occurring nucleic acids. This results in two advantages. First, the PNA backbone exhibits improved hybridization kinetics. PNAs have larger changes in the melting temperature (Tm) for mismatched versus perfectly matched base pairs. DNA and RNA typically exhibit a 2-4° C. drop in Tm for an internal mismatch. With the non-ionic PNA backbone, the drop is closer to 7-9° C. Similarly, due to their non-ionic nature, hybridization of the bases attached to these backbones is relatively insensitive to salt concentration. In addition, PNAs are not degraded by cellular enzymes, and thus can be more stable.


[0084] The nucleic acids may be single stranded or double stranded, as specified, or contain portions of both double stranded or single stranded sequence. As will be appreciated by those in the art, the depiction of a single strand also defines the sequence of the complementary strand; thus the sequences described herein also provide the complement of the sequence. The nucleic acid may be DNA, both genomic and cDNA, RNA or a hybrid, where the nucleic acid may contain combinations of deoxyribo- and ribo-nucleotides, and combinations of bases, including uracil, adenine, thymine, cytosine, guanine, inosine, xanthine hypoxanthine, isocytosine, isoguanine, etc. “Transcript” typically refers to a naturally occurring RNA, e.g., a pre-mRNA, hnRNA, or mRNA. As used herein, the term “nucleoside” includes nucleotides and nucleoside and nucleotide analogs, and modified nucleosides such as amino modified nucleosides. In addition, “nucleoside” includes non-naturally occurring analog structures. Thus, e.g., the individual units of a peptide nucleic acid, each containing a base, are referred to herein as a nucleoside.


[0085] A “label” or a “detectable moiety” is a composition detectable by spectroscopic, photochemical, biochemical, immunochemical, chemical, physiological, or other physical means. For example, useful labels include 32P, fluorescent dyes, electron-dense reagents, enzymes (e.g., as commonly used in an ELISA), biotin, digoxigenin, or haptens and proteins or other entities which can be made detectable, e.g., by incorporating a radiolabel into the peptide or used to detect antibodies specifically reactive with the peptide. The labels may be incorporated into the Hepatitis C infection nucleic acids, proteins, and antibodies. Many methods known for conjugating the antibody to the label may be employed. See, e.g., Hunter, et al. (1962) Nature 144:945; David, et al. (1974) Biochemistry 13:1014-1021; Pain, et al. (1981) J. Immunol. Meth. 40:219-230; and Nygren (1982) J. Histochem. and Cytochem. 30:407-412.


[0086] An “effector” or “effector moiety” or “effector component” is a molecule that is bound (or linked, or conjugated), either covalently, through a linker or a chemical bond, or noncovalently, through ionic, van der Waals, electrostatic, or hydrogen bonds, to an antibody. The “effector” can be a variety of molecules including, e.g., detection moieties including radioactive compounds, fluorescent compounds, an enzyme or substrate, tags such as epitope tags, a toxin; activatable moieties, a chemotherapeutic agent; a lipase; an antibiotic; or a radioisotope emitting “hard” e.g., beta radiation. The effectors may be fusion proteins, or even natural components of antibodies, e.g., Ig constant effector sequences.


[0087] A “labeled nucleic acid probe or oligonucleotide” is one that is bound, either covalently, through a linker or a chemical bond, or noncovalently, through ionic, van der Waals, electrostatic, or hydrogen bonds to a label such that the presence of the probe may be detected by detecting the presence of the label bound to the probe. Alternatively, method using high affinity interactions may achieve the same results where one of a pair of binding partners binds to the other, e.g., biotin, streptavidin.


[0088] As used herein a “nucleic acid probe or oligonucleotide” is defined as a nucleic acid capable of binding to a target nucleic acid of complementary sequence through one or more types of chemical bonds, usually through complementary base pairing, usually through hydrogen bond formation. As used herein, a probe may include natural (e.g., A, G, C, or T) or modified bases (7-deazaguanosine, inosine, etc.). In addition, the bases in a probe may be joined by a linkage other than a phosphodiester bond, so long as it does not functionally interfere with hybridization. Thus, e.g., probes may be peptide nucleic acids in which the constituent bases are joined by peptide bonds rather than phosphodiester linkages. It will be understood by one of skill in the art that probes may bind target sequences lacking complete complementarity with the probe sequence depending upon the stringency of the hybridization conditions. The probes are preferably directly labeled as with isotopes, chromophores, lumiphores, chromogens, or indirectly labeled such as with biotin to which a streptavidin complex may later bind. By assaying for the presence or absence of the probe, one can detect the presence or absence of the select sequence or subsequence. Diagnosis or prognosis may be based at the genomic level, or at the level of RNA or protein expression.


[0089] The term “recombinant” when used with reference, e.g., to a cell, or nucleic acid, protein, or vector, indicates that the cell, nucleic acid, protein or vector, has been modified by the introduction of a heterologous nucleic acid or protein or the alteration of a native nucleic acid or protein, or that the cell is derived from a cell so modified. Thus, e.g., recombinant cells express genes that are not found within the native (non-recombinant) form of the cell or express native genes that are otherwise abnormally expressed, under expressed or not expressed at all. By the term “recombinant nucleic acid” herein is meant nucleic acid, originally formed in vitro, in general, by the manipulation of nucleic acid, e.g., using polymerases and endonucleases, in a form not normally found in nature. In this manner, operably linkage of different sequences is achieved. Thus an isolated nucleic acid, in a linear form, or an expression vector formed in vitro by ligating DNA molecules that are not normally joined, are both considered recombinant for the purposes of this invention. It is understood that once a recombinant nucleic acid is made and reintroduced into a host cell or organism, it will replicate non-recombinantly, e.g., using the in vivo cellular machinery of the host cell rather than in vitro manipulations; however, such nucleic acids, once produced recombinantly, although subsequently replicated non-recombinantly, are still considered recombinant for the purposes of the invention. Similarly, a “recombinant protein” is a protein made using recombinant techniques, e.g., through the expression of a recombinant nucleic acid as depicted above.


[0090] The term “heterologous” when used with reference to portions of a nucleic acid indicates that the nucleic acid comprises two or more subsequences that are not normally found in the same relationship to each other in nature. For instance, the nucleic acid is typically recombinantly produced, having two or more sequences, e.g., from unrelated genes arranged to make a new functional nucleic acid, e.g., a promoter from one source and a coding region from another source. Similarly, a heterologous protein will often refer to two or more subsequences that are not found in the same relationship to each other in nature (e.g., a fusion protein).


[0091] A “promoter” is defined as an array of nucleic acid control sequences that direct transcription of a nucleic acid. As used herein, a promoter includes necessary nucleic acid sequences near the start site of transcription, such as, in the case of a polymerase II type promoter, a TATA element. A promoter also optionally includes distal enhancer or repressor elements, which can be located as much as several thousand base pairs from the start site of transcription. A “constitutive” promoter is a promoter that is active under most environmental and developmental conditions. An “inducible” promoter is a promoter that is active under environmental or developmental regulation. The term “operably linked” refers to a functional linkage between a nucleic acid expression control sequence (such as a promoter, or array of transcription factor binding sites) and a second nucleic acid sequence, wherein the expression control sequence directs transcription of the nucleic acid corresponding to the second sequence.


[0092] An “expression vector” is a nucleic acid construct, generated recombinantly or synthetically, with a series of specified nucleic acid elements that permit transcription of a particular nucleic acid in a host cell. The expression vector can be part of a plasmid, virus, or nucleic acid fragment. Typically, the expression vector includes a nucleic acid to be transcribed operably linked to a promoter.


[0093] The phrase “selectively (or specifically) hybridizes to” refers to the binding, duplexing, or hybridizing of a molecule only to a particular nucleotide sequence under stringent hybridization conditions when that sequence is present in a complex mixture (e.g., total cellular or library DNA or RNA).


[0094] The phrase “stringent hybridization conditions” refers to conditions under which a probe will hybridize to its target subsequence, typically in a complex mixture of nucleic acids, but to no other sequences. Stringent conditions are sequence-dependent and will be different in different circumstances. Longer sequences hybridize specifically at higher temperatures. An extensive guide to the hybridization of nucleic acids is found in “Overview of principles of hybridization and the strategy of nucleic acid assays” in Tijssen (1993) Hybridization with Nucleic Probes (Laboratory Techniques in Biochemistry and Molecular Biology) (vol. 24) Elsevier. Generally, stringent conditions are selected to be about 5-10° C. lower than the thermal melting point (Tm) for the specific sequence at a defined ionic strength pH. The Tm is the temperature (under defined ionic strength, pH, and nucleic concentration) at which 50% of the probes complementary to the target hybridize to the target sequence at equilibrium (as the target sequences are present in excess, at Tm, 50% of the probes are occupied at equilibrium). Stringent conditions will be those in which the salt concentration is less than about 1.0 M sodium ion, typically about 0.01 to 1.0 M sodium ion concentration (or other salts) at pH 7.0 to 8.3 and the temperature is at least about 30° C. for short probes (e.g., 10 to 50 nucleotides) and at least about 60° C. for long probes (e.g., greater than 50 nucleotides). Stringent conditions may also be achieved with the addition of destabilizing agents such as formamide. For selective or specific hybridization, a positive signal is at least two times background, preferably 10 times background hybridization. Exemplary stringent hybridization conditions can be as following: 50% formamide, 5×SSC, and 1% SDS, incubating at 42° C., or, 5×SSC, 1% SDS, incubating at 65° C., with wash in 0.2×SSC, and 0.1% SDS at 65° C. For PCR, a temperature of about 36° C. is typical for low stringency amplification, although annealing temperatures may vary between about 32-48° C. depending on primer length. For high stringency PCR amplification, a temperature of about 62° C. is typical, although high stringency annealing temperatures can range from about 50-65° C., depending on the primer length and specificity. Typical cycle conditions for both high and low stringency amplifications include a denaturation phase of 90-95° C. for 30-120 sec, an annealing phase lasting 30-120 sec, and an extension phase of about 72° C. for 1-2 min. Protocols and guidelines for low and high stringency amplification reactions are provided, e.g., in Innis, et al. (1990) PCR Protocols, A Guide to Methods and Applications, Academic Press, NY.


[0095] Nucleic acids that do not hybridize to each other under stringent conditions are still substantially identical if the polypeptides which they encode are substantially identical. This occurs, e.g., when a copy of a nucleic acid is created using the maximum codon degeneracy permitted by the genetic code. In such cases, the nucleic acids typically hybridize under moderately stringent hybridization conditions. Exemplary “moderately stringent hybridization conditions” include a hybridization in a buffer of 40% formamide, 1 M NaCl, 1% SDS at 37° C., and a wash in 1×SSC at 45° C. A positive hybridization is at least twice background. Those of ordinary skill will readily recognize that alternative hybridization and wash conditions can be utilized to provide conditions of similar stringency. Additional guidelines for determining hybridization parameters are provided in numerous references, e.g., Ausubel, et al. (eds. 1991 and supplements) Current Protocols in Molecular Biology Lippincott.


[0096] The phrase “functional effects” in the context of assays for testing compounds that modulate activity of a Hepatitis C infection protein includes the determination of a parameter that is indirectly or directly under the influence of the Hepatitis C infection protein or nucleic acid, e.g., a functional, physical, or chemical effect, such as the ability to decrease Hepatitis C infection or its secondary consequences. It includes ligand binding activity; “Functional effects” include in vitro, in vivo, and ex vivo activities.


[0097] By “determining the functional effect” is meant assaying for a compound that modifies, e.g., increases or decreases, a parameter that is indirectly or directly under the influence of a Hepatitis C infection protein sequence, e.g., functional, enzymatic, physical, physiological, or chemical effects. Such functional effects can be measured by any means known to those skilled in the art, e.g., changes in spectroscopic characteristics (e.g., fluorescence, absorbance, refractive index), hydrodynamic (e.g., shape), chromatographic, or solubility properties for the protein, measuring inducible markers or transcriptional activation of the Hepatitis C infection protein; measuring binding activity or binding assays, e.g., binding to antibodies or other ligands, and measuring cellular proliferation. Determination of the functional effect of a compound on Hepatitis C infection and its secondary consequences can also be performed using assays known to those of skill in the art such as an in vitro assays. The functional effects can be evaluated by many means known to those skilled in the art, e.g., measurement of changes in RNA or protein levels for Hepatitis C infection-associated sequences, measurement of RNA stability, identification of downstream or reporter gene expression (CAT, luciferase, β-gal, GFP, and the like), e.g., via chemiluminescence, fluorescence, calorimetric reactions, antibody binding, inducible markers, and ligand binding assays.


[0098] “Inhibitors”, “activators”, and “modulators” of Hepatitis C infection polynucleotide and polypeptide sequences are used to refer to activating, inhibitory, or modulating molecules or compounds identified using in vitro and in vivo assays of polynucleotide and polypeptide sequences associated with Hepatitis C infection and/or its secondary consequences. Inhibitors are compounds that, e.g., bind to, partially or totally block activity, decrease, prevent, delay activation, inactivate, desensitize, or down regulate the activity or expression of Hepatitis C infection proteins, e.g., antagonists. Antisense nucleic acids may seem to inhibit expression and subsequent function of the protein. “Activators” are compounds that increase, open, activate, facilitate, enhance activation, sensitize, agonize, or up regulate Hepatitis C infection protein activity. Inhibitors, activators, or modulators also include genetically modified versions of Hepatitis C infection proteins, e.g., versions with altered activity, as well as naturally occurring and synthetic ligands, antagonists, agonists, antibodies, small chemical molecules, and the like. Such assays for inhibitors and activators include, e.g., expressing the Hepatitis C infection protein in vitro, in cells, or cell membranes, applying putative modulator compounds, and then determining the functional effects on activity, as described above. Activators and inhibitors of Hepatitis C infection and its secondary consequences can also be identified by incubating Hepatitis C infected cells and tissues or cells and tissues secondarily affected by Hepatitis C infection with the test compound and determining increases or decreases in the expression of 1 or more Hepatitis C infection proteins, e.g., 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 40, 50, or more Hepatitis C infection proteins, such as Hepatitis C infection proteins encoded by the sequences set out in Tables 1A-15.


[0099] Samples or assays comprising Hepatitis C infection proteins that are treated with a potential activator, inhibitor, or modulator are compared to control samples without the inhibitor, activator, or modulator to examine the extent of inhibition. Control samples (untreated with inhibitors) are assigned a relative protein activity value of 100%. Inhibition of a polypeptide is achieved when the activity value relative to the control is about 80%, preferably about 50%, more preferably about 25-0%. Activation of a Hepatitis C infection polypeptide is achieved when the activity value relative to the control (untreated with activators) is about 110%, more preferably 150%, more preferably 200-500% (e.g., about two to five fold higher relative to the control), more preferably about 1000-3000% higher. However, sometimes selectivity or specificity of response in the correct organs may be significant consideration relative to absolute change.


[0100] “Antibody” refers to a polypeptide comprising a framework region from an immunoglobulin gene or fragments thereof that specifically binds and recognizes an antigen. The recognized immunoglobulin genes include the kappa, lambda, alpha, gamma, delta, epsilon, and mu constant region genes, as well as the myriad immunoglobulin variable region genes. Light chains are classified as either kappa or lambda. Heavy chains are classified as gamma, mu, alpha, delta, or epsilon, which in turn define the immunoglobulin classes, IgG, IgM, IgA, IgD, and IgE, respectively. Typically, the antigen-binding region of an antibody or its functional equivalent will be most critical in specificity and affinity of binding. See Paul (ed. 1999) Fundamental Immunology (4th ed.) Raven.


[0101] An exemplary imrnunoglobulin (antibody) structural unit comprises a tetramer. Each tetramer is composed of two identical pairs of polypeptide chains, each pair having one “light” (about 25 kD) and one “heavy” chain (about 50-70 kD). The N-terminus of each chain defines a variable region of about 100 to 110 or more amino acids primarily responsible for antigen recognition. The terms variable light chain (VL) and variable heavy chain (VH) refer to these light and heavy chains respectively.


[0102] Antibodies exist, e.g., as intact immunoglobulins or as a number of well-characterized fragments produced by digestion with various peptidases. Thus, e.g., pepsin digests an antibody below the disulfide linkages in the hinge region to produce F(ab)′2, a dimer of Fab which itself is a light chain joined to VH-CH1 by a disulfide bond. The F(ab)′2 may be reduced under mild conditions to break the disulfide linkage in the hinge region, thereby converting the F(ab)′2 dimer into an Fab′ monomer. The Fab′ monomer is essentially Fab with part of the hinge region. See Paul (ed. 1999) Fundamental Immunology (4th ed.) Raven. While various antibody fragments are defined in terms of the digestion of an intact antibody, it will be appreciated that such fragments may be synthesized de novo either chemically or by using recombinant DNA methodology. Thus, the term antibody, as used herein, also includes antibody fragments either produced by the modification of whole antibodies, or those synthesized de novo using recombinant DNA methodologies (e.g., single chain Fv) or those identified using phage display libraries (see, e.g., McCafferty, et al. (1990) Nature 348:552-554).


[0103] For preparation of antibodies, e.g., recombinant, monoclonal, or polyclonal antibodies, many techniques can be used. See, e.g., Kohler and Milstein (1975) Nature 256:495-497; Kozbor, et al. (1983) Immunology Today 4:72; Cole, et al. (1985) pp. 77-96 in Reisfeld and Sell (1985) Monoclonal Antibodies and Cancer Therapy Liss; Coligan (1991) Current Protocols in Immunology Lippincott; Harlow and Lane (1988) Antibodies: A Laboratory Manual CSH Press; and Goding (1986) Monoclonal Antibodies: Principles and Practice (2d ed.) Academic Press. Techniques for the production of single chain antibodies (U.S. Pat. No. 4,946,778) can be adapted to produce antibodies to polypeptides of this invention. Also, transgenic mice, or other organisms such as other mammals, may be used to express humanized antibodies. Alternatively, phage display technology can be used to identify antibodies and heteromeric Fab fragments that specifically bind to selected antigens. See, e.g., McCafferty, et al. (1990) Nature 348:552-554; Marks, et al. (1992) Biotechnology 10:779-783.


[0104] A “chimeric antibody” is an antibody molecule in which (a) the constant region, or a portion thereof, is altered, replaced or exchanged so that the antigen binding site (variable region) is linked to a constant region of a different or altered class, effector function and/or species, or an entirely different molecule which confers new properties to the chimeric antibody, e.g., an enzyme, toxin, hormone, growth factor, drug, etc.; or (b) the variable region, or a portion thereof, is altered, replaced or exchanged with a variable region having a different or altered antigen specificity.



Identification of Hepatitis C Infection-Associated Sequences

[0105] In one aspect, the expression levels of genes are determined in different patient samples for which diagnosis information is desired, to provide expression profiles. An expression profile of a particular sample is essentially a “fingerprint” of the state of the sample; while two states may have any particular gene similarly expressed, the evaluation of a number of genes simultaneously allows the generation of a gene expression profile that is characteristic of the state of the cell. That is, normal tissue may be distinguished from Hepatitis C infected tissue or cells or tissues and cells affected secondarily by Hepatitis C infection, by comparison with tissue or cell samples from uninfected individuals. By comparison of expression profiles derived from infected and uninfected individuals information regarding which genes are important (including both up- and down-regulation of genes) in each of these states is obtained.


[0106] The identification of sequences that are differentially expressed in Hepatitis C infected and non-infected individuals allows the use of this information in a number of ways. For example, a particular treatment regime may be evaluated: does a drug act to down-regulate Hepatitis C infection and/or its secondary effects, in a particular patient. Similarly, diagnosis and treatment outcomes may be done or confirmed by comparing patient samples with the known expression profiles. Furthermore, these gene expression profiles (or individual genes) allow screening of drug candidates with an eye to mimicking or altering a particular expression profile; e.g., screening can be done for drugs that suppress certain aspects of the Hepatitis C infected patient's expression profile. This may be done by making biochips comprising sets of the important Hepatitis C infection genes, which can then be used in these screens. These methods can also be done on the protein basis; that is, protein expression levels of the Hepatitis C infection proteins can be evaluated for diagnostic purposes or to screen candidate agents. In addition, the Hepatitis C infection nucleic acid sequences can be administered for gene therapy purposes, including the administration of antisense nucleic acids, or the Hepatitis C infection proteins (including antibodies and other modulators thereof) administered as therapeutic drugs.


[0107] Thus the present invention provides nucleic acid and protein sequences that are differentially expressed in Hepatitis C infected individuals, herein termed “Hepatitis C infection sequences.” Further, the invention provides means to distinguish subsets of infected individuals; e.g., those who will or will not respond to particular therapeutic treatment. As outlined below, Hepatitis C infection sequences include those that are up-regulated (e.g., expressed at a higher level) during the course of Hepatitis C infection, as well as those that are down-regulated (e.g., expressed at a lower level). In a preferred embodiment, the Hepatitis C infection sequences are from primates, e.g., humans; however, as will be appreciated by those in the art, Hepatitis C infection sequences from other organisms may be useful in animal models of disease and drug evaluation; thus, other Hepatitis C infection sequences are provided, from vertebrates, including mammals, including rodents (rats, mice, hamsters, guinea pigs, etc.), primates, farm animals (including sheep, goats, pigs, cows, horses, etc.), and pets (e.g., dogs, cats, etc.). Hepatitis C infection sequences from other organisms may be obtained using the techniques outlined below.


[0108] Hepatitis C infection sequences can include both nucleic acid and amino acid sequences. As will be appreciated by those in the art and is more fully outlined below, Hepatitis C infection nucleic acid sequences are useful in a variety of applications, including diagnostic applications, which will detect naturally occurring nucleic acids, as well as screening applications; e.g., biochips comprising nucleic acid probes or PCR microtiter plates with selected probes to the Hepatitis C infection sequences can be generated.


[0109] A Hepatitis C infection sequence can be initially identified by substantial nucleic acid and/or amino acid sequence homology to the Hepatitis C infection sequences outlined herein. Such homology can be based upon the overall nucleic acid or amino acid sequence, and is generally determined as outlined below, using either homology programs or hybridization conditions.


[0110] For identifying Hepatitis C infection-associated sequences, the screen typically includes comparing the expression of genes from different tissues, but typically liver biopsy samples, of infected versus uninfected individuals. Analysis of samples from treatment responsive and treatment non-responsive patients may also be performed. Samples obtained are applied, e.g., to biochips comprising nucleic acid probes. The samples are first microdissected, if applicable, and treated as is known in the art for the preparation of mRNA. Suitable biochips are commercially available, e.g., from Affymetrix. Gene expression profiles as described herein are generated and the data analyzed. Other means for analysis may also be performed, e.g., PCR based, protein, or antibody diagnosis.


[0111] In one embodiment, the genes showing changes in expression as between normal and disease states are compared. In a preferred embodiment, those genes identified during the screen of infected individuals, that are expressed in any significant amount in uninfected individuals are removed from the profile, although in some embodiments, this is not necessary. That is, when screening for drugs, it is usually preferable that the target be disease specific, to minimize possible side effects.


[0112] In a preferred embodiment, Hepatitis C infection sequences are those that are up-regulated during Hepatitis C infection; that is, the expression of these genes is higher in the tissues of Hepatitis C infected individuals as compared to the tissues of uninfected individuals. “Up-regulation” as used herein often means at least about a two-fold change, preferably at least about a three fold change, with at least about five-fold or higher being preferred. Unigene cluster identification numbers and accession numbers herein are for the GenBank sequence database and the sequences of the accession numbers are hereby expressly incorporated by reference. GenBank is known in the art, see, e.g., Benson, et al. (1998) Nuc. Acids Res. 26:1-7; and http://www.ncbi.nlm.nih.gov/. Sequences are also available in other databases, e.g., European Molecular Biology Laboratory (EMBL) and DNA Database of Japan (DDBJ). In some situations, the sequences may be derived from assembly of available sequences or be predicted from genomic DNA using exon prediction algorithms, such as FGENESH. See Salamov and Solovyev (2000) Genome Res. 10:516-522. In other situations, sequences have been derived from cloning and sequencing of isolated nucleic acids.


[0113] In another preferred embodiment, Hepatitis C infection sequences are those that are down-regulated in Hepatitis C infected individuals; that is, the expression of these genes is lower in tissue from individuals infected with Hepatitis C as compared to non-infected individuals. “Down-regulation” as used herein often means at least about a two-fold change, preferably at least about a three fold change, with at least about five-fold or higher being preferred.


[0114] In other embodiments, sequences which are diagnostic, or prognostic, of response to treatment are identified. In particular, markers which are diagnostic of either response or non-response to treatment are described.


[0115] Informatics


[0116] The ability to identify genes that are over or under expressed during Hepatitis C infection or treatment can additionally provide high-resolution, high-sensitivity datasets which can be used in the areas of diagnostics, therapeutics, drug development, pharmacogenetics, protein structure, biosensor development, and other related areas. For example, the expression profiles can be used in diagnostic or prognostic evaluation of patients suffering from liver conditions, particularly Hepatitis infections. Or as another example, subcellular toxicological information can be generated to better direct drug structure and activity correlation. See Anderson (Jun. 11-12, 1998) Pharmaceutical Proteomics: Targets, Mechanism, and Function, paper presented at the IBC Proteomics conference, Coronado, Calif. Subcellular toxicological information can also be utilized in a biological sensor device to predict the likely toxicological effect of chemical exposures and likely tolerable exposure thresholds (see U.S. Pat. No. 5,811,231). Similar advantages accrue from datasets relevant to other biomolecules and bioactive agents (e.g., nucleic acids, saccharides, lipids, drugs, and the like).


[0117] Thus, in another embodiment, the present invention provides a database that includes at least one set of assay data. The data contained in the database is acquired, e.g., using array analysis either singly or in a library format. The database can be in many forms in which data can be maintained and transmitted, but is preferably an electronic database. The electronic database of the invention can be maintained on any electronic device allowing for the storage of and access to the database, such as a personal computer, but is preferably distributed on a wide area network, such as the World Wide Web.


[0118] The focus of the present section on databases that include nucleic acid, and corresponding peptide, sequence data is for clarity of illustration only. It will be apparent to those of skill in the art that similar databases can be assembled for an assay data acquired using an assay of the invention.


[0119] The compositions and methods for identifying and/or quantitating the relative and/or absolute abundance of a variety of molecular and macromolecular species from a biological sample experiencing hepatitis C infection or its secondary consequences, e.g., the identification of Hepatitis C infection-associated sequences described herein, provide an abundance of information, which can be correlated with pathological conditions, drug testing, therapeutic monitoring, gene-disease causal linkages, identification of correlates of immunity and physiological status, subsetting of patients into particular treatment responsive or non-responsive groups, among others. Although the data generated from the assays of the invention is suited for manual review and analysis, in a preferred embodiment, prior data processing using high-speed computers is utilized.


[0120] An array of methods for indexing and retrieving biomolecular information is known in the art. For example, U.S. Pat. Nos. 6,023,659 and 5,966,712 disclose a relational database system for storing biomolecular sequence information in a manner that allows sequences to be catalogued and searched according to one or more protein function hierarchies. U.S. Pat. No. 5,953,727 discloses a relational database having sequence records containing information in a format that allows a collection of partial-length DNA sequences to be catalogued and searched according to association with one or more sequencing projects for obtaining full-length sequences from the collection of partial length sequences. U.S. Pat. No. 5,706,498 discloses a gene database retrieval system for making a retrieval of a gene sequence similar to a sequence data item in a gene database based on the degree of similarity between a key sequence and a target sequence. U.S. Pat. No. 5,538,897 discloses a method using mass spectroscopy fragmentation patterns of peptides to identify amino acid sequences in computer databases by comparison of predicted mass spectra with experimentally-derived mass spectra using a closeness-of-fit measure. U.S. Pat. No. 5,926,818 discloses a multi-dimensional database comprising a functionality for multi-dimensional data analysis described as on-line analytical processing (OLAP), which entails the consolidation of projected and actual data according to more than one consolidation path or dimension. U.S. Pat. No. 5,295,261 reports a hybrid database structure in which the fields of each database record are divided into two classes, navigational and informational data, with navigational fields stored in a hierarchical topological map which can be viewed as a tree structure or as the merger of two or more such tree structures. See also Mount (2001) Bioinformatics: Sequence and Genome Analysis CSH Press, NY; Durbin, et al. (eds. 1999) Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids Cambridge Univ. Press; Baxevanis and Oeullette (eds. 1998) Bioinformatics: A Practical Guide to the Analysis of Genes and Proteins (2d ed.) Wiley-Liss; Rashidi and Buehler (1999) Bioinformatics: Basic Applications in Biological Science and Medicine CRC Press; Setubal, et al. (eds. 1997) Introduction to Computational Molecular Biology Brooks/Cole; Misener and Krawetz (eds. 2000) Bioinformatics: Methods and Protocols Humana Press; Higgins and Taylor (eds. 2000) Bioinformatics: Sequence, Structure, and Databanks: A Practical Approach Oxford Univ. Press; Brown (2001) Bioinformatics: A Biologist's Guide to Biocomputing and the Internet Eaton Pub.; Han and Kamber (2000) Data Mining: Concepts and Techniques Kaufmann Pub.; and Waterman (1995) Introduction to Computational Biology: Maps, Sequences, and Genomes Chap and Hall.


[0121] The present invention provides a computer database comprising a computer and software for storing in computer-retrievable form assay data records cross-tabulated, e.g., with data specifying the source of the target-containing sample from which each sequence specificity record was obtained, and perhaps patient data or response.


[0122] In an exemplary embodiment, at least one of the sources of target-containing sample is from a control tissue sample known to be free of pathological disorders. In a variation, at least one of the sources is a known pathological tissue specimen. In another variation, the assay records cross-tabulate one or more of the following parameters for each target species in a sample: (1) a unique identification code, which can include, e.g., a target molecular structure and/or characteristic separation coordinate (e.g., electrophoretic coordinates); (2) sample source; (3) absolute and/or relative quantity of the target species present in the sample; and (4) patient history or eventual treatment outcome.


[0123] The invention also provides for the storage and retrieval of a collection of target data in a computer data storage apparatus, which can include magnetic disks, optical disks, magneto-optical disks, DRAM, SRAM, SGRAM, SDRAM, RDRAM, DDR RAM, magnetic bubble memory devices, and other data storage devices, including CPU registers and on-CPU data storage arrays. Typically, the target data records are stored as a bit pattern in an array of magnetic domains on a magnetizable medium or as an array of charge states or transistor gate states, such as an array of cells in a DRAM device (e.g., each cell comprised of a transistor and a charge storage area, which may be on the transistor). In one embodiment, the invention provides such storage devices, and computer systems built therewith, comprising a bit pattern encoding a protein expression fingerprint record comprising unique identifiers for at least 10 target data records cross-tabulated with target source.


[0124] When the target is a peptide or nucleic acid, the invention preferably provides a method for identifying related peptide or nucleic acid sequences, comprising performing a computerized comparison between a peptide or nucleic acid sequence assay record stored in or retrieved from a computer storage device or database and at least one other sequence. The comparison can include a sequence analysis or comparison algorithm or computer program embodiment thereof (e.g., FASTA, TFASTA, GAP, BESTFIT) and/or the comparison may be of the relative amount of a peptide or nucleic acid sequence in a pool of sequences determined from a polypeptide or nucleic acid sample of a specimen.


[0125] The invention also preferably provides a magnetic disk, such as an IBM-compatible (DOS, Windows, Windows95/98/2000, Windows NT, OS/2) or other format (e.g., Linux, SunOS, Solaris, AIX, SCO Unix, VMS, MV, Macintosh, etc.) floppy diskette or hard (fixed, Winchester) disk drive, comprising a bit pattern encoding data from an assay of the invention in a file format suitable for retrieval and processing in a computerized sequence analysis, comparison, or relative quantitation method.


[0126] The invention also provides a network, comprising a plurality of computing devices linked via a data link, such as an Ethernet cable (coax or 10BaseT), telephone line, ISDN line, wireless network, optical fiber, or other suitable signal transmission medium, whereby at least one network device (e.g., computer, disk array, etc.) comprises a pattern of magnetic domains (e.g., magnetic disk) and/or charge domains (e.g., an array of DRAM cells) composing a bit pattern encoding data acquired from an assay of the invention.


[0127] The invention also provides a method for transmitting assay data that includes generating an electronic signal on an electronic communications device, such as a modem, ISDN terminal adapter, DSL, cable modem, ATM switch, or the like, wherein the signal includes (in native or encrypted format) a bit pattern encoding data from an assay or a database comprising a plurality of assay results obtained by the method of the invention.


[0128] In a preferred embodiment, the invention provides a computer system for comparing a query target to a database containing an array of data structures, such as an assay result obtained by the method of the invention, and ranking database targets based on the degree of identity and gap weight to the target data. A central processor is preferably initialized to load and execute the computer program for alignment and/or comparison of the assay results. Data for a query target is entered into the central processor via an I/O device. Execution of the computer program results in the central processor retrieving the assay data from the data file, which comprises a binary description of an assay result.


[0129] The target data or record and the computer program can be transferred to secondary memory, which is typically random access memory (e.g., DRAM, SRAM, SGRAM, or SDRAM). Targets are ranked according to the degree of correspondence between a selected assay characteristic (e.g., binding to a selected affinity moiety) and the same characteristic of the query target and results are output via an I/O device. For example, a central processor can be a conventional computer (e.g., Intel Pentium, PowerPC, Alpha, PA-8000, SPARC, MIPS 4400, MIPS 10000, VAX, etc.); a program can be a commercial or public domain molecular biology software package (e.g., UWGCG Sequence Analysis Software, Darwin); a data file can be an optical or magnetic disk, a data server, a memory device (e.g., DRAM, SRAM, SGRAM, SDRAM, EPROM, bubble memory, flash memory, etc.); an I/O device can be a terminal comprising a video display and a keyboard, a modem, an ISDN terminal adapter, an Ethernet port, a punched card reader, a magnetic strip reader, or other suitable I/O device.


[0130] The invention also preferably provides the use of a computer system, such as that described above, which comprises: (1) a computer; (2) a stored bit pattern encoding a collection of peptide sequence specificity records obtained by the methods of the invention, which may be stored in the computer; (3) a comparison target, such as a query target; and (4) a program for alignment and comparison, typically with rank-ordering of comparison results on the basis of computed similarity values.


[0131] Characteristics of Hepatitis C Infection-Associated Proteins


[0132] Hepatitis C infection proteins of the present invention may be classified as secreted proteins, transmembrane proteins, or intracellular proteins. In one embodiment, the Hepatitis C infection protein is an intracellular protein. Intracellular proteins may be found in the cytoplasm and/or in the nucleus. Intracellular proteins are involved in all aspects of cellular function and replication (including, e.g., signaling pathways); aberrant expression of such proteins often results in unregulated or disregulated cellular processes. See, e.g., Alberts, et al. (eds. 1994) Molecular Biology of the Cell (3d ed.) Garland. For example, many intracellular proteins have enzymatic activity such as protein kinase activity, protein phosphatase activity, protease activity, nucleotide cyclase activity, polymerase activity, and the like. Intracellular proteins also serve as docking proteins that are involved in organizing complexes of proteins, or targeting proteins to various subcellular localizations, and are involved in maintaining the structural integrity of organelles. In particular, many of the genes identified in the analysis of the present invention may result from virus infection or related physiology, e.g., immunological responses, etc.


[0133] An increasingly appreciated concept in characterizing proteins is the presence in the proteins of one or more motifs for which defined functions have been attributed. In addition to the highly conserved sequences found in the enzymatic domain of proteins, highly conserved sequences have been identified in proteins that are involved in protein-protein interaction. For example, Src-homology-2 (SH2) domains bind tyrosine-phosphorylated targets in a sequence dependent manner. PTB domains, which are distinct from SH2 domains, also bind tyrosine phosphorylated targets. SH3 domains bind to proline-rich targets. In addition, PH domains, tetratricopeptide repeats, and WD domains to name only a few, have been shown to mediate protein-protein interactions. Some of these may also be involved in binding to phospholipids or other second messengers. As will be appreciated by one of ordinary skill in the art, these motifs can be identified on the basis of primary sequence; thus, an analysis of the sequence of proteins may provide insight into both the enzymatic potential of the molecule and/or molecules with which the protein may associate. One useful database is Pfam (protein families), which is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Versions are available via the internet from Washington University in St. Louis, the Sanger Center in England, and the Karolinska Institute in Sweden. See, e.g., Bateman, et al. (2000) Nuc. Acids Res. 28:263-266; Sonnhammer, et al. (1997) Proteins 28:405-420; Bateman, et al. (1999) Nuc. Acids Res. 27:260-262; and Sonnhammer, et al. (1998) Nuc. Acids Res. 26:320-322.


[0134] In another embodiment, the Hepatitis C infection sequences are transmembrane proteins. Transmembrane proteins are molecules that span a phospholipid bilayer of a cell. They may have an intracellular domain, an extracellular domain, or both. The intracellular domains of such proteins may have a number of functions including those already described for intracellular proteins. For example, the intracellular domain may have enzymatic activity and/or may serve as a binding site for additional proteins. Frequently the intracellular domain of transmembrane proteins serves both roles. For example certain receptor tyrosine kinases have both protein kinase activity and SH2 domains. In addition, autophosphorylation of tyrosines on the receptor molecule itself, creates binding sites for additional SH2 domain containing proteins.


[0135] Transmembrane proteins may contain from one to many transmembrane domains. For example, receptor tyrosine kinases, certain cytokine receptors, receptor guanylyl cyclases, and receptor serine/threonine protein kinases contain a single transmembrane domain. However, various other proteins including channels and adenylyl cyclases contain numerous transmembrane domains. Many important cell surface receptors such as G protein coupled receptors (GPCRs) are classified as “seven transmembrane domain” proteins, as they contain 7 membrane spanning regions. Characteristics of transmembrane domains include approximately 20 consecutive hydrophobic amino acids that may be followed by charged amino acids. Therefore, upon analysis of the amino acid sequence of a particular protein, the localization and number of transmembrane domains within the protein may be predicted (see, e.g., PSORT web site http://psort.nibb.ac.jp/). Important transmembrane protein receptors include, but are not limited to, the insulin receptor, insulin-like growth factor receptor, human growth hormone receptor, glucose transporters, transferrin receptor, epidermal growth factor receptor, low density lipoprotein receptor, epidermal growth factor receptor, leptin receptor, interleukin receptors, e.g., IL-1 receptor, IL-2 receptor, and other identified cytokine receptors, and chemokine receptors.


[0136] The extracellular domains of transmembrane proteins are diverse; however, conserved motifs are found repeatedly among various extracellular domains. Conserved structure and/or functions have been ascribed to different extracellular motifs. Many extracellular domains are involved in binding to other molecules. In one aspect, extracellular domains are found on receptors. Factors that bind the receptor domain include circulating ligands, which may be peptides, proteins, or small molecules such as adenosine and the like. For example, growth factors such as EGF, FGF, and PDGF are circulating growth factors that bind to their cognate receptors to initiate a variety of cellular responses. Other factors include cytokines, mitogenic factors, neurotrophic factors, and the like. Extracellular domains also bind to cell-associated molecules. In this respect, they mediate cell-cell interactions. Cell-associated ligands can be tethered to the cell, e.g., via a glycosylphosphatidylinositol (GPI) anchor, or may themselves be transmembrane proteins. Extracellular domains also associate with the extracellular matrix and contribute to the maintenance of the cell structure.


[0137] Transmembrane proteins that are associated with Hepatitis C infection are particularly preferred in the present invention as they are readily accessible targets for immunotherapeutics, as are described herein. In addition, as outlined below, transmembrane proteins can be also useful in imaging modalities. Antibodies may be used to label such readily accessible proteins in situ. Alternatively, antibodies can also label intracellular proteins, in which case samples are typically permeablized to provide access to intracellular proteins. Diagnosis may be of biopsy samples isolated from the individual, including serum or liver samples.


[0138] It will also be appreciated by those in the art that a transmembrane protein can be made soluble by removing transmembrane sequences, e.g., through recombinant methods. Furthermore, transmembrane proteins that have been made soluble can be made to be secreted through recombinant means by adding an appropriate signal sequence. Alternatively, normal or pathological processes may result in the release of membrane or intracellular proteins into the serum, e.g., by proteolytic processing to release portions of a protein into a body fluid.


[0139] In another embodiment, the Hepatitis C infection proteins are secreted proteins; the secretion of which can be either constitutive or regulated. These proteins have a signal peptide or signal sequence that targets the molecule to the secretory pathway. Secreted proteins are involved in numerous physiological events; often by virtue of their circulating nature, they serve to transmit signals to various other cell types. The secreted protein may function in an autocrine manner (acting on the cell that secreted the factor), a paracrine manner (acting on cells in close proximity to the cell that secreted the factor), an endocrine manner (acting on cells at a distance, e.g., secretion into the blood stream), or exocrine (secretion, e.g., through a duct or to adjacent epithelial surface as sweat glands, sebaceous glands, pancreatic ducts, lacrimal glands, mammary glands, wax producing glands of the ear, etc.). Thus secreted molecules find use in modulating or altering numerous aspects of physiology. Hepatitis C infection proteins that are secreted proteins are particularly preferred in the present invention as they serve as good therapeutic targets and also as diagnostic markers, e.g., for blood, plasma, serum, or stool tests. Diagnosis may be direct for the protein, or of a response to the protein, e.g., presence of antibodies generated to the protein. Those which are enzymes may be antibody or small molecule targets. Others may be useful as vaccine targets, e.g., via CTL mechanisms.


[0140] Use of Hepatitis C Infection Nucleic Acids


[0141] As described above, a Hepatitis C infection sequence is initially identified by substantial nucleic acid and/or amino acid sequence homology or linkage to the Hepatitis C infection sequences outlined herein. Such homology can be based upon the overall nucleic acid or amino acid sequence, and is generally determined as outlined below, using either homology programs or hybridization conditions. Typically, linked sequences on a mRNA are found on the same molecule.


[0142] The Hepatitis C infection nucleic acid sequences of the invention, e.g., the sequences in Tables 1A-15, can be fragments of larger genes, e.g., they are nucleic acid segments. “Genes” in this context includes coding regions, non-coding regions, and mixtures of coding and non-coding regions. Accordingly, as will be appreciated by those in the art, using the sequences provided herein, extended sequences, in either direction, of the Hepatitis C infection genes can be obtained, using techniques well known in the art for cloning either longer sequences or the full length sequences; see Ausubel, et al., supra. Much can be done by informatics and many sequences can be clustered to include multiple sequences corresponding to a single gene, e.g., systems such as UniGene (see, http://www.ncbi.nlm.nih.gov/UniGene/).


[0143] Once the Hepatitis C infection nucleic acid is identified, it can be cloned and, if necessary, its constituent parts recombined to form the entire Hepatitis C infection nucleic acid coding regions or the entire mRNA sequence. Once isolated from its natural source, e.g., contained within a plasmid or other vector or excised therefrom as a linear nucleic acid segment, the recombinant Hepatitis C infection nucleic acid can be further used as a probe to identify and isolate other Hepatitis C infection nucleic acids, e.g., extended coding regions. It can also be used as a “precursor” nucleic acid to make modified or variant Hepatitis C infection nucleic acids and proteins.


[0144] The Hepatitis C infection nucleic acids of the present invention are used in several ways. In a first embodiment, nucleic acid probes to the Hepatitis C infection nucleic acids are made and attached to biochips to be used in screening and diagnostic methods, as outlined below, or for administration, e.g., for gene therapy, vaccine, and/or antisense applications. Alternatively, the Hepatitis C infection nucleic acids that include coding regions of Hepatitis C infection proteins can be put into expression vectors for the expression of Hepatitis C infection proteins, again for screening purposes, for administration to a patient, to generate a vaccine, or to generate antibodies.


[0145] In a preferred embodiment, nucleic acid probes to Hepatitis C infection nucleic acids (both the nucleic acid sequences outlined in the figures and/or the complements thereof) are made. The nucleic acid probes attached to the biochip are designed to be substantially complementary to the Hepatitis C infection nucleic acids, e.g., the target sequence (either the target sequence of the sample or to other probe sequences, e.g., in sandwich assays), such that hybridization of the target sequence and the probes of the present invention occurs. As outlined below, this complementarity need not be perfect; there may be any number of base pair mismatches which will interfere with hybridization between the target sequence and the single stranded nucleic acids of the present invention. However, if the number of mutations is so great that no hybridization can occur under even the least stringent of hybridization conditions, the sequence is not a complementary target sequence. Thus, by “substantially complementary” herein is meant that the probes are sufficiently complementary to the target sequences to hybridize under normal reaction conditions, particularly high stringency conditions, as outlined herein. PCR technologies may also be applicable.


[0146] A nucleic acid probe is generally single stranded but can be partially single and partially double stranded. The strandedness of the probe is dictated by the structure, composition, and properties of the target sequence. In general, the nucleic acid probes range from about 8-100 bases long, with from about 10-80 bases being preferred, and from about 30-50 bases being particularly preferred. That is, generally whole genes are not used. In some embodiments, much longer nucleic acids can be used, up to hundreds of bases.


[0147] In a preferred embodiment, more than one probe per sequence is used, with either overlapping probes or probes to different sections of the target being used. That is, two, three, four or more probes, with three being preferred, are used to build in a redundancy for a particular target. The probes can be overlapping (e.g., have some sequence in common), or separate. In some cases, PCR primers may be used to amplify signal for higher sensitivity.


[0148] Nucleic acids can be attached or immobilized to a solid support in a wide variety of ways. By “immobilized” and grammatical equivalents herein is meant the association or binding between the nucleic acid probe and a solid support is sufficient to be Tables 1A-15 under the conditions of binding, washing, analysis, and removal as outlined below. The binding can typically be covalent or non-covalent. By “non-covalent binding” and grammatical equivalents herein is meant one or more of electrostatic, hydrophilic, and hydrophobic interactions. Included in non-covalent binding is the covalent attachment of a molecule, such as, streptavidin to the support and the non-covalent binding of the biotinylated probe to the streptavidin. By “covalent binding” and grammatical equivalents herein is meant that the two moieties, the solid support and the probe, are attached by at least one bond, including sigma bonds, pi bonds, and coordination bonds. Covalent bonds can be formed directly between the probe and the solid support or can be formed by a cross linker or by inclusion of a specific reactive group on either the solid support or the probe or both molecules. Immobilization may also involve a combination of covalent and non-covalent interactions.


[0149] In general, the probes are attached to the biochip in a wide variety of ways, as will be appreciated by those in the art. As described herein, the nucleic acids can either be synthesized first, with subsequent attachment to the biochip, or can be directly synthesized on the biochip.


[0150] The biochip comprises a suitable solid substrate. By “substrate” or “solid support” or other grammatical equivalents herein is meant a material that can be modified to contain discrete individual sites appropriate for the attachment or association of the nucleic acid probes and is amenable to at least one detection method. As will be appreciated by those in the art, the number of possible substrates is very large, and include, but are not limited to, glass and modified or functionalized glass, plastics (including acrylics, polystyrene, and copolymers of styrene and other materials, polypropylene, polyethylene, polybutylene, polyurethanes, TeflonJ, etc.), polysaccharides, nylon or nitrocellulose, resins, silica or silica-based materials including silicon and modified silicon, carbon, metals, inorganic glasses, plastics, etc. In general, the substrates allow optical detection and preferably do not appreciably fluoresce. See WO 00/55627.


[0151] Generally the substrate is planar, although as will be appreciated by those in the art, other configurations of substrates may be used as well. For example, the probes may be placed on the inside surface of a tube, for flow-through sample analysis to minimize sample volume. Similarly, the substrate may be flexible, such as a flexible foam, including closed cell foams made of particular plastics.


[0152] In a preferred embodiment, the surface of the biochip and the probe may be derivatized with chemical functional groups for subsequent attachment of the two. Thus, e.g., the biochip is derivatized with a chemical functional group including, but not limited to, amino groups, carboxy groups, oxo groups, and thiol groups, with amino groups being particularly preferred. Using these functional groups, the probes can be attached using functional groups on the probes. For example, nucleic acids containing amino groups can be attached to surfaces comprising amino groups, e.g., using available linkers, homo-or hetero-bifunctional linkers as are well known (see 1994 Pierce Chemical Company catalog, technical section on cross-linkers, pages 155-200). In addition, in some cases, additional linkers, such as alkyl groups (including substituted and heteroalkyl groups) may be used.


[0153] In this embodiment, oligonucleotides are synthesized as is known in the art, and then attached to the surface of the solid support. Either the 5′ or 3′ terminus may be attached to the solid support, or attachment may be via an internal nucleoside. In another embodiment, the immobilization to the solid support may be very strong, yet non-covalent. For example, biotinylated oligonucleotides can be made, which bind to surfaces covalently coated with streptavidin, resulting in attachment.


[0154] In another embodiment, the immobilization to the solid support may be very strong, yet non-covalent. For example, biotinylated oligonucleotides can be made, which bind to surfaces covalently coated with streptavidin, resulting in attachment.


[0155] Alternatively, the oligonucleotides may be synthesized on the surface, as is known in the art. For example, photoactivation techniques utilizing photopolymerization compounds and techniques are used. In a preferred embodiment, the nucleic acids can be synthesized in situ, using well known photolithographic techniques, such as those described in WO 95/25116; WO 95/35505; U.S. Pat. Nos. 5,700,637 and 5,445,934; and references cited within, all of which are expressly incorporated by reference; these methods of attachment form the basis of the Affymetrix GeneChip™ technology. Other oligonucleotide synthetic techniques may be applied.


[0156] Often, amplification-based assays are performed to measure the expression level of Hepatitis C infection-associated sequences. These assays are typically performed in conjunction with reverse transcription. In such assays, a Hepatitis C infection-associated nucleic acid sequence acts as a template in an amplification reaction (e.g., Polymerase Chain Reaction, or PCR). In a quantitative amplification, the amount of amplification product will be proportional to the amount of template in the original sample. Comparison to appropriate controls provides a measure of the amount of Hepatitis C infection-associated RNA. Methods of quantitative amplification are well known to those of skill in the art. Detailed protocols for quantitative PCR are provided, e.g., in Innis, et al. (1990) PCR Protocols: A Guide to Methods and Applications Academic Press.


[0157] In some embodiments, a TaqMan based assay is used to measure expression. TaqMan based assays use a fluorogenic oligonucleotide probe that contains a 5′ fluorescent dye and a 3′ quenching agent. The probe hybridizes to a PCR product, but cannot itself be extended due to a blocking agent at the 3′ end. When the PCR product is amplified in subsequent cycles, the 5′ nuclease activity of the polymerase, e.g., AmpliTaq, results in the cleavage of the TaqMan probe. This cleavage separates the 5′ fluorescent dye and the 3′ quenching agent, thereby resulting in an increase in fluorescence as a function of amplification (see, e.g., literature provided by Perkin-Elmer, e.g., www2.perkin-elmer.com).


[0158] Other suitable amplification methods include, but are not limited to, ligase chain reaction (LCR) (see Wu and Wallace (1989) Genomics 4:560-569, Landegren, et al. (1988) Science 241:1077-1080, and Barringer, et al. (1990) Gene 89:117-122), transcription amplification (Kwoh, et al. (1989) Proc. Nat'l Acad. Sci. USA 86:1173-1177), self-sustained sequence replication (Guatelli, et al. (1990) Proc. Nat'l Acad. Sci. USA 87:1874-1878), dot PCR, linker adapter PCR, etc.


[0159] Expression of Hepatitis C Infection Proteins from Nucleic Acids


[0160] In a preferred embodiment, Hepatitis C infection nucleic acids, e.g., encoding Hepatitis C infection proteins are used to make a variety of expression vectors to express Hepatitis C infection proteins which can then be used in screening assays, as described below. Expression vectors and recombinant DNA technology are well known (see, e.g., Ausubel, supra, and Fernandez and Hoeffler (eds. 1999) Gene Expression Systems Academic Press) and are used to express proteins. The expression vectors may be self-replicating extrachromosomal vectors or vectors which integrate into a host genome. Generally, these expression vectors include transcriptional and translational regulatory nucleic acid operably linked to the nucleic acid encoding the Hepatitis C infection protein. The term “control sequences” refers to DNA sequences used for the expression of an operably linked coding sequence in a particular host organism. Control sequences that are suitable for prokaryotes, e.g., include a promoter, optionally an operator sequence, and a ribosome binding site. Eukaryotic cells are known to utilize promoters, polyadenylation signals, and enhancers.


[0161] Nucleic acid is “operably linked” when it is placed into a functional relationship with another nucleic acid sequence. For example, DNA for a presequence or secretory leader is operably linked to DNA for a polypeptide if it is expressed as a preprotein that participates in the secretion of the polypeptide; a promoter or enhancer is operably linked to a coding sequence if it affects the transcription of the sequence; or a ribosome binding site is operably linked to a coding sequence if it is positioned so as to facilitate translation. Generally, “operably linked” means that the DNA sequences being linked are contiguous, and, in the case of a secretory leader, contiguous and in reading phase. However, enhancers do not have to be contiguous. Linking is typically accomplished by ligation at convenient restriction sites. If such sites do not exist, synthetic oligonucleotide adaptors or linkers are used in accordance with conventional practice. Transcriptional and translational regulatory nucleic acid will generally be appropriate to the host cell used to express the Hepatitis C infection protein. Numerous types of appropriate expression vectors, and suitable regulatory sequences are known in the art for a variety of host cells.


[0162] In general, transcriptional and translational regulatory sequences may include, but are not limited to, promoter sequences, ribosomal binding sites, transcriptional start and stop sequences, translational start and stop sequences, and enhancer or activator sequences. In a preferred embodiment, the regulatory sequences include a promoter and transcriptional start and stop sequences.


[0163] Promoter sequences encode either constitutive or inducible promoters. The promoters may be either naturally occurring promoters or hybrid promoters. Hybrid promoters, which combine elements of more than one promoter, are also known in the art, and are useful in the present invention.


[0164] In addition, an expression vector may comprise additional elements. For example, the expression vector may have two replication systems, thus allowing it to be maintained in two organisms, e.g., in mammalian or insect cells for expression and in a prokaryotic host for cloning and amplification. Furthermore, for integrating expression vectors, the expression vector contains at least one sequence homologous to the host cell genome, and preferably two homologous sequences which flank the expression construct. The integrating vector may be directed to a specific locus in the host cell by selecting the appropriate homologous sequence for inclusion in the vector. Constructs for integrating vectors are available. See, e.g., Fernandez and Hoeffler, supra; and Kitamura, et al. (1995) Proc. Nat'l Acad. Sci. USA 92:9146-9150.


[0165] In addition, in a preferred embodiment, the expression vector contains a selectable marker gene to allow the selection of transformed host cells. Selection genes are well known in the art and will vary with the host cell used.


[0166] The Hepatitis C infection proteins of the present invention may be produced by culturing a host cell transformed with an expression vector containing nucleic acid encoding a Hepatitis C infection protein, under the appropriate conditions to induce or cause expression of the Hepatitis C infection protein. Conditions appropriate for Hepatitis C infection protein expression will vary with the choice of the expression vector and the host cell, and will be easily ascertained by one skilled in the art through routine experimentation or optimization. For example, the use of constitutive promoters in the expression vector will require optimizing the growth and proliferation of the host cell, while the use of an inducible promoter requires the appropriate growth conditions for induction. In addition, in some embodiments, the timing of the harvest is important. For example, the baculoviral systems used in insect cell expression are lytic viruses, and thus harvest time selection can be crucial for product yield. Alternatively, cells may be identified which naturally express relevant genes at high levels.


[0167] Appropriate host cells include yeast, bacteria, archaebacteria, fungi, and insect and animal cells, including mammalian cells. Of particular interest are Saccharomyces cerevisiae and other yeasts, E. coli, Bacillus subtilis, Sf9 cells, C 129 cells, 293 cells, Neurospora, BHK, CHO, COS, HeLa cells, HUVEC (human umbilical vein endothelial cells), THP1 cells (a macrophage cell line), and various other human cells and cell lines.


[0168] In a preferred embodiment, the Hepatitis C infection proteins are expressed in mammalian cells. Mammalian expression systems are also known in the art, and include retroviral and adenoviral systems. One expression vector system is a retroviral vector system such as is generally described in PCT/US97/01019 and PCT/US97/01048, both of which are hereby expressly incorporated by reference. Of particular use as mammalian promoters are the promoters from mammalian viral genes, since the viral genes are often highly expressed and have a broad host range. Examples include the SV40 early promoter, mouse mammary tumor virus LTR promoter, adenovirus major late promoter, herpes simplex virus promoter, and the CMV promoter (see, e.g., Fernandez and Hoeffler, supra). Typically, transcription termination and polyadenylation sequences recognized by mammalian cells are regulatory regions located 3′ to the translation stop codon and thus, together with the promoter elements, flank the coding sequence. Examples of transcription terminator and polyadenylation signals include those derived form SV40.


[0169] Methods of introducing exogenous nucleic acid into mammalian hosts, as well as other hosts, is well known in the art, and will vary with the host cell used. Techniques include dextran-mediated transfection, calcium phosphate precipitation, polybrene mediated transfection, protoplast fusion, electroporation, viral infection, encapsulation of the polynucleotide(s) in liposomes, and direct microinjection of the DNA into nuclei.


[0170] In a preferred embodiment, Hepatitis C infection proteins are expressed in bacterial systems. Promoters from bacteriophage may also be used. In addition, synthetic promoters and hybrid promoters are also useful; e.g., the tac promoter is a hybrid of the trp and lac promoter sequences. Furthermore, a bacterial promoter can include naturally occurring promoters of non-bacterial origin that have the ability to bind bacterial RNA polymerase and initiate transcription. In addition to a functioning promoter sequence, an efficient ribosome binding site is desirable. The expression vector may also include a signal peptide sequence that provides for secretion of the Hepatitis C infection protein in bacteria. The protein is either secreted into the growth media (gram-positive bacteria) or into the periplasmic space, located between the inner and outer membrane of the cell (gram-negative bacteria). The bacterial expression vector may also include a selectable marker gene to allow for the selection of bacterial strains that have been transformed. Suitable selection genes include genes which render the bacteria resistant to drugs, e.g., ampicillin, chloramphenicol, erythromycin, kanamycin, neomycin, and tetracycline. Selectable markers also include biosynthetic genes, such as those in the histidine, tryptophan, and leucine biosynthetic pathways. These components are assembled into expression vectors. Expression vectors for bacteria are well known in the art, and include vectors for Bacillus subtilis, E. coli, Streptococcus cremoris, and Streptococcus lividans, among others (e.g., Fernandez and Hoeffler, supra). The bacterial expression vectors are transformed into bacterial host cells using techniques such as calcium chloride treatment, electroporation, and others.


[0171] In one embodiment, Hepatitis C infection proteins are produced in insect cells, e.g., expression vectors for the transformation of insect cells, and, in particular, baculovirus-based expression vectors.


[0172] In a preferred embodiment, Hepatitis C infection protein is produced in yeast cells. Yeast expression systems include expression vectors for Saccharomyces cerevisiae, Candida albicans and C. maltosa, Hansenula polymorpha, Kluyveromyces fragilis and K. lactis, Pichia guillerimondii and P. pastoris, Schizosaccharomyces pombe, and Yarrowia lipolytica.


[0173] The Hepatitis C infection protein may also be made as a fusion protein, e.g., for the creation of monoclonal antibodies, if the desired epitope is small, the Hepatitis C infection protein may be fused to a carrier protein to form an immunogen. Alternatively, the Hepatitis C infection protein may be made as a fusion protein to increase expression, or for other reasons. For example, when the Hepatitis C infection protein is a Hepatitis C infection peptide, the nucleic acid encoding the peptide may be linked to other nucleic acid for expression purposes. Fusion with detection epitope tags can be made, e.g., with FLAG, His6, myc, HA, etc.


[0174] In a preferred embodiment, the Hepatitis C infection protein is purified or isolated after expression. Hepatitis C infection proteins may be isolated or purified in a variety of ways depending on what other components are present in the sample. Standard purification methods include electrophoretic, molecular, immunological, and chromatographic techniques, including ion exchange, hydrophobic, affinity, reverse-phase HPLC chromatography, affinity label, and chromatofocusing. For example, the Hepatitis C infection protein may be purified using a standard anti-Hepatitis C infection protein antibody column. Ultrafiltration and diafiltration techniques, in conjunction with protein concentration, are also useful. For general guidance in suitable purification techniques, see, e.g., Scopes (1993) Protein Purification Springer-Verlag, NY. The degree of purification necessary will vary depending on the use of the Hepatitis C infection protein. In some instances no purification will be necessary.


[0175] Once expressed and purified if necessary, the Hepatitis C infection proteins and nucleic acids are useful in a number of applications. They may be used as immunoselection reagents, as vaccine reagents, as screening agents, etc.



Variants of Hepatitis C Infection Proteins

[0176] In one embodiment, the proteins expressed as a result of Hepatitis C infection are derivative or variant proteins as compared to the wild-type sequence. That is, as outlined more fully below, the derivative Hepatitis C infection peptide will often contain at least one amino acid substitution, deletion or insertion, with amino acid substitutions being particularly preferred. The amino acid substitution, insertion or deletion may occur at virtually any residue within the Hepatitis C infection peptide.


[0177] Also included within one embodiment of Hepatitis C infection proteins of the present invention are amino acid sequence variants. These variants typically fall into one or more of three classes: substitutional, insertional or deletional variants. These variants ordinarily are prepared by site specific mutagenesis of nucleotides in the DNA encoding the Hepatitis C infection protein, using cassette or PCR mutagenesis or other techniques well known in the art, to produce DNA encoding the variant, and thereafter expressing the DNA in recombinant cell culture as outlined above. However, variant Hepatitis C infection protein fragments having up to about 100-150 residues may be prepared by in vitro synthesis using established techniques. Amino acid sequence variants are characterized by the predetermined nature of the variation, a feature that sets them apart from naturally occurring allelic or interspecies variation of the Hepatitis C infection protein amino acid sequence. The variants typically exhibit the same qualitative biological activity as the naturally occurring analogue, although variants can also be selected which have modified characteristics as will be more fully outlined below.


[0178] While the site or region for introducing an amino acid sequence variation is generally predetermined, the mutation per se need not be predetermined. For example, in order to optimize the performance of a mutation at a given site, random mutagenesis may be conducted at the target codon or region and the expressed Hepatitis C infection variants screened for the optimal combination of desired activity. Techniques for making substitution mutations at predetermined sites in DNA having a known sequence are well known, e.g., M13 primer mutagenesis and PCR mutagenesis. Screening of the mutants is done using assays of Hepatitis C infection protein activities.


[0179] Amino acid substitutions are typically of single residues; insertions usually will be on the order of from about 1-20 amino acids, although considerably larger insertions may be tolerated. Deletions range from about 1-20 residues, although in some cases deletions may be much larger.


[0180] Substitutions, deletions, insertions or combinations thereof may be used to arrive at a final derivative. Generally these changes are done on a few amino acids to minimize the alteration of the molecule. However, larger changes may be tolerated in certain circumstances. When small alterations in the characteristics of the Hepatitis C infection protein are desired, substitutions are generally made in accordance with the amino acid substitution relationships provided in the definition section.


[0181] The variants typically exhibit the same qualitative biological activity and will elicit the same immune response as the naturally-occurring analog, although variants also are selected to modify the characteristics of the Hepatitis C infection proteins as needed. Alternatively, the variant may be designed such that the biological activity of the Hepatitis C infection protein is altered. For example, glycosylation sites may be altered or removed.


[0182] Substantial changes in function or immunological identity are made by selecting substitutions that are less conservative than those described above. For example, substitutions may be made which more significantly affect: the structure of the polypeptide backbone in the area of the alteration, e.g., the alpha-helical or beta-sheet structure; the charge or hydrophobicity of the molecule at the target site; or the bulk of the side chain. The substitutions which in general are expected to produce the greatest changes in the polypeptide's properties are those in which (a) a hydrophilic sidechain, e.g., serine or threonine, is substituted for (or by) a hydrophobic sidechain, e.g., leucine, isoleucine, phenylalanine, valine, or alanine; (b) a cysteine or proline is substituted for (or by) another residue; (c) a residue having an electropositive side chain, e.g., lysine, arginine, or histidine, is substituted for (or by) an electronegative side chain, e.g., glutamic or aspartic acid; (d) a residue having a bulky side chain, e.g., phenylalanine, is substituted for (or by) one not having a side chain, e.g., glycine; or (e) a proline residue is incorporated or substituted, which changes the degree of rotational freedom of the peptidyl bond.


[0183] Covalent modifications of Hepatitis C infection polypeptides are included within the scope of this invention. One type of covalent modification includes reacting targeted amino acid residues of a Hepatitis C infection polypeptide with an organic derivatizing agent that is capable of reacting with selected side chains or the N-or C-terminal residues of a Hepatitis C infection polypeptide. Derivatization with bifunctional agents is useful, e.g., for crosslinking Hepatitis C infection polypeptides to a water-insoluble support matrix or surface for use in the method for purifying anti-Hepatitis C infection polypeptide antibodies or screening assays, as is more fully described below. Commonly used crosslinking agents include, e.g., 1,1-bis(diazoacetyl)-2-phenylethane, glutaraldehyde, N-hydroxysuccinimide esters, e.g., esters with 4-azidosalicylic acid, homobifunctional imidoesters, including disuccinimidyl esters such as 3,3′-dithiobis(succinimidylpropionate), bifunctional maleimides such as bis-N-maleimido-1,8-octane and agents such as methyl-3-((p-azidophenyl)dithio)propioimidate.


[0184] Other modifications include deamidation of glutaminyl and asparaginyl residues to the corresponding glutamyl and aspartyl residues, respectively, hydroxylation of proline and lysine, phosphorylation of hydroxyl groups of serinyl, threonyl or tyrosyl residues, methylation of the amino groups of the lysine, arginine, and histidine side chains (e.g., pp. 79-86, Creighton (1992) Proteins: Structure and Molecular Properties Freeman), acetylation of the N-terminal amine, and amidation of a C-terminal carboxyl group.


[0185] Another type of covalent modification of the Hepatitis C infection polypeptide included within the scope of this invention comprises altering the native glycosylation pattern of the polypeptide. “Altering the native glycosylation pattern” is intended for purposes herein to mean deleting one or more carbohydrate moieties found in native sequence Hepatitis C infection polypeptide, and/or adding one or more glycosylation sites that are not present in the native sequence Hepatitis C infection polypeptide. Glycosylation patterns can be altered in many ways. Different cell types may be used to express Hepatitis C infection-associated sequences to exhibit different glycosylation patterns.


[0186] Addition of glycosylation sites to Hepatitis C infection polypeptides may also be accomplished by altering the amino acid sequence thereof. The alteration may be made, e.g., by the addition of, or substitution by, one or more serine or threonine residues to the native sequence Hepatitis C infection polypeptide (for O-linked glycosylation sites). The Hepatitis C infection amino acid sequence may optionally be altered through changes at the DNA level, particularly by mutating the DNA encoding the Hepatitis C infection polypeptide at preselected bases such that codons are generated that will translate into the desired amino acids.


[0187] Another means of increasing the number of carbohydrate moieties on the Hepatitis C infection polypeptide is by chemical or enzymatic coupling of glycosides to the polypeptide. See, e.g., WO 87/05330; and pp. 259-306 in Aplin and Wriston (1981) CRC Crit. Rev.


[0188] Biochem.


[0189] Removal of carbohydrate moieties present on the Hepatitis C infection polypeptide may be accomplished chemically or enzymatically or by mutational substitution of codons encoding for amino acid residues that serve as targets for glycosylation. Chemical deglycosylation techniques are applicable. See, e.g., Sojar and Bahl (1987) Arch. Biochem. Biophys. 259:52-57; and Edge, et al. (1981) Anal. Biochem. 118:131-137. Enzymatic cleavage of carbohydrate moieties on polypeptides can be achieved by the use of a variety of endo- and exo-glycosidases. See, e.g., Thotakura, et al. (1987) Meth. Enzymol. 138:350-359.


[0190] Another type of covalent modification of Hepatitis C infection comprises linking the Hepatitis C infection polypeptide to one of a variety of nonproteinaceous polymers, e.g., polyethylene glycol, polypropylene glycol, or polyoxyalkylenes, in the manner set forth in U.S. Pat. Nos. 4,640,835; 4,496,689; 4,301,144; 4,670,417; 4,791,192; or 4,179,337.


[0191] Hepatitis C infection polypeptides of the present invention may also be modified in a way to form chimeric molecules comprising a Hepatitis C infection polypeptide fused to another heterologous polypeptide or amino acid sequence. In one embodiment, such a chimeric molecule comprises a fusion of a Hepatitis C infection polypeptide with a tag polypeptide which provides an epitope to which an anti-tag antibody can selectively bind. The epitope tag is generally placed at the amino-or carboxyl-terminus of the Hepatitis C infection polypeptide. The presence of such epitope-tagged forms of a Hepatitis C infection polypeptide can be detected using an antibody against the tag polypeptide. Also, provision of the epitope tag enables the Hepatitis C infection polypeptide to be readily purified by affinity purification using an anti-tag antibody or another type of affinity matrix that binds to the epitope tag. In an alternative embodiment, the chimeric molecule may comprise a fusion of a Hepatitis C infection polypeptide with an immunoglobulin or a particular region of an immunoglobulin. For a bivalent form of the chimeric molecule, such a fusion could be to the Fe region of an IgG molecule.


[0192] Various tag polypeptides and their respective antibodies are available. Examples include poly-histidine (poly-his) or poly-histidine-glycine (poly-his-gly) tags; HIS6, and metal chelation tags, the flu HA tag polypeptide and its antibody 12CA5 (Field, et al. (1988) Mol. Cell. Biol. 8:2159-2165); the c-myc tag and the 8F9, 3C7, 6E10, G4, B7, and 9E10 antibodies thereto (Evan, et al. (1985) Mol. Cell. Biol. 5:3610-3616); and the Herpes Simplex virus glycoprotein D (gD) tag and its antibody (Paborsky, et al. (1990) Protein Engineering 3:547-553). Other tag polypeptides include the Flag-peptide (Hopp, et al. (1988) BioTechnology 6:1204-1210); the KT3 epitope peptide (Martin, et al. (1992) Science 255:192-194); tubulin epitope peptide (Skinner, et al. (1991) J. Biol. Chem. 266:15163-15166); and the T7 gene 10 protein peptide tag (Lutz-Freyermuth, et al. (1990) Proc. Nat'l Acad. Sci. USA 87:6393-6397).


[0193] Also included are other Hepatitis C infection proteins of the family, and Hepatitis C infection proteins from other organisms, which are cloned and expressed as outlined below. Thus, probe or degenerate polymerase chain reaction (PCR) primer sequences may be used to find other related Hepatitis C infection proteins from humans or other organisms. As will be appreciated by those in the art, particularly useful probe and/or PCR primer sequences include the unique areas of the Hepatitis C infection nucleic acid sequence. As is generally known in the art, preferred PCR primers are from about 15-35 nucleotides in length, with from about 20-30 being preferred, and may contain inosine as needed. The conditions for the PCR reaction are well known. See, e.g., Innis, PCR Protocols, supra.


[0194] In addition, as is outlined herein, Hepatitis C proteins can be made that are longer than those encoded by the nucleic acids of the Tables, e.g., by the elucidation of extended sequences, the addition of epitope or purification tags, the addition of other fusion sequences, etc.


[0195] Hepatitis C proteins may also be identified as being encoded by Hepatitis C nucleic acids. Thus, Heptatitis C proteins are encoded by nucleic acids that will hybridize to the sequences of the sequence listings, or their complements, as outlined herein.


[0196] Antibodies to Hepatitis C Infection Proteins


[0197] In a preferred embodiment, when the Hepatitis C infection protein is to be used to generate antibodies, e.g., for immunotherapy or immunodiagnosis, the Hepatitis C infection protein should share at least one epitope or determinant with the full length protein. By “epitope” or “determinant” herein is typically meant a portion of a protein which will generate and/or bind an antibody or T-cell receptor in the context of MHC. Thus, in most instances, antibodies made to a smaller Hepatitis C infection protein will be able to bind to the full-length protein, particularly linear epitopes. In a preferred embodiment, the epitope is unique; that is, antibodies generated to a unique epitope show little or no cross-reactivity.


[0198] Methods of preparing polyclonal antibodies are known to the skilled artisan (e.g., Coligan, supra; and Harlow and Lane, supra). Polyclonal antibodies can be raised in a mammal, e.g., by one or more injections of an immunizing agent and, if desired, an adjuvant. Typically, the immunizing agent and/or adjuvant will be injected in the mammal by multiple subcutaneous or intraperitoneal injections. The immunizing agent may include a protein encoded by a nucleic acid of the figures or fragment thereof or a fusion protein thereof. It may be useful to conjugate the immunizing agent to a protein known to be immunogenic in the mammal being immunized. Examples of such immunogenic proteins include but are not limited to keyhole limpet hemocyanin, serum albumin, bovine thyroglobulin, and soybean trypsin inhibitor. Examples of adjuvants which may be employed include Freund's complete adjuvant and MPL-TDM adjuvant (monophosphoryl Lipid A, synthetic trehalose dicorynomycolate). The immunization protocol may be selected by one skilled in the art without undue experimentation.


[0199] The antibodies may, alternatively, be monoclonal antibodies. Monoclonal antibodies may be prepared using hybridoma methods, such as those described by Kohler and Milstein (1975) Nature 256:495-497. In a hybridoma method, a mouse, hamster, or other appropriate host animal, is typically immunized with an immunizing agent to elicit lymphocytes that produce or are capable of producing antibodies that will specifically bind to the immunizing agent. Alternatively, the lymphocytes may be immunized in vitro. The immunizing agent will typically include a polypeptide encoded by a nucleic acid of Tables 1A-15 or fragment thereof, or a fusion protein thereof. Generally, either peripheral blood lymphocytes (“PBLs”) are used if cells of human origin are desired, or spleen cells or lymph node cells are used if non-human mammalian sources are desired. The lymphocytes are then fused with an immortalized cell line using a suitable fusing agent, such as polyethylene glycol, to form a hybridoma cell (e.g., pp. 59-103 in Goding (1986) Monoclonal Antibodies: Principles and Practice Academic Press). Immortalized cell lines are usually transformed mammalian cells, particularly myeloma cells of rodent, bovine, primate, and human origin. Usually, rat or mouse myeloma cell lines are employed. The hybridoma cells may be cultured in a suitable culture medium that preferably contains one or more substances that inhibit the growth or survival of the unfused, immortalized cells. For example, if the parental cells lack the enzyme hypoxanthine guanine phosphoribosyl transferase (HGPRT or HPRT), the culture medium for the hybridomas typically will include hypoxanthine, aminopterin, and thymidine (“HAT medium”), which substances prevent the growth of HGPRT-deficient cells.


[0200] In one embodiment, the antibodies are bispecific antibodies. Bispecific antibodies are monoclonal, preferably human or humanized, antibodies that have binding specificities for at least two different antigens or that have binding specificities for two epitopes on the same antigen. In one embodiment, one of the binding specificities is for a protein encoded by a nucleic acid Tables 1A-15 or a fragment thereof, the other one is for another antigen, and preferably for a cell-surface protein or receptor or receptor subunit, preferably one that is tumor specific. Alternatively, tetramer-type technology may create multivalent reagents.


[0201] In a preferred embodiment, the antibodies to Hepatitis C infection protein are capable of reducing or eliminating a biological function of a Hepatitis C infection protein, as is described below. That is, the addition of anti-Hepatitis C infection protein antibodies (either polyclonal or preferably monoclonal or oligoclonal) to Hepatitis C infected cells or tissues or cells and tissues secondarily affected by Hepatitis C infection, may reduce or eliminate the Hepatitis C infection and/or its secondary consequences. Generally, at least about 25% decrease in activity, growth, size, or the like is preferred, with at least about 50% being particularly preferred and about 95-100% decrease being especially preferred.


[0202] In a preferred embodiment the antibodies to the Hepatitis C infection proteins are humanized antibodies (e.g., Xenerex Biosciences, Medarex, Inc., Abgenix, Inc., Protein Design Labs, Inc.). Humanized forms of non-human (e.g., murine) antibodies are chimeric molecules of immunoglobulins, immunoglobulin chains, or fragments thereof (such as Fv, Fab, Fab′, F(ab′)2 or other antigen-binding subsequences of antibodies) which contain minimal sequence derived from non-human immunoglobulin. Humanized antibodies include human immunoglobulins (recipient antibody) in which residues from a complementary determining region (CDR) of the recipient are replaced by residues from a CDR of a non-human species (donor antibody) such as mouse, rat or rabbit having the desired specificity, affinity and capacity. In some instances, Fv framework residues of the human immunoglobulin are replaced by corresponding non-human residues. Humanized antibodies may also comprise residues which are found neither in the recipient antibody nor in the imported CDR or framework sequences. In general, a humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the CDR regions correspond to those of a non-human immunoglobulin and all or substantially all of the framework (FR) regions are those of a human immunoglobulin consensus sequence. The humanized antibody optimally also will typically comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin (Jones, et al. (1986) Nature 321:522-525; Riechmann, et al. (1988) Nature 332:323-329; and Presta (1992) Curr. Op. Struct. Biol. 2:593-596). Humanization can be essentially performed following the method of Winter and co-workers (Jones, et al. (1986) Nature 321:522-525; Riechmann, et al. (1988) Nature 332:323-327; Verhoeyen, et al. (1988) Science 239:1534-1536), by substituting rodent CDRs or CDR sequences for corresponding sequences of a human antibody. Accordingly, such humanized antibodies are chimeric antibodies (U.S. Pat. No. 4,816,567), wherein substantially less than an intact human variable domain has been substituted by corresponding sequence from a non-human species.


[0203] Human-like antibodies can also be produced using phage display libraries (Hoogenboom and Winter (1992) J. Mol. Biol. 227:381-388; Marks, et al. (1991) J. Mol. Biol. 222:581-597) or human monoclonal antibodies (e.g., p. 77, Cole, et al. in Reisfeld and Sell (1985) Monoclonal Antibodies and Cancer Therapy Liss; and Boemer, et al. (1991) J. Immunol. 147:86-95). Similarly, human antibodies can be made by introducing human immunoglobulin loci into transgenic animals, e.g., mice in which the endogenous immunoglobulin genes have been partially or completely inactivated. Upon challenge, human antibody production is observed, which closely resembles that seen in humans in nearly all respects, including gene rearrangement, assembly, and antibody repertoire. This approach is described, e.g., in U.S. Pat. Nos. 5,545,807; 5,545,806; 5,569,825; 5,625,126; 5,633,425; 5,661,016, and in the following scientific publications: Marks, et al. (1992) Bio/Technology 10:779-783; Lonberg, et al. (1994) Nature 368:856-859; Morrison (1994) Nature 368:812-13; Fishwild, et al. (1996) Nature Biotechnology 14:845-851; Neuberger (1996) Nature Biotechnology 14:826; and Lonberg and Huszar (1995) Intern. Rev. Immunol. 13:65-93.


[0204] By immunotherapy is meant treatment of Hepatitis C infection and its secondary consequences with an antibody raised against Hepatitis C infection proteins. As used herein, immunotherapy can be passive or active. Passive immunotherapy as defined herein is the passive transfer of antibody to a recipient (patient). Active immunization is the induction of antibody and/or T-cell responses in a recipient (patient). Induction of an immune response is the result of providing the recipient with an antigen to which antibodies are raised. As appreciated by one of ordinary skill in the art, the antigen may be provided by injecting a polypeptide against which antibodies are desired to be raised into a recipient, or contacting the recipient with a nucleic acid capable of expressing the antigen and under conditions for expression of the antigen, leading to an immune response.


[0205] In a preferred embodiment the Hepatitis C infection proteins against which antibodies are raised are secreted proteins as described above. Without being bound by theory, antibodies used for treatment will typically bind and prevent the secreted protein from binding to its receptor, thereby inactivating the secreted Hepatitis C infection protein, e.g., in autocrine signaling.


[0206] In another preferred embodiment, the Hepatitis C infection protein to which antibodies are raised is a transmembrane protein. Without being bound by theory, antibodies used for treatment may bind the extracellular domain of the Hepatitis C infection protein and prevent it from binding to other proteins, such as circulating ligands or cell-associated molecules. The antibody may cause down-regulation of the transmembrane Hepatitis C infection protein. As will be appreciated by one of ordinary skill in the art, the antibody may be a competitive, non-competitive or uncompetitive inhibitor of protein binding to the extracellular domain of the Hepatitis C infection protein. The antibody is also an antagonist of the Hepatitis C infection protein. Further, the antibody prevents activation of the transmembrane Hepatitis C infection protein. The antibody may also be used to target or sensitize the cell to cytotoxic agents, including, but not limited to TNF-α, TNF-β, IL-1, INF-γ and IL-2, or chemotherapeutic agents including 5FU, vinblastine, actinomycin D, cisplatin, methotrexate, and the like. In some instances the antibody belongs to a sub-type that activates serum complement when complexed with the transmembrane protein thereby mediating cytotoxicity or antigen-dependent cytotoxicity (ADCC). Thus, Hepatitis C infection and its secondary consequences is treated by administering to a patient antibodies directed against the transmembrane Hepatitis C infection protein. Antibody-labeling may activate a co-toxin, localize a toxin payload, or otherwise provide means to locally ablate cells.


[0207] In another preferred embodiment, the antibody is conjugated to an effector moiety. The effector moiety can be a labeling moiety, e.g., a radioactive or fluorescent label, or a therapeutic moiety. In one aspect the therapeutic moiety is a small molecule that modulates the activity of the Hepatitis C infection protein. In another aspect the therapeutic moiety modulates the activity of molecules associated with or in close proximity to the Hepatitis C infection protein. The therapeutic moiety may inhibit enzymatic activity such as protease or collagenase or protein kinase activity associated with Hepatitis C infection and its secondary consequences. The effector may activate an endogenous physiological or immunological response.


[0208] In a preferred embodiment, the therapeutic moiety can also be a cytotoxic agent. In this method, targeting the cytotoxic agent to tissue or cells that are either directly infected with Hepatitis C or which are affected secondarily by the Hepatitis C infection, results in a reduction in the number of afflicted cells, thereby reducing symptoms associated with Hepatitis C infection and its secondary consequences. Cytotoxic agents are numerous and varied and include, but are not limited to, cytotoxic drugs or toxins or active fragments of such toxins. Suitable toxins and their corresponding fragments include diphtheria A chain, exotoxin A chain, ricin A chain, abrin A chain, curcin, crotin, saporin, maytansins, aurostatin, phenomycin, enomycin, and the like. Cytotoxic agents also include radiochemicals made by conjugating radioisotopes to antibodies raised against Hepatitis C infection proteins, or binding of a radionuclide to a chelating agent that has been covalently attached to the antibody. Targeting the therapeutic moiety to transmembrane Hepatitis C infection proteins not only serves to increase the local concentration of therapeutic moiety in the afflicted area, but also serves to reduce deleterious side effects that may be associated with the therapeutic moiety.


[0209] In another preferred embodiment, the Hepatitis C infection protein against which the antibodies are raised is an intracellular protein. In this case, the antibody may be conjugated to a protein which facilitates entry into the cell. In one case, the antibody enters the cell by endocytosis. In another embodiment, a nucleic acid encoding the antibody is administered to the individual or cell. Moreover, wherein the Hepatitis C infection protein can be targeted within a cell, e.g., the nucleus, an antibody thereto contains a signal for that target localization, e.g., a nuclear localization signal.


[0210] The antibodies to Hepatitis C afflicted cells and tissues of the invention specifically bind to Hepatitis C infection proteins. By “specifically bind” herein is meant that the antibodies bind to the protein with a Kd of at least about 0.1 mM, more usually at least about 1 μM, preferably at least about 0.1 μM or better, and most preferably, 0.01 μM or better. Selectivity of binding is also important.


[0211] Detection of Hepatitis C Infection Sequences for Diagnostic and Therapeutic Applications


[0212] In one aspect, the RNA expression levels of genes are determined for different cellular states in the Hepatitis C infection phenotype. Expression levels of genes in tissue from uninfected individuals and in Hepatitis C infected or affected tissue are evaluated to provide expression profiles. An expression profile of a particular cell state or point of development is essentially a “fingerprint” of the state. While two states may have any particular gene similarly expressed, the evaluation of a number of genes simultaneously allows the generation of a gene expression profile that is reflective of the state of the cell. By comparing expression profiles of cells in different states, information regarding which genes are important (including both up- and down-regulation of genes) in each of these states is obtained. Then, diagnosis may be performed or confirmed to determine whether a tissue sample has the gene expression profile of normal or cancerous tissue. This will provide for molecular diagnosis of related conditions.


[0213] “Differential expression,” or grammatical equivalents as used herein, refers to qualitative or quantitative differences in the temporal and/or cellular gene expression patterns within and among cells and tissue. Thus, a differentially expressed gene can qualitatively have its expression altered, including an activation or inactivation, in, e.g., normal versus Hepatitis C infected tissue. Genes may be turned on or turned off in a particular state, relative to another state thus permitting comparison of two or more states. A qualitatively regulated gene will exhibit an expression pattern within a state or cell type which is detectable by standard techniques. Some genes will be expressed in one state or cell type, but not in both. Alternatively, the difference in expression may be quantitative, e.g., in that expression is increased or decreased; e.g., gene expression is either upregulated, resulting in an increased amount of transcript, or downregulated, resulting in a decreased amount of transcript. The degree to which expression differs need only be large enough to quantify via standard characterization techniques as outlined below, such as by use of Affymetrix GeneChip™ expression arrays. See, Lockhart (1996) Nature Biotechnology 14:1675-1680. Other techniques include, but are not limited to, quantitative reverse transcriptase PCR, northern analysis, and RNase protection. As outlined above, preferably the change in expression (e.g., upregulation or downregulation) is at least about 50%, more preferably at least about 100%, more preferably at least about 150%, more preferably at least about 200%, with from 300 to at least 1000% being especially preferred.


[0214] Evaluation may be at the gene transcript, or the protein level. The amount of gene expression may be monitored using nucleic acid probes to the DNA or RNA equivalent of the gene transcript, and the quantification of gene expression levels, or, alternatively, the final gene product itself (protein) can be monitored, e.g., with antibodies to the Hepatitis C infection protein and standard immunoassays (ELISAs, etc.) or other techniques, including mass spectroscopy assays, 2D gel electrophoresis assays, etc. Proteins corresponding to Hepatitis C infection genes, e.g., those identified as being important in a Hepatitis C infection phenotype, can be evaluated in a diagnostic test for Hepatitis C infection and/or its secondary consequences, and certainly subsetting into responsive or non-responsive to specific treatment. In a preferred embodiment, gene expression monitoring is performed simultaneously on a number of genes. Multiple protein expression monitoring can be performed as well. Similarly, these assays may be performed on an individual basis as well.


[0215] In this embodiment, the Hepatitis C infection nucleic acid probes are attached to biochips as outlined herein for the detection and quantification of Hepatitis C infection sequences in a particular cell. The assays are further described below in the example. PCR techniques can be used to provide greater sensitivity.


[0216] In a preferred embodiment nucleic acids encoding the Hepatitis C infection protein are detected. Although DNA or RNA encoding the Hepatitis C infection protein may be detected, of particular interest are methods wherein an mRNA encoding a Hepatitis C infection protein is detected. Probes to detect mRNA can be a nucleotide/deoxynucleotide probe that is complementary to and hybridizes with the mRNA and includes, but is not limited to, oligonucleotides, cDNA or RNA. Probes also should contain a detectable label, as defined herein. In one method the mRNA is detected after immobilizing the nucleic acid to be examined on a solid support such as nylon membranes and hybridizing the probe with the sample. Following washing to remove non-specifically bound probe, the label is detected. In another method detection of the mRNA is performed in situ. In this method permeabilized cells or tissue samples are contacted with a detectably labeled nucleic acid probe for sufficient time to allow the probe to hybridize with target mRNA. Following washing to remove the non-specifically bound probe, the label is detected. For example a digoxygenin labeled riboprobe (RNA probe) that is complementary to the mRNA encoding a Hepatitis C infection protein is detected by binding the digoxygenin with an anti-digoxygenin secondary antibody and developed with nitro blue tetrazolium and 5-bromo-4-chloro-3-indoyl phosphate.


[0217] In a preferred embodiment, various proteins from the three classes of proteins as described herein (secreted, transmembrane or intracellular proteins) are used in diagnostic assays. The Hepatitis C infection proteins, antibodies, nucleic acids, modified proteins, and cells containing Hepatitis C infection sequences are used in diagnostic assays. This can be performed on an individual gene or corresponding polypeptide level. In a preferred embodiment, the expression profiles are used, preferably in conjunction with high throughput screening techniques to allow monitoring for expression profile genes and/or corresponding polypeptides.


[0218] As described and defined herein, Hepatitis C infection proteins, including intracellular, transmembrane, or secreted proteins, find use as markers of Hepatitis C infection or treatment response. Detection of these proteins in putative Hepatitis C infected tissue as well as in tissues that are affected secondarily by Hepatitis C infection, allows for detection or diagnosis of Hepatitis C infection and/or its secondary consequences. In one embodiment, antibodies are used to detect Hepatitis C infection proteins. A preferred method separates proteins from a sample by electrophoresis on a gel (typically a denaturing and reducing protein gel, but may be another type of gel, including isoelectric focusing gels and the like). Following separation of proteins, the Hepatitis C infection protein is detected, e.g., by immunoblotting with antibodies raised against the Hepatitis C infection protein. Methods of immunoblotting are well known to those of ordinary skill in the art.


[0219] In another preferred method, antibodies to the Hepatitis C infection protein find use in in situ imaging techniques, e.g., in histology (e.g., Asai, et al. (eds. 1993) Methods in Cell Biology: Antibodies in Cell Biology (vol. 37) Academic Press). In this method cells are contacted with from one to many antibodies to the Hepatitis C infection protein(s). Following washing to remove non-specific antibody binding, the presence of the antibody or antibodies is detected. In one embodiment the antibody is detected by incubating with a secondary antibody that contains a detectable label. In another method the primary antibody to the Hepatitis C infection protein(s) contains a detectable label, e.g., an enzyme marker that can act on a substrate. In another preferred embodiment each of multiple primary antibodies contains a distinct and detectable label. This method finds particular use in simultaneous screening for a plurality of Hepatitis C infection proteins. Many other histological and/or imaging techniques are also provided by the invention.


[0220] In a preferred embodiment the label is detected in a fluorometer which has the ability to detect and distinguish emissions of different wavelengths. In addition, a fluorescence activated cell sorter (FACS) can be used in the method.


[0221] In another preferred embodiment, antibodies find use in diagnosing Hepatitis C infection from blood, urine, sputum, serum, plasma, stool, and other samples. Such samples, therefore, are useful as samples to be probed or tested for the presence of Hepatitis C infection proteins. Antibodies can be used to detect a Hepatitis C infection protein by previously described immunoassay techniques including ELISA, immunoblotting (western blotting), immunoprecipitation, BIACORE technology and the like. Alternatively, the presence of antibodies may indicate an immune response against an endogenous infection.


[0222] In a preferred embodiment, in situ hybridization of labeled Hepatitis C infection nucleic acid probes to tissue arrays is done. For example, arrays of tissue samples, including Hepatitis C infection tissue and/or normal tissue, are made. In situ hybridization (see, e.g., Ausubel, supra) is then performed. When comparing the fingerprints between an individual and a standard, the skilled artisan can make a diagnosis, a prognosis, or a prediction based on the findings. It is further understood that the genes which indicate the diagnosis may differ from those which indicate the prognosis and molecular profiling of the condition of the cells may lead to distinctions between responsive or refractory conditions or may be predictive of outcomes.


[0223] In a preferred embodiment, the Hepatitis C infection proteins, antibodies, nucleic acids, modified proteins, and cells containing sequences associated with Hepatitis C infection and/or its secondary consequences are used in prognosis assays. As above, gene expression profiles can be generated that correlate to Hepatitis C infection and/or its secondary consequences, in terms of long term prognosis. Again, this may be done on either a protein or gene level, with the use of genes being preferred. As above, Hepatitis C infection probes may be attached to biochips for the detection and quantification of Hepatitis C infection sequences in a tissue or patient. The assays proceed as outlined above for diagnosis. PCR methods may provide more sensitive and accurate quantification.


[0224] Assays for Therapeutic Compounds


[0225] In a preferred embodiment members of the proteins, nucleic acids, and antibodies as described herein are used in drug screening assays. The Hepatitis C infection proteins, antibodies, nucleic acids, modified proteins, and cells containing Hepatitis C infection sequences are used in drug screening assays or by evaluating the effect of drug candidates on a “gene expression profile” or expression profile of polypeptides. In a preferred embodiment, the expression profiles are used, preferably in conjunction with high throughput screening techniques to allow monitoring for expression profile genes after treatment with a candidate agent. See, e.g., Zlokarnik, et al. (1998) Science 279:84-88; and Heid (1996) Genome Res. 6:986-994.


[0226] In a preferred embodiment, the Hepatitis C infection proteins, antibodies, nucleic acids, modified proteins, and cells containing the native or modified Hepatitis C infection proteins are used in screening assays. That is, the present invention provides novel methods for screening for compositions which modulate the Hepatitis C infection phenotype or an identified physiological function of a Hepatitis C infection protein. As above, this can be done on an individual gene level or by evaluating the effect of drug candidates on a “gene expression profile”. In a preferred embodiment, the expression profiles are used, preferably in conjunction with high throughput screening techniques to allow monitoring for expression profile genes after treatment with a candidate agent, see Zlokarnik, supra.


[0227] Having identified the differentially expressed genes herein, a variety of assays may be executed. In a preferred embodiment, assays may be run on an individual gene or protein level. That is, having identified a particular gene as up regulated during Hepatitis C infection, test compounds can be screened for the ability to modulate gene expression or for binding to the Hepatitis C infection protein. “Modulation” thus includes both an increase and a decrease in gene expression. The preferred amount of modulation will depend on the original change of the gene expression in normal versus tissue experiencing Hepatitis C infection and its secondary consequences, with changes of at least about 10%, preferably about 50%, more preferably about 100-300%, and in some embodiments about 300-1000% or greater. Thus, if a gene exhibits a 4-fold increase in tissue experiencing hepatitis C infection or its secondary consequences compared to normal tissue, a decrease of about four-fold is often desired; similarly, a 10-fold decrease in tissue experiencing Hepatitis C infection or its secondary consequences compared to normal tissue often provides a target value of a 10-fold increase in expression to be induced by the test compound.


[0228] The amount of gene expression may be monitored using nucleic acid probes and the quantification of gene expression levels, or, alternatively, the gene product itself can be monitored, e.g., through the use of antibodies to the Hepatitis C infection protein and standard immunoassays. Proteomics and separation techniques may also allow quantification of expression.


[0229] In a preferred embodiment, gene expression or protein monitoring of a number of entities, e.g., an expression profile, is monitored simultaneously. Such profiles will typically involve a plurality of those entities described herein.


[0230] In this embodiment, the Hepatitis C infection nucleic acid probes are attached to biochips as outlined herein for the detection and quantification of Hepatitis C infection sequences in a particular cell. Alternatively, PCR may be used. Thus, a series, e.g., of microtiter plate, may be used with dispensed primers in desired wells. A PCR reaction can then be performed and analyzed for each well.


[0231] Modulators of Testicular Cancer


[0232] Expression monitoring can be performed to identify compounds that modify the expression of one or more Hepatitis C infection-associated sequences, e.g., a polynucleotide sequence set out in Tables 1A-15. Generally, in a preferred embodiment, a test modulator is added to the cells prior to analysis. Moreover, screens are also provided to identify agents that modulate Hepatitis C infection and its secondary consequences, modulate Hepatitis C infection proteins, bind to a Hepatitis C infection protein, or interfere with the binding of a Hepatitis C infection protein and an antibody or other binding partner.


[0233] The term “test compound” or “drug candidate” or “modulator” or grammatical equivalents as used herein describes any molecule, e.g., protein, oligopeptide, small organic molecule, polysaccharide, polynucleotide, etc., to be tested for the capacity to directly or indirectly alter the Hepatitis C infection phenotype (direct or indirect) or the expression of a Hepatitis C infection sequence, e.g., a nucleic acid or protein sequence. In preferred embodiments, modulators alter expression profiles, or expression profile nucleic acids or proteins provided herein. In one embodiment, the modulator suppresses a Hepatitis C infection phenotype, e.g., to a normal tissue fingerprint. In another embodiment, a modulator induced a Hepatitis C infection phenotype. Generally, a plurality of assay mixtures are run in parallel with different agent concentrations to obtain a differential response to the various concentrations. Typically, one of these concentrations serves as a negative control, e.g., at zero concentration or below the level of detection.


[0234] Drug candidates encompass numerous chemical classes, though typically they are organic molecules, preferably small organic compounds having a molecular weight of more than 100 and less than about 2,500 daltons. Preferred small molecules are less than 2000, or less than 1500 or less than 1000 or less than 500 D. Candidate agents comprise functional groups necessary for structural interaction with proteins, particularly hydrogen bonding, and typically include at least an amine, carbonyl, hydroxyl or carboxyl group, preferably at least two of the functional chemical groups. The candidate agents often comprise cyclical carbon or heterocyclic structures and/or aromatic or polyaromatic structures substituted with one or more of the above functional groups. Candidate agents are also found among biomolecules including peptides, saccharides, fatty acids, steroids, purines, pyrimidines, derivatives, structural analogs, or combinations thereof. Particularly preferred are peptides or orally active compounds.


[0235] In one aspect, a modulator will neutralize the effect of a Hepatitis C infection protein. By “neutralize” is meant that activity of a protein is inhibited or blocked with a consequent effect on the cell.


[0236] In certain embodiments, combinatorial libraries of potential modulators will be screened for an ability to bind to a Hepatitis C infection polypeptide or to modulate activity. Conventionally, new chemical entities with useful properties are generated by identifying a chemical compound (called a “lead compound”) with some desirable property or activity, e.g., inhibiting activity, creating variants of the lead compound, and evaluating the property and activity of those variant compounds. Often, high throughput screening (HTS) methods are employed for such an analysis.


[0237] In one preferred embodiment, high throughput screening methods involve providing a library containing a large number of potential therapeutic compounds (candidate compounds). Such “combinatorial chemical libraries” are then screened in one or more assays to identify those library members (particular chemical species or subclasses) that display a desired characteristic activity. The compounds thus identified can serve as conventional “lead compounds” or can themselves be used as potential or actual therapeutics.


[0238] A combinatorial chemical library is a collection of diverse chemical compounds generated by either chemical synthesis or biological synthesis by combining a number of chemical “building blocks” such as reagents. For example, a linear combinatorial chemical library, such as a polypeptide (e.g., mutein) library, is formed by combining a set of chemical building blocks called amino acids in every possible way for a given compound length (e.g., the number of amino acids in a polypeptide compound). Millions of chemical compounds can be synthesized through such combinatorial mixing of chemical building blocks. See Gallop, et al. (1994) J. Med. Chem. 37:1233-1251.


[0239] Preparation and screening of combinatorial chemical libraries is well known. Such combinatorial chemical libraries include, but are not limited to, peptide libraries (see, e.g., U.S. Pat. No. 5,010,175, Furka (1991) Pept. Prot. Res. 37:487-493, Houghton, et al. (1991) Nature 354:84-88), peptoids (PCT Publication No WO 91/19735), encoded peptides (PCT Publication WO 93/20242), random bio-oligomers (PCT Publication WO 92/00091), benzodiazepines (U.S. Pat. No. 5,288,514), diversomers such as hydantoins, benzodiazepines and dipeptides (Hobbs, et al. (1993) Proc. Nat'l Acad. Sci. USA 90:6909-6913, vinylogous polypeptides (Hagihara, et al. (1992) J. Amer. Chem. Soc. 114:6568-xxx), nonpeptidal peptidomimetics with a Beta-D-Glucose scaffolding (Hirschmann, et al. (1992) J. Amer. Chem. Soc. 114:9217-9218), analogous organic syntheses of small compound libraries (Chen, et al. (1994) J. Amer. Chem. Soc. 116:2661-xxx), oligocarbamates (Cho, et al. (1993) Science 261:1303-1305), and/or peptidyl phosphonates (Campbell, et al. (1994) J. Org. Chem. 59:658-xxx). See, generally, Gordon, et al. (1994) J. Med. Chem. 37:1385-1401, nucleic acid libraries (see, e.g., Stratagene, Corp.), peptide nucleic acid libraries (see, e.g., U.S. Pat. No. 5,539,083), antibody libraries (see, e.g., Vaughn, et al. (1996) Nature Biotechnology 14(3):309-314, and PCT/US96/10287), carbohydrate libraries (see, e.g., Liang, et al. (1996) Science 274:1520-1522, and U.S. Pat. No. 5,593,853), and small organic molecule libraries (see, e.g., benzodiazepines, page 33 Baum (Jan. 18, 1993) C&ENews; isoprenoids, U.S. Pat. No. 5,569,588; thiazolidinones and metathiazanones, U.S. Pat. No. 5,549,974; pyrrolidines, U.S. Pat. Nos. 5,525,735 and 5,519,134; morpholino compounds, U.S. Pat. No. 5,506,337; benzodiazepines, U.S. Pat. No. 5,288,514; and the like).


[0240] Devices for the preparation of combinatorial libraries are commercially available (see, e.g., 357 MPS, 390 MPS, Advanced Chem Tech, Louisville Ky., Symphony, Rainin, Woburn, Mass., 433A Applied Biosystems, Foster City, Calif., 9050 Plus, Millipore, Bedford, Mass.).


[0241] A number of well known robotic systems have also been developed for solution phase chemistries. These systems include automated workstations like the automated synthesis apparatus developed by Takeda Chemical Industries, LTD. (Osaka, Japan) and many robotic systems utilizing robotic arms (Zymate II, Zymark Corporation, Hopkinton, Mass.; Orca, Hewlett-Packard, Palo Alto, Calif.), which mimic the manual synthetic operations performed by a chemist. The above devices are suitable for use with the present invention. The nature and implementation of modifications to these devices (if any) so that they can operate as discussed herein will be apparent to persons skilled in the relevant art. In addition, numerous combinatorial libraries are themselves commercially available. See, e.g., ComGenex, Princeton, N.J.; Asinex, Moscow, Ru; Tripos, Inc., St. Louis, Mo.; ChemStar, Ltd, Moscow, RU; 3D Pharmaceuticals, Exton, Pa.; Martek Biosciences, Columbia, Md.; etc.


[0242] Assays to identify modulators are amenable to high throughput screening. Preferred assays thus detect enhancement or inhibition of Hepatitis C infection gene transcription, inhibition or enhancement of polypeptide expression, and inhibition or enhancement of polypeptide activity.


[0243] High throughput assays for the presence, absence, quantification, or other properties of particular nucleic acids or protein products are well known to those of skill in the art. Similarly, binding assays and reporter gene assays are similarly well known. Thus, e.g., U.S. Pat. No. 5,559,410 discloses high throughput screening methods for proteins, U.S. Pat. No. 5,585,639 discloses high throughput screening methods for nucleic acid binding (e.g., in arrays), while U.S. Pat. Nos. 5,576,220 and 5,541,061 disclose high throughput methods of screening for ligand/antibody binding.


[0244] In addition, high throughput screening systems are commercially available (see, e.g., Zymark Corp., Hopkinton, Mass.; Air Technical Industries, Mentor, Ohio; Beckman Instruments, Inc., Fullerton, Calif.; Precision Systems, Inc., Natick, Mass., etc.). These systems typically automate entire procedures, including sample and reagent pipetting, liquid dispensing, timed incubations, and final readings of the microplate in detector(s) appropriate for the assay. These configurable systems provide high throughput and rapid start up as well as a high degree of flexibility and customization. The manufacturers of such systems provide detailed protocols for various high throughput systems. Thus, e.g., Zymark Corp. provides technical bulletins describing screening systems for detecting the modulation of gene transcription, ligand binding, and the like.


[0245] In one embodiment, modulators are proteins, often naturally occurring proteins or fragments of naturally occurring proteins. Thus, e.g., cellular extracts containing proteins, or random or directed digests of proteinaceous cellular extracts, may be used. In this way libraries of proteins may be made for screening in the methods of the invention. Particularly preferred in this embodiment are libraries of bacterial, fungal, viral, and mammalian proteins, with the latter being preferred, and human proteins being especially preferred. Particularly useful test compound will be directed to the class of proteins to which the target belongs, e.g., substrates for enzymes or ligands and receptors.


[0246] In a preferred embodiment, modulators are peptides of from about 5-30 amino acids, with from about 5-20 amino acids being preferred, and from about 7-15 being particularly preferred. The peptides may be digests of naturally occurring proteins as is outlined above, random peptides, or “biased” random peptides. By “randomized” or grammatical equivalents herein is meant that each nucleic acid and peptide consists of essentially random nucleotides and amino acids, respectively. Since generally these random peptides (or nucleic acids, discussed below) are chemically synthesized, they may incorporate nucleotide or amino acid variations. The synthetic process can be designed to generate randomized proteins or nucleic acids, to allow the formation of the possible combinations over the length of the sequence, thus forming a library of randomized candidate bioactive proteinaceous agents.


[0247] In one embodiment, the library is randomized, with few or no sequence preferences or constants at any position. In a preferred embodiment, the library is biased. That is, some positions within the sequence are either held constant, or are selected from a limited number of possibilities. For example, in a preferred embodiment, the nucleotides or amino acid residues are randomized within a defined class, e.g., of hydrophobic amino acids, hydrophilic residues, sterically biased (either small or large) residues, towards the creation of nucleic acid binding domains, the creation of cysteines, for cross-linking, prolines for SH-3 domains, serines, threonines, tyrosines, or histidines for phosphorylation sites, etc., or to purines, etc.


[0248] Modulators of Hepatitis C infection and its secondary consequences can also be nucleic acids, as defined above.


[0249] As described above generally for proteins, nucleic acid modulating agents may be naturally occurring nucleic acids, random nucleic acids, or “biased” random nucleic acids. For example, digests of prokaryotic or eukaryotic genomes may be used as is outlined above for proteins.


[0250] In a preferred embodiment, the candidate compounds are organic chemical moieties, a wide variety of which are available in the literature.


[0251] After a candidate agent has been added and the cells allowed to incubate for some period of time, the sample containing a target sequence to be analyzed is added to the biochip. If required, the target sequence is prepared using known techniques. For example, the sample may be treated to lyse the cells, using known lysis buffers, electroporation, etc., with purification and/or amplification such as PCR performed as appropriate. For example, an in vitro transcription with labels covalently attached to the nucleotides is performed. Generally, the nucleic acids are labeled with biotin-FITC or PE, or with cy3 or cy5.


[0252] In a preferred embodiment, the target sequence is labeled with, e.g., a fluorescent, a chemiluminescent, a chemical, or a radioactive signal, to provide a means of detecting the target sequence's specific binding to a probe. The label also can be an enzyme, such as, alkaline phosphatase or horseradish peroxidase, which when provided with an appropriate substrate produces a product that can be detected. Alternatively, the label can be a labeled compound or small molecule, such as an enzyme inhibitor, that binds but is not catalyzed or altered by the enzyme. The label also can be a moiety or compound, such as, an epitope tag or biotin which specifically binds to streptavidin. For the example of biotin, the streptavidin is labeled as described above, thereby, providing a detectable signal for the bound target sequence. Unbound labeled streptavidin is typically removed prior to analysis.


[0253] These assays can be direct hybridization assays or can comprise “sandwich assays”, which include the use of multiple probes, as is generally outlined in U.S. Pat. Nos. 5,681,702, 5,597,909, 5,545,730, 5,594,117, 5,591,584, 5,571,670, 5,580,731, 5,571,670, 5,591,584, 5,624,802, 5,635,352, 5,594,118, 5,359,100, 5,124,246 and 5,681,697, all of which are hereby incorporated by reference. In this embodiment, in general, the target nucleic acid is prepared as outlined above, and then added to the biochip comprising a plurality of nucleic acid probes, under conditions that allow the formation of a hybridization complex.


[0254] A variety of hybridization conditions may be used in the present invention, including high, moderate, and low stringency conditions as outlined above. The assays are generally run under stringency conditions which allows formation of the label probe hybridization complex only in the presence of target. Stringency can be controlled by altering a step parameter that is a thermodynamic variable, including, but not limited to, temperature, formamide concentration, salt concentration, chaotropic salt concentration pH, organic solvent concentration, etc.


[0255] These parameters may also be used to control non-specific binding, as is generally outlined in U.S. Pat. No. 5,681,697. Thus it may be desirable to perform certain steps at higher stringency conditions to reduce non-specific binding.


[0256] The reactions outlined herein may be accomplished in many ways. Components of the reaction may be added simultaneously, or sequentially, in different orders, with preferred embodiments outlined below. In addition, the reaction may include a variety of other reagents. These include salts, buffers, neutral proteins, e.g., albumin, detergents, etc., which may be used to facilitate optimal hybridization and detection, and/or reduce non-specific or background interactions. Reagents that otherwise improve the efficiency of the assay, such as protease inhibitors, nuclease inhibitors, anti-microbial agents, etc., may also be used as appropriate, depending on the sample preparation methods and purity of the target.


[0257] The assay data are analyzed to determine the expression levels, and changes in expression levels as between states, of individual genes, forming a gene expression profile.


[0258] Screens are performed to identify modulators of the Hepatitis C infection phenotype. In one embodiment, screening is performed to identify modulators that can induce or suppress a particular expression profile, thus preferably generating the associated phenotype. In another embodiment, e.g., for diagnostic applications, having identified differentially expressed genes important in a particular state, screens can be performed to identify modulators that alter expression of individual genes. In an another embodiment, screening is performed to identify modulators that alter a biological function of the expression product of a differentially expressed gene. Again, having identified the importance of a gene in a particular state, screens are performed to identify agents that bind and/or modulate the biological activity of the gene product.


[0259] In addition screens can be done for genes that are induced in response to a candidate agent. After identifying a modulator based upon its ability to suppress an expression pattern associated with Hepatitis C infection, leading to a normal expression pattern, or to modulate a single Hepatitis C infection gene expression profile so as to mimic the expression of the gene from normal tissue, a screen as described above can be performed to identify genes that are specifically modulated in response to the agent. Comparing expression profiles between normal tissue and agent treated tissue experiencing Hepatitis C infection or its secondary consequences reveals genes that are not expressed in normal tissue or in tissue experiencing Hepatitis C infection or its secondary consequences, but are expressed in agent treated tissue. These agent-specific sequences can be identified and used by methods described herein for Hepatitis C infection genes or proteins. In particular these sequences and the proteins they encode find use in marking or identifying agent treated cells. In addition, antibodies can be raised against the agent induced proteins and used to target novel therapeutics to the treated sample of tissue experiencing Hepatitis C infection or its secondary consequences.


[0260] Thus, in one embodiment, a test compound is administered to a population of cells, that have an associated Hepatitis C infection expression profile. By “administration” or “contacting” herein is meant that the candidate agent is added to the cells in such a manner as to allow the agent to act upon the cell, whether by uptake and intracellular action, or by action at the cell surface. In some embodiments, nucleic acid encoding a proteinaceous candidate agent (e.g., a peptide) may be put into a viral construct such as an adenoviral or retroviral construct, and added to the cell, such that expression of the peptide agent is accomplished, e.g., PCT US97/01019. Regulatable gene therapy systems can also be used.


[0261] Once the test compound has been administered to the cells, the cells can be washed if desired and are allowed to incubate under preferably physiological conditions for some period of time. The cells are then harvested and a new gene expression profile is generated, as outlined herein.


[0262] Thus, e.g., the tissue experiencing Hepatitis C infection or it secondary consequences may be screened for agents that modulate, e.g., induce or suppress the Hepatitis C infection phenotype. A change in at least one gene, preferably many, of the expression profile indicates that the agent has an effect on Hepatitis C infection. By defining such a signature for the Hepatitis C infection phenotype, screens for new drugs that alter the phenotype can be devised. With this approach, the drug target need not be known and need not be represented in the original expression screening platform, nor does the level of transcript for the target protein need to change.


[0263] In a preferred embodiment, as outlined above, screens may be done on individual genes and gene products (proteins). That is, having identified a particular differentially expressed gene as important in a particular state, screening of modulators of either the expression of the gene or the gene product itself can be done. The gene products of differentially expressed genes are sometimes referred to herein as “Hepatitis C infection proteins” or a “Hepatitis C infection modulatory protein”. The Hepatitis C infection modulatory protein may be a fragment, or alternatively, be the full length protein to the fragment encoded by the nucleic acids of the Tables. Preferably, the Hepatitis C infection modulatory protein is a fragment. In a preferred embodiment, the Hepatitis C infection amino acid sequence which is used to determine sequence identity or similarity is encoded by a nucleic acid of Tables 1A-15. In another embodiment, the sequences are naturally occurring allelic variants of a protein encoded by a nucleic acid of Tables 1A-15. In another embodiment, the sequences are sequence variants as further described herein.


[0264] Preferably, the Hepatitis C infection modulatory protein is a fragment of about 14-24 amino acids long. More preferably the fragment is a soluble fragment. Preferably, the fragment includes a non-transmembrane region. In a preferred embodiment, the fragment has an N-terminal Cys to aid in solubility. In one embodiment, the C-terminus of the fragment is kept as a free acid and the N-terminus is a free amine to aid in coupling, e.g., to cysteine.


[0265] In one embodiment the Hepatitis C infection proteins are conjugated to an immunogenic agent as discussed herein. In one embodiment the Hepatitis C infection protein is conjugated to BSA.


[0266] Measurements of Hepatitis C infection polypeptide activity, or the Hepatitis C infection phenotype can be performed using a variety of assays. For example, the effects of the test compounds upon the function of the Hepatitis C infection polypeptides can be measured by examining parameters described above. A suitable physiological change that affects activity can be used to assess the influence of a test compound on the polypeptides of this invention. When the functional consequences are determined using intact cells or animals, one can also measure a variety of effects such as, changes in intracellular second messengers such as cGMP. In the assays of the invention, mammalian Hepatitis C infection polypeptide is typically used, e.g., mouse, preferably human.


[0267] Assays to identify compounds with modulating activity can be performed in vitro. For example, a Hepatitis C infection polypeptide is first contacted with a potential modulator and incubated for a suitable amount of time, e.g., from 0.5 to 48 hours. In one embodiment, the Hepatitis C infection polypeptide levels are determined in vitro by measuring the level of protein or mRNA. The level of protein is measured, e.g., using immunoassays such as western blotting, ELISA, and the like with an antibody that selectively binds to the Hepatitis C infection polypeptide or a fragment thereof. For measurement of mRNA, amplification, e.g., using PCR, LCR, or hybridization assays, e.g., northern hybridization, RNAse protection, or dot blotting, are preferred. The level of protein or mRNA is detected using directly or indirectly labeled detection agents, e.g., fluorescently or radioactively labeled nucleic acids, radioactively or enzymatically labeled antibodies, and the like, as described herein.


[0268] Alternatively, a reporter gene system can be devised using the Hepatitis C infection protein promoter operably linked to a reporter gene such as luciferase, green fluorescent protein, CAT, or β-gal. The reporter construct is typically transfected into a cell. After treatment with a potential modulator, the amount of reporter gene transcription, translation, or activity is measured according to standard techniques.


[0269] In a preferred embodiment, as outlined above, screens may be done on individual genes and gene products (proteins). That is, having identified a particular differentially expressed gene as important in a particular state, screening of modulators of the expression of the gene or the gene product itself can be done. The gene products of differentially expressed genes are sometimes referred to herein as “Hepatitis C infection proteins.” The Hepatitis C infection protein may be a fragment, or alternatively, be the full length protein to a fragment shown herein.


[0270] In one embodiment, screening for modulators of expression of specific genes is performed. Typically, the expression of only one or a few genes are evaluated. In another embodiment, screens are designed to first find compounds that bind to differentially expressed proteins. These compounds are then evaluated for the ability to modulate differentially expressed activity. Moreover, once initial candidate compounds are identified, variants can be further screened to better evaluate structure activity relationships.


[0271] In a preferred embodiment, binding assays are done. In general, purified or isolated gene product is used; that is, the gene products of one or more differentially expressed nucleic acids are made. For example, antibodies are generated to the protein gene products, and standard immunoassays are run to determine the amount of protein present. Alternatively, cells comprising the Hepatitis C infection proteins can be used in the assays.


[0272] Thus, in a preferred embodiment, the methods comprise combining a Hepatitis C infection protein and a candidate compound, and determining the binding of the compound to the Hepatitis C infection protein. Preferred embodiments utilize the human Hepatitis C infection protein, although other mammalian proteins may also be used, e.g., for the development of animal models of human disease. In some embodiments, as outlined herein, variant or derivative Hepatitis C infection proteins may be used.


[0273] Generally, in a preferred embodiment of the methods herein, the Hepatitis C infection protein or the candidate agent is non-diffusably bound to an insoluble support having isolated sample receiving areas (e.g., a microtiter plate, an array, etc.). The insoluble supports may be made of any composition to which the compositions can be bound, is readily separated from soluble material, and is otherwise compatible with the overall method of screening. The surface of such supports may be solid or porous and of any convenient shape. Examples of suitable insoluble supports include microtiter plates, arrays, membranes, and beads. These are typically made of glass, plastic (e.g., polystyrene), polysaccharides, nylon, or nitrocellulose, teflon™, etc. Microtiter plates and arrays are especially convenient because a large number of assays can be carried out simultaneously, using small amounts of reagents and samples. The particular manner of binding of the composition is not crucial so long as it is compatible with the reagents and overall methods of the invention, maintains the activity of the composition and is nondiffusable. Preferred methods of binding include the use of antibodies (which do not sterically block either the ligand binding site or activation sequence when the protein is bound to the support), direct binding to “sticky” or ionic supports, chemical crosslinking, the synthesis of the protein or agent on the surface, etc. Following binding of the protein or agent, excess unbound material is removed by washing. The sample receiving areas may then be blocked through incubation with bovine serum albumin (BSA), casein, or other innocuous protein or other moiety.


[0274] In a preferred embodiment, the Hepatitis C infection protein is bound to the support, and a test compound is added to the assay. Alternatively, the candidate agent is bound to the support and the Hepatitis C infection protein is added. Novel binding agents include specific antibodies, non-natural binding agents identified in screens of chemical libraries, peptide analogs, etc. Of particular interest are screening assays for agents that have a low toxicity for human cells. A wide variety of assays may be used for this purpose, including labeled in vitro protein-protein binding assays, electrophoretic mobility shift assays, immunoassays for protein binding, functional assays (phosphorylation assays, etc.), and the like.


[0275] The determination of the binding of the test modulating compound to the Hepatitis C infection protein may be done in a number of ways. In a preferred embodiment, the compound is labeled, and binding determined directly, e.g., by attaching all or a portion of the Hepatitis C infection protein to a solid support, adding a labeled candidate agent (e.g., a fluorescent label), washing off excess reagent, and determining whether the label is present on the solid support. Various blocking and washing steps may be utilized as appropriate.


[0276] In some embodiments, just one of the components is labeled, e.g., the proteins (or proteinaceous candidate compounds) can be labeled. Alternatively, more than one component can be labeled with different labels, e.g., 125I for the proteins and a fluorophor for the compound. Proximity reagents, e.g., quenching or energy transfer reagents are also useful.


[0277] In one embodiment, the binding of the test compound is determined by competitive binding assay. The competitor is a binding moiety known to bind to the target molecule (e.g., a Hepatitis C infection protein), such as an antibody, peptide, binding partner, ligand, etc. Under certain circumstances, there may be competitive binding between the compound and the binding moiety, with the binding moiety displacing the compound. In one embodiment, the test compound is labeled. Either the compound, or the competitor, or both, is added first to the protein for a time sufficient to allow binding, if present. Incubations may be performed at a temperature which facilitates optimal activity, typically between 4-40° C. Incubation periods are typically optimized, e.g., to facilitate rapid high throughput screening. Typically between 0.1 and 1 hour will be sufficient. Excess reagent is generally removed or washed away. The second component is then added, and the presence or absence of the labeled component is followed, to indicate binding.


[0278] In a preferred embodiment, the competitor is added first, followed by the test compound. Displacement of the competitor is an indication that the test compound is binding to the Hepatitis C infection protein and thus is capable of binding to, and potentially modulating, the activity of the Hepatitis C infection protein. In this embodiment, either component can be labeled. Thus, e.g., if the competitor is labeled, the presence of label in the wash solution indicates displacement by the agent. Alternatively, if the test compound is labeled, the presence of the label on the support indicates displacement.


[0279] In an alternative embodiment, the test compound is added first, with incubation and washing, followed by the competitor. The absence of binding by the competitor may indicate that the test compound is bound to the Hepatitis C infection protein with a higher affinity. Thus, if the test compound is labeled, the presence of the label on the support, coupled with a lack of competitor binding, may indicate that the test compound is capable of binding to the Hepatitis C infection protein.


[0280] In a preferred embodiment, the methods comprise differential screening to identify agents that are capable of modulating the activity of the Hepatitis C infection proteins. In this embodiment, the methods comprise combining a Hepatitis C infection protein and a competitor in a first sample. A second sample comprises a test compound, a Hepatitis C infection protein, and a competitor. The binding of the competitor is determined for both samples, and a change, or difference in binding between the two samples indicates the presence of an agent capable of binding to the Hepatitis C infection protein and potentially modulating its activity. That is, if the binding of the competitor is different in the second sample relative to the first sample, the agent is capable of binding to the Hepatitis C infection protein.


[0281] Alternatively, differential screening is used to identify drug candidates that bind to the native Hepatitis C infection protein, but cannot bind to modified Hepatitis C infection proteins. The structure of the Hepatitis C infection protein may be modeled, and used in rational drug design to synthesize agents that interact with that site. Drug candidates that affect the activity of a Hepatitis C infection protein are also identified by screening drugs for the ability to either enhance or reduce the activity of the protein.


[0282] Positive controls and negative controls may be used in the assays. Preferably control and test samples are performed in at least triplicate to obtain statistically significant results. Incubation of all samples is for a time sufficient for the binding of the agent to the protein. Following incubation, samples are washed free of non-specifically bound material and the amount of bound, generally labeled agent determined. For example, where a radiolabel is employed, the samples may be counted in a scintillation counter to determine the amount of bound compound.


[0283] A variety of other reagents may be included in the screening assays. These include reagents like salts, neutral proteins, e.g., albumin, detergents, etc., which may be used to facilitate optimal protein-protein binding and/or reduce non-specific or background interactions. Also reagents that otherwise improve the efficiency of the assay, such as protease inhibitors, nuclease inhibitors, anti-microbial agents, etc., may be used. The mixture of components may be added in an order that provides for the requisite binding.


[0284] In a preferred embodiment, the invention provides methods for screening for a compound capable of modulating the activity of a Hepatitis C infection protein. The methods comprise adding a test compound, as defined above, to a cell comprising Hepatitis C infection proteins. Many cell types may be used. The cells may contain a recombinant nucleic acid that encodes a Hepatitis C infection protein. In a preferred embodiment, a library of candidate agents are tested on a plurality of cells. In one aspect, the assays are evaluated in the presence or absence or previous or subsequent exposure of physiological signals, e.g., hormones, antibodies, peptides, antigens, cytokines, growth factors, action potentials, pharmacological agents including chemotherapeutics, radiation, carcinogenics, or other cells (e.g., cell-cell contacts). In another example, the determinations are determined at different stages of the cell cycle process.


[0285] In this way, compounds that modulate Hepatitis C infection agents are identified.


[0286] Compounds with pharmacological activity are able to enhance or interfere with the activity of the Hepatitis C infection protein. Once identified, similar structures are evaluated to identify critical structural feature of the compound.


[0287] In one embodiment, a method of inhibiting the consequences of Hepatitis C infection is provided. The method comprises administration of an inhibitor of processes that occur as a secondary consequence of Hepatitis C infection. In a further embodiment, methods of treating cells or tissues infected with Hepatitis C are provided. The method comprises administration of a inhibitor of Hepatitis C infection.


[0288] In one embodiment, a Hepatitis C infection inhibitor is an antibody as discussed above. In another embodiment, the Hepatitis C infection inhibitor is an antisense molecule.


[0289] Polynucleotide Modulators of Hepatitis C Infection and/or its Secondary Consequences Antisense Polynucleotides


[0290] In certain embodiments, the activity of a Hepatitis C infection-associated protein is down-regulated, or entirely inhibited, by the use of antisense polynucleotide, e.g., a nucleic acid complementary to, and which can preferably hybridize specifically to, a coding mRNA nucleic acid sequence, e.g., a Hepatitis C infection protein mRNA, or a subsequence thereof. Binding of the antisense polynucleotide to the mRNA reduces the translation and/or stability of the mRNA.


[0291] In the context of this invention, antisense polynucleotides can comprise naturally-occurring nucleotides, or synthetic species formed from naturally-occurring subunits or their close homologs. Antisense polynucleotides may also have altered sugar moieties or inter-sugar linkages. Exemplary among these are the phosphorothioate and other sulfur containing species which are known for use in the art. Analogs are comprehended by this invention so long as they function effectively to hybridize with the Hepatitis C infection protein mRNA. See, e.g., Isis Pharmaceuticals, Carlsbad, Calif.; Sequitor, Inc., Natick, Mass.


[0292] Such antisense polynucleotides can readily be synthesized using recombinant means, or can be synthesized in vitro. Equipment for such synthesis is sold by several vendors, including Applied Biosystems. The preparation of other oligonucleotides such as phosphorothioates and alkylated derivatives is also well known.


[0293] Antisense molecules as used herein include antisense or sense oligonucleotides. Sense oligonucleotides can, e.g., be employed to block transcription by binding to the anti-sense strand. The antisense and sense oligonucleotide comprise a single-stranded nucleic acid sequence (either RNA or DNA) capable of binding to target mRNA (sense) or DNA (antisense) sequences for Hepatitis C infection molecules. A preferred antisense molecule is for a Hepatitis C infection sequences in Tables 1A-15, or for a ligand or activator thereof. Antisense or sense oligonucleotides, according to the present invention, comprise a fragment generally at least about 14 nucleotides, preferably from about 14 to 30 nucleotides. The ability to derive an antisense or a sense oligonucleotide, based upon a cDNA sequence encoding a given protein is described in, e.g., Stein and Cohen (1988) Cancer Res. 48:2659—2668; and van der Krol, et al. (1988) BioTechniques 6:958-976).


[0294] RNA interference is a mechanism to suppress gene expression in a sequence specific manner. See, e.g., Brumelkamp, et al. (2002) Sciencexpress (Mar. 21, 2002); Sharp (1999) Genes Dev. 13:139-141; and Cathew (2001) Curr. Op. Cell Biol. 13:244-248. In mammalian cells, short, e.g., 21 nt, double stranded small interfering RNAs (siRNA) have been shown to be effective at inducing an RNAi response. See, e.g., Elbashir, et al. (2001) Nature 411:494-498. The mechanism may be used to downregulate expression levels of identified genes, e.g., treatment of or validation of relevance to disease.


[0295] Ribozymes


[0296] In addition to antisense polynucleotides, ribozymes can be used to target and inhibit transcription of Hepatitis C infection-associated nucleotide sequences. A ribozyme is an RNA molecule that catalytically cleaves other RNA molecules. Different kinds of ribozymes have been described, including group I ribozymes, hammerhead ribozymes, hairpin ribozymes, RNase P, and axhead ribozymes. See, e.g., Castanotto, et al. (1994) Adv. in Pharmacology 25:289-317.


[0297] General features of hairpin ribozymes are described, e.g., in Hampel, et al. (1990) Nuc. Acids Res. 18:299-304; European Patent Publication No. 0 360 257; U.S. Pat. No. 5,254,678. Methods of preparation are available. See, e.g., WO 94/26877; Yu, et al. (1993) Proc. Nat'l Acad. Sci. USA 90:6340-6344; Yamada, et al. (1994) Human Gene Therapy 1:39-45; Leavitt, et al. (1995) Proc. Nat'l Acad. Sci. USA 92:699-703; Leavitt, et al. (1994) Human Gene Therapy 5:1151-120; and Yamada, et al. (1994) Virology 205: 121-126.


[0298] Polynucleotide modulators of Hepatitis C infection may be introduced into a cell containing the target nucleotide sequence by formation of a conjugate with a ligand binding molecule, as described in WO 91/04753. Suitable ligand binding molecules include, but are not limited to, cell surface receptors, growth factors, other cytokines, or other ligands that bind to cell surface receptors. Preferably, conjugation of the ligand binding molecule does not substantially interfere with the ability of the ligand binding molecule to bind to its corresponding molecule or receptor, or block entry of the sense or antisense oligonucleotide or its conjugated version into the cell. Alternatively, a polynucleotide modulator of Hepatitis C infection may be introduced into a cell containing the target nucleic acid sequence, e.g., by formation of an polynucleotide-lipid complex, as described in WO 90/10448. It is understood that the use of antisense molecules or knock out and knock in models may also be used in screening assays as discussed above, in addition to methods of treatment.


[0299] Thus, in one embodiment, methods of modulating Hepatitis C infection in cells or organisms are provided. In one embodiment, the methods comprise administering to a cell an anti-Hepatitis C infection antibody that reduces or eliminates the biological activity of an endogenous Hepatitis C infection protein. Alternatively, the methods comprise administering to a cell or organism a recombinant nucleic acid encoding a Hepatitis C infection protein. This may be accomplished in any number of ways. In a preferred embodiment, e.g., when the Hepatitis C infection sequence is down-regulated during the course of Hepatitis C infection, such state may be reversed by increasing the amount of Hepatitis C infection associated gene product in the cell. This can be accomplished, e.g., by overexpressing the endogenous Hepatitis C infection gene or administering a gene encoding the Hepatitis C infection sequence, using known gene-therapy techniques. In a preferred embodiment, the gene therapy techniques include the incorporation of the exogenous gene using enhanced homologous recombination (EHR), e.g., as described in PCT/US93/03868, hereby incorporated by reference in its entirety. Alternatively, e.g., when the Hepatitis C infection sequence is up-regulated during Hepatitis C infection, the activity of the endogenous Hepatitis C infection gene is decreased, e.g., by the administration of a Hepatitis C infection antisense nucleic acid.


[0300] In one embodiment, the Hepatitis C infection proteins of the present invention may be used to generate polyclonal and monoclonal antibodies to proteins associated with Hepatitis C infection. Similarly, the Hepatitis C infection proteins can be coupled, using standard technology, to affinity chromatography columns. These columns may then be used to purify Hepatitis C infection antibodies useful for production, diagnostic, or therapeutic purposes. In a preferred embodiment, the antibodies are generated to epitopes unique to a Hepatitis C infection protein; that is, the antibodies show little or no cross-reactivity to other proteins, such as related family members. The Hepatitis C infection antibodies may be coupled to standard affinity chromatography columns and used to purify proteins associated with Hepatitis C infection. The antibodies may also be used as blocking polypeptides, as outlined above, since they will specifically bind to the Hepatitis C infection protein.


[0301] Methods of Identifying Variant Hepatitis C Infection-Associated Sequences


[0302] Without being bound by theory, expression of various Hepatitis C infection sequences is correlated with Hepatitis C infection. Accordingly, disorders based on mutant or variant Hepatitis C infection genes may be determined. In one embodiment, the invention provides methods for identifying cells containing variant Hepatitis C infection genes, e.g., determining all or part of the sequence of at least one endogenous Hepatitis C infection genes in a cell. This may be accomplished using many sequencing techniques. In a preferred embodiment, the invention provides methods of identifying the Hepatitis C infection genotype of an individual, e.g., determining all or part of the sequence of at least one Hepatitis C infection gene of the individual. This is generally done in at least one tissue of the individual, and may include the evaluation of a number of tissues or different samples of the same tissue. The method may include comparing the sequence of the sequenced Hepatitis C infection gene to a known Hepatitis C infection gene, e.g., a wild-type gene.


[0303] The sequence of all or part of a Hepatitis C infection gene can then be compared to the sequence of a known Hepatitis C infection gene to determine if any differences exist. This can be done using, e.g., known homology programs, such as Bestfit, etc. In a preferred embodiment, the presence of a difference in the sequence between the Hepatitis C infection gene of the patient and the known Hepatitis C infection gene correlates with a disease state or a propensity for a disease state, or susceptibility to effective treatment, as outlined herein.


[0304] In a preferred embodiment, the Hepatitis C infection genes are used as probes to determine the number of copies of the Hepatitis C infection gene in the genome.


[0305] In another preferred embodiment, the Hepatitis C infection genes are used as probes to determine the chromosomal localization of the Hepatitis C infection genes. Information such as chromosomal localization finds use in providing a diagnosis or prognosis in particular when chromosomal abnormalities such as translocations, and the like are identified in the Hepatitis C infection gene locus.


[0306] Administration of Pharmaceutical and Vaccine Compositions


[0307] In one embodiment, a therapeutically effective dose of a Hepatitis C infection protein or modulator thereof, is administered to a patient. By “therapeutically effective dose” herein is meant a dose that produces effects for which it is administered. The exact dose will depend on the purpose of the treatment, and will be ascertainable by one skilled in the art using known techniques. See, e.g., Ansel, et al. (1999) Pharmaceutical Dosage Forms and Drug Delivery Lippincott; Lieberman (1992) Pharmaceutical Dosage Forms (vols. 1-3) Dekker, ISBN 0824770846, 082476918X, 0824712692, 0824716981; Lloyd (1999) The Art, Science and Technology of Pharmaceutical Compounding Amer. Pharmaceut. Assn.; and Pickar (1998) Dosage Calculations Thomson. Adjustments for testicular cancer degradation, systemic versus localized delivery, and rate of new protease synthesis, as well as the age, body weight, general health, sex, diet, time of administration, drug interaction, and the severity of the condition may be necessary.


[0308] A “patient” for the purposes of the present invention includes both humans and other animals, particularly mammals. Thus the methods are applicable to both human therapy and veterinary applications. In the preferred embodiment the patient is a mammal, preferably a primate, and in the most preferred embodiment the patient is human.


[0309] The administration of the Hepatitis C infection proteins and modulators thereof of the present invention can be done in a variety of ways as discussed above, including, but not limited to, orally, subcutaneously, intravenously, intranasally, transdermally, intraperitoneally, intramuscularly, intrapulmonary, vaginally, rectally, or intraocularly. In some instances, e.g., in the treatment of wounds and inflammation, the Hepatitis C infection proteins and modulators may be directly applied as a solution or spray.


[0310] The pharmaceutical compositions of the present invention comprise a Hepatitis C infection protein in a form suitable for administration to a patient. In the preferred embodiment, the pharmaceutical compositions are in a water soluble form, such as being present as pharmaceutically acceptable salts, which is meant to include both acid and base addition salts. “Pharmaceutically acceptable acid addition salt” refers to those salts that retain the biological effectiveness of the free bases and that are not biologically or otherwise unuseable, formed with inorganic acids such as hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, phosphoric acid, and the like, and organic acids such as acetic acid, propionic acid, glycolic acid, pyruvic acid, oxalic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, p-toluenesulfonic acid, salicylic acid, and the like. “Pharmaceutically acceptable base addition salts” include those derived from inorganic bases such as sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, aluminum salts, and the like. Particularly preferred are the ammonium, potassium, sodium, calcium, and magnesium salts. Salts derived from pharmaceutically acceptable organic non-toxic bases include salts of primary, secondary, and tertiary amines, substituted amines including naturally occurring substituted amines, cyclic amines and basic ion exchange resins, such as isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, and ethanolamine.


[0311] The pharmaceutical compositions may also include one or more of the following: carrier proteins such as serum albumin; buffers; fillers such as microcrystalline cellulose, lactose, corn and other starches; binding agents; sweeteners and other flavoring agents; coloring agents; and polyethylene glycol.


[0312] The pharmaceutical compositions can be administered in a variety of unit dosage forms depending upon the method of administration. For example, unit dosage forms suitable for oral administration include, but are not limited to, powder, tablets, pills, capsules and lozenges. It is recognized that Hepatitis C infection protein modulators (e.g., antibodies, antisense constructs, ribozymes, small organic molecules, etc.) when administered orally, should be protected from digestion. This is typically accomplished either by complexing the molecule(s) with a composition to render it resistant to acidic and enzymatic hydrolysis, or by packaging the molecule(s) in an appropriately resistant carrier, such as a liposome or a protection barrier. Means of protecting agents from digestion are available.


[0313] The compositions for administration will commonly comprise a Hepatitis C infection protein modulator dissolved in a pharmaceutically acceptable carrier, preferably an aqueous carrier. A variety of aqueous carriers can be used, e.g., buffered saline and the like. These solutions are sterile and generally free of undesirable matter. These compositions may be sterilized by conventional, well known sterilization techniques. The compositions may contain pharmaceutically acceptable auxiliary substances as required to approximate physiological conditions such as pH adjusting and buffering agents, toxicity adjusting agents and the like, e.g., sodium acetate, sodium chloride, potassium chloride, calcium chloride, sodium lactate and the like. The concentration of active agent in these formulations can vary widely, and will be selected primarily based on fluid volumes, viscosities, body weight, and the like in accordance with the particular mode of administration selected and the patient's needs. See, e.g., (1980) Remington's Pharmaceutical Science (18th ed.) Mack; and Hardman and Limbird (eds. 2001) Goodman and Gilman: The Pharmacological Basis of Therapeutics (10th ed.) McGraw-Hill.


[0314] Thus, a typical pharmaceutical composition for intravenous administration would be about 0.1 to 10 mg per patient per day. Dosages from 0.1 up to about 100 mg per patient per day may be used, particularly when the drug is administered to a secluded site and not into the blood stream, such as into a body cavity or into a lumen of an organ. Substantially higher dosages are possible in topical administration. Actual methods for preparing parenterally administrable compositions will be known or apparent. See, e.g., Remington's Pharmaceutical Science and Goodman and Gilman: The Pharmacological Basis of Therapeutics, supra.


[0315] The compositions containing modulators of Hepatitis C infection proteins can be administered for therapeutic or prophylactic treatments. In therapeutic applications, compositions are administered to a patient suffering from infection in an amount sufficient to cure or at least partially arrest the disease and its complications. An amount adequate to accomplish this is defined as a “therapeutically effective dose.” Amounts effective for this use will depend upon the severity of the disease and the general state of the patient's health. Single or multiple administrations of the compositions may be administered depending on the dosage and frequency as required and tolerated by the patient. The composition should provide a sufficient quantity of the agents of this invention to effectively treat the patient. An amount of modulator that is capable of preventing or slowing the development of disease progression in a mammal is referred to as a “prophylactically effective dose.” The particular dose required for a prophylactic treatment will depend upon the medical condition and history of the mammal, the particular strains being prevented, as well as other factors such as age, weight, gender, administration route, efficiency, etc. Such prophylactic treatments may be used, e.g., in a mammal who has previously had infection to prevent a recurrence of the infection, or in a mammal who is suspected of having a significant likelihood of developing progression. Vaccine strategies may be used, in either a DNA vaccine form, or protein vaccine.


[0316] It will be appreciated that the present Hepatitis C infection protein-modulating compounds can be administered alone or in combination with additional Hepatitis C infection modulating compounds or with other therapeutic agent, e.g., other anti-viral agents or treatments.


[0317] In numerous embodiments, one or more nucleic acids, e.g., polynucleotides comprising nucleic acid sequences set forth in Tables 1A-15, such as antisense polynucleotides or ribozymes, will be introduced into cells, in vitro or in vivo. The present invention provides methods, reagents, vectors, and cells useful for expression of Hepatitis C infection-associated polypeptides and nucleic acids using in vitro (cell-free), ex vivo or in vivo (cell or organism-based) recombinant expression systems.


[0318] The particular procedure used to introduce the nucleic acids into a host cell for expression of a protein or nucleic acid is application specific. Many procedures for introducing foreign nucleotide sequences into host cells may be used. These include the use of calcium phosphate transfection, spheroplasts, electroporation, liposomes, microinjection, plasma vectors, viral vectors and any of the other well known methods for introducing cloned genomic DNA, cDNA, synthetic DNA or other foreign genetic material into a host cell. See, e.g., Berger and Kimmel (1987) Guide to Molecular Cloning Techniques from Methods in Enzymology (vol. 152) Academic Press; Ausubel, et al. (eds. 1999 and supplements) Current Protocols Lippincott; and Sambrook, et al. (2001) Molecular Cloning: A Laboratory Manual (3d ed., Vol. 1-3) CSH Press.


[0319] In a preferred embodiment, Hepatitis C infection proteins and modulators are administered as therapeutic agents, and can be formulated as outlined above. Similarly, Hepatitis C infection genes (including both the full-length sequence, partial sequences, or regulatory sequences of the Hepatitis C infection coding regions) can be administered in a gene therapy application. These Hepatitis C infection genes can include inhibitory applications, e.g., inhibitory RNA, gene therapy (e.g., for incorporation into the genome), or antisense compositions.


[0320] Hepatitis C infection polypeptides and polynucleotides can also be administered as vaccine compositions to stimulate HTL, CTL, and antibody responses. Such vaccine compositions can include, e.g., lipidated peptides (see, e.g., Vitiello, et al. (1995) J. Clin. Invest. 95:341-349), peptide compositions encapsulated in poly(DL-lactide-co-glycolide) (“PLG”) microspheres (see, e.g., Eldridge, et al. (1991) Molec. Immunol. 28:287-294; Alonso, et al. (1994) Vaccine 12:299-306; Jones, et al. (1995) Vaccine 13:675-681), peptide compositions contained in immune stimulating complexes (ISCOMS) (see, e.g., Takahashi, et al. (1990) Nature 344:873-875; Hu, et al. (1998) Clin. Exp. Immunol. 113:235-243), multiple antigen peptide systems (MAPs) (see, e.g., Tam (1988) Proc. Nat'l Acad. Sci. USA 85:5409-5413; Tam (1996) J. Immunol. Meth. 196:17-32), peptides formulated as multivalent peptides; peptides for use in ballistic delivery systems, typically crystallized peptides, viral delivery vectors (Perkus, et al., p. 379, in Kaufmann (ed. 1996) Concepts in Vaccine Development de Gruyter; Chakrabarti, et al. (1986) Nature 320:535-537; Hu, et al. (1986) Nature 320:537-540; Kieny, et al. (1986) Bio/Technology 4:790-795; Top, et al. (1971) J. Infect. Dis. 124:148-154; Chanda, et al. (1990) Virology 175:535-547), particles of viral or synthetic origin (see, e.g., Kofler, et al. (1996) J. Immunol. Meth. 192:25-35; Eldridge, et al. (1993) Sem. Hematol. 30:16-24; Falo, et al. (1995) Nature Med. 1:649-653), adjuvants (Warren, et al. (1986) Ann. Rev. Immunol. 4:369-388; Gupta, et al. (1993) Vaccine 11:293-306), liposomes (Reddy, et al. (1992) J. Immunol. 148:1585-1589; Rock (1996) Immunol. Today 17:131-137), or naked or particle absorbed cDNA (Ulmer, et al. (1993) Science 259:1745-1749; Robinson, et al. (1993) Vaccine 11:957-960; Shiver, et al., p 423, in Kaufmann (ed. 1996) Concepts in Vaccine Development de Gruyter; Cease and Berzofsky (1994) Ann. Rev. Immunol. 12:923-989; and Eldridge, et al. (1993) Sem. Hematol. 30:16-24). Toxin-targeted delivery technologies, also known as receptor mediated targeting, such as those of Avant Immunotherapeutics, Inc. (Needham, Mass.) may also be used.


[0321] Vaccine compositions often include adjuvants. Many adjuvants contain a substance designed to protect the antigen from rapid catabolism, such as aluminum hydroxide or mineral oil, and a stimulator of immune responses, such as lipid A, Bortadella pertussis or Mycobacterium tuberculosis derived proteins. Certain adjuvants are commercially available as, e.g., Freund's Incomplete Adjuvant and Complete Adjuvant (Difco Laboratories, Detroit, Mich.); Merck Adjuvant 65 (Merck and Company, Inc., Rahway, N.J.); AS-2 (SmithKline Beecham, Philadelphia, Pa.); aluminum salts such as aluminum hydroxide gel (alum) or aluminum phosphate; salts of calcium, iron or zinc; an insoluble suspension of acylated tyrosine; acylated sugars; cationically or anionically derivatized polysaccharides; polyphosphazenes; biodegradable microspheres; monophosphoryl lipid A and quil A. Cytokines, such as GM-CSF, interleukin-2, -7, -12, and other like growth factors, may also be used as adjuvants.


[0322] Vaccines can be administered as nucleic acid compositions wherein DNA or RNA encoding one or more of the polypeptides, or a fragment thereof, is administered to a patient. This approach is described, for instance, in Wolff, et al., Science 247:1465 (1990) as well as U.S. Pat. Nos. 5,580,859; 5,589,466; 5,804,566; 5,739,118; 5,736,524; 5,679,647; WO 98/04720; and in more detail below. Examples of DNA-based delivery technologies include “naked DNA”, facilitated (bupivicaine, polymers, peptide-mediated) delivery, cationic lipid complexes, and particle-mediated (“gene gun”) or pressure-mediated delivery (see, e.g., U.S. Pat. No. 5,922,687).


[0323] For therapeutic or prophylactic immunization purposes, the peptides of the invention can be expressed by viral or bacterial vectors. Examples of expression vectors include attenuated viral hosts, such as vaccinia or fowlpox. This approach involves the use of vaccinia virus, e.g., as a vector to express nucleotide sequences that encode Hepatitis C infection polypeptides or polypeptide fragments. Upon introduction into a host, the recombinant vaccinia virus expresses the immunogenic peptide, and thereby elicits an immune response. Vaccinia vectors and methods useful in immunization protocols are described in, e.g., U.S. Pat. No. 4,722,848. Another vector is BCG (Bacille Calmette Guerin). See Stover, et al. (1991) Nature 351:456-460. A wide variety of other vectors are available for therapeutic administration or immunization, e.g., adeno and adeno-associated virus vectors, retroviral vectors, Salmonella typhi vectors, detoxified anthrax toxin vectors, and the like. See, e.g., Shata, et al. (2000) Mol. Med. Today 6:66-71; Shedlock, et al. (2000) J. Leukoc. Biol. 68:793-806; and Hipp, et al. (2000) In Vivo 14:571-85).


[0324] Methods for the use of genes as DNA vaccines are well known, and include placing a Hepatitis C infection gene or portion of a Hepatitis C infection gene under the control of a regulatable promoter or a tissue-specific promoter for expression in a Hepatitis C infection patient. The Hepatitis C infection gene used for DNA vaccines can encode full-length Hepatitis C infection proteins, but more preferably encodes portions of the Hepatitis C infection proteins including peptides derived from the Hepatitis C infection protein. In one embodiment, a patient is immunized with a DNA vaccine comprising a plurality of nucleotide sequences derived from a Hepatitis C infection gene. For example, Hepatitis C infection-associated genes or sequence encoding subfragments of a Hepatitis C infection protein are introduced into expression vectors and tested for their immunogenicity in the context of Class I MHC and an ability to generate cytotoxic T cell responses. This procedure provides for production of cytotoxic T cell responses against cells which present antigen, including intracellular epitopes.


[0325] In a preferred embodiment, the DNA vaccines include a gene encoding an adjuvant or accessory molecule with the DNA vaccine. Such adjuvant molecules may include cytokines that increase the immunogenic response to the Hepatitis C infection polypeptide encoded by the DNA vaccine. Additional or alternative adjuvants are available.


[0326] In another preferred embodiment Hepatitis C infection genes find use in generating animal models of Hepatitis C infection. When the Hepatitis C infection gene identified is repressed or diminished in cancer tissue, gene therapy technology, e.g., wherein antisense RNA directed to the Hepatitis C infection gene will also diminish or repress expression of the gene. Animal models of Hepatitis C infection find use in screening for modulators of a Hepatitis C infection-associated sequence or modulators of Hepatitis C infection. Similarly, transgenic animal technology including gene knockout technology, e.g., as a result of homologous recombination with an appropriate gene targeting vector, will result in the absence or increased expression of the Hepatitis C infection protein. When desired, tissue-specific expression or knockout of the Hepatitis C infection protein may be necessary.


[0327] It is also possible that the Hepatitis C infection protein is overexpressed during Hepatitis C infection. As such, transgenic animals can be generated that overexpress the Hepatitis C infection protein. Depending on the desired expression level, promoters of various strengths can be employed to express the transgene. Also, the number of copies of the integrated transgene can be determined and compared for a determination of the expression level of the transgene. Animals generated by such methods find use as animal models of Hepatitis C infection and are additionally useful in screening for modulators to treat Hepatitis C infection and/or its secondary consequences.


[0328] Kits for Use in Diagnostic and/or Prognostic Applications


[0329] For use in diagnostic, research, and therapeutic applications suggested above, kits are also provided by the invention. In the diagnostic and research applications such kits may include some of the following: assay reagents, buffers, Hepatitis C infection-specific nucleic acids or antibodies, hybridization probes and/or primers, antisense polynucleotides, ribozymes, dominant negative Hepatitis C infection polypeptides or polynucleotides, small molecules inhibitors of Hepatitis C infection-associated sequences etc. A therapeutic product may include sterile saline or another pharmaceutically acceptable emulsion and suspension base.


[0330] In addition, the kits may include instructional materials containing directions (e.g., protocols) for the practice of the methods of this invention. While the instructional materials typically comprise written or printed materials they are not limited to such. Any medium capable of storing such instructions and communicating them to an end user is contemplated by this invention. Such media include, but are not limited to electronic storage media (e.g., magnetic discs, tapes, cartridges, chips), optical media (e.g., CD ROM), and the like. Such media may include addresses to internet sites that provide such instructional materials.


[0331] The present invention also provides for kits for screening for modulators of Hepatitis C infection-associated sequences. Such kits can be prepared from readily available materials and reagents. For example, such kits can comprise one or more of the following materials: a Hepatitis C infection-associated polypeptide or polynucleotide, reaction tubes, and instructions for testing Hepatitis C infection-associated activity. Optionally, the kit contains biologically active Hepatitis C infection protein. A wide variety of kits and components can be prepared according to the present invention, depending upon the intended user of the kit and the particular needs of the user. Diagnosis would typically involve evaluation of a plurality of genes or products. The genes will be selected based on correlations with important parameters in disease which may be identified in historical or outcome data.


[0332] It is understood that the examples described above in no way serve to limit the true scope of this invention, but rather are presented for illustrative purposes. All publications, sequences of accession numbers, and patent applications cited in this specification are herein incorporated by reference as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference.







EXAMPLES


Example 1


Gene Chip Analyses

[0333] Molecular profiles of various normal and testicular cancer tissues were determined and analyzed using gene chips. RNA was isolated and gene chip analysis was performed as described (Glynne, et al. (2000) Nature 403:672-676; Zhao, et al. (2000) Genes Dev. 14:981-993).


[0334] Tables 1B-14B list the accession numbers for those Pkey's lacking UnigeneID's for tables 1A-14A. For each probeset is listed the gene cluster number from which nucleotides were designed. Gene clusters were compiled using sequences derived from Genbank ESTs and mRNAs. These sequences were clustered based on sequence similarity using Clustering and Alignment Tools (DoubleTwist, Oakland Calif.). Genbank accession numbers for sequences comprising each cluster are listed in the “Accession” column.


[0335] Tables 1C-14C list genomic positioning for Pkeys lacking Unigene ID's and accession numbers in tables 1A-14A. For each predicted exon is listed genomic sequence source used for prediction. Nucleotide locations of each predicted exon are also listed.
1TABLE 1A589 GENES UPREGULATED IN HEPATITIS C [see 60/308, 188]PkeyExAccnUnigeneIDTitleR1428227AA321649Hs. 2248INTERFERON-GAMMA INDUCED PROTEIN PRECURSOR (G32426711AA383471Hs. 180669conserved gene amplified in osteosarcoma20408063BE086548Hs. 42346calcineurin-binding protein calsarcin-119422746NM_004484Hs. 119651glypican 318418318U47732Hs. 84072transmembrane 4 superfamily member 311414052AW578849Hs. 283552ESTs, Weakly similar to unnamed protein produ11453319AI985369Hs. 20117ESTs10424878H57111Hs. 221132ESTs10426793X89887Hs. 172350HIR (histone cell cycle regulation defective,10434210AA665612Hs. 120874ESTs9449613N63808Hs. 34299ESTs8421904BE143533Hs. 109309hypothetical protein FLJ200358427283AL119796Hs. 174185ectonucleotide pyrophosphatase/phosphodiester8416206AW206248Hs. 111092Homo sapiens cDNA: FLJ22332 fis, clone HRC0578408096BE250162Hs. 83765dihydrofolate reductase8447541AK000288Hs. 18800hypothetical protein FLJ202818414812X72755Hs. 77367monokine induced by gamma interferon8436169AA888311Hs. 17602Homo sapiens cDNA FLJ12381 fis, clone MAMMA107409231AA446644Hs. 692GA733-2; epithelial glycoprotein (EGP) (KSA)7418216AA662240Hs. 283099AF15q14 protein7432094AI658580Hs. 61426ESTs7425053AF046024Hs. 154320ubiquitin-activating enzyme E1C (homologous t7417621AV654694Hs. 82316interferon-induced, hepatitis C-associated mi7414004AA737033Hs. 7155ESTs, Weakly similar to 2115357A TYKi protein7426052N49068Hs. 93966ESTs7435102AW899053Hs. 76917F-box only protein 87417788AI436699Hs. 84928nuclear transcription factor Y, beta7445757AW449065Hs. 13264KIAA0856 protein7456619AV647917Hs. 107153inhibitor of growth family, member 1-like7419743AW408762Hs. 127478ESTs7414737AI160386Hs. 125087ESTs7428708NM_014897Hs. 190386KIAA0924 protein7449718AA459480Hs23956hypothetical protein FLJ205026448402BE244226Hs. 21094RAB18, member RAS oncogene family6434733AI334367Hs. 159337ESTs6425266J00077Hs. 155421alpha-fetoprotein6432706NM_013230Hs. 286124CD246407204R41933Hs. 140237ESTs, Weakly similar to AF119917 13 PRO1722 [6409401AI201895Hs. 181309proteasome (prosome, macropain) subunit, alph6424626AA344308Hs. 128427ESTs6443547AW271273Hs. 23767ESTs6409068AW236991Hs. 102495ESTs6422173BE385828Hs. 250619phorbolin-like protein MDS0196425815R94023Hs. 94560ESTs6448111AA053486Hs. 20315interferon-induced protein with tetratricopep6430594AK000790Hs. 246885hypothetical protein FLJ207836432435BE218886Hs. 282070ESTs6449245AI636539Hs. 224296ESTs6400719NM_004055Hs. 6133calpain 56442961BE614474Hs. 289074Homo sapiens cDNA FLJ13986 fis, clone Y79AA106409153W03754Hs. 50813hypothetical protein FLJ200226422553AI697720Hs. 171455ESTs6442432BE093589Hs. 38178Homo sapiens cDNA: FLJ23468 fis, clone HSI1166437086AW291411Hs. 192531ESTs, Weakly similar to AF244088 1 zinc finge6401598AA172106Hs. 110950Rag C protein6438523H66220Hs. 278177ESTs6437267AW511443Hs. 258110ESTs6408035NM_006242Hs. 42215protein phosphatase 1, regulatory subunit 65433401AF039698Hs. 284217serologically defined colon cancer antigen 335410541AA065003Hs. 64179hypothetical protein5455743BE073754gb: RC0-BT0561-210100-032-d07 BT0561 Homo sapi5429167BE465867Hs. 197751KIAA0666 protein5429490AI971131Hs. 293684ESTs, Weakly similar to alternatively spliced5434263N34895Hs. 44648ESTs5441046W01538Hs. 126742ESTs5452327AK000196Hs. 29052hypothetical protein FLJ201895416504T85831Hs. 16004ESTs5432723D29677Hs. 3085KIAA0054 gene product; Helicase5423588W18186Hs. 117688ESTs, Weakly similar to ALU5_HUMAN ALU SUBFAM432960AW150945Hs. 144758ESTs5403041c21p3_565predicted exon433001AF217513Hs. 279905clone HQ0310 PRO0310p15419407AW410377Hs. 41502Homo sapiens cDNA: FLJ21276 fis, clone COL0185411252AB018549Hs. 69328MD-2 protein5444670H58373Hs. 37494ESTs5445525BE149866Hs. 14831ESTs5414646AA353776Hs. 901CD48 antigen (B-cell membrane protein)5429747M87507Hs. 2490caspase 1, apoptosis-related cysteine proteus5434666AF151103Hs. 112259T cell receptor gamma locus5413541BE147036gb: QV4-HT0222-091199-024-e10 HT0222 Homo sapi5424737BE301883Hs. 152707glioblastoma amplified sequence5426780BE242284Hs. 172199adenylate cyclase 75441562AW578981Hs. 52184hypothetical protein FLJ206185446459AI680731Hs. 170399ESTs5409342AU077058Hs. 54089BRCA1 associated RING domain 15410577X91911Hs. 64639glioma pathogenesis-related protein5428250AW809208Hs. 183297DKFZP566F2124 protein5450447AF212223Hs. 25010hypothetical protein P15-25430261AA305127Hs. 237225ribosomal protein S5 pseudogene 15433312AI241331Hs. 131765ESTs5442366AA115629Hs. 118531ESTs5427846AW499770Hs. 180948KIAA0729 protein5454075R43826Hs. 16313ESTs5425324M89470Hs. 155644paired box gene 25410527AW851066gb: IL3-CT0220-150200-070-B02 CT0220 Homo sapi5456439AA251242Hs. 103238ESTs5434948AI498469Hs. 12622ESTs, Highly similar to AF161436 1 HSPC318 [H5436488BE620909Hs. 261023hypothetical protein FLJ209585411466AW847669gb: IL3-CT0213-280100-056-G10 CT0213 Homo sapi5432378AI493046Hs. 146133ESTs5402526c1p1_17942predicted exon420433NM_007016Hs. 97627protein similar to E.coli yhdg and R. capsula5441595AW206035Hs. 192123ESTs5430008AW085625Hs. 186838ESTs; Weakly similar to similar to zinc finge5434924AA443164Hs. 23259hypothetical protein FLJ134335419003T78640Hs. 268595ESTs5435126AI393666Hs. 42315Homo sapiens cDNA FLJ13036 fis, clone NT2RP305447513AW955776gb: EST367846 MAGE resequences, MAGD Homo sapi5423258L13460Hs. 1644cytochrome P450, subfamily VIIA (cholesterol5417308H60720Hs. 81892KIAA0101 gene product4442760BE075297Hs. 10067ESTs, Weakly similar to WASP-family protein4444758AL044878Hs. 118993-hydroxy-3-methylglutaryl-Coenzyme A reducta4448752AA593867Hs. 170890Homo sapiens cDNA: FLJ21129 fis, clone CAS0624424623AW963062Hs. 165809ESTs4431982AW419296Hs. 105754ESTs4441028AI333660Hs. 17558ESTs4402811c1p3_2372predicted exon4416839H94900Hs. 17882ESTs4421029AW057782Hs. 293053ESTs4417301AI478158Hs. 164478hypothetical protein FLJ21939 similar to 5-az4430778D90337Hs. 247916natriuretic peptide precursor C4443380AI792478Hs. 135377ESTs4447183AI554733Hs. 173182ESTs4456383AI148037gb: qg61e01.r1 Soares_testis_NHT Homo sapiens4458239BE439877Hs. 283389ESTs4407190AA600135gb: ae50c06.s1 Stratagene lung carcinoma 937214425583AF077346Hs. 158315interleukin 18 receptor accessory protein4439593BE073597Hs. 124863ESTs4430200BE613337Hs. 234896geminin4456299R93374Hs. 14173ESTs4421939BE169531Hs. 109727TAK1-binding protein 2; KIAA0733 protein4437282AI810593Hs. 16587ESTs4410315AI638871Hs. 17625ESTs4408380AF123050Hs. 44532diubiquitin4442993BE018682Hs. 44343ESTs4450560BE383204gb: 601298758F1 NIH_MGC_19 Homo sapiens cDNA c4407444AF229803gb: Homo sapiens endozepine-like protein type4408558AW015759Hs. 235709ESTs4431214AA294921Hs. 250811v-ral simian leukemia viral oncogene homolog4441887AW967865Hs. 92145ESTs4413871W17187Hs. 75598heterogeneous nuclear ribonucleoprotein A2/B14422363T55979Hs. 115474replication factor C (activator 1) 3 (38 kD)4439175AF086021Hs. 271113ESTs4419375W27916gb: 39f6 Humun retina cDNA randomly primed sub4424430AI769467Hs. 96769ESTs4435571AF212225Hs. 283693BM022 protein4425100AF051850Hs. 154567supervillin4410430AW732554gb: bb08b10.y1 NIH_MGC_14 Homo sapiens cDNA cl4430273AI311127Hs. 125522ESTs4449052AW029507Hs. 161102ESTs4454750AW866285gb: QV4-SN0024-080400-167-a09 SN0024 Homo sapi4429732U20158Hs. 2488lymphocyte cytosolic protein 2 (SH2 domain-co4403747c4p1_4301predicted exon4418724AA460597Hs. 87784hypothetical protein dJ102H19.44414899AW975433Hs. 36288ESTs4433112AA973801Hs. 144553ESTs, Weakly similar to unnamed protein produ4439971W32474Hs. 7942hypothetical protein FLJ200804421170BE217797Hs. 126052ESTs4443454AI057494Hs. 133421ESTs4443885H91806Hs. 15284ESTs4446648AL137521Hs. 15797Homo sapiens mRNA; cDNA DKFZp434D0218 (from c4456182H85328Hs. 239045ESTs4431318AA502700Hs. 293147ESTs4453950AA156998Hs. 211568eukaryotic translation initiation factor 4 ga4411857AW879403gb: PM0-OT0019-150300-002-d01 OT0019 Homo sapi4409205AI952884Hs. 14832ESTs, Moderately similar to unnamed protein p4411083N41340Hs. 68318hypothetical protein FLJ203444428035AA482027Hs. 142569ESTs4435703AW630133Hs. 83313GK003 protein4413786AW613780Hs. 13500ESTs4434375BE277910Hs. 38333′-phosphoadenosine 5′-phosphosulfate synthas4448478AI523218Hs. 203456ESTs4451192AA019551Hs. 60687ESTs, Moderately similar to KIAA0544 protein4457235L20433Hs. 211588POU domain, class 4, transcription factor 14425491AA883316Hs. 255221ESTs4430820AF194815Hs. 248012immunoglobulin lambda variable 4-34432572AI660840Hs. 191202ESTs, Weakly similar to ALUE_HUMAN !!!! ALU C4457250AA811987Hs. 125779ESTs4406367ph2_15338predicted exon4455960BE165256gb: QV1-HT0473-130300-106-f04 HT0473 Homo sapi4429503AA394183Hs. 26873ESTs4419286AA236005Hs. 221303ESTs4453555N23574Hs. 123649ESTs, Moderately similar to ALU7_HUMAN ALU SU4423165AI937547Hs. 124915Human DNA sequence from clone 380A1 on chromo4402230c19p1_5271predicted exonDAL8451356AA748418Hs. 164577ESTs4409712AA167385Hs. 13583ESTs4442281N34742Hs. 170065Homo sapiens cDNA FLJ13492 fis, clone PLACE104434941AW073202Hs. 18368DKFZP564B0769 protein4424145AW802763Hs. 193124ESTs4430665BE350122Hs. 157367ESTs4442878AI868648Hs. 22315ESTs4457307AI311127Hs. 125522ESTs4414522AW518944Hs. 76325Homo sapiens cDNA: FLJ23125 fis, clone LNG0824421650AA781795Hs. 122587ESTs4426416AW612744Hs. 169824killer cell lectin-like receptor subfamily B,4458836AI568607Hs. 182112ESTs4424113AI743880Hs. 12876ESTs4418549AA927177Hs. 86041CGG triplet repeat binding protein 14442297NM_006202Hs. 89901phosphodiesterase 4A, cAMP-specific (dunce (D4419046T81816Hs. 193723ESTs4429025AI399910Hs. 4842ESTs4433230AW136134Hs. 220277ESTs4452744AI267652Hs. 30504Homo sapiens mRNA; cDNA DKFZp434E082 (from cl4446488AB037782Hs. 15119KIAA1361 protein4422052AA302744Hs. 104518ESTs4430299W28673Hs. 106747serine carboxypeptidase 1 precursor protein4442431BE349856gb: ht05a12.x1 NCI_CGAP_Kid13 Homo sapiens cDN4411653AF070578Hs. 71168Homo sapiens clone 24674 mRNA sequence4440384AA884275Hs. 137052ESTs4443542AI927065Hs. 146040ESTs4443638AW028696Hs. 145679ESTs4431910AK000142Hs. 272192Homo sapiens mRNA tor KIAA1590 protein, parti4440381AA917808Hs. 190495ESTs4407272X98958gb: H. sapiens rearranged Ig heavy chain (clone4417173U61397Hs. 81424ubiquitin-like 1 (sentrin)4417675AI808607Hs. 3781similar to murine leucine-rich repeat protein4446552AW470827Hs. 156241ESTs4450697AW152166Hs. 182113ESTs4411960R77776Hs. 18103ESTs4418637T86737Hs. 193536ESTs4444065AW449415Hs. 10260Homo sapiens cDNA FLJ11341 fis, clone PLACE104409038T97490Hs. 50002small inducible cytokine subfamily A (Cys-Cys3418205L21715Hs. 83760troponin I, skeletal, fast3435177AI018174Hs. 42936ESTs3436027AI864053Hs. 39972ESTs, Weakly similar to I38588 reverse transc3452420BE564871Hs. 29463centrin, EF-hand protein, 3 (CDC31 yeast homo3423839AA985505Hs. 127217ESTs3435163AA668884Hs. 19155ESTs3449704AK000733Hs. 23900GTPase activating protein3433854AA610649gb: np95c03.s1 NCI_CGAP_Thy1 Homo sapiens cDNA3414821M63835Hs. 77424Fc fragment of IgG, high affinity Ia, recepto3431300AA502346gb: ne26b03.s1 NCI_CGAP_Co3 Homo sapiens cDNA3407469D55640gb: Human monocyte PABL (pseudoautosomal bound3450515AW304226Hs. 7298biphenyl hydrolase-like (serine hydrolase; br3430750AI650360Hs. 100256ESTs3410833AW806900gb: QV4-ST0023-160400-172-d02 ST0023 Homo sapi3426062N57014Hs. 44013ESTs3432945AL043683Hs. 271357ESTs, Weakly similar to unnamed protein produ3455708BE069326gb: QV3-BT0381-170100-060-g03 BT0381 Homo sapi3443240R02419Hs. 15338ESTs3451429AA525993Hs. 173699ESTs, Weakly similar to ALU1_HUMAN ALU SUBFAM3435812AA700439Hs. 188490ESTs3453799N32080Hs. 271700ESTs3406970M29994gb: Human alpha-I spectrin gene, exon 12.3425195AA352026gb: EST59954 Infant brain Homo sapiens cDNA 5′3428180AI129767Hs. 182874Homo sapiens cDNA: FLJ21929 fis, clone HEP0423430753AI432401Hs. 2659fibrinogen-like 23445800AA126419Hs. 301632ESTs3439680AW245741Hs. 58461ESTs, Weakly similar to Unknown gene product3444858AI199738Hs. 208275ESTs, Weakly similar to unnamed protein produ3422879AI241409Hs. 188092ESTs3444888AI651039Hs. 148559ESTs3407897AA812234Hs. 270134hypothetical protein FLJ202803409512AW979187Hs. 293591ESTs, Weakly similar to hypothetical protein3419843AA749220Hs. 177708ESTs3436053AI057224Hs. 15443ESTs3420968AW968775Hs. 259760ESTs3457707AW974642gb: EST386746 MAGE resequences, MAGM Homo sapi3442679R53718Hs. 107882hypothetical protein FLJ106593434016AF113698Hs. 283774clone FLB73433450330AW500775Hs. 24817hypothetical protein FLJ201363454271AW293271Hs. 255179ESTs3430382AA477908Hs. 282267ESTs3458389H70284Hs. 160152ESTs, Weakly similar to FETA_HUMAN ALPHA-FETO3413670AB000115Hs. 75470hypothetical protein, expressed in osteoblast3451253H48299Hs. 26126claudin 103442805AI201229Hs. 131262ESTs3436260BE172762Hs. 292710ESTs, Weakly similar to ALU5_HUMAN ALU SUBFAM3410099AA081630Hs. 169387KIAA0036 gene product3430552AA176374Hs. 243886nuclear autoantigenic sperm protein (histone-3452548AL050321Hs. 29846Human DNA sequence from clone 717M23 on chrom3418183NM_001772Hs. 83731CD33 antigen (gp67)3457470AB040973Hs. 272385G protein-coupled receptor 723419135R61448Hs. 106728ESTs, Weakly similar to KIAA1353 protein [H.s3448219AA228092Hs. 119569ESTs, Weakly similar to growth factor recepto3413605BE152644gb: CM1-HT0329-250200-128-f09 HT0329 Homo sapi3435106AA100847Hs. 193380ESTs, Highly similar to AF174600 1 F-box prot3410850AW362867Hs. 288699Homo sapiens cDNA: FLJ21425 fis, clone COL0413444665BE613126Hs. 47783ESTs, Weakly similar to T12540 hypothetical p3454000AA040620Hs. 109144ESTs3451644N23235Hs. 30567ESTs3445594AW058463Hs. 12940zinc-fingers and homeoboxes 13407696AI697340Hs. 76549ATPase, Na+/K+ transporting, alpha 1 polypept3432606NM_002104Hs. 3066granzyme K (serine protease, granzyme 3; tryp3435511AA683336Hs. 189046ESTs3410324AW292539Hs. 30177ESTs3429556AW139399Hs. 98988ESTs3446751AA766998Hs. 85874ESTs, Weakly similar to predicted using Genef3406038Y14443Hs. 88219zinc finger protein 2003440621AW296024Hs. 150434ESTs3444342NM_014398Hs. 10887similar to lysosome-associated membrane glyco3445715AB012958Hs. 13137UV radiation resistance associated gene3417933X02308Hs. 82962thymidylate synthetase3430929AA489166Hs. 156933ESTs3400617AF151064Hs. 36069hypothetical protein3402643c1p1_28109predicted exon410173AA706017Hs. 119944ESTs3445664AW968638Hs. 237691ESTs3437830AB020658Hs. 5867KIAA0851 protein3404287c6p3_5616predicted exon3407366AF026942gb: Homo sapiens cig33 mRNA, partial sequence.3417771AA804698Hs. 82547retinoic acid receptor responder (tazarotene3447645AW897321Hs. 159699ESTs3454038X06374Hs. 37040platelet-derived growth factor alpha polypept3442316Z75331Hs. 8217Homo sapiens cDNA: FLJ23025 fis, clone LNG0173433586T85301gb: yd78d06.s1 Soares fetal liver spleen 1NFLS3408622AA056060Hs. 202577EST cluster (not in UniGene)3428249AA130914Hs. 183291zinc finger protein 2683448019AW947164Hs. 195641ESTs3417228AL134324Hs. 7312ESTs3430219X99209Hs. 235887HMT1 (hnRNP methyltransferase, S. cerevisiae)3411060NM_006074Hs. 295978stimulated trans-acting factor (50 kDa)3406805AI686003Hs. 296031ESTs3426159Z44524Hs. 167456Homo sapiens mRNA full length insert cDNA clo3432134AI816782Hs. 122583Homo sapiens cDNA: FLJ21934 fis, clone HEP0433454314AW364844gb: QV3-DT0044-221299-045-c03 DT0044 Homo sapi3441975AW173248Hs. 250139ESTs3450937R49131Hs. 26267ATP-dependant interferon response protein 13433529AA598547Hs. 222405ESTs3454024AA993527Hs. 16281hypothetical protein FLJ234033459352AW810383Hs. 206828ESTs3444454BE018316Hs. 11183sorting nexin 23448760AA313825Hs. 21941ESTs3456328T41368gb: ph1d1_19/1TV Outward Alu-primed hncDNA lib3416803T79239Hs. 168541Homo sapiens mRNA full length insert cDNA clo3418875W19971Hs. 233459ESTs3432718AA563943Hs. 244371ESTs3456236AF045229Hs. 82280regulator of G-protein signalling 103402725c1p1_6627predicted exon3408989AW361666Hs. 49500KIAA0746 protein3430478NM_014349Hs. 241535TNF-inducible protein CG12-13436424AA716190Hs. 39056ESTs3404345AA730407Hs. 159156protocadherin 113442049AA310393Hs. 299263ESTs3454119BE549773Hs. 40510uncoupling protein 43417282AA195203Hs. 479RAB5C, member RAS oncogene family3452436BE077546Hs. 31447ESTs3410706AI732404Hs. 68846ESTs3405246cNp1_8370predicted exon3430857AW804964Hs. 248069Human BAC clone CTB-7J15 from 7q313435403AA779987Hs. 269658ESTs3447982H22953Hs. 137551ESTs3432680T47364Hs. 278613interferon, alpha-inducible protein 273452774AA047374Hs. 103388ESTs, Weakly similar to I38022 hypothetical p3417052NM_000712Hs. 81029biliverdin reductase A3448959AI610343Hs. 186355ESTs3420299AI056871Hs. 15276ESTs3409703NM_006187Hs. 560092′-5′oligoadenylate synthetase 33454413AI653672Hs. 40092ESTs3437175AW968078Hs. 87773protein kinase, cAMP-dependent, catalytic, be3437456AL047045Hs. 60293Homo sapiens clone 122482 unknown mRNA3453408AI804732Hs. 295963ESTs3436563AJ239450Hs. 157874ESTs3448901AK001021Hs. 22505hypothetical protein FLJ101593439649T64781Hs. 6618Homo sapiens cDNA FLJ20782 fis, clone COL03843453887BE564037Hs. 36237CGI-34 protein3407756AA116021Hs. 38260ubiquitin specific protease 183444222AW580955Hs. 146236ESTs3416670N69267Hs. 26073ESTs, Moderately similar to HG14_HUMAN NONHIS3418230AI917753Hs. 126639ESTs3431049AA846576Hs. 103267hypothetical protein FLJ22548 similar to gene3417787R14948Hs. 23883ESTs3421165AA284420gb: zs59c08.r1 NCI_CGAP_GCB1 Homo sapiens cDNA3433297AV658581Hs. 282633ESTs3445044AL137728Hs. 12258Homo sapiens mRNA; cDNA DKFZp434B0920 (from c3418945BE246762Hs. 89499arachidonate 5-lipoxygenase3423706U95218Hs. 131924G protein-coupled receptor 653422630AA313606Hs. 125509hypothetical protein FLJ106483416389AA180072Hs. 149846integrin, beta 53432954AI076345Hs. 214199ESTs, Weakly similar to ALUB_HUMAN !!!! ALU C3435688H72286Hs. 128387ESTs3447453AW608645Hs. 158946ESTs3454278AF217525Hs. 49002Down syndrome cell adhesion molecule3432485N90866Hs. 276770CDW52 antigen (CAMPATH-1 antigen)3442584AW976853Hs. 172843ESTs3426110NM_002913Hs. 166563replication factor C (activator 1) 1 (145 kD)3450433AW444538Hs. 231863ESTs3404085c6p1_11412predicted exon444743AA045648Hs. 11817nudix (nucleoside diphosphate linked moiety X3416503H98502Hs. 269853ESTs3421727Y13153Hs. 107318kynurenine 3-monooxygenase (kynurenine 3-hydr3458082AW978811Hs. 168213ESTs, Weakly similar to ALU1_HUMAN ALU SUBFAM3437374AL359571Hs. 12772KIAA1565 protein3428079AA421020Hs. 208919ESTs3451079AI827988Hs. 240728ESTs3408212AA297567Hs. 43728hypothetical protein3417793AW405434Hs. 82575small nuclear ribonucleoprotein polypeptide B3430697AA484207Hs. 211867ESTs3453828AW970960Hs. 293821ESTs3416784AA334592Hs. 79914lumican3445823AI478563Hs. 145519ESTs3419586AI088485Hs. 144759ESTs3440857AA907808Hs. 135556ESTs3455065AW854352gb: RC3-CT0255-200100-024-g10 CT0255 Homo sapi3450607AL050373Hs. 25213hypothetical protein3442445AA082665Hs. 209561ESTs, Weakly similar to C05E11.1 gene product3437868F05965Hs. 134441ESTs3441664AW748420Hs. 6236Homo sapiens cDNA: FLJ21487 fis, clone COL0543409461AA382169Hs. 54483N-myc (and STAT) interactor3409977AW805510Hs. 97056hypothetical protein FLJ216343446266AI417271Hs. 163949ESTs3429623NM_005308Hs. 211569G protein-coupled receptor kinase 53447540AL135716Hs. 263780ESTs3441021AW578716Hs. 7644H1 histone family, member 23448766AI473827Hs. 31793ESTs3413278BE563085Hs. 833interferon-stimulated protein, 15 kDa3450293N36754Hs. 171118Homo sapiens mRNA for FLJ00026 protein, parti3421908AW935200Hs. 243852ESTs, Weakly similar to ALU5_HUMAN ALU SUBFAM3414915NM_002462Hs. 76391myxovirus (influenza) resistance 1, homolog o3414489AI620677Hs. 154191ESTs3433637AW024214Hs. 135405ESTs3446428AW082270Hs. 210617ESTs, Weakly similar to ALU4_HUMAN ALU SUBFAM2424528AW073971Hs. 238954ESTs, Weakly similar to KIAA1204 protein [H.s2419034NM_002110Hs. 89555hemopoietic cell kinase2419138U48508Hs. 89631ryanodine receptor 1 (skeletal)2405031H25530Hs. 50868solute carrier family 22 (organic cation tran2438459T49300Hs. 35304Homo sapiens cDNA FLJ13655 fis, clone PLACE102429752H52348Hs. 36636ESTs2418827BE327311Hs. 47166EST; HT021 mRNA2423855AA331761Hs. 254859ESTs2442989BE567710gb: 601340367F1 NIH_MGC_53 Homo sapiens cDNA c2438493AI130740Hs. 6241phosphoinositide-3-kinase, regulatory subunit2420338AA825595Hs. 88269ESTs, Highly similar to GPRI_HUMAN PROBABLE G2432610BE246615Hs. 278507histidyl-tRNA synthetase-like2431629AU077025Hs. 265827interferon, alpha-inducible protein (clone IF2458752AW292842Hs. 255128ESTs2405955ph0_1394predicted exon2430320BE245290Hs. 239218uncharacterized hypothalamus protein HCDASE2441892AB028981Hs. 8021KIAA1058 protein2424030AB015046Hs. 137580xylulokinase (H. influenzae) homolog2407347AA829847Hs. 167347ESTs, Weakly similar to ALU8_HUMAN ALU SUBFAM2416517AA775987Hs. 79357proteasome (prosome, macropain) 26S subunit,2415000AW025529Hs. 239812ESTs, Weakly similar to CALM_HUMAN CALMODULIN2451652AA018968Hs. 133536ESTs2435497AW021655Hs. 194441ESTs2448554NM_016169Hs. 21431suppressor of fused2408405AK001332Hs. 44672hypothetical protein FLJ104702447769AW873704Hs. 48764ESTs2447514AI809314Hs. 208501ESTs2430291AV660345Hs. 238126CGI-49 protein2426108AA622037Hs. 166468programmed cell death 52410240AL157424Hs. 61289synaptojanin 22415579AA165232Hs. 222069ESTs2418838AW385224Hs. 35198ESTs2427528AU077143Hs. 179565minichromosome maintenance deficient (S. cere2452696AI826645Hs. 211534ESTs2459252AF043467Hs. 32893neurexophilin 22408360AI806090Hs. 44344hypothetical protein FLJ205342414511AA148725Hs. 12969hypothetical protein2422938NM_001809Hs. 1594centromere protein A (17 kD)2452670AF068227Hs. 30213ceroid-lipofuscinosis, neuronal 52407332AI801565Hs. 200113Homo sapiens cDNA FLJ11379 fis, clone HEMBA102402107c18p1_7398predicted exon413048M93221Hs. 75182mannose receptor, C type 12431863AA188185Hs. 271871Spindlin2416450AA180467Hs. 142556ESTs2419369W28557gb: 48d8 Human retina cDNA randomly primed sub2447023AA356764Hs. 17109integral membrane protein 2A2449420AI654852Hs. 196562ESTs, Highly similar to TS24 MOUSE PROTEIN TS2418721NM_002731Hs. 87773protein kinase, cAMP-dependent, catalytic, be2441941AI953261Hs. 169813ESTs2408393AW015318Hs. 23165ESTs2450746D82673Hs. 169921general transcription factor II, i, pseudogen2452598AI831594Hs. 68647ESTs, Weakly similar to ALU7_HUMAN ALU SUBFAM2427719AI393122Hs. 134726ESTs2452852AK001972Hs. 30822hypothetical protein FLJ111102440266AA088809Hs. 19525hypothetical protein FLJ227942423613AF036035Hs. 129910hyaluronoglucosaminidase 32443601AI078554Hs. 15682ESTs2432005AA524190Hs. 120777ESTs, Weakly similar to ELL2_HUMAN RNA POLYME2427794AA709186Hs. 111973ESTs2417831H16423Hs. 82685CD47 antigen (Rh-related antigen, integrin-as2435981H74319Hs. 188620ESTs2408077AL133574Hs. 42458Homo sapiens mRNA; cDNA DKFZp586C1817 (from c2426312AF026939Hs. 181874interferon-induced protein with tetratricopep2440561AA471379Hs. 7277peroxisomal biogenesis factor 32407748AL079409Hs. 38176KIAA0606 protein; SCN Circadian Oscillatory P2407213T16206Hs. 237164ESTs, Highly similar to LDHH_HUMAN L-LACTATE2449204AB000099Hs. 23251Down syndrome critical region gene 42433364AI075407Hs. 296083ESTs2419216AU076718Hs. 164021small inducible cytokine subfamily B (Cys-X-C2425987AW015005Hs. 165662KIAA0675 gene product2401263AB033113Hs. 50187KIAA1287 protein2452194AI694413Hs. 298262ESTs, Weakly similar to dJ88J8.1 [H. sapiens]2415668AW957684Hs. 77324eukaryotic translation termination factor 12401069c11p3_633predicted exon2416475T70298gb: yd26g02.s1 Soares fetal liver spleen 1NFLS2443303U67319Hs. 9216caspase 7, apoptosis-related cysteine proteas2423095S75989Hs. 123639solute carrier family 6 (neurotransmitter tra2437575AW954355Hs. 36529ESTs2458679AW975460Hs. 143563ESTs2446506AI123118Hs. 15159transmembrane proteolipid2409132AJ224538Hs. 50732protein kinase, AMP-activated, beta 2 non-cat2425508AA991551Hs. 97013ESTs2419644AU076951Hs. 91797retinoblastoma-binding protein 12427639AW444530Hs. 105362ESTs2427209H06509Hs. 92423KIAA1566 protein2423235AW410698gb: fh07h04.x1 NIH_MGC_17 Homo sapiens cDNA cl2434961AW974956gb: EST387061 MAGE resequences, MAGN Homo sapi2437594AA761431Hs. 283318ESTs2407687AK002011Hs. 37558hypothetical protein FLJ111492443119AA312264Hs. 7980ESTs, Moderately similar to ALU4_HUMAN ALU SU2446591H44186Hs. 15456PDZ domain containing 12442160AI337127Hs. 156325ESTs2406475ph2_23228predicted exon2448965AF092134Hs. 22679CGI-24 protein2424243AI949359Hs. 301837ESTs, Highly similar to cis Golgi-localized c2442048AA974603gb: op34f05.s1 Soares_NFL_T_GBC_S1 Homo sapien2412530AA766268Hs. 266273Homo sapiens cDNA FLJ13346 fis, clone OVARC102447922Z92910Hs. 20019hemochromatosis2415277R44607Hs. 22672ESTs2450770AA019924Hs. 28803ESTs2446946AI878932Hs. 317topoisomerase (DNA) I2448569BE382657Hs. 21486signal transducer and activator of transcript2427581NM_014788Hs. 179703KIAA0129 gene product2407645AW062509gb: MR0-CT0069-120899-001-b12 CT0069 Homo sapi2408179AL042465Hs. 43445poly(A)-specific ribonuclease (deadenylation2402716c1p1_6479predicted exon2447474AW614220Hs. 189402ESTs2452705H49805Hs. 246005ESTs2436643AA757626Hs. 10941ESTs, Weakly similar to IPP1_HUMAN PROTEIN PH2451625R56793Hs. 106576ESTs2448233AI478114Hs. 190615ESTs2427094AB025254Hs. 283761tudor repeat associator with PCTAIRE 22438011BE466173Hs. 145696splicing factor (CC1.3)2430024AI808780Hs. 227730integrin, alpha 62424840D79987Hs. 153479extra spindle poles, S. cerevisiae, homolog o2447547NM_007229Hs. 18842protein kinase C and casein kinase substrate2418259AA215404Hs. 137289ESTs2449119AI631195Hs. 232193ESTs2417377NM_016603Hs. 82035GAP-like protein2415535T65331gb: yc74e08.r1 Soares infant brain 1NIB Homo s2455225AW996689gb: QV3-BN0046-150400-151-g09 BN0046 Homo sapi2404015c5p1_9512predicted exon2419515S81944Hs. 90791gamma-aminobutyric acid (GABA) A receptor, al2438874H02780gb: yj41a11.r1 Soares placenta Nb2HP Homo sapi2457625T10073gb: seq1293 b4HB3MA Cot8-HAP-Ft Homo sapiens c2444151AW972917Hs. 128749alpha-methylacyl-CoA racemase2408072BE005566Hs. 16773Homo sapiens clone TCCCIA00427 mRNA sequence2423568NM_005256Hs. 129818growth arrest-specific 22455514AW983871gb: RC1-HN0003-220300-021-h07 HN0003 Homo sapi2454167AW176543gb: MR0-CT0062-200899-002-b04 CT0062 Homo sapi2414792BE314949Hs. 235775ESTs2453779N35187Hs. 43388ESTs2422932AI191813gb: qd47f06.x1 Soares_fetal_heart_NbHH19W Homo2421257BE298539Hs. 15536ESTs, Weakly similar to CNBP_HUMAN CELLULAR N2408411C15118Hs. 251967Homo sapiens clone 785627 unknown mRNA2408587AW238039Hs. 253909ESTs2405545cNp3_24204predicted exon408683R58665Hs. 46847TRAF and TNF receptor-associated protein2405392cNp3_16759predicted exon437613R19892Hs. 10267MIL1 protein2439645BE091801Hs. 27167ESTs2457498AI732230Hs. 191737ESTs2449567AI990790Hs. 188614ESTs2418791AA935633Hs. 194628ESTs2437838AI307229Hs. 184304ESTs2447735AA775268Hs. 6127Homo sapiens cDNA: FLJ23020 fis, clone LNG0092416240NM_001981Hs. 301245Homo sapiens clone 23743 mRNA sequence2424321W74048Hs. 1765lymphocyte-specific protein tyrosine kinase2452664AA398859Hs. 18397Homo sapiens cDNA: FLJ23221 fis, clone ADSU012433370AI084343Hs. 122310ESTs2439559AW364675Hs. 173921ESTs2413129AF292100Hs. 104613RP42 homolog2445786AW629819Hs. 144502Homo sapiens cDNA: FLJ22055 fis, clone HEP0962453469AB014533Hs. 33010KIAA0633 protein2458020AW515443Hs. 249495heterogeneous nuclear ribonucleoprotein A12412019AA485890Hs. 69330Homo sapiens cDNA FLJ13835 fis, clone THYRO102448873NM_003677Hs. 22393density-regulated protein2409549AB029015Hs. 54886phospholipase C, epsilon 22450669AL138077Hs. 16157hypothetical protein FLJ127072433017Y15067Hs. 279914zinc finger protein 2322435726BE535787Hs. 113170ESTs2434568AA584069Hs. 222027ESTs2402524c1p1_17748predicted exon428388AA729827Hs. 101265Homo sapiens cDNA: FLJ22593 fis, clone HSI0322453085AW954243Hs. 170218KIAA0251 protein2449082BE387561Hs. 22981DKFZP586M1523 protein2422459K02100Hs. 117050ornithine carbamoyltransferase2430007NM_014892Hs. 227602KIAA1116 protein2421494AI763322Hs. 152104ESTs2422241Y00062Hs. 170121protein tyrosine phosphatase, receptor type,2401445c14p3_4294predicted exon414747U30872Hs. 77204centromere protein F (350/400 kD, mitosin)2416980AA381133Hs. 80684high-mobility group (nonhistone chromosomal)2419270NM_005232Hs. 89839EphA12447164AF026941Hs. 17518Homo sapiens cig5 mRNA, partial sequence2452576AB023177Hs. 29900KIAA960 protein2Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Diseased Liver: Non-diseased Liver


[0336]

2







TABLE 1B








Pkey
CAT Number
Accession

















455743
1496056_1
BE073795 BE073756 BE073796 BE073754 BE073752 BE073755 BE073733 BE073753 BE073704




BE073695 BE073791


413541
1519670_1
BE147036 BE146951 BE146976 BE146966 BE146958 BE146955


410527
1030469_1
AW851066 AW851076 AW851065 AW752861 BF511007 AW851140 AW851166 AW999129 AW850779




AW850786


411466
1085200_1
AW847669 AW847667 AW847668 BE145799


447513
450115_1
AW955776 AW264910 AI401003 AI382588 D20260 N74904 H57056 R26462 AV735490


456383
250410_1
AA236756 AA287178 AI148037


450560
50855_1
NM_024331 BC003071 BM012414 BE315221 BG750119 BE272198 AL449476 BE886722 AI360302




BG002949 BM454474 AL449598 BM012506




BE383204 AA010225 AL449685 AL449684 BF742320 T06328


419375
2390505_1
W27916 W26506


410430
5482_6
BG120564 BG705653 BF846503 BF995692 BE311644


454750
1070828_1
AW866285 AW866541 AW819153 AW819000 AW819014


411857
1112533_1
AW867707 AW879403


455960
1554632_1
BE165256 BE165247 BE165239 BE165233 BE165264 BE165262 BE165261 BE165252 BE165251




BE165245 BE165203 BE165201 BE165242




BE165206 BE165175 BE165232 BE165184 BE165197 BE165194 BE165193 BE165246 BE165240 BE165186




BE165237 BE165180


442431
MH1944_19
AW886349 AI818145 BE463452 BF002624 AI360447 AI634842 AI362712 BE349856 W74084 AW014214




W72374 AA995742 R80905 R80906


433854
899720_1
BG675161 H59558 AI699484 AA610649 AI937812


431300
1529181_1
BE159863 AA502346 AU186097 R86267 H71358


410833
1061214_1
AW806900 BF373960 BF373956 AW866317 AW866524 AW866625 BF373959 AW866592


455708
1493321_1
BE069290 BE069352 BE069326


425195
12922_3
BG197420 BG219369 BG182827 AA352026


457707
114453_1
AA640546 AW974642 AA649509 AA649527


413605
1523960_1
BE152811 BE152651 BE152644 BE152659 BE152810 BE152714 BE152707 BE152643 BE152660 BE152669




BE152711 BE152808 BE152782




BE152678 BE152682 BE152813 BE152778 BF350474 BE152776 BE152781 BE152774 BF350475 BE152712




BE152706 BE152668 BE152814




BE152671 BE152652 BE152760 BE152767 BE152775 BE152815 BE152715 BE152681 BE152771 BE152661




BE152780 BE152763 BE152666




BE152708 BE152665 BE152664 BE152677 BE152662 BE152768 BE152709 BE152679 BE152667 BE152673




BE152676 BE152656 BE152769




BE152816 BE152809 BE152672 BE152653 BE152716 BE152762


433586
32908_1
BC011194 AW517087 AA601054 T85512


454314
773174_1
AW364844 AW364847 AW937534 AW937593 AW937659


456328
2306193_1
T41294 T41304 T41368 T41369


421165
50467_2
BG620396 AA428945 H89283 AA831889 AI039537 BG573209 AA284420 AI267186 H97302


455065
1094993_1
AW854352 AW854461 AW854311 AW854340


442989
1768039_1
BE567710 R02368


419369
856237_1
W28557 BG619281 W26273


416475
1972665_1
R02750 H58072 T70298 BF367306 R02749 T80873


423235
7447_1
BC016162 AK054907 BC008564 BC011232 AL533635 BF508705 AA521407 AA521325 AI400703




AI439041 BF726761 AI440391 AW451413




AI127908 BE463710 AI076067 AI380502 AI249172 AI475513 AI932260 AA598632 AW503511 BF111247




AA516001 AI435214 AW295486




AI251854 BI963232 AI242565 AI247008 AI621262 AI766708 AJ401189 NM_032595 AI523759 AW028349




AW302139 AI808223 AI475761




BE895415 BI912507 AA323578 BF951255 BF947949 AA323535 BF947948 BF448737 BF515503 BF109903




AI969706 AI356745 BF476688




AI475690 AW082861 AI056581 AI521266 AA889737 BM461771 BM129164 BI909136 BF874611 BE909797




BI755397 BI052380 BF973595




BI052420 BI012504 BF806956 BI052419 AA444012 BF848781 BF091592 AA884981


434961
121331_1
AA781075 AA654944 AW974956


442048
750422_1
AW340495 AI984319 AA974603


407645
579939_1
AW062509 AW845614 BE140931 AW845635


415535
1875630_1
T65331 F11774 F11773


455225
1113920_1
AW868687 AW996453 AW996689 AW996380 BE085650 BE085595


438874
52147_1
AF075017 R66779 R22463 H02780


457625
433710_1
H14872 T10073 AV723827 AA604786


455514
1243022_1
AW983860 BE090302 AW983845 AW983853 AW983871 AW983867 AW983852


454167
1048866_1
AW176543 AW806978 BE141056 AW806985 AW178964 AW845681


422932
9154_11
H83343 AW954934 AA417867 AA319212






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0337]

3








TABLE 1C










402811
6523646
Plus
101679-101844


403747
7658395
Minus
20493-20621


406367
9256126
Minus
58313-58489


404287
2326514
Plus
53134-53281


402725
8979991
Plus
107231-107383


405246
7249293
Minus
82725-82884


405955
6758797
Plus
39940-40092


401069
3927852
Minus
45682-45831


406475
9797684
Plus
125417-125563, 128052-128180


402716
8969253
Minus
84065-84242


404015
8655948
Minus
587821-588222






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0338]

4





TABLE 2A










ABOUT 535 GENES DOWNREGULATED IN HEPATITIS C [see 60/308, 188]











Pkey
ExAccn
UnigeneID
Title
Ratio














450912
AW939251
Hs. 25647
v-fos FBJ murine osteosarcoma viral onco
2


447078
AW885727
Hs. 301570
ESTs
2


442941
AU076728
Hs. 8867
cysteine-rich, angiogenic inducer, 61
2


419564
U08989
Hs. 91139
solute carrier family 1 (neuronal/epithe
2


447771
BE505004
Hs. 280838
ESTs
2


444286
AI625304
Hs. 190312
ESTs
2


436711
AW452601
Hs. 189907
ESTs
2


434078
AW880709
Hs. 283683
EST
2


442570
AI001834
Hs. 130264
ESTs
2


453270
AI971439
Hs. 233461
ESTs
2


410140
AL134435
Hs. 27872
ESTs
2


404839
cAp3_4046


2


418138
AA213626
Hs. 136204
EST
2


444541
AI161257
Hs. 167252
ESTs
2


408098
R61857
Hs. 120981
ESTs
2


400959
c11p1_3967


2


403397
c3p1_11672


2


440948
AW188311
Hs. 128619
ESTs
2


444648
AI221297
Hs. 147778
ESTs, Weakly similar to KIAA0454 protein
2


404723
c9p1_8723


2


451400
BE160479

gb: QV1-HT0413-210200-081-g05 HT0413 Homo
2


432228
AA335178
Hs. 274124
Human DNA sequence from clone 1018D12 on
2


415328
Z44310

gb: HSC1XF011 normalized infant brain cDN
2


445967
D59597
Hs. 118821
CGI-62 protein
2


444776
AI191980
Hs. 145430
ESTs
2


447875
R22029
Hs. 13905
ESTs
2


408834
AW276241

gb: xr08f06.x1 NCI_CGAP_Lu28 Homo sapiens
2


458099
AW263124
Hs. 34782
ESTs
2


440634
AA921767
Hs. 132447
ESTs
2


442786
H50733
Hs. 256261
ESTs
2


415477
NM_002228
Hs. 78465
v-jun avian sarcoma virus 17 oncogene ho
2


407516
X64974

gb: H. sapiens mRNA HTPCRH02 for olfactory
2


455806
BE141094

gb: MR0-HT0075-121199-004-e05 HT0075 Homo
2


421370
AA287904
Hs. 269669
ESTs
2


430737
AW364181
Hs. 208763
ESTs
2


404398
c7p3_782


2


418998
F13215
Hs. 287849
ESTs
2


426566
AF131836
Hs. 170453
tropomodulin
2


445225
AI216555
Hs. 202398
ESTs
2


455181
AW863568

gb: MR3-SN0010-240300-102-c10 SN0010 Homo
2


457752
AI821270
Hs. 116930
ESTs
2


405475
cNp3_19914


2


423167
AA770464

gb: ah89g09.s1 Soares_NFL_T_GBC_S1 Homo s
2


414559
AV656184
Hs. 76452
C-reactive protein, pentraxin-related
2


459263
L25475

gb: HUM21ES116 ClonTech HL 1065a Home sap
2


455175
AW993247

gb: RC2-BN0033-180200-014-h09 BN0033 Homo
2


454448
AW750209

gb: RC5-BT0562-260100-011-H03 BT0562 Homo
2


417566
T81449
Hs. 191199
ESTs
2


404498
c8p1_4579


2


418501
BE079398
Hs. 5921


Homo sapiens
cDNA: FLJ21592 fis, clone C

2


409113
AA074897

gb: zm85a05.r1 Stratagene ovarian cancer
2


401074
c11p3_815


2


456304
AI820973
Hs. 188706
ESTs
2


459689
AA584858

ESTs
2


423669
AA329417
Hs. 272321


Homo sapiens
cDNA FLJ12571 fis, clone NT

2


441884
AW172630
Hs. 144884
ESTs
2


441837
AA361743
Hs. 179881
core-binding factor, beta subunit
2


400371
U80740
Hs. 278692
trinucleotide repeat containing 8
2


439034
AF075083

gb: Homo sapiens full length insert cDNA
2


439075
AF085933
Hs. 292620
ESTs
2


415350
R13218

gb: yf74c05.r1 Soares infant brain 1NIB H
2


427668
AA298760
Hs. 180191


Homo sapiens
mRNA; cDNA DKFZp434L0217 (f

2


457103
AI421187
Hs. 189192
ESTs
2


433970
AA721401
Hs. 301908
ESTs
2


442314
AI311854
Hs. 129220
ESTs
2


435332
AA678019
Hs. 187994
ESTs
2


451740
R63962
Hs. 269210
ESTs
2


458198
AI286100
Hs. 192739
ESTs
2


428959
AF100779
Hs. 194680
WNT1 inducible signaling pathway protein
2


445211
BE045601
Hs. 118248
ESTs, Weakly similar to YC18_HUMAN HYPOT
2


459695
AA381579

ESTs
2


411355
AW838479
Hs. 22692
ESTs
2


401887
c17p1_704


2


406285
AW068311
Hs. 82582
integrin, beta-like 1 (with EGF-like rep
2


439201
AW503578
Hs. 209406
ESTs, Weakly similar to Z140_HUMAN ZINC
2


407760
T79084
Hs. 184407
ESTs
2


451886
T63790
Hs. 293720


Homo sapiens
cDNA: FLJ22804 fis, clone K

2


423657
AL045128
Hs. 1691
glucan (1,4-alpha-), branching enzyme 1
2


426529
AF090100
Hs. 170241


Homo sapiens
clone IMAGE 23915

2


440728
AW086077
Hs. 153272


Homo sapiens
cDNA: FLJ22715 fis, clone H

2


445061
AI253094
Hs. 145227
ESTs
2


421013
M62397
Hs. 1345
mutated in colorectal cancers
2


430873
AW269813
Hs. 154395
ESTs
2


407850
AW086230
Hs. 244912
ESTs
2


426077
AA448328
Hs. 115527
ESTs
2


419927
R53365
Hs. 20001
ESTs
2


433945
AI024718
Hs. 112873
ESTs
2


434554
R13594
Hs. 301529
ESTs
2


418625
AW948578
Hs. 136211
ESTs
2


453523
NM_012118
Hs. 258586
CCR4-like (carbon catabolite repression
2


455195
AW864370

gb: PM4-SN0016-100500-004-h09 SN0016 Homo
2


406547
ph2_5308


2


416510
H60055
Hs. 169833
single-stranded-DNA-binding protein
2


415737
AA167626
Hs. 118743
ESTs
2


431895
H60210
Hs. 272003
hemoglobin, zeta
2


402468
c1p1_13012


2


454042
H22570
Hs. 172572
hypothetical protein FLJ20093
2


401943
NM_012434
Hs. 117865
solute carrier family 17 (anion/sugar tr
2


412065
R82597
Hs. 176648
ESTs
2


444601
AV650521
Hs. 282449
ESTs
2


438247
AI018016
Hs. 131222
ESTs
2


441224
AU076964
Hs. 7753
calumenin
2


449463
AI657038
Hs. 196109
ESTs
2


451029
AA852097
Hs. 25829
ras-related protein
2


419728
L36861
Hs. 92858
guanylate cyctase activator 1A (retina)
2


436763
AI168278
Hs. 128713
ESTs
2


411861
AW867875

gb: MR0-SN0040-050500-003-f11 SN0040 Homo
2


449278
AI637876
Hs. 224372
ESTs
2


456576
AA287443

gb: zs52c10.r1 NCI_CGAP_GCB1 Homo sapiens
2


432240
AI694767
Hs. 129179
ESTs
2


447788
AI424822
Hs. 161430
ESTs
2


405278
cNp3_1070


2


408332
H91230
Hs. 234794


Homo sapiens
mRNA; cDNA DKFZp564B083 (fr

2


454442
AW816134

gb: MR3-ST0220-290100-016-e04 ST0220 Homo
2


454520
AW803371

gb: IL2-UM0079-090300-049-B06 UM0079 Homo
2


437103
AW139408
Hs. 152940
ESTs
2


458254
BE091969
Hs. 127742
ESTs
2


415075
L27479
Hs. 77889
Friedreich ataxia region gene X123
2


450577
AW612816
Hs. 202057
ESTs
2


414564
AA164803
Hs. 71994
ESTs
2


459349
AW749381

gb: QV3-BT0381-170100-060-c02 BT0381 Homo
2


450581
AF081513
Hs. 25195
endometrial bleeding associated factor
2


445239
AI217375
Hs. 170023
ESTs, Weakly similar to collagen alpha 3
2


421227
R78581
Hs. 266308
ESTs, Weakly similar to AF216312 1 type
2


432675
AI791855
Hs. 105884
ESTs
2


451831
NM_001674
Hs. 460
activating transcription factor 3
2


455104
BE064863

gb: RC1-BT0313-110300-015-f06 BT0313 Homo
2


441445
AI221959
Hs. 187937
ESTs
2


405456
cNp3_18813


2


452747
BE153855
Hs. 61460
Ig superfamily receptor LNIR precursor
2


449438
AA927317
Hs. 176719
ESTs
2


437662
AA765387
Hs. 145095
ESTs
2


443258
AF169301
Hs. 9098
sulfate transporter 1
2


448670
AW296257
Hs. 230507
ESTs
2


425426
AB021641
Hs. 157203


Homo sapiens
GIOT-1 mRNA for gonadotropi

2


446438
AI299876
Hs. 150061
ESTs
2


457005
AJ007421
Hs. 300698
ESTs, Highly similar to spalt-like zinc
2


407473
L10404

gb: Homo sapiens DNA binding protein for
2


404319
c7p1_2230


2


429836
AW117452
Hs. 99489
ESTs
2


416461
AA180526
Hs. 216797
ESTs
2


435185
AA669490
Hs. 289109
dimethylarginine dimethylaminohydrolase
2


403600
c3p1_6888


2


401775
c17p1_11738


2


424200
AA337221

gb: EST41944 Endometrial tumor Homo sapie
2


405532
cNp3_23494


2


424404
AA340151
Hs. 104650
hypothetical protein FLJ10292
2


427168
AA398821
Hs. 97548
ESTs
2


430071
AA355986
Hs. 232068
transcription factor 8 (represses interl
2


423290
AA324130

gb: EST27023 Cerebellum II Homo sapiens c
2


429295
AA682377
Hs. 99216
ESTs, Moderately similar to ALU8_HUMAN A
2


445571
AI378000
Hs. 158489
ESTs, Weakly similar to b3418.1 [H.sapie
2


432459
AW291917
Hs. 174387
ESTs
2


424584
H10692
Hs. 13310
ESTs
2


401411
c14p3_2875


2


429932
AI095005
Hs. 135174
ESTs
2


449305
AI638293

gb: tt09b07.x1 NCI_CGAP_GC6 Homo sapiens
2


413257
BE075035

gb: PM3-BT0584-260300-002-g05 BT0584 Homo
2


436062
AK000027
Hs. 98633
ESTs
2


430692
X80240

gb: H. sapiens endogenous retrovirus HERV-
2


403212
c2p1_2196


2


424686
AA345504

gb: EST51529 Gall bladder II Homo sapiens
2


413272
AA127923
Hs. 293256
ESTs
2


411658
AW855598

gb: CM1-CT0278-031199-032-e08 CT0278 Homo
2


459721
AI299050

gb: qn14d12.x1 NCI_CGAP_Lu5 Homo sapiens
2


404834
cAp3_3862


2


442484
AF075360

gb: AF075360 Human fetal liver cDNA libra
2


411689
AW857121

gb: RC1-CT0302-040400-017-a12 CT0302 Homo
2


407707
AW294785
Hs. 143895


Homo sapiens
cDNA: FLJ21140 fis, clone C

2


433430
AI863735
Hs. 186755
ESTs
2


401866
c17p1_5127


2


400352
AF227133
Hs. 272389


Homo sapiens
candidate taste receptor T2

2


444862
AI209158
Hs. 143929
ESTs
2


401558
c15p1_539


2


405698
cNp3_9135


2


427731
AA411750
Hs. 20943
ESTs
2


411486
N85785
Hs. 181165
eukaryotic translation elongation factor
2


438557
AW364104
Hs. 143509


Homo sapiens
cDNA: FLJ21924 fis, clone H

2


411902
AW875344

gb: RC1-PT0009-220300-013-f06 PT0009 Homo
2


444573
AW043590
Hs. 225023
ESTs
2


420355
AW968263
Hs. 123126
ESTs
2


418225
AA747676

gb: nx85g05.s1 NCI_CGAP_GCB1 Homo sapiens
2


404974
cNp1_15731


3


410993
BE138999
Hs. 278868
ESTs
3


410900
AW810169

gb: MR4-ST0124-040500-007-h07 ST0124 Homo
3


445626
AI400253
Hs. 156240
ESTs
3


449986
AW864502

gb: PM4-SN0016-120400-004-b12 SN0016 Homo
3


413088
BE064962

gb: RC1-BT0313-130400-016-c02 BT0313 Homo
3


441747
BE467749
Hs. 144029
ESTs, Highly similar to SOX1_HUMAN SOX-1
3


448156
AI472886

gb: tj75d01.x1 Soares_NSF_F8_9W_OT_PA_P_S
3


418298
AA256014
Hs. 86682


Homo sapiens
cDNA: FLJ21578 fis, clone C

3


404196
c6p3_1867


3


452528
AA742457
Hs. 291479
ESTs
3


451540
AI801860
Hs. 208837
ESTs
3


436893
AA736815
Hs. 149225
ESTs
3


401758
c17p1_10881


3


435633
AI248152
Hs. 270047
ESTs
3


409955
U60665
Hs. 57692
testis specific basic protein
3


440600
AI807691
Hs. 126351
ESTs
3


401946
c17p3_245


3


429668
AA626142
Hs. 179991
ESTs, Weakly similar to KPCE_HUMAN PROTE
3


424562
AI420859
Hs. 150557
basic transcription element binding prot
3


402627
c1p1_26870


3


400400
AF144054
Hs. 283886


Homo sapiens
apoptosis related protein A

3


413813
M96956
Hs. 75561
teratocarcinoma-derived growth factor 1
3


433851
AA610436
Hs. 196461
ESTs
3


432217
AI864415
Hs. 162157
ESTs, Moderately similar to B34087 hypot
3


454573
BE146471

gb: QV0-HT0216-011199-043-c09 HT0216 Homo
3


432304
AA932186
Hs. 164214
ESTs
3


458072
AI890347
Hs. 271923
EST
3


443633
AL031290
Hs. 9654
similar to pregnancy-associated plasma p
3


454697
AW813728
Hs. 15036
ESTs, Highly similar to AF161358 1 HSPC0
3


415877
R45135
Hs. 21026
ESTs
3


458943
AW249181
Hs. 19954
ESTs, Weakly similar to cDNA EST yk386e1
3


431775
AW205945
Hs. 27008
phosphatidylinositol glycan, class L
3


433391
T77201

gb: yc95c09.r1 Soares infant brain 1NIB H
3


411929
AA098880
Hs. 69297
ESTs
3


443728
AI083876
Hs. 148383
ESTs
3


449637
AA001964

gb: ze49e02.r1 Soares retina N2b4HR Homo
3


436857
AA732647

gb: nz89d01.s1 NCI_CGAP_GCB1 Homo sapiens
3


406562
ph2_6297


3


411484
AW848117

gb: IL3-CT0214-301299-048-D04 CT0214 Homo
3


456549
AA283740
Hs. 89211
ESTs
3


443751
AI285839
Hs. 153324
ESTs
3


428515
AF030339
Hs. 286229
plexin C1
3


415727
BE501389
Hs. 20848
ESTs, Weakly similar to U5 snRNP-specifi
3


453493
AL039478

gb: DKFZp434P0510_s1 434 (synonym: htes3)
3


429505
AW820035
Hs. 204290


Homo sapiens
mRNA; cDNA DKFZp586N2119 (f

3


432741
AI732358
Hs. 185118
ESTs
3


408766
AA057270

gb: zk70c03.r1 Soares_pregnant_uterus_NbH
3


455036
AW851630

gb: MR2-CT0222-211099-002-h06 CT0222 Homo
3


421036
AA810560

gb: oa71h06.s1 NCI_CGAP_GCB1 Homo sapiens
3


416584
N63864
Hs. 205554
ESTs
3


420125
AA255739
Hs. 283332
ESTs
3


434137
AA907734
Hs. 124895
ESTs
3


402747
c1p1_7488


3


457508
AA542909
Hs. 162214
ESTs
3


444927
AW016637
Hs. 199425
ESTs
3


408443
N33937
Hs. 10336
ESTs
3


408033
AW138045
Hs. 242256
ESTs
3


425560
AA359368
Hs. 165998
DKFZP564M2423 protein
3


444531
BE158822
Hs. 282469
ESTs
3


455404
BE175503

gb: RC5-HT0580-050400-021-B01 HT0580 Homo
3


458786
AI457098
Hs. 280848
ESTs
3


447034
N49580
Hs. 46630
ESTs
3


434286
AF123758
Hs. 127675
ceroid-lipofuscinosis, neuronal 8 (epile
3


400488
c10p1_1764


3


453502
AL039786

gb: DKFZp434A0912_r1 434 (synonym: htes3)
3


406225
ph0_8239


3


424554
AA747563
Hs. 131799
ESTs, Weakly similar to ALU8_HUMAN ALU S
3


409854
AW501833

gb: UI-HF-BR0p-ajo-d-01-0-UI.r1 NIH_MGC_5
3


453006
AI362575
Hs. 167133
ESTs
3


406531
ph2_4560


3


451333
AK000914
Hs. 26244
hypothetical protein FLJ10052
3


419882
AA687313
Hs. 190043
ESTs
3


432073
AW661883
Hs. 259353
ESTs
3


426420
BE383808
Hs. 169829
KIAA1180 protein
3


437089
AA844539
Hs. 240855
ESTs
3


422638
AI474074
Hs. 172070
ESTs, Weakly similar to cAMP-specific cy
3


454754
AW819191

gb: CM1-ST0283-071299-061-d08 ST0283 Homo
3


429768
AA805719
Hs. 192154
ESTs
3


445224
BE254241
Hs. 288885


Homo sapiens
cDNA FLJ14246 fis, clone OV

3


450684
AA872605
Hs. 25333
interleukin 1 receptor, type II
3


435211
AI248618
Hs. 193586
ESTs
3


419392
W28573

gb: 51f10 Human retina cDNA randomly prim
3


427624
AA406245
Hs. 24895
ESTs
3


454803
AW860148

gb: RC0-CT0379-290100-032-b10 CT0379 Homo
3


427419
NM_000200
Hs. 177888
histatin 3
3


439884
H42671

gb: yp13h12.r1 Soares breast 3NbHBst Homo
3


407438
AF227133

gb: Homo sapiens candidate taste receptor
3


427700
AA262294
Hs. 180383
dual specificity phosphatase 6
3


408602
AA055833
Hs. 58152
ESTs, Weakly similar to anagen-specific
3


405548
cNp3_24436


3


453916
AW974874
Hs. 75212
omithine decarboxylase 1
3


425611
AF012270
Hs. 158338
retinal pigment epithelium-derived rhodo
3


459238
AF053551
Hs. 31584
metaxin 2
3


454816
AW833258

gb: RC2-TT0007-131099-011-b10_1 TT0007 Ho
3


443184
AI638728
Hs. 131973
ESTs
3


407986
U32659
Hs. 41724
interleukin 17 (cytotoxic T-lymphocyte-a
3


405510
cNp3_22634


3


435118
AA665576
Hs. 116581
ESTs
3


414041
AW974100
Hs. 293265
ESTs
3


450508
R37408
Hs. 101654
ESTs
3


417699
T91491
Hs. 119670
ESTs
3


438160
AA779332
Hs. 122671
ESTs
3


423792
AW135866
Hs. 245854
ESTs
3


437208
AA236599

gb: zs42c10.r1 Soares_NhHMPu_S1 Homo sapi
3


412234
AW902641

gb: QV3-NN1024-100500-181-d08 NN1024 Homo
3


409937
AI804584
Hs. 57672
leucine rich repeat (in FLII) interactin
3


410158
AA082030

gb: zn26h08.r1 Stratagene neuroepithelium
3


408448
BE467627
Hs. 285574
ESTs
3


435308
N28276
Hs. 117087
ESTs
3


459472
AA568933

gb: nm23c07.s1 NCI_CGAP_Co10 Homo sapiens
3


430826
U10061
Hs. 248019
POU domain, class 4, transcription facto
3


403003
c21p3_2293


3


404499
c8p1_4589


3


407530
X68790

gb: H. sapiens bactericidal BPl′gene for a
3


456280
D63477
Hs. 84087
KIAA0143 protein
3


446418
AI301117
Hs. 150182
ESTs
3


420535
AA280095
Hs. 88689
ESTs
3


410815
AW805974

gb: QV1-UM0106-130400-152-b10 UM0106 Homo
3


447925
AW292271
Hs. 250718
ESTs
3


441769
R62241
Hs. 172780
ESTs
3


439889
AA848093
Hs. 192993
ESTs
3


431525
AA506656
Hs. 6185
KIAA1557 protein
3


414294
BE270795
Hs. 268864
ESTs
3


451300
AA017066
Hs. 237686
EST
3


410204
AJ243425
Hs. 738
early growth response 1
3


413939
AL047051
Hs. 199961
ESTs
3


425925
AF176813
Hs. 163045
soluble adenylyl cyclase
3


418088
R49517
Hs. 268703
ESTs
3


436681
AI288242

gb: ql80b03.x1 Soares_NhHMPu_S1 Homo sapi
3


453565
BE298808
Hs. 33363
DKFZP434N093 protein
3


420568
F09247
Hs. 167399
protocadherin alpha 5
3


444564
AI167877
Hs. 143716
ESTs
3


436317
AL096777

gb: Novel human gene mapping to chomosome
3


441299
AA927914
Hs. 223718
ESTs
3


443338
R99575

gb: yq72c01.s1 Soares fetal liver spleen
3


410286
AI739159
Hs. 61898
DKFZP586N2124 protein
3


416659
W22048

gb: 61A12 Human retina cDNA Tsp509I-cleav
3


435070
AI821270
Hs. 116930
ESTs
3


449877
BE408252
Hs. 301008
ESTs
3


401945
c17p3_241


3


452102
U04343
Hs. 27954
CD86 antigen (CD28 antigen ligand 2, B7-
3


454292
N57559
Hs. 82273
hypothetical protein
3


402718
c1p1_6495


3


441453
AW176106
Hs. 285459
ESTs, Weakly similar to unknown [D. melan
3


428785
AI015953
Hs. 125265
ESTs
3


414650
AA150435
Hs. 72063
ESTs
3


411173
R81571

gb: yj02h10.r1 Soares placenta Nb2HP Homo
3


446112
AV656599
Hs. 282636
ESTs
3


404439
c8p1_195


3


412281
AI810054
Hs. 14119
ESTs
3


432965
AW974144
Hs. 133860
ESTs
3


404632
c9p1_2941


3


459031
AA017571
Hs. 159398
ESTs
3


436195
AA774834
Hs. 75761
SFRS protein kinase 1
3


428788
AF082283
Hs. 193516
B-cell CLL/lymphoma 10
3


431512
BE270734
Hs. 2795
lactate dehydrogenase A
3


424536
AW965002
Hs. 47232
ESTs
3


443982
AI222998
Hs. 134962
ESTs
3


415120
N64464
Hs. 34950
ESTs
3


441555
AI651563
Hs. 178912
ESTs
3


419932
AA281594

gb: zt03a01.r1 NCI_CGAP_GCB1 Homo sapiens
3


422860
S67798
Hs. 121494
sperm adhesion molecule 1 (PH-20 hyaluro
3


453125
AW779544
Hs. 115497


Homo sapiens
cDNA: FLJ22655 fis, clone H

3


448306
AI480270

gb: tm26d07.x1 Soares_NFL_T_GBC_S1 Homo s
3


406284
AW068311
Hs. 82582
integrin, beta-like 1 (with EGF-like rep
3


454289
AL137554
Hs. 49927


Homo sapiens
mRNA; cDNA DKFZp434H1720 (f

3


403283
c2p1_4629


3


439541
AW970853

gb: EST382936 MAGE resequences, MAGK Homo
4


431124
AF284221
Hs. 59506
doublesex and mab-3 related transcriptio
4


435701
AW236397
Hs. 63131


Homo sapiens
cDNA FLJ13155 fis, clone NT

4


441577
AI422096

gb: tf57h05.x1 NCI_CGAP_Brn23 Homo sapien
4


429258
AA448765

gb: zx10e09.r1 Soares_total_fetus_Nb2HF8
4


432407
AA221036
Hs. 285026
HERV-H LTR-associating 1
4


422017
NM_003877
Hs. 110776
STAT induced STAT inhibitor-2
4


405591
cNp3_27585


4


439824
AW303556
Hs. 124515
ESTs
4


456370
AA234938
Hs. 87384
ESTs
4


413539
BE146879

gb: QV4-HT0222-261099-014-c11 HT0222 Homo
4


409894
BE081731

gb: QV2-BT0635-220400-158-e04 BT0635 Homo
4


440344
AA928516
Hs. 190575
ESTs
4


445180
BE217929
Hs. 147470
ESTs
4


421089
AB037771
Hs. 101799
KIAA1350 protein
4


414118
AI659167
Hs. 75968
thymosin, beta 4, X chromosome
4


405863
ph0_11166


4


432877
AW974111
Hs. 292477
ESTs
4


453043
AW136440
Hs. 224277
ESTs
4


443725
AW245680
Hs. 9701
growth arrest and DNA-damage-inducible,
4


411810
AW947513

gb: RC0-MT0002-140300-011-e04 MT0002 Homo
4


457807
N89812
Hs. 138809
Human clone 23564 mRNA sequence
4


444559
W04370
Hs. 282795
ESTs
4


401027
c11p1_812


4


402134
c19p1_1058


4


459646
AW883968

gb: QV3-OT0063-290300-135-c04 OT0063 Homo
4


420954
AA282074
Hs. 301753


Homo sapiens
cDNA FLJ11614 fis, clone HE

4


425431
T62818
Hs. 257482
ESTs
4


446104
AI571189
Hs. 55977


Homo sapiens
cDNA: FLJ20985 fis, clone C

4


410178
AA082211
Hs. 233936
myosin, light polypeptide, regulatory, n
4


441861
AA970039
Hs. 200940
ESTs
4


459045
N69101
Hs. 32703
ESTs
4


452948
AW368451
Hs. 188665
ESTs, Weakly similar to sodium-hydrogen
4


456375
AF147766
Hs. 199647


Homo sapiens
cDNA FLJ12993 fis, clone NT

4


454365
AW966728
Hs. 54642
methionine adenosyltransferase II, beta
4


435864
AL036499
Hs. 188491
ESTs
4


428799
AI478619
Hs. 104677
ESTs
4


444268
AI139642
Hs. 143239
ESTs
4


457674
AF119908
Hs. 235516
hypothetical protein PRO2955
4


434628
H47495
Hs. 13810
ESTs
4


459726
AI904506



Homo sapiens
cDNA: FLJ21802 fis, clone H

4


438524
AI824326
Hs. 22305
ESTs
4


411280
N50617

EST cluster (not in UniGene)
4


431317
AA502682

gb: ng23d01.s1 NCI_CGAP_Ov2 Homo sapiens
4


454148
AW732837
Hs. 42390
nasopharyngeal carcinoma susceptibility
4


431723
AW058350
Hs. 16762


Homo sapiens
mRNA; cDNA DKFZp564B2062 (f

4


418922
AW956580
Hs. 42699
Thrombospondin-1 (Hs. 87409)
4


426653
AA530892
Hs. 171695
dual specificity phosphatase 1
4


458032
AW979141
Hs. 293917


Homo sapiens
cDNA FLJ11774 fis, clone HE

4


412429
AV650262
Hs. 75765
GRO2 oncogene
4


421568
W85858
Hs. 99804
ESTs, Weakly similar to ALU1_HUMAN ALU S
4


413919
BE180590

gb: RC3-HT0625-130400-021-d12 HT0625 Homo
4


413576
BE149684

gb: RC1-HT0256-280300-017-d10 HT0256 Homo
4


454204
AW816498

gb: QV0-ST0236-171299-075-b02 ST0236 Homo
4


433712
AF090887

gb: Homo sapiens clone HQ0085
4


445832
AI261545

gb: qz30a07.x1 NCI_CGAP_Kid11 Homo sapien
4


404432
c8p1_1658


4


432745
AI821926
Hs. 269507
ESTs
4


405763
cXp3_1388


4


416843
D45467
Hs. 58606
ESTs
4


427608
BE148596
Hs. 179779
ribosomal protein L37
4


450594
N31036

gb: yx51g04.r1 Soares melanocyte 2NbHM Ho
4


427366
AA885108
Hs. 223806


Homo sapiens
cDNA: FLJ23157 fis, clone L

4


445772
AI733941
Hs. 145493
ESTs, Weakly similar to ALU7_HUMAN ALU S
4


404485
c8p1_4167


4


442621
AI004333
Hs. 130553
ESTs, Weakly similar to ALUA_HUMAN !!!!
4


410255
AA234006
Hs. 190488
hypothetical protein FLJ10120
4


421358
AA806749
Hs. 290346
ESTs
4


416708
H78836

gb: yu09a06.r1 Soares fetal liver spleen
4


453434
AJ271378
Hs. 140951
ESTs
4


426946
AA393595
Hs. 97446
ESTs
4


446087
AI298072
Hs. 149441
ESTs
4


453816
AL135405

gb: DKFZp762K1015_r1 762 (synonym: hmel2)
4


448588
AI970276
Hs. 156905
ESTs
4


450775
AA902384
Hs. 110248
ESTs
4


416107
AA173846
Hs. 79015
antigen identified by monoclonal antibod
4


422766
AA334108
Hs. 159572
heparan sulfate (glucosamine) 3-O-sulfot
4


454991
AW850163

gb: IL3-CT0219-271099-022-D02 CT0219 Homo
4


407528
X64990

gb: H. sapiens mRNA HTPCRX16 for olfactory
4


441910
AI150328
Hs. 226402
ESTs, Weakly similar to mitochondrial ci
4


450438
AI696071
Hs. 253800
ESTs
4


430251
AA609246
Hs. 181451
ESTs
4


440358
AW296778
Hs. 300357
ESTs, Highly similar to dJ416F21.2 [H.sa
4


409236
BE539805

gb: 601061906F1 NIH_MGC_10 Homo sapiens c
4


449335
AW150717
Hs. 296176
STAT induced STAT inhibitor 3
4


404099
c6p1_1419


4


418214
AA215293
Hs. 156004
ESTs
4


406108
ph0_2356


4


441492
AI149998
Hs. 146346
ESTs
4


458867
AW995393

gb: QV0-BN0042-170300-163-g12 BN0042 Homo
4


447283
BE061049
Hs. 258396
ESTs
4


401514
AF147186

gb: AF147186 Homo sapiens library (Schere
4


428263
AA424811
Hs. 152155
ESTs
4


434970
AW272262
Hs. 250468
ESTs
4


440882
AI205777
Hs. 129538
ESTs
4


405099
cNp1_23324


4


458960
BE383204

gb: 601298758F1 NIH_MGC_19 Homo sapiens c
4


453611
BE009728

gb: PM0-BN0173-120400-001-f09 BN0173 Homo
4


447605
AW504937
Hs. 211169
ESTs
4


436819
AA731746
Hs. 120232
ESTs
4


419134
T89863
Hs. 221771
ESTs
4


403159
c2p1_1584


4


456973
AA375710
Hs. 102746
ESTs
4


401454
c14p3_4909


4


412625
AA114946
Hs. 261314
ESTs
4


417551
AI816291
Hs. 82273
hypothetical protein
4


440962
AI989961
Hs. 233477
ESTs, Moderately similar to A Chain A, S
4


423291
NM_004129
Hs. 126590
guanylate cyclase 1, soluble, beta 2
5


417977
AA210787
Hs. 243748
ESTs
5


456667
AW665591
Hs. 114658
ESTs
5


402337
c19p3_4189


5


451838
AW005866
Hs. 193969
ESTs
5


406346
ph2_13138


5


404121
c6p1_3615


5


446698
AW451812
Hs. 202503
ESTs
5


444988
AF272830
Hs. 12229


Homo sapiens
cDNA FLJ11324 fis, clone PL

5


418443
NM_005239
Hs. 85146
v-ets avian erythroblastosis virus E26 o
5


457993
AI799102
Hs. 292732
ESTs, Weakly similar to Gab2 [H. sapiens]
5


446546
BE167687
Hs. 156628
ESTs
5


435917
AA702143
Hs. 190365
ESTs
5


413496
BE144841

gb: CM0-HT0181-181099-075-f10 HT0181 Homo
5


403661
c3p3_219


5


421177
AW070211
Hs. 102415


Homo sapiens
mRNA; cDNA DKFZp586N0121 (f

5


459660
M79082

ESTs
5


411708
AW857808

gb: RC4-CT0322-261299-011-c02 CT0322 Homo
5


411962
AA099050

gb: zk85d12.r1 Soares_pregnant_uterus_NbH
5


426087
M61877
Hs. 1985
spectrin. alpha, erythrocytic 1 (ellipto
5


416188
BE157260
Hs. 79070
v-myc avian myelocytomatosis viral oncog
5


458410
H20380
Hs. 200250
ESTs, Weakly similar to neuronal thread
5


405387
cNp3_16477


5


457873
AA736920
Hs. 288518
ESTs
5


453511
AL031224
Hs. 33102
transcription factor AP-2 beta (activati
5


438863
R38002

gb: yh97g12.r1 Soares placenta Nb2HP Homo
5


458467
AW747996
Hs. 160999
ESTs
5


447844
AI433873
Hs. 35085
ESTs
5


438675
AA813725
Hs. 213568
ESTs
5


439170
AA332365
Hs. 165539
ESTs
5


410483
BE163567

gb: QV3-HT0460-230200-101-b08 HT0460 Homo
5


401276
c13p1_293


5


430725
AA485056
Hs. 173692
ESTs
5


449834
AL161980
Hs. 24022


Homo sapiens
mRNA; cDNA DKFZp761H1023 (f

5


400827
c11p1_19707


5


425534
AA995635
Hs. 7589
ESTs
5


416493
H60593
Hs. 124990
ESTs
5


434977
AI734233
Hs. 226142
ESTs, Weakly similar to ALU7_HUMAN ALU S
5


456466
AA700127
Hs. 190504
ESTs
5


458489
AI142274
Hs. 145423
ESTs
5


433232
AI658621
Hs. 127769
ESTs
5


420270
AA257990

gb: zs35h07.r1 NcI_CGAP_GCB1 Homo sapiens
5


454410
AW812744

gb: RC3-ST0186-181099-012-c09 ST0186 Homo
5


420431
AB007131
Hs. 97624
heat shock transcription factor 2 bindin
5


400844
c11p1_20936


5


435517
AA928626
Hs. 130177
ESTs
5


412996
BE046224

gb: hn38c12.x2 NCI_CGAP_RDF2 Homo sapiens
5


420475
AW408407
Hs. 187018
ESTs
5


421126
M74587
Hs. 102122
insulin-like growth factor binding prote
5


430269
BE221682
Hs. 178364
ESTs
5


425673
R70318

gb: yj81a09.r1 Soares breast 2NbHBst Homo
5


435057
AW291345
Hs. 254970
ESTs
5


405667
cNp3_6851


5


402527
c1p1_18184


6


459407
N92114

gb: za22h11.r1 Soares fetal liver spleen
6


454302
AA306105
Hs. 50785
SEC22, vesicle trafficking protein (S. c
6


426436
AA378512
Hs. 287639


Homo sapiens
cDNA FLJ14334 fis, clone PL

6


412791
AI131192
Hs. 143199
ESTs
6


441189
AW450266
Hs. 257276
ESTs
6


456013
T92048

gb: yd54g12.s1 Soares fetal liver spleen
6


441698
BE299588
Hs. 28465


Homo sapiens
cDNA: FLJ21869 fis, clone H

6


438597
AA811662
Hs. 171497
ESTs
6


456592
R91600

gb: yq10c02.r1 Soares fetal liver spleen
6


402312
c19p3_3548


6


418912
NM_000685
Hs. 89472
angiotensin receptor 1
6


440700
AW952281
Hs. 296184
ESTs, Highly similar to GB01_HUMAN GUANI
6


424128
AW966163

gb: EST378236 MAGE resequences, MAGI Homo
7


419711
C02621
Hs. 159282
ESTs
7


444851
AL117425
Hs. 301413


Homo sapiens
cDNA FLJ11516 fis, clone HE

7


414137
BE220829
Hs. 50652
ESTs, Moderately similar toALU1_HUMAN A
7


401438
c14p3_401


7


457656
AA625087
Hs. 224405
ESTs
7


434402
AA745143
Hs. 212498
ESTs
7


413574
BE149158
Hs. 129998


Homo sapiens
cDNA FLJ14267 fis, clone PL

8


447317
BE312948
Hs. 18104
hypothetical protein FLJ11274
8


444698
AI188139
Hs. 147050
ESTs
12


430758
T91568
Hs. 270616
ESTs, Moderately similar to A34087 hypot
12


452049
BE268289
Hs. 27693
CGI-124 protein
19






Pkey: Unique Eos probeset identifier number




ExAccn: Exemplar Accession number, Genbank accession number




UnigeneID: Unigene number




Title: Gene title




R1: Non-diseased liver: Diseased Liver








[0339]

5







TABLE 2B










451400
1103195_1
BE069211 BE160479 BE160478 AI793147 AW861059


415328
1870242_1
Z44310 R55952 F05790


408834
717496_1
AW276241 BE167263 BE167259


455806
1515155_1
BE141094 BE141097 BE141263 BE141118 BE141253 BE141256 BE141225 BE141092 BE141124 BE141248 BE141254




BE141262 BE141093




BE141115 BE141259 BE141255 BE141226 BE141213 BE141222 BE141128 BE141129 BE141211 BE141157




BE141257 BE141258 BE141250




BE141116 BE141208 BE141227 BE141096 BE141112 BE141261 BE141121 BE141120 BE141300 BE141111




BE141117 BE141131 BE141212




BE141223 BE141090


455181
1106814_1
BE161696 AW863568 BE161629 BE161824


423167
879906_1
BG995664 AA322711 D79268 AA770464


459263
2049982_1
AJ003496 AJ003505 L25475


455175
1103799_1
AW993247 AW861464


454448
1028414_1
BE073941 BE073901 AW750209


409113
49403_1
AF319957 AA113914 AA131489 AA113889 AA075684 AA071047 AA126078 AA126283 AA075895 AA074583




AA070580 AA131372 AA079230




AA148748 AA120938 AA079200 AA122355 AA075041 AA071086 AA071110 AA074485 AA076151 AA070940 AA071308




AA070627 AA076622




AA079623 AA078802 AA079143 AA085188 AA079434 AA075968 AA071453 AA074159 AA076131 AA079401 AA115163




AA079329 AA069053




AA101144 AA070053 AA071087 AA102076 AA071310 AA122204 AA079659 AA063317 AA148628 AA078803 AA121103




AA076187 AA078931




AA070156 AA074198 AA070928 AA127089 AA083070 AA079280 AA134725 AA126185 AA076056 AA078833 AA084710




AA079117 AA084027




AA075042 AA129030 AA068994 AA069817 AA074897 AA079208 AA085044 AA081472 AA069220 AA071430 AA085118




AA083166 AA079450




AA074563 AA065051 AA100188 AA115929 AA064871 AA129031


459689
1272662_1
AA347192


439034
52270_1
AF075083 H52291 H52528


415350
1870780_1
T80268 R18726 Z44987 F12665 F11445 F11572 F06404 T74313 R13218 R13622


459695
817414_1
AW963571 AA381579 BG547915 H69131


455195
1107903_1
AW864319 AW864370 AW864504


411861
223814_1
BE067343 AW867875 BE067301 BE067347 BE067303 BE067304 BF851070 BE067350 BE067305 BE067306




BE067302 AW938147


456576
267535_1
AA287443 AI478347 AA419385 BE084078


454442
44916_2
AL529783 BF804681 BI858809 AW748795 AW816134 BE063456 BI911312 BG615273 AA347409


454520
825_6
BC020822 AW803378 AW803435 AW803371 BI518461 AV762185 AA298048 BI521095 AV764359 AV760834




BG548457 BI911189


459349
1027822_1
AW749381 H93337


455104
1096744_1
BF330730 BF350539 BE153665 BE065062 BE064650 BE064863 BF330763 BE153820 BE064737 BE155079




BE064651 AW856751 AW856622




BE064691 BE153674 BE153698 BE064730 BE153536


424200
890908_1
AW966196 AA337221 AA336756


423290
7964_7
AJ295991 AU138209 AV649543 BG195745 BG208133 AI458145 AW183395 AV649405 BF950906 AW962011




AW902934 AA324130 BI753806


449305
1066708_1
AW813561 AI638293


413257
1497012_1
BE075035 BE074999 BE075006 BE075008 BE075005 BE075032 BE075037


430692
60836_7
AI133594 AI064750 AW328184


424686
1228447_1
AW963243 AA345251 AA345504


411658
1095903_1
AW855645 AW855615 AW855610 BE148763 BE148764 BG951004 BG950922 BG950984 BG950998 BG950924




BG950921 BG951005 BG950995




BG950988 BG950919 AW855605 AW855608 BG950991 AW855598 AW855601 AW855596 BG950985


459721
36709_2
BE256910 AI299050 BG471673


442484
3699_10
AI110863 AF075362 AI110861 AF075360


411689
1097490_1
AW857121 AW861238 AW857123


411902
1141058_1
AW875344 AW875287 AW875285 AW875286 BF361295 AW875402 AW875400


418225
1239780_1
AW976061 AA747676 AA214595


410900
1063481_1
AW810169 AW809654 AW809839 AW810090 AW809703 AW809891 BF374636 BF374628 BF374725 AW810616




AW809733 BF374640 BF374623




AW810564


449986
2292_10
AK055879 AW007836 AA873089 N74374 AV720071 AA702706 AW055276 BE672779 AW864502 AI678780 AW864369




AI052145 T40984 N74426


413088
1489839_1
BE064856 BE064853 BE064960 BE064962 BE064857 BE064977 BE064860 BE064850 BE064815 BE064816




BE064806 BE064818 BE064796




BE064804 BE064668 BE064810 BE064979 BE064957 BE064819 BE064975 BE065059


448156
515877_1
BI495496 AW023207 BI495497 AI472886 AW023239


454573
22511_7
AW833609 AW833743 BI035140 AW821469 AW821541 AW821488 AW821531 AW821384 AW821625 AW821547




AW821549 AW821513




AW821577 BI034572 BI034365


433391
16854_1
AF038194 BG431979 BF987851 R52301 T77201


449637
34908_4
AL558074 BI914921 AV747407 AV749215 AA001964


436857
448721_1
AA732647 BE009028 BE008970


411484
1085933_1
AW848117 AW848128 AW848278 AW848401 AW848405 AW848281 AW848763


453493
470764_1
AL039478 AW970882


408766
106215_1
BG028106 BE155008 BE155007 AA057270 AA058715


455036
1091116_1
AW851708 AW851735 AW851703 AW851630 AW851712 AW851723


421036
264886_1
AW977543 AA282918


455404
703567_1
BE175503 BE175583 AW936409 AW936404


453502
1668_5
AF332192 NM_032491 BG772831 BG772873 BI460034 BI560011 BG723202 BG701021 BG720172 BI826825




BI464806 BG723004 BI559763




BI460842 BG773364 BI460208 BF377004 AL042201 BE855589 BE857075 AL044045 AA906504 AA961631




AW899993 AA885061 AW900006




AI652619 AI002078 AA983818 BG152590 BE763010 Z38801 F04136 F02320 H17003 BE762943 AI191585 N66165




BE762995 Z40423 AL039786




BI559354 BI562672 BG718512 BG720380 BI458642 BG772693 BI561299 BI459216 BF933814 R13208 Z42633 F07285




H10144 Z42852 F07873




R35183 H17002 F07362 BI459457 AL041856 BG724404 BG718143 BG701878 R50843 H10145 R40295 AW592045




BE935655 BG771671


409854
916262_1
AW502145 AW501833 AW502581


454754
1070974_1
AW819177 AW819242 AW819191 AW819175 AW819252 AW819244 AW819265 AW819269 AW819190




AW819268 AW819183 AW819246




AW819194 AW819249 AW819186 AW819180 AW819188 BE158470 AW819251 BE152602 AW819263


419392
215562_2
W28573 W27418


454803
1072913_1
BI468492 AW862380 AW860148 AW821887 AW821863 AW821894 AW821870 AW862378 AW862351


439884
10759_1
AB051476 BG289143 AV753375 AW051603 AW294678 AI435358 AI357776 AI091413 AI435427 AI367010 AI538999




AI039731 N67220 AW119213




BE326750 AI369016 T16459 R55315 AW296026 AI553628 AI537645 AI923565 BE910660 AW237341 H42671




H09709 AA847991 AA355842




BM454895 Z46035 AW195056 D63011 AI765593 BF999411 R55417 N91158 H88285 H99837 H49679 D61792




H52824 AW603615 R33635




D29082


454816
1073598_1
AW833298 AW833294 AW833272 AW833271 AW833274 AW833308 AW833275 AW833296 AW833295




AW833258 AW833306


437208
28382_1
AL110259 AA236599


412234
1160035_1
AW902569 AW902557 AW902654 AW902641 AW902650 AW902741 AW902644


410158
114375_1
BI256712 BF327164 AW936396 AW936458 AW936418 BF380035 BF368137


459472
1095076_1
AW854431 AA568933


410815
3326_23
AW805981 AW805974 AW806135 AW805972


436681
6833_1
AK021878 AU119692 AW502159 AU145969 AI393268 BE939969 AI288242 AI051978 BE677884 AI436745




AI935582 AI686473 AW861386




AA725270 BE940025 BF829279


436317
3614_2
AL096777 BM457842 AU116901 NM_021946 AK021424 AU158712 BE328021 BF765194 BF804830 BE621537 AA968672


443338
2262575_1
R99575 AI052252 R99681


416659
290122_1
W22048 W19418 H72518 BF908045


411173
881247_1
AW962014 AA324277 BI022237 AA091723 R81571


419932
3433_3
BI766402 AI365043 AA251996 N46090 AA281594


448306
50570_1
AK057289 AL601840 AL602227 BE247000 AA417150 BM150327 BM151615 BE247403 BE245780 AI480270




BE246663 BE245079 H54482




AI004637 T97117 AU157626 BE243570 AA781826 AA418396 H82937


439541
1235485_1
AW970853 N22817 AA837349


441577
17241_1
AK055721 AA399241 AI204074 AW269179 AI150462 AI422096 AA938959 AA024620 AA024498 AI751426


429258
121944_1
BG250865 AA448765 AA658293 C04967 BG988507 BG746352 C03045


413539
1519622_1
BE146879 BE146914 BE146918


409894
919627_1
AW503629 AW861738 BE081731 BE081969


411810
1107901_1
AW947513 AW864536 AW864318


459646
154497_1
AW470813 H44995 AW883968 BF746199 BF746344 BF746274 BF511374


459726
15924_1
NM_024644 AK025455 BC011350 AI240194 AA576870 AW295198 AW262665 AA968435 AA815311 AW769847




AA100496 AI796246 BI257802




AI968266 BF447872 AW341239 BE674505 AI183838 BF221583 Z40969 N64168 AI904509 AI904506 BG610839




BG107618 BG108325 BE784665




BE389806 BE390268 BF000100 AW444473 BF194857 BE843654 AW449497 BE093686 AL523620 AW402647




BI753888 BI913225 BM040984




Z45254 BF794833 BI915966 BI831226 AL523619 BG991161 BG957808 BE895148 BG469054


411280
1610_5
BF527858 AV713798 N50617 N47321 BF871615 R54159 BF741988 BF741990 BF741989 AW860545 AW835317


431317
997174_1
AW970601 AW613399 AA503435 AA502682 N91138


413919
1565718_1
BE180590 BE180585 BE180594


413576
417218_1
BG535869 BM263801 AV703254 T39786 BM263489 BE149684 T39845


454204
646158_1
AW816498 BF374419 BF374408 BF374405 AW808977 AW808605 BF334681 BF348941 BF348944 AW178676 BF374412




AW178486 BF374427




BF374429 BF348942 BF374428 BF348955 BF348940 BF348943 BF374416 BF374424 BF374431 BF374430 AW808524




BF374413 BF374418




BF334708 BF374389 BF334685 BF374473 BF374392 BF374397 BF374395 BF374407 BF374417 BF374420 BF374414




BF374422 BF374421




BF374522 BF349306 AW808532 BF374399 BF374393 BF374398 BF374394 BF374396 AW178485 BF374391




AW808816 BF374516 AW178483




AW808515 AW808791 BF374390 BF374415 AW808514 AW808379 BF374423 BF374426 BF348949 AW809007


433712
77122_3
AF090887 AI110655 AF063529


445832
437253_1
BF116098 AI261545 AW875247 N59134 AW875371


450594
82197_1
N31036 N42915 F07753 AA010329


416708
309677_1
R07686 T95204 T95230 H78836 BF932909


453816
9500_19
BG107738 BE149281 AL135405 AW891435


454991
1088900_1
AW850659 AW850532 AW850667 BE143543 AW850163 BF367228 AW850661


409236
777089_1
BE539805 BE536062 AW368376


458867
1246993_1
AW995393 AJ403118


458960
50855_1
NM_024331 BC003071 BM012414 BE315221 BG750119 BE272198 AL449476 BE886722 AI360302 BG002949




BM454474 AL449598 BM012506




BE383204 AA010225 AL449685 AL449684 BF742320 T06328


453611
1477969_1
AL045316 BF009728


413496
1517996_1
BE144708 BE144844 BE144705 BE144828 BE144815 BE144701 BE144841 BF144823 BE144836


459660
25501_86
BE072622 M79082


411708
1098544_1
AW857808 AW857817 AW857833 AW857837 AW857873


411962
2307710_1
AA099050 AA099526 T47733


438863
52130_1
AF075004 BF109017 R38002 R38003 F22027


410483
1028391_1
BE073747 AW750178 BE163567 BE073739 BE073748 BE073780 BE163491 BE163495 BE073763 BE073671




BE073689 BE073769


420270
258327_1
AW816460 AA257990 AI416981 AW500873


454410
6852_9
AW812744 AW581974 BG985054 AW812725


412996
1343199_1
BE046224 BE046730 BE046302


425673
727129_1
BG697146 AA361514 AW957439 AW298175 BI495720 R70319 AA579358 AI798179 AI633067 BG743245




AW403725 T49604 R70318


459407
1990083_1
H82757 N92114


456013
46281_8
BC015430 BG033733 T92048


456592
268841_1
AA291455 R91600 T87079


424128
890041_1
AW966163 AA335983 AA335973 AA336011 AA335668






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0340]

6








TABLE 2C








Pkey
Ref
strand
Nt_position


















404839
7109502
Minus
11386-11689


400959
7705148
Minus
129453-130097


403397
9438368
Minus
84481-84655


404723
9884767
Minus
22795-22968


404398
9802820
Minus
17421-17497, 26796-26954,





30866-30974


405475
1931025
Plus
1548-1702


404498
8151654
Plus
13292-13497


401074
3687273
Plus
72667-72812


401887
7229981
Plus
93973-94120


406547
7711513
Minus
172780-174358


402468
9797107
Minus
23969-24933


405278
6139075
Minus
3863-3965, 4823-4891, 5439-5529,





6043-6170


405456
7656676
Plus
150052-150208


404319
9211467
Plus
54436-54608


403600
8101279
Minus
3680-3838


401775
9966311
Minus
110228-110340


405532
9755485
Minus
37485-39417


401411
7799787
Minus
144144-144329


403212
7630897
Minus
156037-156210


404834
6911603
Minus
37948-38226


401866
8018106
Plus
73126-73623


401558
7139678
Plus
103510-104090


405698
4165331
Plus
54114-54225


404974
3241949
Minus
12524-13612


404196
3805917
Minus
67928-68109


401758
9910067
Minus
146471-147987


401946
4914397
Plus
85670-85752, 86415-86571,





87635-87796, 8791


402627
9931216
Plus
12136-12272, 16487-16628,





17654-17798, 1849


406562
7711584
Plus
37316-37426


402747
9212492
Minus
7105-7357


400488
8919452
Plus
97365-98784


406225
7417725
Minus
9581-10055


406531
7711474
Minus
20515-20648, 22519-22601


405548
1532158
Plus
11552-11686


405510
7630909
Minus
101028-101174


403003
5441423
Minus
79403-79560, 79712-80021


404499
8151657
Plus
19376-19909


401945
4914397
Plus
83342-83809


402718
8969253
Plus
102033-102302, 103219-103485


404439
7139680
Plus
55316-55585


404632
9796668
Plus
45096-45229


403283
8076905
Minus
71124-71996


405591
6960456
Plus
146384-146641, 147035-147160


405863
7657810
Plus
49410-49620


401027
7230983
Minus
70407-70554, 71060-71160


402134
7704979
Minus
108621-109936


404432
7407979
Minus
123536-123660


405763
5931935
Plus
274920-275019, 276641-276802


404485
8096921
Plus
75166-75264, 124036-124232


404099
8076888
Minus
127375-127477


406108
7107999
Plus
89468-89674


401514
7622355
Plus
93224-93292, 94913-95065,





95163-95334


405099
8074292
Minus
114365-114514, 128635-128831


403159
7408087
Plus
2775-2977


401454
9186923
Minus
114659-114832


402337
6957691
Plus
4116-4286, 16811-16973,





17107-17256, 19715-


406346
9255974
Plus
104359-104542


404121
9796219
Plus
59256-59401


403661
8705027
Minus
30268-30482


405387
6587915
Minus
3769-3833, 5708-5895


401276
8954274
Minus
15919-16096


400827
8570385
Plus
143937-144450


400844
9188605
Plus
24746-24872, 25035-25204


405667
4726099
Plus
5798-5914


402527
9800806
Plus
4722-4916, 17858-18037,





19964-20140, 24423-


402312
7341442
Plus
143645-143727, 147428-147514


401438
4885691
Minus
72461-72605






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0341] Tables 3A to 6C [see 60/366,782].


[0342] Table 3A lists about 1389 genes up-regulated in Hepatitis C positive liver tissues compared to Hepatitis C negative liver tissues. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wicoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of Hepatitis C positive liver tissues to the “weighted average” of Hepatitis C negative liver tissues was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the Hepatitis C positive liver tissues was set to the trimean of various different Hepatitis C positive liver tissues. The “weighted average” of the Hepatitis C negative liver tissues was set to the either 10 or the trimean of various different Hepatitis C negative liver tissues, whichever value was greater to eliminate ratios with a denominator of zero or less.
7TABLE 3AABOUT 1389 GENES UP-REGULATED IN HEPATITIS C POSITIVE LIVER TISSUESCOMPARED TO HEPATITIS C NEGATIVE LIVER TISSUESPkeyExAccnUnigeneIDUnigene TitleR1R2R3428227AA321649Hs. 2248small inducible cytokine subfamily B (Cy5.544E−0825.27278.25414004AA737033Hs. 7155ESTs, Moderately similar to 2115357A TYK1.131E−0724.52252.25417621AV654694Hs. 82316interferon-induced, hepatitis C-associat8.497E−0823.13243422746NM_004484Hs. 119651glypican 38.647E−0722.55255.75426711AA383471Hs. 343800conserved gene amplified in osteosarcoma5.544E−0820.97224.5433854AA610649Hs. 333239ESTs1.322E−0519.88191424090X99699Hs. 139262XIAP associated factor-19.289E−0617.80190448111AA053486Hs. 20315interferon-induced protein with tetratri2.262E−0715.74224.75451652AA018968Hs. 133536ESTs1.321E−0515.05149.25427283AL119796Hs. 174185ectonucleotide pyrophosphatase/phosphodi1.646E−0614.90189.75418216AA662240Hs. 283099AF15q14 protein1.494E−0714.17153.25432094AI658580Hs. 61426Homo sapiens mesenchymal stem cell prote1.322E−0513.72128.25425787AA363867Hs. 155029ESTs5.734E−0613.57151.75430200BE613337Hs. 234896geminin1.492E−0713.25122.5446094AK001760Hs. 13801KIAA1685 protein5.391E−0612.90138.5413670AB000115Hs. 75470hypothetical protein, expressed in osteo3.643E−0712.25211450937R49131Hs. 26267ATP-dependant interferon response protei8.647E−0712.07117442048AA974603gb: op34f05.s1 Soares_NFL_T_GBC_S1 Homo s1.481E−0511.92115408393AW015318Hs. 23165ESTs2.127E−0611.82130.75415443T07353Hs. 7948ESTs2.129E−0411.80115.75417308H60720Hs. 81892KIAA0101 gene product6.467E−0611.70118.75416206AW206248Hs. 111092hypothetical protein FLJ223325.441E−0711.35135.25432378AI493046Hs. 146133ESTs1.450E−0611.13107.5445823AI478563Hs. 145519FKSG87 protein3.961E−0611.00101.25447973AB011169Hs. 20141similar to S. cerevisiae SSM42.487E−0510.9799.75409153W03754Hs. 50813hypothetical protein FLJ200222.972E−0710.72118.75414052AW578849Hs. 283552ESTs, Weakly similar to unnamed protein8.090E−0710.45142.25409231AA446644Hs. 692GA733-2 antigen; epithelial glycoprotein1.871E−0510.30130.75407347AA829847gb: od40d07.s1 NCI_CGAP_GCB1 Homo sapiens2.904E−0610.0593403790NM_001334*: Homo sapiens cathepsin O (CTS1.765E−039.65103.25450293N36754Hs. 171118hypothetical protein FLJ000267.923E−059.56117.75421057T58283Homo sapiens cDNA: FLJ22063 fis, clone H2.601E−039.2785428065AI634046Hs. 157313ESTs6.525E−049.2293.25418318U47732Hs. 84072transmembrane 4 superfamily member 39.302E−059.21115451752AB032997Hs. 26966KIAA1171 protein6.383E−089.20112.75444665BE613126Hs. 47783B aggressive lymphoma gene1.641E−069.1782.25435812AA700439Hs. 188490ESTs2.485E−059.13101.75418143AA283057Hs. 266957hypothetical protein FLJ142812.732E−049.0082.5435665AI248952Hs. 12320ESTs9.212E−078.85103421282AA286914Hs. 183299ESTs3.862E−048.67102.5426793X89887Hs. 172350HIR (histone cell cycle regulation defec1.083E−038.6386.25407644D16815Hs. 37288nuclear receptor subfamily 1, group D, m2.737E−048.56115.25422546AB007969Hs. 301478KIAA0500 protein2.408E−068.5281.25429490AI971131Hs. 23889ESTs, Weakly similar to ALU7_HUMAN ALU S2.951E−058.50117442994AI026718Hs. 16954ESTs5.152E−048.4793.25416224NM_02902Hs. 79088reticulocalbin 2, EF-hand calcium bindin7.048E−078.4590.75405102C15001220*: gi|4469558|gb|AAD21311.1|(AF1.038E−038.2084.5444314AI140497gb: ow76b09.s1 Soares_fetal_liver_spleen4.679E−048.1081.25426818AA554827Hs. 340046DKFZp434A0131 protein1.358E−038.0286.5417933X02308Hs. 82962thymidylate synthetase6.228E−047.9573432954AI076345Hs. 214199ESTs1.567E−047.8876.5449541AA730673Hs. 188634ESTs3.295E−057.8570410315AI638871Hs. 17625Homo sapiens cDNA: FLJ22524 fis, clone H1.985E−067.8086446619AU076643Hs. 313secreted phosphoprotein 1 (osteopontin,3.481E−037.8083.25433586T85301Hs. 194397gb: yd78d06.s1 Soares fetal liver spleen1.417E−037.8075436995AI160015Hs. 118112ESTs3.858E−047.8071437374AL359571Hs. 44054ninein (GSK3B interacting protein)9.840E−067.7077421904BE143533Hs. 109309hypothetical protein FLJ200352.972E−077.67130.5442679R53718Hs. 107882hypothetical protein FLJ106591.048E−067.65113433401AF039698Hs. 284217serologically defined colon cancer antig1.113E−067.5583435571AF212225Hs. 283693mitochondrial ribosomal protein L11.315E−057.5579.25419175AW270037Hs. 179507KIAA0779 protein7.276E−067.5065407930AA045847Hs. 188361Homo sapiens cDNA FLJ12807 fis, clone NT5.420E−057.4792.25434263N34895Hs. 44648ESTs2.099E−037.4767.5448481W15284Hs. 74832ESTs7.876E−047.4566.25449935AA004798Hs. 108311ESTs, Weakly similar to T00351 hypotheti7.510E−057.3879407949W21874Hs. 247057ESTs, Weakly similar to 2109260A B cell7.276E−067.34126.75435102AW899053Hs. 76917F-box only protein 86.222E−047.3275.25418452BE379749Hs. 85201C-type (calcium dependent, carbohydrate-2.417E−077.3299.5425053AF046024Hs. 154320ubiquitin-activating enzyme E1C (homolog7.505E−057.3073.75436090AI640635Hs. 332879EST6.091E−037.2981.75458725AW970192Hs. 171942ras responsive element binding protein 16.048E−057.2592.25446488AB037782Hs. 15119KIAA1361 protein2.738E−047.2588.25449718AA459480Hs. 23956hypothetical protein FLJ205021.994E−067.1786418840AI821614Hs. 185831ESTs5.649E−037.1072.75408063BE086548Hs. 42346calcineurin-binding protein calsarcin-14.354E−057.05100.5436024AI800041Hs. 190555ESTs4.030E−047.0272.75447574AF162666Hs. 18895tousled-like kinase 13.903E−056.9788.75447809AW207605Hs. 164230ESTs, Highly similar to JC7266 3′,5′-cyc1.547E−066.9787424878H57111Hs. 221132ESTs2.240E−046.95105.25450016AA249590Hs. 100748ESTs, Weakly similar to A28996 prolinE-r8.224E−066.9063.75452744AI267652Hs. 246107Homo sapiens mRNA; cDNA DKFZp434E082 (fr1.969E−076.82237433230AW136134Hs. 220277ESTs1.176E−056.8099.75409052AW898179Hs. 50123zinc finger protein 1893.075E−036.8059.75434280BE005398gb: CM1-BN0116-150400-189-h02 BN0116 Homo1.650E−046.7981419586AI088485Hs. 144759ESTs, Weakly similar to I38022 hypotheti5.435E−076.7776.25422506R20909Hs. 300741sorcin1.488E−026.7770.75424941AA128376Hs. 153884ATP binding protein associated with cell5.724E−056.7762411605AW006831Hs. 145409ESTs2.596E−036.7689.25433208AW002834Hs. 24095ESTs7.123E−036.7565.5433730AK002135Hs. 3542hypothetical protein FLJ112739.472E−046.7286.5445929AI089660Hs. 323401dpy-30-like protein1.828E−046.7274.75448694AA478756Hs. 194477E3 ubiquitin ligase SMURF21.210E−046.7188.5446667BE161878Hs. 224805ESTs4.102E−036.7064.25452973H88409Hs. 93788ESTs9.463E−046.7063.25405268ENSP00000223174*: KIAA0783 PROTEIN.1.274E−046.7060423732AF058056Hs. 132183solute carrier family 16 (monocarboxylic4.464E−046.6764431214AA294921Hs. 348024v-ral simian leukemia viral oncogene horn2.707E−036.6765.25419407AW410377Hs. 41502hypothetical protein FLJ212762.125E−066.60103.75422040AA172106Hs. 110950Rag C protein1.652E−046.5860443547AW271273Hs. 23767hypothetical protein FLJ126662.117E−066.5795446493AK001389Hs. 15144hypothetical protein DKFZp564O0432.734E−046.5580.25416475T70298gb: yd26g02.s1 Soares fetal liver spleen1.091E−046.5573447541AK000288Hs. 18800hypothetical protein FLJ202812.282E−036.5563.75441976AA428403Hs. 106131ESTs1.082E−046.5562.75434375BE277910Hs. 38333′-phosphoadenosine 5′-phosphosulfate sy4.776E−066.5280408096BE250162Hs. 83765dihydrofolate reductase3.206E−036.5271.25453887BE564037Hs. 36237hypothetical protein5.688E−056.5262.75419550D50918Hs. 90998KIAA0128 protein; septin 23.397E−076.5071416133NM_001683Hs. 89512ATPase, Ca transporting, plasma membrane3.206E−036.4560.5442993BE018682Hs. 166196ATPase, Class I, type 8B, member 16.863E−066.4077.5413645AA130992gb: zo15e02.s1 Stratagene colon (937204)4.820E−036.3660.25445525BE149866Hs. 14831Homo sapiens, Similar to zinc finger pro1.120E−066.3574.5431183NM_006855Hs. 250696KDEL (Lys-Asp-Glu-Leu) endoplasmic relic8.296E−036.3561.5434474AL042936Hs. 211571holocytocbrome c synthase (cytochrome c6.345E−036.3256435029AF167706Hs. 19280cysteine-rich motor neuron 15.425E−036.3253.5409512AW979187Hs. 293591melanoma differentiation associated prot7.934E−086.27221.5426925NM_001196Hs. 315689Homo sapiens cDNA: FLJ22373 fis. clone H8363E−056.2568.25418476AA648431Hs. 37883hypothetical protein PNAS-1319.290E−056.2565421097AI280112Hs. 125232Homo sapiens cDNA FLJ13266 fis, clone OV1.543E−026.2553.5414405AI362533Hs. 306117KIAA0306 protein5.377E−066.2368451788BE242857Hs. 27021hypothetical protein FLJ111593.020E−046.2262408753AI337192Hs. 47438SH3 domain binding glutamic acid-rich pr1.764E−036.2254442045C05768Hs. 8078Homo sapiens clone FBD3 Cri-du-chat crit2.024E−046.1967.5414183AW957446Hs. 301711ESTs2.024E−046.1774.5425073W39609Hs. 22003solute carrier family 6 (neurotransmitte1.838E−036.1754.5426110NM_002913Hs. 166563replication factor C (activator 1)1(148.722E−066.1365435511AA683336Hs. 189046ESTs3.204E−036.1156.25407218AA095473Hs. 28505ubiquitin-conjugating enzyme E2H (homolo6.093E−036.1066.25422173BE385828Hs. 250619phorbolin-like protein MDS0192.582E−076.05104.5443852AI679966Hs. 150603ESTs1.692E−036.0271.25445813Z42023Hs. 106576alaninE-glyoxylate aminotransferase 2-li4.050E−046.0266413922AI535895Hs. 221024ESTs3.628E−036.0078.75440624AF017987Hs. 7306secreted frizzled-related protein 12.595E−036.0060426458D83032Hs. 169984nuclear protein2.601E−036.0057.25418791AA935633Hs. 194628ESTs4.684E−045.9989.75437629AW574774Hs. 121692ESTs1.485E−045.9851447164AF026941Hs. 17518Homo sapiens cig5 mRNA, partial sequence2.959E−075.97145.25424699AW206227Hs. 287727hypothetical protein FLJ231326.525E−045.9754.25443035Z45822Hs. 8906Homo sapiens clone 24889 mRNA sequence1.271E−045.9750.75452827AI571835Hs. 55468ESTs9.250E−065.96103431604AF175265Hs. 264190vacuolar protein sorting 35 (yeast homol2.024E−045.9562.75445943AW898533Hs. 181574ESTs3.331E−045.9560.75451122AA015767Hs. 84522ESTs4.624E−035.9553425167AA351629Hs. 225567ESTs2.237E−045.9353411252AB018549Hs. 69328MD-2 protein8.196E−065.92103.75423598BE247600Hs. 155538ESTs6.835E−045.9251431736AI912234Hs. 3297ribosomal protein S27a3.326E−045.9183.5410361BE391804Hs. 62661guanylate binding protein 1, interferon-5.384E−045.8886417228AL134324Hs. 7312ESTs2.953E−055.8863415938BE383507Hs. 78921A kinase (PRKA) anchor protein 12.218E−055.8377.25427484N32859Hs. 37288nuclear receptor subfamily 1. group D, m5.068E−065.82114443291AA325633Hs. 136102KIAA0853 protein3.022E−045.8278.5424308AW975531Hs. 154443minichramosome maintenance deficient (S.4.611E−055.8260430261AA305127Hs. 237225hypothetical protein HT0237.140E−045.8258.5447735AA775268Hs. 6127Homo sapiens cDNA: FLJ23020 fis, clone L5.114E−055.8248.75419644AU076951Hs. 91797retinoblastoma-binding protein 19.265E−065.8070.75456619AV647917Hs. 107153inhibitor of growth family, member 1-lik2.219E−055.8067.25414812X72755Hs. 77367monokine induced by gamma interferon3.893E 075.78181.75418876AA740616gb: ny97f11.s1 NCI_CGAP_GCB1 Homo sapiens1.042E−055.7577.5408360AI806090Hs. 44344hypothetical protein FLJ205341.103E−055.7559.25418224AL036057Hs. 83795interferon regulatory factor 21.482E−045.7558.25456236AF045229Hs. 82280regulator of G-protein signalling 103.860E−045.7254.25449609BE246434Hs. 289026guanine nucleotide binding protein (G pr3.658E−045.7249448554NM_016169Hs. 21431suppressor of fused7.897E−055.7249445529H14421Hs. 180513ATP-binding cassette, sub-family A (ABC17.515E−055.7061.75434210AA665612Hs. 90093ESTs1.287E−075.6799.5410577X91911Hs. 64639glioma pathogenesis-related protein1.113E−065.6795400517AF242388lengsin9.250E−065.6773.5438011BE466173Hs. 145696splicing factor (CC1.3)8.617E−045.6764.25456439AA251242Hs. 103238ESTs2.830E−035.6748421594R45689Hs. 21889Homo sapiens cDNA FLJ12978 fis, clone NT3.342E−035.6548.75408214AL120445Hs. 77823hypothetical protein FLJ213434.253E−045.6058441028AI333660Hs. 17558Homo sapiens cDNA FLJ14446 fis, clone HE8.358E−055.5958.5421650AA781795Hs. 122587ESTs3.287E−065.5795.75433037NM_014158Hs. 279938HSPC067 protein9.795E−055.5769.75409277T05558Hs. 156880ESTs1.084E−035.5762.5428172U09367Hs. 182828zinc finger protein 136 (clone pHZ-20)1.490E−045.5748.5424915R42755Hs. 23096ESTs1.565E−045.5446.5431863AA188185Hs. 289043spindlin9.265E−065.53148.5457130NM_005651Hs. 183671tryptophan 2,3-dioxygenase3.622E−035.5279431122AI267593Hs. 250535Homo sapiens mRNA; cDNA DKFZp434N2412 (f3.670E−045.5247.25413509BE145419gb: IL5-HT0198-291099-009-E01 HT0198 Homo7.118E−035.5246.75412802U41518Hs. 74602aquaporin 1 (channel-forming integral pr1.275E−045.5095.5416309R84694Hs. 79194cAMP responsive element binding protein4.750E−065.5060.5437730AW071087Hs. 239176insulin-like growth factor 1 receptor7.833E−045.5048.5410867X63556Hs. 750fibrillin 1 (Marfan syndrome)1.438E−025.5048.25431586AW971100Hs. 293189ESTs3.341E−035.4755.75420520AK001978Hs. 98510similar to rab11-binding protein2.701E−035.4755.25421633AF121860Hs. 106260sorting nexin 101.201E−025.4752.5437175AW968078Hs. 87773protein kinase, cAMP-dependent, catalyti1.735E−045.4662.5428467AK002121Hs. 184465hypothetical protein FLJ112595.146E−045.4546.75443441AW291196Hs. 92195ESTs3.555E−025.4550.5424243AI949359Hs. 339739ESTs, Highly similar to cis Golgi-locali5.416E−055.4549.75415660AI909007Hs. 78563ubiquitin-conjugating enzyme E2G 1 (homo1.596E−025.4548439008AF075072Hs. 167535ESTs, Weakly similar to ALU1_HUMAN ALU S1.297E−035.4547420789AI670057Hs. 199882ESTs4.814E−035.4546.75432388X15218Hs. 2969v-ski avian sarcoma viral oncogene homol2.734E−045.4346.5439375AA689526Hs. 344249steroid dehydrogenase homolog2.219E−0554264.75413010AA393273Hs. 75133transcription factor 6-like 1 (mitochond1.846E−035.4246.5448901AK001021Hs. 22505hypothetical protein FLJ101591.989E−065.4076.75429747M87507Hs. 2490caspase 1, apoptosis-related cysteine pr9.219E−065.4069.5453742AB037744Hs. 34892KIAA1323 protein7.173E−045.4055.5405141Y14443zinc finger protein 2001.159E−025.4044.5450206AI796450Hs. 201600ESTs2.735E−045.3847422553AI697720Hs. 171455ESTs, Weakly similar to T31613 hypotheti6.857E−065.3584408048NM_007203Hs. 42322A kinase (PRKA) anchor protein 21.240E−035.3558.75420338AA825595Hs. 88269Homo sapiens, clone MGC: 17339, mRNA, com2.123E−065.3249.5414279AW021691GCN5 (general control of ammo-acid synt1.544E−025.3056449429AA054224Hs. 59847ESTs3.076E−035.3052417688R09170Hs. 284350ESTs1.487E−045.3043.25434421AI915927Hs. 34771ESTs4.454E−045.3065.5439301AA833784Hs. 252888ESTs1.085E−035.2774.5433505AW504027Hs. 15301Homo sapiens cDNA FLJ12596 fis, clone NT6.228E−045.2751.25430556AW967807Hs. 13797ESTs1.295E−035.2672.5414737AI160386Hs. 125087ESTs2.395E−065.25108.25439971W32474Hs. 301746RAP2A, member of RAS oncogene family1.753E−065.2586.75450697AW152166Hs. 182113ESTs8.621E−045.2568419490NM_006144Hs. 90708granzyme A (granzyme 1, cytotoxic T-lymp3.208E−035.2555.5433001AF217513Hs. 279905clone HQ0310PRO0310p11.345E−045.2387.75432441AW292425Hs. 163484ESTs2.471E−045.2276449618AI076459Hs. 15978KIAA1272 protein9.832E−025.2246.75433437U20536Hs. 3280caspase 6, apoptosis-related cysteine pr1.649E−065.2092.5450916AA011597Hs. 177398ESTs7.511E−045.2094.5427699AW965076Hs. 180378hypothetical protein 6691.928E−035.2053.25421535AB002359Hs. 105478phosphoribosylformylglycinamidinesyntha6.512E−045.2044.25410511AA743475Hs. 285655ESTs2.947E−035.2043448760AA313825Hs. 21941AD036 protein2.628E−055.1966452327AK000196Hs. 29052hypothetical protein FLJ201895.424E−055.1758.25449365AW968261Hs. 118913ESTs, Moderately similar to T46371 hypot4.097E−035.1753.75413007BE046662gb: hn42f02.x1 NCI_CGAP_RDF2 Homo sapiens4.681E−045.1744.5414522AW518944Hs. 76325step II splicing factor SLU74.684E−045.16139.25451081AI078645Hs. 431murine leukemia viral (bmi-1) oncogene h2.490E−035.1549.25437834AA769294Hs. 283854gb: nz36g03.s1 NCI_CGAP_GCB1 Homo sapiens3.307E−045.1355.5458965AA010319Hs. 60389ESTs3.856E−045.1341.75442878AI868648Hs. 22315ESTs3.672E−045.1058.75410337M83822Hs. 62354cell division cycle 4-like1.652E−045.1055.75422267AB033044Hs. 114012KIAA1218 protein1.405E−045.1047.25438865H64256Hs. 167619ESTs, Moderately similar to ALUC_HUMAN!3.034E−025.1042.5438914N93892Hs. 10727ESTs5.630E−035.1043407204R41933Hs. 140237ESTs, Weakly similar to ALU1_HUMAN ALU S1.663E−055.0761.5431049AA846576Hs. 103267hypothetical protein FLJ22548 similar to7.687E−065.0755.5417355D13168Hs. 82002endothelin receptor type B5.142E−025.0745.25419522AI682428Hs. 157728ESTs8.292E−055.0548.25433697AA600357Hs. 239489TIA1 cytotoxic granule-associated RNA-bi5.421E−035.0248.25428420AL096858Hs. 184245KIAA0929 protein Msx2 interacting nuclea7.583E−075.01128.25434658AI624436Hs. 310286ESTs6.092E−065.00113.25430268AK000737Hs. 237480hypothetical protein FLJ207301.480E−035.0050.75426052N49068Hs. 93966ESTs7.107E−055.0047.25450086AW016343Hs. 233301ESTs2.491E−035.0047430512AF182294Hs. 241578U6 snRNA-associated Sm-like protein LSm81.038E−025.0044.5456034AW450979gb: UI-H-BI3-ata-a-12-0-Ul.s1 NCI_CGAP_Su9.642E−035.0040.75432606NM_002104Hs. 3066granzyme K (serine protease, granzyme 3;2.094E−054.99146.5431620AA126109Hs. 2649812′-5′-oligoadenylate synthetase 2 (69-717.389E−084.98241.75440043BE277457Hs. 30661hypothetical protein MGC46061.297E−034.9743.25427008Z45258Hs. 286013short coiled-coil protein2.785E−054.9768.5443884N20617Hs. 194397leptin receptor4.448E−034.9574.25444670H58373Hs. 332938hypothetical protein MGC53703.017E−044.9565424852AI222779Hs. 144848ESTs6.341E−034.9548450747AI064821Hs. 318535ESTs, Highly similar to 1818357A EWS gen3.670E−024.9545411360AK001601Hs. 69594high-mobility group 20A5.639E−034.9545407366AF026942Hs. 271530gb: Homo sapiens cig33 mRNA, partial sequ8.647E−074.92115.5422150AI867118Hs. 279607calpastatin1.437E−024.9242419135R61448Hs. 106728ESTs, Weakly similar to KIAA1353 protein5.724E−064.92115.75414646AA353776Hs. 901CD48 antigen (B-cell membrane protein)2.413E−064.9087.5450447AF212223Hs. 25010hypothetical protein P15-24.456E−044.9054434158T86534Hs. 14372ESTs2.190E−034.9046.75420151AA255931Hs. 186704ESTs2.209E−054.9046.75408831AF090114Hs. 48433endocrine regulator1.732E−044.9041.25449500AW956345Hs. 12926ESTs2.839E−024.9040.75418662AI801098Hs. 151500ESTs1.716E−024.8849.25416050U51903Hs. 78993IQ motif containing GTPase activating pr2.108E−024.8843451338AW612322Hs. 19131transcription factor Dp-2 (E2F dimerizat2.730E−044.8640.5449523NM_000579Hs. 54443chemokine (C-C motif) receptor 51.871E−054.8559.5423857N48902Hs. 133481Homo sapiens mRNA; cDNA DKFZp564O0862 (f1.764E−034.8258.75427384T82854gb: yd42a09.r1 Soares fetal liver spleen2.180E−024.8243.75451273NM_014811Hs. 26163KIAA0649 gene product9.414E−044.8238.25456508AA502764Hs. 123469ESTs, Weakly similar to AF208855 1 BM-011.298E−034.8155.25457584AA147979Hs. 285005mitochondrial import receptor Tom225.139E−054.8057443998AI620661Hs. 296276ESTs2.290E−034.7777454075R43826Hs. 16313Kruppel-like zinc finger protein GLIS22.100E−034.7758.5407609R43159Hs. 238432ESTs9.450E−044.7754.75424683N87519Hs. 27196ESTs1.650E−044.7752.5452820N46161Hs. 35274ESTs2.103E−034.7746.75441866BE464341Hs. 21201nectin 3; DKFZP566B0846 protein3.134E−024.7740.5429966BE081342Hs. 283037HSPC039 protein5.784E−024.7739449613N63808Hs. 34299ESTs2.725E−064.75102409703NM_006187Hs. 560092′-5′-oligoadenylate synthetase 3 (100 k5.544E−084.75441439334AI148976Hs. 112062ESTs3.154E−044.7440.25410382AW664971Hs. 259546ESTs1.207E−044.7257.75434926BE543269Hs. 50252mitochondrial ribosomal protein L321.733E−044.7257433198AA992841Hs. 27263KIAA1458 protein1.339E−024.7244435970H75410Hs. 54452zinc finger protein, subfamily 1 A, 1 (Ik5.395E−044.7046.25416647BE297139Hs. 79411replication protein A2 (32 kD)3.670E−044.6866.25409038T97490Hs. 50002small inducible cytokine subfamily A (Cy2.243E−044.68193429952AF080158Hs. 226573inhibitor of kappa light polypeptide gen3.684E−054.6767.5413048M93221Hs. 75182mannose receptor, C type 17.864E−044.6752.25425068AL048716Hs. 154387KIAA0103 gene product2.843E−024.6740.75450401AW959281Hs. 8184ESTs1.547E−034.6739.75402727NM_025065: Homo sapiens hypothetical prot1.118E−024.6755449209BE616830Hs. 294145ESTs3.170E−044.6658.5432600AI821085gb: ns95a12.y5 NCI_CGAP_Pr3 Homo sapiens2.022E−044.6584.25441892AB028981Hs. 8021KIAA1058 protein1.867E−054.6555.5407284AI539227Hs. 214039hypothetical protein FLJ235568.131E−024.6551.75450516AA902656Hs. 21943NIF3 (Ngg1 interacting factor 3, S. pombe 3.658E−044.6549426728NM_007118Hs. 171957triple functional domain (PTPRF interact6.500E−024.6441449909AA004681Hs. 59432ESTs1.767E−034.6337.25409401AI201895Hs. 181309proteasome (prosome, macropain) subunit,4.052E−044.6361450669AL138077Hs. 16157hypothetical protein FLJ127077.864E−044.6336.25408405AK001332Hs. 44672hypothetical protein FLJ104703.393E−074.61115.5451079AI827988Hs. 240728ESTs, Moderately similar to PC4259 ferri8.821E−054.6060.5408108AI580492Hs. 42743hypothetical protein5.663E−044.6047.75453555N23574Hs. 123649ESTs, Moderately similar to ALU7_HUMAN A2.764E−054.6040.25437967BE277414Hs. 5947mel transforming oncogene (derived from8.298E−034.5971.75435260H64245Hs. 34458ESTs2.194E−034.5936.75425100AF051850Hs. 154567supervillin5.865E−034.5838.5447023AA356764Hs. 17109integral membrane protein 2A6.056E−054.5792408705AA312135Hs. 46967HSPCO34 protein1.044E−064.5762.5424626AA344308Hs. 128427Homo sapiens BAC clone RP11-335J18 from1.399E−054.5761.25413786AW613780Hs. 13500ESTs1.966E−074.5760432572AI660840Hs. 191202ESTs, Weakly similar to ALUE_HUMAN !!!!7.522E−044.5580.75446927AW503484Hs. 16533myosin phosphatase, target subunit 11.596E−024.5542.25417052NM_000712Hs. 81029biliverdin reductase A5.081E−064.55110437456AL047045Hs. 60293Homo sapiens clone 122482 unknown mRNA2.477E−044.5474.25411590T96183gb: ye09f07.s1 Stratagene lung (937210) H3.777E−034.5346.75401091F07783decay accelerating factor for complement9.445E−044.5256423250BE061916Hs. 125849chromosome 8 open reading frame 21.077E−024.5249.75429732U20158Hs. 2488lymphocyte cytosolic protein 2 (SH2 doma1.292E−024.5236.25409549AB029015Hs. 54886phospholipase C, epsilon 23.841E−044.5245.75409461AA382169Hs. 54483N-myc (and STAT) interactor1.490E−074.50197451253H48299Hs. 26126claudin 109.284E−054.5092.75443119AA312264Hs. 7980hypothetical protein MGC129662.021E−044.5043423954AW753164Hs. 288604KIAA1632 protein1.241E−034.4836.5433226AW503733Hs. 9414KIAA1488 protein4.251E−044.4768.25429276AF056085Hs. 198612G protein-coupled receptor 512.232E−044.4764.75419743AW408762Hs. 5957Homo sapiens clone 24416 mRNA sequence8.609E−034.4743.75432967AA572949Hs. 207566ESTs5.637E−044.4741.75417973NM_004490Hs. 83070growth factor receptor-bound protein 141.339E−024.4740.75417954AI633943Hs. 26613ESTs, Weakly similar to no similarities3.787E−024.4739.25421654AW163267Hs. 106469suppressor of var1 (S. cerevisiae) 3-like2.178E−024.4739.25445776NM_001310Hs. 13313cAMP responsive element binding protein-1.339E−024.4735.5430008AW085625Hs. 186838ESTs, Weakly similar to Z295_HUMAN ZINC3.203E−034.4755.5421215AI868634Hs. 246358ESTs, Weakly similar to T3225tt hypotheti1.662E−054.4671.75430293AI416988Hs. 238272inositol 1,4,5-triphosphate receptor, ty1.149E−044.45104.5428342AI739168Homo sapiens cDNA FLJ13458 fis, clone PL1.107E−054.4585.5446839BE091926Hs. 16244mitotic spindle coiled-coil related prot2.947E−034.4553434941AW073202Hs. 334825Homo sapiens cDNA FLJ14752 fis, clone NT8.634E−044.4550.75421181NM_005574Hs. 184585LIM domain only 2 (rhombotin-like 1)1.845E−034.4539.25421508NM_004833Hs. 105115absent in melanoma 27.103E−054.4351.5441652BE467811Hs. 7471BBP-like protein 19.630E−034.4343.75429105D87077Hs. 196275KIAA0240 protein2.412E−024.4234.5439223AW238299Hs. 250618UL16 binding protein 21.083E−034.4241446770AV660309Hs. 154986ESTs, Weakly similar to PLLP_HUMAN PLASM7.916E−024.4245.25436535AW295687Hs. 254420ESTs1.169E−054.4059.5413243AA769266Hs. 193657ESTs2.945E−034.4052.25408461AB037756Hs. 45207hypothetical protein KIAA13356.091E−034.4036.75432873AW837268Hs. 279639Homo sapiens mRNA; cDNA DKFZp586M2022 (f1.928E−034.4034.25416701R94977Hs. 35416PRO0132 protein1.928E−034.3951.75450746D82673Hs. 278589general transcription factor II. i7.536E−074.39133.75432435BE218886Hs. 282070ESTs9.808E−054.3890.75421685AF189723Hs. 106778ATPase, Ca transporting, type 2C, member5.412E−044.3845.5419951AI653415Hs. 195789ESTs9.022E−044.3844.75424960BE245380Hs. 1539525′ nucleotidase (CD73)2.841E−024.3840.25410099AA081630KIAA0036 gene product2.038E−024.3835.25422879AI241409Hs. 188092ESTs2.021E−044.3565.75438769AA830684Hs. 163426ESTs1.419E−034.3564.75443084AI827639Hs. 125539ESTs8.228E−044.3562.75417363AW129357Hs. 329700ESTs3.627E−034.3551408162AA993833Hs. 118527ESTs8.270E−034.3533.5421379Y15221Hs. 103982small inducible cytokine subfamily B (Cy3.401E−074.34115.25414462BE622743Hs. 301064arfaptin 11.299E−034.3459.25410245C17908Hs. 194125ESTs6.345E−034.3244434666AF151103Hs. 112259T cell receptor gamma locus1.146E−044.3052.25431328AA502999Hs. 291591ESTs1.211E−044.3046452939R35348Hs. 24970ESTs, Weakly similar to B34323 GTP-bindi5.213E−034.3036.25426030BE243933Hs. 108642zinc finger protein 22 (KOX 15)2.037E−024.3038.75417819AI253112Hs. 133540ESTs5.295E−024.3036.25429922Z97630Hs. 226117H1 histone family, member 02332E−024.2948.5428255AI627478Hs. 187670ESTs5.672E−044.2844.25407690R47799Hs. 266957hypothetical protein FLJ142812.107E−074.2793.75447887AA114050Hs. 19949caspase 8, apoptosis-related cysteine pr2.465E−044.2750446751AA766998Hs. 79126Human DNA sequence from clone RP11-16L216.861E−034.2745.75432610BE246615Hs. 278507histidyl-tRNA synthetase-like8.625E−044.2738.5434198AF119849Hs. 283028hypothetical protein PRO15981.417E−034.2735.75425387AB037864Hs. 156051KIAA1443 protein3.843E−044.2735.75407309AA526438Hs. 281680peroxisomal trans 2-enoyl CoA reductase;3.682E−054.2741.75429588AI080271Hs. 134533ESTs1.693E−034.2748.25434987AW975114Hs. 293273ESTs1.297E−034.2579432195AJ243669Hs. 8127KIAA0144 gene product7.510E−054.2558433847AA610266ESTs2.477E−044.2543428720T90468Hs. 178154ESTs1.083E−034.2539.5419110AA234171Hs. 187626ESTs1.410E−044.2535.75411656AW855576gb: CM4-CT0278-221099-027-d01 CT0278 Homo2.011E−034.2532.5448071BE621584Hs. 6983Homo sapiens cDNA: FLJ22646 fis, clone H6.035E−054.2346447513AW955776Hs. 313500ESTs, Moderately similar to ALU7_HUMAN A1.118E−064.2284.75440201AL359588Hs. 7041hypothetical protein DKFZp76282261.841E−034.2242.75425272AA354138Hs. 47209ESTs, Weakly similar to C35826 hypotheti2.599E−034.2238.25453793AK002178Hs. 35225hypothetical protein FLJ113167.404E−034.2235440193AW902312Hs. 7037Homo sapiens clone 24923 mRNA sequence3.909E−024.2233.5442061AA774284Hs. 285728abl-interactor 12 (SH3-containing protei8.228E−044.2038.25402507Target Exon5.392E−044.2035.5430569AF241254Hs. 178098angiotensin I converting enzyme (peptidy5.621E−024.2035.5454067AA041455Hs. 209312ESTs2.602E−044.1844.5431966AB037903Hs. 272257Homo sapiens truncated AKR mRNA for trun1.246E−024.1840.5452032BE244005Hs. 27610retinoic acid- and interferon inducible1.737E−044.1770.25402964NM_022095*: Homo sapiens hypothetical C2H1.134E−034.1745.75436860H12751Hs. 5327PRO1914protein7.165E−044.1770.5435513AW404075Hs. 42785DC11 protein1.156E−024.1543.75447094X65232Hs. 17364zinc finger protein 79 (pT7)4.674E−044.1531.75453394AW960474Hs. 40289ESTs1.483E−054.1378.25408392U28831Hs. 44566KIAA1641 protein8.228E−044.1361.25417601NM_014735Hs. 82292KIAA0215 gene product2.475E−044.1345406423C19000229*: gi|6753826|ref|NP_034311.1|f7.487E−024.1331.25435126AI393666Hs. 42315p10-binding protein1.967E−024.1233.5416987D86957Hs. 80712KIAA0202 protein1.298E−034.1062.75433556W56321Hs. 111460calcium/calmodulin-dependent protein kin1.084E−044.1052.75414449AA557660Hs. 76152decorin1.970E−024.1046.5420000AB036063Hs. 94262p53-inducible ribonucleotide reductase s5.963E−024.1038.5418720AI381687Hs. 39526ESTs1.038E−024.1038427205Z45791Hs. 173946hypothetical protein FLJ104862.178E−024.1033410541AA065003Hs. 64179syntenin-2 protein1.038E−034.0982411400AA311919Hs. 69851nucleolar protein family A, member 1 (H/9.789E−054.0854.75422541NM_005131Hs. 1540nuclear matrix protein p842.284E−034.0837.75419943AA252111Hs. 15200ESTs2.874E−044.0860.75419195AW291165Hs. 25447ESTs1.135E−034.0751.5424939AK000059Hs. 153881Homo sapiens NY-REN-62 antigen mRNA, par5.299E−024.0639.75419590AF005043Hs. 91390poly (ADP-ribose) glycohydrolase9.272E−054.0542430468NM_004673Hs. 241519angiopoietin-like 13.204E−034.0568.5406038Y14443zinc finger protein 2001.546E−034.0567.75430522N75750Hs. 242271KIAA0471 gene product1.768E−034.0541.25424848AI263231Hs. 327090EST4.440E−034.0561.75452695AW780199Hs. 30327mitogen-activated protein kinase-activat1.480E−034.0434.25451593AF151879Hs. 26706CGI-121 protein8.336E−054.0265.5408548AA055449Hs. 63187ESTs, Weakly similar to ALUC_HUMAN !!!!1.620E−034.0238.75402439C1002445*: gi|4506787|ref|NP_003861.1|IQ3.342E−024.0232.75442202BE272862Hs. 106534hypothetical protein FLJ226251.565E−044.0064.5433233AB040927Hs. 301804KIAA1494 protein2.389E−034.0043.5407992AW418811gb: ha21a06.x1 NCI_CGAP_Kid12 Homo sapien7.959E−034.0038.25450222U75308Hs. 24644TATA box binding protein (TBP)-associate5.152E−043.9966.5432676AI187366gb: qf29c01.x1 Soares_testis_NHT Homo sap7.934E−053.9849.25427209H06509Hs. 92423KIAA1566 protein3.731E−063.98126416999AW195747Hs. 21122hypothetical protein FLJ11830 similar to1.088E−043.9756.5442485BE092285Hs. 29724hypothetical protein FLJ131874.100E−033.9752.5425395NM_014102Hs. 156243PRO1848 protein1.922E−043.9744.75424238AA337401Hs. 137635ESTs7.396E−033.9736.75400417X72475Hs. 156110Target1.903E−023.9734.75415323BE269352Hs. 949neutrophil cytosolic factor 2 (65 kD, chr7.689E−033.9649.5433017Y15067Hs. 279914zinc finger protein 2323.665E−053.9531444985AI677737Hs. 28329hypothetical protein FLJ140057.496E−043.9590.75426108AA622037Hs. 166468programmed cell death 53.032E−023.9543.5441889AI090455Hs. 268371hypothetical protein FLJ202741.001E−023.9538.5443970AI280341Hs. 166571ESTs6.136E−023.9537.75449001AI619957ESTs7.682E−033.9333427213AW007211hypothetical protein FLJ 128762.601E−033.9273.75449964AW001741Hs. 24243hypothetical protein FLJ107063.843E−043.9244.5421443BE550141Hs. 156148hypothetical protein FLJ132313.019E−043.9242.25411412AJ001388Hs. 69997zinc finger protein 2381.899E−023.9232449832AA694264Hs. 60049ESTs1.599E 023.9238419737H24185Hs. 92918hypothetical protein6.528E−043.9045.5436165AI373544Hs. 331328intermediate filament protein syncoilin7.106E−033.9042.75437862AW978107Hs. 5884Homo sapiens mRNA; cDNA DKFZp586C0224 (f1.187E−033.9040.5425210AA054679Hs. 155150ribonuclease P(14 kD)4.090E−033.9031.25442287AW952703Hs. 8182synaptic nuclei expressed gene 1b1.187E−033.8855.5439559AW364675Hs. 173921ESTs, Weakly similar to 2109260A B cell1.642E−043.8858.25450427AK001436Hs. 24994CGI-53 protein5.957E−023.8832.25421919AJ224901Hs. 109526zinc finger protein 1981.925E−043.8785.25443601AI078554Hs. 15682ESTs3.122E−053.8679.5449509AA001615Hs. 84561ESTs7.111E−033.8536.25456107AA160000Hs. 137396ESTs, Weakly similar to JC5238 galactosy1.035E−023.8530.25422550BE297626Hs. 296049microfibrillar-associated protein 42.574E−023.8551.25408683R58665Hs. 46847TRAF and TNF receptor-associated protein4.448E−073.85106426860U04953Hs. 172801isoleucine-tRNA synthetase4.619E−033.8445.5438459T49300Hs. 35304Homo sapiens cDNA FLJ13655 fis. clone PL2.088E−053.8380.75431266AW149321Hs. 105411ESTs1.090E−043.8399.75418304AA215702gb: zr97g10.r1 NCI_CGAP_GCB1 Homo sapiens7.169E−043.8248435354AA678267Hs. 117115ESTs1.968E−023.8236.75403575Target Exon6.831E−043.8230.5442961BE614474Hs. 289074F-box only protein 221.321E−053.8276.25412651AA115333Hs. 107968ESTs5.809E−073.81128.75448965AF092134Hs. 22679CGI-24 protein1.871E−053.8160.5450056BE047394Hs. 8208ESTs, Weakly similar to S71512 hypotheti7.505E−053.8171428330L22524Hs. 2256matrix metalloproleinase 7 (matrilysin,5.871E−033.8177.25428234U93553Hs. 183123nuclear receptor subfamily 5, group A, m5.142E−023.8133441646AB023169Hs. 7935KIAA0952 protein1.968E−023.8038.25402847C1000826*: gi|12314084|emb|CAC05321.1|(A1.156E−023.8031.75446207AW968535Hs. 14328hypothetical protein FLJ200711.489E−023.8034.25414658X58528Hs. 76781ATP-binding cassette, sub-family D (ALD)2.011E−033.8061.5421965AA301100Hs. 346482gb: EST14128 Testis tumor Homo sapiens cD1.663E−053.7987.25414219W20010Hs. 75823ALL1-fused gene from chromosome 1q2.180E−023.7835.5436385BE551618Hs. 144097ESTs7.990E−033.7756432689AB018320Arg/Abl-interacting protein ArgBP26.099E−033.7742.25423450AJ290445Hs. 128759KIAA0524 protein2.602E−043.7732.75429031BE002237Hs. 239666Homo sapiens cDNA FLJ13495 fis, clone PL3.071E−033.7731434526AW085147Hs. 152779ESTs4.278E−023.7730.75416039AA376989Hs. 78989alcohol dehydrogenase 5 (class III), chi3.175E−043.7772.75414915NM_002462Hs. 76391myxovirus (influenza) resistance 1, homo7.398E−083.77628.75424003BE274717Hs. 137506Homo sapiens, clone IMAGE: 3605104, mRNA,5.008E−033.7546432409AA806538Hs. 130732KIAA1575 protein1.775E−023.7536.75415736AA827082Hs. 291872ESTs5.845E−033.7536423932T95633Hs. 189703ESTs7.687E−033.7452.75434733AI334367Hs. 159337ESTs1.341E−043.7255.5420926AA830402Hs. 221216ESTs2.037E−023.7248453070AK001465Hs. 31575SEC63, endoplasmic reticulum translocon1.339E−023.7247.75426310NM_000909Hs. 169266neuropeptide Y receptor Y17.692E−033.7244.25453753BE252983Hs. 35086ubiquitin specific protease 18.588E−033.7241430016NM_004736Hs. 227656xenotropic and polytropic retrovirus rec1.598E−023.7237.5401016ENSP00000227126: NAALADASE II PROTEIN.6.847E−033.7235.5447892AI435848Hs. 172978ESTs1.246E−023.7234.25425397J04088Hs. 156346topoisomerase (DNA) II alpha (170 kD)1.599E−023.7231407756AA116021Hs. 38260ubiquitin specific protease 181.600E−073.72269.75431392AI371223Hs. 288671Homo sapiens cDNA FLJ11997 fis, clone HE1.300E−033.7260.5451658AW195351Hs. 250520ESTs, Moderately similar to I38022 hypot6.060E−053.7262.5451406AI694320Hs. 6295ESTs, Weakly similar to T17248 hypotheti9.882E−043.7156.25408216AA741038Hs. 6670ESTs1.084E−033.7058.75417848AA206581Hs. 86041ESTs, Weakly similar to JC5314 CDC28/cdc7.162E−043.7059.75434924AA443164Hs. 23259hypothetical protein FLJ134331.321E−053.7054442085AA975688Hs. 159955ESTs3.339E−033.7044.75444363AI142827Hs. 143656ESTs2.723E−043.7044433891AA613792gb: no97h03.s1 NCI_CGAP_Pr2 Homo sapiens4.811E−033.7041425423NM_005897Hs. 157180intracisternal A particle-promoted polyp1.915E−043.7036.75409493AA386192Hs. 193482Homo sapiens cDNA FLJ11903 fis, clone HE1.776E−023.7034451730AF095687Hs. 26937brain and nasopharyngeal carcinoma susce3.129E−023.7034419511AA429750Hs. 75113general transcription factor IIIA5.637E−033.7030452664AA398859Hs. 18397hypothetical protein FLJ232218.629E−073.69124.5430478NM_014349Hs. 241535apolipoprotein L, 35.537E−083.69387421406AF179897Hs. 104105Meis (mouse) homolog 25.643E−033.6851.5429686AI871613Hs. 28538Homo sapiens cDNA: FLJ21086 fis, clone C2.193E−033.6748.75429680AL035754Hs. 2474toll-like receptor 16.219E−043.6738.25423494AW504365Hs. 24143Wiskott-Aldrich syndrome protein interac3.203E−033.6735.75444545AW995346Hs. 146910ESTs1.899E−023.6730.75433907AW296107Hs. 152686ESTs5.660E−043.6763.5437650AA814338Hs. 292297ESTs7.118E−033.6738.75452279AA286844Hs. 61260hypothetical protein FLJ131647.283E−023.6536.5444969AI203334Hs. 160628ESTs9.976E−033.6537.75431560BE244135Hs. 260238hypothetical protein FLJ 108422.942E−033.6537.5425757AA363171gb: EST72986 Ovary II Homo sapiens cDNA 51.341E−043.6533433464N92481gb: zb12g02.s1Soares_fetal_lung_NbHL19W8.945E−033.6530.25446111W56338Hs. 13880CGI-143 protein2.290E−033.6535.75446506AI123118Hs. 15159chemokine-like factor, alternatively spl3.386E−073.63131436503AJ277750Hs. 183924ubiquitin associated and SH3 domain cont4.097E−033.6333.5451938AI354355Hs. 16697down-regulator of transcription 1, TBP-b1.921E−043.6369.75421114AW975051Hs. 293156ESTs, Weakly similar to I78885 serine/th4.444E−033.6368.25449720AA311152Hs. 288708hypothetical protein FLJ215624.468E−063.6363.75443373AI792868Hs. 135365ESTs4.099E−033.6349417148AA359896Hs. 293885hypothetical protein FLJ149021.837E−023.6349457231AI472022Hs. 301959proline synthetase co-transcribed (bacte3.450E−023.6332.75408380AF123050Hs. 44532diubiquitin4.434E−073.62217.25425692D90041Hs. 155956N-acetyltransferase 1 (arylamine N-acety1.760E−053.6066.5443968AA287702Hs. 10031KIAA0955 protein8.945E−033.6058.25428250AW809208Hs. 183297DKFZP566F2124 protein5.932E−043.6054407946AA226495Hs. 154292ESTs1.903E−043.6053412828AL133396Hs. 74621prion protein (p27-30) (Creutzfeld-Jakob4.990E−023.6050.25418699BE539639Hs. 173030ESTs, Weakly similar to ALU8_HUMAN ALU S4.813E−033.6043.5431416AA532718Hs. 178604ESTs8.139E−023.6037425345AU077297Hs. 155894protein tyrosine phosphatase, non-recept3.773E−033.6036.75422303AW410382Hs. 27556hypothetical protein FLJ224055.301E−023.6036.75456760AW961251Hs. 127828guanine nucleotide binding protein (G pr1.084E−033.6033434936AI285970Hs. 183817ESTs6.881E−023.5956.25448192R43915Hs. 4958ESTs4.440E−033.5831408618AK000637Hs. 46624HSPC043 protein7.694E−033.5843.25427051BE178110Hs. 173374Homo sapiens cDNA FLJ10500 fis, clone NT1.201E−023.5840430024AI808780Hs. 227730integrin, alpha 67.913E−053.5768.75424881AL119690Hs. 153618HCGVIII-1 protein2.010E−033.5740.25408438AB011180Hs. 100960KIAA0608 protein1.076E−023.5738427471AA403131Hs. 266782KIAA1826 protein2.494E−033.5734432769AA620814Hs. 144959ESTs4.558E−023.5731.25426181AA371422Hs. 334371hypothetical protein MGC130967.162E−043.5734.75439195H89360gb: yw28d08.s1 Morton Fetal Cochlea Homo4.621E−033.5741.75444020R92962Hs. 35052ESTs1.970E−023.5748.75419908AW971327Hs. 293315ESTs9.289E−033.5632427581NM_014788Hs. 179703KIAA0129 gene product1.489E−073.55117.5419440AB020689Hs. 90419KIAA0882 protein2.478E−043.5557.75409342AU077058Hs. 54089BRCA1 associated RING domain 16.528E−043.5547.25410054AL120050Hs. 58220Homo sapiens cDNA: FLJ23005 fis, clone L1.076E−023.5538437133AB018319Hs. 5460KIAA0776 protein1.774E−023.5535.25423886AA332098gb: EST36256 Embryo, 8 week I Homo sapien1.116E−023.5533432540AI821517Hs. 105866ESTs3.620E−033.5443.25402737Target Exon4.105E−053.5438.75421977W94197Hs. 110165ribosomal protein L26 homolog6.855E−023.5440418222AI675881Hs. 86538ESTs2.592E−033.5340.5418793AW382987Hs. 88474prostaglandin-endoperoxide synthase 1 (p8.283E−033.5334.75417301AI478158Hs. 164478hypothetical protein FLJ21939 similar to1.083E−033.5251412863AA121673Hs. 59757zinc finger protein 2812.250E−023.5245.25439763AA845366Hs. 184075ESTs, Weakly similar to ALU1_HUMAN ALU S1.033E−033.5242.25403809NM_024743*: Homo sapiens hypothetical pro1.490E−023.5241.75421684BE281591Hs. 106768hypothetical protein FLJ105111.117E−023.5241.75436271AW449686Hs. 129828ESTs1.563E−043.5237.25445240AI217385Hs. 147574ESTs1.599E−023.5234.5432834F06459Hs. 289113cytochrome b5 reductase 1 (B5R.1)9.286E−033.5231.75426780BE242284Hs. 172199adenylate cyclase 72.871E−043.5055.75430750AI650360Hs. 100256ESTs1.615E−033.5039.5429301AA449416Hs. 31395ESTs6.828E−043.5035418196AI745649Hs. 26549KIAA1708 protein4.422E−023.5034.5421951BE327432Hs. 109804H1 histone family, member X2.485E−033.5033.5419825AI754011Hs. 7326ESTs6.101E−033.5031.25443303U67319Hs. 9216caspase 7, apoptosis-related cysteine pr4.604E−053.4992.25451119AA805417Hs. 64753ESTs4.088E−033.4934.25431315AW972227Hs. 163986Homo sapiens cDNA: FLJ22765 fis, clone K2.951E−053.49159.25408731R85652Homo sapiens mRNA; cDNA DKFZp434F1928 (f3.690E−053.4975.25422423AF283777Hs. 116481CD72 antigen1.000E−023.4839437664AW977714Hs. 294139ESTs, Moderately similar to ALU1_HUMAN A2.497E−033.4774.25448219AA228092KIAA1681 protein9.459E−043.4756.5408784AW971350Hs. 63386ESTs2.938E−053.4746417562AW888754Hs. 134126crystallin, gamma S1.926E−033.4733.5414821M63835Hs. 77424Fc fragment of IgG, high affinity la, re1.246E−023.4736.5408088AW157022Hs. 343551hypothetical protein FLJ 225844.114E−053.4632417008AA191708Hs. 325825Homo sapiens cDNA FLJ20848 fis, clone AD2.243E−043.4664.5446238T95143Hs. 14511SCO (cytochrome oxidase deficient, yeast7.107E−053.4587446162AI631319Hs. 63841hypothetical protein DKFZp434E23182.013E−033.4541.25453686AL110326Hs. 304679ESTs, Moderately similar to Z195_HUMAN Z1.270E−043.4541.25443242BE243910Hs. 9082nucleoporin p546.587E−033.4536409939AA463437Hs. 11556Homo sapiens cDNA FLJ12566 fis, clone NT6.384E−053.4571418584NM_004606Hs. 1179TATA box binding protein (TBP)-associate1.241E−033.4437.25413129AF292100Hs. 104613RP42 homolog1.033E−043.44106.75416980AA381133Hs. 80684high-mobility group (nonhistone chromoso4.270E−033.4267.75450850AA648886Hs. 151999ESTs8.248E−043.4255.25426494AL119528Hs. 170098KIAA0372 gene product6.836E−033.4245.5417244T57053Hs. 10136ESTs2.711E−033.4233.5413392AW021404Hs. 13021ESTs2.827E−033.4233427722AK000123Hs. 180479hypothetical protein FLJ201163.233E−023.4232.75441466AW673081Hs. 54828ESTs5.005E−033.4232412675AA460716Hs. 9788hypothetical protein MGC10924 similar to1.489E−023.41415439653AW021103Hs. 6631hypothetical protein FLJ203732.954E−033.4046.25418259AA215404ESTs2.628E−053.4084423032AI684746Hs. 119274RAS p21 protein activator (GTPase activa1.413E−043.4071452167N75238Hs. 13075Homo sapiens cDNA: FLJ23013 fis, clone L4.444E−033.4037408989AW361666Hs. 49500KIAA0746 protein1.662E−053.4099.5446934AK001943Hs. 16577F-box only protein 31.768E−033.3864.25420664AI681270Hs. 99824BCE-1 protein7.518E−043.3861.5444430AI611153Hs. 6093Homo sapiens cDNA: FLJ22783 fis, clone K1.246E−023.3845.25437410AW023340Hs. 14880ESTs7.959E−033.3843.25426979AF161472Hs. 173074DKFZP564O1863 protein7.985E−033.3840.75422316N75612Hs. 301497arginyltransferase 15.639E−033.3835.75421743T35958Hs. 107614DKFZP564I1171 protein2.346E−053.3640.75418721NM_002731Hs. 87773protein kinase, cAMP-dependent, catalyti3.687E−053.3662431742NM_016652Hs. 268281crooked neck protein (crn)4.093E−033.3642.5422473U94780Hs. 117242meningioma expressed antigen 6 (coiled-c1.417E−033.3639.5452194AI694413Hs. 332649olfactory receptor, family 2, subfamily6.214E−073.36357.25436372AW972301Hs. 310286ESTs8.217E−063.36150.25444454BE018316Hs. 11183sorting nexin 23.489E−053.3552.75439717W94472Hs. 59529ESTs, Moderately similar to ALU1_HUMAN A5.865E−033.3542.25412634U55984Hs. 289088heat shock 90 kD protein 1, alpha5.358E−063.3539419970AW612022Hs. 94812ESTs3.201E−033.3535.75447514AI809314Hs. 208501ESTs, Weakly similar to B34087 hypotheti4.558E−023.3532444013T08531Hs. 44404Homo sapiens PRO1488 mRNA, complete cds7.116E−033.3531.75445718H79791Hs. 15227ESTs9.273E−063.35156.75437025AW296618Hs. 120637ESTs5.623E−023.3530.5425462AI491852Hs. 46783Homo sapiens cDNA: FLJ22382 fis, clone H1.657E−023.3431440726AL050333Hs. 7387DKFZP564B116 protein3.209E−033.3474.25417377NM_016603Hs. 82035potential nuclear protein C5ORF5; GAP li3.731E−063.3466452548AL050321Hs. 301532CRP2 binding protein1.919E−043.3354.25442853AW021276Hs. 17121ESTs7.401E−033.3331.5444745AF117754Hs. 11861thyroid hormone receptor-associated prot2.599E−043.3390.75438543AA810141Hs. 192182ESTs8.798E−053.3259.75447188H65423Hs. 17631hypothetical protein DKFZp434E21355.209E−033.3259.25454064AI130731Hs. 57967ESTs7.687E−033.3232.25433269AI343543Hs. 126890ESTs3.168E−043.3231.75407813AL120247Hs. 40109KIAA0872 protein1.105E−053.3266.25452696AI826645Hs. 211534ESTs6.450E−063.3255.75430007NM_014892Hs. 227602KIAA1116 protein5.941E−043.3259.75457247AA458605KIAA1681 protein7.702E−023.3032.25431451AA761378Hs. 192013ESTs5.298E−023.3039.5442160AI337127Hs. 156325ESTs7.713E−063.3067.75420962NM_005904Hs. 100602MAD (mothers against decapentaplegic, Dr9.242E−063.30126.25419284AW820869Hs. 215658ESTs, Moderately similar to ZN91_HUMAN Z5.450E−023.2939.5441297AW403084Hs. 7766ubiquitin-conjugating enzyme E2E 1 (homo7.876E−043.2952444030AW021254Hs. 135055ESTs2.194E−033.2753.5427675AW138190Hs. 180248zinc finger protein 124 (HZF-16)5.121E−053.2745408558AW015759Hs. 235709Homo sapiens mRNA; cDNA DKFZp667B0711 (f4.420E−023.2737.5418945BE246762Hs. 89499arachidonale 5-lipoxygenase1.143E−043.2737445733BE295568Hs. 13225UDP-Gal: betaGlcNAc beta 1,4-galactosylt6.592E−033.2737.5436139AA765786Hs. 120936ESTs1.033E−043.2662.25443405AF031463Hs. 9302phosducin-like1.145E−043.2653.75432841M93425Hs. 62protein tyrosine phosphatase, non-recept3.344E−033.2648.5449188AW072939Hs. 347187myotubularin related protein 11.757E−053.2559.75441077AI241273H5.15312ESTs9.823E−073.2576442297NM_006202Hs. 89901phosphodiesterase 4A, cAMP-specific (dun1.296E−033.2536.5449439AB029001Hs. 23585KIAA1078 protein2.409E−023.2533417665AW852858Hs. 22862ESTs1.001E−023.2532.75420174AI824144Hs. 23912ESTs2.221E−053.2547.75430929AA489166Hs. 156933ESTs3.501E−043.2255.5453128AW026516Hs. 31791acylphosphatase 2, muscle type3.777E−033.2246422932AI191813Hs. 308220ESTs1.480E−033.2235.25428004AA449563Hs. 151393glutamate-cysteine ligase, catalytic sub4.844E−023.2138.75426221AB007881Hs. 110613KIAA0421 protein6.525E−043.2158.5426312AF026939Hs. 181874interferon-induced protein with tetratri1.127E−073.20172.5417678X06560Hs. 823962′,5′-oligoadenylate synthetase 1 (40-461.973E−073.20195.5436854AA749167Hs. 173911ESTs2.285E−033.2042418180BE618087Hs. 83724hypothetical protein MGC54665.144E−023.1931.25414895AW894856Hs. 116278Homo sapiens cDNA FLJ13571 fis, clone PL9.877E−043.1946.5407765AW076027Hs. 257711ESTs, Moderately similar to ALU8_HUMAN A5.639E−033.1857.75448914AI927656Hs. 196459ESTs1.966E−023.1745.25447371AA334274Hs. 18368DKFZP564B0769 protein4.444E−033.1741.75439680AW245741Hs. 58461ESTs, Weakly similar to A35659 krueppel-1.036E−033.1733.25431188W05656Hs. 169755ESTs5.217E−033.1732.5446177AK001902Hs. 14202hypothetical protein FLJ110406.019E−053.1756.5415914AA306033Hs. 78915GA-binding protein transcription factor,3.910E−023.1738408761AA057264Hs. 238936ESTs, Weakly similar to (defline not ava2.233E−043.1748.25408050BE280478Hs. 182695hypothetical protein MGC32433.934E−033.1633444342NM_014398Hs. 10887similar to lysosome-associated membrane1.048E−073.15116.75441879AI521936Hs. 107149novel protein similar to archaeal, yeast2.630E−053.1572.25436169AA888311Hs. 17602Homo sapiens cDNA FLJ12381 fis, clone MA5.121E−053.1568.5426506AW935187Hs. 170162KIAA1357 protein5.124E−053.1566.25410390AA876905Hs. 125286ESTs4.447E−033.1563.5410614AI091195Hs. 65029growth arrest-specific 13.559E−023.1543.25407821AA346172Hs. 195614ESTs7.489E−043.1535433364AI075407Hs. 296083ESTs, Moderately similar to I54374 gene5.558E−083.15474.5408145AF182316Hs. 234680fer-1 (C. elegans)-like 3 (myoferlin)6.880E−023.1449.25411060NM_006074Hs. 318501Homo sapiens mRNA full length insert cDN9.799E−083.14238.75421272AA704157ESTs1.921E−043.1446442739NM_007274Hs. 8679cytosolic acyl coenzyme A thioester hydr6.515E−043.1442.25438021AV653790Hs. 324275WW domain-containing protein 17.183E−043.13120.25418027AB037807Hs. 83293hypothetical protein2.632E−053.1371.5443015R33261Hs. 6614ESTs, Weakly similar to A43932 mucin 2 p1.540E−023.1336.75450374AA397540Hs. 60293Homo sapiens clone 122482 unknown mRNA2.842E−023.1332.75430068AA464964gb: zx80f10.s1 Soares ovary tumor NbHOT H4.601E−053.1247.75452699AW295390Hs. 213062ESTs1.843E−033.1152.25453822NM_014116Hs. 35416PRO0132 protein7.490E−023.1139426647AA243464Hs. 294101pre-B-cell leukemia transcription factor1.084E−033.1052434629AA789081Hs. 4029glioma-amplified sequence-411.135E−033.1050.75432680T47364Hs. 278613interferon, alpha-inducible protein 275.551E−083.101337.75403738C4000675*: gi|3426332|gb|AAC32272.1|(AF01.571E−053.10108418627AL079835Hs. 86858ribosomal protein S6 kinase, 70 kD, polyp5.652E−043.0935.5457701AW855466Hs. 271866ESTs, Weakly similar to ALU1_HUMAN ALU S5.944E−043.0855.75458368BE504731Hs. 138827ESTs8.248E−043.0864.5449656AA002008Hs. 188633ESTs1.552E−033.0772.5448362AA641767Hs. 21015hypothetical protein DKFZp564L0864 simil1.117E−023.0743.5425815R94023Hs. 94560ESTs, Moderately similar to I38022 hypot2.127E−043.0738.5410851AW612147Hs. 32058Homo sapiens C1orf19 mRNA, partial cds4.627E−033.0735.5420258AA477514Hs. 96247translin-associated factor X1.387E−023.0730.5452253AA928891Hs. 28608Homo sapiens cDNA: FLJ22115 fis, clone H2.231E−043.0742.5417317AW296584Hs. 293782ESTs4.476E−063.0778408212AA297567Hs. 43728hypothetical protein3.326E−043.0747413278BE563085Hs. 833interferon-stimulated protein, 15 kDa5.558E−083.06867.25419257X53461Hs. 89781upstream binding transcription factor, R3.687E−053.0559424637NM_015057Hs. 151411KIAA0916 protein1.355E−063.0582414948C15240Hs. 182155ESTs2.485E−053.0545.5418677S83308Hs. 87224SRY (sex determining region Y)-box 51.000E−023.0541.25419465AW500239Hs. 21187Homo sapiens cDNA: FLJ23068 fis, clone L1.338E−023.0535.75443787AV646505Hs. 122155ESTs2.599E−033.0531.25438980AW502384gb: UI-HF-BR0p-aka-f-12-0-UI.r1NIH_MGC_52.102E−033.0359440668AI989538Hs. 191074ESTs1.187E−033.0355.25407687AK002011Hs. 37558hypothetical protein FLJ111497.848E−043.0337.5409977AW805510Hs. 97056hypothetical protein FLJ216342.218E−053.0274448030N30714Hs. 325960membrane-spanning 4-domains, subfamily A2.032E−023.0250.5407705AB023139Hs. 37892KIAA0922 protein1.408E−043.0249.75450205AI219748Hs. 11356ESTs6.495E−023.0247.75437086AW291411Hs. 192531ESTs, Weakly similar to S00754 zinc fing1.827E−043.0246411960R77776Hs. 18103ESTs1.416E−033.0237.25418757AI864193Hs. 169728hypothetical protein FLJ131506.852E−043.0241.5434045AI065133Hs. 152316hypothetical protein PRO09714.461E−043.0246.5414617AI339520Hs. 288817ESTs, Moderately similar to N Chain N, M1.487E−053.02183.25431709AF220185Hs. 267923uncharacterized hypothalamus protein HT02.596E−043.0142.75431341AA307211Hs. 251531proteasome (prosome, macropain) subunit,2.126E−043.0160.25409884AI904455Hs. 142684hypothetical protein DKFZp667O1163.020E−043.0068422231AA443512Hs. 101383ESTs4.601E−053.0065418460M26315Hs. 85258CD8 antigen, alpha polypeptide (p32)1.147E−043.0063446851AW007332Hs. 10450Homo sapiens cDNA: FLJ22063 fis, clone H8.341E−053.0049411127AA668995Hs. 218329hypothetical protein4.090E−033.0035.5432474AA584042gb: nn65e09.s1 NCI_CGAP_Lar1 Homo sapiens1.596E−023.0034.75451171AA248829Hs. 112921gb: jj6059.seq.F Human fetal heart, Lambd9.877E−043.0033.5418182AW016405Hs. 16648ESTs1.239E−033.0033414033AL079707Hs. 207443hypothetical protein MGC108481.930E−033.0031.5431542H63010Hs. 5740ESTs1.117E−023.0031414493AL133921Hs. 76272retinoblastoma-binding protein 21.662E−052.9990.25428418AI368826Hs. 30654ESTs1.321E−052.9985.75431629AU077025Hs. 265827interferon, alpha-inducible protein (clo8.507E−082.99674.75439658AA332057Hs. 6639hypothetical protein MGC154407.495E−052.9947.75425332AA633306Hs. 127279ESTs6.333E−032.9940.25410678BE540516Hs. 293732hypothetical protein MGC31957.522E−042.9854452420BE564871Hs. 29463centrin, EF-hand protein, 3 (CDC31 yeast4.480E−062.9769.75451572AA018556Hs. 268691ESTs, Moderately similar to ALU2_HUMAN A2.219E−052.9752.5411190AA306342Hs. 69171protein kinase C-like 28.296E−032.9746444437AI377961Hs. 44041ESTs6.592E−032.9734425548AA890023Hs. 1906prolactin receptor5.657E−042.9739413568AA130381Hs. 180257ESTs2.938E−052.9745.25419925AA159850Hs. 93765lipoma HMGIC fusion partner3.790E−022.9742.75446215AW821329Hs. 14368SH3 domain binding glutamic acid-rich pr2.391E−032.9650425907AA365752Hs. 155965ESTs3.236E−022.9636.25418679D38552Hs. 1191KIAA0073 protein4.611E−032.9635.25439776AL360140Hs. 176005Homo sapiens mRNA full length insert cDN2.008E−032.9633.75446006NM_004403Hs. 13530deafness, autosomal dominant 55.005E−032.9643.5434822AW076088Hs. 4187hypothetical protein 246363.115E−052.9582437275AW976035Hs. 292396ESTs, Weakly similar to A47582 B-cell gr1.084E−032.9549.75439601AB029032Hs. 6606KIAA1109 protein4.808E−032.9536.25403707Target Exon9.630E−032.9533.75437613R19892Hs. 10267MIL1 protein2.942E−032.9530.5458455AV648310Hs. 213488ESTs2.098E−032.9546.25450256AA286887Hs. 24724MFH-amplified sequences with leucine-ric3.687E−052.94101442053R35343Hs. 24968Human DNA sequence from clone RP1-233G161.689E−032.9450448569BE382657Hs. 21486signal transducer and activator of trans5.551E−082.94419.75414792BE314949Hs. 87128hypothetical protein FLJ233091.177E−062.9386.25427794AA709186Hs. 99070ESTs1.290E−022.9345.25446552AW470827Hs. 156241ESTs1.086E−042.9292.5441969AI733386Hs. 129194ESTs, Weakly similar to ALU1_HUMAN ALU S1.821E−042.9265.75451644N23235Hs. 30567ESTs, Weakly similar to B34087 hypotheti2.212E−052.9252.25423129L44396Hs. 124106Homo sapiens cDNA FLJ11941 fis, clone HE2.600E−032.9246.75418522AA605038Hs. 7149Homo sapiens cDNA: FLJ21950 fis, clone H4.043E−042.9242426279AI648520Hs. 169084tubby like protein 31.598E−022.9235.75409444H47933Hs. 33983ESTs, Weakly similar to ALU6_HUMAN ALU S5.389E−042.9233.5445939BE018658Hs. 141003Homo sapiens cDNA: FLJ21691 fis, clone C4.991E−022.9232417788AI436699Hs. 84928nuclear transcription factor Y, beta1.116E−022.9230415023AA932146Hs. 133494Homo sapiens clone TCCCIA00164 mRNA sequ4.037E−042.9238452866R26969Hs. 268016Homo sapiens cDNA: FLJ21243 fis, clone C1.845E−032.9250.5457000NM_006750Hs. 172278syntrophin, beta 2 (dystrophin-associate5.420E−032.9230.25423568NM_005256Hs. 129818growth arrest-specific 22.024E−042.9284454000AA040620Hs. 5672hypothetical protein AF1402251.078E−022.9275.25409600AJ011679Hs. 55099rab6 GTPase activating protein (GAP and2.212E−052.9156432451AW972771Hs. 292471ESTs, Weakly similar to ALU1_HUMAN ALU S3.668E−022.9138.75419126AI810144Hs. 135276ESTs6.101E−032.9135.75428974AA442693Hs. 272006ESTs, Weakly similar to I38022 hypotheti7.753E−062.90100440945AW505345Hs. 7540f-box and leucine-rich repeat protein 3A5.624E−022.9053.25439024R96696Hs. 35598ESTs2.750E−022.9091.25426126AL118747Hs. 26691ESTs3.163E−042.9057428738NM_000380Hs. 192803xeroderma pigmentosum, complementation g3.499E−042.9056.25403743C1002604: gi|8393668|ref|NP_058989.1|kin7.116E−032.9049.25437108AA434054Hs. 80624hypothetical protein MGC25605.406E−032.9047.5407816AW500857Hs. 40137anaphase-promoting complex 1; meiotic ch1.969E−022.9047.5420683AA830168Hs. 271305ESTs1.481E−032.9042.75414429R51494Hs. 71818ESTs1.903E−022.9037.25426590AA617830Hs. 28310ESTs3.777E−032.9034.75408138AA535740Hs. 170263tumor protein p53-binding protein, 17.123E−032.9032.75437151AA745618BANP homolog, SMAR1 homolog6.130E−022.8935.5418729AB028449Hs. 87889helicase-moi1.032E−042.8965.25447002BE242866Hs. 16933HepA-related protein9.175E−072.8851.25451582AI963026Hs. 289958ESTs, Weakly similar to putative p150 [H9.642E−032.8849.25456804AI421645Hs. 139851caveolin 23.448E−022.8850.5428695AI355647Hs. 189999purinergic receptor (family A group 5)6.035E−052.8842.5418248NM_005000Hs. 83916NM_005000*: Homo sapiens NADH dehydrogena3.032E−022.8648427547BE047653Hs. 119183ESTs, Weakly similar to ZN91_HUMAN ZINC1.034E−032.8647409509AL036923Hs. 322710ESTs9.289E−032.8652.5421718AL117574Homo sapiens mRNA; cDNA DKFZp434L2221 (f3.120E−052.8560.75419438AA406400Hs. 12482glyceronephosphate O-acyltransferase7.982E−032.8538412019AA485890Hs. 69330Homo sapiens cDNA FLJ13835 fis, clone TH3.895E−052.8565.75427704AW971063Hs. 292882ESTs4.162E−022.8578.25422607Z45471Hs. 118684stromal cell-derived factor 21.086E−042.8565.25403330Target Exon3.674E−042.8574.5430280AA361258Hs. 237868interleukin 7 receptor2.353E−042.8580.75436100AA704806Hs. 143842ESTs, Weakly similar to 2004399A chromos3.034E−022.8554.5453041AI680737Hs. 289068Homo sapiens cDNA FLJ11918 fis, clone HE5.421E−032.8453408527AL135018Hs. 33074Homo sapiens, clone IMAGE: 3606519, mRNA,8.617E−032.8342.5429503AA394183Hs. 26873ESTs1.693E−032.8242.25445564AB028957Hs. 12896KIAA1034 protein5.859E−032.8241.5401197ENSP00000229263*: HSPC213.3.234E−022.8240.5409205AI952884Hs. 14832ESTs, Moderately similar to unnamed prot3.937E−032.8238.5443280AA299688Hs. 24183ESTs2.494E−032.8241.5408411C15118Hs. 322482hypothetical protein DKFZp566J20461.546E−062.82115417831H16423Hs. 82685CD47 antigen (Rh-related antigen, integr3.330E−042.8158.5433483AI926520Hs. 31016putative DNA binding protein1.902E−022.8133433902AW292820Hs. 144906ESTs6.835E−042.8149.25409132AJ224538Hs. 50732protein kinase, AMP-activated, beta 2 no3.408E−072.81137.25431976AA719001Hs. 291065ESTs8.638E−042.8043.25425836AW955696Hs. 90960ESTs9.808E−062.8057.5439773AI051313Hs. 143315ESTs3.918E−032.8037427399NM_014883Hs. 177664KIAA0914 gene product1.085E−032.8084.5420985X94703RAB28, member RAS oncogene family1.925E−032.7939410800BE280421Hs. 94499ESTs2.227E−042.7956418549AA927177Hs. 86041CGG triplet repeat binding protein 14.244E−042.7953.75420339AW968259Hs. 186647ESTs1.399E−052.7973443352H70284Hs. 160152ESTs, Weakly similar to FPHU alpha-fetop1.186E−032.7940.75417018M16038Hs. 80887v-yes-1 Yamaguchi sarcoma viral related1.542E−022.7959.5423067AA321355Hs. 285401colony stimulating factor 2 receptor, be2.710E−032.7934458971AL119206Hs. 126257ESTs, Weakly similar to ALU1_HUMAN ALU S4.816E−032.7977.25438493AI130740Hs. 6241phosphoinositide-3-kinase, regulatory su4.492E−062.79149.5424755AB033094Hs. 152925KIAA1268 protein3.619E−072.7883436562H71937Hs. 322904ESTs, Weakly similar to I38022 hypotheti4.099E−032.7895421662NM_014141Hs. 106552cell recognition molecule Caspr21.133E−032.7838.25408190AB032963Hs. 43577ATPase, Class I, type 8B, member 27.488E−022.7737.25434500AF143877Hs. 215047Homo sapiens clone IMAGE: 113431 mRNA seq1.159E−022.7734.5445044AL137728Hs. 12258Homo sapiens mRNA; cDNA DKFZp434B0920 (f5.012E−032.7743.25429312AL133572Hs. 199009protein containing CXXC domain 22.948E−032.7634.75445106T10219Hs. 12329KIAA0697 protein3.330E−042.7661450919AA011616Hs. 269877ESTs4.466E−042.7550435767H73505Hs. 117874ESTs7.701E−022.7561.75435872AA701357Hs. 192759ESTs8.827E−052.75128.25434521NM_002267Hs. 3886karyopherin alpha 3 (importin alpha 4)6.838E−042.7574432134AI816782Hs. 122583hypothetical protein FLJ219346.838E−042.7559.75452057AW952005Hs. 14928hypothetical protein FLJ129032.353E−042.7545.25424381AA285249Hs. 146329protein kinase Chk21.969E−022.7544.75434963AW974957Hs. 288719Homo sapiens cDNA FLJ12142 fis, clone MA4.260E−032.7543.75411352NM_002890Hs. 758RAS p21 protein activator (GTPase activa1.037E−032.7543426416AW612744Hs. 169824killer cell lectin-like receptor subfami6.555E−032.7541449259AW452058Hs. 257519ESTs5.652E−042.7540.25436184BE154067Hs. 136660ESTs, Weakly similar to ZN91_HUMAN ZINC9.624E−032.7540.25439605AF086431Hs. 22380ESTs5.206E−032.7534.75404676Target Exon2.577E−022.7530.75443154H04360Hs. 24283ESTs, Moderately similar to reduced expr2.599E−032.7548.5440538W76332Hs. 79107mitogen-activated protein kinase 144.096E−032.7431.75413823AI341417Hs. 29406ESTs3.893E−072.7478.25413880AI660842Hs. 110915interleukin 22 receptor5.412E−052.7363.25409005AW299806Hs. 297256ESTs6.345E−032.7337.25423706U95218Hs. 131924G protein-coupled receptor 657.848E−042.7340.25433745AF075320Hs. 28980hypothetical protein FLJ145404.629E−032.7338.5459436AA323121gb: EST25881 Cerebellum II Homo sapiens c1.298E−032.7341.5415668AW957684Hs. 306814hypothetical protein FLJ218892.664E−022.7365.25439462AL133026Hs. 6567Homo sapiens mRNA; cDNA DKFZp436C136 (fr2.006E−032.7234436741AA860163Hs. 291319ESTs8.293E−032.7233.5422722H74219Hs. 269772ESTs9.896E−042.7240447030AW444659Hs. 232184ESTs5.005E−032.7130.75446217AI651594Hs. 99709ESTs1.714E−072.70116.25413838AV661185Hs. 75574mitochondrial ribosomal protein L195.669E−042.7044.25445715AB012958Hs. 13137UV radiation resistance associated gene1.087E−042.7054.75411213AA676939Hs. 69285neuropilin 13.341E−032.7053.75412935BE267045Hs. 75064tubulin-specific chaperone c1.090E−042.7047.75408051AI623351Hs. 172148ESTs3.449E−022.7041.75457650AA649162Hs. 236456ESTs1.107E−052.6980.25422461NM_003417Hs. 117077zinc finger protein 2647.112E−042.6933.75421524AA312082Hs. 105445GDNF family receptor alpha 11.572E−052.6872453779N35187Hs. 4338828 kD interferon responsive protein9.788E−082.68183425284AF155568Hs. 348043NS1-associated protein 12.470E−042.6844.5451107AA235108Homo sapiens ubiquitin protein ligase (U1.976E−052.6845.75443849BE566066Hs. 9893ASB-3 protein6.219E−042.6848.25438182AW342140Hs. 182545ESTs, Weakly similar to ALU1_HUMAN ALU S7.507E−042.6747433312AI241331Hs. 131765ESTs, Moderately similar to I38937 DNA/R1.822E−042.6744.5437838AI307229Hs. 184304ESTs2.389E−032.6743.75426797AW936258Hs. 342849ADP-ribosylation factor-like 53.447E−022.6739.25430594AK000790Hs. 246885hypothetical protein FLJ207831.713E−022.6731429245AW969785Hs. 285885Homo sapiens cDNA FLJ11321 fis, clone PL2.180E−022.6730.75407796AA195509Hs. 39733postsynaptic protein CRIPT9.005E−042.6739.75421939BE169531Hs. 109727TAK1-binding protein 2; KIAA0733 protein9.459E−042.6783.25429623NM_005308Hs. 211569G protein-coupled receptor kinase 54.267E−032.6762.75432485N90866Hs. 276770CDW52 antigen (CAMPATH-1 antigen)2.966E−072.67203451690AW451469Hs. 209990ESTs2.664E−022.6736.75411777BE067552gb: MR4-BT0358-020200-002-g10 BT0358 Homo1.338E−022.6743.75420623BE245485Hs. 99437Homo sapiens mRNA; cDNA DKFZp586G1924 (f2.015E−032.6648.25450607AL050373Hs. 25213hypothetical protein3.968E−062.66128.5428466AF151063Hs. 184456hypothetical protein1.928E−032.6642424321W74048Hs. 1765lymphocyte-specific protein tyrosine kin3.892E−052.6671.5411943BE502436Hs. 7962ESTs, Weakly similar to S44608 C02F5.6 p8.939E−032.6634.5409161W07662Hs. 50861sirtuin (silent mating type information1.395E−052.6645.25407908BE379758Hs. 110853uncharacterized hematopoietic stem/proge4.698E−022.6637.75444057AA316896Hs. 257267FYVE and coiled-coil domain containing 11.487E−042.6656419216AU076718Hs. 164021small inducible cytokine subfamily B (Cy2.333E−022.6636.5427297AW292593Hs. 334907Homo sapiens, clone MGC: 17333, mRNA, com7.913E−052.6690.25446783AW138343Hs. 141867ESTs3.076E−032.6636427528AU077143Hs. 179565minichromosome maintenance deficient (S.7.282E−062.6564.75446830BE179030Hs. 239307Human DNA sequence from clone RP5-1174N92.019E−042.6547.5440529AW207640Hs. 16478Homo sapiens cDNA: FLJ21718 fis, clone C5.403E−042.6540.5434821AA159111Hs. 284281Human putative ribosomal protein S1 mRNA2.483E−052.6550.25437830AB020658Hs. 5867KIAA0851 protein; suppressor of actin 11.617E−032.6558418832X04011Hs. 88974cytochrome b-245, beta polypeptide (chro6.389E−052.6456.25445652AL117473Hs. 13036DKFZP727A071 protein7.158E−042.6439447387AI268331Hs. 102237tubby super-family protein7.552E−072.6467.25453315BE544203Hs. 24831ESTs3.624E−032.6441.75425266J00077Hs. 155421alpha-fetoprotein3.338E−032.6443.75414602AW630088Hs. 76550Homo sapiens mRNA; cDNA DKFZp564B1264 (f1.652E−042.6386.5436235AI084982Hs. 120790ESTs2.470E−042.6336.25430027AB023197Hs. 227743KIAA0980 protein9.843E−072.6378.5440528BE313555Hs. 7252KIAA1224 protein2.713E−032.6350403976Target Exon4.265E−032.6349.75447657AI953011Hs. 345287ESTs5.146E−042.6334.75412230AI810374Hs. 124177ESTs, Weakly similar to 2109260A B cell1.925E−032.6231.25407804AF228603Hs. 39957pleckstrin 2 (mouse) homolog5.947E−042.6261.25410853H04588Hs. 30469ESTs6.105E−032.6276.5416611AA568308ESTs, Weakly similar to ALU6_HUMAN ALU S5.669E−042.6249.75452207NM_014517Hs. 28423upstream binding protein 1 (LBP-1a)1.037E−052.6276.75435445AA737345Hs. 294041ESTs2.706E−032.6135.5434608AA805443Hs. 179909hypothetical protein FLJ229951.133E−032.6150420058AK001423Hs. 94694Homo sapiens cDNA FLJ10561 fis, clone NT6.456E−062.6179.75447769AW873704Hs. 320831Homo sapiens cDNA FLJ14597 fis, clone NT4.253E−042.6147.5438441AW664960Hs. 205319ESTs2.024E−042.6166448770AA326683Hs. 21992likely ortholog of mouse variant polyade2.860E−042.6169.5431899AA521381Hs. 187726ESTs4.627E−032.6137.75449082BE387561Hs. 22981DKFZP586M1523 protein2.340E−042.6052.5449881Z28444Hs. 24119Homo sapiens mRNA; cDNA DKFZp586G2222 (f9.477E−042.6066.5433913AI694106Hs. 72325ESTs, Weakly similar to I38022 hypotheti6.131E−022.6043.25442432BE093589Hs. 38178hypothetical protein FLJ234681.031E−042.6076.25425118AU076611Hs. 154672methylene tetrahydrofolate dehydrogenase3.205E−032.6059.25422283AW411307Hs. 114311CDC45 (cell division cycle 45, S.cerevis1.561E−042.6045.25412520AA442324Hs. 795H2A histone family, member O1.669E−052.6095.5411580AL080088Hs. 70877DKFZP564K2062 protein7.455E−052.6042.75431562AI884334Hs. 11637ESTs9.075E−022.5948.5419426AI214690Hs. 346257aldo-keto reductase family 1, member B12.462E−042.5948422241Y00062Hs. 170121protein tyrosine phosphatase, receptor t3.968E−062.58129401928Target Exon4.841E−022.5732427130AB029020Hs. 173694KIAA1097 protein9.832E−062.5766.5409614BE297412Hs. 55189hypothetical protein9.799E−082.57161.5448873NM_003677Hs. 22393density-regulated protein3.845E−042.5640.25413305NM_000426Hs. 323511Homo sapiens cDNA: FLJ23176 fis, clone L1.835E−022.5643.75446771AA128965Hs. 60679TATA box binding protein (TBP)-associate1.873E−052.5678.5422392NM_005908Hs. 115945mannosidase, beta A, lysosomal1.898E−022.5630423968AF098277Hs. 136529solute carrier family 23 (nucleobase tra1.648E−062.5574.25418941AA452970Hs. 239527E1B-55 kDa-associated protein 53.034E−022.5556.75434669AF151534Hs. 92023core histone macroH2A2.22.738E−062.55119.25432476T94344Hs. 326263ESTs1.691E−032.5593.5452748AB011128Hs. 30512Homo sapiens mRNA for KIAA0556 protein,7.507E−042.5546.5445757AW449065Hs. 13264KIAA0856 protein8.934E−032.5544.25434948AI498469Hs. 12622ESTs, Highly similar to AF161436 1 HSPC32.011E−032.5540439372AF088033Hs. 159225ESTs1.200E−022.5535.5448888AW196663Hs. 200242caspase recruitment domain protein 61.915E−042.5540.25417821BE245149Hs. 82643protein tyrosine kinase 97.985E−032.5466415000AW025529Hs. 239812Homo sapiens serologically defined breas4.108E−052.5474.75417558AF045229Hs. 82280regulator of G-protein signalling 101.338E−022.5437.75418796AA228351Hs. 34060ESTs1.815E−042.5438.5450196AW956868Hs. 24608DKFZP564D177 protein1.175E−052.54138.5422043AL133649Hs. 110953retinoic acid induced 13.856E−042.5451.5428985AL134193Hs. 194709paraneoplastic antigen MA11.298E−032.5342.5411196W31212Hs. 69192vacuolar protein sorting 29 (yeast homol1.439E−022.5341.25427094AB025254Hs. 283761tudor repeat associator with PCTAIRE 22.092E−072.5390.5452737AK001680Hs. 30488DKFZP434F091 protein2.090E−032.5230.5407355AA846203Hs. 193974ESTs, Weakly similar to ALU1_HUMAN ALU S9.360E−042.5230.5431374BE258532Hs. 251871CTP synthase6.831E−042.5272.75427647W19744Hs. 180059Homo sapiens cDNA FLJ20653 fis, clone KA3.898E−052.5273.5407436AF211977gb: Homo sapiens LENG10 mRNA, partial seq1.437E−022.5230437145AF007216Hs. 5462solute carrier family 4, sodium bicarbon1.134E−032.5273.25421446AA682425Hs. 118959ESTs1.774E−022.5232.25458079AI796870Hs. 54277DNA segment on chromosome X (unique) 9923.091E−062.52130.5424375AF070547Hs. 146312Homo sapiens clone 24820 mRNA sequence4.423E−022.5131428727AF078847Hs. 191356general transcription factor IIH, polype9.891E−042.5163.25421405AA251944Hs. 104058CGI-29 protein1.567E−042.5174.5418733AA227714Hs. 179703KIAA0129 gene product1.650E−042.5056447225R62676Hs. 17820Rho-associated, coiled-coil containing p4.611E−052.5095.75433162AI025842Hs. 152530ESTs5.424E−052.50102.75423645AI215632Hs. 147487ESTs1.736E−042.5056.75446045AV656268Hs. 209153angiopoietin-like 32.239E−042.5056.25430273AI311127Hs. 125522ESTs9.035E−042.5046401898NM_024722*: Homo sapiens hypothetical pro1.927E−032.5045427210BE396283Hs. 173987eukaryotic translation initiation factor6.852E−032.5044.25445664AW968638Hs. 237691ESTs, Weakly similar to KIAA0601 protein7.093E−052.5039.25422195AB007903Hs. 113082KIAA0443 gene product6.581E−032.5033423069W15613Hs. 1613adenosine A2a receptor5.618E−022.5030.25417928AA209344Hs. 30177ESTs2.878E−042.4968.5448717R67419Hs. 21851Homo sapiens cDNA FLJ12900 fis, clone NT4.097E−032.4950.25433000U26710Hs. 3144Cas-Br-M (murine) ectropic retroviral tr2.036E−022.4844.75426011AW996096Hs. 58924ESTs, Weakly similar to JC5594 jerky gen5.152E−042.4845.75407112AA070801Hs. 51615ESTs, Weakly similar to ALU7_HUMAN ALU S3.450E−022.47106.75410196AI936442Hs. 59838hypothetical protein FLJ108084.868E−052.4765.5430487D87742Hs. 241552KIAA0268 protein2.235E−042.4743.5427254AL121523Hs. 97774ESTs4.813E−032.4736.5452480AI903526gb: RC-BT031-090199-063 BT031 Homo sapien4.994E−022.4731.75403027C21000364*: gi|8394509|ref|NP_058778.1| u2.380E−032.4734.25414760BE298063Hs. 77254chromobox homolog 1 (Drosophila HP1 beta5.090E−072.4779.5444931AV652066Hs. 75113general transcription factor IIIA7.180E−042.4770.5437708AB033020Hs. 5801KIAA1194 protein8.210E−062.4764.25440340AW895503Hs. 125276ESTs8.596E−032.4733.75448198BE622100Hs. 209406ESTs, Weakly similar to I38600 zinc fing2.871E−042.4643.75405689NM_018850*: Homo sapiens ATP-binding cass5.010E−032.46133418203X54942Hs. 83758CDC28 protein kinase 21.692E−032.4550.25449239T24653Hs. 23360likely ortholog of yeast ARV11.272E−062.4546.5434128W93170Hs. 284164protein x 00042.354E−042.4541416354NM_000633Hs. 79241B-cell CLL/lymphoma 25.720E−052.4540438141AW946871gb: RC2-ET0022-080500-012-d02 ET0022 Homo1.547E−032.4533.5423983AA333261gb: EST37476 Embryo, 8 week I Homo sapien2.578E−022.4531.25438922R71288Hs. 259664ESTs5.297E−022.4531.5426295AW367283Hs. 278270zinc finger protein 6 (CMPX1)3.307E−052.45169.5420936AA456112Hs. 99410ESTs6.341E−032.4536.5438475W03856Hs. 13188ESTs, Highly similar to Gene product wit1.714E−072.44157.5446487AA195526Hs. 44625Rad50-interacting protein 12.288E−032.4432.5450253AL133047Hs. 24715Homo sapiens mRNA; cDNA DKFZp434D0215 (f4.265E−032.4462421999U50535Hs. 110630Human BRCA2 region, mRNA sequence CG0063.673E−022.4473.5442643U82756Hs. 3991PRP4/STK/WD splicing factor4.032E−022.4432.75427156BE621719Hs. 173802KIAA0603 gene product2.841E−022.4354.5433201AB040896Hs. 21104KIAA1463 protein2.098E−032.4345.75442149AB014550Hs. 8118KIAA0650 protein2.829E−032.4252.25436021R26877Hs. 24128ESTs5.639E−032.4238.5451099R52795Hs. 25954interleukin 13 receptor, alpha 24.993E−022.4252430526AF181862Hs. 242407G protein-coupled receptor, family C, gr4.126E−052.42101.25414404W16712Hs. 306117KIAA0306 protein9.266E−052.4294410664NM_006033Hs. 65370lipase, endothelial2.192E−032.4257436643AA757626Hs. 10941ESTs, Weakly similar to IPP1_HUMAN PROTE2.235E−042.4165.75418780AA228078Hs. 255096ESTs2.829E−032.4141427468AB036829Hs. 178347SKIP for skeletal muscle and kidney enri2.122E−042.4141437143AW204056Hs. 8917ESTs1.969E−072.41124.75439747AK001148Hs. 6671COP9 complex subunit 42.349E−042.4153447881BE620886Hs. 75354GCN1 (general control of amino-acid synt4.442E−032.4154443562AF118838Hs. 9599solute carrier family 25, member 13 (cit5.142E−022.4153.25448280AW014215Hs. 357zinc finger protein 134 (clone pHZ-15)9.001E−042.4137439645BE091801Hs. 27167ESTs, Weakly similar to I38022 hypotheti5.430E−072.4171.5427657AV652249Hs. 180107polymerase (DNA directed), beta2.417E−072.41116.5412977AA125910Hs. 191461ESTs6.492E−042.4155.25450203AF097994Hs. 301528L-kynurenine/alpha-aminoadipate aminotra5.298E−022.4047.75417089H52280Hs. 18612Homo sapiens cDNA: FLJ21909 fis, clone H1.131E−072.40155.5446044H67567Hs. 13572calcium modulating ligand6.632E−072.4091444088AW297946Hs. 138208ESTs3.911E−022.4040.5449118R67477Hs. 23103Bet1 (S. cerevisiae) homolog7.679E−032.4039.25441488AW450935Hs. 7862hypothetical protein FLJ203121.044E−052.40102.25424088AL049942Hs. 139240DKFZP564F1422 protein3.007E−042.3942.5444755AA431791Hs. 113823CIpX (caseinolytic protease X, E. coli)2.406E−022.3933439768AI337300Hs. 173138hypothetical protein MGC46041.541E−062.3998.5427985AI770170Hs. 29643Homo sapiens cDNA FLJ13103 fis, clone NT4.814E−032.3942.25448646AU077149Hs. 21704transcription factor 12 (HTF4, helix-loo3.170E−042.3883.75449845AW971183Hs. 9683DnaJ (Hsp40) homolog, subfamily C, membe1.829E−042.38111451578NM_016323Hs. 26663cyclin-E binding protein 13.893E−072.38146.25446570AV659177Hs. 127160ESTs1.399E−052.3879.5430532D61216Hs. 18672ESTs1.599E−022.3835.25418822Z43371Hs. 7012ESTs5.219E−032.3840.75446507AA352554Hs. 15164nuclear DNA-binding protein3.630E−032.3858419203AA488719Hs. 190151ESTs2.387E−032.3856.25435427AA682573Hs. 188982ESTs, Weakly similar to organic anion tr2.012E−032.3873.5444372AW377983Hs. 298140Homo sapiens cDNA: FLJ22502 fis, clone H1.269E−042.3831414496W73853ESTs8.625E−042.3873430219X99209Hs. 235887HMT1 (hnRNP methyltransferase, S. cerevi2.494E−022.3842447211AL161961Hs. 17767KIAA1554 protein1.716E−072.38143.5427020AA397546Hs. 119151ESTs2.493E−032.3835.25425375AA631977Hs. 155995KIAA0643 protein1.240E−052.3834.25440341AW664012Hs. 132333ESTs6.525E−042.3830.25418300AI433074Hs. 86682Homo sapiens cDNA: FLJ21578 fis, clone C3.787E−022.3830.25429978AA249027ribosomal protein S62.953E−032.3785.25422614AI908006Hs. 295362Homo sapiens cDNA FLJ14459 fis, clone HE5.423E−032.3735.25447279AA325308Hs. 18016Homo sapiens mRNA; cDNA DKFZp586H0324 (f1.694E−032.3747.5420613AI873871Hs. 122444ESTs, Weakly similar to A47582 B-cell gr4.453E−072.3789.5408521AA055264Hs. 260848ESTs, Weakly similar to S23650 retroviru1.971E−052.3744.75429617X89984Hs. 211563B-cell CLL/lymphoma 7A3.335E−032.3630414172AW954324Hs. 75790phosphatidylinositol glycan, class C8.270E−032.3631418416U11700Hs. 84999ATPase, Cu transporting, beta polypeptid1.764E−052.3659.25446071N51527Hs. 13659hypothetical protein DKFZp586F24238.224E−062.36102.75451743AW074266Hs. 23071ESTs9.290E−052.3656.25437134AA349944Hs. 42915ARP2 (actin-related protein 2, yeast) ho1.199E−022.3651.5410612AW502698Hs. 118152ESTs3.734E−062.35117.5442439U09759Hs. 246857mitogen-activated protein kinase 97.907E−052.3570439103AF085959Hs. 38705ESTs1.616E−032.3541.5427469AA403084Hs. 269347ESTs, Weakly similar to 2109260A B cell4.093E−032.3540.75428044AA093322Hs. 301404RNA binding motif protein 36.130E−022.3535.75420137AA306478Hs. 95327CD3D antigen, delta polypeptide (TiT3 co2.255E−062.3578.5446594AI311917Hs. 16292ESTs5.144E−022.3571.75452685AI634651Hs. 30250v-maf musculoaponeurotic fibrosarcoma (a7.085E−072.34145.75439708AI761369Hs. 59584hypothetical protein FLJ211441.735E−042.3436.5451589AA424791Hs. 5734meningioma expressed antigen 5 (hyaluron3.852E−042.3357414312AA155694Hs. 191060ESTs7.918E−052.3254.75439556AI623752Hs. 163603ESTs4.627E−032.3245.5421025AW958975Hs. 29397Homo sapiens cDNA FLJ13226 fis, clone OV5.395E−042.3237435919AI052189Hs. 114104ESTs5.010E−032.3230.75408931AA251995Hs. 334648poly(A) polymerase alpha2.841E−022.3237.25438000AI825880Hs. 5985non-kinase Cdc42 effector protein SPEC26.103E−032.3272.5402041C15001201*: gi|6841178|gb|AAF28942.1|AF161.687E−032.3240.5437223C15105Hs. 330716Homo sapiens cDNA FLJ14368 fis, clone HE8.248E−042.3195.25420717AA284447Hs. 271887ESTs7.277E−022.3141408340AB037762Hs. 44268myelin gene expression factor 25.994E−052.3139452248AA093668Hs. 28578muscleblind (Drosophila)-like2.634E−052.3162.25436252AI539519Hs. 120969Homo sapiens cDNA FLJ11562 fis, clone HE5.406E−042.3170420825AI656727gb: tt53f12.x1 NCI_CGAP_GC6 Homo sapiens7.165E−042.3142.5442831AI798959Hs. 131686ESTs7.169E−042.3176.75407970AW403814Hs. 41714BCL2-associated athanogene1.038E−022.3030410726AI623859Hs. 15936ESTs2.595E−042.3033.25437109AW006781Hs. 5457hypothetical protein FLJ107381.732E−042.3045.25415662AW972481Hs. 170610ESTs, Highly similar to G01887 MEK kinas6.380E−052.3076.5425913AA365799Hs. 50785SEC22, vesicle trafficking protein (S. c6.393E−052.3079.75410017AW952426Hs. 109438Homo sapiens clone 24775 mRNA sequence1.089E−042.3082.25422900M641201Hs. 222051ESTs5.657E−042.3054.75420164AW339037Hs. 24908ESTs2.491E−022.3033.75413029AL119399Hs. 293850ESTs2.764E−052.3044.5457605AV657778Hs. 3314selenoprotein P, plasma, 17.165E−042.3082.25407656AW747986Hs. 37443Homo sapiens mRNA; cDNA DKFZp434B2119 (f3.664E−042.2945452852AK001972Hs. 30822hypothetical protein FLJ111104.496E−062.29121.5456563AA989220Hs. 766ESTs1.715E−022.2975449103T24968Hs. 23038HSPC071 protein9.789E−052.2953.75425960AW410646Hs. 164649hypothetical protein DKFZp434H2472.493E−032.2952.75417386AL037228Hs. 82043Dt23 gene product2.841E−022.2837.25443189AB023179Hs. 9059KIAA0962 protein9.877E−042.2838.5439815AA206079Hs. 6693hypothetical protein FLJ204208.804E−052.2846.5404298C6001238*: gi|121715|sp|P26697|GTA3_CHICK5.420E−032.2842441664AW748420Hs. 6236Homo sapiens cDNA: FLJ21487 fis, clone C9.882E−042.2858.5448959AI610343Hs. 186355ESTs2.020E−042.2746417206AA291183Hs. 81648hypothetical protein FLJ11021 similar to1.184E−032.2740.75422460AW445014Hs. 197746ESTs2.659E−022.2733.5448410AK000227Hs. 21126hypothetical protein FLJ202206.881E−022.2732.75424528AW073971Hs. 238954ESTs, Weakly similar to KIAA1204 protein6.225E−042.2745.25456721AA533356gb: nj67f10.s1 NCI_CGAP_Pr10 Homo sapiens1.038E−022.2730.25416269AA177138Hs. 161671ESTs6.350E−032.2747.75430308BE540865Hs. 238990cyclin-dependent kinase inhibitor 1B (p21.398E−052.27105446161AA628206Hs. 14125p53 regulated PA26 nuclear protein4.251E−042.2774.75414256AW410035Hs. 75862MAD (mothers against decapentaplegic, Dr1.968E−022.2737.5457819AA057484Hs. 35406ESTs, Highly similar to unnamed protein2.574E−022.2730.5420463D51872Hs. 23492ESTs4.267E−032.2733408077AL133574Hs. 42458Homo sapiens mRNA; cDNA DKFZp586C1817 (f5.869E−032.2775401403Target Exon3.235E−022.2659.75440675AW005054Hs. 47883ESTs, Weakly similar to KCC1_HUMAN CALCI5.063E−062.26163417867AW952547Hs. 194603ESTs, Moderately similar to I38022 hypot7.964E−032.2639.25448356AL120837Hs. 20993high-glucose-regulated protein 83.340E−022.2532421931NM_000814Hs. 1440gamma-aminobutyric acid (GABA) A recepto2.471E−042.2574.25435524AK000001Hs. 4914Homo sapiens mRNA for FLJ00031 protein,4.354E−052.2549.5439475AA836331Hs. 134981ESTs4.626E−032.2541414436U50078Hs. 76127hect (homologous to the E6-AP (UBE3A) ca9.997E−032.2562.25436856AI469355Hs. 127310ESTs8.090E−072.25210.5407151H25836Hs. 301527ESTs, Moderately similar to unknown [H.s2.111E−072.25231.25435756AI418466Hs. 33665ESTs3.491E−042.2556.25416754H07145Hs. 6799ESTs, Weakly similar to T12483 hypotheti1.690E−032.2546.75444647H14718Hs. 11506Human clone 23589 mRNA sequence2.255E−022.2545440638AI376551gb: te64e10.x1 Soares_NFL_T_GBC_S1 Homo s3.480E−032.2536.25429025AI399910Hs. 266782KIAA1826 protein3.338E−032.2535.25418383AA218986Hs. 118854ESTs3.769E−032.2532.25438829AA826926Hs. 204214ESTs, Weakly similar to I38022 hypotheti2.600E−032.2542.75416240NM_001981Hs. 79095epidermal growth factor receptor pathway2.219E−052.2569.75438030X98427Hs. 122634ESTs1.243E−032.24213.75419200AW966405Hs. 288856prefoldin 53.897E−072.24136.25433713AW976511Hs. 112592ESTs8.288E−032.2491447109X69086Hs. 286161Homo sapiens cDNA FLJ13613 fis. clone PL3.777E−032.2452452870AW502761Hs. 30909KIAA0430 gene product1.246E−022.2431.25427268X78520Hs. 174139chloride channel 31.922E−042.2487.25439046AA947354gb: od86e11.s1 NCI_CGAP_Ov2 Homo sapiens1.488E−042.2439.25453929AW190054gb: xl11d05.x1 NCI_CGAP_Ut4 Homo sapiens1.657E−022.2330.25417944AU077196Hs. 82985collagen, type V, alpha 23.331E−042.23129.75417303NM_001698Hs. 81886AU RNA-binding protein/enoyl-Coenzyme A3.330E−042.2367411495AP000693Hs. 70359KIAA0136 protein2.411E−022.2336.25452144AA032197Hs. 102558Homo sapiens, clone MGC: 5352, mRNA, comp2.789E−052.2258.25405270NM_018850*: Homo sapiens ATP-binding cass1.389E−022.2258452436BE077546Hs. 31447ESTs, Moderately similar to A46010 X-lin2.491E−032.2240.25450314AA574309Hs. 283402TCR eta2.286E−032.2238442806AW294522Hs. 149991ESTs3.790E−022.2234.75406274Target Exon1.084E−032.2269.5449437AI702038Hs. 100057Homo sapiens cDNA: FLJ22902 fis, clone K1.922E−042.2273.75434260AF121856Hs. 284291sorting nexin 61.321E−052.22100.5445893AI610702Hs. 28212ESTs, Weakly similar to TRHY_HUMAN TRICH2.942E−052.2263.75429520AA160142Hs. 205058hypothetical protein FLJ200751.839E−022.2239437801AA613866Hs. 5848Homo sapiens mRNA; cDNA DKFZp564L222 (fr4.426E−022.2239425508AA991551Hs. 97013Homo sapiens, Similar to RIKEN cDNA 23103.290E−052.2159.25425303AA354785gb: EST63098 Jurkat T-cells V Homo sapien5.450E−022.2130.75450157AW961576Hs. 60178ESTs3.074E−032.2069453927AA082465Hs. 125031choline/ethanolaminephosphotransferase9.265E−062.2058437580AA761075Hs. 293567ESTs4.094E−032.2054.75408990AL022395Hs. 49526f-box and leucine-rich repeat protein 42.289E−032.2044438619AB032773Hs. 6341TU12B1-TY protein1.076E−022.2039404149C6002509*: gi|5031885|ref|NP_005568.1|li5.296E−022.2036.25448102AI750793Hs. 20295CHK1 (checkpoint, S. pombe) homolog1.901E−022.2030433618AA602539Hs. 345494ESTs4.698E−022.2030.25446591H44186Hs. 15456PDZ domain containing 15.821E−072.20113.5416041AA345547Hs. 53263hypothetical protein FLJ132875.649E−032.2057.75414588AA302905gb: EST10607 Adipose tissue, white I Homo4.681E−042.2038.25459680H96982Hs. 42321ESTs3.860E−042.2084.25452574AF127481Hs. 301946lymphoid blast crisis oncogene1.483E−032.1949412240H72176Hs. 4273hypothetical protein FLJ131592.713E−032.1933.25423996AF205071Hs. 137425solute carrier family 21 (organic anion8.139E−022.1950.75440113AI916532Hs. 188272ESTs1.078E−032.1949.5456073AA587775Hs. 66295multi-PDZ-domain-containing protein1.316E−052.1956419675AL079310Hs. 92260high-mobility group protein 2-like 11.182E−032.1850.25427631AB029023Hs. 179946KIAA1100 protein5.139E−052.1873442332AI693251Hs. 8248Target CAT1.650E−042.1891.5450969BE244603Hs. 25726transposon-derived Buster 1 transposase-l2.101E−032.1845421077AK000061Hs. 101590hypothetical protein6.854E−032.1746.5444291AI598022Hs. 193989TAR DNA binding protein2.232E−042.1740407904W44735Hs. 9286Homo sapiens cDNA: FLJ21278 fis, clone C1.647E−042.1735.5442129N36918Hs. 20142PNAS-127 protein2.948E−032.1734412025AI827451Hs. 24143Wiskott-Aldrich syndrome protein interac3.489E−052.1782.75412059AA317962Hs. 249721ESTs, Moderately similar to PC4259 ferri3.674E−022.1742432235AA531129Hs. 190297ESTs5.460E−022.1736.75424247X14008Hs. 234734lysozyme (renal amyloidosis)8.638E−042.17158.25413326H88621Hs. 19762ESTs, Weakly similar to KIAA1140 protein7.992E−032.1745.75416065BE267931Hs. 78996proliferating cell nuclear antigen2.240E−042.17123.25413012D83777Hs. 75137KIAA0193 gene product2.948E−032.1653.75442092AW578669hypothetical protein FLJ124391.619E−032.1631.25423630AB011132Hs. 129952KIAA0560 gene product3.203E−032.1640.75421921H83363Hs. 6820translocase of inner mitochondrial membr4.039E−042.1552.25429586T73510Hs. 209153angiopoietin-like 34.604E−052.15132449217AA278536Hs. 23262ribonuclease, RNase A family, k67.916E−022.1545.5409518BE384836Hs. 3454KIAA1821 protein8.314E−052.1534.25414525C14904Hs. 45184Homo sapiens cDNA FLJ12284 fis, clone MA4.233E−042.1544411979X85134Hs. 72984retinoblastoma-binding protein 59.468E−042.1542.75448705H05072Hs. 124984ESTs, Moderately similar to ALU7_HUMAN A2.180E−022.1537.25419165AW860767Hs. 118879ESTs1.038E−022.1536419479AI288348Hs. 23450mitochondrial ribosomal protein S258.590E−022.1535.5432709H17238gb: ym42f03.r1 Soares infant brain 1NIB H1.353E−032.1533.5440266AA088809Hs. 19525hypothetical protein FLJ227949.808E−052.1582.5440010AA534930Hs. 127236hypothetical protein FLJ128791.619E−032.1546.25408866AW292096Hs. 255036ESTs4.439E−032.1443.5438023AF204883Hs. 6048FEM-1 (C. elegans) homolog b3.849E−042.1450439318AW837046Hs. 6527G protein-coupled receptor 563.331E−042.1468.75403576C3000124: gi|12737057|ref|XP_012129.1|si5.416E−032.1435429567R35606Hs. 326800Human EST clone 53125 mariner transposon3.623E−032.1332452679Z42387Hs. 83883transmembrane, prostate androgen induced3.069E−032.1332424904AI221739Hs. 96899ESTs1.035E−022.1338.75441991AW844404Hs. 126901Homo sapiens mRNA full length insert cDN3.860E−042.1345.25433160AW207002Hs. 134342TASP for testis-specific adriamycin sens1.543E−022.1358.25409969AW514668Hs. 194258ESTs, Moderately similar to ALU5_HUMAN A2.333E−022.1334.75437796AW407459Hs. 5836mitochondrial ribosomal protein S232.218E−052.1357404240NM_018950: Homo sapiens major histocompat6.450E−062.13177.25413587AA156164Hs. 286241protein kinase, cAMP-dependent, regulato1.842E−032.1353.5453022AA031499Hs. 118489ESTs1.483E−032.1376407183AA358015gb: EST66864 Fetal lung III Homo sapiens5.708E−052.1349.25408047AW205461Hs. 243612ESTs6.105E−032.1340.5445800AA126419Hs. 32944inositol polyphosphate-4-phosphatase, ty9.289E−032.1340401952Target Exon3.784E−022.1331.5407874AI766311Hs. 289047Homo sapiens cDNA FLJ14059 fis, clone HE1.361E−062.12156.25430399AI916284Hs. 199671ESTs4.676E−042.1262.25444913AI362726Hs. 193656Homo sapiens mRNA for KIAA1658 protein,2.218E−052.1242.5412760AW379030Hs. 41324ESTs4.117E−052.1155.75443804AL135352Hs. 255883ESTs, Weakly similar to I38022 hypotheti9.035E−042.1144454146BE086548Hs. 42346calcineurin-binding protein calsarcin-11.848E−032.11115425745U44060Hs. 14427Homo sapiens cDNA: FLJ21800 fis, clone H6.541E−042.1181426676R19549Hs. 13996Homo sapiens cDNA: FLJ23260 fis, clone C1.640E−062.11147.75430587AK000341Hs. 246107elongation of very long chain fatty acid1.344E−042.1191.5448442AB033281Hs. 21229f-box and WD-40 domain protein 1B6.107E−032.1152429286AA449239Hs. 154855ESTs4.644E−042.1135439656AW138241Hs. 210846ESTs8.798E−052.1145.25438135AI253025Hs. 190426ESTs1.085E−032.1199407795AA044754Hs. 48821ESTs3.678E−042.1158.5447749T53260Hs. 191091ESTs7.069E−052.1151.25426685R20212Hs. 28454ESTs3.077E−032.1040.25440495AA887212Hs. 14161hypothetical protein DKFZp434I19305.008E−032.1032.5456373BE247706Hs. 89751membrane-spanning 4-domains, subfamily A2.022E−042.1061.75445817NM_003642Hs. 13340histone acetyltransferase 19.044E−042.1052.75449901AI674072gb: wd15h01.x1 Soares_NFL_T_GBC_S1 Homo s5.149E−042.1041.5439161Y15164Hs. 6483oral-facial-digital syndrome 16.522E−042.1038.75442229AI885776Hs. 8164Mulibrey nanism7.120E−032.1037.5441024AW081530Hs. 268231ESTs2.934E−032.1031.5417691AU076610Hs. 82399low density lipoprotein receptor defect6.847E−032.1030445447H14522Hs. 8358ribosomal protein S4, X-linked2.286E−032.1050423703NM_014913Hs. 131915KIAA0863 protein1.086E−042.1054448749AW859679Hs. 21902Homo sapiens clone 25237 mRNA sequence2.491E−022.0938426272AW450671Hs. 189284ESTs2.953E−052.0994450124N95443Hs. 19180Homo sapiens mRNA; cDNA DKFZp564E122 (fr2.013E−032.0947413856D13639Hs. 75586cyclin D22.602E−032.0945.75446103U90918Hs. 13804hypothetical protein dJ462O23.21.900E−022.0931453173AB007902Hs. 32168KIAA0442 protein3.965E−062.09169.25450903AA011670Hs. 114749ESTs3.668E−042.0940.75421766AA481157Hs. 108110DKFZP547E2110 protein1.620E−032.0843.25409259AW608930Hs. 52184hypothetical protein FLJ206187.498E−072.0883.5438154AI671957Hs. 19523Homo sapiens clone 022f05 My030 protein1.646E−062.0884.5437469AW753112Hs. 15514hypothetical protein MGC32602.387E−032.0855451334AI122691Hs. 13268ESTs2.732E−042.0849.25418459R85436Hs. 268814ESTs2.866E−042.0761.25424737BE301883Hs. 152707glioblastoma amplified sequence1.146E−042.0750.75454038X06374Hs. 37040platelet-derived growth factor alpha pol2.713E−032.0741.75408951AW407227Hs. 49282hypothetical protein FLJ110883.336E−022.0732.75431923AI741770Hs. 292690ESTs, Weakly similar to I38022 hypotheti2.599E−032.0743.5447560AF065214Hs. 18858phospholipase A2, group IVC (cytosolic,4.846E−022.0740.25413836W92003Hs. 70614ESTs2.751E−022.0730450331AA009536Hs. 38323ESTs8.945E−032.0734.75446229AI744964Hs. 14449KIAA1609 protein9.450E−042.0738.75440706AA927562Hs. 148234ESTs2.101E−032.0738.75441872BE567100Hs. 154938hypothetical protein MDS0256.092E−062.07121.75415710J04543Hs. 78637annexin A71.245E−022.0731.75428220BE183533Hs. 347128Human DNA sequence from clone 34B21 on c2.733E−062.0776.5438363AI886351Hs. 22353hypothetical protein FLJ219522.129E−042.0765.25414781D50917Hs. 77293KIAA0127 gene product2.237E−042.0641421297AB037360KIAA1255 protein2.940E−052.0674.5452068W76412Hs. 57877ESTs9.454E−042.0659429788U87791Hs. 221040HBS1 (S. cerevisiae)-like6.130E−022.0538.5414718H95348Hs. 107987ESTs3.234E−022.0553421727Y13153Hs. 107318kynurenine 3-monooxygenase (kynurenine 31.389E−022.05102.25432401NM_013330Hs. 274479NME72.193E−032.05104.5448920AW408009Hs. 22580alkylglycerone phosphate synthase2.599E−032.0553.25433735AA608955Hs. 109653ESTs3.337E−032.0541.25415083AI632683Hs. 27179Homo sapiens cDNA FLJ12933 fis, clone NT2.842E−022.0538.25453078AF053551Hs. 31584metaxin 23.467E−032.0537.5453574AI767947Hs. 50841ESTs1.246E−022.0534.25426124AI268389Hs. 250697phosphatidylinositol glycan, class F4.291E−022.0531.5451408AI795947Hs. 209596ESTs1.438E−022.0530414553AI813865Hs. 164478hypothetical protein FLJ21939 similar to2.038E−022.0539.25431192AI670056Hs. 137274ESTs, Weakly similar to SP62_HUMAN SPLIC7.401E−032.0453.25457830BE147896Hs. 14662ESTs7.394E−032.0431.5449480AI741617Hs. 108447spinocerebellar ataxia 7 (olivopontocere4.046E−042.0444.25448384R12314Hs. 21056Homo sapiens cDNA: FLJ21366 fis, clone C1.085E−032.0457.75451798BE297567Hs. 27047hypothetical protein FLJ203921.480E−032.0432.25409245AA361037Hs. 288036tRNA isopentenylpyrophosphate transferas4.991E−022.0439.25446946AI878932Hs. 317topoisomerase (DNA) I2.490E−022.0432.75421166AA305407Hs. 102308potassium inwardly-rectifying channel, s1.298E−032.0469.25434275H92087Hs. 114288ESTs, Weakly similar to A47582 B-cell gr5.672E−042.04127.5428706AA432030Hs. 265827interferon, alpha-inducible protein (clo8.647E−072.04242435841R28522Hs. 186937ESTs3.666E−042.0344.5422684BE561617Hs. 119192H2A histone family, member Z2.714E−032.0353.25410333AL049538Hs. 62349ras association (RalGDS/AF-6) domain con1.157E−022.0333.25446126AW085909Hs. 10177pleckstrin homology domain interacting p3.205E−032.0362421628AL121317Hs. 106210hypothetical protein FLJ108133.780E−032.0356.75448939BE267795Hs. 22595hypothetical protein FLJ106371.246E−022.0349.25420747BE294407Hs. 99910phosphofructokinase, platelet6.596E−032.0350.25420977AW794019Hs. 100651golgi SNAP receptor complex member 24.088E−032.0330.5432886BE159028Hs. 279704chromatin accessibility complex 14.034E−022.0252432960AW150945Hs. 144758ESTs8.629E−042.0245.25429857AF089897Hs. 294030topoisomerase-related function protein 44.393E−062.0243.75407879AA045464Hs. 6557zinc finger protein 1613.776E−032.0239.75428708NM_014897Hs. 190386KIAA0924 protein1.543E−022.0236.75424670W61215Hs. 116651epithelial V-like antigen 11.091E−042.0293421315D78791Hs. 103419fasciculation and elongation protein zet6.077E−062.0290.25437370AL359567Hs. 161962Homo sapiens mRNA; cDNA DKFZp547D023 (fr3.501E−042.0248.75445330R52656Hs. 21691ESTs8.939E−032.0263.75433882U90441Hs. 3622procollagen-proline, 2-oxoglutarate 4-di7.522E−042.0257.5425409H18021Hs. 25005hypothetical protein MGC33291.620E−032.0230.75407807AL031427Hs. 40094Human DNA sequence from clone 167A19 on6.339E−032.0134414900AW452420Hs. 248678ESTs3.481E−032.0157.25408194AA601038Hs. 191797ESTs, Weakly similar to S65657 alpha-1C-2.035E−022.0138.75410582AW867197Hs. 337561hypothetical protein FLJ216165.072E−062.01103.5422576BE548555Hs. 118554CGI-83 protein6.601E−032.0179.5418504BE159718Hs. 85335Homo sapiens mRNA; cDNA DKFZp564D1462 (f3.692E−052.0180422431AI769410Hs. 221461ESTs3.471E−032.0134.5426369AF134157Hs. 169487Kreisler (mouse) maf-related leucine zip1.765E−052.01123.75413949AA316077Hs. 75639Human TB1 gene mRNA, 3′ end2.410E−022.0142.5451625R56793Hs. 106576alanine-glyoxylate aminotransferase 2-li2.789E−052.00184.5405688NM_018850*: Homo sapiens ATP-binding cass1.551E−032.0083.25418838AW385224Hs. 35198ectonucleotide pyrophosphatase/phosphodi7.726E−062.0064.5437672AW748265Hs. 5741flavohemoprotein b5?6.821E−042.0045.75458389H70284Hs. 160152ESTs, Weakly similar to FPHU alpha-fetop8.798E−052.0045.25417727AL133623Hs. 82501similar to mouse Xrn1/Dhm2 protein6.585E−032.0041444743AA045648Hs. 301957nudix (nucleoside diphosphate linked moi1.715E−022.0040.75429167BE465867Hs. 197751KIAA0666 protein7.118E−032.0040.25451141AW772713Hs. 247186ESTs2.599E−032.0040430178AW449612Hs. 152475ESTs1.337E−022.0034.75421620AA446183Hs. 91885ESTs, Weakly similar to I55214 salivary4.811E−032.0033.25439898AW505514Hs. 209561KIAA1715 protein2.596E−032.0032.5452874AK001061Hs. 30925hypothetical protein FLJ101993.337E−022.0030Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of Hep C+ Liver over Trimean of Hep C− liver Ratio R3: Difference of Trimean of Hep C+ Liver vs. Trimean of Hep C− Liver


[0343]

8







TABLE 3B








Pkey
CAT Number
Accession

















407992
103172_2
AW418811 AI743200 AI458141


408731
10774_1
R85652 AA114024 AA296219 AA375304 AW963796 AW885952 AW020969 AA114025 AI804930 BE350971 AI765355




AW317067 AW974763




H85930 AW172600 AI310231 AW612019 D62908 D62864 AA652738 AI674617 AI494064 AW138666 AI147620




AI147629 AW611793 AI668922




AI971005 AI864742 AA174171


410099
117647_1
AA081630 T08671 AI174254 D83874 AW959843 AA364503 AA693467 AW993370 BE327037 AA167714




N79906 AW901977 AW901980 W52882




T07735 AA484549 W60090 D52685 T23811 BE327043 AW901768 BE551237 AA917004 AA716027 AI439658




AA283724 AI805992 AI457096




AA084618 BE467736 AI092635 AI887863 AI697593 AA436618 AI167419 AI418634 T31586 AA436630 AA706191




AI041169 AI422304 T03534




AA211402 AI204899 AI366472 AW827081 AA788593 T32736 AI767935 AA167791 AA747914 AA663870 AI865504


411590
125064_1
T96183 T64070 AA094134


411656
1252973_1
AW855576 AW855650 AW855578 AW855577 AW855642 AW855619 AW855624 AW855621


411777
1257741_1
BE067552 BE067800 BE067593 BE067714 BE067819 H49900


413007
1343540_1
BE046662 BE046697 BE046655


413509
1374313_1
BE145419 BE145433


413645
138145_1
AA130992 AA503835 AW969537


414279
143227_1
AW021691 AI537404 R45431 AI333439 AI741845 AI674468 R44190 R52535 R52617 AI220925 AI979148 AI744688




AW242437 AA618148




AI983837 AA399623 AI676204 AI420077 N24944 D51042 AA282786 AA137264 AW236107 AW769997 N53529




AI624731 AI968243 AI863637




Z41183 N38931 H99461 AI129279 AI767302 AI474904 H72893 AI434776 AI498342 AI089287 AA398984 H79114




N33821 AA625451 AA282874




AA137263 H72493 AF236691 AA482849 R23405 R25093 R53271 BE073129 R52586 BE073137 Z33587 AW080738




Z45484 AW889665


414496
145392_1
W73853 AA928112 W77887 AW889237 AA148524 AI749182 AI754442 AI338392 AI253102 AI079403 AI370541




AI697341 H97538 AW188021




AI927669 W72716 AI051402 AI188071 AI335900 N21488 AW770478 W92522 AI691028 AI913512 AI144448 W73819




AA604358 N28900 W95221




AI868132 H98465 AA148793


414588
146467_1
AA302905 AA495793 AA149783


416475
1596398_1
T70298 H58072 R02750


416611
160379_1
AA568308 AI453629 AI984473 AI341559 AI983169 AA181902 AI708321 AI695791 AI695792 AI478300


418259
173388_1
AA215404 AI990909 BE464132 AW271459 N74332 AI262061


418304
173658_2
AA215702 AA368006 AA215703 BE066555 BE006876


418876
179960_1
AA740616 AA654854 AA229923


420825
196769_1
AI656727 AI697887 AI802122 AA910877 Z28718 T16711 AA651731 AL047264 BE000621 R68736 AW992695




AI768764 AW271284 AW974653




AI308951 AW055146 R93609 AW467031 AI096866 AI371871 AI126182 AI564756 AI361460 AI358914 AI419231




AW439733 R87059 AA628064




AW088970 AW008695 R68682 AI719136 R97752 AW196262


420985
19829_1
X94703 NM_004249 R52316 T87420 N46403 Z36855 BE076834


421057
198849_1
T58283 AA765038 AA283052 H99396 AA814751 AI032674 N81016 N81017 BE222349 AA830545


421272
200810_1
AA704157 AA286825 C15898 C15173 D81736 AI810506 BE466071 H84948 R88291 H85515 AW014470


421297
200_1
AB037360 NM_016376 AB033081 T25038 R94364 AA399607 AW814619 BE172335 AW609548 T83895 N40773




T86064 N40777 N40757




BE550945 AW450283 H62663 AI298087 AI288098 N55959 T83725 H65293 N30050 AW858563 AW858561




AW858575 AW861931 AW858569




AW363633 N30072 AW858524 AW754343 AW754342 AW604731 AW754345 AI363734 N30068 BE155949 T16974




R60281 BE071291 AI423079




BE071350 AI917153 AA256914 AA436381 AW383355 AI630341 AW383736 AW388181 BE002858




AW815513 AA351367


421718
20595_1
AL117574 AI681945 BE503055 AW015330 C16652 AA441855 AA329853




AW962502 AA441830 AF114049


423886
232905_1
AA332098 AW950499 AW950497


423983
233891_1
AA333261 AA333365 AA552870


425303
249780_1
AA354785 AA354792 AW958427


425757
255956_1
AA363171 AW963347 AA371863


427213
276052_1
AW007211 AA399252 AA960991 BE467259


427384
278072_1
T82854 AA401778 R92652


428342
290035_2
AI739168 AA426249 AI199636 AW505198 AW977291 AA824583 AA883419 AA724079 AI015524 AI377728 AW293682




AI928140 AA731438




AI092404 AI085630 AA731340


429978
31150_1
AA249027 AL038984 AK001993 AL080066 AV652725 BE566226 AA345557 AA315222 AA090585 AA375688




AA301092 AA298454 W05762




AW607939 H51658 D83880 N84323 BE296821 AW947007 D61461 AW079261 AA329482 AW901780 AI354442




AA772275 R31663 AI354441




AI767525 H92431 AI916735 H93575 AI394255 AW014741 AI573090 C06195 AW612857 AW265195 AI339558




AI377532 AI308821 AI919424




AI589705 AW055215 AI336532 AI338051 AA806547 C75509 C00618 AW071172 AW769904 AA630381 AI678018




AI863985 D79662 BE221049




AW265018 AI589700 AW196655 N76573 AI370908 BE042393 N75017 AI698870 AW960115


430068
312849_1
AA464964 M85405 AA947566


432474
348197_1
AA584042 AW973273 AA548798


432600
350959_1
AI821085 AW973464 AA554802 AI821831 AA657438 AA640756 AA650339


432676
352582_2
AI187366 AA558869 AA618478


432689
35275_1
AB018320 H56457 AA247916 N83488 N87920 AA095653 T19858 AL134279 AA094167 AI673378 AI000340




R47500 W16595 AW152297 AI625937




AA002027 AI814851 AA902666 AI039729 AW975053 BE302243 AI240793 AA193203 N55818 AI886651




AA877735 AA565288 AI284399




AA707069 AA775885 AI014967 AA524249 R56212 AA878627 H80252 AA085731 AA657859 AI753853 AA564328




H83107 H56458 AA193204




AI075230 AA001823 AI269462 F09349 N87900 AA653028 T71600 T71751 T71812 R58128 AI890218 AL134289




T71659 AA323827 N92477




T54867 AA985252 F11689 R56295 BE086764 N88917 AA013161 BE407758 AW993041 BE018672 AL120628




H54590 AW364176


432709
353139_1
H17238 AA563739 F05559 F06116


433464
367082_1
N92481 AI475594 AW674508 AA593748 AW974058


433847
374914_1
AA610266 AA610273 AA632625 AA812563 AI688018 AI094802 H79160 R99139


433891
376239_1
AA613792 AW182329 T05304 AW858385


434280
382816_1
BE005398 AA628622 AA994155


437151
433855_1
AA745618 AA745616 AW805449 BE159081


438141
450685_1
AW946871 AW946782 AW946955 AA778849


438980
467544_1
AW502384 AI982587 AA828822


439046
468133_1
AA947354 AA829660 AI687296


439195
46967_1
H89360 AF086037 H89546


440638
499025_1
AI376551 T87714 AA897445


442048
531432_1
AA974603 AI984319 AW340495


442092
532588_1
AW578669 AI862106 AW025563 AW193658 AA976004


444314
600667_1
AI140497 AW749625 AW749626 AW749644


448219
75529_4
AA228092 AW577775 AI033234 BE076308 AI377195 AW577769


449001
792914_1
AI619957 AI654836 R99473 H51659 R99472


449901
818599_1
AI674072 BE268487


451107
85931_1
AA235108 W00590 H30674 T12414 AA384068 AA482520 AA325367 AW955325 AW517234 AI749193




AW500012 AW503974 AI720354 AI769223




AW058126 AI371974 AW021415 AA017421 AI027749 R55450 W80453 AA601599 N63625 AA235217




AA015723 AI492264 AI075880 AW444749




AI056860 AI684298 AI826258 AA055649 AA558483 AAI59479 AA533567 AA496743 AA417823 AA069759




AA057021 BE247112 N68913




AA486633 AA486538 N93443 T12413


452480
919099_1
AI903526 AI903572 AI903574 AI903571


453929
98823_1
AW190054 AI263834 AA040074


456034
142696_1
AW450979 AA136653 AA136656 AW419381 AA984358 AA492073 BE168945 AA809054 AW238038




BE011212 BE011359 BE011367 BE011368




BE011362 BE011215 BE011365 BE011363


456721
222858_1
AA533356 AW468427 R67736 AA779031 AA614088 AI823404 AA318991 AA720986


457247
308656_1
AA458605 AW977252 AI261627 AW274550 AI418272 AW665579 AA731376 AW293861 D80453 AI217860






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0344]

9








TABLE 3C








Pkey
Ref
Strand
Nt_position


















400517
9796686
Minus
49996-50346


401016
8117441
Plus
126234-126359, 128050-128236


401091
9958240
Plus
94760-94898


401197
9719705
Plus
176341-176452


401403
7710966
Plus
146180-146294


401898
8570008
Minus
72013-72132, 72400-72487


401928
3873182
Plus
54932-55070


401952
3319121
Minus
53770-53979


402041
7770639
Plus
69353-69454


402439
9796503
Minus
108604-108764


402507
9797889
Plus
118979-119086


402727
9211324
Plus
54596-54777


402737
9212184
Minus
13358-13552


402847
9408716
Minus
104107-104314


402964
9581599
Minus
46624-46784


403027
7670575
Plus
60696-60932, 61362-61521


403330
8516153
Plus
116558-116698


403575
8101156
Minus
81961-82068


403576
6862645
Minus
73475-73940, 74079-74207


403707
7108128
Minus
132794-133294


403738
7212067
Plus
38434-38562, 56876-57007,





59789-59876, 60714-60933,





62986-63265


403743
7652003
Minus
136463-136646


403790
8084957
Minus
87826-87947, 89835-90002


403809
8568861
Plus
33910-34129, 34583-34862


403976
7657840
Plus
24755-24969


404149
7534008
Plus
121831-121951, 124044-124150


404240
5002624
Minus
116132-116407, 116653-116922


404298
9944263
Minus
73591-73723


404676
9797204
Minus
56167-56342, 58066-58189,





58891-59048, 60452-60628


405102
8076881
Minus
120922-121296


405141
8980911
Plus
99861-100054


405268
4156151
Minus
24404-24521


405270
4156145
Minus
3952-4123, 6886-7010, 8541-8728


405688
4508117
Minus
88702-88899


405689
4508117
Minus
92558-92698, 94282-94382,





97977-98180, 99202-99285


406038
8389537
Plus
37764-37877


406274
7543787
Plus
932-1123


406423
9256411
Plus
165600-165824






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0345] Table 4A lists about 200 genes down-regulated in Hepatitis C positive liver tissues compared to Hepatitis C negative liver tissues. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of Hepatitis C negative liver tissues to the “weighted average” of Hepatitis C positive liver tissues was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the Hepatitis C negative liver tissues was set to the trimean of various different Hepatitis C negative liver tissues. The “weighted average” of the Hepatitis C positive liver tissues was set to the either 10 or the trimean of various different Hepatitis C positive liver tissues, whichever value was greater to eliminate ratios with a denominator of zero or less. Tables 4B and 4C relate to Table 4A as 3B and 3C relate to 3A.
10TABLE 4AABOUT 200 GENES DOWN-REGULATED IN HEPATITIS C POSITIVE LIVER TISSUES COMPARED TOHEPATITIS C NEGATIVE LIVER TISSUESPkeyExAccnUnigeneIDUnigene TitleR1R2R3450912AW939251Hs. 25647v-fos FBJ murine osteosarcoma viral onco2.125E−0621.50645.75451831NM_001674Hs. 460activating transcription factor 31.410E−0419.50189.75414559AV656184Hs. 76452C-reactive protein, pentraxin-related1.209E−0419.31425.75447078AW885727Hs. 9914ESTs2.578E−0214.00138405278NM_002864: Homo sapiens pregnancy-zone pr1.132E−0311.92115.5451029AA852097Hs. 25829ras-related protein7.883E−0411.12346.75416188BE157260Hs. 79070v-myc avian myelocytomatosis viral oncog7.173E−049.65103.5442941AU076728Hs. 8867cysteine-rich, angiogenic inducer, 611.830E−048.74309.5434078AW880709Hs. 283683chromosome 8 open reading frame 41.545E−028.4776.75414220BE298094Hs. 323806gb: 601118231F1 NIH_MGC_17 Homo sapiens c3.560E−026.6357.25448607AL042506Hs. 21599Kruppel-like factor 7 (ubiquitous)2.189E−036.5057.5446066AI343931Hs. 149383ESTs3.476E−036.4254.75404501AW247252nucleoside phosphorylase2.939E−025.9353420101AW500529Hs. 95180KIAA0767 protein1.621E−035.8461.75407173T64349gb: yc10d08.s1 Stratagene lung (937210) H1.543E−025.8055420548AA278246Hs. 920ESTs5.637E−035.4645.75414327BE408145Hs. 185254ESTs, Weakly similar to T24435 hypotheti5.401E−045.4563.5416434AW163045Hs. 79334nuclear factor, interleukin 3 regulated1.900E−025.45101.75427509M62505Hs. 2161complement component 5 receptor 1 (C5a I1.439E−025.4389.75419299AI311085Hs. 62406hypothetical protein FLJ225733.630E−035.0545.25400425AY004252Hs. 287385PR domain containing 121.922E−044.8839.75417752C15737Hs. 269386ESTs4.093E−034.8043430070AF197927Hs. 231967ALL1 fused gene from 5q314.351E−054.8051.25401149Target Exon1.567E−044.7545.75409233AK002001Hs. 51305v-maf musculoaponeurotic fibrosarcoma (a2.734E−044.7480.5423053BE312679gb: 601148138F1 NIH_MGC_19 Homo sapiens c1.242E−034.7264.25453196AW003567Hs. 345309ESTs2.602E−034.6541.75408278AW876813Hs. 3343phosphoglycerate dehydrogenase2.866E−044.5235.5401677H18444BAI1-associated protein 32.177E−024.4034.5428106BE620016Hs. 182470PTD010 protein8.236E−044.3857.25427557NM_002659Hs. 179657plasminogen activator, urokinase recepto8.798E−054.3471418303AA215701Hs. 186541ESTs, Weakly similar to I38022 hypotheti2.749E−024.3244.75431319AA873350Hs. 302232ESTs5.146E−024.2081.75449986AW864502gb: PM4-SN0016-120400-004-b12 SN0016 Homo7.698E−024.1733.75458867AW995393gb: QV0-BN0042-170300-163-g12 BN0042 Homo5.074E−074.16126.25423720AL044191Hs. 23388hypothetical protein DKFZp434F03185.213E−034.1582.25433071BE150229Hs. 281564retinal outer segment membrane protein 11.922E−034.1532.25450335BE218355Hs. 201781ESTs, Weakly similar to B34087 hypotheti1.000E−024.1333.75448871BE616709Hs. 159265kruppel-related zinc finger protein hcKr5.425E−034.1047.25409795AI934808Hs. 219132ESTs, Weakly similar to T46338 hypotheti3.624E−034.0238.5401913ENSP00000249158*: CDNA3.560E−024.0033403796Target Exon1.239E−033.9744.25436068AK000038Hs. 300979ESTs, Weakly similar to I38022 hypotheti1.038E−023.9531.25449236AJ403126Hs. 26373Homo sapiens cDNA: FLJ23449 fis, clone H2.255E−023.9035.5431394AK000692Hs. 252351HERV-H LTR-associating 23.334E−033.8835.25454985AW849292gb: IL3-CT0215-020300-090-E06 CT0215 Homo2.711E−033.8842444531BE158822Hs. 282469ESTs, Weakly similar to I38022 hypotheti4.629E−033.8530.5441063AA913819Hs. 188025ESTs9.074E−023.7733.5431861AA521072Hs. 292128ESTs3.666E−043.7631.75402517Target Exon1.902E−023.7633.75454598AW809716gb: MR4-ST0124-241199-026-h09 ST0124 Homo7.123E−033.7536415477NM_002228Hs. 78465v-jun avian sarcoma virus 17 oncogene ho3.862E−043.75135.25411349AW838313gb: QV2-LT0051-030500-188-f06 LT0051 Homo7.860E−043.7035410267AW978005Hs. 12600N-ethylmaleimide-sensitive factor attach2.814E−033.6532.25454292N57559Hs. 82273hypothetical protein7.123E−033.6553404958Target Exon2.491E−033.6337.25403794Target Exon1.763E−033.6145412176AW898334gb: RC3-NN0070-270400-011-f02 NN0070 Homo7.511E−043.6030445402AI222415Hs. 147852ESTs6.522E−043.6034.5439760AL355741Hs. 21641Homo sapiens mRNA full length insert cDN7.856E−043.5537.5450875AK000724Hs. 301553karyopherin alpha 6 (importin alpha 7)2.938E−053.5283.25417551AI816291Hs. 82273hypothetical protein8.224E−043.52103.25429258AA448765gb: zx10e09.r1 Soares_total_fetus_Nb2HF85.001E−033.5133.25403324C2000428*: gi|7705383|ref|NP_057536.1|GC2.038E−023.5030411929AA098880Hs. 69297ESTs9.630E−033.5050418525AW450369Hs. 86937ESTs1.199E−023.4732.5403579Target Exon1.158E−023.4738.25449335AW150717Hs. 345728STAT induced STAT inhibitor 34.096E−033.47221.25414428BE296906Hs. 182625VAMP (vesicle-associated membrane protei5.786E−023.4543.5449785AI225235Hs. 288300hypothetical protein FLJ232312.255E−023.4535.25430389AL117429Hs. 240845DKFZP434D146 protein1.489E−023.4231.5454636AW811502gb: QV2-ST0145-061299-015-b04 ST0145 Homo2.830E−033.4238.75402889ENSP00000217123*: FLJ00118 protein (Fragm2.011E−033.4236.25405600C12001673: gi|9631264|ref|NP_048045.1|or4.808E−033.3936.5408120AW299900Hs. 267632TATA element modulatory factor 15.865E−033.3837.75446052AA358760gb: EST67699 Fetal lung II Homo sapiens c3.886E−053.3672409840AW502122gb: UI-HF-BR0p-ajr-c-08-0-Ul.r1 NIH_MGC_59.284E−053.3639.5415897H08323Hs. 268712ESTs7.148E−043.3530456782AK000462Hs. 132071ovarian carcinoma immunoreactive antigen1.409E−043.3538.75417732R36065gb: yg69h06.r1 Soares infant brain 1NIB H7.852E−043.3131.25402273Target Exon2.933E−023.3034440535AI590563Hs. 125910ESTs1.339E−023.3032.75450799AW407504gb: UI-HF-BM0-adk-g-12-0-Ul.r1 NIH_MGC_381.768E−033.2742.5403508Target Exon2.106E−023.2536443725AW245680Hs. 9701growth arrest and DNA-damage-inducible,5.085E−063.24412.5427536BE277141Hs. 115803gb: 601178666F1 NIH_MGC_20 Homo sapiens c9.859E−043.2038447306AI373163Hs. 170333ESTs2.254E−023.1739.5430071AA355986Hs. 232068transcription factor 8 (represses interl1.243E−033.15142.75410052AA525225Hs. 334630Homo sapiens cDNA FLJ14462 fis, clone MA1.903E−023.11107.75408952S79854Hs. 49322deiodinase, iodothyronine, type III2.471E−043.0935.5447819U90544Hs. 19710solute carrier family 17 (sodium phospha4.558E−023.0730.5433010AW970018gb: EST382097 MAGE resequences, MAGK Homo2.492E−033.0536.5442364AA993149Hs. 129895ESTs, Moderately similar to TBX3_HUMAN T2.193E−033.0532.5403582Target Exon5.956E−023.0233.75449180AI633836Hs. 195649ESTs5.785E−023.0230.25415994NM_002923Hs. 78944regulator of G-protein signalling 2, 24k5.146E−023.02117447135T58148gb: yb98g06.s1 Stratagene lung (937210) H2.012E−033.0062.5419555AA244416gb: nc07d11.s1 NCI_CGAP_Pr1 Homo sapiens2.196E−032.9995.5412568AI878826Hs. 74034caveolin 1, caveolae protein, 22 kD3.035E−022.9861444047AI097452Hs. 135095ESTs1.900E−022.9735.5403180Target Exon3.858E−042.9638.75402777C1002652*: gi|544327|sp|Q04799|FMO5_RABIT1.117E−022.9441.25433095AK001092Hs. 302480Homo sapiens cDNA FLJ10230 fis, clone HE1.902E−022.9333.75402070Target Exon7.109E−032.8935.5402124NM_031891: Homo sapiens cadherin 20, type8.621E−042.8836.25402663C1002133: gi|12697931|dbj|BAB21784.1| (AB8.917E−032.8830.5447721BE619620lysyl oxidase1.845E−032.8532.25422017NM_003877Hs. 110776STAT induced STAT inhibitor-23.480E−032.84108432877AW974111Hs. 292477ESTs4.422E−022.8467444863AW384082Hs. 104879serine (or cysteine) proteinase inhibito2.331E−022.8037.5444207AI565004Hs. 343475cathepsin D (lysosomal aspartyl protease4.591E−052.80194428568AC004755Hs. 302038Homo sapiens chromosome 19, fosmid 375027.492E−042.8046.25424042Y10601Hs. 137674ankyrin-like with transmembrane domains7.392E−032.7835.25440509BE410132Hs. 134202ESTs, Weakly similar to T17279 hypotheti4.906E−042.7894.75459721AI299050Hs. 143835gb: qn14d12.x1 NCI_CGAP_Lu5 Homo sapiens4.287E−022.7837.75402651NM_000721*: Homo sapiens calcium channel,2.705E−032.7751403545Target Exon2.012E−032.7743416666H73028Hs. 268992ESTs1.549E−032.7432.25447981R53772Hs. 8929hypothetical protein FLJ113624.160E−022.7437453560AA348626Hs. 5890hypothetical protein FLJ233064.700E−022.7441.75441269AW015206Hs. 178784ESTs4.422E−022.7264441427BE550625Hs. 126956ESTs4.030E−042.7234411283AW852754gb: PM1-CT0247-180100-009-c05 CT0247 Homo1.337E−0226733.5423433AK000497Hs. 128646hypothetical protein FLJ206397.487E−022.6634421993R22497Hs. 110571growth arrest and DNA-damage-inducible,4.117E−052.65371442702AW235697Hs. 130980ESTs2.107E−022.6538.25414890BE281095Hs. 77573uridine phosphorylase1.084E−032.6152.25401346BE041451hypothetical protein9.633E−032.6046.5408112AW451982Hs. 248613ESTs3.674E−022.6040.75432745AI821926gb: nt78f05.x5 NCI_CGAP_Pr3 Homo sapiens4.904E−042.5632.75404717NM_007313*: Homo sapiens v-abl Abelson mu8.134E−022.5630.75437180BE180234Hs. 281462Homo sapiens cDNA FLJ14793 fis. clone NT5.867E−032.5363417213BE257508Hs. 24719modulator of apoptosis 12.923E−052.5238.75422743BE304678Hs. 119598ribosomal protein L31.837E−022.5042.75457148AF091035Hs. 184627KIAA0118 protein7.111E−032.5060.25417079U65590Hs. 81134interleukin 1 receptor antagonist1.839E−022.49216.5427899AA829286Hs. 332053serum amyloid A19.814E−052.48799427413BE547647Hs. 177781hypothetical protein MGC56181.159E−022.4892.25422924AI480125Hs. 185777ESTs9.609E−032.4830.25412429AV650262Hs. 75765GRO2 oncogene1.649E−062.47246.25407654AW064121Hs. 279175ESTs1.297E−032.4640.5447650AW581199Hs. 161137ESTs, Moderately similar to I54374 gene1.292E−022.4540.5434180AA921757Hs. 116180ESTs9.459E−042.4550.25414141BE255083Hs. 145729hypothetical protein DKFZp564A11646.099E−032.4230.5410204AJ243425Hs. 326035early growth response 11.419E−032.41232446912AI347650Hs. 128521ESTs, Moderately similar to ALU4_HUMAN A2.408E−022.4037.25448429D17408Hs. 21223calponin 1, basic, smooth muscle5.621E−022.4031.5423499AW608884Hs. 28068ESTs3.008E−042.4031.75424236AW058114Hs. 7837phosphoprotein regulated by mitogenic pa2.290E−032.3747.5426521AF161445Hs. 170219hypothetical protein2.841E−022.3739.25446378AI905699Hs. 239760citrate synthase8.200E−042.3650.5400818Target Exon3.204E−032.3646.75454339AW381980gb: QV4-HT0316-091199-028-d05 HT0316 Homo1.969E−022.3539401942C17001396*: gi|3212355|pdb|1A4P|A Chain A1.759E−032.3336456147H41324Hs. 31581ESTs, Moderately similar to ST1B_HUMAN S6.882E−022.3235.5419305AI609195Hs. 304930ESTs5.144E−042.3132.75428403AI393048Hs. 326159leucine rich repeat (in FLII) interactin7.081E−022.3052456013T92048gb: yd54g12.s1 Soares fetal liver spleen7.837E−042.2930.25435992AI033259Hs. 118317Homo sapiens cDNA FLJ12088 fis, clone HE2.663E−022.2850.75424272AA360929Hs. 144439putative RNA binding protein3.780E−032.2834411231AW833501gb: QV4-TT0008-091199-025-e09 TT0008 Homo2.189E−032.2730.5434651BE616902Hs. 285313core promoter element binding protein9.321E−022.2745.75401376Target Exon1.773E−022.2737.75407338AA773213Hs. 200558gb: ab66f10.s1 Stratagene lung carcinoma1.038E−022.2639.5402012AF106069ubiquitin specific protease 159.915E−042.2536415759AA169182Hs. 182740gb: zp20e02.s1 Stratagene fetal retina 939.630E−032.2534.25431387AI878854Hs. 252229v-maf musculoaponeurotic fibrosarcoma (a8.945E−032.2335.5452236AI130858Hs. 143218ESTs5.457E−022.2231.25405443Target Exon1.202E−022.21132.75402878ENSP00000217420*: BA122O1.1 (A novel prot1.132E−032.2035.5422831R02504Hs. 332943ESTs7.682E−032.2039.75410895AW809679gb: MR4-ST0124-261099-015-f05 ST0124 Homo2.489E−022.2034.75405022Target Exon5.299E−022.1933.75403750C5001092: gi|6671939|gb|AAF23199.1|AC01674.249E−032.1930.75404187NM_019602: Homo sapiens butyrophilin-like9.022E−042.1953.25420701N42919Hs. 88630ESTs, Weakly similar to T14748 hypotheti9.286E−032.1931.75434495AW352170Hs. 129086Homo sapiens cDNA FLJ12007 fis, clone HE9.997E−032.1638.5427700AA262294Hs. 180383dual specificity phosphatase 63.340E−022.1584416348H65887Hs. 272163ESTs3.497E−042.1530.5426653AA530892Hs. 171695dual specificity phosphatase 13.337E−042.14399.5440249AI246590Hs. 249175ESTs9.290E−052.1453.75458568AI769067Hs. 127824ESTs, Weakly similar to T28770 hypotheti1.340E−022.11395.75459711BE386801Hs. 21858trinucleotide repeat containing 34.562E−022.1037.5409540AW409569gb: fh01e09.x1 NIH_MGC_17 Homo sapiens cD2.287E−032.0941.75437389AL359587Hs. 271586hypothetical protein DKFZp762M1153.208E−032.0987.75455968BE168828gb: QV1-HT0517-020400-145-f04 HT0517 Homo1.237E−032.0850.5419909AL136653Hs. 93675decidual protein induced by progesterone2.488E−032.0780.25407869AI827976Hs. 24391hypothetical protein FLJ136121.358E−032.07199456465M94065Hs. 94925dihydroorotate dehydrogenase5.155E−042.07121.75412541BE009398Hs. 74002nuclear receptor coactivator 19.647E−032.0441.25423935BE382429Hs. 268561hypothetical protein FLJ107261.246E−022.0338.75408022AW137208Hs. 176000ESTs2.571E−022.0342.25406140Target Exon1.081E−032.0348417076AW973454Hs. 238442ESTs, Moderately similar to ALU7_HUMAN A9.630E−032.0231.5442321AF207664Hs. 8230a disintegrin-like and metalloprotease (1.926E−042.02187431111AB033072Hs. 250015KIAA1246 protein1.272E−042.0137.25445132Z44811Hs. 14928hypothetical protein FLJ129035.935E−042.0149438808M73980Hs. 129053Homo sapiens NOTCH 1 (N1) mRNA, complete2.703E−032.0134.25406210Target Exon2.179E−022.0134.5422424AI186431Hs. 296638prostate differentiation factor2.333E-022.00153.5Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of Hep C− Liver over Trimean of Hep C+ liver Ratio R3: Difference of Trimean of Hep C− Liver vs. Trimean of Hep C+ Liver


[0346]

11







TABLE 4B








Pkey
CAT Number
Accession

















409540
1138613_1
AW409569 BE297044 BE295828


409840
1156071_1
AW502122 AW502125 AW501663 AW501720


410895
1226051_1
AW809679 AW809678 AW810113 AW810182 AW809900 AW809851 AW810110 AW810228 AW810342 AW810181




AW809632 AW809745




AW810372 AW809681 AW809792 AW809806 AW810452 AW809675 AW809964 AW810033 AW810111




AW809846 AW809847 AW809717


411231
1236356_1
AW833501 AW833506 AW833722 AW833332 AW833509 AW833511 AW833767 AW833339


411283
1237666_1
AW852754 AW852897 AW852757 AW852617 BE172755 AW835444


411349
1239900_1
AW838313 AW838353 AW838382 AW838207


412176
1281370_1
AW898334 H66426 AW899792


417732
1695922_1
R36065 R12062 R12616 Z43412


419555
185884_1
AA244416 AA244401


423053
224319_1
BE312679 BE314223 AA320990


429258
301917_1
AA448765 C04967 C03045 AA658293


432745
353673_1
AI821926 AA658826 AA564492 AA635129 AI791191


433010
357372_1
AW970018 AA573669 AA573622 R08736


446052
65988_1
AA358760 AA158850 AW062737 AW062738 AV656291


447135
70963_1
T58148 AW516579 AW059603


447721
73383_1
BE619620 AA448721 AI971709 AW175624 W24193 W24199 BE463718 AW193322 AI341487 AW072844




BE048584 AW593800 AI623222




AI983635 AW275114 AI952164 AI800442 AA385255 AW959076 AA977038 AI801910 AW513859 AW273202 AW337946




AA250733 AW273147




AI453134 AW235230 AI818468 AW166266 AI086791 AW300481 AI631778 AI561259 AW470887 AI207341




AW103087 AW193240 AI052433




AI128968 AW264492 AA327876 AI682412 AW771868 AI669677 AA448630 AA456607 AI128695 AI825128




AW195959 N79049 AI470892




AA902669 AI672486 AA769789 AI214684


449986
821463_1
AW864502 AW864369 AI678780


450799
847242_1
AW407504 W31274 AI738877


454339
1122972_1
AW381980 BE152244 BE152235 BE152238 BE152232


454598
1226062_1
AW809716 AW810152 AW809646 AW809747 AW809738 AW809826 AW809996 AW809798 AW809802 AW809840




AW809695


454636
1227589_1
AW811502 AW811521 AW811548 AW811471 AW811511 AW811508


454985
1248105_1
AW849292 AW849431 AW849422 AW849428 AW849420 AW849424 AW849427


455968
1391117_1
BE168828 BE168830 BE168823 BE168928 BE168820 BE168826


456013
1411982_1
T92048 BE242744


458867
80304_1
AW995393 AJ403118






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0347]

12








TABLE 4C








Pkey
Ref
Strand
Nt_position


















400818
8569994
Plus
172644-172765, 173085-173200


401149
7229925
Plus
73117-74019


401346
9926605
Minus
12031-13032


401376
7417809
Plus
40584-40963


401677
9965537
Minus
62856-63086, 63603-63884


401913
9369520
Minus
33753-33904


401942
4982556
Minus
130749-131044


402012
7407997
Minus
111771-111909, 112107-112226,





112519-112694


402070
8117335
Minus
68256-68484


402124
4033680
Plus
164206-164459


402273
2979528
Plus
28990-29203, 32299-32402,





32474-32668


402517
9798106
Plus
17569-17721


402651
7960391
Plus
174215-174380


402663
8077020
Minus
14155-14364


402777
9588235
Plus
126786-126948


402878
9908870
Minus
56133-56522


402889
9931133
Plus
89392-89498, 90358-90571


403180
7523976
Minus
63603-63759


403324
8440025
Minus
107104-107309


403508
7630896
Plus
5570-5719


403545
8078400
Plus
25293-25640


403579
8101179
Minus
36167-36365


403582
8101186
Plus
18308-18458


403750
7229814
Minus
133638-134110


403794
8096910
Plus
163292-163884


403796
8099896
Minus
75073-77664


404187
4481839
Plus
7644-7991


404501
7229859
Minus
37270-37526


404717
9838068
Minus
165900-166052, 169415-169599,





171430-171607, 172254-172338


404958
7407941
Minus
2731-4531


405022
7330304
Plus
217163-217439


405278
6139075
Minus
3863-3965, 4823-4891, 5439-5529,





6043-6170, 6344-6562, 7835-7990


405443
7408143
Plus
90716-90887, 101420-101577


405600
5923640
Plus
26662-27225


406140
9168231
Minus
49887-50219


406210
7341959
Plus
58546-58687






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0348] Table 5A lists about 164 genes up-regulated in Hepatitis C positive liver tissues at a time before pegylated-interferon-alpha plus ribavirin treatment that was found to be non-responsive (non-responders) to the treatment compared to Hepatitis C positive liver tissues at a time before pegylated-interferon-alpha plus ribavirin treatment that was found to be responsive to the treatment (responders). These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of non-responders to the “weighted average” of responders was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the non-responders was set to the trimean of the non-responders. The “weighted average” of the responders was set to the either 10 or the trimean of the different responders, whichever value was greater to eliminate ratios with a denominator of zero or less. Tables 5B and 5C relate to Table 5A as 3B and 3C relate to 3A.
13TABLE 5APkeyExAccnUnigeneIDUnigene TitleR1R2R3454075R43826Hs. 16313Kruppel-like zinc finger protein GLIS26.136E−027.1564.75430273AI311127Hs. 125522ESTs7.404E−026.3560444342NM_014398Hs. 10887similar to lysosome−associated membrane5.766E−036.2577.5424381AA285249Hs. 146329protein kinase Chk23.476E−026.1752.75444104AW296150Hs. 177151ESTs7.353E−025.9757447261NM_006691Hs. 17917extracellular link domain-containing 15.091E−025.3353426990AL044315Hs. 173094Homo sapiens mRNA for KIAA1750 protein,7.404E−025.3152.75404493NATarget Exon1.485E−025.1342412747AW994222gb: RC3-BN0036-250200-012-e02 BN0036 Homo5.091E−025.0751.75404075NATarget Exon5.132E−024.9741454525BE280421Hs. 94499ESTs5.681E−034.9550.5445098AL050272Hs. 12305DKFZP566B183 protein1.812E−024.9239.25402012AF106069ubiquitin specific protease 157.404E−024.9144452826BE245286Hs. 301636peroxisomal biogenesis factor 62.299E−024.9162.5407828AW959500Hs. 49597retinoic acid induced 24.200E−024.7549.5417123BE326521Hs. 159450ESTs3.381E−024.7043.25418483W26076Hs. 221847ESTs5.132E−024.7041.25414308AI740705Hs. 126485hypothetical protein FLJ12604; KIAA16925.051E−024.5542.25426106AI678765Hs. 21812ESTs3.476E−024.4953.25437233D81448Hs. 339352Homo sapiens brother of CDO (BOC) mRNA,6.136E−024.4759.25403807NANM_031889: Homo sapiens enamelin (ENAM),5.681E−034.3436.75432250AA452088Hs. 274170Opa-interacting protein 21.833E−024.3239.75452455N25153Hs. 61661ESTs, Weakly similar to AF174605 1 F-box2.251E−024.2540459171AW967801Hs. 64783ESTs, Weakly similar to T42705 hypotheti5.132E−024.1735.5435791AA243086Hs. 25204chondroitin 4-O-sulfotransferase 21.485E−024.1741.25426798AA385062Hs. 130260ESTs5.132E−024.1332.5424017AA333789gb: EST37925 Embryo, 9 week Homo sapiens6.136E−024.1035.25446627AI973016Hs. 15725hypothetical protein SBBI483.476E−024.0672442269AI797066Hs. 201995ESTs1.450E−024.0531447698AI420156Hs. 326733ESTs1.168E−024.0547.25432336NM_002759Hs. 274382protein kinase, interferon-inducible dou7.404E−024.0235408711AW376061Hs. 63335ESTs, Moderately similar to A46010 X-lin7.404E−024.0231427867NM_005073Hs. 2217solute carrier family 15 (oligopeptide t8.877E−033.9749.5437990AI686579Hs. 121784ESTs5.132E−023.9734444640AL133933Hs. 64310interleukin 11 receptor, alpha7.353E−023.9730.75437063AA351109Hs. 5437Tax1 (human T-cell leukemia virus type I7.404E−023.9533.25428108AA421452ESTs, Weakly similar to KIAA0926 protein2.807E−023.9531.5412055AA099907Hs. 271806ESTs, Weakly similar to ALU1_HUMAN ALU S5.091E−023.9333417936X01059Hs. 82963gonadotropin-releasing hormone 1 (leutin4.200E−023.9237.5410099AA081630KIAA0036 gene product1.485E−023.9180.75410541AA065003Hs. 64179syntenin-2 protein5.766E−033.85123.25424259AK001776Hs. 143954hypothetical protein FLJ109142.299E−023.8239.75458381AI041873Hs. 132148ESTs5.132E−023.8236.25441897AI264686Hs. 23921hypothetical protein DKFZp547A0235.091E−023.7742.75405411ENSP00000252213: SODIUM BICARBONATE COTRA5.132E−023.7564.25427509M62505Hs. 2161complement component 5 receptor 1 (C5a I3.476E−023.7530.25428151AA422028Hs. 171136ESTs3.476E−023.7232422553AI697720Hs. 171455ESTs, Weakly similar to T31613 hypotheti5.091E−023.6978401842NATarget Exon7.404E−023.6738433365AF026944Hs. 293797ESTs5.091E−023.6568402200AL080200DKFZP434F122 protein2.275E−023.6541437191NM_006846Hs. 331555serine protease inhibitor, Kazal type, 56.136E−023.6331.75444196AW139633Hs. 279582GTP-binding protein Sara5.132E−023.6035403436NM_006548*: Homo sapiens IGF-II mRNA-bind2.299E−023.5939.5435128AF176832Hs. 47005low density lipoprotein-related protein5.681E−033.5739.25422240R60594Hs. 29002KIAA1706 protein5.132E−023.5732.75431726NM_015361Hs. 268053KIAA0029 protein3.444E−023.5230.25407366AF026942Hs. 271530gb: Homo sapiens cig33 mRNA, partial sequ1.485E−023.5191404109C6000844*: gi|7497891|pir||T20194 hypothe1.468E−023.5033426788U66615Hs. 172280SWI/SNF related, matrix associated, acti7.404E−023.4632415822D59243gb: HUM526E07B Clontech human placenta po2.299E−023.4552.25449922AA004731gb: zh93g05.s1 Soares_fetal_liver_spleen5.132E−023.4332.75458159AA883831Hs. 252924ESTs9.243E−033.4244.5446650AB016625Hs. 15813solute carrier family 22 (organic cation5.132E−023.4238.25450011AW071789Hs. 99233ESTs5.681E−033.4238432706NM_013230Hs. 286124CD24 antigen (small cell lung carcinoma8.760E−023.4234.5447898AW969638Hs. 1123186.2 kd protein3.476E−023.4046.75439478AF049460Hs. 6574deformed epidermal autoregulatory factor3.476E−023.3650.25414709AA704703Hs. 77031Sp2 transcription factor2.299E−023.3563.5450404AA742544Hs. 159231hypothetical protein FLJ215515.132E−023.3534429505AW820035Hs. 278679a disintegrin and metalloproteinase doma3.476E−023.2532.25440258AI741633Hs. 125350ESTs9.243E−033.2432.5449713AW027025Hs. 345528ESTs3.476E−023.2438432791NM_014554Hs. 66450sentrin/SUMO-specific protease7.404E−023.2238.5408570AL046406Hs. 103483KIAA1798 protein7.302E−023.2238403512NAC3000579*: gi|12643308|sp|Q9Y4K1|AIM1_HUM1.485E−023.1346.75406303C16000922: gi|7499103|pir||T20903 hypothe3.444E−023.0730.5449137AW134478Hs. 196033ESTs7.268E−033.0552401807C7001350: gi|6578126|gb|AAF17706.1|AF04965.132E−023.0531.5423748AI149048Hs. 30211hypothetical protein FLJ223135.132E−023.0238448497BE613269Hs. 21893hypothetical protein DKFZp761N06241.168E−023.0234.25447164AF026941Hs. 17518Homo sapiens cig5 mRNA, partial sequence5.132E−022.98128450446AI696334Hs. 14450ESTs1.468E−022.9743.75435938AI248774Hs. 126707hypothetical protein FLJ114574.970E−022.9735.5422744AW268803Hs. 119640hBKLF for basic kruppel like factor4.128E−022.9734.5453397AA035378Hs. 31222ESTs, Weakly similar to DRPL_HUMAN ATROP5.132E−022.9634.25454204AW816498gb: QV0-ST0236-171299-075-b02 ST0236 Homo3.444E−022.9530.25443041AA558677Hs. 8928hypothetical protein FLJ202912.299E−022.9340.5422366T83882Hs. 97927ESTs4.164E−022.9231.75429982AW449534Hs. 99607hypothetical protein FLJ138419.366E−032.7751.25447278AI934935Hs. 158669ESTs8.760E−022.7733.75431250BE264649Hs. 251377taxol resistance associated gene 37.404E−022.7685.5419270NM_005232Hs. 89839EphA17.404E−022.7645.75425109R37456Hs. 184793Homo sapiens cDNA: FLJ21880 fis, clone H3.349E−022.7535417214AW192804Hs. 24719modulator of apoptosis 15.766E−032.7452.25430259BE550182Hs. 127826RalGEF-like protein 3, mouse homolog5.766E−032.7437.75427765AA412247Hs. 111970ESTs5.132E−022.7233.5409947AA078629Hs. 27301ESTs3.444E−022.7237443493AI074053Hs. 127146ESTs3.349E−022.7135449394AA004368Hs. 18160Homo sapiens cDNA FLJ11550 fis. clone HE3.476E−022.7045.75405348NAC7001664: gi|12698061|dbj|BAB21849.1| (AB3.476E−022.7042.75448030N30714Hs. 325960membrane-spanning 4-domains, subfamily A1.468E−022.6839418203X54942Hs. 83758CDC28 protein kinase 25.132E−022.6642.75422833BE141312gb: MR0-HT0078-051099-002-h06 HT0078 Homo1.468E−022.6538.75448124AI470454Hs. 199150ESTs3.444E−022.6037401536NM_002530*: Homo sapiens neurotrophic tyr8.760E−022.5341.75456370AA234938Hs. 87384ESTs3.476E−022.5052.25404607NATarget Exon5.132E−022.5048.5436729BE621807transmembrane 4 superfamily member 17.353E−022.4935404801NM_004286*: Homo sapiens GTP binding prot2.299E−022.4650.25414173N27495Hs. 5565hypothetical protein FLJ226262.275E−022.4539.75413719BE439580Hs. 75498small inducible cytokine subfamily A (Cy3.476E−022.4564413550W03011Hs. 306881MSTP043 protein8.705E−022.4432.75405416C19001058*: gi|5080758|gb|AAD39268.1|AC003.476E−022.4231.25458388W28887Hs. 133142Homo sapiens cDNA: FLJ22153 fis, clone H7.404E−022.4230.5432886BE159028Hs. 279704chromatin accessibility complex 11.485E−022.4134.25419497NM_006410Hs. 90753Tat-interacting protein (30 kD)8.760E−022.4033.5443743AI084210Hs. 303925ESTs, Weakly similar to A46010 X-linked8.760E−022.3934.5444811AW137791Hs. 148419ESTs1.485E−022.3941430291AV660345Hs. 238126CGI-49 protein7.404E−022.3941459119AW844498Hs. 306121CDC20 (cell division cycle 20, S. cerevi5.132E−022.3838.75432195AJ243669Hs. 8127KIAA0144 gene product3.476E−022.3744.75416046H16054Hs. 297644ESTs8.705E−022.3646.5421650AA781795Hs. 122587ESTs3.444E−022.3559.5455886BE153549Hs. 293818ribosomal protein L75.132E−022.3440409775AW499605gb: UI-HF-BP0p-ain-c-05-O-Ul.r1 NIH_MGC_55.132E−022.3249402601Target Exon5.132E−022.3155.5439602W79114Hs. 58558ESTs7.353E−022.3041458946AA009716Hs. 42311ESTs6.136E−022.3032.75419445AA884471Hs. 90449Human clone 23908 mRNA sequence3.476E−022.3031.5439242BE167324Hs. 53996ESTs, Weakly similar to ZN42_HUMAN ZINC9.243E−032.2950.5444301AK000136Hs. 10760asporin (LRR class 1)5.132E−022.2850.75435706W31254Hs. 7045GL004 protein7.404E−022.2746.5405418NATarget Exon5.766E−032.2753.25452032BE244005Hs. 27610retinoic acid- and interferon-inducible7.268E−032.2553.5444830AI198854Hs. 145437ESTs6.136E−022.2432428075AW205525Hs. 212511ESTs5.132E−022.2348.75446169AA398857Hs. 14142nudix (nucleoside diphosphate linked moi9.366E−032.2331.25453405AI567972ESTs, Highly similar to AF161437 1 HSPC37.302E−022.2248441942AF182645Hs. 8024IK cytokine, down-regulator of HLA II7.404E−022.1938.5417640D30857Hs. 82353protein C receptor, endothelial (EPCR)7.353E−022.1937.5425225NM_003450Hs. 155204zinc finger protein 1742.251E−022.1840.25430227AI924441Hs. 236218TAT-INTERACTIVE PROTEIN, 72-KD7.404E−022.1749.5458704AI343613Hs. 156600ESTs4.200E−022.1733.25404973NATarget Exon5.091E−022.1647.25448362AA641767Hs. 21015hypothetical protein DKFZp564L0864 simil1.485E−022.1437428315AA688152Hs. 98505ESTs6.091E−022.1344.75415749BE262529Hs. 78771phosphoglycerate kinase 17.166E−032.1239419104AA709154Hs. 191514ESTs5.132E−022.1133437849AA769680Hs. 18768ESTs3.476E−022.1136.25428726AA432195Hs. 98694ESTs5.132E−022.0943.25440495AA887212Hs. 14161hypothetical protein DKFZp434119301.485E−022.0841.75446337AW272746Hs. 239818phosphoinositide-3-kinase, catalytic, be5.132E−022.0739.5404975AL042279uncharacterized hypothalamus protein HT07.302E−022.0638.25415599Z44487Hs. 8763gb: HSC21F081 normalized infant brain cDN7.353E−022.0534.75416404AA180138Hs. 107924ESTs7.404E−022.0541.5439277R80061Hs. 164478hypothetical protein FLJ21939 similar to8.649E−022.0533.75430108AA465294Hs. 291750ESTs1.485E−022.0531.5422746NM_004484Hs. 119651glypican 37.404E−022.02144.5458410H20380Hs. 200250ESTs, Moderately similar to ALU7_HUMAN A8.760E−022.0139.25410204AJ243425Hs. 326035early growth response 11.485E−022.01148.75441616BE569122RNA-binding protein (autoantigenic)5.091E−022.0131.25414395BE304888Hs. 279834EST7.353E−022.0040.25456999AA319798Hs. 298581eukaryotic translation elongation factor3.476E−022.0031.25Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of non-responders over Trimean of responders Ratio R3: Difference of Trimean of non-responders vs. Trimean of responders


[0349]

14







TABLE 5B








Pkey
CAT Number
Accession







409775
1154112_1
AW499605 AW501372 AW503065 AW500923 AW501639


410099
117647_1
AA081630 T08671 AI174254 D83874 AW959843 AA364503




AA693467 AW993370 BE327037 AA167714 N79906 AW901977 AW901980




W52882 T07735 AA484549 W60090 D52685 T23811 BE327043 AW901768 BE551237




AA917004 AA716027 AI439658 AA283724 AI805992




AI457096 AA084618 BE467736 AI092635 AI887863 AI697593 AA436618 AI167419




AI418634 T31586 AA436630 AA706191 AI041169




AI422304 T03534 AA211402 AI204899 AI366472 AW827081 AA788593 T32736




AI767935 AA167791 AA747914 AA663870 AI865504


412747
1324696_1
AW994222 AW994377


415822
155791_1
D59243 D63202 AA169716


422833
221904_1
BE141312 BE141417 BE141389 AA317747


424017
234338_1
AA333789 AA334317 AW966107


428108
287154_1
AA421452 BE302040 AI204456 AA833751 AA421483 AI825059


436729
42585_1
BE621807 AI445461 AI346835 AI453743 AI564644 AI928364 AW984527 BE156214




AI694111 AI591358 C17504 C17476 C17963 C18304




AW071625 AI678712 C17732 D57559 H61762 AI720939 AI262930 H27252 AA479712




AI927769 AA291465 AA155661 AI963432 AI567995




AA421678 AI925607 AA292956 AA192448 AW192593 AI865838 AI696905 AI871950




AI911921 BE619741 BE439796 AI161312 AI597801




AI424384 AI093510 AI240988 AW820230 AI492554 BE044033 AW262737 AW008570




AA043216 AW629505 AA136645 AA037722 AA706057




AA088439 AW806193 AW806183 AA479834 BE501957 AA129574 R38114 AA649494




AA524526 BE327120 AW572531 BE219784 BE349186




AW015724 AA043217 AW772000 AI799814 AI671727 AW779725 AA502832 AI470033




AA129575 W38161 AI972739 AA404570 AA627686




AA723200 AA147228 AA903050 AI990245 AI075878 T32487 C06123 AA157944 AI800106




W60075 AI859160 AA478328 AW673152 AA182640




AI990827 AW275048 AW103470 AI298935 AW471421 R79190 AW085158 W45410




AW300456 AA662517 T55840 AI823466




AI692846 AA962397 AW191997 AA136658 AI251817 BE044134 AW339104 AW517762 AA724739




R79933 AA411100 AA191349 AA037696




AA190966 AA757735 AW772283 AA010631 H80983 AI769516 H64985 AI061065 AI950693




AA085492 AI245632 H28594 AW088968 BE156360




AI349390 AI621320 AI738844 AW194272 AA148284 AA953883 C06365 AA487893




AI927217 AI918523 AI453453 AI798502 AI189366




AI261359 AI032569 AW338678 AI972899 AI500576 AI872628 AI693030 Z28771




AI985583 AI363829 AW339301 AA581093 AI650338 W60032




AA603586 AI686240 AW242958 AA719173 AI745717 AW675302 AI582462 AI244845




AI565439 F09579 AI918453 AA035576 AI472527




AW351556 AA191414 AW674145 D57558 AI446740 D57845 AI589264 C05782 AA722206




AI432033 R21752 BE157510 AI829640 AI468237




AW384233 AA989662 AI865912 AW197954 AI344941 X75684 AI344943 AW583310 AA988297




AI334860 AI348877 AI798415 D11921




AI377596 AI983655 AI744233 C06111 AI248307 AA948565 AI224807


441616
52161_2
BE569122 BE43964 BE621682 BE548066 N73920 AA164369 W80481




AI301065 N36665 AW071970 AW263496 AI499701 AA001425




AA781414 AI479737 AA922117 AW104450 AA026632 N30835 AW274584 AW173171 AW817587




R94765 AA019198 AA054252 H03499




AA954721 AI926512 AI685317 AI393574 AW166832 AA742324 AI749979 AA972701 AA434451




AI305153 AA678370 F12140 H16890 AI356800




AW613806 R73589 AI280399 AW627592 AI334386 AI200095 W47269 AI491703 AA837589 AI073728




AI367984 AI422897 AI282124 AA053948




AI218584 H84116 AI273274 AA731678 AW338258 AI347082 AA256494 AW022998




AA743354 AI698561 R69295 AI280442 AA480586




AA026691 AI948431 AI381988 AA417566 BE564055 AA365458 AA054003


449922
81925_1
AA004731 AA004787 AI240768


453405
96607_1
AI567972 AW196160 AA035448 AA934760 N70743 AA862404 AA485737




AA885091 AI926381 AA885115 AA284561 AA284560 C00839




W01732


454204
1050597_1
AW816498 AW808791 AW808515 AW808379 AW808532 AW808605 AW808977




AW808816 AW178676 AW178486 AW808514 AW178483




AW178485 AW809007 AW808524






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0350]

15








TABLE 5C








Pkey
Ref
Strand
Nt_position







401536
7960358
Plus
100193-100336, 103486-103671


401807
7331536
Plus
152325-152912


401842
7684597
Plus
111602-111746


402012
7407997
Minus
111771-111909, 112107-112226,





112519-112694


402200
7689783
Plus
28877-29398


402601
7705237
Minus
170567-170936, 171175-171610,





173128-173238, 173317-173425,





173505-173766


403436
9719642
Minus
96248-96361, 98626-98757


403512
7656757
Minus
114487-114610


403807
8439933
Minus
162963-165773


404075
7652011
Plus
53692-53938


404109
9211742
Minus
144675-144928, 151899-152064


404493
8140670
Plus
38930-39208


404607
7328770
Plus
28477-28591


404801
4582132
Plus
89110-89482, 94224-94347


404973
3213020
Plus
101602-102591


404975
3419864
Minus
86096-86605


405348
2914717
Minus
43310-43462


405411
3451356
Minus
17503-17778, 18021-18290


405416
6984492
Minus
28380-30235


405418
6997292
Plus
51839-51953


406303
8575868
Plus
173622-173786






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0351] Table 6A lists about 284 genes up-regulated in Hepatitis C positive liver tissues at a time before pegylated-interferon-alpha plus ribavirin treatment that was found to be responsive (responders) to the treatment compared to Hepatitis C positive liver tissues at a time before pegylated-interferon-alpha plus ribavirin treatment that was found to be non-responsive to the treatment (non-responders). These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of responders to the “weighted average” of non-responders was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the responders was set to the trimean of different non-responders. The “weighted average” of the non-responders was set to the either 10 or the trimean of different non-responders, whichever value was greater to eliminate ratios with a denominator of zero or less. Tables 6B and 6C relate to Table 6A as 3B and 3C relate to 3A.
16TABLE 6APkeyExAccnUnigeneIDUnigene TitleR1R2R3433156R59206Hs. 17519Homo sapiens cDNA: FLJ22539 fis, clone H9.366E−039.9791.25425701AA361850Hs. 322149Human clone 137308 mRNA, partial cds2.299E−028.9086.75453822NM_014116Hs. 35416PRO0132 protein7.404E−028.1571.75421160AL080215Hs. 102301Homo sapiens mRNA; cDNA DKFZp586J0323 (f8.705E−027.3274.5424375AF070547Hs. 146312Homo sapiens clone 24820 mRNA sequence7.404E−027.2775435147AL133731Hs. 4774Homo sapiens mRNA; cDNA DKFZp761C1712 (f5.766E−036.52104.5416686H75435Hs. 169404ESTs3.476E−026.4775.75451078AI927694Hs. 340945ESTs5.132E−026.4758.25432474AA584042gb: nn65e09.s1 NCI_CGAP_Lar1 Homo sapiens3.476E−026.4054415374F06904Hs. 8346ESTs2.299E−026.3062.5427958AA418000Hs. 98280potassium intermediate/small conductance5.681E−035.9791408806AW847814Hs. 289005Homo sapiens cDNA: FLJ21532 fis, clone C1.485E−025.8254.75401757Target Exon2.299E−025.7759.75400864Target Exon5.132E−025.6355.5432425AF070619Hs. 274539Homo sapiens clone 24481 mRNA sequence7.404E−025.6065.5401529Target Exon5.132E−025.5747.75451408AI795947Hs. 209596ESTs3.476E−025.5560.5444813AW054834Hs. 210356ESTs5.132E−025.4057.5418432M14156Hs. 85112insulin-like growth factor 1 (somatomedi7.404E−025.3649419831AW448930Hs. 5415ESTs7.353E−025.1751.5436593AW085002Hs. 156187ESTs2.698E−025.1349420315NM_006299Hs. 96448zinc finger protein 1937.353E−025.0554438098AI076370Hs. 134037ESTs7.404E−025.0543.5411755BE327036Hs. 117494ESTs2.807E−025.0244442719H12048Hs. 91564ESTs8.705E−025.0241449625NM_014253odz (odd Oz/ten-m, Drosophila) homolog 17.353E−024.9263407269AJ245210gb: Homo sapiens mRNA for immunoglobulin4.164E−024.9244.25403609C3001199: gi|7494834|pir||T15308 hypothet9.366E−034.8251.25421417AA291004Hs. 326088ESTs1.468E−024.8240400279NM_004581*: Homo sapiens Rab geranylgeran3.476E−024.8144.75435545AA687415Hs. 28107ESTs5.681E−034.7250.75445757AW449065Hs. 13264KIAA0856 protein2.299E−024.7040.75401593Target Exon2.299E−024.7048.5442552R20624son of sevenless (Drosophila) homolog 13.476E−024.7045.25418660AW161979Hs. 100914hypothetical protein FLJ103525.132E−024.7039.5435368AI056230Hs. 117122ESTs5.766E−034.5783.25434253AI393345Hs. 116215ESTs5.091E−024.5749.75407578BE464417Hs. 131035ESTs, Weakly similar to CA24_HUMAN COLLA7.404E−024.5748.25424014AA333653Hs. 24790KIAA1573 protein9.366E−034.5541440798AB020648Hs. 7426KIAA0841 protein5.766E−034.5244.25426075AW513691Hs. 270149ESTs, Weakly similar to 2109260A B cell6.136E−024.5243.25455358AW902641gb: QV3-NN1024-100500-181-d08 NN1024 Homo7.404E−024.5041.75449621AI656060Hs. 195726ESTs5.132E−024.4744459674AA180511gb: zp53f03.r1 Stratagene NT2 neuronal pr7.404E−024.4279433085AA781270Hs. 220943ESTs3.444E−024.4050.25434995AW974995gb: EST387100 MAGE resequences, MAGN Homo7.404E−024.4040456250U09196Hs. 82520polymerase (DNA-directed), delta 47.404E−024.3844.75425594AA649842Hs. 269334ESTs2.299E−024.3834.75402439C1002445*: gi|4506787|ref|NP 003861.1|IQ7.404E−024.3743429355AW973253Hs. 292689ESTs7.404E−024.3546.75453751R36762Hs. 101282Homo sapiens cDNA: FLJ21238 fis, clone C9.366E−034.3263.75444636T96667Hs. 17877ESTs5.132E−024.3046.25401197ENSP00000229263*: HSPC213.8.760E−024.2739.25432014H66741Hs. 38540ESTs, Weakly similar to ALU4_HUMAN ALU S7.404E−024.2761.25420556AA278300Hs. 124292Homo sapiens cDNA: FLJ23123 fis, clone L1.485E−024.2559.75413329AI056885Hs. 133539ESTs9.366E−034.2540.25427450AB014526Hs. 178121KIAA0626 gene product3.476E−024.2441.25431858AA732530Hs. 184019Homo sapiens clone 23551 mRNA sequence1.792E−024.2245.75408852AW291435Hs. 254961ESTs1.450E−024.2239.5433171AA579425gb: nf37c08.s1 NCI_CGAP_Pr2 Homo sapiens3.476E−024.2043.75430920U96402Hs. 248132goosecoid-like7.404E−024.1742.75405206Target Exon8.705E−024.1338.75453815AL135365Hs. 126857Homo sapiens cDNA FLJ12936 fis. clone NT3.476E−024.0744440573BE550891Hs. 270624ESTs5.132E−024.0532.25411047AW938479gb: CM0-DT0057-290200-253-h06 DT0057 Homo1.468E−024.0439.5400738Target Exon1.833E−024.0036.5423983AA333261gb: EST37476 Embryo, 8 week 1 Homo sapien2.299E−024.0032.5403686C4001366*: gi|9837427|gb|AAG00570.1|AF2871.485E−023.9539.75418677S83308Hs. 87224SRY (sex determining region Y)-box 51.468E−023.9452.25453861AI026838Hs. 30120ESTs, Weakly similar to NUCL_HUMAN NUCLE5.132E−023.9333.75401778AA463798MCT-1 protein5.766E−033.9040.75448854AW245617Hs. 77703hypothetical protein FLJ115067.404E−023.8932.5456327H68741Hs. 38774ESTs3.476E−023.8549.5431300AA502346gb: ne26b03.s1 NCI_CGAP_Co3 Homo sapiens5.091E−023.8256.75438146Z36842Hs. 57548ESTs2.299E−023.8235443222AW390067Hs. 132762ESTs2.275E−023.8231.75457247AA458605KIAA1681 protein9.366E−033.8291.5406299Target Exon5.132E−023.8030430383AI861854Hs. 210778hypothetical protein FLJ109892.275E−023.7749.75453478AF083898Hs. 33021neuro-oncological ventral antigen 26.091E−023.7732439601AB029032Hs. 6606KIAA1109 protein7.404E−023.7649.75421828AW891965Hs. 279789histone deacetylase 33.476E−023.7642.75406528Target Exon3.476E−023.7545.5451614AA298812Hs. 98539ESTs7.353E−023.7538.25430320BE245290Hs. 239218uncharacterized hypothalamus protein HCD5.132E−023.7536.5441516F06700Hs. 7879interferon-related developmental regulat7.404E−023.7330.75430730T71087Hs. 44197hypothetical protein DKFZp564D04622.299E−023.7244.25430446AF131782Hs. 241438Homo sapiens clone 24941 mRNA sequence5.766E−033.7246.25414899AW975433Hs. 36288ESTs5.132E−023.6933447695AI420116Hs. 161269ESTs2.299E−023.6930.25402842ENSP00000241325*: DJ947L8.1.3 (novel CUB5.681E−033.6530.5446001AI827473Hs. 346435ESTs9.366E−033.6346.25402836ENSP00000251163*: Membrane-associated gua4.164E−023.6057.25410469AW749723Hs. 43586gb: QV3-BT0511-081299-035-d01 BT0511 Homo8.705E−023.6037421471U90545Hs. 327179solute carrier family 17 (sodium phospha3.476E−023.58110.75456962BE272095Hs. 167791reticulocalbin 1, EF-hand calcium bindin6.136E−023.5735.75400301X03635Hs. 1657estrogen receptor 11.485E−023.5766.25438099AA777767Hs. 187562ESTs4.200E−023.5637.75441243AI767056Hs. 193002ESTs2.299E−023.5553416401N80139Hs. 268916ESTs2.299E−023.5549.75402942Target Exon5.681E−033.5535.5451351AW058261Hs. 321435ESTs, Weakly similar to ALU1_HUMAN ALU S5.132E−023.5338457565BE294029Hs. 279903Ras homolog enriched in brain 22.299E−023.5235419287X91906Hs. 89872chloride channel 5 (nephrolithiasis 2, X9.366E−033.5231.75430807S74019Hs. 247979pre-B lymphocyte gene 12.807E−023.5035.5400302N48056folate hydrolase (prostate-specific memb3.476E−023.4863.75404657C9000088*: gi|6754878|ref|NP_035061.1|nu1.468E−023.4453.75445664AW968638Hs. 237691ESTs, Weakly similar to KIAA0601-protein2.807E−023.4239.5436336AJ011378Hs. 186927ESTs4.056E−023.4233.25409959BE349470mucin 6, gastric9.120E−033.4047.5458443AV647010Hs. 27glycine dehydrogenase (decarboxylating;4.200E−023.4047.25411214BE046571gb: hn40g11.x1 NCI_CGAP_RDF2 Homo sapiens2.299E−023.3839.25437556AI223078Hs. 136776ESTs9.243E−033.3536.25425295AA431366Hs. 37251ESTs7.404E−023.3250409440AI239685Hs. 12315hypothetical protein FLJ116085.091E−023.3230.75405543C2002468*: gi|3334856|emb|CAA11279.1| (AJ4.970E−023.3035.75449986AW864502gb: PM4-SN0016-120400-004-b12 SN0016 Homo2.299E−023.2560.75451790AA927403Hs. 3803reticulon 25.132E−023.2441.5456350BE246762Hs. 89499arachidonate 5-lipoxygenase5.132E−023.2240.5436169AA888311Hs. 17602Homo sapiens cDNA FLJ12381 fis, clone MA2.251E−023.2233.25421497BE145334Hs. 194637BANP homolog, SMAR1 homolog5.766E−033.2230449959AI076834Hs. 21160ESTs4.200E−023.2035.25441189AW450266Hs. 257276ESTs7.353E−023.1931.75411399AI144416Hs. 22248ESTs7.404E−023.1531.75447896AI436124Hs. 294069Homo sapiens cDNA FLJ13384 fis, clone PL2.299E−023.1562420728AA767718Hs. 93581hypothetical protein FLJ105125.132E−023.1541.25444959AV652120Hs. 213232ESTs, Weakly similar to 2004399A chromos1.485E−023.15117424049AB014524Hs. 138380KIAA0624 protein5.597E−033.1361.25444363AI142827Hs. 143656ESTs8.760E−023.1235.5437056AI147061gb: ok33a11.s1 Soares_NSF_F8_9W_OT_PA_P_S5.091E−023.1132.75408931AA251995Hs. 334648poly(A) polymerase alpha2.299E−023.1160447135T58148gb: yb98g06.s1 Stratagene lung (937210) H1.468E−023.1034.75451513AI800283Hs. 155787ESTs2.780E−023.0831.75430448AI633553Hs. 13303Homo sapiens cDNA: FLJ21784 fis, clone H5.010E−023.0731.75413922AI535895Hs. 221024ESTs3.476E−023.0756440700AW952281Hs. 296184guanine nucleotide binding protein (G pr1.485E−023.0696.25442049AA310393Hs. 190044ESTs7.404E−023.0536.25445159AI631036Hs. 196843ESTs5.132E−023.0330.5402781C1001326*: gi|7292419|gb|AAF47823.1|(AE03.444E−023.0332.5450127AI698001Hs. 200664ESTs1.833E−023.0335.5416336R97949Hs. 24128ESTs7.404E−023.0242.5428337AA644508gb: af75C01.r1 Soares_NhHMPu_S1 Homo sapi2.275E−023.0232.25441959BE536998Hs. 200360Homo sapiens cDNA FLJ13027 fis. clone NT3.476E−023.0134.25450770AA019924Hs. 28803ESTs3.476E−023.0152.75414149BE313317Hs. 902neurofibromin 2 (bilateral acoustic neur7.404E−022.9947.25444622H77824ESTs5.681E−032.9851444909AI933051Hs. 192280ESTs5.132E−022.9742.75419662W87674gb: zh66a01.r1 Soares_fetal_liver_spleen7.166E−032.9736439435AI627654Hs. 174497ESTs, Weakly similar to S43529 165 K prot6.091E−022.9736.5435902AA701867Hs. 297726ESTs7.404E−022.9570406526C19001782*: gi|8922411|ref|NP_060558.1|h5.766E−032.9551.5405846Target Exon5.132E−022.9539.75448920AW408009Hs. 22580alkylglycerone phosphate synthase4.164E−022.9243422561AA991499Hs. 118354CAT56 protein5.132E−022.9242.75440915AI809240Hs. 210383olfactory receptor, family 4, subfamily1.485E−022.9231.25449495AI652833gb: wb22c11.x1 NCI_CGAP_GC6 Homo sapiens5.132E−022.9034.75411426BE141714gb: QV0-HT0101-061099-032-c04 HT0101 Homo4.200E−022.9033435236T03890Hs. 157208ESTs, Highly similar to ARX MOUSE HOMEOB7.268E−032.8844.75405152Target Exon7.353E−022.8837.5457230T73510Hs. 209153angiopoietin-like 31.468E−022.8250455485AA102287Hs. 26756hypothetical protein FLJ208965.132E−022.8246.5452266AI767250Hs. 165240ESTs3.476E−022.8149418154BE165866nuclear receptor subfamily 1, group I, m7.404E−022.8065.75405481Target Exon5.132E−022.8046.5404162NM_022113*: Homo sapiens kinesin family m3.476E−022.8040.5415647F13458Hs. 6985ESTs7.353E−022.8040456505AA504595Hs. 111418ESTs1.168E−022.7852.5447567AW474513Hs. 224397ESTs, Weakly similar to I38931 Wiskott-A5.766E−032.7743422473U94780Hs. 117242meningioma expressed antigen 6 (coiled-c7.353E−022.7740.25452830AW976032Hs. 288912hypothetical protein FLJ226043.476E−022.7630428375T65153Hs. 260282ESTs6.091E−022.7632.5444618AV653785Hs. 173334ELL-RELATED RNA POLYMERASE II, ELONGATIO7.268E−032.7330.25432629AW860548Hs. 280658ESTs2.807E−022.7355.25457747AW975000gb: EST387105 MAGE resequences, MAGN Homo9.366E−032.7148449210AI635363Hs. 345517ESTs7.404E−022.7130419711C02621Hs. 159282ESTs2.251E−022.7132407609R43159Hs. 238432ESTs5.132E−022.7047.25438850R33727Hs. 24688EST1.468E−022.7037.75449000U69560Hs. 3826kelch-like protein C3IP13.444E−022.7033.5413359AA524285Hs. 154172ESTs, Moderately similar to BCGF_HUMAN B7.404E−022.6734.75402168NM_022046*: Homo sapiens kallikrein 14 (K5.132E−022.6665423665BE167153Hs. 24380ESTs5.132E−022.6547.75409872AW502313gb: UI-HF-BR0p-ajs-d-08-0-Ul.r1 NIH_MGC_57.404E−022.6545.5419853AA252006Hs. 190150ESTs7.404E−022.6532.25409277T05558Hs. 156880ESTs7.404E−022.6559.75401114Target Exon2.299E−022.6433.25433847AA610266ESTs2.299E−022.6442.25412204AI125507Hs. 130829ESTs5.132E−022.6337454302AA306105Hs. 50785SEC22, vesicle trafficking protein (S. c6.136E−022.6333.5425744AA362985gb: EST72769 Ovary II Homo sapiens cDNA 53.476E−022.6143404265ENSP00000243218*: DJ329L24.3 (member of M1.485E−022.6048.25447113AA741545Hs. 282832ESTs, Weakly similar to T24961 hypotheti3.476E−022.6036.75418383AA218986Hs. 118854ESTs5.132E−022.6031.5448339AL035920Hs. 20938RNA binding motif, single stranded inter3.476E−022.6033.5435321R16814Hs. 112062ESTs1.485E−022.59147.5451898T92572Hs. 142019ESTs, Weakly similar to 1207289A reverse3.476E−022.5932.25436869NM_014867Hs. 5333KIAA0711 gene product1.168E−022.5948.5450016AA249590Hs. 100748ESTs, Weakly similar to A28996 proline-r2.299E−022.5754.25434421AI915927Hs. 34771ESTs7.353E−022.5773.25446783AW138343Hs. 141867ESTs1.485E−022.5658418812AB018256Hs. 283881KIAA0713 protein5.132E−022.5534.5417157N49713gb: yv23f06.s1 Soares fetal liver spleen8.760E−022.5432.75400308AF041410Target2.275E−022.5334.5431082AA491600gb: ne80a11.s1 NCI_CGAP_Ew1 Homo sapiens5.132E−022.5266.75451850R14553Hs. 301663ESTs6.136E−022.5131.75406029Target Exon7.404E−022.5046.25413471BE142098gb: CM4-HT0137-220999-017-d11 HT0137 Homo3.444E−022.5044.5405014AF042838mitogen-activated protein kinase kinase7.353E−022.5035.25432634AI650267Hs. 196169ESTs5.132E−022.5032.75433187R53995Hs. 293381ESTs, Moderately similar to ALU7_HUMAN A5.132E−022.4733.5443832AI829610Hs. 23531ESTs3.476E−022.4737.5447371AA334274Hs. 18368DKFZP564B0769 protein7.404E−022.4644.75458455AV648310Hs. 213488ESTs3.444E−022.4558.5447980AI703397Hs. 202355ESTs8.705E−022.4533419511AA429750Hs. 75113general transcription factor IIIA1.485E−022.4541.25412510AI056689Hs. 133538ESTs, Weakly similar to ALU1_HUMAN ALU S5.681E−032.4546.25416153R13894gb: yf62a06.r1 Soares infant brain 1NIB H1.468E−022.4442.75458492AI143655Hs. 231200ESTs1.168E−022.4347.5425224AA352856Hs. 147211ESTs7.404E−022.4044.75413489BE144228gb: MR0-HT0165-140200-009-d04 HT0165 Homo1.168E−022.4036.75437114AA836641Hs. 163085ESTs1.485E−022.3853.5457558AF083955Hs. 279852G protein-coupled receptor5.132E−022.3745429886AL050145Hs. 225986Homo sapiens mRNA; cDNA DKFZp586C2020 (f1.168E−022.3552.25403171C2001472*: gi|5809678|gb|AAB41848.2|(U643.476E−022.3550.5406126ENSP00000246871: PMS6 PROTEIN (HPMS6 PROT3.476E−022.3547.25428673AW601325Hs. 337757Homo sapiens mRNA; cDNA DKFZp566M063 (fr5.132E−022.3537.75421466U88063Hs. 104633agouti (mouse) related protein7.404E−022.3337.5453285X99894Hs. 32938insulin promoter factor 1, homeodomain t7.404E−022.3236.5441927AW850555Hs. 39925ESTs, Weakly similar to A46010 X-linked7.404E−022.3230.75443368BE568891Hs. 199210ESTs, Moderately similar to bK116F5.2 [H5.681E−032.3242.25430517S80071Hs. 241597solute carrier family 6 (neurotransmitte2.299E−022.3145.5450734AI732317Hs. 299119ESTs, Moderately similar to 2211404A B217.353E−022.3034.5406466Target Exon9.243E−032.3048.75431025AA490842Hs. 105269ESTs2.807E−022.3038.5421573AI302850Hs. 262455ESTs4.200E−022.2944.75429031BE002237Hs. 239666Homo sapiens cDNA FLJ13495 fis, clone PL3.476E−022.2842.25403545Target Exon1.812E−022.2740.5418063R38973Hs. 329841EST2.299E−022.2739412243W37901Hs. 278349ESTs3.444E−022.2731447793AI424924Hs. 211203ESTs3.476E−022.2642.25402370Target Exon1.485E−022.2558.25404150Target Exon7.404E−022.2553.75431668AW969610Hs. 151179ESTs5.132E−022.2537.75442174AI690080Hs. 128907ESTs, Weakly similar to ARIX homeodomain7.404E−022.2444.75444758AL044878Hs. 118993-hydroxy-3-methylglutaryl-Coenzyme A re5.132E−022.2445431395AW752337Hs. 193666haspin1.468E−022.2436447115AI815852Hs. 205865ESTs, Weakly similar to S02392 alpha-2-m3.444E−022.2434.75408847AW290997Hs. 30348ESTs2.275E−022.2246420843H96982Hs. 42321ESTs7.353E−022.2239.25423732AF058056Hs. 132183solute carrier family 16 (monocarboxylic7.404E−022.2151.75447083AI472124Hs. 157757ESTs5.766E−032.2146.5425757AA363171gb: EST72986 Ovary II Homo sapiens cDNA 53.476E−022.2033.25401941Target Exon3.476E−022.1939421193D60983Hs. 5096ESTs, Weakly similar to I38022 hypotheti1.450E−022.1942.25441357AI240184Hs. 126819ESTs7.404E−022.1933.5451068AW294432Hs. 144252ESTs7.404E−022.1832.25427332R09418Hs. 261101ESTs, Weakly similar to I38022 hypotheti8.760E−022.1845.5401929C17001690: gi|6005701|ref|NP_009099.1|AT5.091E−022.1896.5433444AW975324Hs. 129816ESTs3.476E−022.1894.25444331AW193342Hs. 24144ESTs7.353E−022.1843.25445828F05802Hs. 81907ESTs1.485E−022.1764.25452137AI861840Hs. 211687ESTs5.132E−022.1734.75409061AI204994Hs. 7874Homo sapiens cDNA: FLJ21435 fis, clone C2.299E−022.1631457281BE253012Hs. 153400ESTs, Weakly similar to ALU1_HUMAN ALU S7.404E−022.1631.25426129NM_000348Hs. 1989steroid-5-alpha-reductase, alpha polypep3.444E−022.1540.75453894AW937825Hs. 56847Homo sapiens cDNA FLJ12874 fis, clone NT6.136E−022.1454.25403923Target Exon3.444E−022.1349.25428655H05769Hs. 188757Homo sapiens, clone MGC: 5564, mRNA, comp2.299E−022.1332.5454333AW373209gb: RC5-BT0506-271199-031-C12 BT0506 Homo3.444E−022.1244.5445805C16975Hs. 301444KIAA16734.200E−022.1132446709R10490Hs. 156341ESTs5.431E−032.1032.25436505AJ277841Hs. 120963ELG protein7.404E−022.1041.75427761AA412205Hs. 140996ESTs4.929E−022.1031.75417720AA205625Hs. 208067ESTs5.766E−032.1063.5417688R09170Hs. 284350ESTs1.485E−022.1036.25434521NM_002267Hs. 3886karyopherin alpha 3 (importin alpha 4)7.353E−022.0935444900AI360120Hs. 148581ESTs5.132E−022.0634.5444595AL121094Hs. 83572hypothetical protein MGC144333.444E−022.0534406180AB018249small inducible cytokine subfamily A (Cy7.404E−022.0545.25423378BE313601Hs. 164866hypothetical protein FLJ225583.476E−022.0441427227AF103803Hs. 283690hypothetical protein6.136E−022.0336.25438163AI056258Hs. 122523ESTs6.091E−022.0255.75429219AI221480Hs. 99161ESTs5.132E−022.0239.25438011BE466173Hs. 145696splicing factor (CC1.3)1.485E−022.0238.25Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of responders over Trimean of non-responders Ratio R3: Difference of Trimean of responders vs. Trimean of non-responders


[0352]

17







TABLE 6B








Pkey
CAT Number
Accession







409872
1156673_1
AW502313 AW502681 AW502682


409959
1162663_1
BE349470 BE179199 BE179195 BE179198 BE179204 BE162686 AW513804


411047
1230266_1
AW938479 AW850678 AW814826


411214
1235915_1
BE046571 BE046734 BE046555 BE046651 AW827568


411426
1245515_1
BE141714 AW845993 AW845989


413471
1371778_1
BE142098 BE142092


413489
1373392_1
BE144228 BE144291


416153
1573947_1
R13894 H23037 R56371


417157
1653833_1
N49713 N49819 W03810


418154
17249_1
BE165866 BE165832 AA319621 AA401166 AI811901 H78857 X56199 R93797




AW896675 AA401072 AW374411 H52942 AW896685 AA348138




AI399764 AA010244 W90159 N90874 AA339496 AW967136 W38705 AA029093




AW444647 BE175700 AV651656 AV651847 AA332039




AV649227 AV649164 AV649491 N87956 AA332262 BE001561 H75493




BE218742 AA333298 AA095633 AA091968 M78602 T05342 W17094




AA126501 AW374665 AI452905 AW316900 AI185080 AI202928 AI651843 AA693541




AI681019 AV658257 AV658133 BE045335 BE089546




AA300830 AA361376 BE218739 AW207622 AA765340 AW612733 BE348741 AI806054




AI871563 AA808652 AI500693 AW342032 AA147066


419662
1870052_1
W87674 W87872 W87774


423983
233891_1
AA333261 AA333365 AA552870


425744
255834_1
AA362985 AW963337 T27244


425757
255956_1
AA363171 AW963347 AA371863


428337
289967_1
AA644508 AA479489 AA426174


431082
327710_1
AA491600 AA491645 AI920986


431300
331217_1
AA502346 BE159863


432474
348197_1
AA584042 AW973273 AA548798


433171
360292_1
AA579425 AW969965 AA579102


433847
374914_1
AA610266 AA610273 AA632625 AA812563 AI688018 AI094802 H79160 R99139


434995
397210_1
AW974995 AI821880 AI821932 AI791196 AA659617 AI821137 AA658925


437056
432262_1
AI147061 AA743380 AA765223 AW976398 AI803927


442552
54472_3
R20624 AA809852 AW025682 AW292949 H02596 AA633530 AA846566 AA806021




AA713679 AI364631 BE350976 AW076131 AW518885




AW263078 AI417702 AW086132 AI628605 AI769772 H02691 AW591478 H50040 AA227699




AI885558 AA400937 AI261878 R82844 AW075473




AI453800 N56889 AI922512 N51071 N51720 N51823 A1654491 W95290 AI272033 AI695006




AI918702 AI638383 BE552047 AI783684 AI126790




H01465 BE243273


444622
61286_1
H77824 AA370099 AW956039 H73387 R93651 AV650472


447135
70963_1
T58148 AW516579 AW059603


449495
808345_1
AI652833 AI695904 AW888916


449625
8113_1
NM_014253 AF100772 BE088769 AL022718 BE161779 AW863569 BE161640 AL039060




BE168542 AW296554 AA323193 AA235370 AW779760




N48674 AI375997 R45432 D59344 AI203107 F07491 R35360 R25094 AI913631 AI498402 T61382




AI016320 N45526 T61415 AA331486


449986
821463_1
AW864502 AW864369 AI678780


454333
1115507_1
AW373209 AW373205


455358
1284494_1
AW902641 AW902569 AW902654 AW902557 AW902650 AW902644 AW902741


457247
308656_1
AA458605 AW977252 AI261627 AW274550 AI418272 AW665579




AA731376 AW293861 D80453 AI217860


457747
397222_1
AW975000 AA658945 AA661558






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0353]

18








TABLE 6C








Pkey
Ref
Strand
Nt_position







400738
7321559
Plus
150214-150446


400864
9798617
Minus
2555-2673, 27827-28000


401114
9966554
Plus
52327-53385


401197
9719705
Plus
176341-176452


401529
7770649
Minus
14577-15668


401593
7230957
Plus
10368-10572, 11293-12356


401757
7239630
Plus
88641-88751


401778
7249133
Minus
136881-137147, 137499-137628,





137858-138143, 141015-142602


401929
3810670
Minus
3167-3286, 4216-4310


401941
4982556
Plus
112022-112204


402168
7458725
Minus
43245-43397


402370
9558580
Minus
14525-15733


402439
9796503
Minus
108604-108764


402781
7387389
Plus
100409-100666


402836
8745058
Minus
96756-96941


402842
9369121
Minus
76355-76479


402942
9368398
Plus
102152-102386


403171
9838164
Minus
74502-74703


403545
8078400
Plus
25293-25640


403609
8308266
Minus
125974-126320


403686
7387348
Minus
66625-68364


403923
7454203
Minus
1793-2128


404150
7534008
Plus
165811-165943


404162
9926427
Minus
107973-108135


404265
9437317
Minus
50752-50877


404657
9797066
Minus
12444-12548, 17348-17455


405014
6478993
Minus
100709-100845


405152
9965561
Minus
137662-137969


405206
6692345
Plus
17807-18338, 20430-20538


405481
3688109
Plus
5718-5837, 8719-8818


405543
9857582
Minus
104338-104449


405846
7637314
Plus
6623-7188


406029
8312328
Plus
63187-63801


406126
7108191
Minus
46035-46534


406180
7283201
Minus
38923-39107


406299
5686278
Minus
35655-36119


406466
9795550
Plus
115511-115658, 118766-118915,





121699-121771


406526
7711448
Minus
102742-102944


406528
7711464
Minus
11201-11407, 12589-12733,





13287-13499






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham I. et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0354] Table 7A lists about 1298 genes up-regulated in Hepatitis C positive liver tissues compared to Hepatitis C negative liver tissues. These genes have potential to be diagnostics and/or prognostic markers for Hepatitis C infected liver tissues. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of Hepatitis C positive liver tissues to the “weighted average” of Hepatitis C negative liver tissues was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the Hepatitis C positive liver tissues was set to the trimean of several different Hepatitis C positive liver tissues. The “weighted average” of the Hepatitis C negative liver tissues was set to the either 10 or the trimean of several different Hepatitis C negative liver tissues, whichever value was greater to eliminate ratios with a denominator of zero or less.
19TABLE 7APkeyExAccnUniGeneUnigene TitleR1R2428227AA321649Hs. 2248small inducible cytokine subfamily B (Cy1.74E−0725.27414004M737033Hs. 7155ESTs, Moderately similar to 2115357A TYK3.18E−0724.52448111AA053486Hs. 20315interferon-induced protein with tetratri4.93E−0724.00417621AV654694Hs. 82316interferon-induced, hepatitis C-associat2.36E−0723.13422746NM_004484Hs. 119651glypican 34.03E−0622.55426711AA383471Hs. 343800conserved gene amplified in osteosarcoma1.75E−0720.97424090X99699Hs. 139262XIAP associated factor-12.78E−0517.80433854AA610649Hs. 333239ESTs2.26E−0415.90451652AA018968Hs. 133536ESTs1.62E−0415.05427283AL119796Hs. 174185ectonucleotide pyrophosphatase/phosphodi4.02E−0614.90413670AB000115Hs. 75470hypothetical protein, expressed in osteo6.13E−0714.59418216AA662240Hs. 283099AF15q14 protein4.93E−0714.17425787AA363867Hs. 155029ESTs7.26E−0513.57446094AK001760Hs. 13801KIAA1685 protein2.95E−0512.90450937R49131Hs. 26267ATP-dependant interferon response protei4.61E−0612.07442048M974603gb: op34f05.s1 Soares_NFL_T_GBC_S1 Homo s3.34E−0511.92408393AW015318Hs. 23165ESTs1.31E−0511.82415443T07353Hs. 7948ESTs1.67E−0311.80417308H60720Hs. 81892KIAA0101 gene product2.17E−0511.70416206AW206248Hs. 111092hypothetical protein FLJ223322.50E−0611.35432378AI493046Hs. 146133ESTs3.52E−0611.13430200BE613337Hs. 234896geminin7.59E−0711.04445823AI478563Hs. 145519FKSG87 protein1.15E−0511.00447973AB011169Hs. 20141similar to S. cerevisiae SSM44.52E−0510.97409153W03754Hs. 50813hypothetical protein FLJ200225.70E−0710.72451752AB032997KIAA1171 protein1.74E−0710.54414052AW578849Hs. 283552ESTs, Weakly similar to unnamed protein1.77E−0610.45409231AA446644Hs. 692GA733-2 antigen; epithelial glycoprotein1.03E−0410.30432094AI658580Hs. 61426Homo sapiens mesenchymal stem cell prote5.74E−0510.17403790NM_001334*: Homo sapiens cathepsin O (CTS1.08E−039.65421057T58283Homo sapiens cDNA: FLJ22063 fis, clone H4.57E−039.27428065AI634046Hs. 157313ESTs5.43E−039.22444665BE613126Hs. 47783B aggressive lymphoma gene4.58E−069.17435812AA700439Hs. 188490ESTs5.03E−049.13418143M283057Hs. 266957hypothetical protein FLJ142815.30E−049.00435665AI248952Hs. 12320ESTs1.77E−068.85407644D16815nuclear receptor subfamily 1, group D, m4.31E−048.85421282AA286914Hs. 40782ESTs4.54E−048.67422546AB007969Hs. 301478KIAA0500 protein4.00E−058.52409512AW979187Hs. 293591melanoma differentiation associated prot2.36E−078.50429490AI971131Hs. 23889ESTs, Weakly similar to ALU7 HUMAN ALU S1.15E−048.50442994AI026718Hs. 16954ESTs2.43E−038.47416224NM_002902Hs. 79088reticulocalbin 2, EF-hand calcium bindin3.74E−068.45417933X02308Hs. 82962thymidylate synthetase2.02E−038.35405102C15001220*: gi|4469558|gb|AAD21311.1| (AF1.93E−038.20444314AI140497gb: ow76b09.s1 Soares_fetal liver_spleen1.38E−038.10426818AA554827Hs. 292996DKFZp434A0131 protein9.75E−038.02432954AI076345ESTs2.02E−037.88449541AA730673Hs. 188634ESTs7.22E−047.85410315AI638871Hs. 152519Homo sapiens cDNA: FLJ22524 fis. clone H1.30E−057.80433586T85301gb: yd78d06.s1 Soares fetal liver spleen3.20E−037.80436995AI160015Hs. 125489ESTs5.89E−047.80446619AU076643Hs. 313secreted phosphoprotein 1 (osteopontin,4.00E−037.80407949W21874Hs. 247057ESTs, Weakly similar to 2109260A B cell1.03E−047.72421904BE143533Hs. 109309hypothetical protein FLJ200357.61E−077.67424848AI263231Hs. 327090EST2.11E−037.63433401AF039698Hs. 284217serologically defined colon cancer antig1.57E−057.55435571AF212225Hs. 283693mitochondrial ribosomal protein L18.63E−057.55419175AW270037KIAA0779 protein1.01E−057.50407930AA045847Hs. 188361Homo sapiens cDNA FLJ12807 fis, clone NT6.86E−047.47400247Eos Control8.61E−037.38449935AA004798Hs. 108311ESTs, Weakly similar to T00351 hypotheti1.80E−057.38435102AW899053Hs. 76917F-box only protein 83.50E−037.32418452BE379749Hs. 85201C-type (calcium dependent, carbohydrate-4.25E−077.32425053AF046024Hs. 154320ubiquitin-activating enzyme E1C (homolog2.81E−047.30431183NM_006855Hs. 250696KDEL (Lys-Asp-Glu-Leu) endoplasmic retic1.10E−027.30446488AB037782Hs. 15119KIAA1361 protein2.12E−037.25458725AW970192Hs. 171942ras responsive element binding protein 11.71E−047.25449718AA459480Hs. 23956hypothetical protein FLJ205021.80E−057.17418840AI821614Hs. 185831ESTs1.63E−027.10408063BE086548Hs. 42346calcineurin-binding protein calsarcin-11.71E−047.05436024AI800041ESTs2.81E−047.02402727NM_025065: Homo sapiens hypothetical prot1.02E−027.00447574AF162666Hs. 18895tousled-like kinase 11.92E−046.97447809AW207605Hs. 164230ESTs, Highly similar to JC7266 3′,5′-cyc7.31E−066.97421379Y15221Hs. 103982small inducible cytokine subfamily B (Cy4.93E−076.97424878H57111Hs. 221132ESTs2.67E−036.95450016AA249590Hs. 4747ESTs, Weakly similar to A28996 proline-r8.16E−056.90433230AW136134Hs. 220277ESTs1.45E−046.80437967BE277414Hs. 5947mel transforming oncogene (derived from6.72E−036.80419586AI088485Hs. 144759ESTs, Weakly similar to I38022 hypotheti1.54E−066.77422506R20909Hs. 300741sorcin3.86E−026.77433730AK002135Hs. 3542hypothetical protein FLJ112731.08E−036.72445929AI089660Hs. 323401dpy-30-like protein4.78E−046.72405268ENSP00000223174*: KIAA0783 PROTEIN.2.96E−046.70452973H88409Hs. 40527ESTs5.20E−036.70452744AI267652Hs. 246107Homo sapiens mRNA; cDNA DKFZp434E082 (fr5.70E−076.61419407AW410377Hs. 41502hypothetical protein FLJ212764.25E−056.60443547AW271273hypothetical protein FLJ126665.23E−066.57416475T70298gb: yd26g02.s1 Soares fetal liver spleen2.32E−036.55441976AA428403Hs. 106131ESTs2.50E−046.55446493AK001389Hs. 15144hypothetical protein DKFZp564O0434.54E−046.55408096BE250162dihydrofolate reductase1.39E−026.52434375BE277910Hs. 38333′-phosphoadenosine 5′-phosphosulfate sy2.61E−056.52453887BE564037Hs. 36237hypothetical protein1.61E−046.52419550D50918Hs. 90998KIAA0128 protein; septin 21.44E−066.50424941AA128376Hs. 153884ATP binding protein associated with cell2.25E−046.47416133NM_001683Hs. 89512ATPase, Ca transporting, plasma membrane5.20E−036.45442993BE018682Hs. 166196ATPase, Class I, type 8B, member 14.00E−056.40445525BE149866Hs. 14831Homo sapiens, Similar to zinc finger pro1.91E−056.35450293N36754Hs. 171118hypothetical protein FLJ000262.52E−046.34409052AW898179Hs. 50123zinc finger protein 1896.72E−036.33442679R53718hypothetical protein FLJ106598.87E−066.27418476AA648431Hs. 37883hypothetical protein PNAS-1313.67E−046.25426925NM_001196Hs. 315689Homo sapiens cDNA: FLJ22373 fis, clone H9.71E−056.25451788BE242857Hs. 27021hypothetical protein FLJ111597.26E−056.22414183AW957446Hs. 301711ESTs1.45E−036.17425073W39609Hs. 22003solute carrier family 6 (neurotransmitte1.05E−026.17426110NM_002913Hs. 166563replication factor C (activator 1) 1 (143.33E−056.13452548AL050321Hs. 301532CRP2 binding protein3.29E−046.08433745AF075320Hs. 28980hypothetical protein FLJ145403.83E−036.07422173BE385828Hs. 250619phorbolin-like protein MDS0197.58E−076.05451406AI694320Hs. 6295ESTs, Weakly similar to T17248 hypotheti1.25E−036.04443852AI679966Hs. 150603ESTs7.94E−036.02445813Z42023Hs. 106576alanine-glyoxylate aminotransferase 2-li6.52E−046.02413922AI535895Hs. 221024ESTs4.57E−036.00426458D83032Hs. 169984nuclear protein8.28E−036.00443035Z45822Hs. 8906Homo sapiens clone 24889 mRNA sequence1.44E−045.97447164AF026941Hs. 17518vipirin; similar to inflammatory respon8.74E−075.97431604AF175265Hs. 264190vacuolar protein sorting 35 (yeast homol8.84E−045.95445943AW898533Hs. 181574ESTs6.87E−045.95451122AA015767Hs. 84522ESTs7.62E−035.95411252AB018549Hs. 69328MD-2 protein2.60E−055.92423598BE247600Hs. 155538ESTs9.75E−045.92410361BE391804Hs. 62661guanylate binding protein 1, interferon-1.74E−035.88417228AL134324Hs. 7312ESTs4.31E−045.88434421AI915927Hs. 34771ESTs9.75E−045.87424308AW975531Hs. 154443minichromosome maintenance deficient (S.2.17E−055.82427484N32859Hs. 37288nuclear receptor subfamily 1, group D, m2.45E−055.82430261AA305127Hs. 4147hypothetical protein HT0232.42E−035.82443291AA325633Hs. 136102KIAA0853 protein3.06E−035.82447735AA775268Hs. 6127Homo sapiens cDNA: FLJ23020 fis, clone L5.86E−045.82419644AU076951Hs. 179573retinoblastoma-binding protein 16.08E−055.80456619AV647917Hs. 107153inhibitor of growth family, member 1-lik7.31E−065.80414812X72755Hs. 77367monokine induced by gamma interferon1.34E−065.78430556AW967807Hs. 13797ESTs1.83E−035.77408360AI806090Hs. 44344hypothetical protein FLJ205344.24E−055.75418224AL036057Hs. 83795interferon regulatory factor 22.38E−045.75418876AA740616gb: ny97f11.s1 NCI_CGAP_GCB1 Homo sapiens5.09E−055.75456236AF045229Hs. 82280regulator of G-protein signalling 101.52E−035.72437374AL359571Hs. 44054ninein (GSK3B interacting protein)6.85E−055.71445529H14421Hs. 180513ATP-binding cassette, sub-family A (ABC19.77E−045.70400517lengsin2.45E−055.67410577X91911Hs. 64639glioma pathogenesis-related protein1.76E−065.67434210AA665612ESTs3.27E−065.67438011BE466173Hs. 145696splicing factor (CC1.3)7.94E−035.67421594R45689Hs. 21889Homo sapiens cDNA FLJ12978 fis, clone NT3.50E−035.65400133Eos Control1.29E−025.63452827AI571835Hs. 55468ESTs2.61E−055.63448694AA478756Hs. 194477E3 ubiquitin ligase SMURF22.26E−045.62408214AL120445Hs. 77823hypothetical protein FLJ213432.66E−045.60449609BE246434Hs. 289026guanine nucleotide binding protein (G pr6.17E−045.59409277T05558Hs. 156880ESTs6.17E−035.57421650AA781795Hs. 122587ESTs1.22E−055.57428172U09367Hs. 182828zinc finger protein 136 (clone pHZ-20)2.32E−035.57433037NM_014158Hs. 279938HSPC067 protein3.77E−055.57413509BE145419gb: IL5-HT0198-291099-009-E01 HT0198 Homo1.75E−035.52457130NM_005651Hs. 183671tryptophan 2,3-dioxygenase5.91E−035.52433208AW002834Hs. 24095ESTs5.39E−025.51410867X63556Hs. 750fibrillin 1 (Marfan syndrome)1.96E−025.50412802U41518Hs. 74602aquaporin 1 (channel-forming integral pr5.89E−045.50416309R84694Hs. 79194cAMP responsive element binding protein6.82E−055.50437730AW071087Hs. 239176insulin-like growth factor 1 receptor2.54E−035.50420520AK001978Hs. 98510similar to rab11-binding protein6.16E−035.47422423AF283777Hs. 116481CD72 antigen5.67E−035.47431586AW971100Hs. 293189ESTs2.79E−035.47415660AI909007Hs. 78563ubiquitin-conjugating enzyme E2G 1 (homo1.96E−025.45424243AI949359Hs. 143600ESTs, Highly similar to cis Golgi-locali9.29E−045.45439008AF075072Hs. 167535ESTs, Weakly similar to ALU1_HUMAN ALU S2.66E−035.45443441AW291196Hs. 92195ESTs4.42E−025.45413010AA393273Hs. 75133transcription factor 6-like 1 (mitochond4.77E−035.42439375AA689526Hs. 344249steroid dehydrogenase homolog9.70E−055.42405141zinc finger protein 2001.69E−025.40429747M87507Hs. 2490caspase 1, apoptosis-related cysteine pr1.39E−055.40448901AK001021Hs. 22505hypothetical protein FLJ101596.40E−065.40450206AI796450Hs. 201600ESTs2.52E−045.38437175AW968078Hs. 87773protein kinase, cAMP-dependent, catalyti2.96E−045.37429588AI080271ESTs2.55E−035.36408048NM_007203Hs. 42322A kinase (PRKA) anchor protein 21.01E−025.35422553AI697720Hs. 171455ESTs, Weakly similar to T31613 hypotheti2.31E−055.35448554NM_016169Hs. 21431suppressor of fused2.80E−045.33420338AA825595Hs. 88269Homo sapiens, clone MGC: 17339, mRNA, com4.92E−065.32425167AA351629Hs. 225567ESTs2.22E−035.31449429AA054224Hs. 59847ESTs1.10E−025.30436562H71937Hs. 322904ESTs, Weakly similar to I38022 hypotheti4.77E−035.29407347AA829847gb: od40d07.s1 NCI_CGAP_GCB1 Homo sapiens5.08E−055.29433505AW504027Hs. 15301Homo sapiens cDNA FLJ12596 fis, clone NT1.13E−035.27439301AA833784Hs. 252888ESTs1.57E−025.27439195H89360gb: yw28d08.s1 Morton Fetal Cochlea Homo3.20E−035.27414737AI160386Hs. 125087ESTs6.37E−065.25419490NM_006144Hs. 90708granzyme A (granzyme 1, cytotoxic T-lymp1.29E−025.25439971W32474Hs. 301746RAP2A, member of RAS oncogene family1.39E−055.25450697AW152166Hs. 182113ESTs5.43E−035.25432441AW292425Hs. 163484ESTs2.52E−045.22410511AA743475Hs. 285655ESTs4.00E−035.20421535AB002359Hs. 105478phosphoribosylformylglycinamidine syntha1.59E−035.20427699AW965076Hs. 180378hypothetical protein 6691.14E−025.20437650AA814338Hs. 292297ESTs7.30E−035.20408405AK001332Hs. 44672hypothetical protein FLJ104701.77E−065.18413007BE046662gb: hn42f02.x1 NCI_CGAP_RDF2 Homo sapiens8.00E−045.17449365AW968261Hs. 118913ESTs, Moderately similar to T46371 hypot1.10E−025.17452327AK000196Hs. 29052hypothetical protein FLJ201895.73E−055.17416701R94977Hs. 35416PRO0132 protein5.20E−035.15447774BE018118Hs. 19554chromosome 1 open reading frame 21.10E−025.14437834AA769294gb: nz36g03.s1 NCI CGAP_GCB1 Homo sapiens2.64E−045.13458965AA010319Hs. 60389ESTs1.38E−035.13421097AI280112Hs. 125232Homo sapiens cDNA FLJ13266 fis, clone OV3.26E−025.10410337M83822Hs. 62354cell division cycle 4-like4.31E−045.10422267AB033044Hs. 114012KIAA1218 protein4.28E−045.10442878AI868648Hs. 22315ESTs1.92E−035.10451338AW612322Hs. 19131transcription factor Dp-2 (E2F dimerizat2.66E−045.10407204R41933Hs. 140237ESTs, Weakly similar to ALU1_HUMAN ALU S2.52E−045.07431049AA846576Hs. 103267hypothetical protein FLJ22548 similar to8.59E−055.07419522AI682428Hs. 157728ESTs2.13E−045.05431736AI912234Hs. 3297ribosomal protein S27a9.76E−045.02433697AA600357Hs. 239489TIA1 cytotoxic granute-associated RNA-bi1.34E−025.02403738C4000675*: gi|3426332|gb|AAC32272.1| (AF07.30E−065.02453742AB037744Hs. 34892KIAA1323 protein3.35E−035.02426052N49068Hs. 93966ESTs2.96E−045.00430268AK000737Hs. 237480hypothetical protein FLJ207304.56E−035.00430512AF182294Hs. 241578U6 snRNA-associated Sm-like protein LSm81.39E−025.00434658AI624436Hs. 310286ESTs1.22E−045.00450086AW016343Hs. 233301ESTs4.98E−035.00432606NM_002104Hs. 3066granzyme K (serine protease, granzyme 3;8.15E−054.99450916AA011597Hs. 177398ESTs4.98E−034.98444372AW377983Hs. 298140Homo sapiens cDNA: FLJ22502 fis, clone H8.13E−054.98439334AI148976Hs. 112062ESTs9.71E−044.98440043BE277457Hs. 30661hypothetical protein MGC46061.52E−034.97424852AI222779Hs. 144848ESTs1.06E−024.95443884N20617Hs. 194397leptin receptor2.54E−024.95444670H58373Hs332938hypothetical protein MGC53702.96E−044.95409703NM_006187Hs. 560092′-5′-oligoadenylate synthetase 3 (100 k1.74E−074.94426793X89887Hs. 172350HIR (histone cell cycle regulation defec4.18E−034.93407366AF026942Hs. 17518gb: Homo sapiens cig33 mRNA, partial sequ3.76E−064.92428255AI627478Hs. 187670ESTs3.51E−034.91415938BE383507Hs. 78921A kinase (PRKA) anchor protein 16.44E−054.91403904ENSP00000251503*: WUGSC7.31E−034.90408831AF090114Hs. 48433endocrine regulator1.81E−044.90414646AA353776Hs. 901CD48 antigen (B-cell membrane protein)7.82E−064.90420151AA255931Hs. 186704ESTs8.60E−054.90434158T86534Hs. 14372ESTs2.43E−034.90450447AF212223Hs. 25010hypothetical protein P15-23.99E−034.90447769AW873704Hs. 320831Homo sapiens cDNA FLJ14597 fis, clone NT4.79E−044.89416050U51903Hs. 78993IQ motif containing GTPase activating pr3.14E−024.88421215AI868634Hs. 246358ESTs, Weakly similar to T32250 hypotheti3.99E−054.87408761AA057264Hs. 238936ESTs, Weakly similar to (defline not ava3.48E−044.86449523NM_000579Hs. 54443chemokine (C-C motif) receptor 52.78E−054.85423857N48902Hs. 133481Homo sapiens mRNA; cDNA DKFZp564O0862 (f1.66E−034.82427384T82854gb: yd42a09.r1 Soares fetal liver spleen1.14E−024.82451273NM_014811Hs. 26163KIAA0649 gene product4.35E−034.82431620AA126109Hs. 2649812′-5′-oligoadenylate synthetase 2 (69-711.75E−074.82439223AW238299Hs. 250618UL16 binding protein 25.03E−044.82451081AI078645Hs. 431murine leukemia viral (bmi-1) oncogene h7.30E−034.79407609R43159Hs. 238432ESTs1.92E−034.77424683N87519Hs. 27196ESTs2.52E−044.77429966BE081342Hs. 283037HSPC039 protein6.93E−024.77443998AI620661Hs. 296276ESTs8.63E−034.77452820N46161Hs. 35274ESTs5.43E−034.77454075R43826Hs. 16313Kruppel-like zinc finger protein GLIS27.30E−034.77429922Z97630Hs. 226117H1 histone family, member 03.25E−024.77422541NM_005131Hs. 1540nuclear matrix protein p842.66E−034.76449613N63808Hs. 34299ESTs5.99E−064.75407309AA526438Hs. 281680peroxisomal trans 2-enoyl CoA reductase;7.68E−054.74431966AB037903Hs. 272257Homo sapiens truncated AKR mRNA for trun7.62E−034.73410382AW664971Hs. 259546ESTs7.68E−054.72434926BE543269Hs. 50252mitochondrial ribosomal protein L323.29E−044.72414219W20010Hs. 75823ALL1-fused gene from chromosome 1q8.62E−034.71413048M93221Hs. 75182mannose receptor, C type 11.91E−044.67419110AA234171Hs. 187626ESTs1.71E−044.67429952AF080158Hs. 226573inhibitor of kappa light polypeptide gen2.52E−044.67450401AW959281Hs. 8184ESTs1.19E−034.67432600AI821085gb: ns95a12.y5 NCI_CGAP_Pr3 Homo sapiens2.55E−034.65441892AB028981Hs. 8021KIAA1058 protein1.29E−044.65446207AW968535Hs. 14328hypothetical protein FLJ200719.27E−044.65450516AA902656Hs. 21943NIF3 (Ngg1 interacting factor 3. S. pombe7.19E−044.65419590AF005043Hs. 91390poly (ADP-ribose) glycohydrolase6.44E−054.65449909AA004681Hs. 59432ESTs4.77E−034.63409401AI201895Hs. 181309proteasome (prosome, macropain) subunit.2.12E−034.63441652BE467811Hs. 7471BBP-like protein 11.75E−034.61417688R09170Hs. 284350ESTs4.78E−044.61411605AW006831ESTs8.26E−034.60408108AI580492Hs. 42743hypothetical protein1.38E−034.60451079AI827988Hs. 240728ESTs, Moderately similar to PC4259 ferri8.00E−044.60451326AW296946Hs. 256078ESTs5.57E−044.60453555N23574Hs. 123649ESTs, Moderately similar to ALU7_HUMAN A6.81E−054.60447541AK000288Hs. 18800hypothetical protein FLJ202812.19E−024.60402737Target Exon3.66E−044.60454067AA041455ESTs8.00E−044.59408705AA312135Hs. 46967HSPCO34 protein3.06E−064.57413786AW613780Hs. 13500ESTs5.69E−074.57424626AA344308Hs. 128427Homo sapiens BAC clone RP11-335J18 from2.45E−054.57447023AA356764Hs. 17109integral membrane protein 2A1.92E−044.57449500AW956345Hs. 12926ESTs5.56E−024.56432572AI660840Hs. 191202ESTs, Weakly similar to ALUE_HUMAN !!!!1.06E−024.55446927AW503484Hs. 16533myosin phosphatase, target subunit 12.78E−034.55452695AW780199Hs. 30327mitogen-activated protein kinase-activat2.32E−034.55456034AW450979gb: UI-H-BI3-ala-a-12-0-UI.s1 NCI_CGAP_Su3.26E−024.55401091decay accelerating factor for complement7.98E−044.52423250BE061916Hs 125849chromosome 8 open reading frame 21.89E−024.52451690AW451469Hs. 209990ESTs1.06E−024.52443119AA312264Hs. 7980hypothetical protein MGC129661.91E−044.50410245C17908Hs. 194125ESTs1.69E−024.49448760AA313825Hs. 323583AD036 protein8.13E−054.48417954AI633943Hs. 26613ESTs, Weakly similar to no similarities5.56E−024.47417973NM_004490Hs. 83070growth factor receptor-bound protein 142.73E−024.47419743AW408762Hs. 5957Homo sapiens clone 24416 mRNA sequence4.88E−024.47429276AF056085Hs. 198612G protein-coupled receptor 512.80E−044.47432967AA572949Hs. 207566ESTs7.59E−034.47433226AW503733Hs. 9414KIAA1488 protein2.67E−034.47445776NM_001310Hs. 13313cAMP responsive element binding protein-2.83E−024.47426860U04953Hs. 172801isoleucine-tRNA synthetase1.34E−024.47419943AA252111Hs. 15200ESTs4.54E−044.47442202BE272862Hs. 106534hypothetical protein FLJ226254.30E−044.47432676AI187366gb: qf29c01.x1 Soares_testis_NHT Homo sap1.45E−044.46421181NM_005574Hs. 184585LIM domain only 2 (rhombotin-like 1)5.91E−034.45428342AI739168Homo sapiens cDNA FLJ13458 fis, clone PL8.15E−054.45434941AW073202Hs. 334825Homo sapiens cDNA FLJ14752 fis, clone NT7.95E−034.45446839BE091926Hs. 16244mitotic spindle coiled-coil related prot4.56E−034.45421508NM_004833Hs. 105115absent in melanoma 21.53E−044.43438098AI076370Hs. 134037ESTs1.19E−024.42449001AI619957ESTs6.17E−034.42409461AA382169Hs. 54483N-myc (and STAT) interactor4.91E−074.42408461AB037756Hs. 45207hypothetical protein KIAA13358.26E−034.40413243AA769266Hs. 193657ESTs1.06E−024.40450747AI064821Hs. 318535ESTs, Highly similar to 1818357A EWS gen5.92E−024.40451658AW195351Hs. 250520ESTs, Moderately similar to I38022 hypot1.22E−044.38419951AI653415Hs. 195789ESTs8.63E−054.38421685AF189723Hs. 106778ATPase, Ca transporting, type 2C, member8.00E−044.38424960BE245380Hs. 1539525′ nucleotidase (CD73)1.06E−024.38432435BE218886Hs. 282070ESTs1.19E−034.38431863AA188185Hs. 289043spindlin3.55E−054.37408162AA993833Hs. 118527ESTs6.41E−034.35417363AW129357Hs. 329700ESTs9.37E−034.35422879AI241409Hs. 188092ESTs1.59E−034.35438769AA830684Hs. 163426ESTs2.79E−034.35443084AI827639Hs. 125539ESTs2.66E−034.35425068AL048716Hs. 154387KIAA0103 gene product8.08E−024.35445652AL117473Hs. 13036DKFZP727A071 protein8.40E−044.33431328AA502999Hs. 291591ESTs2.03E−044.30434666AF151103Hs. 112259T cell receptor gamma locus7.99E−044.30452939R35348Hs. 24970ESTs, Weakly similar to B34323 GTP-bindi6.17E−034.30407690R47799Hs. 266957hypothetical protein FLJ142813.28E−064.27432610BE246615Hs. 278507histidyl-tRNA synthetase-like3.35E−034.27434198AF119849Hs. 283028hypothetical protein PRO15982.38E−044.27446751AA766998Hs. 79126Human DNA sequence from clone RP11-16L214.58E−024.27447887AA114050Hs. 19949caspase 8, apoptosis-related cysteine pr7.96E−044.27411656AW855576gb: CM4-CT0278-221099-027-d01 CT0278 Homo3.20E−034.25428720T90468Hs. 178154ESTs1.25E−034.25432195AJ243669Hs. 8127KIAA0144 gene product6.52E−044.25433847AA610266Hs. 3631ESTs4.54E−044.25434987AW975114ESTs7.62E−034.25443020AI350058Hs. 106129ESTs1.39E−024.24440193AW902312Hs. 7037Homo sapiens clone 24923 mRNA sequence8.57E−024.22440201AL359588Hs. 7041hypothetical protein DKFZp762B2261.05E−024.22447513AW955776Hs. 313500ESTs, Moderately similar to ALU7_HUMAN A2.03E−064.22453793AK002178Hs. 35225hypothetical protein FLJ113166.72E−034.22434280BE005398gb: CM1-BN0116-150400-189-h02 BN0116 Homo1.59E−034.22414405AI362533KIAA0306 protein6.39E−064.21433437U20536Hs. 3280caspase 6, apoptosis-related cysteine pr7.81E−064.20402507Target Exon5.30E−044.20430569AF241254Hs. 178098angiotensin | converting enzyme (peptidy2.45E−024.20442061AA774284Hs. 285728abl-interactor 12 (SH3-containing protei7.58E−044.20414915NM_002462Hs. 76391myxovirus (influenza) resistance 1, homo2.36E−074.19442045C05768Hs. 8078Homo sapiens clone FBD3 Cri-du-chat crit1.31E−034.18402964NM_022095*: Homo sapiens hypothetical C2H5.59E−044.17452032BE244005Hs. 27610retinoic acid-and interferon-inducible4.54E−044.17407218AA095473ubiquitin-conjugating enzyme E2H (homolo7.93E−034.17425387AB037864Hs. 156051KIAA1443 protein3.65E−044.17431122AI267593Hs. 250535Homo sapiens mRNA; cDNA DKFZp434N2412 (f6.51E−044.17407756AA116021Hs. 38260ubiquitin specific protease 183.41E−074.17407992AW418811gb: ha21a06.x1 NCI-HD —3.64E−034.16CGAP_Kid12 Homo sapien416647BE297139Hs. 79411replication protein A2 (32 kD)7.98E−044.16433017Y15067Hs. 279914zinc finger protein 2323.31E−054.15435513AW404075Hs. 42785DC11 protein2.63E−024.15447094X65232Hs. 17364zinc finger protein 79 (pT7)1.19E−034.15450746D82673Hs. 278589general transcription factor II, i5.23E−064.15432388X15218Hs. 2969v-ski avian sarcoma viral oncogene homol8.84E−044.15431976AA719001Hs. 291065ESTs6.86E−054.14453394AW960474Hs. 40289ESTs103E−044.13418793AW382987Hs. 88474prostaglandin-endoperoxide synthase 1 (p1.39E−024.13456439AA251242Hs. 103238ESTs7.94E−034.13406423C19000229*: gi|6753826|ref|NP_034311.1| f2.04E−024.13408392U28831Hs. 44566KIAA1641 protein5.67E−034.13417601NM_014735Hs. 82292KIAA0215 gene product3.13E−044.13425462AI491852Hs. 46783Homo sapiens cDNA: FLJ22382 fis, clone H3.74E−024.12440624AF017987Hs. 7306secreted frizzled-related protein 11.10E−024.11422040AA172106Hs. 110950Rag C protein6.53E−044.10416987D86957Hs. 80712KIAA0202 protein4.37E−034.10418720AI381687Hs. 39526ESTs5.39E−024.10433556W56321Hs. 111460calcium/calmodulin-dependent protein kin1.15E−044.10435260H64245Hs. 34458ESTs3.35E−034.09443601AI078554Hs. 42658ESTs1.45E−044.09435029AF167706Hs. 19280cysteine-rich motor neuron 11.45E−024.08446667BE161878Hs224805ESTs2.04E−024.06406038zinc finger protein 2002.92E−034.05430468NM_004673Hs. 241519angiopoietin-like 11.69E−024.05430522N75750Hs. 242271KIAA0471 gene product4.00E−034.05423732AF058056Hs. 132183solute carrier family 16 (monocarboxylic2.02E−034.05408548AA055449Hs. 63187ESTs, Weakly similar to ALUC_HUMAN !!!!3.66E−034.02451593AF151879Hs. 26706CGI-121 protein1.71E−044.02459297BE300741Hs. 125034hypothetical protein FLJ133402.92E−034.02433001AF217513Hs. 279905clone HQ0310 PRO0310p13.13E−044.02433233AB040927Hs. 301804KIAA1494 protein8.27E−034.00445733BE295568Hs. 13225UDP-Gal: betaGlcNAc beta 1,4-galactosylt3.06E−034.00444985AI677737Hs. 28329hypothetical protein FLJ140058.82E−043.98408380AF123050Hs. 44532diubiquitin1.54E−063.98416999AW195747Hs. 21122hypothetical protein FLJ11830 similar to5.89E−043.97424238AA337401Hs. 137635ESTs2.93E−023.97425395NM_014102Hs. 156243PRO1848 protein9.70E−053.97442485BE092285Hs. 29724hypothetical protein FLJ131871.02E−023.97401649Target Exon9.28E−043.95426108AA622037Hs. 166468programmed cell death 59.92E−023.95441889AI090455Hs. 268371hypothetical protein FLJ202743.74E−023.95428467AK002121Hs. 184465hypothetical protein FLJ112591.13E−033.95452194AI694413Ubiquitin-like protein FAT10??? - diubiq2.18E−063.93421443BE550141Hs. 156148hypothetical protein FLJ132317.59E−043.92427213AW007211hypothetical protein FLJ128765.21E−033.92449964AW001741Hs. 24243hypothetical protein FLJ107062.01E−033.92435970H75410Hs. 54452zinc finger protein, subfamily 1 A, 1 (lk1.44E−033.92448965AF092134Hs. 22679CGI-24 protein5.74E−053.90419737H24185Hs. 92918hypothetical protein1.75E−033.90425210AA054679Hs. 155150ribonuclease P (14 kD)7.30E−033.90437862AW978107Hs. 5884Homo sapiens mRNA; cDNA DKFZp586C0224 (f5.67E−033.90400475NM_031436*: Homo sapiens hypothetical pro2.91E−033.88433075NM_002959sortilin 15.75E−023.88428420AL096858Hs. 184245KIAA0929 protein Msx2 interacting nuclea5.26E−063.86436139AA765786Hs. 120936ESTs8.16E−053.86449509AA001615Hs. 84561ESTs4.13E−023.85452642AW474296Hs. 29667ESTs1.24E−023.85456107AA160000Hs. 137396ESTs, Weakly similar to JC5238 galactosy6.15E−033.85457584AA147979Hs. 285005mitochondrial import receptor Tom223.13E−043.84414658X58528Hs. 76781ATP-binding cassette, sub-family D (ALD)4.18E−033.84452866R26969Hs. 268016Homo sapiens cDNA: FLJ21243 fis, clone C1.38E−033.84412651AA115333Hs. 107968ESTs4.02E−063.84403575Target Exon1.44E−033.82418304AA215702gb: zr97g10.r1 NCI_CGAP_GCB1 Homo sapiens1.59E−033.82435354AA678267Hs. 117115ESTs4.42E−023.82411400AA311919Hs. 69851nucleolar protein family A, member 1 (H/3.12E−043.82408618AK000637Hs. 46624HSPC043 protein1.63E−023.81419135R61448Hs. 106728ESTs, Weakly similar to KIAA1353 protein2.16E−053.80421965AA301100Hs. 346482gb: EST14128 Testis tumor Homo sapiens cD3.33E−053.79419908AW971327Hs. 293315ESTs1.13E−033.79438021AV653790WW domain-containing protein 19.79E−043.78423450AJ290445Hs. 128759KIAA0524 protein2.81E−043.77432689AB018320Arg/Abl-interacting protein ArgBP21.51E−023.77434526AW085147Hs. 152779ESTs8.24E−033.77436385BE551618Hs. 144097ESTs5.39E−023.77424003BE274717Hs. 137506Homo sapiens, clone IMAGE: 3605104, mRNA,1.69E−023.75432409AA806538Hs. 130732KIAA1575 protein5.93E−023.75432873AW837268Hs. 279639Homo sapiens mRNA; cDNA DKFZp586M2022 (f1.14E−023.74401016ENSP00000227126: NAALADASE II PROTEIN.2.92E−033.72425397J04088Hs. 156346topoisomerase (DNA) II alpha (170 kD)3.37E−023.72426310NM_000909Hs. 169266neuropeptide Y receptor Y16.17E−033.72430016NM_004736Hs. 227656xenotropic and polytropic retrovirus rec2.93E−023.72434733AI334367Hs. 159337ESTs4.78E−043.72447892AI435848Hs. 172978ESTs2.63E−023.72453753BE252983Hs. 35086ubiquitin specific protease 14.56E−023.72410099AA081630KIAA0036 gene product7.84E−023.72421205AL137540Hs. 102541netrin 46.12E−023.71437629AW574774Hs. 121692ESTs7.98E−043.71446506AI123118Hs. 15159chemokine-like factor, alternatively spl1.16E−063.71405689NM_018850*: Homo sapiens ATP-binding cass8.40E−043.71427399NM_014883Hs. 177664KIAA0914 gene product4.54E−043.70417848AA206581Hs. 116586ESTs, Weakly similar to JC5314 CDC28/cdc1.75E−033.70419511AA429750Hs. 75113general transcription factor IIIA5.20E−033.70425423NM_005897Hs. 157180intracisternal A particle-promoted polyp1.44E−033.70433891AA613792gb: no97h03.s1 NCI_CGAP_Pr2 Homo sapiens2.19E−023.70434924AA443164Hs. 23259hypothetical protein FLJ134334.01E−053.70442085AA975688Hs. 159955ESTs4.00E−033.70444363AI142827Hs. 143656ESTs4.29E−043.70423954AW753164Hs. 288604KIAA1632 protein2.11E−033.69423494AW504365Hs. 24143Wiskott-Aldrich syndrome protein interac2.54E−033.67429680AL035754Hs. 2474toll-like receptor 11.62E−043.67429686AI871613Hs. 28538Homo sapiens cDNA: FLJ21086 fis, clone C1.75E−023.67440865AI281525Hs. 130180ESTs2.43E−033.67444508AI554691Hs. 334583ring finger protein 231.02E−033.67427581NM_014788Hs. 179703KIAA0129 gene product4.92E−073.67438459T49300Hs. 35304Homo sapiens cDNA FLJ13655 fis, clone PL2.38E−043.67442160AI337127Hs. 156325ESTs4.00E−063.67448071BE621584Hs. 6983Homo sapiens cDNA: FLJ22646 fis, clone H1.62E−043.65425757AA363171gb: EST72986 Ovary II Homo sapiens cDNA 51.13E−033.65431560BE244135Hs. 260238hypothetical protein FLJ108425.19E−033.65444969AI203334Hs. 160628ESTs7.93E−033.65443562AF118838Hs. 9599solute carrier family 25, member 13 (cit2.04E−023.64435511AA683336Hs. 189046ESTs1.89E−023.64436503AJ277750Hs. 183924ubiquitin associated and SH3 domain cont5.67E−033.63417148AA359896Hs. 293885hypothetical protein FLJ149026.31E−023.63421114AW975051Hs. 293156ESTs, Weakly similar to 178885 serine/th2.73E−023.63443373AI792868Hs. 135365ESTs1.06E−023.63449720AA311152Hs. 288708hypothetical protein FLJ215623.99E−053.63451938AI354355Hs. 16697down-regulator of transcription 1, TBP-b1.38E−033.63457231AI472022Hs. 301959proline synthetase co-transcribed (bacte1.02E−023.63425332AA633306Hs. 127279ESTs9.28E−043.61436860H12751Hs. 5327PRO1914 protein4.08E−043.60400281Eos Control2.96E−053.60407946AA226495Hs. 154292ESTs5.83E−043.60418699BE539639Hs. 173030ESTs, Weakly similar to ALU8_HUMAN ALU S1.10E−023.60422303AW410382Hs. 27556hypothetical protein FLJ224056.32E−023.60425345AU077297Hs. 155894protein tyrosine phosphatase, non-recept6.44E−033.60425692D90041Hs. 155956N-acetyltransferase 1 (arylamine N-acety7.67E−053.60428250AW809208Hs. 183297DKFZP566F2124 protein1.13E−033.60443968AA287702Hs. 10031KIAA0955 protein1.51E−023.60447433AA651869Hs. 5320hypothetical protein1.44E−023.60456760AW961251Hs. 127828guanine nucleotide binding protein (G pr1.31E−033.60430293AI416988Hs. 238272inositol 1,4,5-triphosphate receptor, ty2.14E−043.59427051BE178110Hs. 173374Homo sapiens cDNA FLJ10500 fis, clone NT3.49E−023.58408438AB011180Hs. 100960KIAA0608 protein6.17E−033.57413645AA130992gb: zo15e02.s1 Stratagene colon (937204)1.63E−023.57424881AL119690Hs. 153618HCGVIII-1 protein6.17E−033.57427471AA403131Hs. 266782KIAA1826 protein4.37E−033.57430024AI808780Hs. 227730integrin, alpha 62.02E−043.57447941AW181928Hs. 249946ESTs9.64E−023.57418822Z43371Hs. 7012ESTs1.19E−033.56409342AU077058Hs. 54089BRCA1 associated RING domain 16.72E−033.55410054AL120050Hs. 58220Homo sapiens cDNA: FLJ23005 fis, clone L8.27E−033.55419440AB020689Hs. 90419KIAA0882 protein7.61E−043.55423886AA332098gb: EST36256 Embryo, 8 week I Homo sapien2.21E−033.55437133AB018319Hs. 5460KIAA0776 protein4.14E−023.55445718H79791Hs. 15227ESTs2.78E−053.55408731R85652Homo sapiens mRNA; cDNA DKFZp434F1928 (f1.29E−043.55409038T97490Hs. 50002small inducible cytokine subfamily A (Cy7.24E−043.53403809NM_024743*: Homo sapiens hypothetical pro3.37E−023.52417301AI478158Hs. 164478hypothetical protein FLJ21939 similar to2.55E−033.52421684BE281591Hs. 106768hypothetical protein FLJ105114.14E−023.52432834F06459Hs. 289113cytochrome b5 reductase 1 (B5R.1)1.69E−023.52439763AA845366Hs. 184075ESTs, Weakly similar to ALU1_HUMAN ALU S4.36E−033.52445240AI217385Hs. 147574ESTs2.45E−023.52444545AW995346Hs. 146910ESTs2.63E−023.52420789AI670057Hs. 199882ESTs4.73E−023.52421662NM_014141Hs. 106552cell recognition molecule Caspr26.19E−043.51426181AA371422Hs. 334371hypothetical protein MGC130961.59E−033.51421951BE327432Hs. 109804H1 histone family, member X1.83E−033.50426780BE242284Hs. 172199adenylate cyclase 71.67E−033.50429301AA449416Hs. 31395ESTs4.76E−033.50430750AI650360Hs. 100256ESTs5.89E−033.50443126AI033503gb: ox06d11.s1 Soares_fetal_liver_spleen1.39E−023.50450253AL133047Hs. 24715Homo sapiens mRNA; cDNA DKFZp434D0215 (f2.79E−033.50442739NM_007274Hs. 8679cytosolic acyl coenzyme A thioester hydr1.31E−033.49430478NM_014349Hs. 241535apolipoprotein L, 31.74E−073.49408784AW971350Hs. 63386ESTs1.90E−053.47417562AW888754Hs. 134126crystallin, gamma S2.92E−033.47437664AW977714Hs. 211610ESTs, Moderately similar to ALU1_HUMAN A3.35E−033.47448219AA228092KIAA1681 protein1.29E−023.47403671C4001270*: gi|7509005|pir||T26190 hypothe8.28E−033.47427008Z45258Hs. 286013short coiled-coil protein1.37E−043.46409005AW299806Hs. 297256ESTs2.67E−033.46446162AI631319Hs. 63841hypothetical protein DKFZp434E23181.19E−023.45453686AL110326Hs. 304679ESTs, Moderately similar to Z195_HUMAN Z3.66E−043.45441297AW403084Hs. 7766ubiquitin-conjugating enzyme E2E 1 (homo8.85E−043.44430457AI436216Hs. 191715ESTs, Weakly similar to ZN91_HUMAN ZINC3.66E−033.43413392AW021404Hs. 13021ESTs1.29E−023.42416980AA381133Hs. 80684high-mobility group (nonhistone chromoso1.45E−023.42417244T57053Hs. 10136ESTs4.18E−033.42422343AI628633Hs. 346823gb: ty77d05.x1 NCI_CGAP_Kid11 Homo sapien1.06E−023.42426494AL119528Hs. 170098KIAA0372 gene product1.44E−023.42427722AK000123Hs. 180479hypothetical protein FLJ201164.28E−023.42441466AW673081Hs. 54828ESTs1.14E−023.42450850AA648886Hs. 151999ESTs9.18E−053.42418259AA215404ESTs3.54E−053.40423032AI684746Hs. 119274RAS p21 protein activator (GTPase activa1.25E−033.40452167N75238Hs. 13075Homo sapiens cDNA: FLJ23013 fis, clone L4.18E−033.40415023AA932146Homo sapiens clone TCCCIA00164 mRNA sequ6.18E−043.40424088AL049942Hs. 139240DKFZP564F1422 protein8.79E−043.40419438AA406400Hs. 12482glyceronephosphate O-acyltransferase7.62E−033.39441077AI241273Hs. 15312ESTs3.07E−063.38420664AI681270Hs. 99824BCE-1 protein4.09E−043.38426979AF161472Hs. 173074DKFZP564O1863 protein7.37E−023.38437410AW023340Hs. 14880ESTs4.36E−033.38444430AI611153Hs. 6093Homo sapiens cDNA: FLJ22783 fis, clone K4.89E−023.38417678X06560Hs. 823962′,5′-oligoadenylate synthetase 1 (40-464.94E−073.37410243D83402Hs. 302085prostaglandin I2 (prostacyclin) synthase4.88E−023.35412634U55984heat shock 90 kD protein 1, alpha2.51E−043.35419970AW612022ESTs8.62E−033.35439717W94472Hs. 59529ESTs, Moderately similar to ALU1_HUMAN A1.29E−023.35444013T08531Hs. 44404Homo sapiens PRO1488 mRNA, complete cds5.91E−033.35444454BE018316Hs. 11183sorting nexin 21.37E−043.35439776AL360140Hs. 176005Homo sapiens mRNA full length insert cDN4.36E−033.34408989AW361666Hs. 49500KIAA0746 protein3.99E−053.34452187AA400200Hs. 19131transcription factor Dp-2 (E2F dimerizat7.94E−033.33457701AW855466Hs. 271866ESTs, Weakly similar to ALU1_HUMAN ALU S7.23E−043.33418318U47732Hs. 84072transmembrane 4 superfamily member 34.54E−043.33438922R71288Hs. 259664ESTs6.44E−033.33430008AW085625Hs. 186838ESTs, Weakly similar to Z295_HUMAN ZINC1.06E−023.33438543AA810141Hs. 192182ESTs2.16E−053.32447188H65423Hs. 17631hypothetical protein DKFZp434E21351.29E−023.32454064AI130731Hs. 57967ESTs1.10E−023.32433198AA992841Hs. 27263KIAA1458 protein3.04E−023.32402041C15001201*: gi|6841178|gb|AAF28942.1|AF163.19E−033.31441028AI333660Hs. 17558Homo sapiens cDNA FLJ14446 fis, clone HE9.30E−043.31433483AI926520Hs. 31016putative DNA binding protein1.45E−023.31419126AI810144Hs. 135276ESTs6.17E−033.30417052NM_000712Hs. 81029biliverdin reductase A1.91E−053.30433907AW296107Hs. 152686ESTs4.37E−033.29433364AI075407Hs. 296083ESTs, Moderately similar to I54374 gene1.75E−073.29449188AW072939Hs. 347187myotubularin related protein 18.61E−053.29442831AI798959Hs. 131686ESTs2.81E−043.28420985X94703RAB28, member RAS oncogene family1.02E−033.28446111W56338Hs. 13880CGI-143 protein1.24E−023.28456984AB002349Ral guanine nucleotide exchange factor R6.43E−033.28418945BE246762Hs. 89499arachidonate 5-lipoxygenase3.66E−043.27427675AW138190Hs. 180248zinc finger protein 124 (HZF-16)6.43E−053.27444030AW021254Hs. 135055ESTs1.75E−023.27423828AA331536gb: EST35377 Embryo, 8 week I Homo sapien4.17E−033.26426030BE243933Hs. 108642zinc finger protein 22 (KOX 15)5.21E−023.26411777BE067552gb: MR4-BT0358-020200-002-g10 BT0358 Homo1.59E−033.26413568AA130381Hs. 180257ESTs2.16E−053.25421828AW891965histone deacetylase 31.01E−023.25439389AA318940Hs. 56004ESTs4.72E−023.25442297NM_006202Hs. 89901phosphodiesterase 4A, cAMP-specific (dun3.50E−033.25451099R52795Hs. 25954interleukin 13 receptor, alpha 21.76E−023.25424915R42755Hs. 23096ESTs2.92E−033.24452279AA286844hypothetical protein FLJ131649.93E−023.24418791AA935633Hs. 194628ESTs5.92E−033.24453822NM_014116Hs. 35416PRO0132 protein7.15E−023.24456119AA161411Hs. 58668chromosome 21 open reading frame 571.44E−033.23439708AI761369Hs. 59584hypothetical protein FLJ211441.03E−043.23400189Eos Control1.34E−023.22430929AA489166Hs. 156933ESTs4.54E−043.22453128AW026516Hs. 31791acylphosphatase 2, muscle type350E−033.22413129AF292100Hs. 104613RP42 homolog3.67E−043.22435126AI393666Hs. 42315p10-binding protein5.04E−023.22417831H16423Hs. 82685CD47 antigen (Rh-related antigen, integr9.76E−043.21449209BE616830Hs. 294145ESTs3.05E−033.20414821M63835Hs. 77424Fc fragment of IgG, high affinity la, re3.03E−023.20442961BE614474F-box only protein 225.10E−053.20436854AA749167Hs. 173911ESTs2.04E−023.20450222U75308Hs. 24644TATA box binding protein (TBP)-associate2.32E−033.20426312AF026939Hs. 181874interferon-induced protein with tetratri3.66E−073.18418757AI864193Hs. 169728hypothetical protein FLJ131504.99E−033.18422150AI867118calpastatin2.83E−023.18403478NM_022342: Homo sapiens kinesin protein 96.11E−023.17414650AA150435Hs. 8248ESTs5.04E−023.17431188W05656Hs. 169755ESTs1.19E−023.17436262AA707425gb: ag83f05.r1 Stratagene hNT neuron (9376.44E−033.17439680AW245741Hs. 58461ESTs, Weakly similar to A35659 krueppel-3.50E−033.17447371AA334274Hs. 18368DKFZP564B0769 protein1.51E−023.17448914AI927656Hs. 196459ESTs9.91E−023.17448481W15284Hs. 74832ESTs3.35E−033.17414449AA557660Hs. 76152decorin3.49E−023.15418721NM_002731Hs. 87773protein kinase, cAMP-dependent, catalyti1.71E−043.15407821AA346172Hs. 195614ESTs2.65E−043.15410390AA876905Hs. 125286ESTs6.72E−033.15412977AA125910Hs. 191461ESTs6.51E−043.15426506AW935187Hs. 170162KIAA1357 protein2.81E−043.15436169AA888311Hs. 17602Homo sapiens cDNA FLJ 12381 fis, clone MA7.20E−043.15441879AI521936Hs. 107149novel protein similar to archaeal, yeast1.29E−043.15444342NM_014398Hs. 10887similar to lysosome-associated membrane3.41E−073.15448919AI590605Hs. 191036ESTs3.04E−033.15408683R58665Hs. 46847TRAF and TNF receptor-associated protein2.03E−063.15436535AW295687Hs. 254420ESTs1.29E−043.14411060NM_006074Hs. 318501Homo sapiens mRNA full length insert cDN2.74E−073.14419195AW291165Hs. 25447ESTs4.57E−033.14434821AA159111Hs. 284281Human putative ribosomal protein S1 mRNA1.36E−043.14450056BE047394Hs. 8208ESTs, Weakly similar to S71512 hypotheti2.66E−043.13429286AA449239Hs. 154855ESTs1.13E−033.13418027AB037807Hs. 83293hypothetical protein6.08E−053.13450374AA397540Hs. 60293Homo sapiens clone 122482 unknown mRNA5.05E−023.13426381T61692Hs. 269340ESTs7.37E−023.12413838AV661185Hs. 75574mitochondrial ribosomal protein L192.43E−033.12408931AA251995Hs. 334648poly(A) polymerase alpha4.97E−033.12430532D61216Hs. 18672ESTs4.77E−033.12446177AK001902Hs. 14202hypothetical protein FLJ110401.80E−043.11407436AF211977gb: Homo sapiens LENG10 mRNA, partial seq1.63E−023.11418733AA227714KIAA0129 gene product2.03E−063.11403027C21000364*: gi|8394509|ref|NP_058778.1|u8.80E−043.11419257X53461Hs. 89781upstream binding transcription factor, R1.15E−043.11410425BE278367Hs. 63510KIAA0141 gene product1.63E−023.10426647AA243464Hs. 294101pre-B-cell leukemia transcription factor1.92E−033.10434629AA789081Hs. 4029glioma-amplified sequence-412.12E−033.10418182AW016405Hs. 16648ESTs1.67E−033.09449832AA694264Hs. 60049ESTs2.73E−023.09407813AL120247Hs. 40109KIAA0872 protein2.26E−043.08452664AA398859Hs. 18397hypothetical protein FLJ232213.07E−063.08410851AW612147Hs. 32058Homo sapiens C1orf19 mRNA, partial cds2.79E−033.07448362AA641767Hs. 21015hypothetical protein DKFZp564L0864 simil4.14E−023.07449656AA002008Hs. 188633ESTs2.02E−033.07416039AA376989Hs. 78989alcohol dehydrogenase 5 (class III), chi1.03E−033.07418729AB028449Hs. 87889helicase-moi2.52E−043.07431629AU077025Hs. 265827interferon, alpha-inducible protein (clo2.74E−073.06437151AA745618BANP homolog, SMAR1 homolog5.93E−023.06414948C15240Hs. 182155ESTs8.63E−053.05419465AW500239Hs. 21187Homo sapiens cDNA: FLJ23068 fis, clone L2.63E−023.05432680T47364Hs. 278613interferon, alpha-inducible protein 271.75E−073.05418627AL079835Hs. 86858ribosomal protein S6 kinase, 70 kD, polyp1.02E−033.04408753AI337192Hs. 47438SH3 domain binding glutamic acid-rich pr1.75E−023.04421654AW163267Hs. 106469suppressor of var1 (S. cerevisiae) 3-like6.12E−023.03421272AA704157ESTs7.22E−043.03420174AI824144Hs. 199749ESTs4.79E−053.03439024R96696Hs. 35598ESTs3.61E−023.03407705AB023139Hs. 37892KIAA0922 protein4.29E−043.02409977AW805510Hs. 97056hypothetical protein FLJ216345.58E−043.02411960R77776Hs. 18103ESTs1.05E−023.02437086AW291411Hs. 192531ESTs, Weakly similar to S00754 zinc fing5.20E−033.02442071BE048433Hs. 276043ESTs2.02E−033.02448030N30714Hs. 325960membrane-spanning 4-domains, subfamily A4.87E−023.02430068AA464964gb: zx80f10.s1 Soares ovary tumor NbHOT H9.30E−043.02436090AI640635Hs. 332879EST2.04E−023.01408047AW205461Hs. 243612ESTs1.81E−043.00412288NM_003005Hs. 73800selectin P (granule membrane protein 1405.91E−033.00432474AA584042gb: nn65e09.s1 NCI_CGAP_Lar1 Homo sapiens6.72E−023.00446851AW007332Homo sapiens cDNA: FLJ22063 fis, clone H2.43E−033.00451171AA248829Hs. 112921gb: jj6059.seq.F Human fetal heart, Lambd7.98E−043.00452429AK000149Hs. 29493hypothetical protein FLJ201428.96E−033.00413278BE563085Hs. 833interferon-stimulated protein, 15 kDa1.75E−072.98426221AB007881KIAA0421 protein2.55E−032.98411190AA306342Hs. 69171protein kinase C-like 23.87E−022.97444437AI377961Hs. 44041ESTs8.62E−032.97451572AA018556Hs. 268691ESTs, Moderately similar to ALU2_HUMAN A1.09E−042.97452420BE564871Hs. 29463centrin, EF-hand protein, 3 (CDC31 yeast6.84E−052.97412675AA460716Hs. 9788hypothetical protein MGC10924 similar to2.04E−022.97446215AW821329Hs. 14368SH3 domain binding glutamic acid-rich pr6.45E−032.96442287AW952703Hs. 8182synaptic nuclei expressed gene 1b1.67E−032.96439658AA332057Hs. 6639hypothetical protein MGC154405.03E−042.96400471Target Exon6.12E−022.95431266AW149321Hs. 105411ESTs2.12E−032.95404433C8000067*: gi|10432400|emb|CAC10290.1|(A1.75E−022.95435852H72303Hs. 36011ESTs4.18E−032.95437275AW976035Hs. 292396ESTs, Weakly similar to A47582 B-cell gr4.18E−032.95439601AB029032Hs. 6606KIAA1109 protein1.50E−022.95458455AV648310Hs. 213488ESTs8.62E−032.95411943BE502436Hs. 7962ESTs, Weakly similar to S44608 C02F5.6 p7.94E−032.95421718AL117574Hs. 193602Homo sapiens mRNA; cDNA DKFZp434L2221 (f1.71E−042.94450256AA286887Hs. 24724MFH-amplified sequences with leucine-ric7.26E−052.94401898NM_024722*: Homo sapiens hypothetical pro4.00E−032.94458368BE504731Hs. 138827ESTs2.92E−032.94456563AA989220Hs. 766ESTs1.51E−022.93402836ENSP00000251163*: Membrane-associated gua3.86E−022.92409444H47933Hs. 33983ESTs, Weakly similar to ALU6_HUMAN ALU S1.08E−042.92418522AA605038Hs. 7149Homo sapiens cDNA: FLJ21950 fis, clone H4.30E−042.92423129L44396Hs. 124106Homo sapiens cDNA FLJ11941 fis, clone HE4.77E−032.92426279AI648520Hs. 169084tubby like protein 31.75E−022.92441969AI733386ESTs, Weakly similar to ALU1_HUMAN ALU S7.20E−042.92446552AW470827Hs. 156241ESTs2.02E−042.92451644N23235Hs. 30567ESTs, Weakly similar to B34087 hypotheti2.25E−042.92403330Target Exon7.23E−042.92414617AI339520Hs. 288817ESTs, Moderately similar to N Chain N, M3.77E−052.92459436AA323121gb: EST25881 Cerebellum II Homo sapiens c6.52E−042.91420181AI380089Hs. 158951ESTs7.30E−032.91447002BE242866Hs. 16933HepA-related protein2.49E−062.91408212AA297567Hs. 43728hypothetical protein1.19E−032.91417008AA191708Hs. 325825Homo sapiens cDNA FLJ20848 fis, clone AD1.52E−032.90434263N34895Hs. 79187ESTs7.62E−032.90403743C1002604: gi|8393668|ref|NP 058989.1|kin7.94E−032.90414429R51494Hs. 71818ESTs9.10E−022.90420265AA766209Hs. 88087ESTs2.93E−022.90420683AA830168Hs. 271305ESTs1.06E−022.90426590AA617830Hs. 28310ESTs2.02E−032.90428738NM_000380Hs. 192803xeroderma pigmentosum, complementation g1.25E−032.90437108AA434054Hs. 80624hypothetical protein MGC25601.75E−022.90451078AI927694Hs. 340945ESTs8.83E−022.90442439U09759Hs. 246857mitogen-activated protein kinase 97.24E−052.90409939AA463437Hs. 11556Homo sapiens cDNA FLJ12566 fis, clone NT2.52E−042.90414493AL133921Hs. 76272retinoblastoma-binding protein 21.58E−052.90434045AI065133Hs. 152316hypothetical protein PRO09719.77E−042.90440668AI989538Hs. 191074ESTs2.22E−032.89446217AI651594Hs. 99709ESTs4.26E−072.89438914N93892Hs. 10727ESTs2.11E−022.89443303U67319Hs. 9216caspase 7, apoptosis-related cysteine pr1.81E−042.89418584NM_004606Hs. 1179TATA box binding protein (TBP)-associate3.66E−032.88428695AI355647Hs. 189999purinergic receptor (family A group 5)4.24E−052.88436372AW972301Hs. 310286ESTs1.03E−042.87411360AK001601Hs. 69594high-mobility group 20A3.61E−022.87437456AL047045Hs. 60293Homo sapiens clone 122482 unknown mRNA2.55E−032.86448198BE622100Hs. 209406ESTs, Weakly similar to I38600 zinc fing5.39E−052.86428974AA442693Hs. 272006ESTs, Weakly similar to I38022 hypotheti3.33E−052.86423568NM_005256Hs. 129818growth arrest-specific 25.04E−042.85418796AA228351Hs. 34060ESTs2.79E−042.85406274Target Exon4.78E−042.85427209H06509Hs. 92423KIAA1566 protein2.61E−052.85430280AA361258Hs. 237868interleukin 7 receptor2.11E−032.85440760AK001145Hs. 284216hypothetical protein FLJ102833.19E−032.85415914AA306033Hs. 78915GA-binding protein transcription factor,7.37E−022.85448569BE382657Hs. 21486signal transducer and activator of trans1.75E−072.84425284AF155568NS1-associated protein 11.59E−032.84422614AI908006Hs. 295362Homo sapiens cDNA FLJ14459 fis, clone HE6.44E−032.84424755AB033094Hs. 152925KIAA1268 protein1.08E−062.83411617AA247994neurocalcin delta2.63E−022.83452699AW295390Hs. 213062ESTs8.27E−032.83401197ENSP00000229263*: HSPC213.4.72E−022.82409205AI952884Hs. 14832ESTs, Moderately similar to unnamed prot1.06E−022.82429503AA394183Hs. 204166ESTs3.50E−032.82436114AA778232Hs. 19515ESTs, Highly similar to NRG3_HUMAN PRO-N8.26E−032.82445564AB028957Hs. 12896KIAA1034 protein1.50E−022.82443280AA299688Hs. 24183ESTs2.55E−032.82410541AA065003Hs. 64179syntenin-2 protein2.55E−032.82439653AW021103Hs. 6631hypothetical protein FLJ203736.73E−032.82446238T95143Hs. 14511SCO (cytochrome oxidase deficient, yeast3.13E−042.82428418AI368826Hs. 8768ESTs6.46E−052.81431392AI371223Hs. 288671Homo sapiens cDNA FLJ11997 fis, clone HE6.18E−032.81434519AA635727Hs. 136581ESTs, Weakly similar to ARNO_HUMAN ARF N2.32E−032.80430027AB023197Hs. 227743KIAA0980 protein1.90E−062.80425836AW955696Hs. 90960ESTs4.78E−052.80428821H91282Hs. 286232Homo sapiens cDNA: FLJ23190 fis, clone L8.62E−032.80439773AI051313Hs. 143315ESTs5.41E−032.80432485N90866Hs. 276770CDW52 antigen (CAMPATH-1 antigen)1.01E−062.80456508AA502764Hs. 123469ESTs, Weakly similar to AF208855 1 BM-014.98E−032.79436235AI084982Hs. 120790ESTs8.15E−052.79421446AA682425Hs. 118959ESTs1.34E−022.78421524AA312082Hs. 105445GDNF family receptor alpha 11.69E−052.77421743T35958Hs. 107614DKFZP564I1171 protein3.48E−042.76404676Target Exon7.31E−032.75411352NM_002890Hs. 758RAS p21 protein activator (GTPase activa1.59E−032.75424381AA285249Hs. 146329protein kinase Chk2 (CHEK2)2.54E−022.75426416AW612744Hs. 169824killer cell lectin-like receptor subfami2.18E−022.75432134AI816782Hs. 122583hypothetical protein FLJ219341.84E−032.75434521NM_002267Hs. 3886karyopherin alpha 3 (importin alpha 4)221E−032.75434963AW974957Hs. 288719Homo sapiens cDNA FLJ12142 fis, clone MA2.63E−022.75436184BE154067Hs. 136660ESTs, Weakly similar to ZN91_HUMAN ZINC3.20E−032.75439605AF086431Hs. 22380ESTs8.61E−052.75449259AW452058Hs. 257519ESTs3.66E−042.75452057AW952005Hs. 14928hypothetical protein FLJ129033.83E−032.75422231AA443512Hs. 101383ESTs1.84E−032.75418941AA452970Hs. 239527E1B-55 kDa-associated protein 55.56E−022.74424637NM_015057Hs. 151411KIAA0916 protein8.30E−062.74436741AA860163Hs. 291319ESTs2.79E−032.72439462AL133026Hs. 6567Homo sapiens mRNA; cDNA DKF2p434C136 (fr1.31E−032.72414522AW518944Hs. 76325Immunoglobulin J chain2.12E−032.72426125X87241Hs. 166994FAT tumor suppressor (Drosophila) homolo6.94E−022.72427297AW292593Hs. 334907Homo sapiens, clone MGC: 17333, mRNA, com2.02E−042.72423067AA321355Hs. 285401colony stimulating factor 2 receptor, be6.17E−032.72444745AF117754Hs. 11861thyroid hormone receptor-associated prot9.77E−042.72420962NM_005904Hs. 100602MAD (mothers against decapentaplegic, Dr1.68E−052.72435427AA682573Hs. 188982ESTs, Weakly similar to organic anion tr1.67E−032.71453779N35187Hs. 4338828 kD interferon responsive protein3.17E−072.71439559AW364675Hs. 173921ESTs, Weakly similar to 2109260A B cell1.25E−032.71451119AA805417Hs. 64753ESTs7.60E−032.70420825AI656727Hs. 194657gb: tt53f12.x1 NCI_CGAP_GC6 Homo sapiens5.58E−042.70440538W76332Hs. 79107mitogen-activated protein kinase 141.45E−022.70407796AA195509Hs. 39733postsynaptic protein CRIPT3.49E−032.70401635C11000702: gi|10048448|ref|NP_065258.1|g1.24E−022.70408051AI623351Hs. 172148ESTs3.04E−022.70411213AA676939Hs. 69285neuropilin 11.45E−022.70412935BE267045Hs. 75064tubulin-specific chaperone c1.49E−052.70416048H16268gb: ym22a06.r1 Soares infant brain 1NIB H4.07E−042.70445715AB012958Hs. 13137UV radiation resistance associated gene3.48E−042.70437145AF007216Hs. 5462solute carrier family 4, sodium bicarbon1.29E−022.69414404W16712KIAA0306 protein3.99E−052.68420058AK001423Hs. 94694Homo sapiens cDNA FLJ10561 fis, clone NT1.91E−052.68417558AF045229Hs. 82280regulator of G-protein signalling 102.54E−022.68420339AW968259Hs. 186647ESTs1.62E−042.68419497NM_006410Hs. 90753Tat-interacting protein (30 kD)1.51E−032.67426797AW936258Hs. 342849ADP-ribosylation factor-like 58.07E−022.67430594AK000790Hs. 246885hypothetical protein FLJ207834.88E−022.67433312AI241331Hs. 131765ESTs, Moderately similar to I38937 DNA/R7.59E−042.67437838AI307229ESTs1.19E−032.67438182AW342140Hs. 182545ESTs, Weakly similar to ALU1_HUMAN ALU S7.69E−052.67450468AW379075Hs. 141742Homo sapiens cDNA FLJ12211 fis, clone MA5.67E−032.67431315AW972227Hs. 163986Homo sapiens cDNA: FLJ22765 fis, clone K2.81E−042.67425548AA890023Hs. 1906prolactin receptor7.58E−042.67434669AF151534Hs92023core histone macroH2A2.26.01E−062.67409600AJ011679Hs. 55099rab6 GTPase activating protein (GAP and1.08E−042.66417928AA209344Hs. 30177ESTs1.81E−042.66418832X04011Hs. 88974cytochrome b-245, beta polypeptide (chro2.52E−042.66452696AI826645Hs. 211534ESTs2.45E−052.66426126AL118747Hs. 26691ESTs6.18E−042.66427528AU077143Hs. 179565minichromosome maintenance deficient (S.2.45E−052.65434384AA631910ESTs2.79E−032.65440529AW207640Hs. 16478Homo sapiens cDNA: FLJ21718 fis, clone C8.62E−032.65446830BE179030Human DNA sequence from clone RP5-1174N96.85E−042.65443405AF031463Hs. 9302phosducin-like2.65E−042.65407807AL031427Hs. 40094Human DNA sequence from clone 167A19 on2.43E−032.65421919AJ224901Hs. 109526zinc finger protein 1981.38E−032.64429617X89984Hs. 211563B-cell CLL/lymphoma 7A3.65E−032.63403976Target Exon2.43E−032.63435631BE254086Hs. 29647uncharacterized hematopoietic stem/proge7.30E−032.63447657AI953011ESTs1.52E−032.63412520AA442324Hs. 795H2A histone family, member O5.74E−052.62417317AW296584Hs. 293782ESTs5.71E−052.62450331AA009536Hs. 38323ESTs1.10E−022.61438441AW664960Hs. 205319ESTs2.26E−042.61413836W92003Hs. 70614ESTs1.24E−022.61446006NM_004403Hs. 13530deafness, autosomal dominant 51.45E−022.60431214AA294921Hs. 348024v-ral simian leukemia viral oncogene horn1.39E−022.60422283AW411307Hs. 114311CDC45 (cell division cycle 45, S.cerevis1.08E−042.60425118AU076611Hs. 154672methylene tetrahydrofolate dehydrogenase9.36E−032.60442432BE093589Hs. 38178hypothetical protein FLJ234686.43E−052.60452014AI828174Hs. 227049ESTs1.39E−022.60408138AA535740tumor protein p53-binding protein, 11.75E−022.60457819AA057484Hs. 35406ESTs, Highly similar to unnamed protein2.27E−022.60451578NM_016323Hs. 26663cyclin-E binding protein 11.16E−062.59428330L22524Hs. 2256matrix metalloproteinase 7 (matrilysin,1.51E−022.59444057AA316896Hs. 257267FYVE and coiled-coil domain containing 12.26E−042.58401928Target Exon7.00E−032.57424375AF070547Hs. 146312Homo sapiens clone 24820 mRNA sequence3.87E−022.57445106T10219Hs. 12329KIAA0697 protein7.60E−042.57447211AL161961Hs. 17767KIAA1554 protein3.68E−072.57427704AW971063Hs. 292882ESTs7.84E−022.56430399AI916284Hs. 199671ESTs5.58E−042.56422461NM_003417Hs. 117077zinc finger protein 2641.30E−032.56401952Target Exon1.05E−022.56422392NM_005908Hs. 115945mannosidase, beta A, lysosomal7.14E−022.56422722H74219Hs. 269772ESTs1.44E−032.56414279AW021691GCN5 (general control of amino-acid synt9.09E−022.55446934AK001943Hs. 16577F-box only protein 35.20E−032.55434948AI498469Hs. 12622ESTs, Highly similar to AF161436 1 HSPC32.73E−022.55438865H64256Hs. 167619ESTs, Moderately similar to ALUC_HUMAN!8.08E−022.55439372AF088033Hs. 159225ESTs3.25E−022.55445757AW449065Hs. 13264KIAA0856 protein3.35E−032.55409614BE297412Hs. 55189hypothetical protein2.74E−072.55423932T95633Hs. 189703ESTs4.73E−022.55451743AW074266Hs. 23071ESTs8.16E−052.54416272AA178882gb: zp38b09.r1 Stratagene muscle 937209 H1.29E−022.53446161AA628206Hs. 14125p53 regulated PA26 nuclear protein1.45E−032.53425303AA354785gb: EST63098 Jurkat T-cells V Homo sapien2.04E−022.53451253H48299Hs. 26126claudin 101.38E−032.52408340AB037762Hs. 44268myelin gene expression factor 26.42E−052.52410678BE540516Hs. 293732hypothetical protein MGC31951.31E−032.52414792BE314949Hs. 87128hypothetical protein FLJ233094.23E−062.52447387AI268331Hs. 102237tubby super-family protein3.51E−062.52407765AW076027Hs. 257711ESTs, Moderately similar to ALU8_HUMAN A3.49E−022.51421471U90545Hs. 327179solute carrier family 17 (sodium phospha2.19E−022.51438980AW502384gb: UI-HF-BR0p-aka-f-12-0-UI.r1 NIH_MGC_51.39E−022.51453906AW444952Hs. 257054ESTs3.83E−032.51414760BE298063Hs. 77254chromobox homolog 1 (Drosophila HP1 beta8.78E−072.51434822AW076088Hs. 4187hypothetical protein 246362.38E−042.51458079AI796870Hs. 54277DNA segment on chromosome X (unique) 9921.15E−052.50408521AA055264Hs. 260848ESTs, Weakly similar to S23650 retroviru1.39E−052.50409161W07662Hs. 50861sirtuin (silent mating type information5.39E−052.50411931AW675180Hs. 36828ESTs2.28E−022.50414172AW954324Hs. 75790phosphatidylinositol glycan, class C4.17E−032.50414502AL133721Hs. 224680ESTs6.44E−032.50420613AI873871Hs. 7041ESTs, Weakly similar to A47582 B-cell gr4.60E−062.50422195AB007903Hs. 113082KIAA0443 gene product1.89E−022.50423645AI215632Hs. 147487ESTs1.62E−042.50427210BE396283Hs. 173987eukaryotic translation initiation factor1.96E−022.50430273AI311127Hs. 125522ESTs1.25E−032.50445664AW968638Hs. 237691ESTs, Weakly similar to KIAA0601 protein4.30E−042.50437708AB033020Hs. 5801KIAA1194 protein8.63E−052.50439748AL389934Hs. 23248hypothetical protein from EUROIMAGE 20056.71E−032.50435727T78475Hs. 269542ESTs, Weakly similar to S65657 alpha-1C-1.19E−022.49414602AW630088Hs. 76550Homo sapiens mRNA; cDNA DKFZp564B1264 (f7.23E−042.49451693BE220445Hs. 279635ESTs1.29E−022.49443849BE566066Hs. 9893ASB-3 protein2.79E−032.48421405AA251944Hs. 104058CGI-29 protein7.60E−042.48446591H44186Hs. 15456PDZ domain containing 12.68E−062.48432348AA534353Hs. 194081ESTs, Weakly similar to I38022 hypotheti4.76E−032.48415323BE269352Hs. 949neutrophil cytosolic factor 2 (65 kD, chr2.73E−022.48416436H55746Hs. 28704ESTs, Weakly similar to A45910 ultra-hig2.20E−022.48446044H67567Hs. 13572calcium modulating ligand2.03E−062.48446771AA128965Hs. 60679TATA box binding protein (TBP)-associate7.27E−052.48407112AA070801Hs. 51615ESTs, Weakly similar to ALU7_HUMAN ALU S7.60E−022.47410196AI936442Hs. 59838hypothetical protein FLJ108083.30E−042.47427254AL121523Hs. 97774ESTs9.75E−032.47430487D87742Hs. 241552KIAA0268 protein7.98E−042.47452480AI903526gb: RC-BT031-090199-063 BT031 Homo sapien1.51E−022.47422473U94780Hs. 117242meningioma expressed antigen 6 (coiled-c7.00E−032.47405117C11000181*: gi|7305349|ref|NP_038647.1|o1.37E−032.47449082BE387561Hs. 22981DKFZP586M1523 protein6.16E−042.47439815AA206079Hs. 6693hypothetical protein FLJ204202.02E−042.47408145AF182316Hs. 234680fer-1 (C. elegans)-like 3 (myofertin)5.38E−022.47448122AW665656Hs. 173187ESTs5.92E−022.47414895AW894856Hs. 116278Homo sapiens cDNA FLJ13571 fis, clone PL3.82E−032.46439747AK001148Hs. 6671COP9 complex subunit 46.85E−042.46440706AA927562Hs. 148234ESTs2.79E−032.46400557Target Exon3.14E−022.46456721AA533356gb: nj67f10.s1 NCI_CGAP_Pr10 Homo sapiens4.00E−032.45416354NM_000633Hs. 79241B-cell CLL/lymphoma 2 (BCL2)5.04E−042.45418203X54942Hs. 83758CDC28 protein kinase 24.57E−032.45423983AA333261gb: EST37476 Embryo, 8 week 1 Homo sapien1.10E−022.45434128W93170Hs. 284164protein x 00041.62E−042.45438141AW946871gb: RC2-ET0022-080500-012-d02 ET0022 Homo3.34E−032.45449239T24653Hs. 23360likely ortholog of yeast ARV13.06E−062.45422241Y00062Hs. 170121protein tyrosine phosphatase, receptor t1.49E−052.45414462BE622743Hs. 301064arfaptin 15.44E−032.44423706U95218Hs. 131924G protein-coupled receptor 652.55E−032.44431661AB037830Hs. 267150KIAA1409 protein1.71E−042.44413856D13639Hs. 75586cyclin D24.57E−032.44422684BE561617Hs. 119192H2A histone family, member Z6.72E−032.44420623BE245485Hs. 99437Homo sapiens mRNA; cDNA DKFZp586G1924 (f6.45E−032.43417377NM_016603Hs. 82035potential nuclear protein C5ORF5; GAP-li1.79E−052.43409884AI904455Hs. 142684hypothetical protein DKFZp667O1161.59E−032.43452748AB011128Hs. 30512Homo sapiens mRNA for KIAA0556 protein,1.31E−032.43434500AF143877Hs. 215047Homo sapiens clone IMAGE: 113431 mRNA seq3.49E−022.43436021R26877Hs. 24128ESTs3.25E−022.42442149AB014550Hs. 8118KIAA0650 protein3.50E−032.42408411C15118Hs. 322482hypothetical protein DKFZp566J20469.48E−062.42407656AW747986Hs. 37443Homo sapiens mRNA; cDNA DKFZp434B2119 (f4.08E−042.42430587AK000341Hs. 246107elongation of very long chain fatty acid4.52E−052.41412019AA485890Hs. 69330Homo sapiens cDNA FLJ13835 fis, clone TH1.81E−042.41457650AA649162Hs. 236456ESTs4.25E−052.41458971AL119206Hs. 101874ESTs, Weakly similar to ALU1_HUMAN ALU S2.28E−022.41433902AW292820Hs. 144906ESTs5.91E−032.41439645BE091801Hs. 27167ESTs, Weakly similar to I38022 hypotheti1.77E−062.41430007NM_014892Hs. 227602KIAA1116 protein2.32E−032.41427547BE047653Hs. 119183ESTs, Weakly similar to ZN91_HUMAN ZINC3.49E−032.41448749AW859679Hs. 21902Homo sapiens clone 25237 mRNA sequence1.84E−032.40444913AI362726Hs. 193656Homo sapiens mRNA for KIAA1658 protein,5.39E−052.40428466AF151063Hs. 184456hypothetical protein4.00E−032.40408636BE294925Hs. 46680CGI-12 protein3.06E−032.40416517AA775987Hs. 79357proteasome (prosome, macropain) 26S subu1.06E−022.40438041AI394551ESTs4.56E−022.40444088AW297946Hs. 138208ESTs2.54E−022.40449118R67477Hs. 23103Bet1 (S. cerevisiae) homolog2.93E−022.40452253AA928891Hs. 28608Homo sapiens cDNA: FLJ22115 fis. clone H1.18E−032.40435872AA701357Hs. 192759ESTs1.59E−032.40409132AJ224538Hs. 50732protein kinase, AMP-activated, beta 2 no1.25E−062.40414256AW410035Hs. 75862MAD (mothers against decapentaplegic, Dr2.93E−022.39459680H96982Hs. 42321ESTs2.14E−042.39427657AV652249Hs. 180107polymerase (DNA directed), beta7.07E−072.39446570AV659177Hs. 127160ESTs2.31E−052.38415668AW957684Hs. 306814hypothetical protein FLJ218894.57E−022.38428985AL134193Hs. 194709paraneoplastic antigen MA14.00E−032.38438030X98427Hs. 122634ESTs2.33E−032.38457605AV657778Hs. 3314selenoprotein P, plasma, 12.32E−032.38422043AL133649Hs. 110953retinoic acid induced 11.31E−032.38425375AA631977Hs. 155995KIAA0643 protein2.44E−052.38427020AA397546Hs. 119151ESTs1.01E−022.38440341AW664012Hs. 132333ESTs1.93E−032.38424321W74048Hs. 1765lymphocyte-specific protein tyrosine kin2.38E−042.37416611AA568308ESTs, Weakly similar to ALU6_HUMAN ALU S2.67E−032.37416065BE267931Hs. 78996proliferating cell nuclear antigen6.21E−042.37419424BE041820Hs. 38516Homo sapiens, clone MGC: 15887, mRNA, com4.30E−042.36452207NM_014517Hs. 28423upstream binding protein 1 (LBP-1a)5.71E−052.36414496W73853ESTs1.92E−032.36451107AA235108Hs. 17639Homo sapiens ubiquitin protein ligase (U7.59E−042.35452685AI634651Hs. 30250v-maf musculoaponeurotic fibrosarcoma (a6.41E−062.35411196W31212Hs. 69192vacuolar protein sorting 29 (yeast homol2.45E−022.35427647W19744Hs. 180059Homo sapiens cDNA FLJ20653 fis, clone KA1.62E−042.35422607Z45471Hs. 118684stromal cell-derived factor 24.30E−042.35427469AA403084Hs. 269347ESTs, Weakly similar to 2109260A B cell9.74E−032.35429065AI753247Hs. 29643Homo sapiens cDNA FLJ13103 fis, clone NT1.06E−022.35439103AF085959Hs. 38705ESTs2.43E−032.35427094AB025254Hs. 283761tudor repeat associated with PCTAIRE 27.02E−072.35451789AW291532Hs. 211297ESTs3.20E−032.35414436U50078Hs. 76127hect (homologous to the E6-AP (UBE3A) ca5.43E−032.35446487AA195526Hs. 44625Rad50-interacting protein 12.79E−032.34411580AL080088Hs. 70877DKFZP564K2062 protein1.80E−042.34413880AI660842Hs. 110915interleukin 22 receptor5.87E−042.33431899AA521381Hs. 187726ESTs1.06E−022.33450607AL050373Hs. 25213hypothetical protein2.30E−052.33440726AL050333Hs. 306425DKFZP564B116 protein4.14E−022.33417089H52280Hs. 18612Homo sapiens cDNA: FLJ21909 fis, clone H1.17E−062.33450919AA011616Hs. 269877ESTs6.72E−032.33414312AA155694Hs. 191060ESTs5.88E−042.32421025AW958975Hs. 29397Homo sapiens cDNA FLJ13226 fis, clone OV2.26E−042.32439556AI623752Hs. 163603ESTs2.36E−022.32424528AW073971Hs. 238954ESTs, Weakly similar to KIAA1204 protein1.25E−032.32423365AA324992Hs. 257168ESTs3.20E−032.32403920suppressor of potassium transport defect4.14E−022.32448280AW014215Hs. 357zinc finger protein 134 (clone pHZ-15)2.54E−032.32407687AK002011Hs. 37558hypothetical protein FLJ111493.99E−032.31409259AW608930Hs. 52184hypothetical protein FLJ206182.16E−062.30407804AF228603Hs. 39957pleckstrin 2 (mouse) homolog5.21E−032.30423968AF098277Hs. 136529solute carrier family 23 (nucleobase tra1.31E−052.30414525C14904Hs. 45184Homo sapiens cDNA FLJ12284 fis, clone MA1.44E−032.30420164AW339037Hs. 24908ESTs2.63E−022.30422900AA641201Hs. 222051ESTs1.08E−032.30423799AW026300Hs. 13290619A24 protein3.35E−032.30440390AW207385Hs. 36475KIAA0493 protein1.92E−032.30456351AW971067Hs. 293056ESTs, Weakly similar to 138022 hypotheti3.50E−032.30431341AA307211Hs. 251531proteasome (prosome, macropain) subunit.1.22E−042.30413029AL119399Hs. 293850ESTs5.05E−052.30453315BE544203Hs. 24831ESTs8.62E−032.30433160AW207002Hs. 134342TASP for testis-specific adriamycin sens1.96E−022.30420137AA306478Hs. 95327CD3D antigen, delta polypeptide (TiT3 co6.39E−062.30436252AI539519Hs. 120969Homo sapiens cDNA FLJ11562 fis, clone HE1.03E-−032.30437143AW204056Hs. 8917ESTs6.58E−072.30440495AA887212Hs. 14161hypothetical protein DKFZp434119301.75E−032.30419203AA488719Hs. 190151ESTs8.98E−032.30410017AW952426Hs. 109438Homo sapiens clone 24775 mRNA sequence2.02E−042.29415173AW501735Hs. 180059ESTs4.28E−022.29419200AW966405prefoldin 57.61E−072.29437109AW006781Hs. 5457hypothetical protein FLJ107383.12E−042.29438475W03856Hs. 13188ESTs, Highly similar to Gene product wit5.26E−062.28417206AA291183Hs. 81648hypothetical protein FLJ11021 similar to2.66E−032.27448410AK000227Hs. 21126hypothetical protein FLJ202207.37E−022.27448959AI610343Hs. 293267ESTs1.59E−032.27440528BE313555Hs. 7252KIAA1224 protein1.01E−022.27421620AA446183Hs. 91885ESTs, Weakly similar to 155214 salivary6.17E−032.27451589M424791Hs. 5734meningioma expressed antigen 5 (hyaluron4.56E−032.27421931NM_000814Hs. 1440gamma-aminobutyric acid (GABA) A recepto1.62E−042.27431831AW023204Hs. 302743ESTs8.40E−042.27428583AA430589Hs. 75410heat shock 70 kD protein 5 (glucose-regul5.91E−032.26452248AA093668Hs. 28578muscleblind (Drosophila)-like9.71E−052.26446045AV656268Hs. 209153angiopoietin-like 31.13E−032.26421297AB037360KIAA1255 protein3.13E−052.26440945AW505345Hs. 7540f-box and leucine-rich repeat protein 3A9.10E−022.26452852AK001972Hs. 30822hypothetical protein FLJ111101.31E−052.26403496C3000956*: gi|7710129|ref|NP_006141.2|LI1.19E−032.26439046M947354gb: od86e11.s1 NCI_CGAP_Ov2 Homo sapiens4.78E−042.25427268X78520Hs. 174139chloride channel 36.19E−042.25405122NM_006798*: Homo sapiens UDP glycosyltran1.59E−032.25403320fms-related tyrosine kinase 31.89E−022.25416754H07145Hs. 6799ESTs, Weakly similar to T12483 hypotheti1.52E−032.25418046W49670Hs. 56044ESTs2.04E−022.25418383AA218986Hs. 118854ESTs1.96E−022.25429025AI399910Hs. 266782KIAA1826 protein1.06E−022.25435756AI418466Hs. 33665ESTs2.01E−032.25440638AI376551gb: te64e10.x1 Soares_NFL_T_GBC.S1 Homo s1.39E−022.25447225R62676Hs. 17820Rho-associated, coiled-coil containing p2.81E−042.25434747AA837085ESTs1.25E−032.24453041AI680737Hs. 289068Homo sapiens cDNA FLJ11918 fis, clone HE2.45E−022.24445044AL137728Hs. 12258Homo sapiens mRNA; cDNA DKFZp434B0920 (f5.56E−022.24448939BE267795Hs. 22595hypothetical protein FLJ106371.01E−022.24450196AW956868Hs. 24608DKFZP564D177 protein4.52E−052.23453929AW190054gb: xl11d05.x1 NCI_CGAP_Ut4 Homo sapiens2.04E−022.23455959AA131782Hs. 182314ESTs1.10E−022.23446594AI311917Hs. 16292ESTs9.93E−022.23445893AI610702Hs. 202613ESTs, Weakly similar to TRHY_HUMAN TRICH1.09E−042.23432476T94344Hs. 326263ESTs1.56E−022.23448888AW196663Hs. 200242caspase recruitment domain protein 67.58E−042.23405270NM_018850*: Homo sapiens ATP-binding cass1.02E−022.22442806AW294522Hs. 149991ESTs2.45E−022.22450314AA574309Hs. 283402TCR eta4.77E−032.22452144AA032197Hs. 102558Homo sapiens, clone MGC: 5352, mRNA, comp2.39E−042.22452436BE077546Hs. 31447ESTs, Moderately similar to A46010 X-lin3.66E−032.22455834BE145364gb: IL0-HT0198-151099-125-e05 HT0198 Homo1.14E−022.22436643AA757626Hs. 10941ESTs, Weakly similar to IPP1_HUMAN PROTE5.03E−042.22448558AW340579Hs. 171165ESTs6.51E−042.22414091T83742Hs. 334616gb: yd67g02.s1 Soares fetal liver spleen2.80E−042.21421958AA357185Hs. 109918ras homolog gene family, member H5.58E−042.21433648AA603388Hs. 44131KIAA0974 protein1.75E−032.21428004AA449563Hs. 151393glutamate-cysteine ligase, catalytic sub4.72E−022.21446229AI744964Hs. 14449KIAA1609 protein5.58E−042.21421921H83363translocase of inner mitochondrial membr8.81E−042.20408866AW292096Hs. 255036ESTs1.14E−022.20400120Eos Control1.82E−022.20415000AW025529Hs. 239812Homo sapiens serologically defined breas1.61E−042.20408990AL022395Hs. 49526f-box and leucine-rich repeat protein 43.19E−032.20422371NM_001882Hs. 115617corticotropin releasing hormone-binding1.15E−042.20437580AA761075ESTs2.04E−022.20453927AA082465Hs. 125031choline/ethanolaminephosphotransferase4.60E−062.20405688NM_018850*: Homo sapiens ATP-binding cass2.52E−042.20427130AB029020Hs. 173694KIAA1097 protein6.45E−052.20414718H95348Hs. 107987ESTs1.96E−022.20409549AB029015Hs. 54886phospholipase C, epsilon 21.51E−032.20424904AI221739Hs. 96899ESTs8.95E−032.20449103T24968Hs. 23038HSPC071 protein3.87E−042.20413326H88621Hs. 19762ESTs, Weakly similar to KIAA1140 protein2.63E−022.19426011AW996096Hs. 58924ESTs, Weakly similar to JC5594 jerky gen1.67E−032.19443352H70284Hs. 160152ESTs, Weakly similar to FPHU alpha-fetop9.75E−032.19427156BE621719Hs. 173802KIAA0603 gene product4.14E−022.19418980T77130Hs. 268606ESTs3.60E−022.19425745U44060Hs. 159437Homo sapiens cDNA: FLJ21800 fis, clone H2.55E−032.19433162AI025842ESTs2.96E−042.19412240H72176hypothetical protein FLJ131593.35E−032.19440113AI916532Hs. 188272ESTs4.35E−032.19430526AF181862Hs. 242407G protein-coupled receptor, family C, gr2.81E−042.18447881BE620886GCN1 (general control of amino-acid synt1.51E−022.18407151H25836Hs. 301527ESTs, Moderately similar to unknown [H.s4.59E−072.18411590T96183gb: ye09f07.s1 Stratagene lung (937210) H3.04E−022.18413823AI341417Hs. 29406ESTs6.00E−062.18401627Target Exon8.62E−032.18414588AA302905gb: EST10607 Adipose tissue, white I Homo9.77E−042.18425508AA991551Hs. 97013Homo sapiens, Similar to RIKEN cDNA 23108.14E−052.18434260AF121856Hs. 284291sorting nexin 64.52E−052.18407904W44735Hs. 9286Homo sapiens cDNA: FLJ21278 fis, clone C8.83E−042.17421077AK000061Hs. 101590hypothetical protein2.54E−022.17427120R42099Hs. 21965ESTs1.37E−032.17442129N36918Hs. 20142PNAS-127 protein4.37E−032.17444291AI598022Hs. 193989TAR DNA binding protein3.99E−032.17418416U11700Hs. 84999ATPase, Cu transporting, beta polypeptid1.79E−052.17403576C3000124: gi|12737057|ref|XP_012129.1|si5.20E−032.17446126AW085909pleckstrin homology domain interacting p6.72E−032.17424699AW206227Hs. 287727hypothetical protein FLJ231328.99E−032.17437223C15105Hs. 330716Homo sapiens cDNA FLJ14368 fis, clone HE2.02E−032.17432540AI821517Hs. 105866ESTs2.35E−022.17425266J00077Hs. 155421alpha-fetoprotein1.14E−022.17438619AB032773TU12B1-TY protein3.86E−022.17442053R35343Hs. 24968Human DNA sequence from clone RP1-233G169.74E−032.16430308BE540865Hs. 238990cyclin-dependent kinase inhibitor 1B (p24.25E−052.16434608AA805443Hs. 179909hypothetical protein FLJ229954.37E−032.16408527AL135018Hs. 33074Homo sapiens, clone IMAGE: 3606519, mRNA,4.28E−022.16410612AW502698Hs. 42400ESTs9.16E−052.16410800BE280421Hs. 94499ESTs1.25E−032.15456073AA587775Hs. 66295multi-PDZ-domain-containing protein3.76E−052.15411468AW857470gb: CM3-CT0310-180200-098-g03 CT0310 Homo1.19E−032.15411979X85134Hs. 72984retinoblastoma-binding protein 55.21E−032.15419165AW860767Hs. 118879ESTs1.14E−022.15419479AI288348Hs. 23450mitochondrial ribosomal protein S257.60E−022.15432709H17238gb: ym42f03.r1 Soares infant brain 1NIB H3.65E−032.15448705H05072Hs. 124984ESTs, Moderately similar to ALU7_HUMAN A6.51E−022.15440266AA088809Hs. 19525hypothetical protein FLJ227941.29E−042.15449881Z28444Hs. 24119Homo sapiens mRNA; cDNA DKFZp586G2222 (f5.68E−032.15457500NM_002759Hs. 274382protein kinase, interferon-inducible dou1.10E−022.15417713D42047Hs. 82432KIAA0089 protein3.66E−032.14416269AA177138Hs. 161671ESTs8.29E−032.14437370AL359567Hs. 161962Homo sapiens mRNA; cDNA DKFZp547D023 (fr2.55E−032.14413305NM_000426Hs. 323511Homo sapiens cDNA: FLJ23176 fis, clone L6.93E−022.14413012D83777Hs. 75137KIAA0193 gene product3.50E−032.14431874AW610031Hs. 323914translocase of inner mitochondrial membr9.73E−032.14421166AA305407Hs. 102308potassium inwardly-rectifying channel, s3.06E−032.13414883AA926960CDC28 protein kinase 16.41E−062.13426685R20212Hs. 28454ESTs7.31E−032.13407874AI766311Hs. 289047Homo sapiens cDNA FLJ14059 fis, clone HE4.92E−062.13423703NM_014913Hs. 131915KIAA0863 protein8.83E−042.13443804AL135352Hs. 255883ESTs, Weakly similar to I38022 hypotheti1.52E−032.13436100AA704806Hs. 143842ESTs, Weakly similar to 2004399A chromos8.32E−022.13444931AV652066Hs. 75113general transcription factor IIIA4.01E−032.13403742Target Exon8.00E−042.13407183AA358015gb: EST66864 Fetal lung III Homo sapiens3.47E−042.13430048T65054Hs. 73605ESTs1.29E−022.13445800AA126419Hs. 32944inositol polyphosphate-4-phosphatase, ty2.54E−022.13438829AA826926Hs. 204214ESTs, Weakly similar to 138022 hypotheti1.14E−022.12443189AB023179Hs. 9059KIAA0962 protein3.49E−032.12421633AF121860Hs. 106260sorting nexin 106.51E−022.12408475AA315514Hs. 47986hypothetical protein MGC109405.93E−022.12436237R11528Hs. 271968ESTs2.39E−042.12409509AL036923Hs. 322710ESTs3.74E−022.11408358D20044Hs. 12929hypothetical protein FLJ207212.91E−032.11417867AW952547Hs. 194603ESTs, Moderately similar to I38022 hypot1.68E−022.10417691AU076610Hs. 82399low density lipoprotein receptor defect1.19E−032.10439161Y15164Hs. 6483oral-facial-digital syndrome 11.84E−032.10441024AW081530Hs. 268231ESTs7.28E−032.10445817NM_003642Hs. 13340histone acetyltransferase 12.12E−032.10446783AW138343Hs. 141867ESTs9.75E−032.10449901AI674072gb: wd15h01.x1 Soares_NFL_T2.95E−052.10GBC_S1 Homo s456373BE247706Hs. 89751membrane-spanning 4-domains, subfamily A9.78E−042.10451582AI963026Hs. 289958ESTs, Weakly similar to putative p150 [H1.24E−022.10432106N58323Hs. 269098ESTs, Weakly similar to RETROVIRUS-RELAT2.43E−032.10426295AW367283zinc finger protein 6 (CMPX1)1.30E−042.09426272AW450671Hs. 189284ESTs4.52E−052.09444647H14718Hs. 11506Human clone 23589 mRNA sequence6.93E−022.09458476AA336878Hs. 9842Human DNA sequence from clone RP4-788L202.92E−032.09428220BE183533Hs. 347128Human DNA sequence from clone 34B21 on c6.84E−062.09446103U90918Hs. 13804hypothetical protein dJ462O23.24.76E−032.09431742NM_016652Hs. 268281crooked neck protein (cm)1.10E−022.09412760AW379030Hs. 41324ESTs3.99E−052.08450203AF097994Hs. 301528L-kynurenine/alpha-aminoadipate aminotra8.57E−022.08405086NM_006662*: Homo sapiens Snf2-related CBP1.82E−022.08429567R35606Hs. 326800Human EST clone 53125 mariner transposon2.36E−022.08418459R85436Hs. 268814ESTs2.21E−032.07424737BE301883Hs. 152707glioblastoma amplified sequence4.77E−042.07454038X06374Hs. 37040platelet-derived growth factor alpha pol1.75E−022.07427468AB036829Hs. 178347SKIP for skeletal muscle and kidney enri1.25E−032.07412748BE083158Hs. 10862Homo sapiens cDNA: FLJ23313 fis, clone H4.56E−032.07455705AW161061ESTs, Weakly similar to zinc finger prot2.36E−072.07421483NM_003388Hs. 104717hypothetical protein MGC113331.19E−022.06433713AW976511Hs. 112592ESTs2.83E−022.06457171AA433896Hs. 201634ESTs1.29E−022.06433201AB040896Hs. 21104KIAA1463 protein7.30E−032.06432841M93425Hs. 62protein tyrosine phosphatase, non-recept2.83E−022.06437469AW753112Hs. 15514hypothetical protein MGC32602.92E−032.06402929ENSP00000243914*: DJ579F20.2 (similar to4.00E−032.06408246N55669Hs. 333823mitochondrial ribosomal protein L134.50E−052.06410582AW867197Hs. 337561hypothetical protein FLJ216161.15E−052.05411495AP000693Hs. 70359KIAA0136 protein5.38E−022.05412059AA317962Hs. 249721ESTs, Moderately similar to PC4259 ferri6.72E−022.05414548AW937036Hs. 183506hypothetical protein FLJ142133.29E−042.05433735AA608955Hs. 109653ESTs3.14E−022.05441872BE567100Hs. 154938hypothetical protein MDS0252.04E−052.05448920AW408009Hs. 22580alkylglycerone phosphate synthase5.92E−032.05448980AL137527Hs. 289038hypothetical protein MGC41265.43E−032.05453078AF053551Hs. 31584metaxin 27.28E−032.05453574AI767947Hs. 50841ESTs2.63E−022.05410664NM_006033Hs. 65370lipase, endothelial7.31E−032.05436856AI469355Hs. 127310ESTs2.87E−062.05408483AA464836Hs. 291079ESTs, Weakly similar to T27173 hypotheti4.24E−052.05444775AI040384Hs. 19102ESTs, Weakly similar to organic anion tr6.08E−052.04423996AF205071Hs. 137425solute carrier family 21 (organic anion7.84E−022.04451334AI122691Hs. 13268ESTs9.76E−042.04418504BE159718Hs. 85335Homo sapiens mRNA; cDNA DKFZp564D1462 (f8.16E−052.04457830BE147896Hs. 14662ESTs7.61E−032.04408194AA601038Hs. 191797ESTs, Weakly similar to S65657 alpha-1C-4.72E−022.04428706AA432030Hs. 265827interferon, alpha-inducible protein (clo2.68E−062.04435841R28522Hs. 186937ESTs8.82E−042.03429586T73510Hs. 209153angiopoietin-like 31.29E−042.03453173AB007902Hs. 32168KIAA0442 protein5.73E−052.03415662AW972481Hs. 170610ESTs, Highly similar to G01887 MEK kinas2.02E−042.03407879AA045464Hs. 6557zinc finger protein 1611.89E−022.02417303NM_001698Hs. 81886AU RNA-binding protein/enoyl-Coenzyme A2.02E−032.02429857AF089897Hs. 294030topoisomerase-related function protein 48.03E−052.02432886BE159028Hs. 279704chromatin accessibility complex 17.38E−022.02432960AW150945Hs. 8739ESTs1.51E−022.02436797AA731491Hs. 334477hypothetical protein MGC148793.73E−052.02439564W77911Hs. 110006ESTs5.56E−022.02449845AW971183Hs. 6019DnaJ (Hsp40) homolog, subfamily C, membe6.20E−042.02419426AI214690Hs. 346257aldo-keto reductase family 1, member B13.19E−032.02424571BE379766polymerase (RNA) II (DNA directed) polyp1.24E−062.02441965AA972712Hs. 269737ESTs4.77E−032.02421456AW579842Hs. 104557hypothetical protein FLJ106971.96E−022.02408395BE072425Hs. 44579hypothetical protein FLJ201995.59E−042.02427561AI123333Hs. 134191ESTs2.67E−062.02411678AI907114Hs. 71465squalene epoxidase3.03E−022.02448873NM_003677Hs. 22393density-regulated protein1.24E−022.02420747BE294407Hs. 99910phosphofructokinase, platelet9.75E−032.02430213AW993446Hs. 235445hypothetical protein FLJ213134.42E−022.02417971Y08991Hs. 83050phosphoinositide-3-kinase, regulatory su1.19E−022.01424247X14008Hs. 234734lysozyme (renal amyloidosis)3.06E−032.01404240NM_018950*: Homo sapiens major histocompat2.45E−052.01400906C18000324: gi|12229928|sp|Q9PTW9|PSA7_CAR6.69E−032.01422431AI769410Hs. 221461ESTs4.37E−032.01444654AV650572Hs. 23440KIAA1105 protein1.59E−032.01418248NM_005000Hs. 83916NM_005000*: Homo sapiens NADH dehydrogena8.07E−022.01437830AB020658Hs. 5867KIAA0851 protein; suppressor of actin 16.71E−032.01438023AF204883Hs. 6048FEM-1 (C. elegans) homolog b2.43E−032.01448770AA326683Hs. 21992likely ortholog of mouse variant polyade8.37E−042.00416430H60487Hs. 159440bile acid Coenzyme A: amino acid N-acylt1.52E−032.00421360AA297012Hs. 103839erythrocyte membrane protein band 4.1-li2.02E−032.00418838AW385224Hs. 35198ectonucleotide pyrophosphatase/phosphodi5.60E−062.00425145BE242802Hs. 154797KIAA0090 protein3.19E−032.00437672AW748265Hs. 5741flavohemoprotein b5?1.19E−032.00439898AW505514Hs. 209561KIAA1715 protein3.19E−032.00444743AA045648Hs. 301957nudix (nucleoside diphosphate linked moi8.32E−022.00445790AV655170Hs. 49015chromosome 21 open reading frame 352.55E−032.00451141AW772713Hs. 247186ESTs2.04E−022.00454105NM_001259Hs. 38481cyclin-dependent kinase 63.82E−032.00458389H70284Hs. 160152ESTs, Weakly similar to FPHU alpha-fetop4.50E−052.00Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of Hep C+ Liver over Trimean of Hep C− liver Ratio


[0355]

20







TABLE 7B









CAT



Pkey
Number
Accession







442048
750422_1
AW340495 AI984319 AA974603


451752
10408_5
AB032997 AI141678 AW978722 BE467119 AI761408 BF727385 AW237035




AI934521 BF436248 AI479668 Z40632 AA832081 AW295901




BF057835 BE465977 AI621269 BE465983 BF756369 N74056 AI817896 AA716567 AA934774




H62600 H09497 BF943762 BE395335




BE883333


421057
265006_1
BE222349 AA830545 BF224127 H99396 N81017 N81016 AI525205 T58283


407644
27910_1
D16815 AL563603 BG399756 AI935028 N41813 L31785 AL529953 AA428473




AA401262 BF802576 AA373868 BE886120 BM479352 T28309




N57167 BI551531 BG037160


444314
1027984_1
AW749625 AW749626 AW749644 AI140497


432954
2159612_1
AI076345 AI887648 AA572691


433586
32908_1
BC011194 AW517087 AA601054 T85512


419175
35068_1
AB018322 BC012480 BI524873 AW665554 AI934469 AI479916 BF096179 BF096162




BF096132 AA744972 AI951988 AI858339 BE076331




AA886998 AI570585 AI916688 AI678811 AI693109 AI308135 AA669046 AA961064




AI018062 H80618 BE221942 R52609 AI915164 AA365626




Z44671 BI052776 BF882486 BG286184 AI589558 AA931663 AA534979 AI275392




AI273455 R52553 AA829920 H80652 AA360728 F10618




AW953666 AW176773 H85527 AA765570 AA081927 BF093262 BG743753




AL037576 AA534314 BE814964 BE973713 N49493 BE006634




BE006630 AW270037 AA234765 AI334004 BF057179 AI857450 AI341191




AI434143 AI917449 AW517207 AA255424 AW008334 AA847572




AA994211 AA861901 AA581873 AI580157 AI364363 AW242357 AW235291




N55645 AA319869 R36911 AA256551 AW044188 AI203159




N49403 F02090 AI187299 AI609644 Z40516 AW952314


400247
2764_1
BC022339 BC009610 BC010537 X79805 NM_006713 U12979 BM467814 BM450743




AU132951 AU137129 BG493425 AV758819 BG708412




BG705885 BG702217 AV716638 BG777009 BI545689 BI552153 BM476712




BG770858 BG527656 BG528277 BG391388 AV716861 BI602926




BG290073 BI667399 BM451469 BI667173 BI602139 BG532171 BI669216




BI544727 BG721852 AV716503 AV701327 BM090738 BI492000




AI308856 BI544904 AL599813 AV715829 AV716505 AV714587 AV717902




BF668072 AV716385 BI461927 BM090954 AV717826 BG503676




AV647719 BG501392 BG428433 BE895629 BM313117 AW021050 BG435032




BM152910 AA313503 AA872377 BG574714 AV712054




AV732696 AA252476 AV712759 AL599643 BE790872 BG654930 W73337




AW675377 AV760376 AV725139 AV716379 AA887165 BE830003




AW023796 AL599291 AI902948 BG944042 F00781 AA352483 BG217897




N33888 AW581924 BG654730 D31410 AA353088 D31288




AA295029 H95170 BE935104 AU139980 BG772963 BG776470 BG532512




BG105449 BI545421 AV715456 AW386083 BG699714 AL535832




AL514940 BG190861 BG210593 AW999254 H95138 AA353863 BE764809




N50375 BE091363 BG701255 BI860846 BI832485 BG168150




BG028647 BE546301 BG900321 BI909737 BG702363 BG614141 BG611137




BG700121 BF031492 N85802 AV715940 N51590 BG993478




BE172016 AW893622


436024
138548_1
AI800041 AA703553 AA984529


443547
137089_2
AV645808 AA701657 AW271273 AI796734 AI472316 AI017531 AI061178 BF109096




AA548964 N83805 AA131648 AA156589 BE708349




AW952494 D30877 AV684717 Z24837 F00167 BF576150 T63841 R78995 N87474


416475
1972665_1
R02750 H58072 T70298 BF367306 R02749 T80873


408096
9330_1
U61981 NM_002439 J04810 BC004177 BC011817 BC017273 BG876463




BG876469 BG876468 NM_000791 BC009634 BE741138 AI830697




AW572941 AA489055 AA463881 AI186480 AI803332 AA129465 AA749344 AW572255




AA447680 AI184392 H94631 BC000192 BC003584




J00140 V00507 AL525560 BG532440 AU130196 AU130635 BG699143 BE295309




BG771877 BG497327 AV714645 BE397236 BI458721




AU127142 BE252613 AW575796 BG328723 BE250809 BI759776 BM051687 AL040147




AA314334 BE780925 AU099092 T29009 BE250162




AU139133 AA421716 H99382 BG188773 BE514324 BG199292 BG217128 BG188772




BG202122 N44579 BE250719 AW473270 AA382889




AU157895 BF907195 J00146 BM475776 AA974401 BF514204 BE743689 AW993728




AW364498 BE514508 BG195205 AW069265 BF881506




BF928376 BE874450 AI909030 AW051136 AL514516 AW970133 AL514515 AA701106




AA516401 AA578546 BF792184 BE566555


442679
31783_3
BG621493 BI056706 BG496376 R53718 W65356 R79357 BG434247




AA357769 AW978686 BG573200 BF132113 BF086709 AA366938




D79234 BG494628 AA156754 BG434311 AW978683 AW273417 BM054662 AI799886




AI433351 AI160798 AI433742 BF056186 AI281606




AW015046 AI439585 AI245530 AI078267 AA807170 AA837395 W61252 AA831085




AA287371 AW768354 AA890606 AI302539 AI708575




AI673031 AI242260 AW514069 AA283958 AA825452 AI371234 AA425696 AA453422




AA827697 R23653 D20240 AA772517 H13802 R66972




R79360 R27351 F03379 AA031952 N69504 R33143 R79358 R39136 R38800




R15089 R52937 R37502 H01021 R33634 R46551 Z40404




BG291052 BG570357 AW391046 BG496872 H23558


418876
121279_1
AA740616 AA654854 AA229923


434210
54921_1
AK057015 AI026834 BE857936 AA149091 AI742972 AW439172 AI253168




AA255613 BF513175 AI005006 T03406 AW338149 AA836442




AA420530 R88566 AI611672 AA433916 AA442855 BF063008 AA812568 AI889706




AA715313 AA768539 AA767620 AA665471 AA404380




AA665612 BF056442 AA706388 AI650676 AA627448 AI141769 H78227 AW901852




H78221 BE701982 BF689273 AA397464 N33072 R60218




AW968247 H14833 AA768305 AA043348 R56470 BF739832 R51827 AI474963




BG494574 AA149090 BF238154 AI802210 BE000129




BF734513 R41964 H21055 R85253 R17705 R40844 BF790218 BG388356




BF003037 AA703138 AA377348 W24822


400133
2368_1
NM_005648 BC013809 L34587 BF103775 BG702618 BG716553




BI667090 BG505863 BF983483 BG718195 BI857891 BG501016 BM043599




AL521812 BG705730 BI495545 BI495546 BF112248 BM023182 BM023123 AI075173 AW051799




BF058224 BI324885 BF436008 AA398446




BG822375 BM019558 BM023382 BG164174 N56909 BI467064 BM023464 AI207475




BM311415 BG758430 BG758807 AI934826 N90351




BG422026 BE910312 AI027778 AI081950 AI360890 BM009115 AI191829 BG759697




AI138728 AA399403 AI355589 AI336427 AA868702




AA393660 AA025127 BG027630 AA962774 AA631224 BG940967 BE791087 AA573315




W81685 AA393525 BG944103 AI339125 AI149864




AA977655 N90314 BE612839 BG491847 AI129091 AA461234 AA781198 AA759256




AA888954 AA975844 AI184099 AI018025 AA398363




AI003331 AI193380 AA626020 AI244476 AI601114 AW135664 AI206607 AW263599




AA813219 AI684453 AA878626 AA772222 AI085496




AI630226 BG940966 AI022010 AA770649 AA887624 AA491739 AA974295 BG530040




AA037091 AA019912 BI160457 H64512 BG503896


413509
1518543_1
BE145433 BE145419


429588
1396089_1
AI092511 AI080271 AA455177 AI381859 AI381721


407347
810943_1
T23514 AI655785


439195
21979_1
AF086037 H89360 H89546


413007
1343540_1
BE046662 BE046697 BE046655


437834
294580_1
BG110129 AW749287 BE535498 AW749299 AW749293 AW749302 AW749298




AW749291 AW749294 AW749289 AW749288 AW749296




AA769294 AW749297 AW749295 AW749292 BE002573


427384
1367813_1
AA401778 R92652 T82854


432600
114582_1
AW973464 AI821831 AI821085 AA640756 AA657438 AA554802 AA650339


411605
10026_3
BG256892 H10532 N46614 R52610 AW977696 BM460488 W56819 BI042183 BG977498




BE767451 BF870009 BG477472 R61137 R14274




R20259 R09686 BI838226 BF034269 AA429173 BE741829 AW867495 AI123683




AW006831 BE831162 AW452753 AV742717 W86152




BF115102 AI633815 BF921562 AA094230 BE092587 W86151 AA526153 AI672156




BF914496 R12579 BF852352 AA699780 T57386




BF903022 R09933 AA678298


454067
98108_1
AI809849 AW241782 AA041455


456034
685586_1
AA136653 AA136656 AW450979 AA984358 AA809054 AW238038 AA492073 BE168945


432676
3503_22
AI187366 AA618478 AA558869


428342
6712_1
AK056315 AI015524 AA724079 BI713619 AI377728 AW293682 AI928140 AI092404




AI085630 AA731340 BM469629 AW968804 AA425658




AA769094 BF446026 AW118719 AI332765 AW500888 AW576556 AI859571




AW499664 AW614573 AW629495 AW505314 W74704 AI356361




AI923640 AW070509 AI521500 AL042095 AA609309 AA761319 AI381489 H45700




AA761333 AW265424 AA909524 AA635311 AA649040




AI392620 Z40708 AI985564 AW263513 AA913892 AI693486 AW263502 AI806164




AW291137 BI061872 BI059498 AA134476 AW084888




AA036967 AW370823 T55263 BI002756 AA489664 BF827261 W74741 BF963166


449001
1968002_1
AI654836 AI619957 H51659 R99472 R99473


411656
1095889_1
AW855650 AW855576 AW855577 AW855642 AW855578 AW855621 BG950916




BG950923 AW855619 AW855624


434987
121985_1
AW975114 AI096634 AI767001 AA658364 AW517542


434280
1474904_1
BE005398 AA628622 AA994155


414405
112689_1
AL047596 AA393792 AI670731 AI037957 AW874364 AI038137 N62286 AI241379 BE501096




AW090696 AI927369 AI669226 AI369437




AI371075 AW612409 AI686711 AI183289 AA477717 AI076122 AA635190 AA700984




AA781508 D81020 BF575223 AI356183 D79312




AI375558 H61111 BG283489 BE090666 BE090664 BE090662 H26545


407218
34845_3
AK026094 AK024519 BG697329 BI768179 BG680257




BE275725 BF945273 AW674728 H62658 BG951138 AA326011 AW993688 W67819




BI036861 AA524981 N28558 AW799454 BG286696 BG434856 AA317171 BE548299




BF987870 H12577 H87965 BE867572 BG107813




BE747295 AL118999 T95439 AA363896 H16012 H27146 H41959 R63045 N49563




AA032167 BI917617 H02466 AA207162 AA081975




BG749301 T11901 AA091553 BG945206 AA095473 BM172375


407992
101407_1
AI458141 AI743200 AW418811


452194
90339_1
AI694413 AW994700 AI912946 N73548 AI082035 AW271652 W24189 W24182 AI719718




AA024658 AW810120 AW015394 T79755 AA988043




AI709339


427213
507972_1
AW007211 BE467259 AA960991 AA399252


433075
78_6
X98248 NM_002959 AU127082 AU143346 BE327147 AI168442 AA426361 BF056336




AA418378 AI470560 AI365213 BI032745 BI032986




AA969895 AA233278 AW291971 AA418326 AI198417 AI337018 BI032747 AA888000




AU099083 AU129681 AL036861 AA418275 BF887436




BF767448 AA232975 BI094065 BI859449 AL079651 BF877391 AW902319 BF878798




BG281450 AA418268 BG770672 BE890328 BI520437




BE387505 AW375004 BI020046 BI033747 BF800905 BF869732 N99710 BF905459




BE715637 BE746496 BF918537 BF751392 BF751390




BF369123 BG949840 AA984366 H85743 AW593418 AI990196 T92267 AA018359




H38111 BM050097 BF692315 AW805907 AI547305




AA631091 BF845219 BG949806 T92310 BE277220


418304
1093209_1
BE883520 BI057842 AA215702 AA215703 AA368006 BE006876 BE066555


438021
45849_1
AY043361 NM_007013 AL136739 U96113 AL049041 AI750898 AA054855 BF887778




BF333173 BI061338 BC015380 BG569062 BM090890




AI769300 BE466554 AI091728 AI800660 AA832035 AI342285 AI750899 H66486




AA455942 H20821 AI187877 AI417440 AW198099 AI245158




T91227 AI373068 AW194829 AA680229 BG291204 AW885601 BF380168 D82380




D82098 BF885552 AL050082 BE552267 AI458088




AW137654 BM014715 AA418921 AI159868 AA845398 AI743920 AI159888




AI653531 AA843952 AI799752 AI360957 R67562 BF445478




AA854844 AA552895 C21152 BE614563 BI260650 AU155187 AW169673 AI915801 N29619




AA435618 AI361252 AI424627 AI219018 R67514




AA548141 AI246669 AA156867 R67561 R67513 AW263860 AA089478 AV653790




AA354846 BI560015 AW794547 R52020 H18923 R67555




AI302490 AL582101 AI871884 AW029104 AI582326 AV688960 AL040820




AI804339 T57931 R67554 AA418232 AA393281 BE076206




AW189435 AW979344 AW953494 BF056797 AA310720 N64062 W92065 AI761704




AA418824 H89156 H88930 W92048 AV733096 AW007773




AI745541 BE504125 AW243111 AI201009 AI187909 R44411 AI795988




BF222383 R29593 AA156952 BF029856


432689
11004_5
AL563022 BC011883 AI625937 BE302243 AI240793 AI886651




AL134289 AA877735 AI284399 H80252 AI753853 AA564328 AI075230




AA657859 AI269462 F09349 AA653028 T71751 T71812 R58128 AI890218 T71659


410099
16732_1
AK055674 AW965247 AV751598 AA290926 R53043 AA331387 AK056148 BI917678 BG819395




BG911971 BG820167 AI174254 AA348720




AA364503 BG714279 AW893230 AA081774 H24222 AV727176 BF875715 AA081630




BE000834 AA334880 AL563737 BG029709 W52882




AI439658 BE551237 AA283724 BF109530 AI457096 AI805992 BE467736 AA693467




AI697593 AI887863 AI167419 AW901980 AW901768




BE702179 AA484549 T23811 BE327043 AA716027 AA917004 AA167714 BF339675




AA084618 AI418634 T31586 AA436630 AI366472




AA706191 AI422304 AI204899 AI041169 AA211402 AW827081 AA788593 T32736




AI767935 AA747914 T03534 AW959843 AL119527




BE327037 AW901982 AW993370 AW901977 AW902071 W60090 N79906 D52685 T07735




BE702069 BE702172 T08671 BE767121 BE767117




BE767113


433891
647290_1
AW182329 AA613792 T05304 AW858385


425757
1228540_1
AW963347 AA371863 AA363171


400281
9758_4
BE564506 Z47727 BF028489 BI597545 AA152273 AA730753




W07504 M406507 AA316220 AA424683 N35844 N72473 AA442109 W01788




AA747605 AA235894 N41438 AA382786 AI906934 AI906935 BF091197 N85572 N75678




AV758098 BE719745 BE719744 BE719735


413645
1234345_1
AA130992 AW969537 AA503835


423886
887218_1
AW950497 AA332098 AW950499


408731
11725_2
AF305826 BE350971 AI765355 AW172600 AI310231 BM271766 AI547292 AW612019




AI674617 AW138666 AI147629 AI147620 BF857810




BF886300 BF885952 BF886303 BF885956 BG565497 BE670834 AA114025 BF886396 BF886928 AV750861 D62864


443126
1057340_1
AI033503 AW801770 AW801782


448219
22785_8
AW577769 BE076308 T98501 AW577775


418259
133853_1
BM310925 AA426110 BM310629 BF434286 AW015091 BF475996 AW118867




BE675186 AI688568 AI453594 AW590589 AI652425 AI827969




BF056946 AI802866 AI393380 AI476224 AW590639 AW136271 AI458252




AI524726 AA843768 AA782158 AI336058 AI097532 AW451563




AA459408 AA459633 AA418444 W23607 BG940150 AI493445 AW054729 AI221929 AI868744




AA215405 AA766713 AA621546 BF928317




BE464132 AI990909 AW271459 AI262061 AA215404 N74332 BG940151 BG952261 AA972115




W96315 AA689586 R69057 BF766886




BE769254 W05240


415023
37164_1
BG763540 BI115604 BG325282 AY007096 BE048206 BE048060 AA356949




BG469451 BE267760 AI683752 AI702004 BE247172 T47611




T47612 BE780300 AA932146 AA652369 AI784281 BM055020 BM023299 AI382709




AA159351 BI262171 AI863355 AI674922 AI754389




AW295190 BE673083 AW469497 AI949042 AW131720 AI990060 AI623178 BE673420




AI863364 AA620354 BF431793 AI056058 AI056059




BI258269 BI823911 BG482172 BI261556 BI519838


412634
131633_1
U55984 AA195883 AA447957 AA393452 AA384799 AW958952 W68044




AA197345 AI241933 R59505 W67965 AA826474 AI336006 AA931733




AW025414 AI769180 AI355738 AI860952 AA907417 AW408679 AA453139 AA938346 AI279697




AA121899 AA400768 AI559827 AA448889




N62400 AW236656 AA904207 W79380 R59504


419970
13569_1
AK055270 BE348291 AI190289 AW612022 AI269506 AI266578




AI269675 AW271406 BE879851 BF574163 BI497126 AW903775 BI917368




AW150900 BF244813 H79201


420985
455_7
X94703 NM_004249 AL521205 BF886672 N46403 T87420 Z36855 BF934259




BI549507 BG899191 BI517479 BI818431 H39666


456984
29289_2
W28684 AW959164 AI909150 AW750651 BF055016 AW750639 AI909163 AA358374




AV753402 AW968411 BF196253 AI697716 AI656043




AW138212 AU146192 AI582306 AI814242 BF036992 AA723154 AW301605 AI378151




AI680949 AL589221 AW304035 AA984657 AI290310




AI668884 BG149396 AI537796 AA995333 AA402863 AA416859 AI300148 AA889348




BE674396 AA740711 AI041113 AA723177 AW976742




BF951876 AI909164 AI909181 H08832 R80981 W28685




W28701 H18426 R80781 AW842470


423828
886732_1
AW962569 AA331536 AA331754 AW962568


411777
1104614_1
BE067593 H49900 BF331057 BF331045 BF331063 BE067552 BF331011




BE067819 BF331039 BE067694 AW861997 BF331052 BF331005 BE067800 BE067714


421828
207_22
AW891965 AW604749 BE080872 R15559 BE177623 AW883520 AW945343




AI246167 T07082 AW805679 W96278 AA135796 W32615




AW995418 AW801688 BE003837 AW801621 AW385721 AW385742 AW385714 AW604757 W87409




AW604738 AW385757 AW580796




AW801247 BE003239 BE003183 AA847112 AW580975 AW604760 AW385727 BE164590




BE003090 AW362791 AW604759 AW866589




AW604758 N44337 AI378548 AW890438 AA077172 AI288683 AA229639 AA091945




AW945454 AA063629 AA702504 AW861938 AW894816




AW580841 AA094372 T06399 AW885686 BE244086 BE005035 AW861913 AA551773




AW858460 AW370926 AW754352 AW889695




AW384408 AI907428 BE067491 AW861939 AA248197 AW381373 AW177325




AW806879 AA935217 BE067498 BE083742 BE067470




AW894935 BE082529 AI248811 BE179917 BE002200 AW607506 AW392889 AW894560




AW381360 AI904206 AW863533 C00609 AW381372




BE082530 AW898120 BE075323 AW392799 AW601420 AI695314 BE083790 AW858568




AW945550 BE177153 AW970506 BE350419




AI906919 AW360794 AI906917 AW885979 AW794240 AW945566 AI688683 AI688694




AW009660 AW601421 AW360793 BE066524 BE083901




AW369847 AW381871 AW935435 AW664582 AW877775 AW838449 BE180466 AW858501




BE180464 AI371163 AA778231 AI174991




BE011720 AW877776 AW877800 AW877795 T19900 AW866365 AW898099 BE011715




BE167842 BE011718 BE011724 AW363639




AW878658 AW878662 AW894887 BE082356 AW389211 AW804286 AW610312 AI904717




AW610318 AW996909 AW610296 AW901923




AW880003 AI762171 AW062582 AW368713 AW062593 AW176663 AW842064 AW842089




AW842095 AI243049 AW902074 AW062592




AW176664 AW751692 BE087703 AI907439 BE009686 BE172115 BE077030 AW608556




AW835577 AI909628 BE077029 AW176241




BE077552 BE160370 BE160288 AW835656 AW606765 AW606770 AW835678 AW606758




AW606778 AI907484 BE172821 AW606768




AW999517 AW844165 BE171738 AW751683 AW610493 BE177484 BE177487 AA090510




AW844117 BE173367 AW999878 AI124870




BE163472 AW841823 AW379762 AW893297 AI290296 BE089132 AA610287 AW176676




AW607622 BE172639 AW893232 AA329629




BE089008 BE178350 BE178214 BE063291 AW820236 AW999653 BE089486 BE173126




BE171775 BE185787 AA558280 AI174840 AW999112




BE218391 BE172734 BE178021 BE172738 BE173324 AW603494 AL036722 R38192




R60905 H53721 H41052 AL037917 R37795 AW998972




AA767189 AW044272 H50689 AA768399 AA767764 AI087888 H44202 BE222792




N90597 W81396 N90615 AI935353 BE501168 F10945




AW118215 AI970480 AI627641 AW236081 AA574090 AI627652 AI681913 AI759983




N69591 N69276 BE467722 AW392780 BE172467 H92861




AI524921 F02989 Z39328 F02705 F01414 T88678 AI215165 H87220 AW374781


452279
11990_1
AF392454 AK023074 AI884890 AI814455 AW966220 BF736545 AA026021 AA286843




AA251918 BG197710 AA026294 AA337356 BC010422




AK023226 NM_022776 BM459496 AA769310 AI826460 AU153650 AU160375 AW166211 AW292992




BF433538 AI823888 AI684798 AI655985




AW770982 AI400454 AI276257 AA639510 AI689818 AW772604 AA807639 AU130298




AU132028 BF900889 BF904822 AY007102 AU143256




BG621460 AA829630 AI864665 AI084922 AA025234 AI360060 AA766554 AA026295




AA825817 AA251762 BE180751 BM464530 AV715833




AA779447 AI452519 AW418525 AA435643 D25894 AA435651 AA286844 N64369




AI702262 BG288063 BE170545 BM466232 BE299160




AA169573 AL567428 BF217285 BE967276


400189
2140_1
Y08200 NM_004581 BC003093 BE733834 BI753321 BG773890




BF091906 BI917541 AI023762 AA587230 BF435086 AI264262 AI687392




AI810536 AW589886 AI244419 AA749261 AA535435 AW205689 AI765770 AI765431




C02465 AW305347 AI818456 AA322111 AW381845




AW381829 AV749407 AA811636 AU159893 AA603065 AA652542 AI468678 R49616




AW381863 BE389867 BE182387 BF087771 AA527551




AA134051 AA831504 AA134052 AI871759 AW089048 BI913532 AA367709 BG828155 BF093014


442961
60316_2
BE966247 BE220885 BE467384 BE350135 BE672094 AI811582 AW665254




AA772731 AI283601 AA417067 AW197746 AI868357 AI792143




AA931120 AI758506 AA843761 BE737582 AW379586 N38812 BG567321 H13257


422150
782_1
BI086421 BF059136 AW003898 BF446659 AI632891 AI628067 AI703179




AI961149 BF111022 AW614154 BE674215 AA687350 AA779426




BF591963 AW243344 AI356530 AI492508 AI694049 AI090422 AA465307 AI273387 BE674625




AW271971 AA969153 AW468593 AA984014




AI817491 AA970258 AI914450 AI018697 AW577591 AW577616 AA382101 AW954455




AI867266 AI707995 AI337384 BF208406 BF037100




BF223433 BF195517 BE673984 BF224124 BE813387 BG036579 BI553906 AA304995




AW361269 AW754160 AW361276 AW361271 AI867118




AW805555 AW361284 AW954458 AW958551 BG681507 H79011 AW205696 AW134957




AA747667 AW753296 BF939060 AW958549




BF910827 BG573750 BG168639


436262
2276_7
BG028838 AL597498 AW938817 AA707425 BE089516 BE175202


418733
18099_4
BM473699 N33854 N35083 BE090367 AI306129 AA911920 AA633160 AI302415 AA609954




AI365203 AA911919 AW995271 AA234587




BF996091 AW956344 AW389533 R60133


437151
282041_1
AA745618 AW606658 AA745616 AW805449 BF897789


421272
64950_1
BG819964 R87567 BF062036 BF062044 AW014470 BG057316 AI810506 BE466071 R88291




AA704157 C15898 C15173 AA286825 BF594141




R84605 H85515


430068
1177709_2
AA947566


432474
1237469_1
AW973273 AA584042 AA548798


446851
9025_1
AL530311 AI929658 BE504156 AW160973 AW007332 BE327718 AI268061 BE219811




AW162577 AW139586 AI142112 AI929817 BE348817




AI281962 AI694916 AI694425 AA476502 AA911355 AI867757 AL522996 AK025716 BI966713




AI823741 BF435119 AI740654 AI377656




AI380387 AW612765 AI190300 AI080728 AI425090 AA927634 AI911024 AA826114 AA693577




AI003964 AA680381 AI203302 AI004628




N75950 AI497985 AI918293 AW168793 AA909369 AA884574 AI191792 AI868413 AI458050




AA233857 BM462189 W72450 BG775793




AF064843 AI458158 AA568445 AI802171 AA604222 AI393739 BE044639 AI351150 R43836




AL523063 AW960720 AA621125 AA587562




AA810864 T86692 AA007682 AA055564 AL523983 AA007681 N39693 W04974 AA449174




T86786 W76299 R54146


426221
MH1660_70
AF186377 U32581 AA776981 AW473826 AU127861 N24261 W31964 BE702576 BM455665




BF371317 BF371314 BF371305 BF371302


441969
2681178_1
AI733449 AI733386 AA972780 AA988876 AI791798 AI791748


459436
880261_1
AI908449 AA323121


425284
3834_5
BM476120 BE672181 AI697653 AA938187 AI280879 AW340123 AI912727 AI081775




AI089556 AI191349 AI871604 AI631607 AI890800




AI701917 AW771624 AA663041 AI991576 AI160622 AA771763 BE089784 BE089788 AI222942 AW418516




AA329211 AI095736 BE550294




AA738345 BE218683 BE670548 BG149505 BF061776 D19821 BE005786 BE178892




BE005728 BF841237 BE005648 R27634


411617
11546_6
BF037031 AV752097 AL602446 AI004475 AA312353 N94870 N28394 AA179069




BF746111 AA351029 AA096257 AA247994 BM313163




AW364986 R25275 AA837053 AA191277 AA809755 AA094345 BM152038




BF514649 BM151933 BE769272


416048
1904153_1
H16413 H16268 H19416 Z43074


414404
19538_5
BG036308 AW813969 AW579686 BE147476 AW813871 BE147474 BE147589




BE147582 AA767716 AW813960 AW813958 BE147583




AW813608 AW813612 AW813965 AW813954 BE706154 BF843546 AW813870 BE147801




AW813962 R80512 BG681408 AA344564




AW370224 BG614838 AW582118 AW582114 AW370227 W16712 BF209670 BG117739




BE762802 BE087964 BE888647 R89145 BF342601




BI752591 BG435038 AA166732 N79515 BF541709 N79567 BG503029


437838
2512601_1
AI308202 AI307229 AA769348


434384
132928_1
M631910 AI928421 AA687629


446830
41421_1
BC020595 BI488430 BG168023 BE179030 AW294203 BF849776 AA459064 AI917452




AW403072 W27419 BF914568 BF798468 AW370558




T35055 AW370623 AA399232 AA214221 AW802987 BF902228 AW370622 BF819597




AW370567 BF914313 AW954040 BF060706 AA194237




T25074 C01285 BI489433


447657
2957064_1
AI953011 AI953026 AI936839 AI418034


408138
14592_2
AW374043 BG568336 AW374058 AW961372 AA328028 BF438186 AI268678 AV724415




BG029720 AA725816 AI926580 BM310209 AA968470




BF430989 AI185775 AW002091 AI969941 AI718705 AI360440 AW008856 AA862294 AA625752




AI610753 AA471020 AA723203 AL044614




D80637 H77377 AA745928 AA743114 W25004 AI127139 AA953939 AA908426 AI800072 AI417080




AW874111 AI439293 AI370639 AI277179




AA883338 AA469058 AI200997 W94913 AA047544 W91966 W69102 W84439




W52870 W67288 W69103 H98077 AA111874 AI913850




AA535740 N92824 AA973639 W68358 BE170126 T81345 N50135 AI567418 W67220 BF437728


414279
5766_2
BG430995 R53271 Z33587 BE073129 BE073137 R52586 AA137263




BG031848 AI983837 AI434776 AI767302 AW236107 AI676204 AI420077




AA282786 AI498342 BM310542 BM310847 AI089287 AA398984 AI129279 H79114




BF431053 N53529 AI741845 AI333439 AI674468




AA137264 AI624731 AA399623 AI968243 AI863637 AW769997 AA618148 AI220925




BI492628 R52535 AI474904 H72893 D51042 AI744688




AW021691 N38931 N24944 AI537404 AW242437 H99461 Z41183 R52617 BF448803 AI979148




R44190 R45431 BG436113 AF236691 H72493




AA482849 BF219145 AA625451 BM312732 AA282874 N33821 AW970080 BE780127 R23405 R25093


416272
3292291_1
AA178882 AA178897 AA179898


425303
1223924_1
AW958427 AA354785 AA354792


438980
917280_1
AW502384 AA828822 AI982587


452480
3144986_1
AI903574 AI903572 AI903526 AI903571


456721
17316_2
AK027110 AI823404 AI311783 AA552514 AI936370 BF435170 AW468427




AA533356 AA779031 AA318991 AA614088 BF868935 R67736




BG007848 AA720986


423983
888204_1
AA333365 AA552870 AA333261


438141
1173217_1
AA778849 AW946871 AW946782 AW946955


438041
2523562_1
AI394551 AA812658 AA776285


416611
10454_1
BC010161 BG576118 AI708321 AI478300 BF111611 AA568308 AI984473




AI453629 BI495582 BI495581 AI983169 AI695792 AI695791




AA181902 AI376993 AI472805 W26851 AI341559 BF735125


414496
1526_1
AK058006 BF724822 W65303 AW887764 AW023806 Z25353 AW022095 AA730973




W00417 W73819 BF982096 AI927669 AW188021




AW770478 AI913512 AA604358 AI697341 AI691028 AI338392 AI079403 H97538 AI144448




AI253102 AI051402 AI335900 AI868132 N28900




H98465 AF268386 AI799915 AI819228 BE048413 AW304723 AI819923 BF223106 AA155907




AW298079 BF055272 BF446804 BF197697




W58588 BF197538 AA032180 AA992597 AW590254 AA027824 AI129369 AI131331 AI655843




AA932907 AW104493 AI150615 BF110226




AW172271 AI312659 AA057312 BE673669 AA722984 AW104985 AI129232 AI078648




AI653086 AI703481 AW515897 AI352206 N67076




AW297281 AI686162 AA029184 AI610743 AW772016 AI091778 W65401 AI687374




AI218085 AI765158 AI018002 AI653068 AI335704




AI520850 AW275228 AW275204 AI420247 AA975336 AI697042 AW182235 AA736386




AI281682 AW169698 AW263325 BE645834 AI377438




AI146706 AA613808 AA716538 BI496247 AA032248 AI698930 AI193399 N70026




H86792 AA404489 W61267 BF447230 AA910805 AA150774




AA621907 AA902526 AI827634 AW022037 BF059000 BI496246 BG577007




BG571077 AA460779 AW816890 AW816893 AW816891




AA029183 AA010295 H86850 T83320 BE160823 H12925 N40087 AA096372




BE160847 AW816892 AW816889 AW816882 AW816868




AW816941 AW816578 AW816940 AW816577 AI431628 AI828113 AA033677




AA033654 AA452704 AA317582 AA346971 BF836584 H48669




BI861605 BG925200 AA463277 H89048 AA155952 W03252 W01510 W00915 W58589




AA164519 N24017 N24622 N27149 N70109 R43771




AA010296 W84611 H98889 H88965 AW594424 AA034139 AA065223 N99696




BG981481 N94371 AA767970 W47146 N70977 H05510 W61268




T90796 AA164518 W47244 AA150883 AA034138 BF338483 F13671 H51317




W72716 N21488 AI188071 AI370541 AI754442 AA148524




AI749182 W95221 W92522 R20385


419200
9531_1
BF036043 AW190446 BG194731 AW662036 AI445021




BE937550 AW818972 AW393132 AA834685 BF112058 AV721682 H16423 AI270167




AI857345 AA937302 AW818444 BE929780 BG498678 BF155010 BI598271




BI599811 BE161728 AW578737 AW753711 AW379707 AW381918




BG506608 AW028637 AW994240 BF887392 BF790073 AW381624 AV727105




BF439618 AA443174 AI018009 N42850 AW573242 AI417258




AA463483 AI676131 AI167170 AA836627 AA443828 AW592922 AA235129




AA730278 AW439062 AW474332 BI043239 AW474342 BG708553




AW362423 BF090028 BE827256 R16550 R39478 R39479 R94368 BG540916




BM314745 AA251087 D54231 D55274 BF085805 D31589




AW966405 AW994425 D81879 BE093545 AW901107 AA383529 BI021552




R56420 N39976 AA573281 H82595 AA234955 BE093539




AW367006 BF358697 BF366318 AA663856 BE702099 BF035969 AI267384




AI267232 BE348320 AA621574 AA861212 BF083343 BF083341




AV745131 D53074 AW954476 AW954472 AA376836 AV724531 D53063 C14928




AA093287 AA062638 BG483558 BE940050 AA765954




T70171 BE938775 BE940057 D53502 AW373300 AL118798 BM128728 AA193411




AW444709 AW952455 AI887612 BF431948 BI496876




AI264159 BM128481 AI624657 AI689301 AI969467 AA861685 AA251595




AA625761 AA872090 AI826790 AA328366 BE827416 R75951




D56918 R68122 BE827384 AL118797 AI184164 AA164411 BI495332 BE858113




AI863860 H00660 T69849 AW780389 C14667 BE934995




BI018652 R92801 AA164410 H00752 AW373305 AW373299 AW373302


421297
16064_1
AB033081 AK074324 AW450283 BM128413 BE550945 BE670081 BE674137 AI298087




N30050 BF110807 N30072 AI288098 N30068




AW861931 AW858575 AI363734 AK025483 BF882045 BM128581 AW771330 BE669540 NM_016376




AB037360 AA399607 R94364 BE514643




BG684040 BG759578 T83725 AW858561 AW858524 H65293 AW754345 AK025960




BM477612 BE071291 BF087041 BG995615 BE071350




AI917153 AA436381 BE815318 AK025717 BE857148 AI741138 AW027718 BI789162




AI492263 AI690072 AI420179 BI789249 AI637804




AW957459 BF222458 AI094328 AW510893 AW295994 AI760430 BE464934 BE220458




AI042022 AI653315 BM128472 AW337972 AW515837




AI669489 AW664176 AI768730 AW271660 T16381 AI823834 AJ346113 AI242353




BF437578 AI273673 AW513498 AI797424 AI674242




AI277236 AW731756 AA373089 AW207589 AW467879 AL550999 N30075 BE883669




BF155456 AI423079 R60281 T16974 BG676892




BF927070 BI962758 BE811485 BE811591 BE811702 BE811600 BE811483 BE811533




BF927061 BG008257 BF873368 AL574815 BF946447




H70934 BF939868 BF378761 BE082381 BG984527 AA244447 BG983567 AW885571




AW293182 AW885607 AA811057 AA610310 AI434406




AA514352 H71020 BF740351 BE814815 N66648 AA737686 AI025403 AA255490




N26754 AI094233 AA629548 AA716234 BF343632




AW363633 H62663 N40757 N55959 AW858569 AW604731 N40773 N40777 T83895




AI905899 BG007487 BF820299 R60231 R60787




AA456130 AW383736 BF087045 BG995619


439046
2580645_1
AA829660 AI687296 AA947354


440638
371165_1
BG009500 AI376551 AA897445 T87714


434747
117643 _1
AW976537 AI033582 AA837085 AA745261 AA648395


453929
97058_1
AA045461 AA284145 AI494193 AI469576 AV700262 BF222563 AW190054 AI263834 AA040074 AA045137


455834
1518503_1
BE145364 BE145429 BE145418


421921
100_2
BC011987 AA976353 AA858127 AI370017 AW150562 N22469 AI823318 T39763 AW594422




T39771 T39737 T39788 AA857399 T39764




T39745 NM_012456 AF150089 BI835353 BG683054 BM021899 AI693046




AI350334 AA609007 AA405045 AA412628 AW175775 AA035114




BE729995 AV755393 AW027107 AI500393 H83363 F27315 BI966096 BG338889 BF342663




AI097243 BE047615 AA628513 AI004714




AA147779 AA993774 AA670296 AA845320 AA908522 AI002166 W61055 BE349980




AW205379 R80128 AA383242 AI016394 AA035115




AI309333 AI568254 AI094665 W04770 W24624 F27773 AA378373 AA353029 R50427




BF341287 R99348 BF374303 N75319 AA563593




BF933630


400120
133_1
BC014030 NM_004068 BC004996 AK057883 D63475 BM468205




BG386792 BG750447 BG575842 BG479084 BG741027 AU118129




BE901043 AU141281 BG825395 BG338276 BE396231 AU121493 AU131489 BF341132




BG335659 BI769251 AU142779 AU124483 BG480828




AU121353 BG702326 AU137866 BG759046 BI460601 BE887290 BG750415 BF127710




BG757819 BI160266 AU122086 BG824046 BG744180




BE884943 BM006610 BG702599 BI870749 BF307033 BI334771 BG480606 AU142599




AU141336 BM018563 BI335565 AU138308 BE391241




BG774488 BE278025 BG717959 BG706920 BE312567 AU138300 BE303034 BE303016




AU139252 BE336797 BG470940 BE336735




BF305197 AU134288 AU139907 BE261245 BE208718 BG761912 BF212890 AW732692




BM011258 AW247629 AU136696 BF530078




BF204146 AL048752 BG328927 BE388385 BE260122 AU138789 BE253465 BF733914




AW249415 AW239535 BE311791 BE256236 BF529742




BG770465 AW245777 AW245813 BE296677 BE266852 BE168115 BE396596 BE280057




BE168229 AI750820 AU134137 BF792191 AI272215




AI907348 AW238875 BF805152 BF568397 BE712727 BE081443 BE001805 BF724536




BF744705 AW247385 BE796369 AU133759 AV705142




BE794402 BM465821 BG281284 AW384831 BM450689 AU134125 BE311650 BF356318




BM462831 BG420555 BE749127 AU134590




BM019438 BC013796 BG761223 BG122058 BE872076 BG748496 BG821374 BE619159




BG423244 AU137110 AU127210 BE270081




AA496860 AA351380 AA356303 AU099781 AA355912 AA371411 AA325535 U36188




AL569574 AL577204 AL525543 AL567342 AL567334




AL567122 AL536527 AL567098 BG681585 BG824951 BI870652 BI225855 AW393878




BG750632 BI223803 BE877552 BE270473 BE389392




BE779021 BM017845 BI117816 BE396513 BM049006 AW393945 BE786941 BE267724




BE562981 BE314236 BF744102 BM019781 BF806063




AA909846 BF924341 AW361460 AA425174 BE940557 BF761585 BF931276 BF934886




W68597 BF933977 BI035906 BE836064 BF837576




BI018368 AA205908 H54612 R88902 BE812330 BE932300 BF924562 AW805376 BE769859




R87381 M371901 BE838855 AA326381 W56191




AA341231 AA464093 AL575977 AL518650 AL547393 BG338327 AL517563 AL536921 BG207096




BG207589 BG199290 BG220159 BG744842




BG104730 AA555035 AA618009 AA861062 AA610582 AW245418 AI040983 AA521380




AW245455 AU147292 AU155236 BE620286




AW250767 BF888236 BE620819 AU154343 AU150827 AU148334 AW069495 AA701091




AU155225 AW250019 AA666235 AU147764




AA449739 BF907598 AW043731 AU144390 AI924565 BE300631 AW874021 BE208088




BF732773 BF594057 AI159873 AU143930 N24100




AI052499 AI989370 AI366151 AI139248 AU144776 AA838250 AI095433 Al269227




BF811358 AU151352 AA477554 AI131290 AI049797




AU157349 AA620559 AA581533 AI338299 AA402755 AI050079 AU157614 AI280691




AA706590 BE206615 AA861056 AU153214 AU155712




AW069554 AI081124 AU155846 AI081123 AA719876 AI754976 AI027763 AA723095




BI518782 AW050706 F37521 R79062 AA565530 H39826




AA404670 AU158884 AI139682 AA513633 AI283202 AA651856 AI623515 AA427413




AW248474 BF841432 BM453246 AI302390 AA808269




AI249357 AA132775 AA716732 AA479932 AI198296 AI208674 AI088433 F36977




AA496899 AW615762 AA602541 AA341161 D58785 T15399




AI286077 W69152 F28418 AI272156 AA338034 AA568455 BE206121 AI080033




AI699680 AA861255 AI953465 AI613240 AL581773 AL531577




BF526361 AA657809 AW152670 BE621523 AW078705 AW673719 AA102613




AA195604 R72209 AA402208 AA404305 N24999 AI963535




D54741 BI461415 BM475959 BI260926 BI116213 BE280120 BE940258 BE280044




AI905744 BG001474 BE937718 BF799283 BI091621




BG421006 BG289235 BF736825 BI253429 BG170064 R72512 T92815 BF931257




BM455183 BG033362 BG574220 N31395 BF739185




AA371995 BE879011 BI198754 BF378989 T12266 BM019421 BI194570 BF378992




AW996595 BI858649 W94605 W61345 AA122384




AA171923 T92736 AA761504 AI819039 AI439358 AL517777 AL565919 AA622001




AA642695 AA704144 AA081465 AA070621 AA375562




AA700011 AA926863 W37310 AL566236 BF677809 BG760021 AW361433 BE828605




BE268449 BF805977 BG292452 BF981071 BF217108




BF928698 R33993 AW882841 AI857453 AW078733 AI433035 AI018103 R90927




AA804720 AA551734 R33835 H19741 R78754 BF930494




BG109583 AA631926 BE834008 BG996533


437580
1240047_1
AW976343 AA761075 AA983906


433162
2167905_1
AI742311 AI025842 AA578843


412240
8235_1
BF963346 BI460763 BI599382 AI188089 AY055003 AW959185 AA187681 AI692282 AU153608




BI493898 BI493899 AI797349 BE550679




AI701137 AA744561 AA082682 BE218816 AW511501 BF447881 AI859101




BF059295 AI914038 AI346564 AI685003 AI676076 AI125336




AW469637 T10225 AI831296 R53451 AI453440 AA983739 AW470873 AI348290




BE857670 D55901 Z43908 T34429 F07305 AK074340




AL538118 BG201484 AI334192 T35535 AW176751 BI496132 BI496133 AA469961




H72176 BF326265 AI770016 AI693177 BF223634




BF963661 BF962265 BI034894 AI475851 N69071 AI910707 BE219038 AI918036




BE670589 BM193515 AI338497 AA805525 AA487625




AA830336 AA749368 AW104323 AI628055 AI932332 AI272788 AI536849 AW162414




AW161923 T23854 AA610763 AA912188 AW339028




Z39946 T10224 F03171 AI205478 AI638791 F02580 F01551 AW207551 AA421030




BE246012 BI034937 BI035373 BF939581 H19984




BE867247 H92677 N55988 BF957332 H18615 R16442 BF956229 BF961886 R12698




AA101186 AA365932 R53452 BF062714 BF959364




H41634 AW086187 H19985 BF054881 F02581 H18616 H41527 AW003446 BE243443




H92276 AW954002 BI670132


447881
44623_1
AK074291 AW293424 BE676135 AI832125 BE019146




BE465019 AI761124 AA617778 AI279232 AW575897 AI672039 F28618 BF924261




AA722184 BF934174 BE004328 AV749301 BE880282 BI019798 BI019389 BF928776




AW813409 AV726604 AA077560 BE272975 BF949119




AW814195 BE879126 AI697926 BF594155 BE205787 BF063513 N35828 AI948557




AI433839 AI379679 BG056182 AI589094 N23123




AA588805 AW316581 AI080272 AI421980 AI493318 BF194830 N87590 AA495993




N32996 AA699844 H96845 H96592 N28741 BI035539




BF747723 BF171066 W01350 H05495 AI243785 Z39622 AA887432 AI350659 R46102


411590
2329293_1
T96183 T64070 AA094134


414588
296561_1
AA495793 AA302905 AA149783 BI059949 BF916498 BF924146 AW838065 BF990024 AW837915 AW837899 AW837927




AW837919




AW837903 AW838051


446126
610_2
BF946219 BF946218 BF851494 AL536879 AA457150 AI590194 AI582629




AA464515 AA916242 M337109 AA336509 N46906 AA336322




AA336407 AA337222 AA319240 BI026817 BI027058 AL536880 AI693827 AA651730




AI701013 BM068789 AW339506 AA293021 BF891108




AI458885 AW361203 AW974652 AI761251 AI655763 AA628063 BE047125




AW085916 AI129587 N52070 AW172361 AA052951 AW085909




AI000008 AA962570 AI371342 AI364207 AA464514 AI962506 AI824603




AW376300 AA058439 AW361192 AV656660 N50282 BF820514




BF891008 H40784 BF891112 BE708029 AW043567 AA056762


438619
35124_1
NM_016575 AB032773 AI765521 BF593742 AI497757 AI761233 AW467938 BF000670




AI818496 N24761 AL043306 BF476138 BF593836




AA132787 AI147248 AI086795 AA151317 T95298 AW083548 AA058371 N27951




AI769860 AI784548 AW205506 AI800679 AI041733 AI459902




BE327641 AI865829 AI254736 AI302433 AI744176 AI241825 AA027842 AL524933




AL524932 BF947764 BF340737 BF948700 BG996395




N53455 N21027 AI127616 N35901 M682443 AA678249 AA719371 M132582 T15981




H99958 N40717 AW959402 AI267251 BF909329




AI142035 T95379 H29420 R59632 H17318 H17331 H29327 R40829 R43395 R59573




AI749561 R56599 H16755 AI694500 AA027907


411468
1085621_1
AW857472 AW847920 AW857357 AW857470 AW857354


432709
1870037_1
H17238 AA563739 F05559 F06116


414883
8371_2
AF274943 BG494894 AI719075 AA908783 AI935150 AI422691 AA910644 AA583187 BM272167 AI828996




AA527373 AW972459 AI831360




AA772418 AI033892 AA100926 AU154749 AI459432 AI423513 AI094597




AA740817 AI991988 AI090262 AI312104 BI256707 AA459522




AA416871 AI075239 AI339996 AA701623 AI139549 AI336880 AA633648




AI989380 AI362835 AA399239 AI146955 BF514270 N92892




AI348243 AI278887 AA459292 AI494230 BF507531 AI492600 M962596 AW613002




AA293140 AA235549 BF108854 AA954344 N49682




AI457100 AW589407 AW300758 BE220715 BE220698 BE569091 BM009647




BF900351 AI537692 AI203723 AI857576 AA584410 AW371667




BM172363


449901
1269988_2
BI227033 AI674072


426295
510_1
BE880923 BG390191 AW470082 AW014585 AI423255 BI714731 BG054894 AW780248 N31683 AW664132




AW467353 AI983152 AA617918




BF447795 AI088357 AA807328 AA576970 AI741153 AI755003 AI474016




AI422030 AI348114 AW997085 BM271753 AI363147 BM311311




AM146640 AI246771 AW512619 AI359020 BG054897 AI292234 AI215830




AI283836 C06205 AW503423 AW272680 N33205 AW873021




AA070724 AI753886 AW192487 AI087151 AA658909 AI346368 AI335677




AA825442 AW440066 AW131357 AW513210 AI082314 AI085455




BE551404 AA780704 AW008596 AI796964 AA917471 AI400531 AA668626




N72207 AI306482 AW440562 AI084687 AA347280 AA063536




BF477389 AI241662 AA931543 AA484310 AA812486 AI032216 AA665779




AI916336 AI350590 BF198106 AI433377 AI300638 AI672626




AI282741 AI351487 AW105544 AA973627 AW517914 AA715424 AA508454




BF334080 AI274618 AW367201 AW572619 AW469088 AA382095




AI368364 AI146934 AI357180 AI361181 BI911347 BI871044 AA136325




BF084010 BF084007 AA335788 AI920878 AA809614 BE932941




AI678261 C75308 AI148479 BE178174 W88513 BM013627


455705
77478_2
BF971018 BE513812 AA133359 AW581719 BF434402 AL600619 BG699731 BI551395 AW027136




AW055130 BF939512 AI076048 H18584




AW161061 AA864334 AI816101 BE049456 AW044012 AA954079 AI274682




AI370526 AW131990 AA853195 AA853191 BG118295 AA761620




BG705371 BF355591 BF336596 AA360497 H28072 BG198352 AW364709




H40926 H44214 AA836538 BI059563


424571
9758_1
BE379766 AW152643 AI803450 AI564343 AI092711 AI140525 AW152156 AI620740 AI554689




AI161209 AI290242 AI339745 AI374611




AI347388 AI858296 Al140529 AI366124 AA493912 AA406235 AA493889




AI057160 AW022264 AI097277 AM144126 AI080051 AA983529




AA860507 N53469 AA843767 N81163 N70628 AA424577 AA983537 BF003004




AA626688 AA235977 AI057152 AI095366 AI095356 AA458646




AW194479 AA150439 AI375272 AW571777 AI359198 AA993793 BE614394 BE738239




AA127883 AI034344 T59504 D81608 AA908704




AW051665 AA382785 AA307208 N24639 AI370715 BE244980 AA548596 AW449675




AM91008 BF223749 N70752 N22266 AI191012




AA028001 AI419106 BF215661 BF591548 BG942356 AI474968 BE858217 BF793358




AV756758 BG483603 AI093724 BF693395 BG545345




AI744294 T59549 AA811773 BG499757






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0356]

21








TABLE 70








Pkey
Ref
Strand
Nt_position







403790
8084957
Minus
87826-87947,89835-90002


405102
8076881
Minus
120922-121296


402727
9211324
Plus
54596-54777


405268
4156151
Minus
24404-24521


400517
9796686
Minus
49996-50346


405141
8980911
Plus
99861-100054


403738
7212067
Plus
38434-38562,56876-57007,





59789-59876,6071


403904
7710675
Minus
8129-8261,41911-42053


402737
9212184
Minus
13358-13552


401091
9958240
Plus
94760-94898


402507
9797889
Plus
118979-119086


402964
9581599
Minus
46624-46784


406423
9256411
Plus
165600-165824


406038
8389537
Plus
37764-37877


401649
9090641
Plus
80229-80762


400475
9957990
Minus
64771-64887,67396-67563


403575
8101156
Minus
81961-82068


401016
8117441
Plus
126234-126359,128050-128236


405689
4508117
Minus
92558-92698,94282-94382,





97977-98180.9920


403809
8568861
Plus
33910-34129,34583-34862


403671
7272159
Plus
104461-104701


402041
7770639
Plus
69353-69454


403478
9958258
Plus
116458-116564


403027
7670575
Plus
60696-60932, 61362-61521


400471
9931670
Minus
105629-105760


404433
7407979
Minus
124561-124764


401898
8570008
Minus
72013-72132, 72400-72487


402836
8745058
Minus
96756-96941


403330
8516153
Plus
116558-116698


403743
7652003
Minus
136463-136646


406274
7543787
Plus
932-1123


401197
9719705
Plus
176341-176452


404676
9797204
Minus
56167-56342, 58066-58189,





58891-59048, 6045


401635
7145001
Minus
51895-52764


403976
7657840
Plus
24755-24969


401928
3873182
Plus
54932-55070


401952
3319121
Minus
53770-53979


405117
8096945
Minus
109169-109866


400557
9801261
Plus
208453-208528, 209633-209813


403920
7710868
Plus
40312-40490


403496
7523883
Minus
140940-141126, 144920-145123


405122
8137462
Minus
95449-95646


403320
8318526
Plus
127978-128124


405270
4156145
Minus
3952-4123, 6886-7010, 8541-8728


405688
4508117
Minus
88702-88899


401627
8575953
Minus
72828-73029


403576
6862645
Minus
73475-73940, 74079-74207


403742
7212067
Plus
84805-85525, 91096-91227,





93970-94057, 9523


405086
8072509
Plus
73664-73841, 74081-74217,





74610-74779, 7492


402929
8217647
Minus
51862-52032


404240
5002624
Minus
116132-116407, 116653-116922


400906
9966290
Plus
112863-112989, 120162-120286






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (Gl) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0357] Table 8A lists about 254 genes down-regulated in Hepatitis C positive liver tissues compared to Hepatitis C negative liver tissues. These genes have the potential to be diagnostics and/or prognostic markers for Hepatitis C infected liver tissues. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of Hepatitis C negative liver tissues to the “weighted average” of Hepatitis C positive liver tissues was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the Hepatitis C negative liver tissues was set to the trimean of several different Hepatitis C negative liver tissues. The “weighted average” of the Hepatitis C positive liver tissues was set to the either 10 or the trimean of several different Hepatitis C positive liver tissues, whichever value was greater to eliminate ratios with a denominator of zero or less.
22TABLE 8APkeyExAccnUniGeneUnigenen TitleR1R2451831NM_001674Hs. 460activating transcription factor 32.25E−0423.90450912AW939251Hs. 25647v-fos FBJ murine osteosarcoma viral onco7.80E−0623.32414559AV656184Hs. 76452C-reactive protein, pentraxin-related9.77E−0420.48447078AW885727Hs. 9914ESTs2.93E−0214.42416188BE157260Hs. 79070v-myc avian myelocytomatosis viral oncog8.41E−0412.75451029AA852097Hs. 25829ras-related protein9.37E−0310.77434078AW880709Hs. 283683chromosome 8 open reading frame 41.93E−0310.32442941AU076728Hs. 8867cysteine-rich, angiogenic inducer, 619.18E−0510.10405278NM_002864: Homo sapiens pregnancy-zone pr5.19E−038.45428106BE620016Hs. 182470PTD010 protein5.03E−047.47446066AI343931Hs. 149383ESTs2.01E−037.30407173T64349gb: yc10d08.s1 Stratagene lung (937210) H4.77E−036.90414220BE298094Hs. 101150gb: 601118231F1 NIH_MGC_17 Homo sapiens c5.74E−026.65431319AA873350Hs. 302232ESTs1.19E−026.52416434AW163045Hs. 79334nuclear factor, interleukin 3 regulated2.63E−026.50448607AL042506Hs. 21599Kruppel-like factor 7 (ubiquitous)4.36E−036.50420101AW500529Hs. 95180KIAA0767 protein6.53E−046.49414327BE408145Hs. 185254ESTs, Weakly similar to T24435 hypotheti3.13E−046.32446584U53445Hs. 15432downregulated in ovarian cancer 15.39E−025.82404501nucleoside phosphorylase6.12E−025.70420548AA278246Hs. 920ESTs7.62E−035.68409233AK002001Hs. 51305v-maf musculoaponeurotic fibrosarcoma (a1.09E−045.55427509M62505Hs. 2161complement component 5 receptor 1 (C5a I7.95E−035.48400425AY004252Hs. 287385PR domain containing 121.91E−045.40401149Target Exon2.04E−055.35427557NM_002659Hs. 179657plasminogen activator, urokinase recepto3.33E−055.26449986AW864502gb: PM4-SN0016-120400-004-b12 SN0016 Homo3.61E−025.25419299AI311085hypothetical protein FLJ225733.50E−035.15450335BE218355Hs. 201781ESTs, Weakly similar to B34087 hypotheti3.06E−035.15417752C15737Hs. 269386ESTs5.87E−045.07423053BE312679gb: 601148138F1 NIH_MGC_19 Homo sapiens c1.81E−045.02448871BE616709Hs. 159265kruppel-related zinc finger protein hcKr2.22E−035.02408278AW876813phosphoglycerate dehydrogenase2.66E−045.00431326AW970580Hs. 198689KIAA0728 protein6.12E−024.92436068AK000038Hs. 300979ESTs, Weakly similar to I38022 hypotheti5.92E−034.85409795AI934808ESTs, Weakly similar to T46338 hypotheti2.32E−034.84430070AF197927Hs. 231967ALL1 fused gene from 5q312.94E−054.83411929AA098880Hs. 69297ESTs1.14E−024.75402273Target Exon2.11E−034.72453196AW003567ESTs3.50E−034.72418303AA215701Hs. 186541ESTs, Weakly similar to I38022 hypotheti2.63E−024.70455510AA422029Hs. 143640ESTs, Weakly similar to hyperpolarizatio6.12E−024.65423720AL044191Hs. 23388hypothetical protein DKFZp434F03181.13E−034.63402517Target Exon1.13E−034.61454598AW809716gb: MR4-ST0124-241199-026-h09 ST0124 Homo3.06E−034.40448429D17408Hs. 21223calponin 1, basic, smooth muscle1.89E−024.35429258AA448765Hs. 184252gb: zx10e09.r1 Soares_total_fetus_Nb2HF87.00E−034.34412176AW898334gb: RC3-NN0070-270400-011-f02 NN0070 Homo7.60E−044.27441269AW015206Hs. 178784ESTs1.29E−024.22458867AW995393gb: QV0-BN0042-170300-163-g12 BN0042 Homo1.16E−064.22417732R36065gb: yg69h06.r1 Soares infant brain 1NIB H9.14E−054.13444863AW384082Hs. 104879serine (or cysteine) proteinase inhibito6.12E−024.13415477NM_002228Hs. 78465v-jun avian sarcoma virus 17 oncogene ho7.23E−044.12415994NM_002923Hs. 78944regulator of G-protein signalling 2, 24 k9.78E−044.05417551AI816291Hs. 82273hypothetical protein4.30E−043.98426006R49031Hs. 22627ESTs3.61E−023.95401553Target Exon8.32E−023.95432877AW974111Hs. 292477ESTs9.36E−023.92410052AA525225Hs. 334630Homo sapiens cDNA FLJ14462 fis, clone MA1.14E−023.92459476BE185844gb: IL5-HT0731-110500-087-c08 HT0731 Homo7.31E−033.92404958Target Exon9.30E−043.90431394AK000692Hs. 252351HERV-H LTR-associating 24.76E−033.88403324C2000428*: gi|7705383|ref|NP_057536.1|GC1.34E−023.88447744AA313230Hs. 19413S100 calcium-binding protein A12 (calgra1.69E−023.88447802AW593432Hs. 161455ESTs1.83E−033.87424946M64572Hs. 153932protein tyrosine phosphatase, non-recept5.38E−023.85401913ENSP00000249158*: CDNA8.32E−023.84430389AL117429Hs. 240845DKFZP434D146 protein1.10E−023.83441188AW292830Hs. 255609ESTs3.14E−023.82449236AJ403126Hs. 26373Homo sapiens cDNA: FLJ23449 fis, clone H4.73E−023.82446052AA358760Hs. 95893gb: EST67699 Fetal lung II Homo sapiens c2.16E−053.81431861AA521072Hs. 292128ESTs5.29E−043.76411993AA099329Hs. 151764ESTs2.54E−023.75449335AW150717Hs. 345728STAT induced STAT inhibitor 32.11E−033.73403794Target Exon1.08E−033.71409840AW502122gb: UI-HF-BR0p-ajr-c-08-0-Ul.r1 NIH_MGC_54.51E−053.67410057R66634Hs. 268107multimerin1.39E−023.65456525AW468397Hs. 100000S100 calcium-binding protein A8 (calgran4.57E−023.65447572AI631546Hs. 287331zinc finger protein ZNF2861.45E−033.65449785AI225235Hs. 288300hypothetical protein FLJ232311.69E−023.65412568AI878826Hs. 74034caveolin 1, caveolae protein, 22 kD2.93E−023.64454985AW849292gb: IL3-CT0215-020300-090-E06 CT0215 Homo2.04E−023.63424554AA747563Hs. 131799ESTs, Weakly similar to ALU8_HUMAN ALU S2.93E−023.60440535AI590563Hs. 125910ESTs5.43E−033.60403180Target Exon1.15E−043.58435715T78013Hs. 167279FYVE-finger-containing Rab5 effector pro7.62E−033.57402651NM_000721*: Homo sapiens calcium channel,1.31E−033.57419555AA244416gb: nc07d11.s1 NCI_CGAP_Pr1 Homo sapiens1.53E−043.54404359Target Exon5.67E−033.52418525AW450369Hs. 86937ESTs2.32E−033.52453899AW134536Hs. 243994ESTs5.20E−033.52402889ENSP00000217123*: FLJ00118 protein (Fragm1.31E−033.52403796Target Exon9.27E−043.50404473ENSP00000247423: D-siglec precursor.1.18E−033.50408120AW299900Hs. 267632TATA element modulatory factor 12.55E−033.50447819U90544Hs. 19710solute carrier family 17 (sodium phospha2.45E−023.50402023Target Exon7.83E−023.47415897H08323Hs. 268712ESTs2.13E−043.47445402AI222415Hs. 147852ESTs1.08E−033.47404518CD83 antigen (activated B lymphocytes, i7.15E−023.45450875AK000724karyopherin alpha 6 (importin alpha 7)2.65E−043.45454636AW811502gb: QV2-ST0145-061299-015-b04 ST0145 Homo5.43E−033.44403579Target Exon1.96E−023.40456782AK000462Hs. 132071ovarian carcinoma immunoreactive antigen1.15E−043.39433010AW970018gb: EST382097 MAGE resequences, MAGK Homo3.05E−033.35443725AW245680Hs. 9701growth arrest and DNA-damage-inducible,1.92E−053.33400407AF210247Hs. 283949enamelin7.19E−043.32432304AA932186Hs. 69297ESTs1.25E−033.32447721BE619620lysyl oxidase5.40E−053.32433095AK001092Hs. 302480Homo sapiens cDNA FLJ10230 fis, clone HE2.92E−033.30442364AA993149Hs. 129895ESTs, Moderately similar to TBX3_HUMAN T5.58E−043.30444080AW812664gb: RC4-ST0185-191099-012-h10 ST0185 Homo4.41E−023.30403545Target Exon1.03E−033.26454741BE154396gb: CM2-HT0342-091299-050-b05 HT0342 Homo8.27E−033.24428177AA423967ESTs8.37E−043.24454292N57559Hs. 82273hypothetical protein5.05E−023.22427536BE277141Hs. 115803gb: 601178666F1 NIH_MGC_20 Homo sapiens c8.81E−043.20439760AL355741Hs. 21641Homo sapiens mRNA full length insert cDN1.31E−033.20450799AW407504gb: UI-HF-BM0-adk-g-12-0-UI.r1 NIH_MGC_381.08E−033.16447135T58148gb: yb98g06.s1 Stratagene lung (937210) H2.38E−043.13417079U65590Hs. 81134interleukin 1 receptor antagonist5.21E−033.11428568AC004755Homo sapiens chromosome 19, fosmid 375021.19E−033.11406060Target Exon2.02E−033.07421224AW402154Hs. 125812ESTs1.92E−033.05459399BE407712Hs. 153998creatine kinase, mitochondrial 1 (ubiqui3.06E−033.05440509BE410132Hs. 134202ESTs, Weakly similar to T17279 hypotheti2.25E−043.05408952S79854Hs. 49322deiodinase, iodothyronine, type III6.52E−043.04410619BE512730Hs. 65114keratin 188.62E−033.03452236AI130858Hs. 143218ESTs1.29E−023.02436651BE045962Hs. 275998ESTs5.55E−022.97430071AA355986Hs. 232068transcription factor 8 (represses interl2.04E−022.97405600C12001673: gi|9631264|ref|NP_048045.1|or2.19E−022.97416666H73028Hs. 268992ESTs2.13E−042.96414141BE255083Hs. 145729hypothetical protein DKFZp564A11642.92E−032.95427408AA583206Hs. 2156RAR-related orphan receptor A9.92E−022.92422017NM_003877Hs. 110776STAT induced STAT inhibitor-24.57E−032.92444047AI097452ESTs2.73E−022.90440898AL035690Hs. 165glucagon-like peptide 1 receptor1.96E−022.90408253AW807476Hs. 21051Homo sapiens mRNA for FLJ0012 protein,2.11E−022.88446912AI347650Hs. 128521ESTs, Moderately similar to ALU4_HUMAN A2.54E−032.88457148AF091035Hs. 184627KIAA0118 protein2.32E−032.86444207AI565004cathepsin D (lysosomal aspartyl protease3.53E−052.84438460AB020702Hs. 6224KIAA0895 protein1.51E−032.82405502C7000609*: gi|628012|pir||A53933 myosin I4.72E−022.82453560AA348626Hs. 5890hypothetical protein FLJ233061.19E−022.82417213BE257508Hs. 24719modulator of apoptosis 15.05E−052.81403582Target Exon8.57E−022.80408112AW451982Hs. 248613ESTs2.83E−022.80437180BE180234Hs. 281462Homo sapiens cDNA FLJ14793 fis clone NT2.67E−032.79412429AV650262Hs. 75765GRO2 oncogene1.01E−062.79421993R22497Hs. 110571growth arrest and DNA-damage-inducible,1.62E−042.79407338AA773213Hs. 200558gb: ab66f10.s1 Stratagene lung carcinoma2.32E−032.78448778AF074913gb: Homo sapiens transcription factor Pax1.14E−022.77422743BE304678Hs. 119598ribosomal protein L32.36E−022.75427413BE547647Hs. 177781hypothetical protein MGC56185.43E−032.70447306AI373163Hs. 170333ESTs5.21E−022.70447526AL048753Hs. 303649small inducible cytokine A2 (monocyte ch2.20E−022.69400818Target Exon2.26E−042.69432128AA127221Hs. 296502ESTs3.25E−022.67414890BE281095Hs. 77573uridine phosphorylase1.59E−032.65413731BE243845Hs. 75511connective tissue growth factor2.45E−022.65434180AA921757Hs. 116180ESTs1.37E−042.64435992AI033259Hs. 118317Homo sapiens cDNA FLJ12088 fis, clone HE2.83E−022.63419180T95449Hs. 220817ESTs1.56E−022.63457054NM_014137Hs. 177258PRO0650 protein1.75E−022.63432745AI821926gb: nt78f05.x5 NCI_CGAP_Pr3 Homo sapiens7.21E−042.62427899AA829286Hs. 332053serum amyloid A11.75E−032.61405443Target Exon6.44E−032.61428403AI393048Hs. 326159leucine rich repeat (in FLII) interactin6.94E−022.61409463AI458165Hs. 17296hypothetical protein MGC23762.63E−022.60402878ENSP00000217420*: BA122O1.1 (A novel prot3.12E−042.57404046NM_019120*: Homo sapiens protocadherin be1.66E−032.56458873AW150717Hs. 345728STAT induced STAT inhibitor 33.05E−032.55426653AA530892Hs. 171695dual specificity phosphatase 12.52E−042.55411920AW876263gb: PM4-PT0019-131299-006-E09 PT0019 Homo1.75E−022.54454339AW381980gb: QV4-HT0316-091199-028-05 HT0316 Homo2.04E−022.52432909AA570111ESTs, Weakly similar to ALUE_HUMAN !!!!1.30E−032.51411283AW852754gb: PM1-CT0247-180100-009-c05 CT0247 Homo3.03E−022.50415759AA169182Hs. 182740gb: zp20e02.s1 Stratagene fetal retina 932.43E−032.50447650AW581199Hs. 161137ESTs, Moderately similar to 154374 gene8.28E−032.50402012ubiquitin specific protease 153.88E−042.50423499AW608884Hs. 28068ESTs2.96E−042.49402124NM_031891: Homo sapiens cadherin 20, type3.05E−032.47412755BE144306Hs. 179891ESTs, Weakly similar to P4HA_HUMAN PROLY1.38E−032.47418443NM_005239Hs. 85146v-ets avian erythroblastosis virus E26 o1.37E−042.47419239AA468183Hs. 184598Homo sapiens cDNA: FLJ23241 fis, clone C6.72E−022.47419909AL136653Hs. 93675decidual protein induced by progesterone1.08E−032.45402608CD83 antigen (activated B lymphocytes, i4.57E−022.44402022Target Exon4.00E−032.42458568AI769067Hs. 127824ESTs, Weakly similar to T28770 hypotheti8.65E−052.42442702AW235697Hs. 130980ESTs6.12E−022.42424236AW058114Hs. 7837phosphoprotein regulated by mitogenic pa6.17E−032.42427700AA262294Hs. 180383dual specificity phosphatase 62.04E−022.41410204AJ243425Hs. 326035early growth response 14.00E−032.41424221NM_014478Hs. 300684calcitonin gene-related peptide-receptor8.59E−052.41401376Target Exon8.26E−032.40456147H41324Hs. 31581ESTs, Moderately similar to ST1B_HUMAN S4.28E−022.40407654AW064121Hs. 279175ESTs1.83E−032.38402364CCAAT/enhancer binding protein (C/EBP),3.25E−022.37438808M73980Hs. 129053Homo sapiens NOTCH 1 (N1) mRNA, complete1.30E−052.36401942C17001396*: gi|3212355|pdb|1A4P|A Chain A3.80E−032.33426521AF161445Hs. 170219hypothetical protein3.03E−022.32446378AI905699citrate synthase3.18E−032.31408935BE539706Hs. 285363ESTs4.77E−032.31424028AF055084Hs. 153692Homo sapiens cDNA FLJ14354 fis, clone Y76.93E−022.29433070N75346CDC20 (cell division cycle 20, S. cerevi5.56E−022.29456825H67220Hs. 169681death effector domain-containing1.24E−022.26459711BE386801Hs. 21858trinucleotide repeat containing 38.29E−032.26406140Target Exon8.12E−052.26400327M18679Human variant 5S rRNA-like gene and ORF,8.07E−022.25455968BE168828gb: QV1-HT0517-020400-145-f04 HT0517 Homo2.65E−042.25431387AI878854Hs. 252229v-maf musculoaponeurotic fibrosarcoma (a1.75E−022.24421233AA209534Hs. 284243tetraspan NET-6 protein1.82E−022.23401522CGI-35 protein5.42E−032.22422831R02504Hs. 332943ESTs1.14E−022.22401346hypothetical protein2.93E−022.21410268AA316181Hs. 61635six transmembrane epithelial antigen of2.36E−022.20434495AW352170Hs. 129086Homo sapiens cDNA FLJ12007 fis, clone HE1.56E−022.20442321AF207664Hs. 8230a disintegrin-like and metalloprotease (1.69E−052.19458692BE549905Hs. 231754ESTs7.60E−022.19403750C5001092: gi|6671939|gb|AAF23199.1|AC01675.90E−032.18441516F06700Hs. 7879interferon-related developmental regulat2.93E−022.18423503M92843Hs. 343586zinc finger protein homologous to Zfp-361.19E−032.18456465M94065Hs. 94925dihydroorotate dehydrogenase6.84E−052.17440249AI246590Hs. 249175ESTs1.53E−042.16459235BE246010Homo sapiens mRNA for FLJ00038 protein,4.54E−042.15409540AW409569Hs. 101550gb: fh01e09.x1 NIH_MGC_17 Homo sapiens cD7.98E−042.14412541BE009398Hs. 74002nuclear receptor coactivalor 17.31E−032.13449713AW027025ESTs6.19E−042.13442351W52642Hs. 8261hypothetical protein FLJ223938.39E−042.13407869AI827976Hs. 24391hypothetical protein FLJ136123.06E−032.13411372AI147861Hs. 213289low density lipoprotein receptor (famili7.71E−052.12423168R34385Hs. 124940GTP-binding protein1.06E−022.11414002NM_006732Hs. 75678FBJ murine osteosarcoma viral oncogene h4.02E−062.10419048T91158Hs. 268605ESTs1.37E−032.09433178AB038269Hs. 253706cysteinyl leukotriene CysLT2 receptor; c1.92E−032.08432190T80206Hs. 14716ESTs1.25E−032.07447261NM_006691Hs. 17917extracellular link domain-containing 19.36E−022.07436869NM_014867Hs. 5333KIAA0711 gene product2.67E−032.06402441Target Exon4.77E−032.05441475AI929602Hs. 177phosphatidylinositol glycan, class H2.02E−042.05404126ENSP00000211797*: Helicase SKI2W (Helicas1.08E−032.05443514BE464288Hs. 141937ESTs8.57E−022.05404187NM_019602: Homo sapiens butyrophilin-like3.35E−032.03424125M31669Hs. 1735inhibin, beta B (activin AB beta polypep1.82E−022.03400409AF153341Homo sapiens winged helix/forkhead trans4.37E−032.02404752NM_024778: Homo sapiens hypothetical prot2.82E−022.02449338H73444Hs. 394adrenomedullin2.36E−022.02437389AL359587Hs. 271586hypothetical protein DKFZp762M1152.63E−022.02401405Target Exon3.49E−022.01429446AI547111gb: PN2.1_A01_G12.r mynorm Homo sapiens c2.36E−022.01431111AB033072Hs. 250015KIAA1246 protein1.44E−042.01406210Target Exon1.82E−022.01417076AW973454Hs. 115175ESTs, Moderately similar to ALU7_HUMAN A2.04E−022.00Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of Hep C− Liver over Trimean of Hep C+ liver Ratio


[0358]

23







TABLE 8B








Pkey
CAT Number
Accession







449986
2292_10
AK055879 AW007836 AA873089 N74374 AV720071 AA702706 AW055276




BE672779 AW864502 AI678780 AW864369 AI052145 T40984




N74426


419299
36328_1
BM477587 BE675426 AA827059 AI597639 AI571409 AI719948 AI311085




AA953361 AI498787 AI364049 AI311084 BF871020 BE549868




AI356384 AA236660


423053
367623_1
BE314223 AA320990 BE312679 BI054000 BI324838 AW057717


408278
MH337_68
BG422281 BG422108 AW177973 BG750536 AW876813 AW876814


409795
MH905_27
AI498073 AI934808 AW374654 BI036066 BE709215 AA077985 BI831355




BF932450 BF770705 BF379220 AA077682 AA076814 AA076875




BI027970 AA077787 AA077311 BF811798 AW393752 BF327269 AA077305




AA078114 BF800885 BF942930 AW903223 BF916052 AW903170




AW903224 BF352664 BF379209


453196
505145_1
AW003567 AI963955 AI990231


454598
1063474_1
BF374577 AW809840 AW809996 AW809798 AW809695 AW809646 AW809738 BF374582




AW809716 AW809826 AW809802 AW809747




AW810152


412176
199671_1
BF818635 AW898334 H66426 AW899792


458867
1246993_1
AW995393 AJ403118


417732
299677_1
R12062 R12616 Z43412 R36065


459476
169217_1
AA584407 BE185844 BF764955


409840
915929_1
AW502122 AW501663 AW501720 AW502125


454985
1087722_1
AW849431 AW849428 AW849424 AW849422 AW849420 AW849292 AW849427


419555
252042_1
AA244401 AA244416


450875
10801_1
AL041364 BE393266 AA573189 BF589066 AI623423 AI889612 H54292




AA085863 AA669816 BE542832 BI094274 AI360690 T61853 AW081194




AI541147 AW750358


454636
1064998_2
AW811471 AW811548 AW811521


433010
1234715_1
AW970018 BE843649 BE843644 AA573622 R08736 AA573669


447721
1889_2
BC013767 AL572931 BE742185 BI520113 AW959076 AI341487 AI623222 BM091074




AW593800 AI983635 AW275114 AI952164 BM091378




AA977038 AW513859 AI801910 AW273202 AW166266 AW337946 AI086791




BE907359 AW273147 AI453134 AA250733 AW072844 AI818468




AI561259 AW470887 AW300481 AW103087 AW175624 BE048584 BF063936




AI207341 AW193240 AW193322 AW264492 AI682412 AI631778




AI669677 AI128695 AA448630 AA456607 BF313680 BG898294 BI195544




BG421755 BI760100 BE383304 BF329916 BF526599 AA385255




BI520887 AA410939 AA448721 BF525380 BG423666 BI761786 BF944570


444080
20054_4
AL545854 H05874 AW812663 BE146011 AW812664 AV647861




AW812655 AW812611 BG718126


454741
220369_1
BE154396 BF846839 AW842318 AW817959 BE154393 BI050168


428177
8737_7
AA779866 AA423967 AA423968


450799
819959_1
W31274 AW407504 AI738877


447135
579607_1
T58148 AW516579 AW059603


428568
738084_1
BE259137 BE251523


444047
56634_1
AK057279 AI939345 BF748883 AI161300 AI097452 AI097450 BF958187 BE936529




AW890840 AW890825 BE763814 AW408933 BI038453




BE735308


444207
9172_3
BE739425 AA514221 AA865491 AI828293 AA470456 AI276739 AA169357 BE932464




AA514889 AW819039 AW819083 BE843048 AI432496




AI470335 AI247243 BG533994 AA513783 AI887309 AA528036 AW972006 AW873028 AI924914 AI818810




AW152378 AW084946 AI521413




AI669583 BE932521 AI581370 BE180238 AW089750 AW771461 AW089714 AI590949 AI819148




AA731056 BF815234 BF911506 AA235803




AA485373 AI735658 AW393133 AW073080 AI707637 BF353320 BE843111 AW819036 AW393135




BG697291 AV648670 AV654332 AV687530




BG566964 AI807430 AI676072 AA837010 AI452482 AI625817 AW241750 BE048616 AI290928




AI680714 AA485530 BE175687 AV648513




AW130312 AI000556 AA632893 BE674169 BF001208 AA948166 BE175650 AA524664 AA490345




AI244948 AA602956 AA483492 AA918178




AW802049 BG675859 AV658871 BG678060 AI565004 AW819026 BE843092 AV686437 AV723049




BG616948 AI911647 AI743490 AI091096




BE857251 AI962074 AA040027 AW769317 AA343477 AA640112 BF876213 R82948 H26425 H82876




BE843095 BE843140 BG536641




BG617830 AA235802 BE774985 BE006682 BF342375 AA903144 BF338083 BF984258 AV657996




AI749532 BE768614 BE857252 BE932516




BE768573 AV657993 AV657777 AV752631 BE774974 T55847 BF095761 BF911511 BE710793




BE180119 BG617338 H45942 T55897 AV657718




BG563497


448778
7800_1
AW505435 U62539


432745
112643_1
AA658826 AI821926 AI791191 AA635129 AA564492


411920
1141803_1
AW876134 AW876141 AW876398 AW876328 AW876308 AW876331 AW876415 AW876326




AW876181 AW876138 AW876131 AW876240




AW876206 AW876289 AW876218 AW876261 AW876343 AW876347 AW876188




AW876371 AW876273 AW876231 AW876191 AW876209




AW876322 AW876314 AW876165 AW876363 AW876378 AW876376 AW876169 AW876412 AW876426




AW876407 AW876257 AW876263




AW876366 AW876334


454339
789006_1
BE152238 AW381980 BE152235 BE152244 BE152232


432909
137712_1
AA702596 AA570111 AI348435 AW192161


411283
215263_1
AW852754 AW852757 AW852617 BE172755 AW852897 AW835444 AW835440




AW801490 AW801489 BF839901 AW835520


446378
10288_1
BC010106 AL560552 AU133296 AU133086 BE268567 BE268523 BI544879




BE398161 BG473088 BI544445 BE258021 BE296339 BE255040




BE263020 BG706790 AL598627 AW952337 BG758113 AW512753 BE267666 BE253415 BI225718 BE268350




BE258245 BI224965 AW772605




BG723903 BE397282 BI196341 BG702880 AI878949 AL600437 AA416759 BE259917 AI031582 BF512142




AI088248 BE560328 AI802623




AI288613 AL597585 AW768553 AI816352 BF732831 BI225687 AA833686 AA722593 AA807750




AW068064 AA405187 AI923236 N51593




AL527710 BG282576 AL525927 AL525971 BI869547 AI064725 R91856 H46814 H20112




W01682 AW848870 AW848585 AW376662 AW848985




AW848937 AW848862 AW848581 AW848512 AW848176 AW752623 AW752618 AW376822




AW376821 AW376684 AW376623 AW376622




BE706047 AW752602 AW752691 AW752674 AW752652 AA379167 AW752610 AW752684




AW752613 AW752660 AW848709 AW848576




AW849155 AW848981 AW848980 AW848979 AW848978 AW848973 AW848916 AW848713




AW848708 AW848642 AW848641 AW848639




AW848573 AW848493 AW848492 AW848489 AW848488 AW848487 AW848353 AW848352




AW848220 AW752698 AW752697 AW752682




AW752681 AW752680 AW752679 AW752664 AW752651 AW752638 AW752637 AW752636




AW752628 AW752626 AW752624 AW752619




AW752596 AW752608 AL582019 BE875587 AL529175 AW965868 BG686208 AA259073




BE696973 AA459543 AA358314 W40564 BF926427




AW849000 AW848718 AW848515 AW848507 AW848444 AW848440 AW848232 AW848222




AW752657 AW376786 AW376781 AW376615




AW376614 BI752581 AA534520 AI748906 AA047799 AI014753 AL514460 AL581982




BG743146 W24171 H20102 H11227 AW752607 AW006596




AW130378 BE716519 AW752661 AW848289 BF349557 AW752612 AW752632 AW848910




NM_004077 AF047042 AL560606 BI765896




BI196831 BI855656 BE906674 BG749937 BE535486 BE019810 AA313713 AA992542




AA332541 AA682985 AA356125 BE140478 BG750945




BI457548 BG025661 BF326302 AA325019 BG980676 AA337465 AA321974 BG949285




BG427585 R23979 BG611485 BE560678 W16977




N50379 BG824101 BG471750 BI463171 W04691 AU099360 BG471590




BM011999 BE262945 BE559801 BF756438 BE881957 BE314546




BG911831 BG150811 BG112017 AA157518 T92368 AW752620


433070
22399_1
BE794397 BG121933 BI194378 AW410585 AW954321 BI045952 AW024741




AW444579 AI973044 AI075432 AI093319 AI635673 AA625246




D45465 BE173394 AV724875 AW954889 AI366776 AI498872 AA027096 AI351434 AA916072




AA302868 AA535890 AI420076 AI669179




AI240010 AI201405 AW451691 AA317478 AA424952 AW772292 BE857671




AI869583 AI470411 AI804946 AI744155 D80532


455968
1557068_1
BE168828 BE168823 BE168830 BE168820 BE168931 BE168826 BE168928


459235
26808_3
AW814516 AW815927 AW814504 BF375203 AW814522 AW814521




AW814524 BF375206 AW814518 AW814517 AI940652 BF837881




AW751232 BF374342 AW176453 AW814505 BF886651




AW814525 BG001382 BE933380


449713
519163_1
AW027025 AW028264 AI660390


429446
352_30
AI547111 BG945630 BG913104 AA558007 AW973749






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0359]

24








TABLE 8C








Pkey
Ref
Strand
Nt_position







405278
6139075
Minus
3863-3965, 4823-4891,





5439-5529, 6043-6170


404501
7229859
Minus
37270-37526


401149
7229925
Plus
73117-74019


402273
2979528
Plus
28990-29203, 32299-32402,





32474-32668


402517
9798106
Plus
17569-17721


401553
8099284
Minus
83990-84161


404958
7407941
Minus
2731-4531


403324
8440025
Minus
107104-107309


401913
9369520
Minus
33753-33904


403794
8096910
Plus
163292-163884


403180
7523976
Minus
63603-63759


402651
7960391
Plus
174215-174380


404359
7630876
Minus
11789-12516


402889
9931133
Plus
89392-89498, 90358-90571


403796
8099896
Minus
75073-77664


404473
8079921
Plus
22639-22773


402023
7528158
Minus
132872-133040


404518
8151988
Plus
84494-84603


403579
8101179
Minus
36167-36365


403545
8078400
Plus
25293-25640


406060
6899623
Minus
20339-20746


405600
5923640
Plus
26662-27225


405502
9211311
Minus
50360-50584


403582
8101186
Plus
18308-18458


400818
8569994
Plus
172644-172765, 173085-173200


405443
7408143
Plus
90716-90887, 101420-101577


402878
9908870
Minus
56133-56522


404046
3688074
Minus
2-773


402012
7407997
Minus
111771-111909, 112107-112226,





112519-11269


402124
4033680
Plus
164206-164459


402608
9910096
Plus
37495-37669


402022
7139714
Plus
165595-165748


401376
7417809
Plus
40584-40963


402364
9454515
Minus
54983-55240, 56507-56785,





56982-57365


401942
4982556
Minus
130749-131044


406140
9168231
Minus
49887-50219


401522
7717114
Minus
154437-154847, 155420-155505,





155568-15615


401346
9926605
Minus
12031-13032


403750
7229814
Minus
133638-134110


402441
9796503
Plus
140903-141106


404126
9796876
Plus
48919-49155


404187
4481839
Plus
7644-7991


404752
7109522
Minus
120168-120326


401405
7768126
Minus
69276-69452, 69548-69958


406210
7341959
Plus
58546-58687






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0360] Table 9A lists about 100 genes up-regulated in Hepatitis C positive liver tissues from patients that are non-responsive to pegylated-interferon-alpha plus ribavirin treatment (non-responders) compared to Hepatitis C positive liver tissues from patients that are responsive to the treatment (responders). In both cases, the liver biopsies were obtained prior to treatment. The 100 genes have the potential to be diagnostics and/or prognostic markers for determining the responsiveness of Hepatitis C infected liver tissues to pegylated-interferon-alpha plus ribavirin treatment. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of non-responders to the “weighted average” of responders was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the non-responders was set to the trimean of several different non-responders. The “weighted average” of the responders was set to the either 10 or the trimean of several different responders, whichever value was greater to eliminate ratios with a denominator of zero or less.
25TABLE 9APkeyExAccnUniGeneUnigeneIDR1R2444342NM_014398Hs. 10887similar to lysosome-associated membrane2.34E−025.21431326AW970580Hs. 198689KIAA0728 protein2.34E−024.92424017AA333789gb: EST37925 Embryo, 9 week Homo sapiens5.29E−024.82410099AA081630KIAA0036 gene product1.13E−024.77407360X13075gb: Human 2a12 mRNA for kappa-immunoglobu6.19E−024.52447514AI809314Hs. 208501ESTs, Weakly similar to B34087 hypotheti8.30E−024.52437233D81448Hs. 339352Homo sapiens brother of CDO (BOC) mRNA,1.34E−024.47454525BE280421Hs. 94499ESTs4.53E−024.47452455N25153ESTs, Weakly similar to AF174605 1 F-box2.31E−024.45458393AI792868Hs. 135365ESTs8.24E−024.30458026H12028Hs. 6396jumping translocation breakpoint1.63E−024.20459171AW967801Hs. 151293ESTs, Weakly similar to T42705 hypotheti4.55E−024.17426798AA385062Hs. 130260ESTs8.27E−024.13447339AI770001Hs. 209445ESTs4.55E−024.10447686AI939440ESTs9.52E−024.10433312AI241331Hs. 131765ESTs, Moderately similar to I38937 DNA/R3.29E−024.09435391AA704588Hs. 58934ESTs5.29E−024.05437994U92012Hs. 251659ESTs, Weakly similar to mariner transpos3.83E−024.00437990AI686579Hs. 121784ESTs7.15E−023.97406355C5000598: gi|2136258|pir||I59377 template8.30E−023.95401745Target Exon2.34E−023.92435903AA701890Hs. 118163ESTs4.43E−023.92407366AF026942Hs. 17518gb: Homo sapiens cig33 mRNA, partial sequ1.64E−023.80442269AI797066Hs. 201995ESTs1.10E−023.75452941AL110347Hs. 31074N-sulfoglucosamine sulfohydrolase (sulfa5.11E−033.72455604BE011183gb: PM3-BN0218-100500-003-d09 BN0218 Homo4.55E−023.58401376Target Exon8.27E−023.55456445AK000735Hs. 93581hypothetical protein FLJ105123.86E−023.52416814AW192307Hs. 80042dolichyl-P-Glc: Man9GlcNAc2-PP-dolichylgl8.30E−023.50444640AL133933Hs. 64310interleukin 11 receptor, alpha3.27E−023.48445882AI948717Hs. 225155ESTs, Weakly similar to A46302 PTB-assoc6.17E−023.42453471AL037887Hs. 208179ESTs8.30E−023.42449756W16700Hs. 94542ESTs8.27E−023.42437774AW978199Hs. 291648ESTs, Weakly similar to I38022 hypotheti6.17E−023.30437929T09353Hs. 106642ESTs, Weakly similar to T09052 hypotheti6.19E−023.30405513ENSP00000241075: TRRAP PROTEIN.7.15E−023.28404098Target Exon8.27E−023.25408570AL046406Hs. 103483KIAA1798 protein7.12E−023.22426101AL049987Homo sapiens mRNA; cDNA DKFZp564F 112 (fr4.55E−023.22447164AF026941Hs. 17518vipirin; similar to inflammatory respon8.30E−023.20401242mitogen-activated protein kinase 8 inter4.55E−023.10435154AA668764ESTs8.30E−023.10449137AW134478Hs. 196033ESTs3.32E−033.05448497BE613269Hs. 21893hypothetical protein DKFZp761N06242.31E−023.02410541AA065003Hs. 64179syntenin-2 protein8.30E−023.02405723Target Exon8.30E−023.00449613N63808Hs. 34299ESTs2.76E−023.00459697AA406062Hs. 98002ESTs7.59E−033.00417958AA767382Hs. 193417ESTs8.27E−022.97444736AA533491Hs. 23317hypothetical protein FLJ146819.49E−022.96417042C75563Hs. 113029ribosomal protein S256.14E−022.92403512C3000579*: gi|12643308|sp|Q9Y4K1|AIM1_HUM7.66E−032.92404226Target Exon4.53E−022.90443884N20617Hs. 194397leptin receptor8.30E−022.88432222AI204995gb: an03c03.x1 Stratagene schizo brain S18.30E−022.88407284AI539227Hs. 214039hypothetical protein FLJ235566.19E−022.86439737AI751438Hs. 41271Homo sapiens mRNA full length insert cDN2.34E−022.83408503AW119059ESTs, Weakly similar to T12552 hypotheti8.30E−022.80419743AW408762Hs. 5957Homo sapiens clone 24416 mRNA sequence8.30E−022.77456727BE350986Hs. 33254hypothetical protein FLJ21817 similar to1.11E−022.75440409AW294316Hs. 125608ESTs3.27E−022.73408891NM_006577Hs. 284284ESTs, Highly similar to beta-1,3-N-acety4.53E−022.70430291AV660345Hs. 238126CGI-49 protein2.34E−022.66410851AW612147Hs. 32058Homo sapiens C1orf19 mRNA, partial cds7.15E−022.65414737AI160386Hs. 125087ESTs3.86E−022.65422744AW268803Hs. 119640hBKLF for basic kruppel like factor5.24E−022.60429867AW204372tomosyn5.19E−022.56431926AW972724gb: EST384816 MAGE resequences, MAGL Homo5.29E−022.55430259BE550182Hs. 127826RalGEF-like protein 3, mouse homolog3.35E−032.54428558AI587502ESTs9.52E−022.53435145AI277259Hs. 116631ESTs2.76E−022.52403436NM_006548*: Homo sapiens IGF-II mRNA-bind8.30E−022.52447698AI420156Hs. 326733ESTs7.15E−022.52407339AA777542Hs. 132670ESTs2.76E−022.50410401AW673335Hs. 259641ESTs2.34E−022.50418481M81945CD34 antigen3.29E−022.50430654AW970081Hs. 325603ESTs8.27E−022.50433102AI343966Hs. 158528ESTs1.13E−022.44442191W95186Hs. 8136endothelial PAS domain protein 13.86E−022.42447384AI377221Hs. 40528ESTs7.15E−022.40430552AA176374Hs. 243886nuclear autoantigenic sperm protein (his6.14E−022.38444811AW137791Hs. 148419ESTs1.64E−022.37435519AI218950Hs. 125461hypothetical protein FLJ115395.29E−022.37435675AA694099Hs. 266820ESTs8.30E−022.36402305C19000735*: gi|4508027|ref|NP_003414.1|z1.12E−022.35438084AW516099Hs. 121925ESTs8.30E−022.32450747AI064821Hs. 318535ESTs, Highly similar to 1818357A EWS gen7.15E−022.32452032BE244005Hs. 27610retinoic acid-and interferon-inducible8.27E−022.25455751BE075281gb: PM1-BT0585-290200-005-d07 BT0585 Homo8.10E−022.21427471AA403131Hs. 266782KIAA1826 protein8.30E−022.20437210AA311443Hs. 293563Homo sapiens mRNA; cDNA DKFZp586E2317 (f6.19E−022.17458025AI275406Hs. 32450gb: ql63c10.x1 Soares_NhHMPu_S1 Homo sapi2.76E−022.17444830AI198854Hs. 145437ESTs6.17E−022.12455086AW855386gb: CM3-CT0275-191099-024-d05 CT0275 Homo8.30E−022.10421904BE143533Hs. 109309hypothetical protein FLJ200354.55E−022.07414395BE304888Hs. 279834EST3.27E−022.02404973Target Exon8.27E−022.01428701NM_013276Hs. 190207carbohydrate kinase-like3.86E−022.01436651BE045962Hs. 275998ESTs1.34E−022.00448959AI610343Hs. 293267ESTs7.12E−022.00Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of non-responders over Trimean of responders Ratio


[0361]

26







TABLE 9B








Pkey
CAT Number
Accession







424017
888651_1
AW966107 AA334317 AA333789


410099
16732_1
AK055674 AW965247 AV751598 AA290926 R53043 AA331387 AK056148 BI917678




BG819395 BG911971 BG820167 AI174254 AA348720




AA364503 BG714279 AW893230 AA081774 H24222 AV727176 BF875715




AA081630 BE000834 AA334880 AL563737 BG029709 W52882




AI439658 BE551237 AA283724 BF109530 AI457096 AI805992 BE467736 AA693467




AI697593 AI887863 AI167419 AW901980 AW901768




BE702179 AA484549 T23811 BE327043 AA716027 AA917004 AA167714 BF339675




AA084618 AI418634 T31586 AA436630 AI366472




AA706191 AI422304 AI204899 AI041169 AA211402 AW827081 AA788593 T32736




AI767935 AA747914 T03534 AW959843 AL119527




BE327037 AW901982 AW993370 AW901977 AW902071 W60090 N79906 D52685




T07735 BE702069 BE702172 T08671 BE767121 BE767117




BE767113


452455
928588_1
BE877195 BG988071 AI902576 N25153 AW518714 N25154


447686
2958543_1
AI939440 AI424128 AI419682


455604
1478710_1
BE011183 BE011324 BE011170 BE011188 BE011181 BE011333 BE011169 BE011161


426101
3211_1
AL049987 BG620667 BG571984 AW362842 BE150456 BE326465




AW872412 AA868553 AI024689 AA442638 AA813604 AA442648 AA663108




AA442379 AA229448 N56349 AA460220 AW971193 AA453725 AI742087




AI860142 AW769479 AI917507 AI860141 BE045272 AW277065




AI921333 AI354470 BE466760 AI827987 AI005467 AA833517 AA563934




AA522837 AA812876 AW020895 AA600372 AA663178 AI187977




AA229164 AW270324 AA703066 T78981 AA632986 BE708493 R31132 AI253986




AI916737 T84796 T84294 AW961515 AI459289 BF109829




BI491853 AI084517 AW103830 BE835233 A1472712 AV741009 AA551512




N28268 AA436880 AA447794 BE835410 BE835385 BE818352




BE818350 R64648 BE646467 AA493776 AA437299 BE818343 R95914 R31089




BF576826 AU186065 BF802058 AI217018 AA247541 AI191725




BE766918


435154
126605_1
AW972063 AA668764 AA804491 AW665688 AA765069


432222
539529_1
BG207209 BE166299 AI204995 BG199355 AW969908 AA528756 AW440776 BI044354


408503
24663_2
NM_054110 BC014789 BI552129 BG896227 BG900557 AY035399 AW119059




BF432376 AW629242 AA971319 AI378176 AI275884 AA236602




BG898257 BG897636 BG900588 AF361251 BG926353 BG714178




AA368180 BG896473 BG715977 BG900230 BG901163 BF342939


429867
1003_2
BE467551 AI214965 AW204372


431926
1237041_1
AW972724 AA877998 AA522631 AU185388


428558
1382530_1
AA430150 AA888768 AI587502


418481
17381_1
S53911 NM_001773 AL572644 AL550179 AI688653 AW025002 AW614285




AU158779 AI017002 AA434387 AI252665 AI262206 AU147582




AI144193 AW952860 AI128776 AI017793 AI160509 AA906021 AI149563




AU154950 AI128488 W74409 AI970362 AI141453 AU158772 W58493




BM148338 R73091 AW020496 BI491517 AA022917 AI432610 AI879448




R69099 AI708954 AW014274 AA483672 AA528783 AA912271




AI926942 BE677587 AI874217 AA152376 AA640408 AI287334 BF830285




AA311473 C18678 AA922603 C00910 AI124073 R38730 AA043439




W94644 W58646 AA664247 BE061934 H01096 R69613 AI383162 AU133723




AA311526 R67942 H01097 H72113 R72430 R39494 AV744074




AA535925 BI759288 BI052385 BF854687 AW608286 AA043438 R72478




AL513811 R69214 AA188435 AA054965


455751
1497052_1
BE075281 BE075119 BE075123 BE075219 BE075046


455086
1095746_1
AW855553 AW855417 AW855386






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0362] Table 10A lists about 149 genes up-regulated in Hepatitis C positive liver tissues from patients that are responsive to pegylated-interferon-alpha plus ribavirin treatment (responders) compared to Hepatitis C positive liver tissues from patients that are not responsive to the treatment (non-responders). In both cases, the liver biopsies were obtained prior to treatment. The 149 genes have the potential to be diagnostics and/or prognostic markers for determining the responsiveness of Hepatitis C infected liver tissues to pegylated-interferon-alpha plus ribavirin treatment. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the Wilcoxon rank-sum test p-value between the 2 groups was less than 0.10, the ratio of the “weighted average” of responders to the “weighted average” of non-responders was equal to or above 2.0, and that the differences between the same 2 groups was equal to or above 30.0. The “weighted average” of the responders was set to the trimean of several different responders. The “weighted average” of the non-responders was set to the either 10 or the trimean of several different non-responders, whichever value was greater to eliminate ratios with a denominator of zero or less.
27TABLE 10APkeyExAccnUniGeneUnigene TitleR1R2400301X03635Hs. 1657estrogen receptor 15.11E−038.42440700AW952281Hs. 296184guanine nucleotide binding protein (G pr1.63E−026.41421911AL041520gb: DKFZp434G2317_s1 434 (synonym: htes3)3.27E−025.67400302N48056Hs. 283946folate hydrolase (prostate-specific memb2.34E−025.61414559AV656184Hs. 76452C-reactive protein, pentraxin-related3.86E−025.60418363AA218628Hs. 202977ESTs8.30E−025.50427450AB014526Hs. 178121KIAA0626 gene product1.63E−025.29404354Target Exon1.64E−025.05436674AA725002Hs. 272018low molecular mass ubiquinone-binding pr8.30E−025.00455191AW864547gb: PM4-SN0016-120500-003-b12 SN0016 Homo6.17E−024.90415374F06904Hs. 8346ESTs6.19E−024.83404483C8000657*: gi|1504040|dbj|BAA13219.1|(D81.13E−024.77444813AW054834Hs. 210356ESTs8.30E−024.77401197ENSP00000229263*: HSPC213.8.27E−024.75449959AI076834Hs. 21160ESTs2.76E−024.60444402AL138436Hs. 49359hypothetical protein DKFZp547E0522.30E−024.57451898T92572Hs. 142019ESTs, Weakly similar to 1207289A reverse1.64E−024.55457231AI472022Hs. 301959praline synthetase co-transcribed (bacte4.55E−024.52413303AW836130Hs. 75277hypothetical protein FLJ39108.20E−024.40435147AL133731Hs. 4774Homo sapiens mRNA; cDNA DKFZp761C1712 (f6.19E−024.40442552R20624son of sevenless (Drosophila) homolog 16.19E−024.40401635C11000702: gi|10048448|ref|NP_065258.1|g9.52E−024.27430048T65054Hs. 73605ESTs8.27E−024.27406570NM_024889*: Homo sapiens hypothetical pro2.34E−024.17433122AB019391Hs. 58049ESTs7.15E−024.13431940H06075Hs. 270232ESTs3.35E−034.07411047AW938479gb: CM0-DT0057-290200-253-h06 DT0057 Homo8.27E−024.04403609C3001199: gi|7494834|pir||T15308 hypothet3.29E−024.00430165AW849764Hs. 314330ESTs3.25E−024.00443935NM_000236Hs. 9994lipase, hepatic9.52E−023.98458875AA814517Hs. 321775hypothetical protein DKFZp434D14281.13E−023.96403686C4001366*: gi|9837427|gb|AAG00570.1|AF2875.29E−023.95403767Target Exon7.15E−023.95401114Target Exon4.55E−023.89412286AW935866gb: QV3-DT0019-120100-055-b04 DT0019 Homo2.33E−023.88417505T73280Hs. 193228alanine-glyoxylate aminotransferase 26.19E−023.85440798AB020648Hs. 7426KIAA0841 protein3.29E−023.85403743C1002604: gi|8393668|ref|NP_058989.1|kin8.30E−023.81429031BE002237Hs. 239666Homo sapiens cDNA FLJ13495 fis, clone PL6.17E−023.79453815AL135365Hs. 126857Homo sapiens cDNA FLJ12936 fis, clone NT3.29E−023.77423983AA333261gb: EST37476 Embryo, 8 week 1 Homo sapien4.55E−023.75405206Target Exon7.12E−023.72425057AA826434Hs. 1619achaete-scute complex (Drosophila) homol4.55E−023.72446847T51454Hs. 82845Homo sapiens cDNA: FLJ21930 fis, clone H4.55E−023.71414535W27834Hs. 333417capping protein (actin filament) muscle8.13E−023.70456250U09196Hs. 82520polymerase (DNA-directed), delta 49.52E−023.69446885T74107Hs. 122613ESTs2.31E−023.67409313NM_001325Hs. 693cleavage stimulation factor, 3′pre-RNA,2.33E−023.65441159AI198604Hs. 126682ESTs4.53E−023.63422519AA347877Hs. 122730ESTs5.29E−023.63435545AA687415Hs. 28107ESTs1.12E−023.63439910H66765Hs. 339397ESTs2.34E−023.55458991AI743502gb: wf63h12.x2 Soares_NFL_T_GBC8.30E−023.54S1 Homo s403789NM_001334*: Homo sapiens cathepsin O (CTS8.30E−023.52433156R59206Hs. 17519Homo sapiens cDNA: FLJ22539 fis, clone H3.29E−023.52404902NM_025213: Homo sapiens spectrin, beta, n5.29E−023.50436499AJ276678Hs. 283102HEF like Protein5.29E−023.50424092AI085286Hs. 133476ESTs6.19E−023.38458443AV647010Hs. 27glycine dehydrogenase (decarboxylating;1.63E−023.35446681AJ003624Hs. 15896kendrin4.55E−023.32401778MCT-1 protein8.30E−023.25402244C19000767*: gi|4508027|ref|NP_003414.1|z6.19E−023.23419287X91906Hs. 89872chloride channel 5 (nephrolithiasis 2, X1.64E−023.22405543C2002468*: gi|3334856|emb|CAA11279.1|(AJ8.17E−023.20429624AA458648Hs. 99476ESTs, Weakly similar to 1313184B alpha 18.27E−023.18453751R36762Hs. 101282Homo sapiens cDNA: FLJ21238 fis, clone C4.55E−023.17404511NM_004349: Homo sapiens core-binding fact1.35E−023.13445159AI631036Hs. 196843ESTs3.27E−023.10457565BE294029Hs. 279903Ras homolog enriched in brain 23.29E−023.10404717NM_007313*: Homo sapiens v-abl Abelson mu6.19E−023.07403920suppressor of potassium transport defect3.29E−023.07445664AW968638Hs. 237691ESTs, Weakly similar to KIAA0601 protein5.27E−023.05403442Target Exon6.19E−023.02436336AJ011378ESTs4.41E−023.00446783AW138343Hs. 141867ESTs1.64E−022.97451790AA927403Hs. 3803reticulon 28.30E−022.96427958AA418000Hs. 98280potassium intermediate/small conductance1.62E−022.92430989AB009249Hs. 248192fibroblast growth factor 178.27E−022.91425744AA362985gb: EST72769 Ovary II Homo sapiens cDNA 58.30E−022.91419511AA429750Hs. 75113general transcription factor IllA4.55E−022.89446001AI827473ESTs6.19E−022.88442602R46488Hs. 187497ESTs4.50E−022.85443589H52931Hs. 165067ESTs8.27E−022.85457142AI924353Hs. 290969EST7.59E−032.83404956C1003210*: gi|6912582|ref|NP_036524.1|pe3.27E−022.83426181AA371422Hs. 334371hypothetical protein MGC130966.19E−022.83454086AW885909Hs. 279789PRO1073 protein6.19E−022.82450770AA019924Hs. 28803ESTs8.30E−022.81452357AI638176Hs. 283865ESTs6.19E−022.80456758AA325170Hs. 224627ESTs, Weakly similar to FAHUAA alpha-act6.17E−022.79409959BE349470mucin 6, gastric1.11E−022.77417674R07915Hs. 20039ESTs6.19E−022.75446548AI769392Hs. 200215ESTs8.30E−022.75407988N47760Hs. 285107hypothetical protein FLJ133979.24E−032.70435236T03890Hs. 157208ESTs, Highly similar to ARX MOUSE HOMEOB9.52E−022.69447090AI361114Hs. 270711ESTs7.59E−032.67451068AW294432Hs. 144252ESTs3.29E−022.63431668AW969610Hs. 151179ESTs3.29E−022.63449000U69560Hs. 3826kelch-like protein C3IP19.17E−032.63443832AI829610Hs. 23531ESTs8.27E−022.62405481Target Exon7.15E−022.60438922R71288Hs. 259664ESTs4.53E−022.60402168NM_022046*: Homo sapiens kallikrein 14 (K1.95E−022.59444280AI380835Hs. 148505ESTs3.27E−022.58435471AA682544ESTs4.55E−022.58452137AI861840Hs. 211687ESTs2.76E−022.58424049AB014524Hs. 138380KIAA0624 protein1.62E−022.55418154BE165866nuclear receptor subfamily 1, group I, m6.19E−022.52447113AA741545Hs. 282832ESTs, Weakly similar to T24961 hypotheti1.13E−022.50439389AA318940Hs. 56004ESTs3.77E−022.48442049AA310393Hs. 190044ESTs7.15E−022.47445119AF035121Hs. 12337kinase insert domain receptor (a type II1.12E−022.47454341AI654712Hs. 54424hepatocyte nuclear factor 4, alpha4.48E−022.45420028AB014680Hs. 8786carbohydrate (N-acetylglucosamine-6-O) s4.55E−022.45420556AA278300Hs. 124292Homo sapiens cDNA: FLJ23123 fis, clone L6.19E−022.45456558BE410992Hs. 258730heme-regulated initiation factor 2-alpha6.17E−022.45423954AW753164Hs. 288604KIAA1632 protein8.30E−022.43450565T72234Hs. 193228alanine-glyoxylate aminotransferase 25.29E−022.40446068AL049801Hs. 13649Novel human gene mapping to chomosome 135.27E−022.39419662W87674gb: zh66a01.r1 Soares_fetal_liver_spleen1.55E−022.38432547BE350533Hs. 306418Homo sapiens cDNA FLJ10958 fis, clone PL6.19E−022.38403440Target Exon4.55E−022.37407625AA148766Hs. 293885hypothetical protein FLJ149022.33E−022.35415770M79237gb: EST01385 Subtracted Hippocampus, Stra7.59E−032.34433224AB040919Hs. 210958KIAA1486 protein4.53E−022.32421573AI302850Hs. 262455ESTs5.29E−022.30459283NM_016940Hs. 34136chromosome 21 open reading frame 64.55E−022.26424602AK002055Hs. 151046hypothetical protein FLJ111938.30E−022.25406180small inducible cytokine subfamily A (Cy3.29E−022.24404810Target Exon8.30E−022.24457841AI678031Hs. 122813ESTs, Weakly similar to ZN22_HUMAN ZINC8.30E−022.24458492AI143655ESTs2.76E−022.22443708AI082689Hs. 63970ESTs2.31E−022.21444758AL044878Hs. 118993-hydroxy-3-methylglutaryl-Coenzyme A re8.30E−022.21454302AA306105Hs. 50785SEC22, vesicle trafficking protein (S. c5.29E−022.20456400W28090gb: 41h3 Human retina cDNA randomly prime6.19E−022.20408568AW448965Hs. 270087ESTs, Weakly similar to I39295 X-linked8.30E−022.18444073H68409Hs. 38715ESTs8.27E−022.15404437C1000815: gi|9653274|gb|AAF27628.2|AF21758.30E−022.14453315BE544203Hs. 24831ESTs6.19E−022.13408931AA251995Hs. 334648poly(A) polymerase alpha8.30E−022.10433444AW975324Hs. 129816ESTs4.55E−022.09446226AW889132Hs. 11916ribokinase4.55E−022.08452266AI767250Hs. 201446ESTs8.30E−022.05436869NM_014867Hs. 5333KIAA0711 gene product3.86E−022.04433906AI167816Hs. 43355ESTs5.29E−022.02402370Target Exon8.30E−022.02434306AW081757Hs. 44241Homo sapiens cDNA: FLJ21447 fis, clone C6.19E−022.01422721R41154Hs. 275711hypothetical protein MGC24526.19E−022.01Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: Wilcoxon rank-sum test p-value R2: Trimean of responders over Trimean of non-responders Ratio


[0363]

28







TABLE 10B








Pkey
CAT Number
Accession







421911
863300_1
AL041520 AA300086


455191
1107840_1
AW864356 AW864547 AW864277 AW864496


442552
3248_3
BE566571 BE143063 BF367361 AW954369 AA412572 W95547 BE005367




AA374200 AI769772 AA809852 AI918702 AW025682 AI272033




AA713679 AI638383 Al364631 AW518885 N51823 AA256588 N47774 BE707161




BF980035 AI628605 AW292949 BE350976 AW263078 AI885558




AI261878 BE671974 N51071 AI695006 BM264289 BG055084 AI922512 AA633530 BM263987




N56889 AW075473 BE700841 AW023886 BF527967




AW591478 BE669905 N51720 AA806021 AA846566 W95290 AI453800 AI783684 AI417702 AW086132




BE552047 AA227699 AW076131 AI126790




AI654491 H01465 BF437982 AA400937 R20624 BF825527 H02691 W56480 BF944773




R21195 R82844 H02596 BE243273 H50040


411047
1067666_1
AW850678 AW938479 AW814826


412286
210181_1
AW935866 BE069200 BF838900 BG989737 BG989811 BF833185 BF837808


423983
888204_1
AA333365 AA552870 AA333261


458991
3076691_1
AI743502 AI807438


436336
53728_1
AJ011378 AA416944 AA469902 AI015437


425744
320952_2
AW963337 AA362985 T27244


446001
647827_1
AI827473 AW510751 AW182908 AI269760


409959
2781_3
AW513804 BE179199 BE179195 BE179198 BE179204 BE162686


435471
131589_1
AA682544 AI248010 AA703577


418154
23972_1
X56199 AU119734 AW967136 W38705 W90159 AW444647 BF094079




BE694692 AA339496 AA029093 BG925977 AA401072 AA348138 N90874




BF055081 BF111983 BF091812 AI399764 BE931041 BF999882 BF352250




BI049436 AA010244 AW374411 H52942 BF364437 AL538880




AU137031 BE218742 BE175700 BE708041 AV651847 AV649491 AV649227




AV649164 AV698455 AV651656 M78602 BF910285 AA333298 H75493




AA332039 BM463335 AL603109 BF753137 BF083242 AI309717 AI349651




BE174377 AW361207 BE159533 AL603126 BI003025 AA319706




AW903950 AU118470 AU135122 AI811901 AA401166 BE165866 BE165832




AA319621 BF749419 AI903726 BE833899 BI061305 BI061311 H78857




BF912227 BF912224 AV747164 AA126644 W17094 T05342 AW374665 AA091968




AA095633 BI009746 AL038020 BE010083 BE008038 BF808424




BE010133 BF364245 BF328029 BE010189 AW903901 AW844209 AW879041 AL037999




AV690829 AV693074 AV693056 AV690862 BE159515




BE074613 AW905394


419662
2431548_1
W87872 W87674 W87774


415770
2051914_1
AA169260 AI267298 M79237


458492
2797412_1
AI869287 AI143655


456400
2391890_1
W27943 W28090






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0364]

29








TABLE 10C








Pkey
Ref
Strand
Nt_position







404354
7630858
Minus
115516-115702


404483
8096904
Minus
162212-163710


401197
9719705
Plus
176341-176452


401635
7145001
Minus
51895-52764


406570
3983519
Minus
88469-88570


403609
8308266
Minus
125974-126320


403686
7387348
Minus
66625-68364


403767
7767782
Plus
142903-143081


401114
9966554
Plus
52327-53385


403743
7652003
Minus
136463-136646


405206
6692345
Plus
17807-18338, 20430-20538


403789
8084957
Minus
64056-64148, 65262-65425


404902
7331453
Plus
36243-36358


401778
7249133
Minus
136881-137147, 137499-137628,





137858-13814


402244
7690152
Plus
36938-38272


405543
9857582
Minus
104338-104449


404511
8151864
Minus
148501-148659


404717
9838068
Minus
165900-166052, 169415-169599,





171430-17160


403920
7710868
Plus
40312-40490


403442
7210003
Plus
174560-175270


404956
7387343
Plus
55883-56203


405481
3688109
Plus
5718-5837, 8719-8818


402168
7458725
Minus
43245-43397


403440
9743372
Minus
34592-34661, 41940-42100


406180
7283201
Minus
38923-39107


404810
3702433
Minus
65278-65642


404437
5354481
Minus
17773-17938, 20263-20429


402370
9558580
Minus
14525-15733






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham. et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0365] Table 11A lists about 2410 genes up-regulated in Hepatitis C positive liver tissues compared to Hepatitis C negative liver tissues. These genes have the potential to be diagnostics and/or prognostic markers for Hepatitis C infected liver tissues. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the t-test p-value between the Hepatitis C positive liver tissues group and the Hepatitis C negative liver tissues was less than 0.01, and that the differences between the average “standardized values” of the different Hepatitis C positive liver tissues was equal to or above 1.0 more than the average standardized values of the different Hepatitis C negative liver tissues. The “standardized values” of the Hepatitis C liver tissues were derived by subtracting the median of the several different Hepatitis C negative liver tissue values from each probeset value, then divided by the interquantile range (IQR) of the same Hepatitis C negative liver tissue values.
30TABLE 11 APkeyExAccnUnigeneIDUnigene TitleR1R2413278BE563085Hs. 833interferon-stimulated protein, 15 kDa1.24E−1013.42447164AF026941Hs. 17518vipirin; similar to inflammatory respon1.68E−0711.03426312AF026939Hs. 181874interferon-induced protein with tetratri8.68E−109.84431629AU077025Hs. 265827interferon, alpha-inducible protein (clo9.17E−139.06422596AF063611Hs. 1186332′-5′-oligoadenylate synthetase−like4.59E−098.28426711AA383471Hs. 343800conserved gene amplified in osteosarcoma3.15E−156.94427579AA366143Hs. 179669hypothetical protein FLJ206374.05E−096.76409461AA382169Hs. 54483N-myc (and STAT) interactor5.26E−126.61453779N35187Hs. 4338828 kD interferon responsive protein1.47E−116.48418396AI765805Hs. 26691ESTs4.41E−086.33433364AI075407Hs. 296083ESTs, Moderately similar to I54374 gene2.97E−156.27414404W16712KIAA0306 protein1.42E−066.25455705AW161061ESTs, Weakly similar to zinc finger prot5.43E−116.24430478NM_014349Hs. 241535apolipoprotein L, 33.88E−176.09413880AI660842Hs. 110915interleukin 22 receptor5.13E−055.91417621AV654694Hs. 82316interferon-induced, hepatitis C-associat2.55E−125.55432680T47364Hs. 278613interferon, alpha-inducible protein 272.59E−155.35418622AW971960Hs. 236456ESTs, Weakly similar to A46010 X-linked9.09E−045.26448569BE382657Hs. 21486signal transducer and activator of trans1.56E−155.00421379Y15221Hs. 103982small inducible cytokine subfamily B (Cy9.16E−094.97414004AA737033Hs. 7155ESTs, Moderately similar to 2115357A TYK3.33E−104.73414760BE298063Hs. 77254chromobox homolog 1 (Drosophila HP1 beta3.99E−104.66446217AI651594Hs. 99709ESTs2.36E−094.63431620AA126109Hs. 2649812′-5′-oligoadenylate synthetase 2 (69-714.54E−124.57414737AI160386Hs. 125087ESTs4.78E−064.43421904BE143533Hs. 109309hypothetical protein FLJ200352.86E−104.36402994NM_002463*: Homo sapiens myxovirus (influ7.92E−054.29428467AK002121Hs. 184465hypothetical protein FLJ112592.14E−044.28409703NM_006187Hs. 560092′-5′-oligoadenylate synthetase 3 (100 k4.28E−144.25438154AI671957Hs. 19523Homo sapiens clone 022f05 My030 protein6.70E−094.13437938AI950087gb: wq05c02.x1 NCI_CGAP_Kid12 Homo sapien1.51E−084.08432204AI916132Hs. 121593Homo sapiens cDNA FLJ13123 fis, clone NT6.22E−094.07406659AA663985Hs. 277477major histocompatibility complex, class1.50E−064.06406621X57809Hs. 8997immunoglobulin lambda locus1.85E−044.03414915NM_002462Hs. 76391myxovirus (influenza) resistance 1, homo2.02E−124.03435665AI248952Hs. 12320ESTs3.98E−074.01442700AA377618Hs. 103834hypothetical protein MGC55762.54E−073.96410240AL157424Hs. 61289synaptojanin 27.09E−063.95447747AW853144Hs. 49203ESTs1.01E−033.88452194AI694413Ubiquitin-like protein FAT10??? - diubiq4.53E−083.85409614BE297412Hs. 55189hypothetical protein1.22E−083.85419071AL137330Hs. 301055hypothetical protein DKFZp434F02727.16E−063.80427283AL119796Hs. 174185ectonucleotide pyrophosphatase/phosphodi6.28E−073.78437834AA769294gb: nz36g03.s1 NCI_CGAP_GCB1 Homo sapiens9.13E−063.75419200AW966405prefoldin 51.36E−093.75419150T29618Hs. 89640TEK tyrosine kinase, endothelial (venous8.23E−043.74434210AA665612ESTs2.80E−103.73427094AB025254Hs. 283761tudor repeat associator with PCTAIRE 23.92E−103.71407151H25836Hs. 301527ESTs, Moderately similar to unknown [H. s1.13E−093.69427562R56424Hs. 134191ESTs1.84E−063.67452690AI536070Hs. 15085ESTs5.53E−053.64416126R66415gb: yh01a04.s2 Soares infant brain 1NIB H7.65E−033.64442439U09759Hs. 246857mitogen-activated protein kinase 91.51E−073.62443378AW392550Hs. 9280proteasome (prosome, macropain) subunit,4.69E−103.62419550D50918Hs. 90998KIAA0128 protein; septin 22.13E−103.57451578NM_016323Hs. 26663cyclin-E binding protein 11.88E−083.54419438AA406400Hs. 12482glyceronephosphate O-acyltransferase2.63E−043.53409899U07418Hs. 57301mutL (E. coli) homolog 1 (colon cancer,7.69E−053.51441423AI793299Hs. 126877ESTs4.67E−063.50409153W03754Hs. 50813hypothetical protein FLJ200229.52E−063.50448128U71267Hs. 20423CCR4-NOT transcription complex, subunit5.13E−093.48409893AW247090Hs. 57101minichromosome maintenance deficient (S.1.21E−063.48444342NM_014398Hs. 10887similar to lysosome-associated membrane7.46E−093.43406906Z25424gb: H. sapiens protein-serine/threonine ki5.22E−053.42409512AW979187Hs. 293591melanoma differentiation associated prot7.83E−133.41416844AA299330Hs. 1042Sjogren syndrome antigen A1 (52 kD, ribon3.64E−083.40446452AB018283Hs. 15099KIAA0740 gene product3.88E−073.39448111AA053486Hs. 20315interferon-induced protein with tetratri3.07E−113.39400244Eos Control1.17E−093.36433409AI278802Hs. 25661ESTs2.37E−033.33408411C15118Hs. 322482hypothetical protein DKFZp566J20462.97E−083.31408393AW015318Hs. 23165ESTs6.98E−083.29439971W32474Hs. 301746RAP2A, member of RAS oncogene family1.02E−083.28453023AW028733Hs. 31439serine protease inhibitor, Kunitz type,7.29E−063.27428706AA432030Hs. 265827interferon, alpha-inducible protein (clo1.46E−083.26424865AF011333Hs. 153563lymphocyte antigen 752.38E−063.22422598W93032Hs. 325568ESTs, Weakly similar to A46010 X-linked9.27E−13322423436R21176Hs. 100926ESTs2.71E−033.21418918X07871Hs. 89476CD2 antigen (p50), sheep red blood cell3.03E−093.20438769AA830684Hs. 163426ESTs4.96E−053.19458379T78886Hs. 284450ESTs2.70E−053.17426572AB037783Hs. 170623hypothetical protein FLJ111831.66E−033.15419257X53461Hs. 89781upstream binding transcription factor, R7.32E−073.13422746NM_004484Hs. 119651glypican 37.65E−063.13427657AV652249Hs. 180107polymerase (DNA directed), beta7.44E−123.10433679AA393968Hs. 180145HSPC030 protein2.98E−043.09418838AW385224Hs. 35198ectonucleotide pyrophosphatase/phosphodi3.18E−063.07417678X06560Hs. 823962′,5′-oligoadenylate synthetase 1 (40-461.67E−093.06428227AA321649Hs. 2248small inducible cytokine subfamily B (Cy3.03E−123.06408989AW361666Hs. 49500KIAA0746 protein1.59E−063.03410340AW182833Hs. 112188hypothetical protein FLJ131493.80E−053.03417389BE260964Hs. 82045midkine (neurite growth-promoting factor3.24E−073.01423461AB020527Hs. 128827solute carrier family 17 (sodium phospha3.52E−063.00411837AW866282gb: QV4-SN0024-080400-167-a03 SN0024 Homo1.26E−033.00427528AU077143Hs. 179565minichromosome maintenance deficient (S.1.35E−062.99420058AK001423Hs. 94694Homo sapiens cDNA FLJ10561 fis. clone NT1.16E−062.99432967AA572949Hs. 207566ESTs2.85E−032.98415653AA165400Hs. 5321hypothetical protein R33729_11.33E−042.95419329AY007220Hs. 288998S100-type calcium binding protein A141.31E−042.94450937R49131Hs. 26267ATP-dependant interferon response protei1.74E−082.93414617AI339520Hs. 288817ESTs, Moderately similar to N Chain N, M5.82E−052.92450236AW162998Hs. 24684KIAA1376 protein1.00E−032.91413179N99692Hs. 75227Target CAT2.78E−032.90436746AA730045Hs. 187866ESTs1.29E−052.89448879Z44154Hs. 22394hypothetical protein FLJ108933.34E−062.88414052AW578849Hs. 283552ESTs, Weakly similar to unnamed protein7.88E−082.87408080AW149754Hs. 248652ESTs, Weakly similar to T00273 hypotheti5.99E−072.87406990S82075gb: PA4 = candidate oncogene {3′region} [h1.14E−052.86409444H47933Hs. 33983ESTs, Weakly similar to ALU6_HUMAN ALU S6.32E−052.85453883AI638516Hs. 347524cofactor required for Sp1 transcriptiona3.20E−092.85434130AL036067Hs. 18925protein x 00014.32E−052.84408510AA731642Hs. 285017hypothetical protein FLJ217998.74E−062.84409231AA446644Hs. 692GA733-2 antigen; epithelial glycoprotein1.04E−042.83448465AW500269Hs. 21264KIAA0782 protein8.90E−032.83422440NM_004812Hs. 116724aldo-keto reductase family 1, member B101.65E−032.83432378AI493046Hs. 146133ESTs5.01E−072.82432279N95104Hs. 274260ATP-binding cassette, sub-family C (CFTR8.30E−082.81443119AA312264Hs. 7980hypothetical protein MGC129666.95E−062.80402264NM_020657*: Homo sapiens zinc finger prot4.15E−042.75422112BE540240Hs. 111783Lsm1 protein3.36E−062.74422553AI697720Hs. 171455ESTs, Weakly similar to T31613 hypotheti2.97E−052.74432401NM_013330Hs. 274479NME75.36E−052.73442607AA507576Hs. 288361Homo sapiens cDNA: FLJ22696 fis, clone H4.35E−052.73448550AL161983Hs. 21415Homo sapiens mRNA; cDNA DKFZp761K2024 (f2.37E−062.73439237AW408158Hs. 318893ESTs, Weakly similar to A47582 B-cell gr5.16E−082.73417308H60720Hs. 81892KIAA0101 gene product3.87E−072.71433489AW629150ESTs2.41E−042.68433437U20536Hs. 3280caspase 6, apoptosis-related cysteine pr1.32E−072.67452327AK000196Hs. 29052hypothetical protein FLJ201891.23E−062.67447880AA214240Hs. 301226KIAA1085 protein6.35E−082.65430308BE540865Hs. 238990cyclin-dependent kinase inhibitor 1B (p25.39E−082.65431967AJ243653Hs. 283404organic cation transporter6.95E−032.62425342AA534073Hs. 155751voltage-dependent anion channel 32.81E−052.61441737X79449Hs. 7957adenosine deaminase, RNA-specific1.72E−102.61431939AW008061Hs. 231994ESTs1.34E−042.60456463AA380180Hs. 56896ESTs3.87E−032.60407756AA116021Hs. 38260ubiquitin specific protease 181.46E−112.59411060NM_006074Hs. 318501Homo sapiens mRNA full length insert cDN1.27E−122.58435839AF249744Hs. 25951Rho guanine nucleotide exchange factor7.50E−032.57413431AW246428Hs. 75355(ubiquitin-conjugating enzyme E2N (homolo4.19E−032.57411605AW006831ESTs1.58E−04257423545AP000692Hs. 129781chromosome 21 open reading frame 57.99E−042.57453917BE297466Hs. 36587protein phosphatase 1, regulatory subuni1.90E−062.57429680AL035754Hs. 2474toll-like receptor 19.61E−062.56449718AA459480Hs. 23956hypothetical protein FLJ205026.31E−072.56433163R40468Hs. 163582ESTs1.53E−032.56423753Y11312Hs. 132463phosphoinositide−3-kinase, class 2, beta1.90E−052.55419082AW953977Hs. 78825matrin33.07E−052.54450698W31489Hs. 95044ESTs, Weakly similar to I38022 hypotheti8.19E−052.54447400AK000322Hs. 18457hypothetical protein FLJ203151.76E−102.54426172AA371307Hs. 125056ESTs9.68E−062.54431685AW296135Hs. 267659vav 3 oncogene1.05E−062.54423617AA741058Hs. 20065ESTs3.05E−062.54413670AB000115Hs. 75470hypothetical protein, expressed in osteo6.06E−082.53449613N63808Hs. 34299ESTs4.88E−062.53432388X15218Hs. 2969v-ski avian sarcoma viral oncogene homol2.62E−042.51416795AI497778Hs. 20509HBV pX associated protein-87.52E−052.51409259AW608930Hs. 52184hypothetical protein FLJ206181.37E−092.51435017AA336522Hs. 12854angiotensin II, type I receptor-associat1.94E−082.51420292AW991781gb: QV2-BN0007-280300-104-d06 BN0007 Homo3.31E−032.51410582AW867197Hs. 337561hypothetical protein FLJ216165.40E−072.50449478AA829848Hs. 193059ESTs3.55E−032.50409346AL162066Hs. 54320hypothetical protein DKFZp762D0966.84E−082.50418416U11700Hs. 84999ATPase, Cu transporting, beta polypeptid3.76E−082.49448570AI923944Hs. 30913ESTs8.37E−062.47418476AA648431Hs. 37883hypothetical protein PNAS-1316.13E−052.46432710AA609685Hs. 278672membrane component, chromosome 11, surfa8.84E−082.45442679R53718hypothetical protein FLJ106592.05E−072.45416309R84694Hs. 79194cAMP responsive element binding protein6.20E−062.45424090X99699Hs. 139262XIAP associated factor-11.47E−062.44448901AK001021Hs. 22505hypothetical protein FLJ101591.09E−082.44429635AW968360Hs. 14355Homo sapiens cDNA FLJ13207 fis, clone NT2.80E−032.44422173BE385828Hs. 250619phorbolin-like protein MDS0192.07E−082.44439708AI761369Hs. 59584hypothetical protein FLJ211444.54E−052.43449239T24653Hs. 23360likely ortholog of yeast ARV11.44E−062.43441327AK001706Hs. 7778hypothetical protein FLJ107511.41E−072.43407366AF026942Hs. 17518gb: Homo sapiens cig33 mRNA, partial sequ7.03E−062.43412898AI129903Hs. 74669vesicle-associated membrane protein 5 (m1.35E−042.42452355N54926Hs. 29202G protein-coupled receptor 341.31E−052.42446526H89616Homo sapiens cDNA FLJ13357 fis, clone PL9.78E−042.42421915AW207000Hs. 126857Homo sapiens cDNA FLJ12936 fis, clone NT7.84E−062.41443486NM_003428Hs. 9450zinc finger protein 84 (HPF2)4.22E−032.40457465AW301344Hs. 122908DNA replication factor1.19E−042.40439718AA307634Hs. 6650vacuolar protein sorting 45B (yeast homo6.66E−082.40440874NM_003188Hs. 7510mitogen-activated protein kinase kinase5.30E−052.40420137AA306478Hs. 95327CD3D antigen, delta polypeptide (TiT3 co1.30E−052.40429164AI688663Hs. 116586ESTs4.14E−042.40427484N32859Hs. 37288nuclear receptor subfamily 1, group D, m1.58E−072.39413815AL046341Hs. 75562discoidin domain receptor family, member5.22E−042.39452835AK001269Hs. 30738hypothetical protein FLJ104072.27E−092.39414669Z83850Hs. 76838serine (or cysteine) proteinase inhibito2.67E−132.39409154U72882Hs. 50842interferon-induced protein 352.65E−092.39420952AA282067Hs. 88972ESTs, Moderately similar to A46010 X-lin8.44E−042.39416068R45985Hs. 115175sterile-alpha motif and leucine zipper c2.72E−032.38450607AL050373Hs. 25213hypothetical protein2.15E−062.38421040AA715026Hs. 135280ESTs1.18E−062.38450206AI796450Hs. 201600ESTs4.49E−062.38426805AB032945Hs. 172506myosin VB8.69E−052.37436436AI417516Hs. 202091ESTs6.37E−042.37428928BE409838Hs. 194657cadherin 1, type 1, E-cadherin (epitheli3.30E−072.37414489AI620677Hs. 73105ESTs3.01E−082.37443854AI089079Hs. 135214hypothetical protein FLJ128003.53E−052.36402424NM_024901: Homo sapiens hypothetical prot1.01E−052.36451752AB032997KIAA1171 protein1.18E−142.36435458F11872Hs. 4892Homo sapiens clone 24841 mRNA sequence2.25E−032.36428180AI129767Hs. 182874guanine nucleotide binding protein (G pr2.38E−052.35448760AA313825Hs. 323583AD036 protein1.47E−072.35425235AA353113Hs. 112497Homo sapiens cDNA: FLJ22743 fis, clone H2.65E−062.34404649Target Exon1.06E−082.34420174AI824144Hs. 199749ESTs5.79E−072.34423258L13460Hs. 1644cytochrome P450, subfamily VIIA (cholest1.20E−052.34444324AI301330Hs. 143838ESTs3.55E−052.33414283AW960011Hs. 154993ESTs1.70E−072.33412802U41518Hs. 74602aquaporin 1 (channel-forming integral pr5.06E−042.33425375AA631977Hs. 155995KIAA0643 protein4.34E−052.33428514AW236861Hs. 193139ESTs6.38E−092.32423645AI215632Hs. 147487ESTs5.17E−062.32448222AI648587Hs. 20725Mov10 (Moloney teukemia virus 10, mouse)7.56E−062.31422633X56832Hs. 118804enolase 3, (beta, muscle)2.83E−092.31429756AB022663Hs. 215857ring finger protein 142.40E−072.31428342AI739168Homo sapiens cDNA FLJ13458 fis, clone PL5.59E−062.31421246AW582962Hs. 102897CGI-47 protein1.36E−062.30442821BE391929Hs. 8752transmembrane protein 47.86E−062.30410541AA065003Hs. 64179syntenin-2 protein2.03E−032.29441872BE567100Hs. 154938hypothetical protein MDS0252.15E−092.29423804AW403448Hs. 16725interferon-stimulated transcription fact3.25E−072.28411049AW814885Hs. 19553ESTs6.16E−052.28426272AW450671Hs. 189284ESTs6.41E−062.28440975AW499914Hs. 7579hypothetical protein FLJ104026.22E−072.28447651T60407Hs. 217882ESTs, Moderately similar to ALU1_HUMAN A5.50E−082.28410577X91911Hs. 64639glioma pathogenesis-related protein8.61E−072.27433309AA807060Hs. 126558ESTs2.10E−032.26447973AB011169Hs. 20141similar to S. cerevisiae SSM41.75E−062.26426437BE076537Hs. 169895ubiquitin-conjugating enzyme E2L 61.56E−092.26452744AI267652Hs. 246107Homo sapiens mRNA; cDNA DKFZp434E082 (fr4.59E−112.25418452BE379749Hs. 85201C-type (calcium dependent, carbohydrate-4.78E−112.25420245AA256902Hs. 252433Homo sapiens cDNA FLJ13794 fis, clone TH4.55E−052.24431677AK000496Hs. 306989hypothetical protein FLJ204892.67E−052.24421902BE392717gb: 601307571F1 NIH_MGC_44 Homo sapiens c1.28E−042.24413869NM_000878Hs. 75596interleukin 2 receptor, beta2.47E−072.24443787AV646505Hs. 122155ESTs5.12E−042.24427581NM_014788Hs. 179703KIAA0129 gene product1.27E−102.23416224NM_002902Hs. 79088reticulocalbin 2, EF-hand calcium bindin1.37E−072.23405533Target Exon1.20E−042.23402230Fgenesh predicted: CYTOCHROME P450 4F5 (2.46E−062.23429857AF089897Hs. 294030topoisomerase-related function protein 45.01E−062.21437536X91221Hs. 144465ESTs1.55E−052.21446094AK001760Hs. 13801KIAA1685 protein1.54E−072.20444097AW517412Hs. 150757ESTs3.40E−032.20425268AI807883Hs. 180059Homo sapiens cDNA FLJ20653 fis, clone KA3.58E−042.20400751NM_003105*: Homo sapiens sortilin-related4.17E−042.20424145AW802763Hs. 193124pyruvate dehydrogenase kinase, isoenzyme2.84E−062.19430339W28608Hs. 239625integral membrane protein 2B2.63E−062.19419287X91906Hs. 89872chloride channel 5 (nephrolithiasis 2, X1.23E−062.19427374AI150033Hs. 143686ESTs8.34E−032.19427043AA397679ESTs2.93E−042.19400694Target Exon5.84E−072.18421014NM_012227Pseudoautosomal GTP-binding protein-like6.96E−032.17408078N50928Hs. 45203ESTs8.51E−042.17447009AB002340Hs. 16950KIAA0342 gene product8.64E−072.17422239AI878922Hs. 180139SMT3 (suppressor of mif two 3. yeast) ho6.16E−072.16413786AW613780Hs. 13500ESTs6.01E−102.16438307AB011093Hs. 6150hypothetical protein MGC159131.91E−082.16455187AW864050gb: PM2-SN0013-120400-003-c12 SN0013 Homo1.69E−032.15459487AA699665gb: zi78b05.s1 Soares_fetal_liver_spleen7.20E−042.15449935AA004798Hs. 108311ESTs, Weakly similar to T00351 hypotheti9.75E−092.15428695AI355647Hs. 189999purinergic receptor (family A group 5)1.45E−062.15449964AW001741Hs. 24243hypothetical protein FLJ107061.23E−042.14427398AW390020Hs. 20415chromosome 21 open reading frame 113.46E−042.14440548AL117408Hs. 7274DKFZP434P1750 protein3.31E−032.14440464AI917706Hs. 129997ESTs1.49E−052.14422515AW500470Hs. 117950multifunctional polypeptide similar to S1.55E−052.14451190H38361Hs. 26045protein tyrosine phosphatase, receptor t2.99E−052.13422649BE258692Hs. 118910tumor susceptibility gene 1011.82E−062.13435374AI049889ESTs4.37E−042.13423062NM_003655Hs. 5637ESTs8.76E−072.13425164R18189gb: yf98f10.r1 Soares infant brain 1NIB H4.67E−042.12421685AF189723Hs. 106778ATPase, Ca transporting, type 2C, member6.05E−052.12440266AA088809Hs. 19525hypothetical protein FLJ227945.23E−062.12443574U83993Hs. 321709purinergic receptor P2X, ligand-gated io7.69E−052.12447735AA775268Hs. 6127Homo sapiens cDNA: FLJ23020 fis, clone L3.38E−042.11433426H69125Hs. 133525ESTs1.40E−072.11450056BE047394Hs. 8208ESTs, Weakly similar to S71512 hypotheti3.36E−042.11418027AB037807Hs. 83293hypothetical protein1.30E−062.11421650AA781795Hs. 122587ESTs2.45E−072.11453909AW004045Hs. 203365ESTs2.51E−042.11444847AI199345Hs. 153393ESTs1.43E−042.11416448L13210Hs. 79339lectin, galactoside-binding, soluble, 33.05E−112.10449140AW013840Hs. 202092ESTs6.30E−052.10430593AA985190Hs. 246875hypothetical protein FLJ200595.90E−042.10408791AW272251Hs. 254651ESTs1.02E−042.10416435AI431301KIAA0129 gene product4.53E−072.10431637AI879330Hs. 265960hypothetical protein FLJ105639.82E−042.10442547AA306997Hs. 217484ESTs, Weakly similar to ALU1_HUMAN ALU S3.06E−042.10419560AA456130KIAA1255 protein7.10E−052.10441673AI018657ESTs1.80E−042.09452827AI571835Hs. 55468ESTs9.60E−072.09430341NM_006348Hs. 239631golgi transport complex 1 (90 kDa subuni2.32E−042.09442160AI337127Hs. 156325ESTs6.80E−092.09416754H07145Hs. 6799ESTs, Weakly similar to T12483 hypotheti1.55E−052.09446731BE378875Hs. 16059HSPC009 protein1.50E−032.09434128W93170Hs. 284164protein x 00042.58E−062.08426801AA486846Hs. 271795ESTs, Weakly similar to I38022 hypotheti4.92E−052.08412556AW961963gb: EST374036 MAGE resequences, MAGG Homo4.04E−032.08401467NM_022137*: Homo sapiens secreted modular8.05E−032.08416714AF283770Hs. 79630CD79A antigen (immunoglobulin-associated2.38E−032.08441297AW403084Hs. 7766ubiquitin-conjugating enzyme E2E 1 (homo4.09E−052.08449689AF228421Hs. 23889DKFZP564A032 protein1.72E−042.07432360BE045243Hs. 274416Target CAT4.08E−072.07424308AW975531Hs. 154443minichromosome maintenance deficient (S.2.18E−072.07424618L29472Hs. 1802major histocompatibility complex, class3.53E−062.07421261AA600853Hs. 98133ESTs1.01E−032.06430200BE613337Hs. 234896geminin1.10E−112.06423968AF098277Hs. 136529solute carrier family 23 (nucleobase tra1.34E−072.06453313BE005771Hs. 153746hypothetical protein FLJ224903.19E−032.06403789NM_001334*: Homo-sapiens cathepsin O (CTS4.24E−052.06427561AI123333Hs. 134191ESTs1.07E−082.06454877AW836463gb: PM3-LT0032-231299-001-d01 LT0032 Homo6.46E−072.06408716AI567839Hs. 151714Homo sapiens mRNA for KIAA1769 protein,7.10E−072.06438182AW342140Hs. 182545ESTs, Weakly similar to ALU1_HUMAN ALU S3.05E−052.05441993BE395143Hs. 71523ESTs, Weakly similar to S44243 endosomal7.66E−042.05427648AI376722Hs. 180062proteasome (prosome, macropain) subunit,6.20E−102.05414646AA353776Hs. 901CD48 antigen (B-cell membrane protein)4.38E−072.05458079AI796870Hs. 54277DNA segment on chromosome X (unique) 9921.32E−052.05446783AW138343Hs. 141867ESTs3.84E−032.05406117C19001795: gi|10434258|dbj|BAB14191.1|(A3.18E−062.05453255AA278167Hs. 19215Homo sapiens, clone IMAGE: 3605822, mRNA3.20E−042.04446619AU076643Hs. 313secreted phosphoprotein 1 (osteopontin,9.85E−032.04437967BE277414Hs. 5947mel transforming oncogene (derived from1.65E−042.04400137Eos Control1.05E−072.04417787R14948Hs. 23883ESTs9.00E−072.04417600R01279Hs. 16179hypothetical protein FLJ234678.47E−032.04411562AL050201Hs. 70769hypothetical protein DKFZp586E19231.33E−062.04418733AA227714KIAA0129 gene product1.31E−092.03412651AA115333Hs. 107968ESTs6.35E−092.03406420C19000229*: gi|6753826|ref|NP_034311.1|f1.99E−032.03423397NM_001838Hs. 1652chemokine (C-C motif) receptor 74.05E−052.03447002BE242866Hs. 16933HepA-related protein1.96E−062.03409038T97490Hs. 50002small inducible cytokine subfamily A (Cy4.88E−042.03419737H24185Hs. 92918hypothetical protein2.46E−042.03436235AI084982Hs. 120790ESTs4.48E−052.03447043BE410773Hs. 115412hypothetical protein FLJ138813.32E−062.02411987AA375975Hs. 24831ESTs, Moderately similar to ALU8_HUMAN A5.80E−042.02400245Eos Control1.28E−062.02447906AL050062Hs. 19999DKFZP566K023 protein5.25E−052.02451820AW058357Hs. 199248ESTs2.88E−052.02418216AA662240Hs. 283099AF15q14 protein5.20E−102.02408949AF189011Hs. 49163putative ribonuclease III2.94E−052.01423962R73257Hs. 42586KIAA1560 protein2.03E−042.01432053AI024572ESTs8.07E−082.01412754AW160375Hs. 74565amyloid beta (A4) precursor-like protein1.10E−032.01453927AA082465Hs. 125031choline/ethanolaminephosphotransferase6.17E−082.01430556AW967807Hs. 13797ESTs3.75E−042.01451494AI799444Hs. 247095ESTs, Moderately similar to ALU7_HUMAN A9.08E−042.00422546AB007969Hs. 301478KIAA0500 protein1.62E−062.00424755AB033094Hs. 152925KIAA1268 protein5.02E−082.00406782AA430373gb: zw20f11.s1 Soares ovary tumor NbHOT H2.29E−031.99427128AW301984Hs. 49349hypothetical protein FLJ126191.86E−071.99414159AW511414Hs. 257352apolipoprotein L, 65.86E−121.99418348AI537167Hs. 96322hypothetical protein FLJ235606.15E−041.99410369AW975159Hs. 293097ESTs, Weakly similar to A55380 faciogeni5.39E−051.99410315AI638871Hs. 152519Homo sapiens cDNA: FLJ22524 fis, clone H4.48E−071.99407644D16815nuclear receptor subfamily 1, group D, m1.10E−051.98459107AA811881Hs. 28505ubiquitin-conjugating enzyme E2H (homolo1.49E−031.98433150AB035274Hs. 21320postreplication repair protein hRAD18p8.38E−041.98413823AI341417Hs. 29406ESTs9.53E−081.97409518BE384836Hs. 3454KIAA1821 protein2.52E−041.97439225AA192669Hs. 45032ESTs1.00E−061.97430619AF129756Hs. 247452HLA-B associated transcript-51.86E−061.97432606NM_002104Hs. 3066granzyme K (serine protease, granzyme 3;1.05E−061.97441298AW136267Hs. 166629ESTs6.99E−031.96450931N25156Hs. 25648tumor necrosis factor receptor superfami4.52E−081.96457234AW968360Hs. 14355Homo sapiens cDNA FLJ13207 fis, clone NT1.08E−041.96442328AI952430Hs. 150614ESTs, Weakly similar to ALU4_HUMAN ALU S1.07E−041.96414493AL133921Hs. 76272retinoblastoma-binding protein 21.41E−071.96427209H06509Hs. 92423KIAA1566 protein1.67E−061.96416430H60487Hs. 159440bile acid Coenzyme A: amino acid N-acylt1.43E−051.96448692AW013907Hs. 167531methylcrotonoyl-Coenzyme A carboxylase 22.14E−031.95418707U97502Hs. 87497butyrophilin, subfamily 3, member A22.72E−111.95440256U23841Hs. 18851hypothetical protein FLJ108755.24E−061.95436578AI091435Hs. 134859ESTs1.08E−061.94423597AL043117Hs. 129872sperm associated antigen 92.72E−041.94446669AW972832Hs. 29468ESTs1.10E−041.93436061AI248584Hs. 190745Homo sapiens cDNA: FLJ21326 fis, clone C3.75E−031.93408291AB023191Hs. 44131KIAA0974 protein4.99E−051.93432485N90866Hs. 276770CDW52 antigen (CAMPATH-1 antigen)5.39E−071.93420653AI224532Hs. 88550ESTs6.18E−031.93418504BE159718Hs. 85335Homo sapiens mRNA; cDNA DKFZp564D1462 (f1.63E−061.93444398AI146775Hs. 143550ESTs7.61E−031.93408731R85652Homo sapiens mRNA; cDNA DKFZp434F1928 (f3.52E−041.93436395AJ227900gb: Homo sapiens partial mRNA; ID EE2-16B4.64E−081.92429276AF056085Hs. 198612G protein-coupled receptor 518.50E−051.92426476NM_003296Hs. 2042testis specific protein 1 (probe H4-1 p31.20E−031.92454075R43826Hs. 16313Kruppel-like zinc finger protein GLIS27.10E−031.92445245AB032973Hs. 12461LCHN protein2.74E−101.91457665BE551196Hs. 114275ESTs5.71E−031.91418090U57059Hs. 83429tumor necrosis factor (ligand) superfami1.34E−091.91427675AW138190Hs. 180248zinc finger protein 124 (HZF-16)3.00E−061.91435745AW967059Homo sapiens clone 24711 mRNA sequence5.05E−041.91429798AL117578Hs. 222909DKFZP434C128 protein5.79E−091.91424637NM_015057Hs. 151411KIAA0916 protein7.41E−071.91445447H14522ribosomal protein S4, X-linked4.52E−051.91428372AK000684Hs. 183887hypothetical protein FLJ221044.09E−081.90444454BE018316Hs. 11183sorting nexin 21.42E−061.90431122AI267593Hs. 250535Homo sapiens mRNA; cDNA DKFZp434N2412 (f2.54E−041.90436318T77359Hs. 14040Homo sapiens cDNA: FLJ21772 fis, clone C4.82E−041.90446553AB021179Hs. 15299HMBA-inducible6.90E−081.90433401AF039698Hs. 284217serologically defined colon cancer antig6.31E−081.89421677H64092Hs. 38282ESTs2.70E−081.89424194BE245833Hs. 169854gb: TCBAP1E1908 Pedialric pre-B cell acut2.67E−031.89426990AL044315Hs. 173094Homo sapiens mRNA for KIAA1750 protein.2.18E−041.89439810AL109710Hs. 85568EST1.53E−031.89414757U46922Hs. 77252fragile histidine triad gene6.95E−061.89430587AK000341Hs. 246107elongation of very long chain fatty acid1.22E−051.88440527AV657117Hs. 184164ESTs, Moderately similar to S65657 alpha2.16E−061.88414405AI362533KIAA0306 protein1.88E−061.88414171AA360328Hs. 865RAP1 A, member of RAS oncogene family1.72E−041.88448198BE622100Hs. 209406ESTs, Weakly similar to I38600 zinc fing7.63E−071.88433017Y15067Hs. 279914zinc finger protein 2321.66E−061.88449609BE246434Hs. 289026guanine nucleotide binding protein (G pr4.83E−051.88427600AW630918Hs. 179774proteasome (prosome, macropain) activato1.19E−061.88409362AC008044Hs. 54418alkylation repair; alkB homolog6.66E−031.88450379T77813Hs. 268590ESTs4.05E−041.87404426C8000068*: gi|5453579|ref|NP_006120.1| bo1.01E−081.87407949W21874Hs. 247057ESTs, Weakly similar to 2109260A B cell9.97E−061.87446570AV659177Hs. 127160ESTs4.44E−071.87409896AW205479Hs. 279780NY-REN-18 antigen2.36E−081.87419867NM_014246Hs. 252387cadherin, EGF LAG seven-pass G-type rece3.90E−041.87447178AW594641Hs. 192417ESTs5.76E−071.87438475W03856Hs. 13188ESTs, Highly similar to Gene product wit6.54E−091.87443492AI073989Hs. 144913hypothetical protein FLJ235143.68E−041.87400303AA242758Hs. 79136LIV-1 protein, estrogen regulated1.02E−091.87417052NM_000712Hs. 81029biliverdin reductase A1.44E−081.87452406AI002968Hs. 235402ESTs, Weakly similar to T26525 hypotheti5.04E−081.86432857NM_016103Hs. 279582GTP-binding protein Sara4.59E−071.86428933AA743433Hs. 119292ESTs1.97E−041.86429360AK000658Hs. 200332hypothetical protein FLJ206512.52E−061.86422352AA766296Hs. 99200ESTs6.40E−051.86438449AK001333Hs. 6216Homo sapiens hepatocellular carcinoma-as5.96E−041.86421524AA312082Hs. 105445GDNF family receptor alpha 15.48E−081.86419598AW410557Hs. 91471ATPase, Class II, type 9B1.54E−031.86445317AI219856ESTs2.25E−041.86401274Target Exon9.48E−051.86433028AI199144Hs. 283737AD-017 protein2.06E−051.86419439BE252908thyroglobulin2.28E−061.86453037AA045175Hs. 17914ESTs8.76E−071.86432468AW402155Hs. 3003CD3E antigen, epsilon polypeptide (TiT32.04E−031.86450997AW580830Hs. 35254hypothetical protein FLB64218.02E−101.86441787AA813278Hs. 9788hypothetical protein MGC10924 similar to1.19E−061.86450381AW291767Hs. 189829hypothetical protein FLJ127651.37E−031.86410199AW377424Hs. 205126Homo sapiens cDNA: FLJ22667 fis, clone H2.36E−081.86423215C16770gb: C16770 Clontech human aorta polyA mRN8.56E−031.85422085AB018257Hs. 288773zinc finger protein 2941.80E−041.85429358AB037825Hs. 200317KIAA1404 protein1.28E−081.85447631AW140016Hs. 161415ESTs4.33E−061.85453954AW118336Hs. 75251DEAD/H (Asp-Glu-Ala-Asp/His) box binding6.32E−041.85438050BE262816Hs. 6061protein kinase, AMP-activated, beta 1 no6.39E−041.85425939AK001527Hs. 163953hypothetical protein FLJ106652.37E−031.85426911AA812691Hs. 278985ESTs1.44E−041.85426126AL118747Hs. 26691ESTs7.85E−051.85400929ENSP00000252232*: Sterol regulatory eleme1.42E−031.85413048M93221Hs. 75182mannose receptor, C type 16.72E−071.85420613AI873871Hs. 7041ESTs, Weakly similar to A47582 B-cell gr5.30E−091.85409533AW969543Hs. 21291mitogen-activated protein kinase kinase2.39E−041.85430024AI808780Hs. 227730integrin, alpha 65.50E−071.85407110AA018042Hs. 252085Prader-Willi/Angelman syndrome-51.23E−051.85403790NM_001334*: Homo sapiens cathepsin O (CTS1.67E−051.84408214AL120445Hs. 77823hypothetical protein FLJ213439.69E−061.84443285AI301918Hs. 334264ESTs7.83E−041.84445615AW449905Hs. 40919Homo sapiens cDNA FLJ14511 fis. clone NT321E−041.84449720AA311152Hs. 288708hypothetical protein FLJ215624.25E−061.84445806AL137516Hs. 13323hypothetical protein FLJ220591.57E−041.84457400AF032906Hs. 252549cathepsin Z1.05E−071.84424571BE379766polymerase (RNA) II (DNA directed) polyp1.04E−101.84408328R93852Hs. 28411ESTs5.70E−041.84436363AA843926Hs. 124434ESTs6.44E−051.84418850AJ242977Hs. 89278hypothetical protein FLJ111864.88E−091.83422711D60641Homo sapiens mRNA; cDNA DKFZp586l1518 (f3.71E−051.83444889AI917770ESTs6.36E−051.83446506AI123118Hs. 15159chemokine-like factor, alternatively spl3.56E−111.83424437BE244700Hs. 147049cut (Drosophila)-like 1 (CCAAT displacem1.49E−041.83422371NM_001882Hs. 115617corticotropin releasing hormone-binding2.26E−071.83419461AI452601Hs. 288869nuclear receptor subfamily 2, group F, m5.42E−091.83434629AA789081Hs. 4029glioma-amplified sequence-411.80E−051.83425367BE271188Hs. 155975protein tyrosine phosphatase, receptor t1.53E−051.82453275AW247236Hs. 32826CGI-130 protein1.86E−071.82418751BE389014phosphoinositide-3-kinase, regulatory su1.59E−071.82445525BE149866Hs. 14831Homo sapiens, Similar to zinc linger pro5.85E−071.82432107AA779945Hs. 303294ESTs, Weakly similar to ALUB_HUMAN !!!!3.18E−031.82407355AA846203Hs. 193974ESTs, Weakly similar to ALU1_HUMAN ALU S5.23E−041.82422646H87863Hs. 151380ESTs, Weakly similar to T16584 hypotheti1.30E−041.82414485W27026Hs. 182625VAMP (vesicle-associated membrane protei4.19E−031.82421931NM_000814Hs. 1440gamma-aminobutyric acid (GABA) A recepto9.00E−051.82454056AI368836Hs. 24808ESTs, Weakly similar to I38022 hypotheti2.84E−041.82459067AW207623Hs. 262716ESTs, Moderately similar to S65657 alpha1.04E−031.81422530AW972300Hs. 118110bone marrow stromal cell antigen 25.31E−111.81432051AF112461Hs. 272383G protein-coupled receptor 572.98E−031.81405268ENSP00000223174*: KIAA0783 PROTEIN.7.25E−051.81419951AI653415Hs. 195789ESTs3.51E−061.81457259AA459713Hs. 36475KIAA0493 protein1.47E−041.81441683BE564214Hs. 102946ESTs4.30E−071.81421263AB020638Hs. 103000KIAA0831 protein4.10E−081.80431696AA259068Hs. 267819protein phosphatase 1, regulatory (inhib2.00E−031.80437143AW204056Hs. 8917ESTs2.07E−091.80450728AW162923Hs. 25363presenilin 2 (Alzheimer disease 4)5.41E−051.80417312AW888411Hs. 250811leukemia-associated phosphoprotein p18 (3.81E−061.80432647AI807481Hs. 278581fibroblast growth factor receptor 2 (bac8.16E−071.80424232AB015982Hs. 143460protein kinase C, nu1.49E−041.80412715NM_000947Hs. 74519primase, polypeptide 2A (58 kD)8.01E−051.80450260AW090384Hs. 7739hypothetical protein MGC129041.06E−041.80424862AB011472Hs. 153546CDC23 (cell division cycle 23, yeast, ho9.20E−081.80430060NM_002941Hs. 301198roundabout (axon guidance receptor, Dros4.39E−031.80420338AA825595Hs. 88269Homo sapiens, clone MGC: 17339, mRNA, com8.17E−071.80402855NM_001839*: Homo sapiens calponin 3, acid8.44E−041.80430043AI040009Hs. 306327Homo sapiens mRNA; cDNA DKFZp434A012 (fr4.12E−071.79438122AI620270Hs. 129837ESTs, Weakly similar to Z263_HUMAN ZINC1.45E−031.79432460H12912Hs. 274691adenylate kinase 34.12E−101.79445523Z30118Hs. 293788ESTs, Moderately similar to unnamed prot7.17E−051.79406765AA609132Hs. 76662hypothetical protein MGC29939.48E−081.79400517lengsin4.89E−071.79421804AF032105Hs. 108447spinocerebellar ataxia 7 (olivopontocere2.48E−051.79424653AW977534Hs. 151469calcium/calmodulin-dependent serine prot8.73E−041.79418240BE019261Hs. 83869hypothetical protein1.76E−051.79458196AI802408ubiquitin A-52 residue ribosomal protein1.02E−031.79433528AK001605Hs. 3376hypothetical protein FLJ107432.88E−051.79402976Target Exon3.60E−041.78433730AK002135Hs. 3542hypothetical protein FLJ112736.69E−061.78446874AW968304Hs. 56156ESTs1.09E−051.78436856AI469355Hs. 127310ESTs5.43E−091.78459724AI732889Hs. 47341ESTs, Weakly similar to alternatively sp2.77E−031.78433707AI791584Hs. 130741ESTs3.51E−031.78449523NM_000579Hs. 54443chemokine (C-C motif) receptor 53.38E−061.78453250AI346520Hs. 121619chromosome 11 open reading frame 152.30E−081.77430718AI792814Homo sapiens BAC clone RP11-335J18 from8.53E−041.77452065AK000360Hs. 27721Wolf-Hirschhorn syndrome candidate 1-lik8.41E−041.77426899AL043221Hs. 172825KIAA1037 protein9.25E−071.77441791AW372449Hs. 61271hypothetical protein FLJ211591.05E−041.77413029AL119399Hs. 293850ESTs7.99E−051.76453319AI985369Hs. 301134ESTs1.19E−031.76457425AW139202Hs. 301209myeloid/lymphoid or mixed-lineage leukem5.83E−051.76445786AW629819Hs. 144502hypothetical protein FLJ220553.11E−061.76419175AW270037KIAA0779 protein7.55E−081.76428291AA534009Hs. 183487interferon stimulated gene (20 kD)9.79E−061.76408405AK001332Hs. 44672hypothetical protein FLJ104702.98E−111.76426310NM_000909Hs. 169266neuropeptide Y receptor Y11.50E−031.75414812X72755Hs. 77367monokine induced by gamma interferon5.22E−061.75453020AL162039Hs. 31422Homo sapiens mRNA; cDNA DKFZp434M229 (fr2.69E−041.75403743C1002604: gi|8393668|ref|NP_058989.1| kin1.47E−041.75433675AW977653Hs. 75319ribonucleotide reductase M2 polypeptide7.35E−051.75410691AW239226Hs. 65450reticulon 43.22E−061.75421443BE550141Hs. 156148hypothetical protein FLJ132319.38E−051.74414183AW957446Hs. 301711ESTs1.83E−041.74427221L15409Hs. 174007von Hippel-Lindau syndrome3.24E−041.74443589H52931Hs. 165067ESTs3.32E−051.74449480AI741617Hs. 108447spinocerebellar ataxia 7 (olivopontocere1.75E−051.74442272AA988302Hs. 129172ESTs2.85E−031.74429747M87507Hs. 2490caspase 1, apoptosis-related cysteine pr2.73E−071.74414261BE267466Hs. 13561hypothetical protein MGC46929.05E−031.74442138AA445973Hs. 13303Homo sapiens cDNA: FLJ21784 fis, clone H3.64E−051.74412584X54870Hs. 74085DNA segment on chromosome 12 (unique) 241.90E−061.74406825AI982529Hs. 84298CD74 antigen (invariant polypeptide of m9.75E−061.73421893NM_001078Hs. 109225vascular cell adhesion molecule 16.57E−071.73432094AI658580Hs. 61426Homo sapiens mesenchymal stem cell prote7.20E−071.73420344BE463721Hs. 97101putative G protein-coupled receptor9.18E−041.73431740N75450Hs. 183412ESTs, Moderately similar to AF116721 674.00E−041.73419652AL157485Hs. 91973hypothetical protein1.88E−041.73453173AB007902Hs. 32168KIAA0442 protein6.67E−071.72407690R47799Hs. 266957hypothetical protein FLJ142814.68E−081.72426817AL122088Hs172627Homo sapiens mRNA; cDNA DKFZp564C0671 (f4.70E−081.72418945BE246762Hs. 89499arachidonate 5-lipoxygenase2.44E−041.72403828C4000447*: gi|7705570|ref|NP_038851.1| KI1.13E−041.72427920Z11502Hs. 181107annexin A137.84E−041.72421394S49953Hs. 103989DNA-binding transcriptional activator1.79E−031.72447513AW955776Hs. 313500ESTs, Moderately similar to ALU7_HUMAN A3.04E−081.71405689NM_018850*: Homo sapiens ATP-binding cass2.61E−041.71441879AI521936Hs. 107149novel protein similar to archaeal, yeast4.46E−061.71414781D50917Hs. 77293KIAA0127 gene product3.90E−051.71444619BE538082Hs. 8172ESTs, Moderately similar to A46010 X-lin4.33E−041.71451334AI122691Hs. 13268ESTs2.68E−051.71446436BE392690activating transcription factor 54.25E−081.71423332AI091466Hs. 127241sorting nexin 77.16E−081.71431660T30267Hs. 267120hypothetical protein DKFZp434O14271.48E−041.70425274BE281191Hs. 155462minichromosome maintenance deficient (mi4.90E−091.70442961BE614474F-box only protein 224.42E−081.70425995M92432Hs. 1974guanylate cyclase 2D, membrane (retina-s1.35E−031.70429937AL080155Hs. 226372DKFZP434J154 protein1.69E−061.70410660AI061118Hs. 65328Fanconi anemia, complementation group F3.51E−041.70444866BE620779Hs. 12094mitochondrial ribosomal protein L308.52E−051.70416602NM_006159Hs. 79389Protein kinase C-binding protein NELL25.82E−051.70431263AW129203Hs. 322915ESTs2.31E−031.69423201NM_000163Hs. 125180growth hormone receptor1.38E−051.69430844T94960gb: ye38d07.r1 Stratagene lung (937210) H8.59E−051.69403742Target Exon9.17E−061.69433001AF217513Hs. 279905clone HQ0310 PRO0310p11.05E−051.69426214H59846Hs. 321127ESTs, Moderately similar to ALU7_HUMAN A7.93E−031.69430007NM_014892Hs. 227602KIAA1116 protein9.67E−061.69429689R77698Hs. 337778ESTs4.90E−041.69424626AA344308Hs. 128427Homo sapiens BAC clone RP11-335J18 from1.61E−041.69410678BE540516Hs. 293732hypothetical protein MGC31951.88E−051.69439645BE091801Hs. 27167ESTs, Weakly similar to I38022 hypotheti7.02E−091.69431530X61615Hs. 2798leukemia inhibitory factor receptor7.86E−051.69434995AW974995gb: EST387100 MAGE resequences, MAGN Homo2.70E−041.69423420AI571364Hs. 128382Homo sapiens mRNA; cDNA DKFZp761l1224 (f3.52E−051.69453210AL133161Hs. 32360hypothetical protein FLJ108671.57E−051.69446096AI276454gb: ql71a12.x1 Soares_NhHMPu_S1 Homosapi3.79E−041.69433546AI075877Hs. 125461hypothetical protein FLJ115391.21E−031.68435496AW840171Hs. 265398PAR-6 beta6.80E−051.68447211AL161961Hs. 17767KIAA1554 protein1.96E−111.68438277AL022326Hs. 6139synaptogyrin 14.42E−031.68403319fms-related tyrosine kinase 34.52E−051.68436332AL049679Hs. 82302Homo sapiens cDNA FLJ14814 fis, clone NT2.08E−051.68434669AF151534Hs. 92023core histone macroH2A2.23.36E−071.68428123AI702275Hs. 104842hypothetical protein FLJ234076.64E−051.68436957AA902488Hs. 122952ESTs1.38E−051.68421777BE562088Hs. 108196HSPC037 protein6.55E−041.68437708AB033020Hs. 5801KIAA1194 protein8.24E−071.68444821AA053564Hs. 12040STE20-like kinase1.25E−051.68400170Eos Control3.70E−041.68450221AA328102Hs. 24641cytoskeleton associated protein 29.27E−061.68448440AA173467Hs. 62402p21/Cdc42/Rac1-activated kinase 1 (yeast1.29E−061.68424354NM_014314Hs. 145612RNA helicase2.12E−031.68407369AA989060Hs. 193989TAR DNA binding protein4.61E−071.68423054AW449073Hs. 278346CDC2-related protein kinase 76.94E−081.67443542AI927065Hs. 146040ESTs3.92E−051.67452696AI826645Hs. 211534ESTs8.04E−061.67438378AW970529Hs. 86434hypothetical protein FLJ218162.17E−071.67446552AW470827Hs. 156241ESTs2.20E−061.67417707AL035786Hs. 82425actin related protein 2/3 complex, subun1.18E−071.67442993BE018682Hs. 166196ATPase, Class I, type 88, member 12.23E−071.67430048T65054Hs. 73605ESTs3.31E−031.67451050AW937420ESTs5.05E−041.67404602C9001493*: gi|12735190|ref|XP_005622.2| t1.97E−051.66423882BE387203Hs. 134406hypothetical protein FLJ205112.36E−031.66421508NM_004833Hs. 105115absent in melanoma 26.80E−051.66419131AA406293Hs. 109526ESTs8.36E−061.66452207NM_014517Hs. 28423upstream binding protein 1 (LBP-1a)1.14E−061.66445411AL137255Hs. 12646hypothetical protein FLJ226932.80E−081.66403654NM_003071: Homo sapiens SWI/SNF related,1.90E−041.66423450AJ290445Hs. 128759KIAA0524 protein1.00E−031.66430315NM_004293Hs. 239147guanine deaminase2.69E−051.66443547AW271273hypothetical protein FLJ126662.60E−101.66417758U27699Hs. 82535solute carrier family 6 (neurotransmitte8.60E−071.66417689AA828347Hs. 90998KIAA0128 protein; septin 23.65E−091.66449901AI674072gb: wd15h01.x1 Soares_NFL_T_GBC_S1 Homos8.34E−071.66425905AB032959Hs. 318584novel C3HC4 type Zinc finger (ring finge1.11E−031.66407976AI633875Hs. 77823hypothetical protein FLJ213432.07E−051.65416276U41060Hs. 79136LIV-1 protein, estrogen regulated1.29E−051.65418419X55039Hs. 85004centromere protein B (80 kD)1.89E−091.65438384W22358Hs. 109778KIAA1449 protein9.10E−081.65443065H29584Hs. 288198hypothetical protein FLJ139493.07E−061.65438527AI969251Hs. 115325RAB7, member RAS oncogene family-like 12.96E−041.65427507AF240467Hs. 179152toll-like receptor 75.62E−031.65439980AL039706Hs. 19414ESTs, Weakly similar to S25150 gene p277.11E−051.64419493AF001212Hs. 90744proteasome (prosome, macropain) 26S subu1.48E−041.64437325AF142481Hs. 5548f-box and leucine-rich repeat protein 59.02E−081.64435525AI831297Hs. 123310ESTs2.20E−031.64430515AA746503Hs. 283313ESTs6.68E−051.64410165BE560228Hs. 71869apoptosis-associated speck-like protein1.09E−061.64425996W67330hypothetical protein AL1101156.40E−081.64444665BE613126Hs. 47783B aggressive lymphoma gene7.26E−081.64424960BE245380Hs. 1539525′ nucleotidase (CD73)2.14E−041.64449722BE280074Hs. 23960cyclin B12.23E−051.64435427AA682573Hs. 188982ESTs, Weakly similar to organic anion tr4.66E−041.64437186AA338305Hs. 5472hypothetical protein FLJ201731.90E−041.64448797BE614460ribosomal protein L176.90E−061.64446684AI910777Hs. 125087ESTs2.60E−031.63428413AI984187Hs. 245798ESTs4.04E−041.63435787AW162767Hs. 100914hypothetical protein FLJ103523.26E−051.63448377AI494514Hs. 21264ESTs5.24E−041.63451684AF216751Hs. 26813CDA141.14E−031.63402396Target Exon2.00E−041.63441969AI733386ESTs, Weakly similar to ALU1_HUMAN ALU S1.84E−041.63421138AA687420Hs. 190145ESTs1.54E−051.63417353AA375752Hs. 348140Homo sapiens mRNA; cDNA DKFZp586F1822 (f5.38E−041.63410261AF145713Hs. 61490schwannomin-interacting protein 13.36E−041.63458476AA336878Hs. 9842Human DNA sequence from clone RP4-788L204.80E−051.63405372NM_006841: Homo sapiens transporter prote2.82E−041.63452059AI222069Hs. 13015hypothetical protein similar to mouse Dn1.82E−051.63410568AW162948Hs. 64542cleavage and polyadenylation specific fa1.28E−041.63407502U52096gb: Human zinc finger protein (kr-znf1) m2.30E−041.63420560AW207748Hs. 59115ESTs4.40E−051.63412530AA766268Hs. 266273hypothetical protein FLJ133462.49E−061.63448888AW196663Hs. 200242caspase recruitment domain protein 62.43E−051.62428220BE183533Hs. 347128Human DNA sequence from clone 34B21 on c1.64E−071.62450621AW297288Hs. 55918hypothetical protein FLJ113542.40E−061.62419437U61262Hs. 90408neogenin (chicken) homolog 17.24E−051.62403694Target Exon8.29E−061.62441253AI632744Hs. 129501ESTs4.42E−031.62457770BE065030Hs. 124179ESTs7.93E−041.62416647BE297139Hs. 79411replication protein A2 (32 kD)1.54E−061.62410408NM_012260Hs. 632902-hydroxyphytanoyl-CoA lyase3.56E−051.62430248AW958965Hs. 236774high-mobility group (nonhistone chromoso1.57E−091.62447547NM_007229Hs. 18842protein kinase C and casein kinase subst3.40E−061.61431863AA188185Hs. 289043spindlin1.87E−081.61430422AI078115Hs. 54680ESTs1.05E−061.61445657AW612141Hs. 279575Homo sapiens G-protein coupled receptor1.89E−051.61456740AF068302Hs. 125031choline/ethanolaminephosphotransferase2.48E−051.61410382AW664971Hs. 259546ESTs5.40E−051.61421410AI472323Hs. 134353ESTs7.65E−051.61438176AW138970Hs. 144759ESTs7.85E−051.61404584Target Exon3.42E−031.61422423AF283777Hs. 116481CD72 antigen1.72E−031.61441894AA134329Homo sapiens, clone IMAGE: 3685398, mRNA,7.36E−041.61421801AI431597Hs. 284294Breakpoint cluster region protein, uteri2.69E−051.61428379X06026Hs. 2259CD3G antigen, gamma polypeptide (TiT3 co8.68E−051.61451788BE242857Hs. 27021hypothetical protein FLJ111592.35E−061.61444708AW971049Hs. 11774protein (peptidyl-prolyl cis/trans isome9.22E−051.61442358BE567985Hs. 18585ESTs, Moderately similar to ALU4_HUMAN A3.12E−061.60422521AW363324Hs. 126906hypothetical protein FLJ 125981.19E−071.60428475AF172940Hs. 184542CGI-127 protein1.11E−061.60449027AJ271216Hs. 22880dipeptidylpeptidase III7.55E−041.60404240NM_018950: Homo sapiens major histocompat3.66E−091.60414792BE314949Hs. 87128hypothetical protein FLJ233091.12E−081.60416747AW876523Hs. 15929hypothetical protein FLJ129109.45E−061.60418001R80582Hs. 24625ESTs1.62E−031.60433009AA761668gb: nz24c08.s1 NCI_CGAP_GCB1 Homo sapiens6.37E−031.60421016AA504583Hs. 101047transcription factor 3 (E2A immunoglobul9.01E−061.60436256T87113Hs. 193825ESTs1.46E−041.60428418AI368826Hs. 8768ESTs1.04E−061.60451253H48299Hs. 26126claudin 101.22E−031.60425913AA365799SEC22, vesicle trafficking protein (S. c1.11E−061.60418460M26315Hs. 85258CD8 antigen, alpha polypeptide (p32)4.30E−041.60420680AA648758Hs. 187791ESTs2.56E−041.60425691NM_005328Hs. 159226hyaluronan synthase 23.04E−031.60446307T50083Hs. 22247ESTs5.05E−031.60422805AA436989Hs. 121017H2A histone family, member A2.11E−051.60420092AA814043Hs. 88045ESTs2.86E−031.59443959AL120546gb: DKFZp761A069_r1 761 (synonym: hamy2)3.44E−041.59404409C8001172*: gi|10432395|emb|CAC10285.1| (A5.86E−041.59405601Target Exon5.21E−041.59431543AW969619Hs. 259768adenylate cyclase 1 (brain)1.20E−031.59428826AL048842Hs. 194019atlractin3.04E−071.59439498AA908731Hs. 58297CLLL8 protein2.01E−041.59438661AA813539Hs. 123414ESTs, Weakly similar to I37570 zinc fing7.79E−061.59447105AW377610Hs. 11123DKFZP564G092 protein2.19E−051.59412983AI478828Hs. 16570ESTs, Weakly similar to I38022 hypotheti6.13E−051.59440764AA905406Hs. 9905ESTs, Weakly similar to unnamed protein1.78E−031.59452806AW014549Hs. 58373ESTs4.21E−041.59404919ENSP00000237577*: Polycystin 2 (Autosomal5.59E−031.59424737BE301883Hs. 152707glioblastoma amplified sequence7.59E−051.59435205X54136Hs. 181125immunoglobulin lambda locus5.77E−031.59403738C4000675*: gi|3426332|gb|AAC32272.1| (AF04.04E−091.59408705AA312135Hs. 46967HSPCO34 protein7.26E−091.59431377AW178807Hs. 246182ESTs2.46E−031.58433359H70007gb: yr89e07.r1 Soares fetal liver spleen2.39E−031.58447809AW207605Hs. 164230ESTs, Highly similar to JC7266 3′,5′-cyc3.29E−081.58415938BE383507Hs. 78921A kinase (PRKA) anchor protein 11.35E−061.58434375BE277910Hs. 38333′-phosphoadenosine 5′-phosphosulfate sy7.89E−081.58408412AW193033Hs. 124436ESTs9.63E−041.58419672AA465113Hs. 23853ESTs, Weakly similar to A34615 profilagg4.60E−041.58435931AI077464RNA binding motif protein 91.37E−041.58432645014041Hs. 347340H-2K binding factor-23.91E−031.58412886AF041163Hs. 74647Human T-cell receptor active alpha-chain3.77E−061.58424696BE439547Hs. 151903GrpE-like protein cochaperone2.03E−041.57446725AL050173Hs. 16007chromosome 21 open reading frame 251.32E−051.57439788N71241Hs. 119275ESTs1.99E−031.57431736AI912234Hs. 3297ribosomal protein S27a2.14E−051.57449368AW009668Hs. 232284ESTs1.48E−031.57452866R26969Hs. 268016Homo sapiens cDNA: FLJ21243 fis, clone C4.10E−051.57429586T73510Hs. 209153angiopoietin-like 34.09E−071.57453887BE564037Hs. 36237hypothetical protein4.59E−061.57428759AC007059Hs. 193065hypothetical protein DKFZp547M136 simila8.66E−061.57401847C17000828: gi|1666071|emb|CAA69174.1| (Y06.56E−051.57434747M837085ESTs4.24E−031.57449601AA461509Hs. 293565ESTs, Weakly similar to putative p150 [H4.36E−051.57457758AI475671Hs. 88607ESTs, Highly similar to F-box protein FB3.83E−041.57447574AF162666Hs. 18895tousled-Iike kinase 17.59E−071.57401928Target Exon2.68E−031.57406274Target Exon6.32E−051.56449291BE176893Hs. 23440KIAA1105 protein1.17E−061.56429280AI445960Hs. 3685hypothetical protein FLJ202095.66E−091.56419946AI298508Hs. 18963ESTs1.24E−041.56439008AF075072Hs. 167535ESTs, Weakly similar to ALU1_HUMAN ALU S3.38E−031.56444756AA278501Hs. 200332hypothetical protein FLJ206515.36E−031.56425409H18021Hs. 25005hypothetical protein MGC33291.55E−031.56453387AI990741Hs. 252809ESTs5.19E−041.56438156Z20244Hs. 192906ESTs3.43E−051.56401558ENSP00000220478*: SECRETOGRANIN III.1.17E−041.56420807M280627Hs. 57846ESTs6.07E−041.56434942M021562Hs. 347950Homo sapiens. Similar to nuclear localiz3.13E−061.55444479AA194980Hs. 30818Homo sapiens cDNA FLJ13681 fis. clone PL2.39E−031.55444078BE246919Hs. 10290U5 snRNP-specific 40 KDa protein (hPrp8-6.70E−041.55421612AF161254Hs. 1061968D6 antigen7.97E−101.55432740AF061034Hs. 278898tumor necrosis factor alpha-inducible ce1.66E−071.55456563AA989220Hs. 766ESTs1.09E−041.55420573AA278407Hs. 88528ESTs4.79E−031.55437998U92025Hs. 200680ESTs, Moderately similar to KIAA0573 pro3.78E−031.55423570AW838306Hs. 129819hypothetical protein FLJ111602.25E−051.55425356BE244879Hs. 155939inositol polyphosphate-5-phosphatase, 146.94E−041.55443661AA336609Hs. 10862Homo sapiens cDNA: FLJ23313 fis, clone H1.04E−041.55433878AA613245Hs. 259181ESTs4.25E−041.55449337AW772245Hs. 223978ESTs2.97E−051.55434608AA805443Hs. 179909hypothetical protein FLJ229953.60E−041.55418310AA814100Hs. 86693ESTs9.87E−041.54436388AI806172Hs. 166486Homo sapiens cDNA FLJ11432 fis, clone HE4.35E−061.54417848AA206581Hs. 116586ESTs, Weakly similar to JC5314 CDC28/cdc1.02E−051.54435438H84421Hs. 4890ubiquitin-conjugating enzyme E2E 3 (homo2.83E−041.54427790NM_002887Hs. 180832hypothetical protein MGC86412.02E−051.54442968AK000606Hs. 8868golgi SNAP receptor complex member 13.73E−091.54416727W05023gb: za45a11.ri Soares fetal liver spleen4.98E−031.54440201AL359588Hs. 7041hypothetical protein DKFZp762B2264.87E−041.54415670AA166633Hs. 117183gb: zq39b01.r1 Stratagene hNT neuron (9374.54E−041.54408380AF123050Hs. 44532diubiquitin3.89E−091.54403746ENSP00000226812*: KIAA1494 protein (Fragm9.67E−041.53420172AA601122Hs. 95655secreted and transmembrane 15.53E−031.53415200AL040328Hs. 78202SWI/SNF related, matrix associated, acti6.23E−081.53441488AW450935Hs. 7862hypothetical protein FLJ203127.06E−071.53413859AW992356Hs. 8364Homo sapiens pyruvate dehydrogenase kina1.25E−041.53425601AW629485Hs. 140720GSK-3 binding protein FRAT21.63E−061.53439704AW020018Hs. 293267ESTs2.65E−051.53409344R47279Hs. 285673hypothetical protein FLJ209502.38E−061.53424602AK002055Hs. 151046hypothetical protein FLJ111931.23E−041.53429556AW139399Hs. 98988ESTs2.67E−031.53446756AW028485Hs. 26136hypothetical protein MGC141565.35E−071.53418827BE327311Hs. 47166HT0211.00E−051.53438204AI589645Hs. 128690ESTs2.96E−041.53417377NM_016603Hs. 82035potential nuclear protein C5ORF5; GAP-li3.15E−081.52422536AA311915Hs. 187726gb: EST182621 Jurkat T-cells VI Homo sapi6.56E−051.52431945AW000827Hs. 11962apoptosis regulator BCL-G3.53E−031.52421025AW958975Hs. 29397Homo sapiens cDNA FLJ13226 fis. clone OV7.11E−061.52444652BE513613Hs. 11538actin related protein 2/3 complex, subun7.17E−031.52458345AI864078Hs. 144076ESTs3.45E−041.52425692D90041Hs. 155956N-acetyltransferase 1 (arylamine N-acety2.04E−061.52400120Eos Control8.78E−041.52440591AA431599Hs. 132799hypothetical protein FLJ234517.90E−051.52412826BE001722Hs. 14877ESTs, Weakly similar to (defline not ava1.45E−031.52408683R58665Hs. 46847TRAF and TNF receptor-associated protein2.29E−091.52424852AI222779Hs. 144848ESTs9.90E−031.52423694NM_003747Hs. 131814tankyrase, TRF1-interacting ankyrin-rela2.70E−081.52432134AI816782Hs. 122583hypothetical protein FLJ219347.31E−061.52447131NM_004585Hs. 17466retinoic acid receptor responder (tazaro3.80E−061.52427212AW293849Hs. 58279ESTs, Weakly similar to ALU7_HUMAN ALU S4.87E−061.52423524AF055989Hs. 129738potassium voltage gated channel, Shaw-re4.04E−041.52457933AA759062Hs. 121434ESTs1.63E−031.52425769U72513Hs. 159486Human RPL13-2 pseudogene mRNA, complete3.40E−061.51431262NM_006672Hs. 251395solute carrier family 22 (organic anion6.08E−051.51457764AW028284Hs. 4815nudix (nucleoside diphosphate linked moi3.11E−041.51438712AW978161Hs. 2685555′-3′ exoribonuclease 21.00E−031.51420514N32301Hs. 102496ESTs6.01E−041.51410972AW812259gb: RC0-ST0174-191099-031-b05 ST0174 Homo2.97E−031.51446493AK001389Hs. 15144hypothetical protein DKFZp564O0432.66E−061.51415000AW025529Hs. 239812Homo sapiens serologically defined breas8.80E−081.51427647W19744Hs. 180059Homo sapiens cDNA FLJ20653 fis, clone KA7.28E−061.50409022BE222648Hs. 241432ESTs, Highly similar to C380A1.1b [H. sap3.80E−061.50441980AK001441Hs. 8055hypothetical protein FLJ105791.53E−031.50445424AB028945Hs. 12696cortactin SH3 domain-binding protein9.78E−071.50414948C15240Hs. 182155ESTs2.68E−061.50442878AI868648Hs. 22315ESTs7.00E−051.50438021AV653790WW domain-containing protein 11.28E−061.50426723AW003069Hs. 183860ESTs7.02E−061.50420847AI356920Hs. 23510ESTs2.14E−031.50406972M32053gb: Human H19 RNA gene, complete cds.6.00E−031.50445309AL157474Hs. 12504likely ortholog of mouse Arkadia3.14E−051.50421712AK000140Hs. 107139hypothetical protein9.42E−091.50414091T83742Hs. 334616gb: yd67g02.s1 Soares fetal liver spleen2.35E−051.50402945Target Exon1.02E−031.50400487ENSP00000238977*: lnterferon-induced prot1.77E−041.50438308AI343469Hs. 127685KIAA1627 protein7.96E−061.50411227AW833258gb: RC2-TT0007-131099-011-b10_1 TT0007 Ho7.01E−041.50451452BE560065Hs. 26433dolichyl-phosphate(UDP-N-acetylglucosam1.34E−041.49451806NM_003729Hs. 27076RNA 3′-terminal phosphate cyclase1.25E−041.49424924AL039103Hs. 153834pumilio (Drosophila) homolog 13.26E−061.49452136AU076713Hs. 479RAB5C, member RAS oncogene family4.25E−031.49439375AA689526Hs. 344249steroid dehydrogenase homolog3.64E−061.49410177NM_015425Hs. 59475DKFZP586M0122 protein1.00E−031.49407813AL120247Hs. 40109KIAA0872 protein1.86E−051.49420505AW967984Hs. 122552G-2 and S-phase expressed 14.16E−031.49456373BE247706Hs. 89751membranE−spanning 4-domains, subfamily A4.10E−031.49412853M34175Hs. 74626adaptor-related protein complex 2, beta2.89E−041.49434369AI650363Hs. 116462ESTs1.34E−031.49442751AI358404gb: qw20f03.x1 NCI_CGAP_Ut3 Homo sapiens2.61E−051.49442432BE093589Hs. 38178hypothetical protein FLJ234683.18E−061.49408784AW971350Hs. 63386ESTs9.38E−051.49449629AA031547Hs. 298442adaptor-related protein complex 3, mu 14.62E−051.49419110AA234171Hs. 187626ESTs2.44E−041.49457238U07358Hs. 211601mitogen-activated protein kinase kinase2.21E−031.49408483AA464836Hs. 291079ESTs, Weakly similar to T27173 hypotheti5.75E−071.49456633AW139036Hs. 10895740S ribosomal protein S27 isoform6.06E−041.48450746D82673Hs. 278589general transcription factor II, i1.58E−091.48438637BE500941Hs. 126730ESTs, Weakly similar to KIAA1214 protein1.08E−031.48444775AI040384Hs. 19102ESTs, Weakly similar to organic anion tr1.50E−071.48426335AI054347Hs. 2017ribosomal protein L386.98E−031.48450253AL133047Hs. 24715Homo sapiens mRNA; cDNA DKFZp434D0215 (f4.78E−051.48434466AB037829Hs. 3862regulator of nonsense transcripts 2; DKF2.91E−061.48446164AW273539hypothetical protein FLJ235773.00E−031.48458533AA314487Hs. 11123DKFZP564G092 protein7.99E−051.48450377AB033091KIAA1265 protein7.22E−051.48411798AW864049Hs. 133505gb: PM2-SN0013-120400-003-c06 SN0013 Homo1.10E−031.48419715AF070523Hs. 92384vitamin A responsive; cytoskeleton relat4.88E−071.48422611AA158177Hs. 118722fucosyltransferase 8 (alpha (1, 6) fucosy1.93E−061.48453186AK001708Hs. 32271hypothetical protein FLJ108463.21E−041.48403330Target Exon4.62E−051.47447095AI361424Hs. 265174ESTs1.74E−031.47445175AV652851Hs. 20255ESTs3.04E−051.47406868AA505445Hs. 300697immunoglobulin heavy constant gamma 3 (G1.24E−041.47424683N87519Hs. 27196ESTs1.58E−051.47453394AW960474Hs. 40289ESTs5.61E−061.47416744AL135579Hs. 79709phosphotidylinositol transfer protein3.24E−071.47416206AW206248Hs. 111092hypothetical protein FLJ223321.53E−091.47400975Target Exon1.06E−031.47452068W76412Hs. 57877ESTs1.45E−041.47444985AI677737Hs. 28329hypothetical protein FLJ140053.04E−051.47430945U80669Hs. 55999NK homeobox (Drosophila), family 3. A1.72E−051.47424180AB032987Hs. 320861KIAA1161 protein1.08E−041.47446189H85224Hs. 214013ESTs4.67E−051.47433991AA912749ESTs7.45E−031.47412972AA771898Hs. 33412ESTs2.53E−031.47433418AA587831Hs. 87134ESTs2.47E−031.47429520AA160142Hs. 205058hypothetical protein FLJ200752.48E−031.46452852AK001972Hs. 30822hypothetical protein FLJ111101.77E−081.46419083AI479560Hs. 98613Homo sapiens cDNA FLJ12292 fis. clone MA5.14E−061.46422643D42045Hs. 1560DNA-crosslink repair gene SNM12.05E−041.46421965AA301100Hs. 346482gb: EST14128 Testis tumor Homo sapiens cD1.07E−061.46448277BE622827Hs. 99486hypothetical protein FLJ130441.67E−071.46423979AF229181Hs. 136644CS box-containing WD protein1.77E−031.46459169AI905517gb: RC-BT091-210199-105 BT091 Homo sapien1.19E−031.46442220AL037800Hs. 8148selenoprotein T1.41E−051.46407807AL031427Hs. 40094Human DNA sequence from clone 167A19 on5.25E−041.46426642AW068223Hs. 171581ubiquitin C-terminal hydrolase UCH374.71E−061.46442348BE315496Hs. 8258DKFZP434D1335 protein1.18E−031.46443487AI073491Hs. 269887ESTs, Highly similar to KPBB_HUMAN PHOSP1.03E−031.46419586AI088485Hs. 144759ESTs, Weakly similar to I38022 hypotheti6.52E−081.46433514AW183734Hs. 189782hypothetical protein FLJ107477.13E−041.46417321N68722Hs. 191368ESTs6.13E−041.46408521AA055264Hs. 260848ESTs, Weakly similar to S23650 retroviru7.91E−071.45438510AL080220Hs. 6285DKFZP586P0123 protein1.59E−051.45441458AW815108gb: QV4-ST0212-091199-023-h01 ST0212 Homo4.05E−041.45420568F09247Hs. 247735protocadherin alpha 101.65E−051.45431186NM_012249Hs. 250697ras-like protein4.34E−071.45451987AA815092Hs. 77554Homo sapiens cDNA FLJ14967 fis, clone TH6.89E−041.45419998AA252691Hs. 346200gb: zs26d09.r1 NCI_CGAP_GCB1 Homo sapiens2.32E−031.45421272AA704157ESTs2.59E−041.45400200NM_002788*: Homo sapiens proteasome (pros7.15E−051.45400440X83957Hs. 83870nebulin3.35E−031.45444654AV650572Hs. 23440KIAA1105 protein6.77E−061.45446793AW590131Hs. 156468ESTs5.34E−031.45445919T53519Hs. 334692hypothetical protein MGC141415.08E−031.45433422AW976627Hs. 284294Breakpoint cluster region protein, uteri2.98E−071.45421721AB037799Hs. 107279KIAA1378 protein4.59E−031.45444913AI362726Hs. 193656Homo sapiens mRNA for KIAA1658 protein,1.15E−061.45421957AW068637Hs. 109857hypothetical protein DKFZp434H08208.29E−031.45412935BE267045Hs. 75064tubulin-specific chaperone c4.27E−081.44413884AI668892Hs. 239758hypothetical protein FLJ12389 similar to1.04E−041.44417961Z44190Hs. 83023peroxisomal biogenesis factor 11B1.35E−071.44442619AA447492Hs. 20183ESTs, Weakly similar to AF164793 1 prote3.67E−061.44439894AA853077Hs. 300697immunoglobulin heavy constant gamma 3 (G7.44E−031.44422241Y00062Hs. 170121protein tyrosine phosphatase, receptor t1.57E−081.44407687AK002011Hs. 37558hypothetical protein FLJ111498.19E−041.44427929BE613835Hs. 181159Homo sapiens mRNA; cDNA DKFZp434F0217 (f2.28E−051.44410054AL120050Hs. 58220Homo sapiens cDNA: FLJ23005 fis, clone L1.21E−031.44443639BE269042Hs. 9661proteasome (prosome, macropain) subunit,4.08E−071.44449437AI702038Hs. 100057Homo sapiens cDNA: FLJ22902 fis, clone K2.51E−051.44406918M88357gb: Homo sapiens DNA-binding protein (ZNF6.10E−031.44424286AA338285Hs. 90744proteasome (prosome, macropain) 26S subu2.50E−071.44425261BE385099hypothetical protein MGC30171.12E−041.44452822X85689Hs. 288617hypothetical protein FLJ226216.51E−041.44425289AW139342Hs. 155530interferon, gamma-inducible protein 168.16E−061.44428894AA437066Hs. 271736ESTs2.54E−031.44418533NM_004533Hs. 85937myosin-binding protein C, fast-type8.68E−031.43411030BE387193Hs. 678967-60 protein8.65E−061.43435882AW194987ESTs2.85E−041.43444773BE156256Hs. 11923hypothetical protein6.80E−031.43435522N64214Hs. 9774synovial sarcoma translocation gene on c2.42E−071.43400552Target Exon2.09E−041.43449103T24968Hs. 23038HSPC071 protein6.24E−061.43411492T46848Hs. 70337immunoglobulin superfamily, member 42.14E−061.43450456AA600192ESTs, Weakly similar to ALUB_HUMAN !!!!6.66E−061.43440515AJ131245Hs. 7239SEC24 (S. cerevisiae) related gene famil3.40E−031.43434924AA443164Hs. 23259hypothetical protein FLJ134337.81E−071.43439981AI348408Hs. 124675ESTs, Weakly similar to T14742 hypotheti3.16E−071.43452268NM_003512HS. 28777H2A histone family, member L6.16E−091.43408358D20044Hs. 12929hypothetical protein FLJ207212.62E−041.42446755AW451473Hs. 16134serine/threonine kinase 101.34E−031.42435772AA700019Hs. 132992ATP-binding cassette, sub-family G (WHIT1.62E−051.42457250AA811987Hs. 125779ESTs5.09E−031.42415192D17793Hs. 78183aldo-keto reductase family 1, member C31.35E−051.42418506AA084248Hs. 85339G protein-coupled receptor 391.28E−031.42407972AA827639Hs. 18587KIAA1588 protein8.57E−031.42452718AI762301Hs. 44017sirtuin (silent mating type information1.90E−041.42443325BE398006Hs. 90462Homo sapiens, clone IMAGE: 4132043, mRNA,3.44E−031.42422040AA172106Hs. 110950Rag C protein9.07E−051.42442296NM_007275Hs. 8186lung cancer candidate1.13E−051.42418475AI858732Hs. 30443sentrin/SUMO-specific protease1.94E−041.42403147Target Exon4.29E−031.42452647N29495Hs. 96870staufen (Drosophila, RNA-binding protein4.56E−031.42415049N67334Hs. 50158ESTs1.54E−031.41406605Target Exon9.18E−051.41434152AI792665Hs. 291190ESTs1.11E−031.41433307AI393009Hs. 153385hypothetical protein MGC55096.73E−041.41414245BE148072Hs. 75850WAS protein family, member 11.25E−031.41419407AW410377Hs. 41502hypothetical protein FLJ212762.41E−071.41414548AW937036Hs. 183506hypothetical protein FLJ142135.51E−041.41421958AA357185Hs. 109918ras homolog gene family, member H3.31E−041.41450122BE313765ESTs, Weakly similar to I38022 hypotheti6.86E−061.41445308AW975748Hs. 5724sclerostin5.31E−051.41434045AI065133Hs. 152316hypothetical protein PRO09711.76E−041.41423262NM_005479Hs. 126057frequently rearranged in advanced T-cell1.49E−071.41451413AA448974Hs. 26367PC3-96 protein1.90E−061.41434978AA321238Hs. 4310eukaryotic translation initiation factor2.64E−031.41417100AI828908Hs. 4552ubiquilin 21.80E−041.41445692AI248322Hs. 182099ESTs2.29E−051.41436486AA742221Hs. 120633ESTs3.93E−031.41441976AA428403Hs. 106131ESTs1.08E−051.41445530BE294791hypothetical protein FLJ126663.72E−041.41402907NM_024777*: Homo sapiens hypothetical pro9.75E−031.41419165AW860767Hs. 118879ESTs1.90E−031.41406815AA833930tRNA isopentenylpyrophosphate transferas1.03E−031.41421726AK001237Hs. 319088hypothetical protein FLJ103751.04E−071.41437392AL359943Hs. 132272Homo sapiens mRNA; cDNA DKFZp762D186 (fr3.68E−031.41439128AI949371Hs. 13854ESTs9.06E−061.41457393AW970603gb: EST382684 MAGE resequences, MAGK Homo7.71E−031.40449975BE546004Hs. 22350hypothetical protein LOC567578.49E−041.40451436W86497KIAA0729 protein9.49E−051.40429490AI971131Hs23889ESTs, Weakly similar to ALU7_HUMAN ALU S2.97E−061.40454117BE410100Hs. 40368adaptor-related protein complex 1, sigma5.93E−041.40401431Target Exon1.27E−031.40442445AA082665Hs. 209561KIAA1715 protein1.22E−041.40410297AA148710lumican3.82E−081.40444960AI611317Hs. 341531ESTs6.84E−071.40418835AL023694Hs. 88977hypothetical protein dJ511E16.21.04E−051.40446178AI278844Hs. 149450ESTs2.18E−041.40430299W28673Hs. 106747serine carboxypeptidase 1 precursor prot8.74E−051.40420790L04791Hs. 99924excision repair cross-complementing rode5.78E−031.40427701AA411101Hs. 243886nuclear autoantigenic sperm protein (his3.52E−041.40433225AW816515Hs. 173540ATPase, Class V, type 10D9.45E−051.40444670H58373Hs. 332938hypothetical protein MGC53701.04E−051.40435099AC004770Hs. 4756flap structure-specific endonuclease 11.89E−031.40446291BE397753Hs. 14623interferon, gamma-inducible protein 301.32E−031.40417628T84214gb: yd32f10.r1 Soares fetal liver spleen2.53E−051.40428820AA436187Hs. 172631integrin, alpha M (complement component2.63E−061.39438356AA805530Hs. 48527ESTs7.22E−031.39422310AA316622Hs. 98370cytochrome P450, subfamily IIS, polypept2.06E−051.39441149AI569766Hs. 13205ESTs2.12E−031.39443490AB018313Hs. 9452KIAA0770 protein1.66E−071.39425272AA354138Hs. 47209ESTs, Weakly similar to C35826 hypotheti3.57E−031.39443037AW500305Hs. 8906syntaxin 71.61E−051.39409330AK001231Hs. 53940hypothetical protein FLJ103699.63E−041.39408822AW500715Hs. 57079Homo sapiens cDNA FLJ13267 fis, clone OV2.44E−061.39426809BE313114Hs. 29706ESTs2.91E−051.39416197AA176253Hs. 110309major histocompatibility complex, class2.96E−071.39410334AW979261Hs. 291993ESTs5.81E−051.39422645L40027Hs. 118890glycogen synthase kinase 3 alpha3.13E−051.39414931AK000342Hs. 77646Homo sapiens mRNA; cDNA DKFZp761M0223 (f2.07E−041.39434809AW974687gb: EST386776 MAGE resequences, MAGM Homo6.88E−031.39421315D78791Hs. 103419fasciculation and elongation protein zet4.60E−071.39420985X94703RAB28, member RAS oncogene family8.20E−051.39422653AI092590Hs. 118962far upstream element (FUSE) binding prot1.20E−031.39401047Target Exon5.92E−031.39408417AI124541Hs. 44720hypothetical protein P1 p373c63.93E−041.39415130W85893Hs. 249867ESTs1.44E−051.39447511BE274845Hs. 17110Homo sapiens mRNA; cDNA DKFZp434C2016 (f9.71E−031.39421970AF227156Hs. 110103RNA polymerase l transcription factor RR9.45E−041.38414733BE514535Hs. 77171minichromosome maintenance deficient (S.8.98E−061.38451107AA235108Hs. 17639Homo sapiens ubiquitin protein ligase (U1.06E−041.38428104AA421350ESTs1.62E−041.38435124AA725362Hs. 120456ESTs2.46E−041.38423558AW865643Hs. 275865ribosomal protein S187.10E−051.38430933AW863635gb: MR3-SN0010-270300-103-h02 SN0010 Homo1.88E−031.38419511AA429750Hs. 75113general transcription factor IIIA3.02E−051.38423787AJ295745Hs. 236204nuclear pore complex protein2.58E−041.38438441AW664960Hs. 205319ESTs5.62E−051.38457186AW371847Hs. 313499ESTs2.77E−041.38444388AB033058Hs. 11101KIAA1232 protein2.86E−031.38419135R61448Hs. 106728ESTs, Weakly similar to KIAA1353 protein1.43E−081.38417386AL037228Hs. 82043D123 gene product7.23E−041.38444363AI142827Hs. 143656ESTs8.10E−051.38447829AI433029Hs. 164104ESTs7.35E−031.38434848BE256304Hs. 32148AD-015 protein1.74E−031.38443186AI885827Hs. 7149ESTs, Weakly similar to T13963 formin re1.89E−031.38436563AJ239450Hs. 157874ESTs1.04E−041.38414176BE140638Hs. 75794EDG-2 (endothelial differentiation, lys6.98E−031.38413771AA810047Hs. 4112acetyl-Coenzyme A acetyltransferase 2 (a3.74E−041.38430027AB023197Hs. 227743KIAA0980 protein3.32E−091.38432403AA550815Hs. 124840ESTs1.03E−051.37454038X06374Hs. 37040platelet-derived growth factor alpha pol2.84E−031.37409593AB032985Hs. 55069neurexophilin 37.75E−041.37408124U89337Hs. 42853cAMP responsive element binding protein-4.40E−071.37457062AA404520Hs. 125845ribulose-5-phosphate-3-epimerase8.18E−041.37434894AW977850Hs. 23856hypothetical protein MGC52974.62E−031.37456619AV647917Hs. 107153inhibitor of growth family, member 1-lik1.49E−081.37447811C15005Hs. 17121ESTs, Moderately similar to GRPM MOUSE G2.97E−041.37421662NM_014141Hs. 106552cell recognition molecule Caspr21.32E−031.37411678AI907114Hs. 71465squalene epoxidase7.96E−041.37411352NM_002890Hs. 758RAS p21 protein activator (GTPase activa2.60E−051.37420962NM_005904Hs. 100602MAD (mothers against decapentaplegic, Dr2.22E−071.37408388AF091086Hs. 44563hypothetical protein1.02E−041.37438517AI439688Hs. 6289hypothetical protein FLJ208864.50E−051.37404813Target Exon1.79E−031.37448361H82028Hs. 238707hypothetical protein FLJ224571.29E−041.37441077AI241273Hs. 15312ESTs5.25E−081.36459190AW410601Hs. 30026HSPC182 protein2.26E−041.36421297AB037360KIAA1255 protein1.33E−071.36417929R27219Hs. 74647Human T-cell receptor active alpha-chain9.13E−051.36421983AI252640Hs. 110364peptidylprolyl isomerase C (cyclophilin4.89E−061.36444842AF084479Hs. 194688bromodomain adjacent to zinc finger doma1.24E−051.36423485AB037809Hs. 129268KIAA1388 protein2.34E−031.36446110AI305223Hs. 148056ESTs3.07E−041.36435635AF220050Hs. 181385uncharacterized hematopoietic stem/proge1.29E−041.36408360AI806090Hs. 44344hypothetical protein FLJ205341.33E−081.36412622AW664708Hs. 171959ESTs9.40E−031.36414718H95348Hs. 107987ESTs1.35E−031.36444886AW340504Hs. 148557ESTs1.75E−031.36449188AW072939Hs. 347187myotubularin related protein 16.45E−071.36410804U64820Hs. 66521Machado-Joseph disease (spinocerebellar2.44E−041.36400296AA305627Hs. 139336ATP-binding cassette, sub-family C (CFTR3.61E−031.36427080AW068287Hs. 301175ras-related C3 botulinum toxin substrate6.15E−051.36452934AA581322Hs. 4213hypothetical protein MGC162074.31E−051.36409353NM_006858Hs. 54411putative T1/ST2 receptor binding protein7.85E−051.36410426AA085039Hs. 285013putative human HLA class II associated p8.45E−031.36421944AA344367Hs. 109760Target CAT5.43E−051.36412288NM_003005Hs. 73800selectin P (granule membrane protein 1409.21E−031.35445165AV652831Hs. 234058gb: AV652831 GLC Homo sapiens cDNA clone2.67E−061.35432372AI659280Hs. 155004ESTs3.61E−051.35421887AW161450Hs. 109201CGI-86 protein9.93E−061.35418962AA714835Hs. 271863ESTs1.92E−071.35407885AA373889Hs. 41007mitochondrial ribosomal protein L224.57E−071.35443835AF016371Hs. 9880peptidyl prolyl isomerase H (cyclophilin1.23E−061.35456113H71616Hs. 135233ESTs2.62E−031.35423878AI907090Hs. 52891hypothetical protein PRO18534.29E−051.35434509AA193565Hs. 79276Homo sapiens clone IMAGE: 121558 mRNA seq2.52E−031.35413129AF292100Hs. 104613RP42 homolog7.65E−061.35419985H66373Hs. 5856ESTs, Highly similar to bA393J16.3 [H. sa8.31E−041.35432623AA557351Hs. 152448ESTs, Moderately similar to S14147 multi7.55E−041.35421489AI922821Hs. 32433ESTs2.40E−031.35424539L02911Hs. 150402Activin A receptor, type I (ACVR1) (ALK5.27E−051.35410256AB037732Hs. 61441KIAA1311 protein1.95E−051.35410365AI287518Homo sapiens mRNA; cDNA DKFZp586D0923 (f1.10E−031.35458439AV647220Hs. 106576alanine-glyoxylate aminotransferase 2-li1.43E−051.35406137NM_000179*: Homo sapiens mutS (E. coli) h1.43E−031.35428466AF151063Hs. 184456hypothetical protein1.07E−041.35432358AI093491Hs. 274413hypothetical protein FLJ112185.55E−041.35416676AW392022Hs. 79507KIAA0582 protein2.42E−031.35447139AL134744Hs. 10852ESTs4.56E−081.35436137AI056769Hs. 133512ESTs9.06E−051.35438459T49300Hs. 35304Homo sapiens cDNA FLJ13655 fis, clone PL3.65E−051.35424649BE242035Hs. 151461embryonic ectoderm development9.97E−071.35413806L12535Hs. 75551Ras suppressor protein 13.39E−051.35424972BE247567Hs. 154045KIAA0082 protein8.45E−071.35447387AI268331Hs. 102237tubby super-family protein1.42E−071.34413858NM_001610Hs. 75589acid phosphatase 2, lysosomal1.36E−031.34427399NM_014883Hs. 177664KIAA0914 gene product2.29E−061.34455631BE063031gb: MR0-BT0265-231199-002-e09 BT0265 Homo3.66E−031.34409542AA503020Hs. 36563hypothetical protein FLJ224186.76E−031.34429598AA811257Hs. 269710ESTs8.67E−051.34421166AA305407Hs. 102308potassium inwardly-rectifying channel, s4.96E−071.34432523AA551756ESTs7.86E−061.34445652AL117473Hs. 13036DKFZP727A071 protein2.35E−051.34433923AI823453Hs. 146625ESTs2.49E−051.34420843H96982Hs. 42321ESTs1.00E−031.34440328AW392243endogenous retroviral protease5.80E−041.34442406NM_014846Hs. 8294KIAA0196 gene product5.90E−051.34400763Target Exon2.50E−031.34440973AI656743Hs. 127514ESTs9.83E−031.34427674NM_003528Hs. 2178H2B histone family, member Q1.03E−041.34429837NM_003896Hs. 225939sialyltransferase 9 (CMP-NeuAc: lactosylc1.21E−041.34452887AI702223Hs. 107253hypothetical protein DKFZp761F2411.70E−031.34424321W74048Hs. 1765lymphocyte-specific protein tyrosine kin1.54E−051.34412347AW970026Hs. 73818ubiquinol-cytochrome c reductase hinge p1.38E−051.34425843BE313280Hs. 159627death associated protein 35.79E−051.34412710AA115819Hs. 187593ESTs1.53E−031.34422607Z45471Hs. 118684stromal cell-derived factor 21.25E−061.34441004AL137488Hs. 7615Homo sapiens mRNA; cDNA DKFZp434N2030 (f1.10E−041.34441229AW083064ESTs8.72E−051.33445718H79791Hs. 15227ESTs1.85E−061.33426032H63477Hs. 81188ESTs, Moderately similar to ALU1_HUMAN A7.52E−041.33414080AA135257Hs. 47783B aggressive lymphoma gene1.15E−041.33407309AA526438Hs. 281680peroxisomal trans 2-enoyl CoA reductase;9.94E−061.33409977AW805510Hs. 97056hypothetical protein FLJ216342.34E−041.33447347AA570056Hs. 122730ESTs, Moderately similar to KIAA1215 pro1.70E−071.33429682NM_006306Hs. 211602SMC1 (structural maintenance of chromoso6.55E−031.33428023AL038843Homo sapiens cDNA; FLJ23602 fis, clone L1.70E−031.33412677AW029608Hs. 17384ESTs1.00E−031.33424967AI188435RAB27A, member RAS oncogene family5.80E−051.33403608C3001199: gi|7494834|pir||T15308hypothet1.24E−031.33445292AV653264Hs. 13982Homo sapiens cDNA FLJ14666 fis, clone NT1.47E−041.33425882U83115Hs. 161002absent in melanoma 12.79E−091.33421767AW390255Hs. 108112histone fold protein CHRAC17; DNA polyme4.64E−051.33439908AI168031Hs. 155507ESTs1.11E−041.33421282AA286914Hs. 40782ESTs6.68E−061.33420838AW118210Hs. 42321ESTs2.32E−041.33453403BE466639Hs. 61779Homo sapiens cDNA FLJ13591 fis, clone PL4.15E−041.33426343NM_014642Hs. 169387KIAA0036 gene product1.55E−041.33445592AV654382Hs. 17947ESTs, Weakly similar to T16534 hypotheti1.22E−051.33446048AI272364Hs. 182081KIAA1811 protein4.47E−031.33415023AA932146Homo sapiens clone TCCCIA00164 mRNA sequ9.58E−071.33427726AI359144Hs. 143688Homo sapiens cDNA: FLJ23031 fis, clone L8.02E−071.33417947AA323563Hs. 325309hypothetical protein FLJ145962.89E−041.33434260AF121856Hs. 284291sorting nexin 62.30E−081.33437306AW270552ESTs1.55E−031.32410125AK000846Hs. 58679solute carrier family 7, (cationic amino1.60E−041.32451168D31770Hs. 26014activin A receptor, type II4.12E−031.32416315AA179483Hs. 73605ESTs1.38E−051.32411784AK001715Hs. 72085hypothetical protein FLJ108535.04E−081.32452144AA032197Hs. 102558Homo sapiens, clone MGC: 5352, mRNA, comp3.29E−051.32426012AA367507Hs. 75874pregnancy-associated plasma protein A7.29E−031.32425295AA431366Hs. 37251ESTs4.74E−041.32437986AA774575Hs. 121776testis expressed sequence 112.42E−031.32442332AI693251Hs. 8248Target CAT1.30E−051.32439208AK000299Hs. 180952dynactin 4 (p62)1.04E−051.32456073AA587775Hs. 66295multi-PDZ-domain-containing protein3.40E−051.32428738NM_000380Hs. 192803xeroderma pigmentosum, complementation g1.52E−051.32452479AI903573gb: RC-BT031-280199-114 BT031 Homo sapien5.19E−031.32452548AL050321Hs. 301532CRP2 binding protein3.09E−061.32450016AA249590Hs. 4747ESTs, Weakly similar to A28996 proline-r5.01E−061.32431675AA699965ESTs6.72E−041.32430261AA305127Hs. 4147hypothetical protein HT0234.00E−061.32411885AA452636Hs. 131057ESTs, Moderately similar to CRGD_HUMAN G2.36E−031.32426857AW581992Hs. 301434KIAA1387 protein7.58E−041.32407825NM_006152Hs. 40202lymphoid-restricted membrane protein3.74E−031.32441647AA534210Hs. 285280Homo sapiens cDNA: FLJ22096 fis, clone H5.30E−041.32409401AI201895Hs. 181309proteasome (prosome, macropain) subunit,2.42E−051.32437293AA836401Hs. 87860ESTs1.61E−041.32418780AA228078Hs. 255096ESTs2.84E−031.31431586AW971100Hs. 293189ESTs6.50E−041.31438979AW976218Hs. 32565ESTs2.44E−061.31458207T28472Hs. 7655U2 small nuclear ribonucleoprotein auxil1.40E−031.31453320AW450240Hs. 257274ESTs5.85E−031.31426796S78234Hs. 172405cell division cycle 271.75E−041.31432600AI821085gb: ns95a12.y5 NCl_CGAP_Pr3 Homo sapiens1.05E−031.31409572AL048938Hs. 54971hypothetical protein1.72E−081.31408758NM_003686Hs. 47504exonuclease 11.43E−041.31445648AW362302Hs. 164090ESTs4.03E−041.31432987AI864771Hs. 27954CD86 antigen (CD28 antigen ligand 2, B7-1.27E−061.31419943AA252111Hs. 15200ESTs9.35E−05131413274NM_004893Hs. 75258H2A histone family, member Y5.15E−041.31449365AW968261Hs. 118913ESTs, Moderately similar to T46371 hypot4.97E−031.31414411X54079Hs. 76067heat shock 27 kD protein 11.14E−061.31400271NM_004344: Homo sapiens centrin, EF-hand2.70E−041.31448071BE621584Hs. 6983Homo sapiens cDNA: FLJ22646 fis, clone H1.50E−051.31450289AI690295Hs. 243598ESTs6.16E−041.31417089H52280Hs. 18612Homo sapiens cDNA: FLJ21909 fis, clone H6.27E−101.31418876AA740616gb: ny97f11.s1 NCI_CGAP_GCB1 Homo sapiens2.19E−061.31443199AJ002030Hs. 9071progesterone membrane binding protein1.42E−061.31411529AA430348Hs. 317596Homo sapiens cDNA FLJ12927 fis, clone NT7.08E−031.31453407AW409745Hs. 32967Cockayne syndrome 1 (classical)2.06E−031.31416365U15131Hs. 79265suppression of tumorigenicity 54.90E−041.31440188AK001812Hs. 7036N-Acetylglucosamine kinase9.80E−051.31440779AI651910Hs. 128556ESTs9.12E−031.31400840Target Exon2.57E−051.31431663NM_016569Hs. 267182TBX3-iso protein9.11E−051.31409052AW898179Hs. 50123zinc finger protein 1895.93E−051.31446254BE179829Hs. 179852Homo sapiens cDNA FLJ12832 fis, clone NT9.61E−031.31407177W88954Hs. 203709ESTs3.43E−031.31417933X02308Hs. 82962thymidylate synthetase9.19E−061.31418207C14685Hs. 34772ESTs3.94E−031.31452139AA099969Hs. 16331Homo sapiens cDNA: FLJ21482 fis, clone C1.07E−071.31446641AL049229Hs. 15787Homo sapiens mRNA; cDNA DKFZp564O1016 (f2.24E−031.31407890AK001607Hs. 41127hypothetical protein FLJ132201.58E−061.30417928AA209344Hs. 30177ESTs5.53E−061.30446044H67567Hs. 13572calcium modulating ligand7.83E−091.30431921N46466Hs. 58879ESTs2.21E−051.30418020R35510Hs. 24990ESTs7.14E−041.30409619AK001015Hs. 55220BCL2-associated athanogene 23.09E−051.30425836AW955696Hs. 90960ESTs2.22E−061.30444735BE019923Hs. 243122hypothetical protein FLJ13057 similar to5.41E−041.30436535AW295687Hs. 254420ESTs1.12E−051.30415910U20350Hs. 78913chemokine (C-X3-C) receptor 18.53E−051.30445388AI925280Hs. 128777EST2.59E−061.30448965AF092134Hs. 22679CGI-24 protein3.13E−081.30445757AW449065Hs. 13264KIAA0856 protein7.74E−041.30414783AW069569unactive progesterone receptor, 23 kD8.35E−061.30448244BE613416Hs. 336425Homo sapiens, clone MGC: 17296. mRNA, com3.74E−061.30423032AI684746Hs. 119274RAS p21 protein activator (GTPase activa1.31E−041.30437527AI241019Hs. 145644ESTs3.77E−041.30408063BE086548Hs. 42346calcineurin-binding protein calsarcin-13.50E−041.30437065AL036450Hs. 103238ESTs1.43E−031.29446841AV660567gb: AV660567 GLC Homo sapiens cDNA clone4.29E−041.29418673NM_005582Hs. 87205lymphocyte antigen 64 (mouse) homolog (4.79E−041.29433671AW138797Hs. 13290619A24 protein1.26E−031.29420919M57892Hs. 100322carbonic anhydrase VI6.69E−041.29447094X65232Hs. 17364zinc finger protein 79 (pT7)2.23E−041.29417437U52682Hs. 82132interferon regulatory factor 49.46E−041.29453929AW190054gb: xl11d05.x1 NCI_CGAP_Ut4 Homo sapiens3.94E−031.29417782T10149Hs. 4243hypothetical protein FLJ126509.78E−071.29414438AI879277Hs. 76136thioredoxin7.32E−051.29459436AA323121gb: EST25881 Cerebellum II Homo sapiens c1.90E−041.29424650AW576156Hs. 250824Homo sapiens cDNA: FLJ23435 fis. clone H1.85E−041.29422843AA317826Hs. 188361gb: EST19817 Retina II Homo sapiens cDNA1.68E−041.29458389H70284Hs. 160152ESTs, Weakly similar to FPHU alpha-fetop2.39E−061.29443562AF118838Hs. 9599solute carrier family 25, member 13 (cit3.94E−041.29452617H22717Hs. 7174hypothetical protein FLJ227595.18E−041.29430488D19589Hs. 13453hypothetical protein FLJ147532.68E−041.29413568AA130381Hs. 180257ESTs1.58E−071.29458725AW970192Hs. 171942ras responsive element binding protein 12.03E−051.29403827C4000447*: gi|7705570|ref|NP_038851.1|KI9.50E−031.29440740H87832Hs. 7388ketch (Drosophila)-like 31.23E−051.29410434AF051152Hs. 63668toll-like receptor 25.21E−041.29409161W07662Hs. 50861sirtuin (silent mating type information5.83E−041.29440213AW246253Hs. 7043succinate-CoA ligase, GDP-forming, alpha1.79E−081.29443316AI478463Hs. 18443aldehyde dehydrogenase 8 family, member5.31E−051.29436139AA765786Hs. 120936ESTs5.79E−061.29427224AL135554sine oculis homeobox (Drosophila) homolo2.33E−061.29412520AA442324Hs. 795H2A histone family, member O1.46E−061.29452303R27257Hs. 57734heat shock 70 kD protein 1B1.14E−041.28420151AA255931Hs. 186704ESTs7.07E−061.28443601AI078554Hs. 42658ESTs1.61E−051.28450305AA009477Hs. 17572ESTs, Weakly similar to A46010 X-linked2.83E−051.28431255AA497043Hs. 115685ESTs9.13E−031.28419935AB020980Hs. 93832putative membrane protein1.02E−061.28429686AI871613Hs. 28538Homo sapiens cDNA: FLJ21086 fis, clone C3.27E−031.28442484AF075360gb: AF075360 Human fetal liver cDNA libra1.79E−031.28437916BE566249Hs. 20999hypothetical protein FLJ231422.64E−031.28451789AW291532Hs. 211297ESTs9.14E−031.28429529AA454190Hs. 24283ESTs, Moderately similar to reduced expr1.14E−031.28434658AI624436Hs. 310286ESTs8.22E−061.28418831AA488082gb: ab13e05.s1 Stratagene lung (937210) H8.61E−041.28429673AA884407Hs. 211595protein tyrosine phosphatase, non-recept3.23E−031.28414430AI346201Hs. 76118ubiquitin carboxyl-terminal esterase L16.36E−031.28448079R76981thyroid hormone receptor-associated prot7.51E−041.28408677AI279892Hs. 46801sorting nexin 144.91E−051.28456508AA502764Hs. 123469ESTs, Weakly similar to AF208855 1 BM-018.25E−051.28421290NM_014368Hs. 103137LIM homeobox protein 63.64E−041.28431829BE467737Hs. 146125ESTs1.95E−031.28431892AA521315Hs. 194424ESTs5.86E−031.28425587AB018332Hs. 158319KIAA0789 gene product1.52E−031.28428248AI126772Hs. 40479ESTs4.53E−031.28428580AF118452Hs. 184945gastrulation brain homeo box 22.37E−031.28447023AA356764Hs. 17109integral membrane protein 2A2.36E−051.28442287AW952703Hs. 8182synaptic nuclei expressed gene 1b6.33E−051.28421215AI868634Hs. 246358ESTs, Weakly similar to T32250 hypotheti2.84E−061.28410383AA084561Hs. 151093hypothetical protein DKFZp434G14159.07E−041.28446832NM_006314Hs. 16232connector enhancer of KSR-like (Drosophi1.67E−031.28453648W21493Hs. 28329hypothetical protein FLJ140053.53E−051.27450869R05747ESTs, Weakly similar to organic anion tr4.55E−051.27429722U48629Hs. 12731ESTs3.48E−031.27427247AW504221Hs. 174103integrin, alpha L (antigen CD11A (p180).7.71E−031.27415276U88666Hs. 78353SFRS protein kinase 22.57E−051.27437406AL390182Homo sapiens mRNA full length insert cDN8.76E−041.27451743AW074266Hs. 23071ESTs3.36E−061.27429379NM_014840Hs. 200598KIAA0537 gene product2.54E−031.27409205AI952884Hs. 14832ESTs, Moderately similar to unnamed prot4.80E−041.27433590N98410Hs. 48364Homo sapiens regulator of G-protein sign2.79E−071.27411096U80034Hs. 68583mitochondrial intermediate peptidase5.65E−031.27433658L03678Hs. 156110immunoglobulin kappa constant1.89E−031.27411202AW163223Hs. 315482ESTs, Weakly similar to I38022 hypotheti7.62E−061.27437612AA827715Hs. 105153Homo sapiens, clone IMAGE: 3461987, mRNA,5.16E−031.27450459AI697193Hs. 299254Homo sapiens cDNA: FLJ23597 fis, clone L1.63E−031.27458172BE007237gb: PM0-BN0139-050500-003-g09 BN0139 Homo6.27E−041.27437543H16443Hs. 7117glutamate receptor, ionotropic, AMPA 16.23E−081.27430958M81829Hs. 248160somatostatin receptor 16.82E−061.27408196AL034548Hs. 43627SRY (sex determining region Y)-box 221.40E−051.27422385BE549407Hs. 115823ribonuclease P, 40 kD subunit6.73E−051.27449736R50120Hs. 25367ESTs, Weakly similar to ALR H. sapiens1.37E−031.27414992D63302gb: HUM521A10B Clontech human placenta po4.14E−061.27438847AA827232Hs. 245362ESTs1.91E−031.27447445AW169369Hs. 158936ESTs1.04E−031.27452386R12499Hs. 20468ESTs1.20E−041.27410215AI694353ESTs, Weakly similar to AF205600 1 trans9.81E−031.27411115AW818453gb: RC1-ST0278-020300-015-d01 ST0278 Homo4.06E−031.27445589AI565993Hs. 222189ESTs5.35E−051.27433689AI802331Hs. 98289ESTs, Weakly similar to I38022 hypotheti2.84E−031.27449704AK000733Hs. 23900GTPase activating protein2.01E−051.27407604AW191962collagen, type VIII, alpha 26.07E−031.27453985N44545Hs. 251865ESTs3.21E−051.27409652BE208589Hs. 55601host cell factor 21.24E−041.26403809NM_024743*: Homo sapiens hypothetical pro2.01E−031.26417798Y09858Hs. 82577spindlin-like1.17E−031.26445813Z42023Hs. 106576alanine-glyoxylate aminotransferase 2-li5.56E−061.26447769AW873704Hs. 320831Homo sapiens cDNA FLJ14597 fis, clone NT1.34E−051.26451593AF151879Hs. 26706CGI-121 protein9.80E−061.26452780BE171598ESTs, Weakly similar to I38022 hypotheti5.91E−071.26438032BE045624Hs. 152992ESTs2.14E−031.26426925NM_001196Hs. 315689Homo sapiens cDNA: FLJ22373 fis, clone H5.81E−071.26445870AW410053Hs. 13406syntaxin 187.80E−101.26422043AL133649Hs. 110953retinoic acid induced 14.15E−041.26403142NM_002706*: Homo sapiens protein phosphat8.57E−051.26437109AW006781Hs. 5457hypothetical protein FLJ107382.23E−061.26443551AI654356Hs. 272792hypothetical protein FLJ203071.53E−061.26439161Y15164Hs. 6483oral-facial-digital syndrome 13.38E−041.26411143AI525989Hs. 9088hypothetical protein MGC32004.14E−041.26449082BE387561Hs. 22981DKFZP586M1523 protein2.46E−061.26441700AA233556Hs. 126908hypothetical protein FLJ129947.57E−031.26402813ENSP00000236495*: DJ1024N4.1 (novel Sodiu4.14E−031.26440043BE277457Hs. 30661hypothetical protein MGC46067.22E−051.26427629AA233210Hs. 179943ribosomal protein L116.93E−041.26437231BE303000Hs. 288929hypothetical protein FLJ13258 similar to8.51E−051.25433043W57554Hs. 125019lymphoid nuclear protein (LAF-4) mRNA1.39E−041.25408088AW157022Hs. 343551hypothetical protein FLJ225846.02E−051.25423598BE247600Hs. 155538ESTs1.11E−031.25452767AW014195Hs. 61472ESTs, Weakly similar to YAE6_YEAST HYPOT9.61E−061.25459245BE242623Hs. 31939manic fringe (Drosophila) homolog1.38E−031.25448984AW751955Hs. 22753hypothetical protein FLJ223183.98E−041.25409513AW966728Hs. 54642methionine adenosyltransferase II, beta1.85E−061.25425508AA991551Hs. 97013Homo sapiens, Similar to RIKEN cDNA 23104.63E−051.25408348AW269752Hs. 249828ESTs2.09E−031.25407783AW996872Hs. 172028a disintegrin and metalloproteinase doma4.38E−041.25451188AA054214Hs. 60684ESTs7.70E−031.25458311AF069478gb: AF069478 Homo sapiens astrocytoma lib3.91E−041.25439747AK001148Hs. 6671COP9 complex subunit 41.38E−051.25422481AL050163Hs. 117339DNAX-activation protein 101.87E−031.25417954AI633943Hs. 26613ESTs, Weakly similar to no similarities1.54E−031.25417831H16423Hs. 82685CD47 antigen (Rh-related antigen, integr7.34E−071.25411252AB018549Hs. 69328MD-2 protein1.16E−081.25403538Target Exon4.75E−031.25424464R68537Hs. 17962ESTs9.59E−051.25413533BE146973gb: QV4-HT0222-011199-019-e05 HT0222 Homo6.62E−071.25416959D28459Hs. 80612ubiquitin-conjugating enzyme E2A (RAD6 h2.81E−051.25445715AB012958Hs. 13137UV radiation resistance associated gene1.01E−051.25408738NM_014785Hs. 47313KIAA0258 gene product3.07E−051.25424931BE244070Hs. 1845MHC class 1 region ORF2.06E−071.24431118BE264901Hs. 250502carbonic anhydrase VIII4.32E−031.24450196AW956868Hs. 24608DKFZP564D177 protein1.20E−081.24452537AW247390Hs. 77735hypothetical protein FLJ116189.35E−041.24439653AW021103Hs. 6631hypothetical protein FLJ203738.13E−041.24407827BE278431Hs. 40323BUB3 (budding uninhibited by benzimidazo4.90E−051.24457300AW297436Hs. 40328Homo sapiens cDNA: FLJ21663 fis, clone C2.26E−041.24425575AB012851Hs. 158311Musashi (Drosophila) homolog 17.90E−031.24442410AW996503Hs. 197680ESTs6.94E−031.24402969ENSP00000217067*: DJ781B1.3 (A novel prot7.49E−051.24438899AF085833Hs. 135624ESTs3.90E−031.24416877BE386266Hs. 85658hypothetical protein FLJ234361.12E−051.24434664R98754Hs. 271119ESTs5.52E−031.24423846AW978332Hs. 133260hypothetical protein FLJ203545.39E−031.24442952AI743261Hs. 131860ESTs4.40E−031.24432201AI538613Hs. 298241Transmembrane protease, serine 32.00E−041.24439921AL110209Hs. 6770LCAT-like lysophospholipase4.54E−061.24431183NM_006855Hs. 250696KDEL (Lys-Asp-Glu-leu) endoplasmic retic2.31E−031.24407705AB023139Hs. 37892KIAA0922 protein8.97E−061.24406182Target Exon3.52E−031.24433394AI907753Hs. 93810cerebral cavernous malformations 15.10E−061.24451687AL041260Hs. 26837Homo sapiens mRNA; cDNA DKFZp586K1123 (f1.55E−041.24456497AW967956Hs. 123648ESTs, Weakly similar to AF108460 1 ubinu1.58E−041.24408392U28831Hs. 44566KIAA1641 protein1.52E−031.24446501AI302616ESTs1.06E−041.24456023R00028Hs. 274344gb: ye70a06.s1 Soares fetal liver spleen8.92E−041.24433215AB040912Hs. 191098hypothetical protein FLJ115981.73E−041.24415261T40928Hs. 8346ESTs4.69E−041.24414408BE294783Hs. 279497hypothetical protein MGC46383.34E−041.24407478L77559gb: Homo sapiens DGS-B partial mRNA.6.01E−031.24406364Target Exon2.36E−031.24445006W91903Hs. 124814ESTs1.24E−031.24411821BE299339Hs. 72249three-PDZ containing protein similar to1.81E−051.24430275Z11773Hs. 237786zinc finger protein 1871.54E−031.24445932BE046441Hs. 333555Homo sapiens clone 24859 mRNA sequence1.72E−031.24409324W76202Hs. 9280lipoic acid synthetase8.62E−041.24450371R34926son of sevenless (Drosophila) homolog 12.33E−041.24419309AW574793Hs. 321687Homo sapiens. Similar to F-box only prot8.89E−041.24436343H08024Hs. 5148FLN29 gene product1.34E−051.24413654AA331881Hs. 75454peroxiredoxin 31.24E−041.23420776W38672Hs. 184067ESTs8.11E−041.23414496W73853ESTs3.85E−041.23434521NM_002267Hs. 3886karyopherin alpha 3 (importin alpha 4)5.40E−051.23434158T86534Hs. 14372ESTs6.53E−041.23430367AW607425Hs. 239938hypothetical protein1.32E−031.23447783AF054178Hs. 19561NM_005001: Homo sapiens NADH dehydrogenas2.94E−041.23459697AA406062Hs. 98002ESTs1.09E−031.23434519AA635727Hs. 136581ESTs, Weakly similar to ARNO_HUMAN ARF N1.26E−041.23449843R85337Hs. 24030solute carrier family 31 (copper transpo1.12E−051.23457000NM_006750Hs. 172278syntrophin, beta 2 (dystrophin-associate3.72E−031.23423743AB023148Hs. 173373KIAA0931 protein1.13E−031.23457231AI472022Hs. 301959proline synthetase co-transcribed (bacte8.57E−051.23433192AB040880Hs. 98968ESTs8.41E−051.23444636T96667Hs. 17877ESTs8.18E−071.23430289AK001952Hs. 238039hypothetical protein FLJ110905.85E−031.23459647R34107Hs. 321450pregnancy specific beta-1-glycoprotein 11.04E−041.23427729AB033100Hs. 300646KIAA1274 protein (similar to mouse palad1.97E−031.23414884R54418Hs. 183745hypothetical protein FLJ134567.32E−071.23448554NM_016169Hs. 21431suppressor of fused2.82E−061.23413116AA127161Hs. 4783hypothetical protein FLJ220356.43E−051.23453563AW608906. compHs. 181163hypothetical protein MGC56299.15E−031.23407955BE536739Hs. 109909ESTs3.61E−041.23405232NM_015832: Homo sapiens methyl-CpG bindin2.82E−031.23457634AA609738Hs. 16525ESTs5.66E−051.23455100BE160198gb: QV1-HT0413-010200-059-h03 HT0413 Homo2.91E−031.23419424BE041820Hs. 38516Homo sapiens, clone MGC: 15887, mRNA, com4.91E−041.23408770AW270608Hs. 170195bone morphogenetic protein 7 (osteogenic1.86E−031.23433854AA610649Hs. 333239ESTs5.52E−051.23440453AA885523Hs. 157003ESTs6.78E−031.23439452AA918317Hs. 57987B-cell CLL/lymphoma 11B (zinc finger pro3.39E−031.22403417C18000266*: gi|7243027|dbj|BAA92561.1|(A5.34E−031.22452582AL137407Hs. 29911Homo sapiens mRNA; cDNA DKFZp434M232 (fr4.03E−041.22410043D30612Hs. 58167zinc finger protein 2821.77E−061.22405257Target Exon1.89E−031.22441869NM_003947Hs. 8004huntingtin-associated protein interactin7.73E−031.22442103AA333367Hs. 8088similar to S. cerevisiae Sec6p and R. no3.85E−031.22450256AA286887Hs. 24724MFH-amplified sequences with leucine−ric7.06E−071.22444693AB002327Hs. 11711KIAA0329 gene product8.55E−051.22429574BE268321Hs. 208912hypothetical protein MGC8615.48E−031.22436906H95990Hs. 181244major histocompatibility complex, class7.11E−061.22444476AF020038Hs. 11223isocitrate dehydrogenase 1 (NADP), solub2.03E−031.22438393AA351815Hs. 50740Homo sapiens cDNA: FLJ22272 fis, clone H3.30E−081.22422267AB033044Hs. 114012KIAA1218 protein1.57E−051.22436796BE515260Hs. 5320hypothetical protein9.92E−051.22431328AA502999Hs. 291591ESTs1.24E−041.22450273AW296454Hs. 24743hypothetical protein FLJ201716.29E−031.22457284AF102850Hs. 227933Alg5, S. cerevisiae, homolog of3.22E−051.22417767BE242241Hs. 82542acyloxyacyl hydrolase (neutrophil)1.33E−051.22438010BE243045Hs. 5990tetratricopeptide repeat domain 41.84E−061.22408981AW500797Hs. 49427Gem-interacting protein1.50E−051.22403585Target Exon6.89E−051.22433556W56321Hs. 111460calcium/calmodulin-dependent protein kin2.49E−061.22418077AA112036Hs. 83419KIAA0252 protein8.72E−051.22411806AW864547gb: PM4-SN0016-120500-003-b12 SN0016 Homo9.46E−041.22452664AA398859Hs. 18397hypothetical protein FLJ232211.42E−081.22432458AI968598Hs. 78768malignant cell expression-enhanced gene/9.31E−071.22453122AI953717Hs. 232214ESTs3.42E−041.22424914AA348410Hs. 119065ESTs3.37E−041.22412633AF001691Hs. 74304periplakin2.95E−041.21451254AI571016Hs. 172967ESTs6.90E−041.21439136AA830610Hs. 209011ESTs1.64E−031.21420231R06866Hs. 19813ESTs4.37E−041.21428720T90468Hs. 178154ESTs7.33E−041.21452032BE244005Hs. 27610retinoic acid-and interferon-inducible3.55E−051.21422032AA476966Hs. 110857polymerase (RNA) III (DNA directed) poly6.42E−031.21430107AA465293Hs. 105069ESTs2.55E−041.21442202BE272862Hs. 106534hypothetical protein FLJ226251.28E−051.21429012AW629596Hs. 194726BCL2-associated athanogene 49.71E−051.21432676AI187366gb: qf29c01.x1 Soares_testis_NHT Homo sap2.09E−051.21407946AA226495Hs. 154292ESTs2.27E−051.21458216AW024282Hs. 104938hypothetical protein MGC159065.72E−071.21403832C4000013*: gi|11427234|ref|XP_009399.1|z2.50E−031.21448334AA767011Hs. 119960DKFZP727G051 protein6.83E−031.21437378AI198823Hs. 160473ESTs7.48E−041.21425604U94320Hs. 158330neuropeptide Y receptor Y55.70E−051.21423024AA593731Hs. 325823ESTs, Moderately similar to ALU5_HUMAN A6.88E−041.21423609AA328348Hs. 218289ESTs5.96E−041.21439317AF086127Hs. 50600ESTs, Weakly similar to T47156 hypotheti1.32E−041.21441765AI474058Hs. 170514ESTs5.09E−031.21425251Z22521Hs. 155342protein kinase C, delta3.47E−071.21452185AA076467Hs. 246218Homo sapiens cDNA: FLJ21781 fis, clone H2.31E−031.21433018AI669760Hs. 188881ESTs4.27E−051.21450622AI660285Hs. 58210ESTs, Highly similar to ITH4_HUMAN INTER1.13E−041.21453314R05604Hs. 19507ESTs9.85E−031.21431375AI767882Hs. 264347ESTs1.96E−051.21435521W23814Hs. 6361mitogen-activated protein kinase kinase6.96E−071.21422642AA314041gb: EST185894 Colon carcinoma (HCC) cell2.63E−031.21429855AW385597Hs. 199630ESTs, Weakly similar to B34087 hypotheti8.01E−031.21412141AI183838Hs. 48938hypothetical protein FLJ218022.02E−031.21423799AW026300Hs. 13290619A24 protein6.14E−031.21432377AA534670ESTs, Weakly similar to 2004399A chromos2.76E−031.21450663H43540Hs. 25292ribonuclease HI, large subunit2.34E−031.21435561AA351978Hs. 4943hepatocellular carcinoma associated prot9.96E−041.21415660AI909007Hs. 78563ubiquitin-conjugating enzyme E2G 1 (homo4.03E−041.21432387BE094222Hs. 274457Homo sapiens mRNA; cDNA DKFZp434H2226 (f1.53E−031.21458443AV647010Hs. 27glycine dehydrogenase (decarboxylating;9.56E−041.21442281N34742Hs. 170065Homo sapiens cDNA FLJ13492 fis, clone PL6.38E−061.21428553AA181641Hs. 184907G protein-coupled receptor 13.19E−041.21431604AF175265Hs. 264190vacuolar protein sorting 35 (yeast homol1.69E−051.20458468AV648170Hs. 58756ESTs8.67E−041.20427546AA405280Hs. 36793hypothetical protein FLJ231882.59E−041.20402964NM_022095*: Homo sapiens hypothetical C2H1.55E−041.20442818AK001741Hs. 8739hypothetical protein FLJ108793.66E−031.20417957H53497Hs. 83006CGI-139 protein2.93E−061.20445298AW295700ESTs1.03E−031.20437594AA761431Hs. 74335heat shock 90 kD protein 1, beta1.32E−031.20414704NM_014757Hs. 76986mastermind (Drosophila), homolog of3.10E−031.20420339AW968259Hs. 186647ESTs6.90E−061.20436754AI061288Hs. 133437ESTs3.43E−031.20422798R92347Hs. 34574ESTs, Weakly similar to ALU1_HUMAN ALU S254E−031.20444059R69743Hs. 116774integrin, alpha 19.70E−061.20433032AI084066Hs. 20072myosin regulatory light chain interactin9.91E−061.20408761AA057264Hs. 238936ESTs, Weakly similar to (defline not ava3.30E−071.20443791N64458Hs. 143345ESTs1.29E−051.20434359AF129536Hs. 284226F-box only protein 66.18E−061.20413277H24177Hs. 75262cathepsin O1.91E−071.20445464AW172389Hs. 249999ESTs1.75E−031.20401060Target Exon3.25E−051.20407588AW969534Hs. 267905hypothetical protein FLJ104221.12E−061.20415245N59650Hs. 27252ESTs1.05E−031.20456577BE246444Hs. 283685hypothetical protein FLJ203962.94E−031.20456761D59899Hs. 127842CGI-1428.55E−031.20446868AV660737ESTs6.71E−031.20421506BE302796Hs. 105097thymidine kinase 1, soluble2.57E−041.20426181AA371422Hs. 334371hypothetical protein MGC130966.57E−051.20417177NM_004458Hs. 81452fatty-acid-Coenzyme A ligase, long-chain1.65E−041.20425199R97184gb: yq58f12.r1 Soares fetal liver spleen6.03E−031.20414709AA704703Hs. 77031Sp2 transcription factor1.06E−041.20406350Target Exon5.04E−031.20418253AA215539Hs. 283643Homo sapiens cDNA FLJ11606 fis, clone HE1.06E−041.20419367AW132011Hs. 118236Homo sapiens cDNA: FLJ22132 fis, clone H3.41E−041.19420517AB011115Hs. 98507KIAA0543 protein1.61E−041.19432441AW292425Hs. 163484ESTs6.62E−051.19434163AW974720Hs. 25206group XII secreted phospholipase A22.63E−031.19408688AI634522Hs. 152925KIAA1268 protein4.18E−051.19434560R13052Hs. 3964Homo sapiens clone 24877 mRNA sequence6.15E−031.19420468NM_006980Hs. 97996transcription termination factor, mitoch5.07E−041.19409646AW161391Hs. 709deoxycytidine kinase8.94E−051.19431234AL389985Hs. 301637zinc finger protein 2586.12E−041.19449259AW452058Hs. 257519ESTs6.09E−051.19420104U09825Hs. 1287zinc finger protein 1733.24E−081.19436692AW243158Hs. 5297DKFZP564A2416 protein6.42E−101.19452715Z21093Hs. 30352ribosomal protein S6 kinase, 52 kD, polyp8.38E−061.19412372R65998Hs. 285243hypothetical protein FLJ220298.03E−041.19452007AA426234Hs. 34906ESTs, Weakly similar to T17210 hypotheti1.59E−071.19437943NM_016353Hs. 5943rec6.25E−051.19452983L32140Hs. 531afamin8.93E−061.19422283AW411307Hs. 114311CDC45 (cell division cycle 45, S.cerevis2.07E−041.19422061BE178434Hs. 267995ESTs, Moderately similar to G02654 ribos2.33E−031.19439318AW837046Hs. 6527G protein-coupled receptor 564.41E−031.19428972AK001470Hs. 194692cysteine desulfurase5.56E−031.19418384AW149266Hs. 25130Homo sapiens cDNA FLJ14923 fis, clone PL1.66E−031.19409442AA310162Hs. 169248cytochrome c8.53E−051.19411299BE409857Hs. 69499hypothetical protein1.40E−061.19441307AW071696Hs. 209065hypothetical protein FLJ142251.90E−061.19421413AI826128Hs. 55209ESTs, Weakly similar to A49364 59 protei1.64E−041.19418560AW291332Hs. 194414ESTs9.68E−031.19428873AI701609Hs. 98908ESTs8.52E−031.19433330AW207084Hs. 132816hypothetical protein MGC148011.55E−041.19424212NM_005814Hs. 143131glycoprotein A33 (transmembrane)2.16E−031.19444445AA342329Hs. 115920Homo sapiens cDNA: FLJ22816 fis, clone K1.88E−071.19412994D32257Hs. 75113general transcription factor IIIA1.32E−041.19439077AW297762Hs. 255690ESTs2.12E−031.19437714AA766346ESTs4.83E−041.19407142AA412535gb: zt99b10.s1 Soares_testis_NHT Homo sap3.74E−041.18407331AI570416Hs. 99910phosphofructokinase, platelet5.67E−031.18447960AW954377Hs. 26412ring finger protein 269.47E−041.18428829R14050Hs. 194051Homo sapiens mRNA; cDNA DKFZp566B213 (fr1.47E−051.18426888H41090Hs. 97373ESTs6.98E−061.18418539AA224753Hs. 159500ESTs1.06E−051.18435037AA355113Hs. 35380x 001 protein1.26E−071.18416987D86957Hs. 80712KIAA0202 protein8.14E−051.18428828AL117508Hs. 194035KIAA0737 gene product2.66E−061.18427433D82070Hs. 177972chromosome 4 open reading frame 62.70E−051.18434707AI378570Hs. 116397ESTs5.75E−041.18445266BE222118Hs. 12479associated molecule with the SH3 domain3.36E−051.18427792M63928Hs. 180841tumor necrosis factor receptor superfami4.60E−031.18403056eukaryotic translation elongation factor5.76E−041.18415080X81789Hs. 77897splicing factor 3a, subunit 3, 60 kD4.92E−041.18418473AA243335Hs. 309943nuclear body protein Sp1402.69E−031.18419270NM_005232Hs. 89839EphA12.89E−031.18419856AK001401Hs. 93391hypothetical protein FLJ105395.31E−041.18446207AW968535Hs. 14328hypothetical protein FLJ200711.49E−051.18416999AW195747Hs. 21122hypothetical protein FLJ11830 similar to9.52E−061.18415013R35274Hs. 24951ESTs1.63E−041.18426143BE379836proteasome (prosome, macropain) subunit,3.16E−071.18439815AA206079Hs. 6693hypothetical protein FLJ204204.52E−071.18412723AA648459Hs. 335951hypothetical protein AF3012222.94E−041.18420882AA830074Hs. 291915ESTs5.89E−031.18434198AF119849Hs. 283028hypothetical protein PRO15982.28E−041.18414602AW630088Hs. 76550Homo sapiens mRNA; cDNA DKFZp564B1264 (f5.33E−061.18425729L22647Hs. 159360prostaglandin E receptor 1 (subtype EP1)5.73E−031.18420123W24330Hs. 5301hypothetical protein FLJ149365.77E−051.18456495NM_003403Hs. 97496YY1 transcription factor1.59E−051.18440350AA883475Hs. 257103ESTs5.34E−031.18437374AL359571Hs. 44054ninein (GSK3B interacting protein)1.17E−061.17424006AF054815Hs. 137548CD84 antigen (leukocyte antigen)1.93E−041.17444372AW377983Hs. 298140Homo sapiens cDNA: FLJ22502 fis, clone H2.17E−071.17426523S68616Hs. 170222solute carrier family 9 (sodium/hydrogen1.42E−051.17410388AA831460KIAA0758 protein2.88E−031.17421660R17959Hs. 106529CGI-65 protein8.90E−031.17434759BE279230Hs. 4113S-adenosylhomocysteine hydrolase like 19.02E−041.17459122AI002968Hs. 235402ESTs, Weakly similar to T26525 hypotheti1.59E−031.17450850AA648886Hs. 151999ESTs5.32E−061.17416326AF186780Hs. 79219RalGDS-like gene; KIAA0959 protein9.26E−031.17450038AA005159Hs. 188489ESTs3.51E−031.17447315AI613123Hs. 342148ESTs1.28E−051.17426773NM_015556Hs. 172180KIAA0440 protein9.85E−031.17443035Z45822Hs. 8906Homo sapiens clone 24889 mRNA sequence3.24E−061.17420705A8032251Hs. 99872fetal Alzheimer antigen9.87E−041.17431661AB037830Hs. 267150KIAA1409 protein7.91E−061.17435314AA677891Hs. 272138ESTs, Weakly similar to ALU1_JHUMAN ALU S9.44E−041.17439798AA203345Hs. 102178syntaxin 166.96E−041.17430629AA482392Hs. 275184ESTs, Weakly similar to ATS1_HUMAN ADAM-1.78E−031.17450612AL359946Hs. 14779acetyl-CoA synthetase2.31E−041.17416771AA868956Hs. 13794sorting nexin 52.18E−031.17426244AI064808Hs. 168289succinate dehydrogenase complex, subunit1.87E−051.17451338AW612322Hs. 19131transcription factor Dp-2 (E2F dimerizat3.41E−051.17443209AI040125Hs. 150521ESTs1.48E−031.17458455AV648310Hs. 213488ESTs2.67E−031.17446975BE246446Hs. 16695ubiquitin-activating enzyme E1-like3.39E−071.17418796AA228351Hs. 34060ESTs1.16E−041.17453209AW887701Hs. 32356hypothetical protein FLJ206281.00E−041.17416240NM_001981Hs. 79095epidermal growth factor receptor pathway1.15E−061.17449773R76294Hs. 302383ESTs7.90E−031.17435918AF263538Hs. 86232growth differentiation factor 32.72E−031.17448694AA478756Hs. 194477E3 ubiquitin ligase SMURF21.00E−051.17445866H20899Hs. 13399Homo sapiens clone 25032 mRNA sequence1.92E−051.17411122F00809Hs. 172004coactivator-associated arginine methyltr4.93E−041.17426307F24978Hs. 297962ESTs1.19E−051.17442107AI692286ESTs7.80E−031.17416133NM_001683Hs. 89512ATPase, Ca transporting, plasma membrane7.02E−041.17445784AI253155Hs. 146065ESTs1.22E−041.17427750AA693991Hs. 224737ESTs1.79E−031.16406341C5000881*: gi|2661590|emb|CAA15709.1|(AL5.21E−051.16430006BE144167Hs. 321056hypothetical protein similar to RNA-bind2.21E−071.16407821AA346172Hs. 195614ESTs2.93E−041.16452299AW206330hypothetical protein FLJ109012.86E−031.16457701AW855466Hs. 271866ESTs, Weakly similar to ALU 1_HUMAN ALU S4.53E−051.16446106AA377165Hs. 44833ESTs2.32E−051.16415382AI743539Hs. 72465ESTs, Weakly similar to non-lens beta ga1.22E−031.16426261AW242243Hs. 168670peroxisomal farnesylated protein1.89E−051.16440248AA876138ESTs8.70E−041.16452600AI910842Hs. 103381ESTs2.27E−041.16433023AW864793thrombospondin 16.72E−061.16404694Target Exon6.77E−031.16402668C1003810: gi|3766132|gb|AAC64377.1| (AC001.80E−031.16409141AW341059Hs. 250664EST2.66E−031.16418757AI864193Hs. 169728hypothetical protein FLJ131501.50E−031.16431828AA572994Hs. 325489ESTs3.69E−061.16410086AI268405Hs. 13467hypothetical protein MGC32516.24E−061.16435515N40080Hs. 6879DC13 protein4.50E−041.16458965AA010319Hs. 60389ESTs1.59E−041.16442127AW276851Hs. 8107Homo sapiens mRNA; cDNA DKFZp586B0918 (f7.48E−051.16408127AW957168Hs. 289064hypothetical protein FLJ222511.95E−071.16446259AA425204Hs. 334721hypothetical protein FLJ133911.62E−031.16405296C7000453: gi|7301410|gb|AAF56536.1| (AE004.75E−041.16410184AW503667Hs. 59545ring finger protein 153.38E−061.16445893AI610702Hs. 202613ESTs, Weakly similar to TRHY_HUMAN TRICH6.11E−081.16432599R99849Hs. 269434Homo sapiens cDNA FLJ12206 fis, clone MA5.84E−051.16417601NM_014735Hs. 82292KIAA0215 gene product1.84E−051.16443804AL135352Hs. 255883ESTs, Weakly similar to I38022 hypotheti1.76E−041.16422302AF018253Hs. 114676tumor necrosis factor receptor superfami3.44E−041.16416215BE397505Hs. 79081protein phospbatase 1, catalytic subunit4.93E−081.16433037NM_014158Hs. 279938HSPC067 protein1.44E−061.16449971AA807346Hs. 288581Homo sapiens cDNA FLJ14296 fis, clone PL4.28E−061.16447313U92981Hs. 18081Homo sapiens clone DT1P1B6 mRNA, CAG rep1.16E−031.16430661AC005551Hs. 130714Homo sapiens HSPC323 mRNA, partial cds6.11E−041.16445817NM_003642Hs. 13340histone acetyltransferase 13.99E−041.16430665BE350122Hs. 157367ESTs, Weakly similar to I78885 serine/th8.58E−061.16428019W85913Hs. 30827insulin receptor substrate 3-like8.44E−031.16440351AF030933Hs. 7179RAD1 (S. pombe) homolog3.92E−051.15426455AK002196Hs. 264076Homo sapiens cDNA FLJ11334 fis, clone PL1.58E−031.15448905BE242730Hs. 79093EBNA-2 co-activator (100 kD)3.95E−031.15429966BE081342Hs. 283037HSPC039 protein2.93E−041.15450353AI244661Hs. 103296ESTs, Weakly similar to S65657 alpha-1C-3.41E−041.15432650D00860Hs. 56phosphoribosyl pyrophosphale synthetase4.23E−071.15453085AW954243KIAA0251 protein1.99E−031.15407832AW976516Hs. 283707Homo sapiens cDNA: FLJ21354 fis, clone C7.53E−041.15442159AW163390Hs. 278554heterochromatin-like protein 11.35E−051.15444635Al184268Hs. 339665ESTs2.17E−031.15432541AW131368ESTs9.15E−041.15414134X60188Hs. 861mitogen-activated protein kinase 34.95E−041.15437644AA748575Hs. 136748lectin-like NK cell receptor2.69E−061.15409193AA131483gb: zo08e05.r1 Stratagene neuroepithelium4.60E−031.15422451AA310753Hs. 42491ESTs, Weakly similar to S65657 alpha-1C-2.28E−041.15402729Target Exon7.41E−051.15447505AL049266Hs. 18724Homo sapiens mRNA; cDNA DKFZp564F093 (fr1.57E−041.15458140BE268806gb: 601139917F1 NIH_MGC_8 Homo sapiens cD2.74E−051.15424670W61215Hs. 116651epithelial V-like antigen 12.25E−061.15405122NM_006798*: Homo sapiens UDP glycosyltran6.77E−061.15416022R44729Hs. 21286ESTs6.32E−041.15421772Z24958Hs. 108139zinc finger protein 2122.77E−071.15422965H90576Hs. 28113ESTs1.18E−031.15430464BE393070Hs. 188541ESTs2.44E−031.15416710AI268325Hs. 54890hypothetical protein FLJ235902.20E−031.15448366AI970841Hs. 271269ESTs2.44E−031.15428464BE615473Hs. 184447sirtuin (silent mating type information9.06E−041.15427879AA435939Hs. 98186chromosome 21 open reading frame 222.46E−041.15417226AW505054Hs. 4283ESTs3.24E−041.15447757AA071276Hs. 19469KIAA0859 protein7.22E−041.15407575W27235Hs. 64311a disintegrin and metalloproteinase doma4.80E−041.15446064AV656376Hs. 282851ESTs, Weakly similar to I38022 hypotheti1.02E−03115425372NM_14663Hs. 155983KIAA0677 gene product4.28E−041.15402737Target Exon4.79E−041.15428107AA421443Hs. 104835ESTs2.00E−041.15434667D61329Hs. 32196mitochondrial ribosomal protein L363.49E−061.15423067AA321355Hs. 285401colony stimulating factor 2 receptor, be2.94E−031.15445208AI216103ESTs1.56E−031.15439581AI539852Hs. 118738KIAA0800 gene product6.14E−031.15446012AV656098Hs. 172382betainE-homocysteine methyltransferase 21.27E−041.15437234AI472213Hs. 247711hypothetical protein FLJ205576.90E−031.15408203AA053137Hs. 42390nasopharyngeal carcinoma susceptibility6.04E−051.15456352AA233094Hs. 191517ESTs3.71E−031.15422497D29642Hs. 1528KIAA0053 gene product9.72E−051.15414762AW068349Hs. 77257KIAA0068 protein9.50E−051.15458799AI688547ESTs3.89E−031.15434271AA897778Hs. 201677ESTs, Weakly similar to Z257_HUMAN ZINC6.94E−031.15410423AW402432Hs. 63489protein tyrosine phosphatase, non-recept4.56E−041.15434421AI915927Hs. 34771ESTs2.00E−041.14423623AB011117Hs. 129943KIAA0545 protein1.39E−091.14404231Target Exon2.75E−031.14423717AA330036Hs. 152003ESTs8.79E−031.14453370AI470523Hs. 139336ATP-binding cassette, sub-family C (CFTR6.17E−051.14420820W26096Homo sapiens, clone IMAGE: 4179482, mRNA1.41E−091.14448959AI610343Hs. 293267ESTs2.10E−041.14423582BE000831Hs. 23837Homo sapiens cDNA FLJ11812 fis, clone HE6.93E−031.14428310AF100749Hs. 183655sec22 homolog5.55E−061.14405287Target Exon7.91E−041.14426532AA486725hypothetical protein FLJ204897.45E−041.14423494AW504365Hs. 24143Wiskott-Aldrich syndrome protein interac1.50E−031.14446161AA628206Hs. 14125p53 regulated PA26 nuclear protein1.05E−061.14433481AL040235Hs. 3346hypothetical protein FLJ112803.23E−031.14434072H70854Homo sapiens PRO1082 mRNA, complete cds7.75E−041.14427691AW194426Hs. 20726ESTs3.63E−041.14437825AA769123Hs. 291947ESTs9.72E−041.14430255AK000703Hs. 323822Homo sapiens mRNA for KIAA1551 protein,3.00E−041.14414872U82010Hs. 77513COX10 (yeast) homolog. cytochrome c oxid4.26E−031.14439741BE379646Hs. 6904Homo sapiens mRNA full length insert cDN7.07E−061.14417025AA262170Hs. 80917adaptor-related protein complex 3, sigma4.41E−051.14418917X02994Hs. 1217adenosine deaminase2.96E−031.14426367AW611704Hs. 48578ESTs7.75E−031.14423855AA331761Hs. 254859ESTs5.33E−051.14450832AW970602Hs. 105421ESTs4.74E−041.14449028BE616023Hs. 25298KIAA1813 protein5.52E−041.14426384AI472078Hs. 303662hypothetical protein FLJ13189 (FLJ13189)1.75E−031.14429652AA766810Hs. 259290ESTs6.17E−031.14415205H71616Hs. 135233ESTs5.85E−061.14436860H12751Hs. 5327PRO1914 protein1.93E−061.14427973AW851123Hs. 98286gb: IL3-CT0220-150200-070-H02 CT0220 Homo1.93E−031.14 ,426940AA393537Hs. 98347ESTs, Weakly similar to JC5308 testis-sp2.52E−031.14455588AI129903Hs. 74669vesicle-associated membrane protein 5 (m4.99E−061.14422532AL008726Hs. 118126protective protein for beta-galactosidas1.22E−031.14431316AA502663Hs. 145037ESTs1.70E−041.14408329AF155510Hs. 44227heparanase7.40E−031.14457415AK000010Hs. 258798hypothetical protein FLJ200039.74E−041.14409509AL036923Hs. 322710ESTs8.97E−031.14414713BE465243Hs. 12664ESTs8.42E−031.13422567AF111178Hs. 118407glypican 64.15E−081.13457346AI734178Hs. 93379ESTs, Highly similar to 1207289A reverse7.22E−031.13449559AW614016Hs. 282131ESTs8.76E−051.13447932AA837474Hs. 20021vesicle-associated membrane protein 1 (s3.47E−061.13434981AW182577Hs. 293077ESTs1.26E−031.13452186M120761Hs. 28307WW domain binding protein 4 (formin bind6.11E−031.13442161AI733230Hs. 128805ESTs6.46E−041.13438580AA811262Hs. 299202ESTs6.12E−041.13424941AA128376Hs. 153884ATP binding protein associated with cell7.86E−061.13424867AI024860Hs. 153591Not56 (D. melanogaster)-like protein1.15E−041.13455063AW854160gb: RC3-CT0254-060400-029-f09 CT0254 Homo4.21E−041.13431874AW610031Hs. 323914translocase of inner milochondrial membr6.87E−041.13405695Target Exon5.77E−031.13424065NM_016388Hs. 138701T-cell receptor interacting molecule9.24E−051.13441192AA526626Hs. 7736mitochondrial ribosomal protein L273.59E−051.13450316W84446Hs. 226434hypothetical protein M6C46435.68E−051.13456859X92521Hs. 154057matrix metalloproteinase 193.33E−031.13421639NM_012082Hs. 106309Friend of GATA25.03E−031.13427844AV658308Hs. 2210thyroid hormone receptor interactor 34.55E−051.13412019AA485890Hs. 69330Homo sapiens cDNA FLJ13835 fis. clone TH4.85E−061.13441892AB028981Hs. 8021KIAA1058 protein7.83E−061.13416033NM_012201Hs. 78979Golgi apparatus protein 11.08E−041.13450455AL117424Hs. 25035chloride intracellular channel 43.45E−051.13406658AI920965Hs. 77961major histocompatibility complex, class3.18E−051.13406827AA971409gb: op92c04.s1 NCI_CGAP_Lu5 Homo sapiens2.85E−051.13457065AI476318Hs. 192480ESTs4.47E−031.13425538BE270918Hs. 164026Homo sapiens, clone IMAGE: 3534875, mRNA,1.63E−031.13416852AF283776Hs. 80285Homo sapiens mRNA; cDNA DKFZp586C1723 (f4.61E−041.13422929AA356694Hs. 94011ESTs, Weakly similar to MGB4_HUMAN MELAN1.74E−041.13435274AA887547Hs. 150905ESTs7.03E−061.13415825Y18024Hs. 78877inositol 1,4,5-trisphosphate 3-kinase B6.01E−041.13416957U86749Hs. 80598transcription elongation factor A (Sll),4.33E−061.13420721AA927802Hs. 159471ZAP3 protein3.70E−031.13421313NM_014923Hs. 103329KIAA0970 protein1.14E−041.13420885NM_005652Hs. 100030telomeric repeat binding factor 21.65E−051.13437156AI916600Hs. 121194Homo sapiens cDNA: FLJ21569 fis, clone C1.03E−031.13436614AW104388Hs. 149091ESTs6.83E−031.13451591AA886446Hs. 23590solute carrier family 16 (monocarboxylic5.25E−041.13445977BE550048Hs. 145735ESTs7.77E−051.13401112NM_024997*: Homo sapiens hypothetical pro2.93E−031.13418096AA282660Hs. 193520ESTs3.07E−031.13410247AF181721Hs. 61345RU2S2.71E−031.13407754AA527348Hs. 288967Homo sapiens cDNA FLJ14105 fis, clone MA2.18E−031.13403671C4001270*: gi|7509005|pir||T26190 hypothe2.04E−041.13448294AI479918Hs. 192859ESTs5.40E−041.13414726BE466863Hs. 280099ESTs1.35E−041.13422489AA311216Hs. 183953ESTs3.48E−031.13429595AI910584Hs. 127639ESTs9.52E−041.13419854AW664873Hs. 87836Homo sapiens PAC clone RP5-1087M19 from1.17E−051.12418522AA605038Hs. 7149Homo sapiens cDNA: FLJ21950 (is, clone H2.05E−051.12452717AW160399Hs. 30376hypothetical protein9.03E−041.12445495BE622641Hs. 38489ESTs, Weakly similar to I38022 hypotheti6.31E−051.12438724AW612553Hs. 114670Human DNA sequence from clone RP11-16L217.89E−081.12426110NM_002913Hs. 166563replication factor C (activator 1) 1 (145.22E−091.12416411AA180188Hs. 10706ADP-ribosylation factor-like 41.05E−041.12422614AI908006Hs. 295362Homo sapiens cDNA FLJ14459 fis, clone HE5.79E−041.12438650AA843728Hs. 123533ESTs5.65E−031.12437175AW968078Hs. 87773protein kinase, cAMP-dependent, catalyti2.02E−O61.12445278BE391904Hs. 12482glyceronephosphate O-acyltransferase1.81E−031.12424577AI346124Hs. 28813ESTs, Weakly similar to A23772 UNE-1 hy1.80E−031.12410575BE207480Hs. 6994Homo sapiens cDNA: FLJ22044 fis, clone H2.56E−061.12424779AL046851Hs. 153053CD37 antigen7.40E−031.12452057AW952005Hs. 14928hypothetical protein FLJ129032.36E−041.12427008Z45258Hs. 286013short coiled-coil protein2.52E−061.12417944AU077196Hs. 82985collagen, type V, alpha 26.04E−051.12443260AW896265Hs. 127310ESTs, Weakly similar to 1805352A splicin3.66E−051.12420152AW968080Hs. 171553Homo sapiens clone 24630 mRNA sequence2.74E−051.12430050AA430993Hs. 227913APIS-like 16.41E−041.12425302U79115Hs. 155566CASP2 and RIPK1 domain containing adapto9.39E−051.12411988AA455459Hs. 164480ESTs, Weakly similar to T50609 hypotheti3.48E−051.12406657AI678644Hs. 277477major histocompatibility complex, class2.78E−051.12421940AA311445Hs. 9052Homo sapiens cDNA: FLJ22042 fis, clone H1.17E−051.12458812W57902Hs. 90744proteasome (prosome, macropain) 26S subu2.72E−061.12409008AA059392Hs. 66791ESTs2.07E−041.12410700AA352335Hs. 65641hypothetical protein FLJ 200734.95E−041.12458229AI929602Hs. 177phosphatidylinositol glycan, class H6.18E−031.12400886Target Exon4.47E−041.12422993AF154415Hs. 122843CASP8 associated protein 21.49E−031.12452501AB037791Hs. 29716hypothetical protein FLJ 109801.47E−031.12443202AW843882Hs. 19669ESTs, Weakly similar to T17346 hypotheti8.03E−041.12402474NM_004079: Homo sapiens cathepsin S (CTSS7.68E−071.12440993A1274880Hs146339ESTs6.87E−031.12400157Eos Control5.48E−051.12449209BE616830Hs. 294145ESTs5.38E−071.12446771AA128965Hs. 60679TATA box binding protein (TBP)-associate6.52E−071.12433533D53304Hs. 9028fusion, derived from t(12;16) malignant1.09E−041.12430799C19035Hs. 164259ESTs6.28E−041.12453870AW385001Hs. 8042Homo sapiens cDNA: FLJ23173 fis, clone L1.66E−031.12421748NM_014718Hs. 107809KIAA0726 gene product8.58E−051.11414181AK000476Hs. 75798hypothetical protein5.55E−061.11409327L41162Hs. 53563collagen, type IX, alpha 32.49E−051.11407804AF228603Hs. 39957pleckstrin 2 (mouse) homolog2.09E−031.11434821AA159111Hs. 284281Human putative ribosomal protein S1 mRNA2.44E−071.11411887AW182924Hs. 128790ESTs4.06E−031.11414515AA947457Hs. 135560ESTs, Weakly similar to T43458 hypotheti8.13E−031.11440706AA927562Hs. 148234ESTs2.22E−031.11424928AW753193Hs. 188361Homo sapiens cDNA FLJ12807 fis, clone NT1.01E−031.11410342R31350Hs. 743Fc fragment of IgE, high affinity I, rec7.13E−031.11449261AI637592ESTs5.50E−031.11448391H71025Hs. 21075GTF2I repeat domain-containing 14.49E−061.11419384AA490866Hs. 39429ESTs9.16E−041.11414256AW410035Hs. 75862MAD (mothers against decapentaplegic, Dr3.56E−041.11451652AA018968Hs. 133536ESTs2.21E−051.11430235BE268048Hs. 236494RAB10, member RAS oncogene family2.93E−061.11452694AK001736Hs. 30318hypothetical protein FLJ108749.45E−031.11444377AA134369Hs. 11042hypothetical protein5.02E−071.11420309AW043637Hs. 21766ESTs, Weakly similar to ALU5_HUMAN ALU S1.91E−041.11436845AA732297Hs. 113928ESTs2.01E−031.11443530BE563088Hs. 9552binder of Arl Two1.45E−041.11414618AI204600Hs. 96978hypothetical protein MGC107648.68E−041.11434636AA083764hypothetical protein MGC31784.36E−041.11422001AW891476Hs. 122764BRCA1 associated protein2.23E−031.11413186AU077141solute carrier family 16 (monocarboxylic2.27E−041.11423692BE621056Hs. 131731hypothetical protein FLJ110991.29E−031.11417890R79048gb: yi87gO2.r1 Soares placenta Nb2HP Homo3.79E−031.11453823AL137967gb: DKFZp761D2315_r1 761 (synonym: hamy2)8.96E−031.11431976AA719001Hs. 291065ESTs3.97E−061.11421183AL135740Hs. 102447TSC-22-like1.31E−041.11417382AI818489Hs. 139709hypothetical protein FLJ125726.22E−031.11436643AA757626Hs. 10941ESTs, Weakly similar to IPP1_HUMAN PROTE6.13E−061.11436763AI168278ESTs9.15E−031.11422426W79117Hs. 58559ESTs7.92E−031.11418018AW973655Hs. 286184hypothetical protein dJ551D2.58.85E−031.11425145BE242802Hs. 154797KIAA0090 protein4.53E−041.11435313AI769400Hs. 189729ESTs3.81E−031.11421305BE397354Hs. 324830diptheria toxin resistance protein requi5.71E−031.11427939T92459Hs. 16886ESTs1.26E−031.11433365AF026944Hs. 293797ESTs1.03E−041.11458524N63262Hs. 135965ESTs1.76E−031.11419590AFO05043Hs. 91390poly (ADP-ribose) glycohydrolase4.96E−061.11418224AL036057Hs. 83795interferon regulatory lactor 23.93E−051.10429272W25140Hs. 110667ESTs3.57E−031.10452586AW958479Hs. 289043spindlin9.58E−051.10438363AI886351Hs. 22353hypothetical protein FLJ219528.36E−061.10437042AK000702Hs. 5420hypothetical protein FLJ206953.05E−031.10457130NM_005651Hs. 183671tryptophan 2,3-dioxygenase9.64E−061.10456651AA302420Hs. 163622ESTs1.91E−031.10446002AI346468ESTs1.53E−041.10441389AF134838Hs. 7835endocytic receptor (macrophage mannose r3.16E−031.10442524H45879Hs. 37288nuclear receptor subfamily 1, group D, m1.56E−041.10437888AA373314Hs. 5897Homo sapiens mRNA; cDNA DKFZp586P1622 (f1.82E−081.10448822BE149845Hs. 289038hypothetical protein MGC41262.67E−041.10409835AW501362gb: UI-HF-BP0p-aiv-a-08-0-Ul.r1 NIH_MGC_52.67E−041.10420181AI380089Hs. 158951ESTs6.82E−041.10457650AA649162Hs. 236456ESTs3.31E−091.10409717AW452871Hs. 56043CGI-115 protein3.69E−031.10408831AF090114Hs. 48433endocrine regulator5.13E−051.10420131F08286Hs. 95262nuclear factor related to kappa B bindin2.43E−051.10427468AB036829Hs. 178347SKIP for skeletal muscle and kidney enri3.88E−041.10442990AA197226Hs. 19347hypothetical protein MGC113211.85E−041.10420867NM_014183Hs. 100002HSPC162 protein1.64E−081.10450401AW959281Hs. 8184ESTs4.53E−041.10453259R93125Hs. 124187ESTs4.73E−031.10448384R12314Hs. 21056Homo sapiens cDNA: FLJ21366 fis, clone C1.32E−041.10446141AW631255Hs. 324470L-3-hydroxyacyl-Coenzyme A dehydrogenase4.46E−041.10428746AW503820Hs. 192861Spi-B transcription factor (Spi-1/PU.1 r1.56E−031.10435523T62849Hs. 11090membrane-spanning 4-domains, subfamily A3.95E−061.10418816T29621Hs. 88778carbonyl reductase 12.36E−081.10450222U75308Hs. 24644TATA box binding protein (TBP)-associate3.72E−041.10408633AW963372Hs. 46677PRO2000 protein8.12E−041.10439898AW505514Hs. 209561KIAA1715 protein3.80E−041.10411111AW818127gb: CM1-ST0277-061299-059-b07 ST0277 Homo5.18E−041.10435010N89307Hs. 124696oxidoreductase UCPA2.08E−071.10434039L32977Hs. 3712ubiquinol-cytochrome c reductase, Rieske4.10E−041.10417094NM_006895Hs. 81182histamine N-methyltransferase4.50E−071.10408655AJ243950Hs. 46735deafness locus associated putative guani1.30E−041.10421968W22587Hs. 110095Homo sapiens mRNA; cDNA DKFZp761E0711(f3.52E−031.10427172AA398844Hs. 64595ESTs, Weakly similar to AF151831 1 CGI-72.07E−061.10426059BE292842Hs. 166120interferon regulatory factor 74.26E−061.10408047AW205461Hs. 243612ESTs5.99E−051.10446616R65964Hs. 334873ESTs, Weakly similar to ALU8_HUMAN ALU S1.80E−031.10423252AB005289Hs. 125856ATP-binding cassette, sub-family B (MDR/5.53E−031.09437869W91976Hs. 290834ESTs2.89E−051.09412577Z22968Hs. 74076CD163 antigen8.49E−061.09420664AI681270Hs. 99824BCE-1 protein1.33E−061.09432891AF161483Hs. 279761HSPC134 protein9.54E−031.09448346AW515030Hs. 258526ESTs1.07E−041.09408594BE144666gb: CM2-HT0176-041099-017-c02 HT0176 Homo4.37E−051.09437730AW071087Hs. 239176insulin-like growth factor 1 receptor3.49E−031.09414966BE544579Hs. 77690RAB5B, member RAS oncogene family8.08E−031.09422722H74219Hs. 269772ESTs1.24E−031.09446392AF142419Hs. 15020homolog of mouse quaking QKI (KH domain8.53E−051.09405064Target Exon4.07E−031.09453555N23574Hs. 123649ESTs, Moderately similar to ALU7_HUMAN A3.02E−061.09448928AI350260Hs. 301539mitochondrial ribosomal protein L342.32E−031.09421643BE281170Hs. 106357valosin-containing protein8.84E−061.09436749AA584890Hs. 5302leclin, galactoside-binding, soluble, 49.82E−041.09449223AB002348Hs. 23263KIAA0350 protein3.59E−051.09446927AW503484Hs. 16533myosin phosphatase, target subunit 11.36E−031.09439616BE018635Hs. 58582Homo sapiens cDNA FLJ12789 fis, clone NT4.53E−061.09433361AW469373ribosomal protein L396.62E−031.09410781AI375672Hs. 165028ESTs4.93E−051.09421535AB002359Hs. 105478phosphoribosylformylglycinamidine syntha6.66E−041.09442079AW183787ESTs2.49E−031.09443274BE540891protein kinase, cAMP-dependent, regulato3.02E−041.09437070AA765471Hs. 154494ESTs, Weakly similar to 2109260A B cell4.49E−031.09424690BE538356Hs. 151777eukaryotic translation initiation factor1.30E−051.09418510R94322Hs. 271642ESTs, Weakly similar to I38022 hypotheti2.87E−031.09422773AB028962Hs. 301552KIAA1039 protein1.54E−031.09436907AA737171Hs. 131809ESTs1.38E−051.09420087AI653368Hs. 81889ESTs2.56E−031.09426407BE272112Hs. 48563ESTs, Moderately similar to ALU2_HUMAN A3.11E−041.09425917W28517Hs. 117167Homo sapiens cONA: FLJ23067 fis, clone L5.77E−081.09417973NM_004490Hs. 83070growth factor receptor-bound protein 142.92E−031.09444026AA205759Hs. 10119hypothetical protein FLJ149571.40E−061.09413840AI301558RNA binding motif protein, X chromosome1.30E−041.09451612AI928962Hs. 26761DKFZP586L0724 protein3.91E−051.09414839X63692Hs. 77462DNA (cytosine-5-)-methyltransferase 11.24E−031.09438827AI288188Hs. 32124ESTs, Moderately similar to ALU1 _HUMAN A9.62E−061.09438897R52285Hs. 289018Homo sapiens cDNA: FLJ22918 fis, clone K2.03E−031.08427547BE047653Hs. 119183ESTs, Weakly similar to ZN91_HUMAN ZINC4.93E−041.08439205AF087990Hs. 42758Homo sapiens, clone IMAGE: 3354845, mRNA,4.77E−031.08427095AA316080Hs. 173554ubiquinol-cytochrome c reductase core pr4.13E−061.08425154NM_001851Hs. 154850collagen, type IX, alpha 11.08E−031.08426466BE619053Hs. 170001eukaryotic translation initiation factor2.34E−041.08413580T64632Hs. 202974ESTs, Weakly similar to B57785 zinc fing1.99E−031.08443084AI827639Hs. 125539ESTs1.18E−031.08434724AA644555Hs. 136568ESTs3.11E−031.08429292AW161453Hs. 198767COP9 (constitutive photomorphogenic, Ara2.29E−091.08423120AW160551Hs. 124021soggy-1 gene1.53E−031.08433350BE563152Hs. 10362Homo sapiens cDNA: FLJ20944 fis, clone A1.35E−061.08421759AA027968Hs. 107979small membrane protein 14.31E−051.08434645AF255303Hs. 112227membrane-associated nucleic acid binding1.47E−081.08435632AF220049Hs. 43549uncharacterized hematopoietic stem/proge3.86E−041.08410196AI936442Hs. 59838hypothetical protein FLJ108083.40E−051.08430010AI434760Hs. 279949KIAA1007 protein2.32E−031.08402007C18000503: gi|8922165|ref|NP_060080.1| h3.30E−031.08423303AW593818Hs. 186421ESTs6.72E−031.08445529H14421Hs. 180513ATP-binding cassette, sub-family A (ABC12.31E−041.08414038BE242722Hs. 180040hypothetical protein FLJ224393.84E−051.08456640AW207000Hs. 126857Homo sapiens cDNA FLJ12936 fis, clone NT2.91E−071.08450649NM_001429Hs. 25272E1A binding protein p3003.10E−031.08422461NM_003417Hs. 117077zinc finger protein 2644.28E−041.08411850AK002033Hs. 72782hypothetical protein FLJ111716.36E−041.08433847AA610266Hs. 3631ESTs5.50E−041.08431049AA846576Hs. 103267hypothetical protein FLJ22548 similar to1.17E−051.08400967Target Exon2.95E−031.08415987R41275Hs. 346886gb: yf85c07.s1 Soares infant brain 1NIB H2.19E−041.08414427L19711Hs. 76111dystroglycan 1 (dystrophin-associated gl5.18E−071.08416039AA376989Hs. 78989alcohol dehydrogenase 5 (class III), chi2.67E−051.08438951U51336Hs. 6453inositol 1,3,4-triphosphate 5/6 kinase7.07E−041.08427979BE379776Hs. 181309proteasome (prosome, macropain) subunit.1.02E−051.08419852AW503756Hs. 286184hypothetical protein dJ551D2.58.58E−061.08456115F01082Hs. 172004titin3.41E−031.08416396R91986Hs. 209508ESTs, Moderately similar to ALU1_HUMAN A7.17E−051.08419080AW150835Hs. 18878hypothetical protein FLJ216203.78E−051.08421013M62397Hs. 1345mutated in colorectal cancers9.61E−041.08425465L18964Hs. 1904protein kinase C, iota1.12E−041.08433198AA992841HS27263KIAA1458 protein4.26E−031.08456792BE502835Hs. 15463Homo sapiens, clone IMAGE: 2959994, mRNA2.30E−051.08424904AI221739Hs. 96899ESTs2.08E−031.08439655AI925740Hs. 91559ESTs, Weakly similar to S72576 hypotheti2.14E−031.08409026AL137554Hs. 49927protein kinase NYD-SP159.99E−051.08430715AC004908Homo sapiens PAC clone RP5-855D212.72E−061.08456647AI252640Hs. 110364peptidylprolyl isomerase C (cyclophilin4.65E−061.08429261AW176254Hs. 342389ESTs3.21E−031.08451813NM_16117Hs. 27182phospholipase A2-activating protein7.17E−051.07438117AA328041Hs. 194329hypothetical protein FLJ211746.88E−071.07451326AW296946Hs. 256078ESTs5.35E−051.07425116AU076686Hs. 154668KIAA0391 gene product1.18E−031.07451938AI354355Hs. 16697down-regulator of transcription 1, TBP-b1.61E−061.07450234AI688524ESTs2.54E−041.07411739AW859623Hs. 8262lysosomal-associated membrane protein 21.96E−031.07445372N36417Hs. 144928ESTs1.34E−031.07421522R48881Hs. 102991hypothetical protein FLJ139569.67E−031.07419426AI214690Hs. 346257aldo-keto reductase family 1, member B12.34E−051.07459126AA478866Hs. 288809hypothetical protein FLJ201592.40E−041.07417395BE564245Hs. 82084integrin beta 3 binding protein (beta3-e9.69E−031.07445133AW157646Hs. 198689ESTs3.39E−031.07417688R09170Hs. 284350ESTs1.12E−051.07432858BE618609Hs. 279591Homo sapiens clone 25056 mRNA sequence3.83E−051.07439363AW979183Hs. 292414ESTs, Weakly similar to I38022 hypotheti8.83E−031.07452260AA453208Hs. 330994RAB9, member RAS oncogene family4.08E−051.07449838AB020653Hs. 24024KIAA0846 protein9.84E−041.07451900AB023199Hs. 27207KIAA0982 protein8.47E−071.07450014N41322Hs. 18441ESTs2.19E−061.07414257AI828600Hs. 21124ESTs, Weakly similar to ALU8_HUMAN ALU S8.09E−051.07424906AI566086Hs. 153716Homo sapiens mRNA for Hmob33 protein, 3′5.69E−041.07404497Target Exon5.11E−041.07448598NM_005701Hs. 21577RNA, U transporter 14.71E−071.07423767H18283Hs. 132753F-box only protein 23.06E−041.07454514AW802838gb: IL2-UM0076-130500-084-B12 UM0076 Homo5.61E−041.07441356BE384361Hs. 182885ESTs, Weakly similar to JC5024 UDP-galac6.59E−061.07426378U80082Hs. 169600KIAA0826 protein4.00E−041.07428420AL096858Hs. 184245KIAA0929 protein Msx2 interacting nuclea8.62E−091.07453827AF201948Hs. 35660BUP protein5.87E−071.07454462AW754153Hs. 155976cullin 4B5.88E−031.07427120R42099Hs. 21965ESTs3.67E−041.07427297AW292593Hs. 334907Homo sapiens, clone MGC: 17333, mRNA, com3.42E−061.07408876AI961060Hs. 129908KIAA0591 protein4.75E−041.07445929AI089660Hs. 323401dpy-30-like protein1.14E−051.07457913AA748613Hs. 311977ESTs, Highly similar to SWI/SNF related,4.55E−031.07409278AA346683Hs. 52763anaphase-promoting complex subunit 71.06E−031.07430939AI269471Hs. 187018ESTs5.61E−031.07450943AA020964Hs. 24734oxysterol binding protein6.29E−031.07449893T97999Hs. 18214ESTs, Weakly similar to B34087 hypotheti1.03E−031.07428821H91282Hs. 286232Homo sapiens cDNA: FLJ23190 fis, clone L4.16E−031.07449540AA001713gb: zh86e08.s1 Soares_fetal_liver_spleen1.69E−031.07447060H79103Hs. 270997ESTs, Weakly similar to S47072 finger pr9.50E−051.07404692Target Exon4.70E−041.07421307BE539976Hs. 103305Homo sapiens mRNA; cDNA DKFZp434B0425 (f1.04E−041.07440523AW501153Hs. 7243ubiquitin specific protease 248.40E−071.07418627AL079835Hs. 86858ribosomal protein S6 kinase, 70 kD, polyp2.28E−051.07439427AA938150Hs. 190534ESTs4.17E−041.07451923BE019040Hs. 27258calcyclin binding protein3.75E−051.07405166Target Exon1.21E−031.06434825N87549Hs. 125287zinc finger protein ZNF140-like protein3.48E−061.06425395NM_014102Hs. 156243PRO1848 protein1.37E−051.06422008AJ000534Hs. 110708sarcoglycan, epsilon1.10E−051.06407656AW747986Hs. 37443Homo sapiens mRNA; cDNA DKFZp434B2119 (f1.28E−051.06433935AF112208Hs. 4416313 kDa differentiation-associated protein8.27E−071.06446045AV656268Hs. 209153angiopoietin-like 37.72E−051.06444156AW500059ESTs, Highly similar to AF219140 1 gastr1.00E−041.06407621AA128805Hs. 6815Homo sapiens, clone IMAGE: 3626458, mRNA,8.90E−071.06409506NM_006153Hs. 54589NCK adaptor protein 16.83E−031.06458287AA987556Hs. 12867ESTs1.25E−031.06454552AW806924gb: QV4-ST0023-160400-172-h10 ST0023 Homo5.69E−031.06408931AA251995Hs. 334648poly(A) polymerase alpha5.04E−031.06417414AA434589dUTP pyrophosphatase1.69E−041.06405270NM_018850*: Homo sapiens ATP-binding cass5.68E−031.06421544AK001445Hs. 105633hypothetical protein FLJ105837.06E−041.06449881Z28444Hs. 24119Homo sapiens mRNA; cDNA DKFZp586G2222 (f1.68E−041.06450295AI766732Hs. 210628ESTs2.38E−031.06413530AA130158Hs. 19977ESTs, Moderately similar to ALU8_HUMAN A9.93E−041.06422622AW753452Hs. 118757enhancer of rudimentary (Drosophila) horn6.78E−041.06410602AI370306Hs. 158622ESTs4.91E−041.06453959Z18859guanine nucleotide binding protein (G pr4.95E−041.06436503AJ277750Hs. 183924ubiquitin associated and SH3 domain cont9.83E−041.06424459R56570Hs. 50547ESTs1.03E−031.06433230AW136134Hs. 220277ESTs1.55E−051.06453436AW504292Hs. 193261ESTs1.05E−041.06459097AW062839Hs. 154230nuclear domain 10 protein5.24E−031.06426934AI301623Hs. 172918hypothetical protein1.56E−051.06449240AF107455Hs. 334540Homo sapiens, clone IMAGE: 4138787, mRNA,3.35E−031.06439195H89360gb: yw28d08.s1 Morton Fetal Cochlea Homo2.58E−031.06440367BE091101Hs. 188606ESTs1.63E−051.06431689AA305688Hs. 267695UDP-Gal: betaGlcNAc beta 1,3-galactosyltr8.24E−031.06409598NM_014018Hs. 55097mitochondrial ribosomal protein S281.16E−061.06402109Target Exon547E−031.06437207T27503Hs. 15929hypothetical protein FLJ129108.55E−051.06430607AW973521Hs. 247324mitochondrial ribosomal protein S145.97E−041.06420893AK001326Hs. 100090tetraspan 31.73E−061.06422868AA425589Hs. 121076peptidylprolyl isomerase (cyclophilin)-l1.42E−051.06418977AA233094Hs. 191517ESTs2.97E−031.06411388X72925Hs. 69752desmocollin 11.80E−031.06440417AW298070Hs. 278675ESTs1.24E−041.06448780W92071Hs. 22033Human DNA sequence from clone 366N23 on6.62E−061.06452405AW451241Hs. 225641hypothetical protein FLJ131714.88E−071.06439259BE464643Hs. 242322ESTs1.85E−031.05423652AF052122Hs. 130712Homo sapiens clone 23929 mRNA sequence1.77E−031.05409939AA463437Hs. 11556Homo sapiens cDNA FLJ12566 fis, clone NT9.73E−061.05403363Target Exon6.72E−031.05406023Target Exon5.18E−041.05416363T78325Hs. 81001F-box only protein 256.64E−031.05441736AW292779Hs. 8182ESTs2.58E−031.05403185Target Exon5.61E−041.05432538BE258332Hs. 278362male-enhanced antigen9.50E−041.05447042AB035863Hs. 182217succinate-CoA ligase, ADP-forming, beta1.08E−061.05450631AW139773Hs. 246827ESTs8.76E−031.05453195BE241876Hs. 32352hypothetical protein DKFZp434K12101.16E−041.05407596R86913Hs. 107622gb: yq30f05.r1 Soares fetal liver spleen2.86E−031.05431752AW337166Hs. 43018ESTs4.94E−041.05445637W58459Hs. 8949hypothetical protein MGC41724.47E−051.05424285BE207168Hs. 144630nuclear receptor subfamily 2, group F, m2.95E−041.05408395BE072425Hs. 44579hypothetical protein FLJ201998.66E−051.05420825AI656727Hs. 194657gb: tt53f12.x1 NCI_CGAP_GC6 Homo sapiens1.85E−051.05414291AI289619Hs. 13040G protein-coupled receptor 862.40E−061.05406922S70284Hs. 119597gb: stearoyl-CoA desaturase [human, adipo2.97E−041.05438805AA826048Hs. 117887ESTs8.57E−041.05400223Eos Control1.09E−041.05432332AA305351Hs. 274369uncharacterized hypothalamus protein HAR2.30E−031.05413628L42542Hs. 75447ralA binding protein 11.23E−071.05454067AA041455ESTs2.09E−041.05442965AL134235Hs. 222442ESTs8.21E−031.05422174AL049325Hs. 112493Homo sapiens mRNA; cDNA DKFZp564D036 (fr1.08E−031.05431799AK000283Hs. 270502hypothetical protein FLJ202761.53E−031.05413004T35901Hs. 75117interleukin enhancer binding factor 2, 41.60E−031.05442092AW578669hypothetical protein FLJ124396.77E−041.05424201L33075Hs. 1742IQ motif containing GTPase activating pr2.54E−041.05415673BE242249Hs. 78592eukaryotic translation initiation factor4.67E−051.05424909S78187Hs. 153752cell division cycle 25B3.66E−051.05432467T03667Hs. 239388Human DNA sequence from clone RP1-304B143.85E−031.05429623NM_005308Hs. 211569G protein-coupled receptor kinase 56.02E−031.05403611NM_017886*: Homo sapiens hypothetical pro4.13E−041.05449517AW500106Hs. 23643serine/threonine protein kinase MASK8.52E−051.05422480AB029016Hs. 117333Homo sapiens mRNA for KIAA1093 protein,8.52E−031.05440719AA150869Hs. 26267ATP-dependant interferon response protei6.72E−031.05420520AK001978Hs. 98510similar to rab11-binding protein1.06E−041.05409439AW390511Hs. 288862Homo sapiens cDNA: FLJ21260 fis, clone C2.58E−031.05430504H52761Homo sapiens, clone MGC: 12617, mRNA, com9.26E−051.05429750AB007916Hs. 214646KIAA0447 gene product3.20E−051.05438887R68857Hs. 265499ESTs5.09E−041.05447726AL137638Hs. 19368matrilin 22.15E−031.05448859BE272446Hs. 265317hypothetical protein MGC25628.34E−041.05409132AJ224538Hs. 50732protein kinase, AMP-activated, beta 2 no9.27E−091.04446838AW978336Hs. 20999nucleolar protein p40; homolog of yeast6.42E−051.04426441AA297257Hs. 169907glutathione S-transferase A44.55E−051.04458096AF052138Hs. 6580Homo sapiens cDNA: FLJ23227 fis, clone C6.20E−041.04406731AI559131gb: tq31g07.x1 NCI_CGAP_Ut1 Homo sapiens3.80E−041.04403707Target Exon9.16E−031.04451572AA018556Hs. 268691ESTs, Moderately similar to ALU2_HUMAN A2.08E−041.04434959AW974949Hs. 186564ESTs, Weakly similar to I38022 hypotheti8.06E−031.04439802R06364Hs. 18001ESTs1.02E−071.04457447X78261H. sapiens mRNA for TRE17 5′ extremity an1.60E−031.04425866BE270097Hs. 159971SWI/SNF related, matrix associated, acti2.57E−031.04416065BE267931Hs. 78996proliferating cell nuclear antigen1.96E−071.04426506AW935187Hs. 170162KIAA1357 protein7.93E−061.04424088AL049942Hs. 139240DKFZP564F1422 protein2.35E−041.04438374AA321866Hs. 6193hypothetical protein FLJ145904.88E−031.04455833BE145360Hs. 190064ESTs, Weakly similar to I38022 hypotheti1.77E−031.04407874AI766311Hs. 289047Homo sapiens cDNA FLJ14059 fis, clone HE1.27E−081.04432656NM_000246Hs. 3076MHC class II transactivator1.71E−031.04413781J05272Hs. 850IMP (inosine monophosphate) dehydrogenas6.46E−031.04449865AW204272Hs. 199371ESTs1.78E−081.04452420BE564871Hs. 29463centrin, EF-hand protein, 3 (CDC31 yeast1.33E−061.04423314AI400661Hs. 127811disintegrin metalloproteinase with throm1.34E−031.04443303U67319Hs. 9216caspase 7, apoptosis-related cysteine pr1.41E−061.04456175BE241702Hs. 79402polymerase (RNA) II (DNA directed) polyp8.45E−031.04420179N74530Hs. 21168ESTs7.87E−041.04410209AI583661Hs. 60548hypothetical protein PRO16355.97E−041.04434148AW291716Hs. 116113Homo sapiens cDNA FLJ14182 fis, clone NT1.60E−031.04459274AA382590Hs. 46366KIAA0948 protein1.05E−061.04450848AI677994Hs. 428fms-related tyrosine kinase 3 ligand5.70E−041.04411580AL080088Hs. 70877DKFZP564K2062 protein3.19E−061.04436523BE612990Hs. 5212single-strand selective monofunctional u3.67E−031.04428137AA421792Hs. 170999ESTs8.38E−041.04426494AL119528Hs. 170098KIAA0372 gene product1.22E−031.04434805AW974666Hs. 293024ESTs3.83E−031.04455679BE066529gb: RC3-BT0333-300300-017-a12 BT0333 Homo5.56E−041.04437739AW579216Hs. 264610ESTs, Moderately similar to Ibd1 [H. sapi3.46E−051.04412672AA158910Hs. 74441chromodomain helicase DNA binding protei2.77E−031.04447749T53260Hs. 191091ESTs4.48E−051.04452461N78223Hs. 108106transcription factor7.56E−041.04447915AW450650Hs. 20013GCIP-interacting protein p291.82E−051.04447030AW444659Hs. 232184ESTs9.89E−031.04430919AA489041Hs. 295448ESTs1.01E−031.04406684X16354Hs. 50964carcinoembryonic antigen-related cell ad4.34E−041.03433882U90441Hs. 3622procollagen-proline, 2-oxoglutarate 4-di2.44E−041.03430534AA480908gb: aa28f09.s1 NCI_CGAP_GCB1 Homo sapiens3.51E−031.03413010AA393273Hs. 75133transcription factor 6-like 1 (mitochond1.08E−051.03409490AA075064gb: zm85e12.s1 Stratagene ovarian cancer2.11E−031.03422231AA443512Hs. 101383ESTs3.11E−041.03425376H10612gb: ym08f03.r1 Soares infant brain 1NIB H2.49E−031.03434733AI334367Hs. 159337ESTs1.56E−041.03425973BE379570Hs. 165439arsA (bacterial) arsenite transporter, A1.41E−031.03458477NM_000314Hs. 10712phosphatase and tensin homolog (mutated2.73E−041.03440708AF038962Hs. 7381voltage−dependent anion channel 31.07E−041.03412338AA151527Hs. 69485hypothetical protein FLJ124361.38E−051.03424277AA338057Hs. 29131nuclear receptor coactivator 21.94E−031.03427625AF008216Hs. 285013putative human HLA class II associated p2.54E−031.03410017AW952426Hs. 109438Homo sapiens clone 24775 mRNA sequence6.00E−061.03404124Target Exon6.53E−041.03446895AA166655Hs. 26860ESTs8.18E−051.03448848AF131851Hs. 22241hypothetical protein1.70E−031.03403292Target Exon4.58E−031.03425728T84535Hs. 303001Homo sapiens cDNA: FLJ21335 fis, clone C3.27E−031.03437440AA846804ESTs1.45E−031.03433486AW976937Hs. 54452ESTs, Weakly similar to T00329 hypotheti7.37E−061.03445790AV655170Hs. 49015chromosome 21 open reading frame 354.70E−031.03424139D86979Hs. 141296KIAA0226 gene product1.13E−051.03451658AW195351Hs. 250520ESTs, Moderately similar to I38022 hypot7.97E−061.03458409AV645567Hs. 120391ESTs7.85E−041.03425210AA054679Hs. 155150ribonuclease P (14 kD)1.78E−031.03429762AI346255Hs. 216354ring finger protein 55.43E−061.03449578AL050331Hs. 284141KIAA0721 protein5.02E−061.03440244AI743977Hs. 205144ESTs5.07E−041.03453784AA456246Hs. 271541Homo sapiens cDNA FLJ11653 fis, clone HE3.05E−041.03453327AW500180tryptophanyl-tRNA synthetase1.81E−051.03422298NM_005683Hs. 114545G protein-coupled receptor 551.63E−041.03428384M54968v-Ki-ras2 Kirsten rat sarcoma 2 viral on7.06E−041.03447982H22953Hs. 137551ESTs1.77E−051.03436911AA142984Hs. 5344adaptor-related protein complex 1, gamma1.96E−031.03421873AI132988Hs. 109052chromosome 14 open reading frame 22.16E−051.03432221M21191Hs. 273415aldolase A, fructose-bisphosphate4.65E−031.03403027C21000364*: gi|8394509|ref|NP_058778.1|u2.37E−041.03449845AW971183Hs. 6019DnaJ (Hsp40) homolog, subfamily C, membe1.48E−051.03447221AB007861Hs. 17803KIAA0401 protein1.88E−051.03419725U66048Hs. 92683Homo sapiens clone 161455 breast express1.11E−051.03456863T16837Hs. 4241ESTs1.83E−051.03430599NM_004855Hs. 247118phosphatidylinositol glycan, class B1.54E−041.03426295AW367283zinc finger protein 6 (CMPX1)1.72E−061.03414312AA155694Hs. 191060ESTs1.81E−041.03428484AF104032Hs. 184601solute carrier family 7 (cationic amino9.02E−081.03452019AL157503Hs. 27552Homo sapiens mRNA; cDNA DKFZp586N2424 (f6.94E−041.02445896W37944Hs. 4007Sarcolemmal-associated protein8.01E−041.02452606N45202Hs. 90012hypothetical protein FLJ234419.66E−041.02438940AF075045Hs. 271609ESTs5.84E−041.02436685W28661Hs. 5288Homo sapiens mRNA; cDNA DKFZp434M245 (fr1.76E−051.02407233X16354Hs. 50964carcinoembryonic antigen-related cell ad6.24E−041.02432021AA524470Hs. 58753ESTs1.30E−041.02444239R57988Hs. 10706epithelial protein lost in neoplasm beta2.69E−031.02444461R53734Hs. 25978ESTs, Weakly similar to 2109260A B cell4.54E−031.02439467AW292275Hs. 158365ESTs4.93E−031.02417713D42047Hs. 82432KIAA0089 protein7.09E−041.02443968AA287702Hs. 10031KIAA0955 protein2.40E−031.02411400AA311919Hs. 69851nucleolar protein family A, member 1 (H/1.09E−051.02406535Target Exon2.33E−051.02426007AA724983Hs. 144743ESTs, Weakly similar to AD08_HUMAN ADAM4.26E−041.02408103AA992592Hs. 42712MAX protein1.83E−081.02436024AI800041ESTs1.16E−051.02448393AW117691Hs. 224517ESTs, Moderately similar to hypothetical5.08E−041.02410277R88621Hs. 26249ESTs, Weakly similar to T2D3_HUMAN TRANS2.62E−031.02443985BE613332Hs. 132055ESTs, Weakly similar to GNMSLL retroviru5.17E−031.02420168AF217508Hs. 95594serine carboxypeptidase vitellogenic-lik7.46E−061.02458649AI291047Hs. 49053ESTs1.64E−031.02439462AL133026Hs. 6567Homo sapiens mRNA; cDNA DKFZp434C136 (fr1.26E−041.02439871R88518Hs. 46736hypothetical protein FLJ234765.31E−031.02443724AA446783Hs. 288932hypothetical protein FLJ131941.35E−031.02408627BE313882Hs. 46659DKFZP58612223 protein3.10E−031.02443291AA325633Hs. 136102KIAA0853 protein4.07E−041.02441243AI767056Hs. 193002ESTs1.55E−031.02419881AA329340mannosyl (alpha-1,3-)-glycoprotein beta-3.38E−051.02438081H49546Hs. 251391claudin 163.84E−031.02423456AL110151Hs. 128797DKFZP586D0824 protein3.80E−061.02422090W05345Hs. 293884ESTs1.52E−051.02433920NM_000430Hs77318platelet-activating factor acetylhydrola2.37E−041.02411142NM_014256Hs. 69009transmembrane protein 37.98E−041.02437119AI379921Hs. 177043ESTs5.38E−041.02414022W44916myosin regulatory light chain 2, smooth2.93E−031.02415524F11541gb: HSC2YD011 normalized infant brain cDN5.94E−031.02442119AW970826Hs. 6185KIAA1557 protein2.43E−031.02440865AI281525Hs. 130180ESTs2.56E−031.02449227AJ403106Hs. 121824ESTs3.98E−031.02426224BE085860Hs. 168075karyopherin (importin) beta 29.60E−071.02435272AA906415Hs. 110041ESTs2.06E−031.02449269AI564682Hs. 175870ESTs3.26E−051.02438685AA814034Hs. 123581ESTs1.79E−031.02422558NM_006420Hs. 118249brefeldin A-inhibited guanine nucleotide5.07E−051.02441244BE612935Hs. 184052PP1201 protein1.09E−041.02420473AL118782Hs. 300208Sec23-interacting protein p1252.28E−031.02445504NM_006590Hs. 12820SnRNP assembly defective 1 homolog4.35E−031.02437952D63209Hs. 5944solute carrier family 11 (proton-coupled7.25E−091.02431109AA492271Hs. 143672ESTs3.55E−051.02418535R98238Hs. 268874ESTs, Weakly similar to ZN91_HUMAN ZINC2.05E−031.02425245AI751768Hs. 155314KIAA0095 gene product1.68E−051.02445903AI347487Hs. 132781class I cytokine receptor4.56E−041.02445558R99105Hs. 173522ESTs3.62E−031.01410625AI753267Hs. 15220zinc finger protein 1065.62E−031.01409162H25530Hs. 50868solute carrier family 22 (organic cation1.30E−041.01411990AW963624Hs. 31707ESTs, Weakly similar to YEW4_YEAST HYPOT2.38E−041.01419497NM_006410Hs. 90753Tat-interacting protein (30 kD)9.78E−051.01428974AA442693Hs. 272006ESTs, Weakly similar to I38022 hypotheti3.99E−071.01435014BE560898Hs. 10026mitochondrial ribosomal protein L173.50E−031.01430268AK000737Hs. 237480hypothetical protein FLJ207301.21E−051.01408340AB037762Hs. 44268myelin gene expression factor 22.84E−061.01410576AI421612Hs. 30864ESTs3.10E−031.01444187AW138466Hs. 151274ESTs1.63E−031.01430487D87742Hs. 241552KIAA0268 protein1.29E−051.01431214AA294921Hs. 348024v-ral simian leukemia viral oncogene hom4.89E−041.01428592AA479487Hs. 105642Homo sapiens cDNA: FLJ23271 fis, clone H1.27E−041.01412938AU077050Hs. 75066translin3.21E−061.01414355BE272157Hs. 75925proteasome (prosome, macropain) inhibito4.98E−051.01424026AI798295Hs. 137576ribosomal protein L34 pseudogene 12.24E−041.01432975AA331517Hs. 286055chimerin (chimaerin) 25.03E−031.01419170BE002798Hs. 287850integral membrane protein 13.08E−041.01459428AA258989ESTs5.76E−031.01451579AW607731Hs. 26670Human PAC clone RP3-515N1 from 22q11.2-q4.45E−061.01408128N72794Hs. 37716ESTs, Weakly similar to ataxin-2-like pr1.94E−031.01412634U55984heat shock 90 kD protein 1, alpha9.53E−051.01425620AA447450Hs. 124219hypothetical protein FLJ129343.30E−031.01421829AB018330Hs. 108708calcium/calmodulin-dependent protein kin4.76E−051.01434552AA639618Hs. 325116Homo sapiens, clone MGC: 2962, mRNA, comp3.66E−031.01426348BE466586Hs. 17433hypothetical protein FLJ209671.18E−041.01458984AA011185Hs. 221189hypothetical protein FLJ144313.93E−041.01420112NM_005109Hs. 95220oxidative-stress responsive 14.32E−031.01437142AI791617Hs. 145068ESTs, Moderately similar to A46010 X-lin2.45E−041.01410913AL050367Hs. 66762Homo sapiens mRNA; cDNA DKFZp564A026 (fr6.41E−051.01422749W01076Hs. 278573CD59 antigen p18-20 (antigen identified7.76E−031.01456926AB018284Hs. 158688KIAA0741 gene product5.40E−061.01444745AF117754Hs. 11861thyroid hormone receptor-associated prot8.02E−051.01416721H80001gb: ys65d09.r1 Soares retina N2b4HR Homo4.32E−051.01425218NM_014909Hs. 155182KIAA1036 protein4.15E−031.01415724NM_003580Hs. 78687neutral sphingomyelinase (N-SMase) activ3.02E−061.01419013T90378Hs. 14463ESTs2.26E−031.01440461R52728Hs. 7193KIAA1183 protein4.24E−041.01445760AW370515Hs. 13273KIAA0592 protein9.19E−071.01422732AA577455Hs. 24937transformer-2 alpha (htra-2 alpha)3.04E−041.01453528AL137459Hs. 33104Huntingtin interacting protein C5.40E−051.01454900AW838129gb: QV2-LT0051-240300-097-g12 LT0051 Homo7.63E−031.01421395D90084Hs. 1023pyruvate dehydrogenase (lipoamide) alpha3.22E−041.01414662AL036058Hs. 76807major histocompatibility complex, class6.04E−041.01433505AW504027Hs. 15301Homo sapiens cDNA FLJ12596 fis, clone NT2.97E−051.01431712R26584Hs. 267993hypothetical protein FLJ101432.30E−051.01432145AB040890Hs. 272759KIAA1457 protein1.58E−031.01432878BE386490Hs. 279663Pirin3.32E−061.01412025AI827451Hs. 24143Wiskott-Aldrich syndrome protein interac8.61E−061.00408988AL119844Hs. 49476Homo sapiens clone TUA8 Cri-du-chat regi5.19E−041.00430408AA478540Hs. 108336ESTs, Weakly similar to ALUE_HUMAN !!!!1.07E−051.00419021AI908330Hs. 10554hypothetical protein FLJ127612.11E−071.00447188H65423Hs. 17631hypothetical protein DKFZp434E21356.76E−041.00409065AB033113Hs. 50187KIAA1287 protein1.25E−041.00410868T06529Hs. 98518Homo sapiens cDNA FLJ11490 fis, clone HE5.88E−041.00442462AF031405gb: AF031405 Soares fetal liver spleen 1N1.37E−031.00434665AA642125gb: nr60c01.s1 NCI_CGAP_Lym3 Homo sapiens8.06E−031.00435869AF255910Hs. 54650junctional adhesion molecule 28.84E−041.00405922Target Exon2.64E−031.00400239NM_001610: Homo sapiens acid phosphatase2.26E−041.00419632AK000155Hs. 91684Homo sapiens mRNA; cDNA DKFZp667I103 (fr5.91E−031.00431857W19144Hs. 271742ADP-ribosyltransferase (NAD; poly (ADP-r8.59E−061.00438543AA810141Hs. 192182ESTs2.40E−061.00458430AV646505Hs. 122155ESTs6.08E−031.00445106T10219Hs. 12329KIAA0697 protein2.01E−041.00422926NM_016102Hs. 121748ring finger protein 163.85E−031.00443956Z45647Hs. 107968ESTs3.22E−031.00453128AW026516Hs. 31791acylphosphatase 2, muscle type2.24E−041.00431195AA503083Hs. 79742ESTs, Weakly similar to T29959 DNA-direc1.99E−031.00447348AI270615Hs. 18192Ser/Arg-related nuclear matrix protein (2.85E−041.00455148AW858403gb: CM0-CT0341-181299-130-f04 CT0341 Homo4.78E−031.00434775AA648983ESTs2.20E−051.00433456AA593447Hs. 124296ESTs1.75E−031.00410800BE280421Hs. 94499ESTs5.76E−051.00447370AW248150Hs. 18349mitochondrial ribosomal protein L151.29E−051.00406238Target Exon1.03E−031.00Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: T-test p-value R2: Difference of the average standardized value of Hep C+ Liver vs. the average standardized value of Hep C− Liver


[0366]

31







TABLE 11B









CAT



Pkey
Number
Accession







414404
19538_5
BG036308 AW813969 AW579686 BE147476 AW813871 BE147474 BE147589 BE147582 AA767716 AW813960 AW813958




BE147583




AW813608 AW813612 AW813965 AW813954 BE706154 BF843546 AW813870 BE147801 AW813962 R80512 BG681408




AA344564 AW370224




BG614838 AW582118 AW582114 AW370227 W16712 BF209670 BG117739 BE762802 BE087964 BE888647 R89145




BF342601 BI752591




BG435038 AA166732 N79515 BF541709 N79567 BG503029


455705
77478_2
BF971018 BE513812 AA133359 AW581719 BF434402 AL600619 BG699731 BI551395 AW027136 AW055130 BF939512




AI076048 H18584




AW161061 AA864334 AI816101 BE049456 AW044012 AA954079 AI274682 AI370526 AW131990 AA853195 AA853191




BG118295 AA761620




BG705371 BF355591 BF336596 AA360497 H28072 BG198352 AW364709 H40926 H44214 AA836538 BI059563


437938
66997_1
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AI792814


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35068_1
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12330_1
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60316_2
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450932_1
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122184_1
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2855992_1
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11847_4
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137089_2
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1269988_2
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138046_1
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2681178_1
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2338_5
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2142268_1
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2780939_1
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1155535_1
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55043_1
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117643_1
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1988165_1
W05023 N59520 H80405


400120
133_1
BC014030 NM_004068 BC004996 AK057883 D63475 BM468205 BG386792 BG750447 BG575842 BG479084




BG741027 AU118129 BE901043




AU141281 BG825395 BG338276 BE396231 AU121493 AU131489 BF341132 BG335659 BI769251 AU142779 AU124483




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480035_1
BG113822 AW812262 AW812259 AW812255


438021
45849_1
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1073598_1
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1767112_1
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41648_2
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12109_1
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2208777_1
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3146528_1
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441458
306062_1
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64950_1
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3806_1
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MH337_5
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435882
136881_1
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10568_3
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8558_4
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0_0
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5773_1
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451436
5742_10
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60627_2
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417628
2137209_1
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118540_1
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455_7
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428104
1376802_1
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430933
605836_1
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421297
16064_1
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AI343373 AW236167 BE568091 BF747959 BF241262 BE940663 AI435278 R05794 AW027091 AI860259 AI268890




T94871 AW182884 N67183




AW149083 H42473 AI678254 R26706 AI419684 R24905 AW388568 AW363261 N31299 H63489 AW195475 AA452592




BE844216 T91205




H64955 BF858811 AW962779 AW388295 BF857615 BF856552 BF856548 BF857611 AW866752


430715
32242_1
AI148194


450234
707416_1
AI797978 AI688524 AW270069


454514
1058176_1
AW802838 BE170861


449540
79180_1
AA001803 H63836 AA001713 H63784


444156
7612_13
BM456075 AA287437 AW503282 AW500236 AW505532 BM476391 BM151675 AW500059 AW503519




AW505387 AV760244 BM463484




AW499930 AW499907 AW504121 AW504494 AA286674 AI276686 AA286673 AW407901 AW503798 BG177295




BG389213 BM145086


454552
1061234_1
AW806924 AW866478 AW866473 AW866390 AW866309 BF373982 AW866298 AW866539 AW866521 AW866547




AW866454 AW866537




AW866517 BF373957 BF373949 AW866403 AW866369


417414
10043_1
AB049113 U31930 NM_001948 U90223 AK000629 BI091680 BG697899 BG700386 BE644721 BE673841 BE670064




BE218639 AW160384




BI489866 AW341118 AW629827 AI697600 BE222283 BF938984 BE550008 BF058963 BE549576 BE504213 AI951891




BG654389 AW162006




BE551158 BG655751 BI438412 AI634515 AW967946 AI373097 AI937879 BF477872 AI693247 AA284034




AW968574 AW968748 AL519489




AA491130 M89913 BG403290 M504296 AA263067 AA366402 BF899218 AW007239 AU119115 D55898 BI333317




AI879028 AV651114




BE502892 AW341323 BF478012 BG705392 BG505144 AV747151 AA416647 W65362 BF170355 AI361859 AI061446




AA744361 AI800124




AI888707 AI810305 AW950219 AI266370 AI202472 AA731309 AI352257 BE327789 D19871 AW059539 BM263848




AI828180 AA994216




AA721362 R76541 AA806886 AA861025 AA687747 AI304562 BI091131 BF206146 BI255334 BE254729 BG610639




AA278989 BF698002




AA446533 BF970255 BE928140 AI348028 AI521455 AW474561 AW591403 AI654314 AV701730 AI433388 AW166689




AW976899 BE568767




AA887905 AA766415 BG168154 BF317403 BI855761 BI758597 BF216176


453959
9900_1
NA


439195
21979_1
AF086037 H89360 H89546


400223
2368_1
NM_005648 BC013809 L34587 BF103775 BG702618 BG716553 BI667090 BG505863




BF983483 BG718195 BI857891 BG501016 BM043599




AL521812 BG705730 BI495545 BI495546 BF112248 BM023182 BM023123 AI075173 AW051799 BF058224




BI324885 BF436008 AA398446




BG822375 BM019558 BM023382 BG164174 N56909 BI467064 BM023464 AI207475 BM311415 BG758430 BG758807




AI934826 N90351




BG422026 BE910312 AI027778 AI081950 AI360890 BM009115 AI191829 BG759697 AI138728 AA399403 AI355589




AI336427 AA868702




AA393660 AA025127 BG027630 AA962774 AA631224 BG940967 BE791087 AA573315 W81685 AA393525 BG944103




AI339125 AI149864




AA977655 N90314 BE612839 BG491847 AI129091 AA461234 AA781198 AA759256 AA888954 AA975844 AI184099




AI018025 AA398363




AI003331 AI193380 AA626020 AI244476 AI601114 AW135664 AI206607 AW263599 AA813219 AI684453 AA878626




AA772222 AI085496




AI630226 BG940966 AI022010 AA770649 AA887624 AA491739 AA974295 BG530040 AA037091 AA019912 BI160457




H64512 BG503896


454067
98108_1
AI809849 AW241782 AA041455


442092
22756_2
BM449821 BM069895 BM023170 AW025563 BG152606 BM023452 AI862106 BG959957


430504
5477_6
BE219720 BF475241 AI571723 BE219848 BI789268 AI224899 AA724864 AW771467 AA480255 AW845616




AI440295 H52800 BE218790




AI681575 AW300064 AW262133 H21568 AI363015 AI884914 H86948


406731
0_0
AI559131


457447
44331_1
X78261 AI214094 AA483530 AW972127


455679
151610_1
BG007296 BF330853 BF747375 BE066356 BE066292 BF330900 BF747142 BE066419 BF742510 BE066529




BE066298 BF742516 BF746603




BE066274 BF334312


430534
1233361_1
AW968508 AA480908 AA480971


409490
2925095_1
AA084745 AA084736 AA075064


425376
34867_1
AB075838 AK056181 AW958603 BE390381 AA356365 BF196303 H10404 Z39522 AV725320 AV727868 BM454236




AA365277 R38602 H10612




BF212958 AA481673 R13757 BG026236 AI498819 AA894612 AA610077 AW352149 AA481433 AW079577 AI885666




AA532463 AI624958




AI624974 H93131 BE566327 AI955749 AI478116 BE546266


437440
2497201_1
AA846804 AA757581 AI050950 AI092024 AA838807


453327
23886_2
AL562496 BF696621 AV704702 BG898086 AW968374 AA481612 AA431838 AA476509 BM271915 BI438471 AW021944




AA465428 BI492903




AW500180 AI337886 AW628927 AI337904 AI865657 AI095827 AI277333 AI192671 M910864 AI056123 AI359717




AI801670 AA554891




BF002895 AI146699 AI277967 AI421245 AI554684 AI076969 AA127232 AI090547 AW295617 AI339523 AI144431




AA857201 AA476409




AA465393 BF445672 AI247616 AA905002 AA723681 AA465357 AA465372 AI027015 BF939274 BE769036 AA983718




AI796838 BF373700




AW864097 AA506221 BE326573 AW368726 AA035002 AA149487 BE887617 AI692779 AI183608 AA858044 BI467397




AA046036 W67790




W32699 AA431436 AA035510 AA836772 AA481546 BM264551 AA465448 AA339752 BF698980 AA621703 BE825936




W67848 BE766805




N66434 N59817 N26170 AA668310 BE768929


428384
775_1
M54968 AA861543 AA356548 AI469981 NM_004985 BC013572 AW242010 AI740449 BF588730 AA425263




W21091 AI554920 T28976




AW966530 BC010502 BM146110 AW504574 BG142117 AA232870 AI539465 AU123937 BI260541 BG261289 N24354




N32462 H08297 F05452




AA281203 N80109 AA330460 D51551 BE178107 BE177839 BE178094 BE178141 BE931948 BE178093 BE178215




AL138354 AI091259




AW020801 AA287991 BE178352 AA281183 BE178186 R70669 BI833742 BE178449 BE178043 W47526 BE178018




BE834453 W93668




BE177936 AL576273 AU151852 AI004579 AW453052 AA287927 BM144801 AU155143 AA281094 AA737010 AA872481




AA676681 AA843916




AI697660 AA564243 BF109372 AI015987 BF432094 AA937541 AI334416 AI281159 AA582189 AA553559 AW160515




AA255527 AA670007




AA808271 AA281015 AA649252 BE464958 AW167917 BF436494 AA525301 AI889481 AI364302 AW173466 AI676214




AA243624 AA648116




AA854442 AA721296 F01713 BE178360 BE178299 BE178460 BE178385 BE178424 AI301629 BE049265 AU151277




AU155121 AU155337




AA889246 AU153181 AA342730 AW601642 H08199 R41588 R99351 H84241 W47527 R26447 R49696 H02312 R79833




AV716970 AA262387




BE178441 BE178356 BE178100 BI491761 BE178467 BE931952 BF758698 BE177893 BE178336 AA256711 W80934




BE178447 AV689618




BE178438 BE177844 AV659669 BG619554 AU134516 R35396 BE178029 R28455 AW368425 BE178017 BE177999




R34165 R79640 BE178422




BF761849 BE178196 BE178443


426295
510_1
BE880923 BG390191 AW470082 AW014585 AI423255 BI714731 BG054894 AW780248 N31683 AW664132




AW467353 AI983152 AA617918




BF447795 AI088357 AA807328 AA576970 AI741153 AI755003 AI474016 AI422030 AI348114 AW997085 BM271753




AI363147 BM311311




AI146640 AI246771 AW512619 AI359020 BG054897 AI292234 AI215830 AI283836 C06205 AW503423 AW272680




N33205 AW873021




AA070724 AI753886 AW192487 AI087151 AA658909 AI346368 AI335677 AA825442 AW440066 AW131357 AW513210




AI082314 AI085455




BE551404 AA780704 AW008596 AI796964 AA917471 AI400531 AA668626 N72207 AI306482 AW440562 AI084687




AA347280 AA063536




BF477389 AI241662 AA931543 AA484310 AA812486 AI032216 AA665779 AI916336 AI350590 BF198106 AI433377




AI300638 AI672626




AI282741 AI351487 AW105544 AA973627 AW517914 AA715424 AA508454 BF334080 AI274618 AW367201 AW572619




AW469088 AA382095




AI368364 AI146934 AI357180 AI361181 BI911347 BI871044 AA136325 BF084010 BF084007 AA335788 AI920878




AA809614 BE932941




AI678261 C75308 AI148479 BE178174 W88513 BM013627


436024
138548_1
AI800041 AA703553 AA984529


419881
3973_1
AL573520 BF058611 AA329340 AL578426 AA748587 AA251524 BG056795 AA989242 AA716558 BI860141




AW967619 AI949529 AI889732




AI871690 AA830473 AA769808 AA570708 AA844702 AA838659 AI653883 AW768563 AA442846 AW273448 AA437017




AI493986 AW628781




AL562775 AI870399 AI432295 AW439601


414022
32320_46
W44916 F07627


415524
1875412_1
R13958 Z45262 F11541


459428
259201_1
AW502680 AA258989


412634
131633_1
U55984 AA195883 AA447957 AA393452 AA384799 AW958952 W68044 AA197345 AI241933




R59505 W67965 AA826474 AI336006 AA931733




AW025414 AI769180 AI355738 AI860952 AA907417 AW408679 AA453139 AA938346 AI279697 AA121899 AA400768




AI559827 AA448889




N62400 AW236656 AA904207 W79380 R59504


416721
1987834_1
H80001 H87290


454900
1077113_1
AW838132 AW838129 AW838458 AW838513 AW838430 AW838373


442462
1984399_1
AF031405 H73415


434665
115504_1
AA642125 BG311079 BG311075 AA654516 BG311138 BG311173


400239
16458_1
BC003160 NM_001610 X12548 BG386685 BI760866 BI559619 BG323829 AU135543 BI834101 AU142120




AU124511 AU124889 AL558171




AU117286 BI824000 BG386610 BI753285 BI223475 AU134828 BM126369 BE206493 BF751498 AL544274 AY007137




BI828921 BE870130




BF771242 BI835451 BI765655 BI820955 BI223344 BG015924 BI759894 AL527413 BF310588 N31870 N23974 BE514914




T48863 AW860257




BF334625 AA883860 AU144168 AA442562 AU159491 AU148353 AA564123 AU148667 AI377256 AW664004 AI871712




AI141486 AI332351




AI339094 BE206109 AW519033 AI817729 AI332490 AI149455 AI857411 AI763154 AI751608 AI377222 AI081956




AW664229 AI275872




AW168546 AA975270 AI367408 AI687729 AI269164 AW105344 BM193081 BE550930 AI082116 AA854691 AI056249




AI221062 AI290113




D51818 AA732409 BG055125 N85878 AU156121 BF093671 AA053070 T28548 AL570460 BI006862 BI007207 AA373620




W95069 AA629136




AA708164 AI014886 AW168697 D51623 AA577168 AI094208 AA028946 AA975078 R16815 BG151132 AI276297 D51676


455148
1099439_1
AW858423 AW858403 AW858594 AW858406 AW858587 AW858549


434775
118125_1
AA648983 AA741088 AW029205 AI925642 AA715292






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0367]

32








TABLE 11C








Pkey
Ref
Strand
Nt_position







402994
2996643
Minus
4727-4969


402264
3289984
Plus
184006-185825


402424
9796344
Minus
64925-65073


404649
9796926
Minus
100027-100399


405533
9755498
Minus
75690-75853


402230
9966312
Minus
29782-29932


400751
7331445
Minus
35395-35533


400694
8118802
Plus
94288-94442


401467
6682292
Minus
66845-67037


403789
8084957
Minus
64056-64148, 65262-65425


406117
9142932
Plus
54304-54584


406420
9256411
Plus
157797-158054


404426
7407959
Plus
77842-77954


401274
8954206
Minus
111258-111378


400929
7651921
Minus
122033-122241, 123483-124028


403790
8084957
Minus
87826-87947, 89835-90002


405268
4156151
Minus
24404-24521


402855
9662953
Minus
59763-59909


400517
9796686
Minus
49996-50346


402976
9795206
Minus
25819-25969


403743
7652003
Minus
136463-136646


403828
9838214
Plus
31755-32148


405689
4508117
Minus
92558-92698, 94282-94382,





97977-98180, 9920


403742
7212067
Plus
84805-85525, 91096-91227,





93970-94057, 9523


403319
8318526
Plus
124240-124459, 125182-125409


404602
8705107
Minus
138628-138893


403654
8736093
Minus
28634-28758


402396
1905896
Plus
4426-4648


405372
2078459
Minus
10148-10272, 11205-11349,





11436-11560, 1178


403694
7107765
Plus
142925-143080,





165505-166186, 167486-16763


404584
9857511
Plus
138651-139153


404240
5002624
Minus
116132-116407, 116653-116922


404409
7342122
Plus
22113-22290


405601
5815493
Minus
147835-147935, 149220-149299


404919
7341872
Plus
1482-1609


403738
7212067
Plus
38434-38562, 56876-57007,





59789-59876, 6071


401847
7139731
Plus
85447-85593


401928
3873182
Plus
54932-55070


406274
7543787
Plus
932-1123


401558
7139678
Plus
103510-104090


403746
7652036
Plus
93612-93887


402945
9368458
Minus
100591-100710


400487
8919452
Plus
19369-20782


403330
8516153
Plus
116558-116698


400975
7139779
Minus
108473-108847


400552
9801071
Plus
93101-93276


403147
9799812
Plus
171145-171419


406605
8272666
Minus
23275-23493, 23723-23903


402907
6706902
Minus
8561-8692


401431
8217913
Plus
81467-81661


401047
6705887
Minus
4804-5035, 5133-5314


404813
3355600
Plus
2672-2989


406137
9166422
Minus
30487-31058


400763
8131616
Minus
35537-35784


403608
8308266
Minus
121321-121476


400840
9188586
Plus
113882-114121


403827
9838214
Minus
14941-15869


403809
8568861
Plus
33910-34129, 34583-34862


403142
9444521
Plus
89286-90131


402813
6714723
Minus
45613-45781, 47581-47731,





49698-49805, 5095


403538
8077008
Minus
119579-119926, 120614-120784


402969
9581784
Minus
19036-19175


406182
5923650
Minus
28256-28935


406364
9256114
Minus
50715-50833


405232
7249042
Plus
125904-126063


403417
6862691
Plus
199375-199572


405257
7329310
Plus
73121-73273


403585
8101208
Minus
131266-131769


403832
2121307
Plus
76091-77344


402964
9581599
Minus
46624-46784


401060
8117674
Minus
110262-110791


406350
9256015
Minus
186117-186362, 190904-191095


403056
8954178
Plus
95479-95570, 96434-96703


406341
9255965
Minus
117712-117896


404694
9799957
Minus
128092-128227


402668
7283250
Plus
67493-68044


405296
3779036
Plus
8072-8273


402729
9211639
Plus
78980-79093, 79333-79467,





80173-80290


405122
8137462
Minus
95449-95646


402737
9212184
Minus
13358-13552


404231
8218035
Minus
61077-61322


405287
3928029
Plus
89802-89999


405695
4309958
Plus
51860-52162


401112
9966198
Minus
60628-61041


403671
7272159
Plus
104461-104701


400886
9958187
Plus
70649-71114


402474
7547175
Minus
53526-53628, 55755-55920,





57530-57757


405064
7658416
Plus
81207-81416


402007
7381786
Plus
143964-144081


400967
7770682
Minus
32697-32999


404497
8151650
Minus
593-1416


404692
9799952
Plus
49258-49403, 54226-54341,





63837-63988


405166
9966302
Plus
40526-40891


405270
4156145
Minus
3952-4123, 6886-7010, 8541-8728


402109
8131678
Minus
171722-171859, 173197-173303


403363
8571785
Plus
67156-67285, 67620-68007


406023
8272661
Plus
205623-205936


403185
9838287
Minus
108676-108803


403611
8347965
Minus
130635-130774


403707
7108128
Minus
132794-133294


404124
9796734
Plus
13539-14192


403292
7230870
Plus
99123-99367


403027
7670575
Plus
60696-60932, 61362-61521


406535
7711477
Plus
83135-83362


405922
6758795
Plus
126307-126677


406238
7417725
Plus
31155-31657






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0368] Table 12A lists about 254 genes down-regulated in Hepatitis C positive liver tissues compared to Hepatitis C negative liver tissues. These genes have the potential to be diagnostics and/or prognostic markers for Hepatitis C infected liver tissues. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the t-test p-value between the Hepatitis C positive liver tissues group and the Hepatitis C negative liver tissues was less than 0.01, and that the differences between the average “standardized values” of the several different Hepatitis C negative liver tissues was equal to or above 1.0 more than the average “standardized values” of the several different Hepatitis C positive liver tissues. The “standardized values” of the Hepatitis C liver tissues were derived by subtracting the median of the Hepatitis C negative liver tissue values from each probeset value, then divided by the interquantile range (IQR) of the same Hepatitis C negative liver tissue values.
33TABLE 12APkeyExAccnUniGeneUnigene TitleR1R2441475AI929602Hs. 177phosphatidylinositol glycan, class H6.80E−059.91453863X02544Hs. 572orosomucoid 11.46E−035.21449761AB009698Hs. 23965solute carrier family 22 (organic anion2.10E−034.68445610AI831648Hs. 143993ESTs1.53E−034.63404473ENSP00000247423: D-siglec precursor.3.16E−034.40440721AW183540Hs. 85273ESTs9.60E−054.14442820AW293459Hs. 6314ESTs1.50E−054.04446221AI744445Hs. 167073Homo sapiens cDNA FLJ13047 fis, clone NT7.92E−053.41449184AW296295Hs. 196491ESTs5.21E−103.23454947AW846590gb: QV0-CT0180-011099-025-d07 CT0180 Homo1.84E−063.21434180AA921757Hs. 116180ESTs7.08E−073.01423744D26158Hs. 1701ELAV (embryonic lethal, abnormal vision,2.94E−033.00410482AW772187Hs. 191859ESTs7.60E−062.93422472R59096Hs. 279939mitochondrial carrier homolog 19.77E−052.89454136AA046477Hs. 62813insulinoma-associated protein IA-64.63E−042.89458818AI523857Hs. 232257ESTs4.91E−052.87457960AA771881Hs. 298149ESTs3.65E−032.84446433AW293404Hs. 211986ESTs1.75E−042.73409212AI082423Hs. 141892ESTs1.60E−062.72435590AF216389Hs. 148932sema domain, transmembrane domain (TM),8.04E−052.72402845ENSP00000246267: KIAA0444 PROTEIN (FRAGME9.30E−062.67400692Target Exon4.42E−102.67411449AW847318Hs. 290131KIAA1819 protein1.36E−042.66455765BE082222gb: QV2-BT0636-070500-196-b08 BT0636 Homo2.68E−032.64458674AI304386Hs. 150836ESTs5.42E−072.59455919BE157345gb: RC3-HT0371-110300-017-b01 HT0371 Homo6.41E−042.58412998BE046254gb: hn38g09.x2 NC_CGAP_RDF2 Homo sapiens6.95E−052.56417574R00348gb: ye69e06.r1 Soares fetal liver spleen1.30E−032.53437957T97069Hs. 282787gb: ye50f03.r1 Soares fetal liver spleen7.21E−082.51452777AW449161Hs. 217300ESTs2.81E−072.50428547AF120491Hs. 184889potassium voltage-gated channel, Shal-re3.13E−042.49435715T78013Hs. 167279FYVE-finger-containing Rab5 effector pro2.14E−042.48456636AW205448complement component 31.09E−052.46432342AL036128Hs. 274404plasminogen activator, tissue3.57E−052.46427269AA400147Hs. 125234chromosome 21 open reading frame 542.37E−072.42409840AW502122gb: UI-HF-BR0p-ajr-c-08-0-UI.r1NIH_MGC_52.53E−062.42414562AW955734Hs. 112195ESTs, Weakly similar to 2108402A carniti1.68E−052.41420796L34355Hs. 99931sarcoglycan, alpha (50 kD dystrophin-asso3.13E−032.38432745AI821926gb: nt78f05.x5 NCI_CGAP_Pr3 Homo sapiens1.10E−042.37428006AA418743Hs. 98306KIAA1862 protein8.66E−042.35407563R06177Hs. 19613ESTs1.89E−082.34400435AF282973protocadherin beta 81.15E−052.32430878BE500985Hs. 248107EDG-3 (endothelial differentiation, sph2.20E−052.30413946BE185066Hs. 2055gb: MR1-HT0709-100500-002-c09 HT0709 Homo1.67E−032.30437015AI970163Hs. 237198ESTs3.21E−032.27458988AW410431Hs. 283670CGI-119 protein9.83E−062.26454810AW832917gb: QV2-TT0003-161199-013-h06 TT0003 Homo3.07E−032.24458299AI024834Hs. 131729ESTs2.45E−062.22438397AA806478Hs. 123206ESTs1.20E−042.22404224Target Exon2.72E−102.22405800Target Exon1.33E−062.22411772BE170301gb: QV4-HT0536-040500-193-f05 HT0536 Homo5.16E−042.21401149Target Exon9.04E−072.20405334Target Exon3.80E−042.20441611AW590829Hs. 133463ESTs1.73E−082.19407457AJ242724gb: Homo sapiens mRNA for partial putativ4.71E−052.18414024AA134712Hs. 22410gb: zm79g08.r1 Stratagene neuroepithelium3.72E−072.18450703AA011202nuclear factor I/C (CCAAT-binding transc1.02E−062.17436871X15667gb: Human mRNA for glutathione peroxidase3.18E−072.16417752C15737Hs. 269386ESTs2.59E−052.16404958Target Exon8.05E−052.16459235BE246010Homo sapiens mRNA for FLJ00038 protein.3.75E−052.14416626H69171Hs. 205978ESTs, Moderately similar to ZN91_HUMAN Z3.33E−032.14419695N99713Hs. 109514ESTs6.58E−042.13412496R87592Hs. 12509gb: ym91b06.r1 Soares adult brain N2b4HB59.12E−052.12426505BE185582gb: IL5-HT0731-010500-078-g07 HT0731 Homo7.94E−042.12453840AW846927Hs. 46808gb: RC3-CT0197-150999-011-A01 CT0197 Homo1.36E−042.12423053BE312679gb: 601148138F1 NIH_MGC_19 Homo sapiens c1.00E−052.12436690AA373970Hs. 183096ESTs, Highly similar to S15536 homeotic9.53E−052.11405058Target Exon5.01E−072.11426402BE387327Hs. 80475polymerase (RNA) II (DNA directed) polyp3.46E−062.10449243AW295031Hs. 198671ESTs1.86E−052.10444163AI126098FGENESH predicted RNaseH domain-containi6.37E−042.10440730BE561722gb: 601345466F1 NIH_MGC_8 Homo sapiens cD5.62E−052.09437161AA054477Hs. 25391ESTs9.90E−052.08447721BE619620lysyl oxidase1.33E−062.08455973BE175424gb: RC4-HT0578-170300-012-d01 HT0578 Homo1.01E−032.06407598AW083834Hs. 246397ESTs3.87E−032.06457736AK000390Hs. 150549hypothetical protein FLJ201242.25E−032.05433303AW444881Hs. 77829ESTs1.28E−052.04456040AW390834Hs. 75874pregnancy-associated plasma protein A2.69E−042.04454707AW814989gb: MR1-ST0206-170400-024-g05 ST0206 Homo2.84E−042.04410739AL157438Hs. 324473Homo sapiens mRNA; cDNA DKFZp434A115 (fr4.80E−032.04430070AF197927Hs. 231967ALL1 fused gene from 5q311.38E−062.03452621N44030gb: yy50c11.r1 Soares_multiple_sclerosis3.48E−062.02422375AA768234Hs. 292430ESTs5.15E−042.02419555AA244416gb: nc07d11.s1 NCI_CGAP_Pr1 Homo sapiens1.34E−062.01427840AI216654Hs. 98251ESTs5.62E−062.00431249NM_004283Hs. 8036RAB3D, member RAS oncogene family2.90E−032.00438573AW135084Hs. 127264ESTs, Weakly similar to JC5314 CDC28/cdc1.64E−051.98451402AI793167ESTs, Highly similar to AC004836 1 simil1.74E−041.98447715AW291714Hs. 221703ESTs1.95E−071.98428744BE267033Hs. 192853ubiquitin-conjugating enzyme E2G 2 (homo2.70E−041.98414063H26904Hs. 75736apolipoprotein D1.83E−051.98434646AF147445gb: Homo sapiens full length insert cDNA3.61E−031.97425036BE467912Hs. 154294discs, large (Drosophila) homolog 11.65E−031.97452742AW589945Hs. 97876hypothetical protein DKFZp564K03221.71E−051.96400663Target Exon9.40E−041.95454328AW372097Hs. 278429hepatocellular carcinoma-associated anti5.19E−031.95403686C4001366*: gi|9837427|gb|AAG00570.1|AF2872.69E−041.94402399C19001025*: gi|11275298|dbj|BAB18302.1|(5.65E−041.94414584BE409585Hs. 117715hypothetical protein MGC108502.52E−051.94409795AI934808ESTs, Weakly similar to T46338 hypotheti6.48E−041.93445123AI762911Hs. 145369ESTs3.97E−071.93457561AA331517Hs. 286055chimerin (chimaerin) 27.32E−041.93421511AA488940Hs. 105216hypothetical protein FLJ111254.63E−061.93415167AA160784Hs. 26410ESTs9.17E−031.92445403AI222423Hs. 308322ESTs8.85E−041.92442793AI017798ESTs, Weakly similar to TI47_HUMAN CARGO7.50E−081.91401624Target Exon6.28E−071.91413537BE146866gb: QV4-HT0222-211099-014-f06 HT0222 Homo2.43E−051.90444832AI807563Hs. 148452ESTs3.77E−031.88455968BE168828gb: QV1-HT0517-020400-145-f04 HT0517 Homo1.48E−051.88401706Target Exon2.57E−041.87416648R97488gb: yq53b09.r1 Soares fetal liver spleen7.47E−051.87458867AW995393gb: QV0-BN0042-170300-163-g12 BN0042 Homo2.20E−071.86405263ATPase, Na? transporting, alpha 2 () pol1.42E−041.86457148AF091035Hs. 184627KIAA0118 protein8.35E−051.84403796Target Exon2.31E−031.84450657AK001579Hs. 25277hypothetical protein FLJ210653.73E−051.84405639Target Exon4.60E−031.84425526AA359933gb: EST69040 Fetal lung II Homo sapiens c1.86E−031.84407290AA633861Hs. 12106ESTs, Weakly similar to ALU7_HUMAN ALU S5.47E−041.83448647AI702965Hs. 45005hypothetical protein FLJ129601.49E−041.83448871BE616709Hs. 159265kruppel-related zinc finger protein hcKr7.64E−051.83432018AA524447Hs. 152377ESTs2.23E−041.81433545AA868510Hs. 112496ESTs5.50E−051.81427789AA412428Hs. 48642hypothetical protein FLJ230932.54E−031.81429013AJ012590Hs. 194728hexose-6-phosphate dehydrogenase (glucos2.54E−051.80446887AI346656Hs. 156652hypothetical protein FLJ228007.83E−071.79441718AW573183Hs. 127380ESTs3.62E−061.79454287AF075292Hs. 49585fibroblast growth factor 182.82E−051.79435125AA381895Hs. 284204F-box only protein 296.24E−071.79408099AW151637ESTs, Moderately similar to Z195_HUMAN Z1.70E−051.78434884AF161340Homo sapiens HSPC077 mRNA, partial cds3.95E−041.77428303AW974476Hs. 183601regulator of G-protein signalling 162.82E−041.76435028AW193035Hs. 187370ESTs2.89E−031.75421472NM_003323Hs. 104636tubby like protein 21.28E−041.75438687AA814084ESTs5.89E−041.74412004NM_005042Hs. 73952praline-rich protein Haelll subfamily 26.32E−051.74403794Target Exon9.24E−051.74441184AA922009ESTs6.67E−071.73430358AW604424Hs. 239891G protein-coupled receptor 351.21E−051.73410312AW850953gb: IL3-CT0220-150200-068-A11 CT0220 Homo4.73E−061.73403772NM_003061: Homo sapiens slit (Drosophila)1.08E−041.73405126Target Exon2.23E−041.72438338NM_014861Hs. 6168KIAA0703 gene product4.80E−051.72456782AK000462Hs. 132071ovarian carcinoma immunoreactive antigen8.79E−051.72422097X61755Hs. 111473homeo box C56.28E−031.71415593F13043Hs. 6918ESTs4.22E−031.71409545BE296182Hs. 19002hypothetical protein MGC46758.81E−031.71453855AA039576Hs. 37858ESTs, Weakly similar to ALUB_HUMAN !!!!5.82E−031.71400729Target Exon3.52E−051.70457505AL044659Hs. 43791ESTs6.22E−041.70420548AA278246Hs. 920ESTs1.27E−031.69433899AW628168Hs. 152684ESTs1.22E−031.69423103AA322029gb: EST24685 Cerebellum II Homo sapiens c7.95E−041.68435367AI917684Hs. 85524for muscle specific ring finger 22.37E−031.68447135T58148gb: yb98g06.s1 Stratagene lung (937210) H2.13E−061.68429642X68264Hs. 211579melanoma cell adhesion molecule (MCAM) (1.65E−061.68422189AF252292Hs. 112933Tax interaction protein 407.46E−031.68422028AW090340Hs. 14337Homo sapiens cDNA FLJ14407 fis, clone HE3.17E−031.67441777AI733440Hs. 127735ESTs8.00E−041.67415897H08323Hs. 268712ESTs3.51E−041.67403243Target Exon3.28E−051.66402690Target Exon1.11E−051.66445132Z44811Hs. 14928hypothetical protein FLJ129031.10E−051.66405677Target Exon9.97E−031.66441477BE379434Hs. 192127Homo sapiens, clone IMAGE: 3609326, mRNA,1.03E−031.66400522Target Exon1.90E−061.66407283T51008gb: yb55e08.s1 Stratagene ovary (937217)7.26E−051.65440509BE410132Hs. 134202ESTs, Weakly similar to T17279 hypotheti6.14E−061.65453449W16752Hs. 32981sema domain, immunoglobulin domain (Ig),4.49E−061.65431107AW451602Hs. 153590ESTs2.58E−061.65410736AA205850Hs. 122823thousand and one amino acid protein kina2.55E−041.65410255AA234006Hs. 321264LBP protein 321.07E−031.64457394M86528Hs. 266902neurotrophin 5 (neurotrophin 4/5)1.37E−051.63406140Target Exon7.83E−061.63408932AW594172Hs. 278513TP53TG3 protein8.73E−031.63453992AW014995Hs. 281080ESTs7.00E−061.62418141AW845738Hs. 171118hypothetical protein FLJ000261.34E−041.62454430AI082777Hs. 61384sema domain, seven thrombospondin repeat2.32E−041.61439335AA742697Hs. 62492NM_052863: Homo sapiens secretoglobin, fa1.22E−051.61433095AK001092Hs. 302480Homo sapiens cDNA FLJ10230 fis, clone HE4.03E−051.61454527AW804626Hs. 151237hypothetical protein FLJ125267.10E−031.61444462AA127530Hs. 286035Homo sapiens mRNA for KIAA1783 protein,6.17E−041.60435724N39308Hs. 117898ESTs5.43E−081.60411181AW820794Hs. 252406hypothetical protein FLJ12296 similar to1.80E−041.60446705AW206634Hs. 224879ESTs3.59E−061.59416249R85267Hs. 107692ESTs6.97E−041.59421539AA292747Hs. 97296ESTs1.44E−041.59423658AB003062Hs. 130760myosin phosphatase, target subunit 23.00E−041.59426254BE018103PP3111 protein1.45E−061.58442674AI124736Hs. 142921ESTs1.19E−031.58407845AL036518Hs. 118598Homo sapiens mRNA for KIAA1878 protein,2.96E−041.58410626BE407727Hs. 199316gb: 601299771F1 NIH_MGC_21 Homo sapiens c1.10E−031.58415160T82802gb: yd38a04.r1 Soares fetal liver spleen3.67E−061.58416397H53035Homo sapiens AFG3L1 isoform 1 mRNA, part3.78E−031.58401371ENSP00000198192*: BA438F9.1 (novel protei1.37E−041.58457008AA410446Hs. 112011ESTs, Weakly similar to unknown [H.sapie7.30E−051.57456093AL135220Hs. 77579apoptotic protease activating factor3.53E−041.57408518BE162203Hs. 314758ESTs2.86E−031.57406357Target Exon1.40E−031.56401554Target Exon4.40E−031.56423143M64676Hs. 124212potassium voltage-gated channel, Shaw-re6.15E−061.56409911N43177Hs. 284217serologically defined colon cancer antig5.78E−031.56445889BE465186Hs. 266958ESTs2.38E−051.55405137Target Exon1.73E−031.55418525AW450369Hs. 86937ESTs2.90E−041.55425169AW292500Hs. 128514ESTs3.54E−031.55404843C22000088*: gi|6678165|ref|NP_033461.1|s8.09E−041.55456764AA325560Hs. 346401ESTs4.17E−041.55412371AW946621gb: RC2-ET0021-280400-011-e12 ET0021 Homo6.83E−031.55458211AA922156Hs. 144751ESTs1.58E−031.55403613C3000680*: gi|5852484|gb|AAD54072.1|AF1312.05E−031.54402534Target Exon2.23E−041.54428189AA424030Hs. 46627ESTs2.07E−061.54401629ENSP00000251306*: HYPOTHETICAL 42.6 kDa P1.46E−051.54426449AL134009Hs. 169936Homo sapiens mRNA; cDNA DKFZp586N1918 (f4.75E−031.53404731NM_006180*: Homo sapiens neurotrophic tyr3.51E−031.53422111W04245Hs. 107761ESTs, Weakly similar to unnamed protein4.17E−041.53451461AI968438Hs. 265349ESTs4.55E−031.53450235AA007512Hs. 17538ESTs3.39E−031.52416323N72630Homo sapiens genomic DNA, chromosome 21q1.17E−051.52438808M73980Hs. 129053Homo sapiens NOTCH 1 (N1) mRNA, complete3.12E−071.52452655R85491Hs. 33466ESTs, Weakly similar to DPOZ_HUMAN DNA P9.50E−041.52431777AA570296Hs. 105470found in inflammatory zone 14.41E−051.52423086AB028984Hs. 123420KIAA1061 protein2.50E−061.51407173T64349gb: yc10d08.s1 Stratagene lung (937210) H2.11E−041.51449482AI784266Hs. 28774ESTs, Weakly similar to I38022 hypotheti1.71E−031.51404219NM_004557*: Homo sapiens Notch (Drosophil1.02E−051.51441493AW070446Hs. 127037ESTs6.77E−041.51405913NM_004349: Homo sapiens core-binding fact2.61E−031.50458223AW297673Hs. 190526ESTs6.98E−041.50452854AA437061Hs. 14060prokineticin 1 precursor1.67E−061.50445735AW503939Hs. 107149novel protein similar to archaeal, yeast1.23E−031.50446052AA358760Hs. 95893gb: EST67699 Fetal lung II Homo sapiens c1.00E−061.50407124R08160gb: yf18a07.s1 Soares fetal liver spleen8.86E−031.49458968AI933128Hs. 25220like-glycosyltransferase1.73E−031.49408937AA210734Hs. 291386ESTs8.62E−031.49403180Target Exon8.69E−051.49432202BE301302Hs. 7200ESTs, Highly similar to AC007055 5 unkno4.82E−031.49407654AW064121Hs. 279175ESTs1.06E−031.48437408AL359598Hs. 36606Homo sapiens mRNA; cDNA DKFZp547B086 (fr7.68E−051.48443495N95833Hs. 80395ESTs4.96E−051.48436666AI191588Hs. 1179TATA box binding protein (TBP)-associate6.61E−031.48426330M77235Hs. 169331sodium channel, voltage-gated, type V, a3.38E−041.48446066AI343931Hs. 149383ESTs7.17E−051.48422754AA316476Hs. 171811adenylate kinase 21.62E−031.48401595Rag C protein3.73E−051.48406089Target Exon4.83E−031.48401899Target Exon8.77E−051.47412433AA102400ESTs7.09E−051.47402137Target Exon2.63E−031.46404701NM_022779: Homo sapiens hypothetical prot2.50E−031.46455663BE065679gb: RC3-BT0316-270400-016-e10 BT0316 Homo7.55E−041.46407032U73799gb: Human dynactin mRNA, partial cds.1.67E−081.46449904AW304472Hs. 200088ESTs1.91E−031.46403474NM_030968: Homo sapiens G protein coupled2.90E−051.45438991W78940Hs. 20526ESTs6.38E−031.45443503AV645438Hs. 282927ESTs7.43E−031.45453224AI989700Hs. 232320ESTs4.46E−051.45452263AA025116Hs. 33333ESTs1.96E−051.45405762CX000374*: gi|11433304|ref|XP_006583.1|h2.15E−041.45427626AI364292Hs. 283696ESTs, Weakly similar to A43932 mucin 2 p5.41E−031.45417741R12418Hs. 274728ESTs1.12E−031.45438526AI090671Hs. 134807hypothetical protein FLJ120577.48E−031.45438173AK001271Hs. 6092f-box and leucine-rich repeat protein 22.09E−031.44458826AI918672Hs. 213783ESTs1.92E−051.44415255R39947Hs. 7237ESTs8.01E−031.44422091AI906339Hs. 97927ESTs9.01E−031.44433010AW970018gb: EST382097 MAGE resequences, MAGK Homo2.64E−031.44422800AW953176Homo sapiens cDNA: FLJ23260 fis, clone C1.03E−031.44439070AI733278Hs. 7621ESTs1.64E−031.44405590CX001497*: qi|4557543|ref|NP_001384.1| ex1.91E−061.43414648H54381gb: yq89a03.s1 Soares fetal liver spleen1.07E−051.43409319AW752736Hs. 33565ESTs6.79E−031.43426065N32049Hs. 29423gb: yw96g08.s1 Soares_placenta_8to9weeks2.67E−041.43445771AI804325Hs. 201060ESTs5.21E−041.43418642AA226049Hs. 297915ESTs2.51E−051.42429521BE048708Hs. 50949ESTs3.99E−051.42414262AW975616Hs. 291469ESTs1.22E−041.42437093AA744334gb: ny59b06.s1 NCI_CGAP_Pr18 Homo sapiens1.78E−041.42421093AA906434Hs. 3776zinc finger protein 2164.09E−051.42404825C22000161*: gi|2443331|dbj|BAA22375.1|(D5.52E−031.42408768AW663111Hs. 94958tubulin tyrosine ligase-like 18.41E−041.41402638guanine nucleotide binding protein (G pr1.03E−031.41406458C14000133*: gi|1082739|pir|C44324 protea2.14E−061.41414327BE408145Hs. 185254ESTs, Weakly similar to T24435 hypotheti2.01E−051.41435026AA744812Hs. 177135ESTs1.80E−031.41445481AW661846ESTs3.72E−051.40410922AW810845gb: MR2-ST0129-221099-013-a03 ST0129 Homo3.02E−031.40412044BE086167gb: PM3-BT0673-260200-001-d01 BT0673 Homo2.88E−081.40457994AW136239Hs. 132922ESTs, Weakly similar to TI47_HUMAN CARGO4.12E−071.40448464AI522053ESTs1.16E−031.40442340AW882532Hs. 8257cytokine inducible SH2-containing protei3.53E−041.39428887AA437009Hs. 98984ESTs6.17E−091.39436558AI360238Hs. 157730ESTs3.23E−041.39428406BE279930Hs. 98564hypothetical protein DKFZp434G09201.31E−031.39427267AI201185Hs. 119164ESTs9.05E−041.39436549AJ297365Hs. 334478hypothetical protein MPMGp800M05499Q31.76E−041.38404923NM_020131*: Homo sapiens ataxin-1 ubiquit3.88E−051.38403209Target Exon3.66E−031.38432909AA570111ESTs, Weakly similar to ALUE_HUMAN!!!!8.59E−041.38459304AW005809Hs. 158291ESTs, Weakly similar to CHD4_HUMAN CHROM5.40E−031.38415597Z44384gb: HSC1ZC041 normalized infant brain cDN5.65E−051.38458544AI631036Hs. 196843ESTs4.62E−041.37440075BE268806gb: 601139917F1 NIH_MGC_8 Homo sapiens cD2.27E−041.37441194BE274581ESTs, Moderately similar to S65657 alpha6.64E−031.37457451H06075Hs. 270232ESTs6.68E−061.37400635C10000818*: gi|7661882|ref|NP_055697.1|K2.66E−061.37432092AF135026kallikrein 91.01E−031.36419042T81429Hs. 221065ESTs1.20E−031.36454537BE391493Human DNA sequence from clone RP5-852M49.75E−031.36446403AW452904gb: UI-H-BI3-aly-h-11-0-UI.s1 NCI_CGAP_Su8.47E−041.36402349Target Exon4.33E−051.36442907AI023763Hs. 79707ESTs1.21E−031.36436394AA531187Hs. 126705ESTs5.26E−091.36440745AW303627Hs. 143301ESTs1.69E−041.36441662AI807406ESTs3.93E−031.36427951AI826125Hs. 43546ESTs3.49E−031.36458354AI024181Hs. 131657ESTs3.18E−031.36414871BE549179Hs. 29008gb: 601078714F1 NIH_MGC_12 Homo sapiens c7.53E−041.36454930AW845987Hs. 68864ESTs, Weakly similar to phosphatidylseri1.57E−031.36456922AA477435Hs. 193669hypothetical protein DKFZp586J11191.19E−031.35453356BE539237Hs. 182698mitochondrial ribosomal protein L208.58E−031.35411154AW819848gb: QV0-ST0294-070300-151-b04 ST0294 Homo8.20E−041.35442558AI000792Hs. 108209ESTs2.62E−041.35459002AI915933Hs. 102647ESTs, Weakly similar to WASP interacting7.83E−051.35452236AI130858Hs. 143218ESTs2.66E−031.35456110AW872878Hs. 289072hypothetical protein FLJ221759.25E−031.35421324BE257515Hs. 103503deoxyribonuclease I-like 29.35E−051.34414614BE390050Hs. 48642hypothetical protein FLJ230935.55E−031.34448544AI535819gb: jun1.P1.G1 conorm Homo sapiens cDNA 39.28E−041.34458575AW362488Hs. 12797DEAD/H (Asp-Glu-Ala-Asp/His) box polypep9.57E−051.34417597BE297053Hs. 347310hypothetical protein FLJ146271.63E−041.34430725AA485056ESTs3.62E−031.34432190T80206Hs. 14716ESTs6.52E−041.34445690AW675572Hs. 193620ESTs2.53E−031.34420813X51501Hs. 99949prolactin-induced protein2.38E−031.34422579BE407266gb: 601301004F1 NIH_MGC_21 Homo sapiens c3.32E−031.34402951ENSP00000243967*: DJ1100H13.4 (putative R4.06E−041.34436516AW134701Hs. 245358ESTs1.00E−031.34424334AA393460Hs. 13386gb: zt71e05.r1 Soares_testis_NHT Homo sap1.50E−051.33432081AW972788gb: EST384883 MAGE resequences, MAGL Homo9.35E−041.33458306AF039185Hs. 41974Homo sapiens, clone IMAGE: 4100953, mRNA1.53E−031.33421228AA811598Hs. 275809ESTs1.31E−041.33402447C1000201: gi|204416|gb|AAA02627.1|(L05196.43E−051.33403545Target Exon5.81E−061.33408376AW971303Hs. 241869ESTs7.57E−031.33420693NM_001972Hs. 99863elastase 2. neutrophil6.28E−041.33426157AA370977Hs. 345728STAT induced STAT inhibitor 31.99E−101.33453196AW003567ESTs1.98E−041.32421798N74880N-acylsphingosine amidohydrolase (acid c4.05E−031.32458077AA100768Hs. 48485ESTs, Weakly similar to I38022 hypotheti1.60E−031.32400343AB045830Hs. 160953Target3.15E−041.32402561Target Exon2.63E−041.32454803AW860148gb: RC0-CT0379-290100-032-b10 CT0379 Homo4.50E−051.32413619BE153524gb: PM0-HT0339-241199-002-C03 HT0339 Homo2.33E−061.31446749NM_016069Hs. 16089CGI-136 protein2.11E−051.31447680AW768676Hs. 302022PR domain containing 161.19E−031.31425012T77666Hs. 92414Homo sapiens cDNA: FLJ22030 fis, clone H6.29E−031.31416675H73802Hs. 35381ESTs1.60E−031.31437568AI954795Hs. 156135ESTs4.02E−031.30401516C3001641*: gi|11359861|pir||JC7326 bood P1.62E−031.30428177AA423967ESTs1.80E−031.30452320AA042873Hs. 160412ESTs1.14E−031.30442496R55073Hs. 76780ESTs6.05E−071.30405691NM_013439*: Homo sapiens paired immunoglo1.56E−061.30409540AW409569Hs. 101550gb: fh01e09.x1 NIH_MGC_17 Homo sapiens cD7.89E−051.30411288AW835511gb: QV0-LT0015-180200-127-d02 LT0015 Homo1.34E−031.30418551T75517gb: yd63c01.r1 Soares fetal liver spleen8.37E−031.30415449H15034gb: ym20a03.s1 Soares infant brain 1NIB H1.60E−031.29457677AA628890ESTs1.76E−031.29423310AA325225Hs. 124023Homo sapiens cDNA FLJ14218 fis, clone NT1.17E−031.29420800AI041991Hs. 132227Homo sapiens, clone MGC: 13138, mRNA, com2.29E−031.29438292AI139006Hs. 122352ESTs1.97E−031.29412429AV650262Hs. 75765GRO2 oncogene5.81E−081.29446528AU076640Hs. 15243nucleolar protein 1 (120 kD)1.99E−041.28454908AW840458gb: CM3-LT0079-180200-096<01 LT0079 Homo1.91E−031.28423505AF064090Hs. 129708tumor necrosis factor (ligand) superfami9.02E−041.28404126ENSP00000211797*: Helicase SKI2W (Helicas2.12E−031.28432749NM_014438Hs. 278909interleukin 1, eta1.09E−031.28450675AA010662Hs. 188639ESTs4.57E−041.28404046NM_019120*: Homo sapiens protocadherin be9.68E−051.28402991Target Exon3.40E−041.28452165R17489Hs. 28264Homo sapiens mRNA; cDNA DKFZp564L0822 (f2.07E−041.28445268AI218358Hs. 175048ESTs4.78E−031.28433664AW292176Hs. 245834ESTs8.30E−031.27416348H65887Hs. 272163ESTs1.09E−031.27442705AI264634Hs. 131127ESTs5.94E−041.27440625BE539853Hs. 22452Homo sapiens mRNA for KIAA1737 protein,3.66E−041.27420459AF016045Hs. 97905ovo (Drosophila) homolog-like 16.83E−031.27413737BE160704gb: PM1-HT0422-170100-005-b07 HT0422 Homo5.31E−061.27408183AW968065Hs. 44143polybromo 11.93E−031.27420380AA640891Hs. 102406ESTs4.61E−051.27454186BE141030gb: MR0-HT0067-201099-002-h11 HT0067 Homo2.63E−031.27438692AB007950Hs. 6360KIAA0481 gene product5.51E−041.27402320f-box and leucine-rich repeat protein 76.75E−061.27414189BE378841Hs. 73452hypothetical protein MGC107913.64E−051.26413961BE207098gb: ba10e09.y1 NIH_MGC_7 Homo sapiens cDN5.19E−031.26454598AW809716gb: MR4-ST0124-241199-026-h09 ST0124 Homo1.50E−041.26408935BE539706Hs. 285363ESTs7.92E−041.26450653AI191771Hs. 29764wingless-type MMTV integration site fami4.58E−031.26403227Target Exon1.60E−031.26439471W69839Hs. 58033ESTs3.83E−031.26433782AF090945Hs. 306564Homo sapiens clone HQ06708.19E−051.26425446U34802Hs. 157433gap junction protein, alpha 8,50 kD (con6.39E−071.26417313AA195602gb: zr32f09.r1 Soares_NhHMPu_S1 Homo sapi3.92E−051.26437180BE180234Hs. 281462Homo sapiens cDNA FLJ14793 fis, clone NT7.39E−041.25436419AI948626Hs. 171356ESTs1.91E−031.25424713AI660243Hs. 318545transmembrane protease, serine 27.11E−031.25401265C18000090*: gi|6678656|ref|NP_032506.1|13.20E−031.25426212S71824Hs. 167988neural cell adhesion molecule 15.71E−051.25410285AA083609gb: zm63d05.r1 Stratagene fibroblast (9377.72E−041.25408432AW195262gb: xn67b05.x1 NCI_CGAP_CML1 Homo sapiens6.30E−041.25449405AA001350gb: zh83h05.r1 Soares_fetal_liver_spleen6.58E−031.25431357T81154gb: yd24f01.r1 Soares fetal liver spleen4.61E−031.24459012AA047221Hs. 59752ESTs7.13E−031.24408725AA131539Hs. 15669ESTs4.13E−041.24428568AC004755Homo sapiens chromosome 19, fosmid 375022.08E−041.24453492AA235214Hs. 184793DKFZP434F195 protein2.09E−031.24404247NM_000500*: Homo sapiens cytochrome P450,3.47E−031.24427595NM_016153Hs. 179756LW-12.01E−031.24408038AW138673Hs. 252928ESTs1.35E−051.24440353AI366674Hs. 286194hypothetical protein FLJ222338.84E−031.24438649AA813136Hs. 143014ESTs1.75E−031.24406370interleukin 111.24E−041.24415037AA159478ESTs2.21E−041.24451005AI751946Hs. 20017chromosome 22 open reading frame 43.85E−031.24404075Target Exon3.41E−031.24401703NM_001053: Homo sapiens somatostatin rece1.24E−041.23402252Target Exon4.93E−061.23412538T31119Hs. 7177ESTs7.66E−041.23440190AW752597gb: IL3-CT0214-161299-045-B06 CT0214 Homo3.52E−031.23402316NM_013447: Homo sapiens egf-like module c3.46E−031.23437913AI140825Hs. 121623ESTs9.11E−041.23458146AI286094ESTs9.62E−051.23452218AI936010Hs. 17649ESTs3.58E−041.23437057BE548498Hs. 84529ESTs, Weakly similar to Z202_HUMAN ZINC3.02E−031.22400818Target Exon1.76E−051.22409749AW977045Hs. 185981ESTs, Weakly similar to gag [H. sapiens]1.55E−051.22422626AA344932Hs. 118786metallothionein 2A4.89E−041.22416666H73028Hs. 268992ESTs1.34E−051.21409975AW839324gb: CM0-LT0069-210100-157-h04 LT0069 Homo1.78E−031.21404900NM_025213: Homo sapiens spectrin, beta, n8.14E−031.21416369AW160617Hs. 24884hypothetical protein FLJ13390 similar to1.83E−041.21417761R13727Hs. 21435ESTs2.43E−041.21419299AI311085hypothetical protein FLJ225732.01E−041.21400877cofilin 1 (non-muscle)8.03E−031.21437032AW867372Hs. 153261immunoglobulin heavy constant mu1.61E−031.21423358AI815474Hs. 343866gb: au47f10.y1 Schneider fetal brain 00001.38E−041.21400111Eos Control3.47E−031.21402610Target Exon4.97E−041.21404769NM_007037*: Homo sapiens a disintegrin-li8.45E−051.20416694AW161284Hs. 79564neuronal PAS domain protein 14.72E−031.20433182AB039920Hs. 127821BWRT protein5.55E−071.20453899AW134536Hs. 243994ESTs2.91E−031.20447563BE536115Hs. 160983EST1.53E−041.20423966AF233523Hs. 136506spectrin, beta, non-erythrocytic 52.87E−051.20447224BE617125Hs. 142076gb: 601441664F1 NIH_MGC_65 Homo sapiens c4.73E−051.20456618BE245649Hs. 345728STAT induced STAT inhibitor 33.29E−051.20432345AW780191Hs. 6523chromosome 1 open reading frame 126.34E−031.20458281AW661820Hs. 44131ESTs1.36E−061.19409280AW372614Hs. 82962rTS beta protein1.51E−041.19436375AJ227870gb: Homo sapiens partial mRNA; ID YG81-16.60E−031.19423308AI365680Hs. 114085Homo sapiens mRNA for KIAA1755 protein.6.34E−051.19417213BE257508Hs. 24719modulator of apoptosis 17.70E−051.19427983M17706Hs. 2233colony stimulating factor 3 (granulocyte5.82E−061.18409818AW500969gb: UI-HF-BP0p-aiy-c-07-0-Ul.r1 NIH_MGC_57.58E−031.18453741AW855522gb: CM4-CT0275-040500-521-c06 CT0275 Homo1.98E−041.18447455H38335Hs. 6750Homo sapiens mRNA for FLJ00058 protein,1.35E−031.18402863C1000493*: gi|9506977|ref|NP_062075.1| ph3.85E−031.18439665W93979gb: zd97h10.r1 Soares_fetal_heart_NbHH19W2.71E−031.18453198AI470361Hs. 61684ESTs, Weakly similar to T17307 hypotheti4.42E−061.18458025AI275406Hs. 32450gb: ql63c10.x1 Soares_NhHMPu_S1 Homo sapi1.60E−051.18439547BE000242Hs. 192068ESTs5.54E−031.17429947AA461163Hs. 270391ESTs, Moderately similar to ALU1_HUMAN A3.37E−031.17455977BE176477gb: RC3-HT0585-160300-022-b01 HT0585 Homo2.00E−041.17457424AW876082gb: CM4-PT0015-071299-057-e05 PT0015 Homo8.04E−041.17430204AA618335ESTs, Weakly similar to YKQ3_CAEEL HYPOT2.57E−031.17450335BE218355Hs. 201781ESTs, Weakly similar to B34087 hypotheti1.65E−041.17458237AI741225Hs. 20924ESTs, Weakly similar to neogenin [H.sapi5.20E−081.17444295AI201301Hs. 143837ESTs5.95E−031.17441860AW451330Hs. 348198hypothetical protein FLJ202626.20E−071.17435218T84045Hs. 119321ESTs2.19E−031.17430885U60181Hs. 248115growth hormone secretagogue receptor6.04E−071.17402012ubiquitin specific protease 152.10E−041.17457204BE264152Hs. 221994ESTs4.15E−041.17458095AI375740Hs. 54580ring finger protein 275.49E−031.17455638BE063665gb: RC0-BT0291-031199-031-d08 BT0291 Homo9.13E−051.16450799AW407504gb: UI-HF-BM0-adk-g-12-0-Ul.r1 NIH_MGC_382.38E−041.16430326BE251590Hs. 239370DKFZP727I051 protein2.52E−031.16431256NM_006093Hs. 251386proteoglycan 32.66E−051.16458857AI627342Hs. 224601ESTs3.20E−031.16412944AA384110Hs. 197143ESTs4.33E−031.16449721AW073727Hs. 210265ESTs1.02E−041.16452773AW138920Hs. 342009ESTs8.96E−031.16431972AI805145Hs. 191711ESTs, Weakly similar to T2D3_HUMAN TRANS1.12E−041.16402411C1002484*: gi|12052832|emb|CAB66589.1| (A2.35E−031.16421432AL049553Hs. 104311novel protein with MAM domain1.40E−031.15444207AI565004cathepsin D (lysosomal aspartyl protease2.97E−071.15423266AA323875Hs. 193574ESTs5.04E−031.15455194AW947513gb: RC0-MT0002-140300-011-e04 MT0002 Homo3.49E−051.15440054AW661947Hs. 6891splicing factor, arginine/serine-rich 64.89E−051.15403567Target Exon7.42E−031.15413309BE312608gb: 601151425F1 NIH_MGC_19 Homo sapiens c1.75E−061.15457140AI279960Hs. 178140ESTs7.01E−041.15458526AI202885Hs. 148611ESTs1.35E−031.15430991AW968826Hs. 106432Homo sapiens cDNA FLJ13410 fis, clone PL3.98E−061.15401831C17000644*: gi|631600|pir||S47094 hypothe5.23E−031.15403248ESTs, Weakly similar to I78885 serine/th5.87E−041.15419909AL136653Hs. 93675decidual protein induced by progesterone8.17E−051.14444552AW295211Hs. 230777ESTs2.00E−031.14441580AA938999Hs. 271414ESTs, Moderately similar to ALU7_HUMAN A2.38E−051.14402190C19000835*: gi|10946730|ref|NP_067362.1|6.88E−061.14414156BE392588Hs. 75777transgelin5.43E−031.14416007N68218Hs. 105998ESTs1.13E−031.14455291S72043Hs. 73133metallothionein 3 (growth inhibitory fac5.19E−051.14456523AI083668Hs. 50601hypothetical protein MGC109864.77E−041.14414314BE312991Hs. 50535gb: 601150275F1 NIH_MGC_19 Homo sapiens c4.85E−031.14433091Y12642Hs. 3185lymphocyte antigen 6 complex, locus D3.42E−031.14402878ENSP00000217420*: BA122O1.1 (A novel prot2.18E−051.14417721R11266Hs. 20755ESTs1.24E−031.14416115BE147652gb: RC1-HT0229-030500-111-a05 HT0229 Homo2.60E−051.14401008Target Exon4.08E−041.14442040AW294162Hs. 301062UDP-N-acetyl-alpha-D-galactosamine: polyp3.70E−031.14437216H13364gb: yl71b11.r1 Soares infant brain 1NIB H1.48E−031.14401037C11000425: gi|4507721|ref|NP_003310.1| ti2.01E−101.14441813BE564575Hs. 151093hypothetical protein DKFZp434G14155.42E−041.14404187NM_019602: Homo sapiens butyrophilin-like1.28E−031.14445071AI280246Hs. 149504ESTs2.53E−031.14444903AW103062Hs. 160391ESTs6.10E−031.13458863BE281219Hs. 179260chromosome 14 open reading frame 43.83E−031.13438327H87407chorionic gonadotropin, beta polypeptide2.14E−051.13407404AF040257gb: Homo sapiens TNF receptor homolog mRN5.77E−031.13459014AW292935Hs. 100057Human DNA sequence from clone RP11-550O87.10E−031.13414182AA136301KIAA1105 protein7.83E−041.13402869Target Exon6.45E−051.13420772AW752656Hs. 222707KIAA1718 protein4.72E−041.13404504Target Exon1.50E−031.13456825H67220Hs. 169681death effector domain-containing4.95E−031.13405593Target Exon4.73E−041.13420167AA256113Hs. 60659ESTs, Weakly similar to T46471 hypotheti8.70E−041.13454077AC005952Hs. 37062insulin-like 3 (Leydig cell)2.15E−031.13412755BE144306Hs. 179891ESTs, Weakly similar to P4HA_HUMAN PROLY1.78E−031.13417639R10467Hs. 339793ESTs, Weakly similar to ALU1_HUMAN ALU S6.58E−031.13449684AI659166Hs. 207144ESTs8.20E−031.12442770AI017267Hs. 203763ESTs6.56E−031.12402255NM_031417*: Homo sapiens MAP/microtubule4.32E−041.12448943AI608810Hs. 193288ESTs1.93E−041.12438254AW269804Hs. 153019ESTs8.64E−031.12428653AA135370Hs. 188536Homo sapiens cDNA: FLJ21635 fis, clone C1.94E−031.12406146NM_003319*: Homo sapiens titin (TTN), mRN8.57E−031.12446947AF146747Hs. 232165polycythemia rubra vera 1; cell surface5.74E−041.12435264AI247780Hs. 117036ESTs2.54E−031.12444459AI680624Hs. 148676ESTs8.40E−041.12444279U62432Hs. 89605cholinergic receptor, nicotinic, alpha p4.90E−051.12403722C4001282: gi|7662006|ref|NP_055550.1| KIA3.96E−031.12452316AA298484Hs. 61265ESTs, Moderately similar to G786_HUMAN P2.13E−041.12409382AA071244gb: zm73g03.r1 Stratagene neuroepithelium4.57E−031.12452947AW130413gb: xf50f04.x1 NCI_CGAP_Gas4 Homo sapiens1.01E−041.12446900AV660909Hs. 282705ESTs3.36E−031.12447955BE544271Hs. 288390hypothetical protein FLJ227952.44E−071.12451383AW239364Hs. 20242hypothetical protein FLJ127886.26E−031.12408112AW451982Hs. 248613ESTs1.07E−031.12404805ENSP00000252109*: KIAA1043 PROTEIN (FRAGM2.50E−041.12403830NM_001328*: Homo sapiens C-terminal bindi1.78E−031.11411507AW850140gb: IL3-CT0219-261099-023-D11 CT0219 Homo6.34E−031.11448169BE252749Hs. 20558hypothetical protein FLJ203454.28E−031.11414125BE253197Hs. 334520hypothetical protein MGC156131.73E−031.11442522AI087038Hs. 146592ESTs, Weakly similar to ALU7_HUMAN ALU S6.74E−041.11447468AL109959Hs. 18632Homo sapiens mRNA full length insert cDN5.61E−051.11418028R36212Hs. 235534ESTs, Weakly similar to ALU5_HUMAN ALU S8.67E−031.11419274U09877Hs. 89864superkiller viralicidic activity 2 (S. c1.52E−031.11450545AW135582Hs. 201767ESTs2.51E−061.11457840AJ245874Hs. 4245chromosome 11 hypothetical protein ORF32.53E−031.11404909NM_025213: Homo sapiens spectrin, beta, n5.66E−041.11412419AW948630gb: QV0-FT0001-050500-226-g05 FT0001 Homo4.87E−031.11456126AA164743Hs. 187617hypothetical protein FLJ139416.48E−041.10401450NM_031464*: Homo sapiens hypothetical pro5.69E−031.10428680U69199ESTs, Weakly similar to CGHU1S collagen7.32E−041.10423499AW608884Hs. 28068ESTs5.44E−051.10447755AI802667Hs. 161348ESTs6.52E−041.10426070AF111170Hs. 306165Homo sapiens 14q32 Jagged2 gene, complet7.77E−051.10407631AW574891Hs. 55067hypothetical protein MGC154372.49E−031.10441548AW394255Hs. 127143ESTs2.03E−041.10430820AF194815immunoglobulin lambda variable 4-32.28E−031.10456469NM_005109Hs. 95220oxidative-stress responsive 14.60E−051.10420239NM_005544Hs. 96063insulin receptor substrate 18.63E−031.10446541N73773Hs. 282950ESTs2.36E−031.10417469AW189533Hs. 252748Homo sapiens cDNA FLJ20394 fis, clone KA8.97E−041.10458126AW979136Hs. 124629ESTs1.82E−041.10442364AA993149Hs. 129895ESTs, Moderately similar to TBX3_HUMAN T2.74E−041.10420958AA309431Hs. 66interleukin 1 receptor-like 11.93E−041.10431111AB033072Hs. 250015KIAA1246 protein3.00E−051.09435773AW022047Hs. 41119otoraplin2.74E−041.09431365AA504080Hs. 191958immunoglobulin superfamily receptor tran1.23E−031.09415016N62934ESTs2.17E−041.09459233AI939966gb: MR0-CT0015-160799-002-b06 CT0015 Homo9.36E−031.09454063AF171928Hs. 37055fibroblast growth factor 55.43E−031.09412518BE047637Hs. 334859hypothetical protein FLJ102973.60E−061.09424324AA346316gb: EST52440 Greater omentum tumor Homo s1.61E−031.09412202AW900890Hs. 21782ESTs, Weakly similar to ALU7_HUMAN ALU S1.69E−031.09453573AL042961Hs. 95111Homo sapiens cDNA: FLJ23080 fis, clone L2.27E−041.09420599AW294971Hs. 172084Homo sapiens, clone IMAGE: 3627860, mRNA,4.38E−041.09416416H73127Hs. 141269ESTs, Moderately similar to ZN91_HUMAN Z7.56E−031.09405316C7002129*: gi|3638957|gb|AAC36301.1|(AC03.56E−051.09404364Target Exon4.89E−031.09445097W26975Hs. 46736hypothetical protein FLJ234763.64E−041.09431807AW970894Hs. 324430ESTs, Moderately similar to 1207289A rev1.66E−041.09439760AL355741Hs. 21641Homo sapiens mRNA full length insert cDN1.36E−041.09425952BE336863Hs. 184456hypothetical protein6.92E−051.08406138NM_000179*: Homo sapiens mutS (E. coli) h5.55E−031.08452155AA812225Hs. 45719KIAA0823 protein4.47E−041.08422388AA310006gb: EST181073 Jurkat T-cells V Homo sapie6.14E−031.08459285BE407166Hs. 334812hypothetical protein DKFZp586K07174.84E−041.08424397AI950320gb: wp08d10.x1 NCI_CGAP_Kid12 Homo sapien7.44E−031.08451285AW137912Hs. 227583Homo sapiens chromosome X map Xp11.23 L-8.92E−051.08441395AI681412Hs. 176655ESTs3.36E−041.08452703AW299887Hs. 213402ESTs2.32E−031.08402338Target Exon4.16E−051.08420988AW006352Hs. 159643ESTs, Weakly similar to T32554 hypotheti3.36E−031.08409510AW877400Hs. 191782ESTs, Weakly similar to ALU1_HUMAN ALU S6.11E−041.08449236AJ403126Hs. 26373Homo sapiens cDNA: FLJ23449 fis. clone H2.62E−031.08420243AA256874Hs. 187631ESTs, Weakly similar to Y076_HUMAN HYPOT6.50E−031.08404244Target Exon3.53E−031.08423546AW341131Hs. 146345ESTs1.20E−041.08417967BE244373Hs. 1119nuclear receptor subfamily 4, group A, m9.37E−051.07418784T41418gb: ph1h3_19/1TV Outward Alu-primed hncDN1.50E−031.07412682AW983772gb: RC3-HN0002-060400-012-h09 HN0002 Homo2.24E−031.07417408F17211Hs. 86092Homo sapiens skeletal myosin light chain2.00E−041.07452104NM_000197Hs. 477hydroxysteroid (17-beta) dehydrogenase 39.02E−041.07408710Y10256Hs. 47007mitogen-activated protein kinase kinase3.05E−051.07402124NM_031891: Homo sapiens cadherin 20, type3.36E−031.07400470Target Exon5.96E−031.07420357U94333Hs. 97199complement component C1q receptor3.40E−031.07424173AW138201Hs. 101064Homo sapiens cDNA FLJ12777 fis. clone NT1.18E−031.07440517AW139632Hs. 132246ESTs1.93E−041.07438357AI042101Hs. 294107ESTs8.89E−031.07428813AA436063Hs. 25734ESTs5.80E−031.07406279C18000033*: gi|5901944|ref|NP_008977.1|e9.43E−031.07402635KIAA0408 gene product9.81E−041.06417329AI190413Hs. 8373ESTs9.11E−101.06456059BE543127Hs. 336948Homo sapiens, clone IMAGE: 3530891, mRNA,1.83E−041.06401532C15001264*: gi|12737280|ref|XP_006682.2|5.46E−041.06403358NM_006898*: Homo sapiens homeo box D3 (HO1.30E−041.06441250AA926736Hs. 131338ESTs6.75E−031.06413772BE163499gb: QV3-HT0460-160200-092-d02 HT0460 Homo1.16E−031.06458522AW452054Hs. 161139ESTs2.12E−041.06406755N80129Hs. 199263metallothionein 1L2.56E−061.06438540AA810021Hs. 136906ESTs8.27E−051.06402517Target Exon8.49E−051.06422867L32137Hs. 1584cartilage oligomeric matrix protein (pse8.26E−031.06433299AA582324ESTs1.19E−041.06457165AL353972Hs. 202613ESTs5.47E−041.06440371BE268550Hs. 80449Homo sapiens, clone IMAGE: 3535294, mRNA,4.10E−031.06414205BE382438Homo sapiens, clone IMAGE: 3690478, mRNA,1.89E−031.06421453AA234652Hs. 104555neuropeptide FF-amide peptide precursor3.52E−041.06415515F11327Hs. 167406gb: HSC2VD101 normalized infant brain cDN1.44E−071.06441638AW293202Hs. 133451ESTs6.88E−031.06400576Target Exon1.45E−041.06422221AA306649Hs. 169370FYN oncogene related to SRC, FGR, YES8.73E−031.05440187AI814224Hs. 148565ESTs8.70E−031.05410137AI244459Hs. 110826trinucleotide repeat containing 95.49E−031.05436537AI201305Hs. 335027ESTs5.64E−031.05454397AW974648gb: EST386752 MAGE resequences, MAGM Homo3.26E−031.05432767NM_014114Hs. 278928PRO0097 protein7.72E−031.05456013T92048Hs. 324531gb: yd54g12.s1 Soares fetal liver spleen1.08E−041.05438233W52448Hs. 56147ESTs9.94E−031.05442400AW381148Hs. 1694072,3-bisphosphoglycerate mutase6.12E−031.05424648AA344576Hs. 17253gb: EST50478 Gall bladder I Homo sapiens2.96E−031.05404907NM_025213: Homo sapiens spectrin, beta, n9.51E−061.05409487H19886gb: yn57a05.r1 Soares adult brain N2b5HB51.22E−041.05422311AF073515Hs. 114948cytokine receptor-like factor 14.30E−041.05431151BE207083gb: ba10d10.y1 NIH_MGC_7 Homo sapiens cDN4.15E−031.05458891AI659166Hs. 207144ESTs1.35E−051.05452972M31732Hs. 31210B-cell CLL/lymphoma 35.22E−051.05456767AI086412Hs. 129064Homo sapiens chromosome 19, cosmid F22161.04E−041.05419017T83961gb: yd76c08.s1 Soares fetal liver spleen4.83E−051.05426738AA421097Hs. 291902ESTs7.01E−061.04414386X00442Hs. 75990haptoglobin1.19E−061.04436234AI809027ESTs1.15E−041.04437343AI521190Hs. 165983hypothetical C2H2 zinc finger protein FL1.58E−031.04413042BE061618gb: RC6-BT0252-151099-011-c05 BT0252 Homo4.40E−031.04400765Target Exon2.94E−051.04453989M63962Hs. 36992ATPase, H? exchanging, alpha polypeptide1.57E−031.04422743BE304678Hs. 119598ribosomal protein L35.39E−041.04454065BE394588gb: 601311808F1 NIH_MGC_44 Homo sapiens c5.26E−051.04405201Target Exon6.03E−031.04436221AK001781Hs. 296543Homo sapiens cDNA FLJ10919 fis, clone OV4.68E−031.04414376BE393856Hs. 66915ESTs, Weakly similar to 16.7 Kd protein [1.13E−031.04428633AW450428Hs. 112050ESTs1.15E−051.04433821AW182416ESTs1.96E−041.04448401AI498509ESTs3.15E−031.04408278AW876813phosphoglycerate dehydrogenase4.02E−051.04405282Target Exon2.01E−031.04439548AA086045Hs. 137313ESTs6.15E−041.03444788AI871122Hs. 202821ESTs3.94E−041.03430842AC002511Hs. 272485G protein-coupled receptor 418.52E−031.03434179AI743448Hs. 116177ESTs3.72E−031.03427827AA416577Hs. 189105ESTs, Weakly similar to NBR13 [H. sapiens8.89E−031.03412139BE044976gb: hn25b10.x1 NCI_CGAP_Thy7 Homo sapiens5.90E−031.03445500AW451938Hs. 257512ESTs4.34E−031.03452151AI190405Hs. 143127ESTs8.32E−031.03412474AI791451gb: ni50c09.y5 NCI_CGAP_Ov2 Homo sapiens1.42E−031.03407382AA503620gb: ne49b08.s1 NCI_CGAP_Co3 Homo sapiens5.88E−061.03413805AW945740Hs. 289293ESTs1.11E−031.03448020H06022Hs. 334916Homo sapiens, clone MGC: 17331, mRNA, com9.93E−031.03407586Z37544Hs. 37121phospholipase C, beta 3 (phosphatidylino1.14E−041.03438998AF075064gb: Homo sapiens full length insert cDNA2.30E−031.03402022Target Exon8.26E−041.03442321AF207664Hs. 8230a disintegrin-like and metalloprotease (1.86E−061.03459375BE251770gb: 601112470F1 NIH_MGC_16 Homo sapiens c3.01E−041.03418003AA976107Hs. 128691Homo sapiens mRNA for KIAA1762 protein,1.54E−031.03439694AA843915Hs. 54707ESTs3.55E−041.02458318BE177830gb: RC1-HT0598-120400-022-b08 HT0598 Homo7.76E−041.02435680H50946Hs. 284183Homo sapiens galectin-related inhibitor1.38E−051.02445179AI949743Hs. 224768ESTs4.44E−031.02455932BE158451gb: CM1-HT0390-301199-052-b01 HT0390 Homo2.79E−041.02420429AW293291Hs. 182382ESTs7.07E−031.02446185AI279191Hs. 149454ESTs, Weakly similar to DSR6_HUMAN DOWN3.70E−031.02410628AI131408Hs. 68756ESTs, Moderately similar to similar to s1.52E−051.02428739AA700158Hs. 301755Homo sapiens cDNA FLJ11465 fis, clone HE9.54E−031.02409651H96643Hs. 283565FOS-like antigen-14.45E−091.02445311AW027556Hs. 345522ESTs9.11E−031.02403579Target Exon4.78E−041.02403957Target Exon1.30E−041.02415471F09747Hs. 268707ESTs6.85E−041.02440763AB028988Hs. 7407KIAA1065 protein8.27E−041.01445474AI240014Hs. 259558ESTs5.32E−041.01408690AW864542gb: PM4-SN0016-120500-003-h02 SN0016 Homo1.89E−031.01442574AI932361Hs. 238039hypothetical protein FLJ110905.28E−041.01448778AF074913gb: Homo sapiens transcription factor Pax8.48E−031.01400425AY004252Hs. 287385PR domain containing 123.58E−061.01438326AW575901Hs. 123230ESTs, Weakly similar to Z195_HUMAN ZINC9.93E−041.01439698AW779654Hs. 55876ESTs3.98E−031.01419189T95862Hs. 1123186.2 kd protein5.70E−031.01436407T88803Hs. 237517ESTs, Weakly similar to TIM_HUMAN PROBAB3.93E−041.01414630BE410857Hs. 16064gb: 601301177F1 NIH_MGC_21 Homo sapiens c9.04E−031.01409294BE546175Hs. 71746hypothetical protein FLJ115832.83E−031.01450184W31096Hs. 237617Homo sapiens, clone IMAGE: 3447394, mRNA,8.64E−041.01457771AI814635Hs. 187117ESTs3.92E−031.01451595AW965569Hs. 20996ESTs4.46E−041.01416559AI039195Hs. 128060ESTs6.29E−031.01453680AL079647Hs. 14485Homo sapiens cDNA: FLJ23220 fis, clone A5.45E−031.01424365AI653164Hs. 128665ESTs, Moderately similar to I54374 gene4.16E−031.01419357AW955121Hs. 55148hypothetical protein FLJ144666.12E−041.00450991AI751020Hs. 313648gb: cnO7g05.x1 Normal Human Trabecular Bo5.11E−051.00419861AW081795Hs. 233465ESTs4.72E−031.00Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: T-test p-value R2: Difference of the average standardized value of Hep C− Liver vs. the average standardized value of Hep C+ Liver


[0369]

34







TABLE 12B








Pkey
CAT Number
Accession







454947
1083824_1
AW846590 AW846615 AW846584 AW846592 AW846621 AW846610


455765
6676_13
BG620787 AV761949 BG980132 AV761951 BE082222 BG979177 BF329571 BF908591 BE082279 BE081722 BG978604


455919
1527074_1
BE157195 BE157345 BE157130 BE157368 BE157136 BE157134 BE157202 BE157305 BE157109 BE157294




BE156971 BE156997 BE157374 BE156970 BE157366 BE157356 BE156973 BE157358 BE157300


412998
1343218_1
BE046254 BE046673 BE046253


417574
2134673_1
R00348 R09593


456636
433615_1
AW954166 AV723710 AW014769 AA916838 AW205448 AA476474 AI214918 BE550871 AI299143 AI685787




AI810480 AA476475 AI681494 AI378542 BF222633 AA769645 AA299751 AA299752


409840
915929_1
AW502122 AW501663 AW501720 AW502125


432745
112643_1
AA658826 AI821926 AI791191 AA635129 AA564492


454810
1073338_1
AW832915 AW832906 AW832788 AW832917 AW832776 AW832913


411772
300555_1
BE154090 AW861539 BF921665 BF350632 BF350631 AW904851 BE170301 BE154336 BE154275


407457
24680_1
AB044546 AJ242724 BF760529 BF946992 BG983676


450703
35938_2
AK056299 AI669104 AI378016 AI420515 AW297177 AI702739 AA889785 AA011202


436871
57685_1
AA070431 AA121992 AA076561 AA080879


459235
26808_3
AW814516 AW815927 AW814504 BF375203 AW814522 AW814521 AW814524 BF375206 AW814518 AW814517




AI940652 BF837881 AW751232 BF374342 AW176453 AW814505 BF886651 AW814525 BG001382 BE933380


426505
1139_4
BG177042 BE185582 BE185655 BE185657 AA380194


423053
367623_1
BE314223 AA320990 BE312679 BI054000 BI324838 AW057717


444163
682245_1
BG403189 AI148521 AI184746 AI126098 R05933 BI057330


440730
1648529_1
BE561722 BE268773 BE268956


447721
1889_2
BC013767 AL572931 BE742185 BI520113 AW959076 AI341487 AI623222 BM091074 AW593800 AI983635 AW275114




AI952164 BM091378 AA977038 AW513859 AI801910 AW273202 AW166266 AW337946 AI086791 BE907359




AW273147 AI453134 AA250733 AW072844 AI818468 AI561259 AW470887 AW300481 AW103087 AW175624




BE048584 BF063936 AI207341 AW193240 AW193322 AW264492




AI682412 AI631778 AI669677 AI128695 AA448630 AA456607 BF313680 BG898294 BI195544 BG421755




BI760100 BE383304 BF329916 BF526599




AA385255 BI520887 AA410939 AA448721 BF525380 BG423666 BI761786 BF944570


455973
1561647_1
BF352282 BE175424 BE175418 BE175383


454707
1067650_1
AW814808 BG999545 AW814989 AW814852


452621
2071061_1
AI910230 AI910262 AL134108 N44030


419555
252042_1
AA244401 AA244416


451402
1958047_1
AI793167 H39479


434646
15463_1
AF147445 AA130804 AA069114 AA069113


409795
MH905_27
AI498073 AI934808 AW374654 BI036066 BE709215 AA077985 BI831355




BF932450 BF770705 BF379220 AA077682




AA076814 AA076875 BI027970 AA077787 AA077311 BF811798 AW393752 BF327269 AA077305 AA078114




BF800885 BF942930 AW903223 BF916052




AW903170 AW903224 BF352664 BF379209


442793
417820_2
BG741247 BG741022 AI017798 AI953594 AW445065 AI245087


413537
1375441_1
BE146866 BE146865 BE146867


455968
1557068_1
BE168828 BE168823 BE168830 BE168820 BE168931 BE168826 BE168928


416648
1982787_1
R97488 H71377 R97368


458867
1246993_1
AW995393 AJ403118


425526
1076747_1
AW962995 AW955306 AA359933 AA358889 AW837746 BG961280




AW837697 AW837755


408099
7104_17
AW151646 AW151645 AW151637 BI562740


434884
10696_1
AF161340 AF150140 AV738842


438687
2575583_1
AI674070 AI239526 AI240515 AA814084


441184
1816784_1
BE715995 BE715973 AI204080 AA954474 AA922009


410312
1001291_1
AW851102 AW851181 AW850953 AW851110 AW629671


423103
879332_1
BE315237 AA322029


447135
579607_1
T58148 AW516579 AW059603


426254
7308_1
BC017081 AL539521 AL524509 AL556058 AL541690




AL543200 BF974751 BE514793 AW247083 BE183238 AA376427




AF202637 NM_022156 BI554151 AL559157 BE909859 AW009244




AW043786 AW273850 AI871111 AI889050 AL045428 AI884485 AI554001




AI375841 AI469097 BF741351 AW188439 AA410448 AW515248 BE301590




AW007777 AI148210 AI805423 BE784190 AV658045 AI093347 AI308976




AI249682 AI206484 AI493895 AA973765 F29582 AA335219 AA379270 F37119




AA026496 BE645159 AA617996 AI886986 BM144558 BC003659




BG739795 BE729530 BG334810 BE746857 BE390302 BM354208 BF757460




AA284639 AW967315 BE769162 W96068 BM477081 BG490980 BM013665




BE735761 BE257483 BE257427 BG255544 AI474585 AL569826 BG337562 BG491737




AL559158 BG822257 AL554642 AL570587 AA588594 AL041071




AA554020 AA287274 AA810799 AA729332 AA659019 BE439973 AA335218 AA639556




AA610680 R16774 H26778 AA026419 AA010840 BF830072




R50167 AL577377 AA622659 F25241 BF880480 AA872445 BE386621 AL571579


415160
1861867_1
T82802 R08505 D78670


416397
1969080_1
T91431 H80874 H53035


412371
1172992_1
AW946709 AW946621 AW946699 AW946695 AW946691




AW946697 AW946666


416323
1964997_1
H47929 N78108 N72630


412433
413465_1
AV698615 AA102400 AA327633 AA102401 AI970895


455663
1490406_1
BE065460 BE065619 BE065633 BE065626 BE065679 BE065617


433010
1234715_1
AW970018 BE843649 BE843644 AA573622 R08736 AA573669


422800
11320_9
BE545343 AW997954


414648
316607_1
BF126232 H54463 BF950132 H54381 BF944624 BE393262


437093
325853_1
BF955573 AA744334 AA745434 AA744302


445481
504944_1
AW003346 AI808038 AI671563 AI240190 AW661846 AI286080


410922
1064329_1
AW810845 AW810831 AW810661 AW810816 AW810772 AW810666




AW810865 AW810859 AW810670 AW810805 AW810856




AW810819 AW810852 AW810722 AW810699


412044
1149589_1
BE086167 AW887835 AW887682 AW887677 BE178621




AW887676 AW887674


448464
661708_1
AW196419 AI522053 AI650395


432909
137712_1
AA702596 AA570111 AI348435 AW192161


415597
1876403_1
T74345 F12588 Z44384


440075
1648556_1
BE559806 R12767 BE268806


441194
138512_1
BE275382 AA703515 BE166690 BG334067


432092
34124_1
AA583908


454537
15351_6
BG421219 BI488939 BE391114 BE391493 BG764533




BE276157 BE388289


446403
488811_1
BE549932 BE467906 BE326357 BG149226 AI298565




AW452904 AW449414 F04362


441662
2674073_1
AI807406 AI798919 AA948548


411154
1071475_1
AW819848 AW819850 AW819863


448544
1139239_1
BM476470 AW902443 AI535819


430725
1597397_1
AI478920 AI478907 AA485056


422579
15032_4
BG035571 BM457635 AA312626


432081
1237080_1
AA525888 AA525391 AA984238 AW972788 BE087083


453196
505145_1
AW003567 AI963955 AI990231


421798
3042_4
BC017829 AW276646 AI984209 AA663933 AA634104 AA551528




AA634041 AA298038 BG483990 T89297 BF853958 H64685




T90329 T60644 T57747 BF852694 T92529 BG482852 BF883064 BF883066 N74880




AA829796 N90716


454803
1072913_1
BI468492 AW862380 AW860148 AW821887 AW821863




AW821894 AW821870 AW862378 AW862351


413619
1524553_1
BE153524 BE153576 BE153583


428177
8737_7
AA779866 AA423967 AA423968


411288
1074988_1
AW835517 AW835513 AW835511


418551
2261897_1
AL564778 R99167 T99393 T75517


415449
1873127_1
H15034 T17195 F09069


457677
1205688_1
AI374612 AA628890


454908
1078884_1
AW840458 AW840400 AW840401 AW840535 AW840539




AW840532 AW840538


413737
1551611_1
BE160704 BE160849 BE160896 BF351011


454186
645362_1
BE141775 BE141030 BE141467 BE141520 BE141028 BE141492




BE141477 BE141460 AW177599 BE141456 BE141753




AW177597 AW177582 AW807582 AW177585 BE141761 AW177598 AW177579 AW177583




AW177587 BE141749 BE141489 BE141474 BE141512 BE141751




BE141024 AW177581 BE141750


413961
566812_1
BG251042 BE266372 BE207098


454598
1063474_1
BF374577 AW809840 AW809996 AW809798 AW809695 AW809646




AW809738 BF374582 AW809716 AW809826 AW809802




AW809747 AW810152


417313
1943_33
W01148 AA195602 N40632


410285
2930719_1
AA083790 AA083609 AA112048


408432
288076_1
AW811262 BF905430 BF908283 BF368183 BF907357 BF908452




BF908282 BG001786 BF908281 BF907042 BF908278 BF908277




BF908451 BF368225 BF379361 BF907348 BF908280 AW195262 R27868


449405
78886_1
AA203114 R00660 H83070 AA001350 H70366 R95157


431357
1235874_1
AW971393 AA503896 T81154 AA507148


428568
738084_1
BE259137 BE251523


415037
980243_1
AA159478 AW901089 AW593155 AA160437


440190
1030220_1
AW848781 AW848490 AW849062 AW752597 AW752699


458146
114488_2
AW589833 AI652176 AI216328 AI286094


409975
926611_1
AW839324 AW516213 BE142635


419299
36328_1
BM477587 BE675426 AA827059 AI597639 AI571409 AI719948




AI311085 AA953361 AI498787 AI364049 AI311084 BF871020




BF549868 AI356384 AA236660


400111
24179_2
NM_006156 D23662 BF038671 BI670321 BI603145 BI666956 BG716628 BG707476




BG768814 BE312007 BF125930




BF037916 BG942671 AI752472 AW009362 BE379126 BI198555 BF126026 N28289 BE388301 BG327102 AI571450




BF038400 AI884649 AI718962 AI742314




AA977058 AI150699 BG944784 AA187402 BG283893 AV712007 W01301 BG774109 W77840 C15672 BI670016




AI752473 AA484409 C14921 N41745 C15220




F30164 AA133181 BF768974 H30334 AA034968 AA384232 AA353297 AW407023 AA337516 F36177 AA374444




AA402758 AI141545 BI021470 AA973914


436375
46760_1
AJ227870 AW798823 AW798704


409818
914614_1
AW502932 AW500969 AW501134 AW501533


453741
1031156_1
AL120304 AW855522 AW753631


439665
24497_1
AF086498 AW955697 W93979 AI936062 AW268568 AA364461 W93980 BI914847 BI523483


455977
1562520_1
BE176686 BE176477 BE176484 BE176679


457424
117833_1
BM041161 BM040921 BM040887 AW876082 AA513157 BM041809 BM041314 AA747408




AA747397 AA736702 AA745146 AA648638


430204
MH1094_26
AI821606 AI826629 AI304327 AI660560 AW050605 AI732165 AW009962 AI262416




AI695625 AA469031 AI791844 AA573825 AA618335


455638
1489140_1
BE142908 BE063665


450799
819959_1
W31274 AW407504 AI738877


444207
9172_3
BE739425 AA514221 AA865491 AI828293 AA470456 AI276739 AA169357 BE932464 AA514889




AW819039 AW819083 BE843048 AI432496




AI470335 AI247243 BG533994 AA513783 AI887309 AA528036 AW972006 AW873028 AI924914 AI818810




AW152378 AW084946 AI521413




AI669583 BE932521 AI581370 BE180238 AW089750 AW771461 AW089714 AI590949 AI819148 AA731056




BF815234 BF911506 AA235803




AA485373 AI735658 AW393133 AW073080 AI707637 BF353320 BE843111 AW819036 AW393135 BG697291




AV648670 AV654332 AV687530




BG566964 AI807430 AI676072 AA837010 AI452482 AI625817 AW241750 BE048616 AI290928 AI680714 AA485530




BE175687 AV648513




AW130312 AI000556 AA632893 BE674169 BF001208 AA948166 BE175650 AA524664 AA490345 AI244948




AA602956 AA483492 AA918178




AW802049 BG675859 AV658871 BG678060 AI565004 AW819026 BE843092 AV686437 AV723049 BG616948




AI911647 AI743490 AI091096




BE857251 AI962074 AA049027 AW769317 AA343477 AA640112 BF876213 R82948 H26425 H82876 BE843095




BE843140 BG536641 BG617830




AA235802 BE774985 BE006682 BF342375 AA903144 BF338083 BF984258 AV657996 AI749532 BE768614




BE857252 BE932516 BE768573




AV657993 AV657777 AV752631 BE774974 T55847 BF095761 BF911511 BE710793 BE180119 BG617338




H45942 T55897 AV657718 BG563497


455194
1107901_1
AW947513 AW864536 AW864318


413309
455217_1
BF315003 BE312608 R10565


416115
863707_2
BE147652 BG990288


437216
645_11
R61679 AA746905 H13364 BF185622 N29108


438327
18001_1
NM_033183 NM_033043 NM_000737 BC006290 J00117




BG479175 AU138071 AI188721 AI188454 AI188947




AI188781 AI188729 AI200658 AI148857 AI188639 AI209155 AI189616 AI189595 AI189275 AI192447 AI188604




AI200457 AI188391 AI184224 AI190013 AI189641




AI207360 AI148695 AI148590 AI149163 BF589174 AI188348 AI189842 AI188498 AI148904 AI138197 AI417614




AI126101 AI160579 AI160936 AI160814




AI123896 AI189442 AI149591 AI131286 AI138448 AI149559 AI128296 AI168482 AA330755 NM_033142




AI192459 AI741512 AI206390 AI186215




AI148647 AI189807 AI183280 AI200559 AI188964 AI188303 AI200022 AI186353 AI219044 AI200270 AI189555




BG200016 BG210411 AI186465




AI186218 AI189968 AI149039 AI273580 AI291937 AI276216 AI188689 AI157454 AI200375 AI184348 AI221605




AI871881 BF432300 AI128424




AI868741 AI219133 H93668 AW451899 H95381 C18834 AA331267 AA330978 AL548158 AI149571 AI149072




AU155932 R68113 R26086 AA330414




AL551303 AI188830 AI188824 AI206355 AI453626 AI189364 AI160692 AI189068 AI219266 T49171 AA330939




AI130720 AI151301 AI199943




AI221019 AI186330 AI149467 AI198460 AI220923 AI161082 AI654493 AI184784 AI219589 AA232905 AI160705




AI189453 T47334 N30758 K03181




AL551349 BG434672 N40745 N41758 T83001 R71610 AA331230 N39958 AA330844 BE901661 AU135260




H86992 H87407 AA330968 AA330717




AA330761 AU139360 N42631 AA333923 AA330974 BG435249 AA331021 AA331049 N41851 AA330831 R23289




H87658 AA331043 AA330803




AL548120 BG479085 AA330609 AA331023 AA331039 BE733206 BE732062 W76381 R63351 BF060995 N56715




N56709 N40038 T52077 N41710




H94535 BI088367 N41834 H94543 AA330643 N47829 R23494 BG434117 N42013 R68922 AA331012 N40479




D78974 R67480 H56737 N40793




N41357 N41591 N41596 H93655 R68162 H87630 T85052 R01541 AI219422 AI221014 AI219055 AI221580 AI220780




T28278 AI219166 AI220865




N27381 N27073 N41361 N42190 N57328 AI149426 N57248 H86986 W71989 N30684 N30822 T85053 AI188728




AI168533 H95374 H94451 T49170




BF369834 N29831 N31955 N30313 N32233 AI221552 AI126906 AA400910 T90191 R23214 AI138431 AI128407




AI188492 AI186418 BF109879




N26397 AI188872 AI149447 N30216 AI431595 AI219009 N30817 N30833 AI148774 AI188715 AI149156 BG774563




H95176 H94991 H94347




N32759 N32604 H12587 H93656 H94015 N29701 N30276 N27302 BF999045 N29730 R68815 H87631 H86993




R63352 H95135 H94446 H87464




H95207 N31616 NM_000894 AV751658 AV752236 AI051683 AV748886 T29543 AA371971 AA371978




AA371346 AV753384 AA372026 AA371909




AV745740 AV746068 AV751144 AV747923 AV745447 AV748231 AV745712 AA063496 N56646 H87574 AW951441


414182
2917943_1
AA136321 AA136301 AI381776


409382
110743_1
AA071477 AA071244


452947
625171_1
AI932362 AW130413


411507
1088866_1
AW850140 AW850195 AW850192


412419
1175957_1
AW948630 AW948616 AW948604 AW948623 AW948627 AW948611 AW948605




AW948610 AW948626 AW948634




AW948631 AW948615 AW948607 AW948602 AW948633 AW948628


428680
41659_1
AB075857 U69199 AL554057 BE550443 AI125387 AI125388 AI372992 AI686618 AA583075




AW079720 AI948894 AI342763




AI982591 AW779115 AI560632 BF001153 AI623930 AA447536 BG911172 AA480680 BI197703 BE294318 AL530842




AL562327 AA448518




AA432018 BE264771 BE259722 BF930927


430820
32425_1
AF194815 AF194816


415016
1806690_1
N62934 BE858324 N46417 N46363 N46427 N46358 D19793 H99021


459233
3170768_1
AI939966 AI939976 AI939951 AI939981 AI939959 AI939988


424324
808543_1
AW954536 AA338802 BE160193 AA346316


422388
870372_−1
BE061034


424397
893246_1
AI950320 AA340023


418784
2306231_1
T41418 T41379 T41320


412682
1242945_1
AW983772 AW983837 AW983730 AW983769 AW983836 AW983835


413772
1553630_1
BE163499 BE163572 BE163580 BE163565 BE163503 BE163510


433299
1752_1
AK056027 AL120636 AA582324 AA582305 AI459497 BI047007 AL589306 AI688987




AI922469 AA350721 AI085972




AF131844 AW954598 AW957578 AA350710 AI884831 R37119 AA666294 AA350709 BF724097 AA203665




AI089250 AA708285 BF831652




AW104744 AW104745 AW129091 AV724110 AW805934 AV682207 AA563965 W93840 AW104743 AW009432




AI085993 BF839379 T79879




BC019656 AA975816 AI953836 BE350274 AW840298 BI043880 BG913327 AW839960 T07306 R53951




AI299256 AI961918 AI190874 AA724491




F04512 BG997879 R08567 BE810546


414205
1266364_1
BF306238 BE295439 BE382708 BE383262 BF315437 BI199567 BE382438


454397
118552_1
AW974648 AA649671 AA652153 BF875948 AA078582


409487
815197_1
H19886 T10231 AW402806


431151
1570517_2
BE207083


419017
2348209_1
T83961 T79425 T85415 T79511


436234
141336_1
AW269942 AI809027 AI799097 AA707010


413042
1487648_1
BE061618 BE061640 BE061619


454065
517162_1
BE394588 AW024754 BE183167 BE183166 BE378353


433821
72553_2
AK054648 AW182416 AA609856 AA918195 AA634398 AA927922 AA868718




AI290470 AI338870 Z25302 T30841




T30825 F29302 AA436128 BF095986 BI829584 AA853991 AA778707


448401
507788_1
AW007014 AI498509 AW156947 AI933042 AW370727 AW370779 AW370731




AW370726 AW370764


408278
MH337_68
BG422281 BG422108 AW177973 BG750536 AW876813 AW876814


412139
1154826_1
AW895327 AW895462 BE044976


412474
1022404_1
BE296601 BG829182 AI791451 BE019234 AI791288 AA111939 BG954837


438998
52228_1
AF075064 R89255 R89256


459375
619648_−3
BE251770


458318
1561764_1
BE177830 AF114068 BE175531 BE175603 BE175601 BE177658


455932
1528183_1
BE158451 BE158453 BE158585 BE158584 BE158454 BE158465 BE158464


408690
105725_1
BG563152 BF846777 BF849354 BF849359 BF846636 BF849201 BF849356




C16931 AA056717 AW864542 AW882724




AA056567


448778
7800_1
AW505435 U62539






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0370]

35








TABLE 12C








Pkey
Ref
Strand
Nt_position







404473
8079921
Plus
22639-22773


402845
9369286
Plus
160451-160617, 160788-161009


400692
8118799
Plus
37906-38256


404224
6002294
Minus
80109-80957


405800
2791346
Plus
19271-19813


401149
7229925
Plus
73117-74019


405334
3135285
Plus
139386-139856


404958
7407941
Minus
2731-4531


405058
7655685
Plus
150740-151556


400663
8118474
Plus
88985-89281


403686
7387348
Minus
66625-68364


402399
1905915
Minus
24502-24666, 24986-25102


401624
8575907
Plus
168318-168444, 172964-173647


401706
4826475
Minus
14767-15317


405263
7329364
Minus
104082-104796


403796
8099896
Minus
75073-77664


405639
5091650
Plus
211184-211350


403794
8096910
Plus
163292-163884


403772
7770492
Plus
117668-117899


405126
8316124
Plus
45650-45911


400729
6705887
Plus
117048-118826


403243
7637828
Minus
76343-76585


402690
8348058
Plus
13368-13998


405677
4567140
Plus
31045-31445, 31688-31885


400522
9796828
Plus
40475-40792, 41517-41813,





42598-42894, 4325


406140
9168231
Minus
49887-50219


401371
9650602
Plus
80901-81283


406357
9256093
Minus
77181-77415


401554
8099284
Minus
153483-153612


405137
8570507
Plus
158969-159423


404843
7940338
Plus
22556-23222


403613
8493504
Plus
81290-81465


402534
9801061
Plus
58989-59457


401629
8575965
Minus
169336-169788


404731
7230299
Minus
168609-168781, 182951-183081


404219
1841541
Plus
50866-51013, 51517-51614,





51788-52030


405913
7712139
Minus
7484-7678


403180
7523976
Minus
63603-63759


401595
3293210
Plus
58192-58362


406089
9123919
Plus
73784-74296


401899
7230209
Minus
155620-155815


402137
7704985
Plus
11434-11799


404701
9800167
Minus
60061-60180


403474
9957921
Plus
55961-56511


405762
5931935
Plus
160502-161110


405590
6960456
Plus
90492-90818


404825
6478944
Plus
210382-210494


402638
9958128
Minus
82748-83226


406458
9756020
Plus
145874-146911


404923
7341893
Plus
98418-100223


403209
7630841
Minus
60664-60810, 85748-85939


400635
8567750
Minus
102800-102932, 107482-107689


402349
8191067
Minus
6817-6994, 7340-7680


402951
9408717
Plus
73252-73329, 73718-73877,





76217-76299, 7819


402447
9796640
Plus
47605-47729, 51696-51821,





52070-52257, 5330


403545
8078400
Plus
25293-25640


402561
9864675
Plus
72967-73163


401516
7637251
Plus
62335-62502


405691
4508112
Plus
171350-171739


404126
9796876
Plus
48919-49155


404046
3688074
Minus
2-773


402991
7631064
Minus
161294-161579


402320
7630359
Minus
46058-46153, 46446-46572


403227
7637789
Plus
24457-24771


401265
9797154
Plus
135413-135573


404247
7406725
Minus
83949-84214, 84312-84415,





84499-84677, 8487


404247
7406725
Minus
83949-84214, 84312-84415,





84499-84677, 8487


406370
9256130
Plus
125320-125482


404075
7652011
Plus
53692-53938


401703
4826475
Plus
135-1229


402252
3548788
Plus
6848-7049


402316
7527774
Minus
10751-10919, 18817-19052,





22131-22328


400818
8569994
Plus
172644-172765, 173085-173200


404900
7331453
Plus
22032-22219


400877
9857603
Minus
156938-157254


402610
9926549
Minus
22955-23124


404769
8099713
Minus
175801-176823


402863
2956660
Minus
29506-29693


402012
7407997
Minus
111771-111909, 112107-112226,





112519-11269


402411
9796294
Minus
109449-109598, 111328-111478


403567
8101141
Plus
35349-35614


401831
6850361
Minus
107181-108077


403248
7656833
Minus
167439-167606


402190
8576067
Minus
76488-76959


402878
9908870
Minus
56133-56522


401008
8117391
Minus
81421-81551, 82364-82512,





82862-82938


401037
7232177
Minus
3364-3686


404187
4481839
Plus
7644-7991


402869
6434643
Minus
138639-139335


404504
8151759
Plus
83050-83765


405593
6960456
Plus
157746-158046, 160760-160939


402255
3510233
Plus
9421-9621


406146
8746393
Minus
28514-29086


403722
7528070
Minus
117448-117615, 120977-121188


404805
4165236
Minus
37584-38304


403830
9887814
Minus
20687-20893


404909
7331453
Minus
123713-123909, 124327-124411,





124511-12462


401450
4680764
Minus
59252-59334, 59945-60427


405316
3638954
Plus
76171-76417, 76692-76844


404364
9964977
Minus
32986-33202


406138
9166422
Plus
42227-42753


402338
6957691
Minus
36915-37250


404244
5672609
Minus
98173-98517


402124
4033680
Plus
164206-164459


400470
9930824
Minus
156245-157227


406279
7547249
Plus
203752-204426


402635
9958100
Minus
167621-168379


401532
7798785
Plus
124414-124950, 125050-125418


403358
8570101
Minus
106778-107580


402517
9798106
Plus
17569-17721


400576
7923997
Minus
91711-91954


404907
7331453
Minus
102880-103828


400765
8131622
Plus
35000-35306


405201
7230116
Plus
36934-37314


405282
3810573
Minus
10482-10689


402022
7139714
Plus
165595-165748


403579
8101179
Minus
36167-36365


403957
8076835
Minus
81649-81754






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0371] Table 13A lists about 102 genes up-regulated in Hepatitis C positive liver tissues from patients that are non-responsive to pegylated-interferon-alpha plus ribavirin treatment (non-responders) compared to Hepatitis C positive liver tissues from patients that are responsive to the treatment (responders). In both cases, the liver biopsies were obtained prior to treatment. These 102 genes have potential to be diagnostics and/or prognostic markers for determining the responsiveness of Hepatitis C infected liver tissues to pegylated-interferon-alpha plus ribavirin treatment. They may also provide clinical information on Hepatitis C infection and pathology. They may also be potential targets for therapeutic drugs and/or treatments. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the t-test p-value between the non-responders liver tissues group and the responders liver tissues group was less or equal to 0.01, and that the differences between the average “standardized values” of the different non-responders liver tissues was equal to or above 1.0 more than the average standardized values of the different responders liver tissues. The “standardized values” of the Hepatitis C liver tissues were derived by subtracting the median of the several different Hepatitis C negative liver tissue values from each probeset value, then divided by the interquantile range (IQR) of the same several Hepatitis C negative liver tissue values.
36TABLE 13APkeyExAccnUniGeneUnigene TitleR1R2440495AA887212Hs. 14161hypothetical protein DKFZp434l19304.81E−034.71439242BE167324Hs. 53996ESTs, Weakly similar to ZN42_HUMAN ZINC1.71E−034.63437855AA776740ESTs2.88E−034.12413321BE082938gb: RC2-BT0642-290200-016-b02 BT0642 Homo9.87E−033.29453696AI989482Hs. 146286kinesin family member 13A7.86E−033.05452455N25153ESTs, Weakly similar to AF174605 1 F-box5.32E−033.04455348AW901517gb: RC5-NN1013-310300-021-C03 NN1013 Homo3.47E−033.00459577AA019148gb: ze56e02.r1 Soares retina N2b4HR Homo5.46E−042.90446633U85996Hs. 157142ESTs, Weakly similar to I38022 hypotheti6.87E−032.90434848BE256304Hs. 32148AD-015 protein2.06E−042.78452941AL110347Hs. 31074N-sulfoglucosamine sulfohydrolase (sulfa2.47E−032.76407544Y10206gb: H. sapiens mRNA for CD64 protein.2.28E−032.70450578AI971773Hs. 232268ESTs3.64E−032.68439774AL360257Hs. 213493Homo sapiens mRNA full length insert cDN4.81E−032.66436427AI344378Hs. 143399ESTs4.46E−032.60413348BE086846gb: QV1-BT0678-300400-182-b06 BT0678 Homo2.15E−032.58415210Z25274Hs. 154706hypothetical protein FLJ149178.96E−032.49403512C3000579*: gi|12643308|sp|Q9Y4K1|AIM1_HUM8.08E−032.49425225NM_003450Hs. 155204zinc finger protein 1746.11E−032.49422258AI910976gb: wd22a06.x1 Soares_NFL_T_GBC_S1 Homo s5.28E−032.46420400AI337097Hs. 156902ESTs5.73E−032.37411729AW861879gb: CM0-CT0341-260100-160-h12 CT0341 Homo2.55E−032.35443933AI091631Hs. 203845two pore potassium channel KT3.32.27E−032.30449137AW134478Hs. 196033ESTs8.66E−042.28431498AK001777Hs. 258551aspartyl aminopeptidase4.39E−032.28444811AW137791Hs. 148419ESTs1.97E−032.28457365AA577297Hs. 303249EST4.58E−032.27409198L19778Hs. 51011H2A histone family, member P1.64E−032.19430144AI732722Hs. 187694ERGL protein; ERGIC-53-like protein3.29E−032.16420803M91556Hs. 99945sodium channel, voltage-gated, type VI,6.76E−032.16411504R90961Hs. 164584ESTs9.64E−032.07428291AA534009Hs. 183487interferon stimulated gene (20 kD)2.28E−032.02422211R84341Hs. 293845Homo sapiens, clone IMAGE: 3502329, mRNA,6.74E−032.00453746AL120611Hs. 107924gb: DKFZp761H119_r1 761 (synonym: hamy2)1.78E−031.99454278AF217525Hs. 49002Down syndrome cell adhesion molecule1.53E−031.96447281AA017018Hs. 18021hypothetical protein FLJ204461.41E−031.94452399BE513301Hs. 29344hypothetical protein, clone 247511.86E−031.94426150NM_003658Hs. 167218BarH-like homeobox 26.19E−031.93406773AA812424Hs. 76067heat shock 27 kD protein 11.01E−031.93430259BE550182Hs. 127826RalGEF-like protein 3, mouse homolog4.72E−041.92431368AA760776ESTs1.90E−031.91413201BE275378Hs. 13972hypothetical protein MGC129726.19E−031.91408893AW605335Hs. 288826Homo sapiens cDNA FLJ12263 fis, clone MA8.42E−031.90454521AW803516gb: IL2-UM0081-230300-053-B12 UM0081 Homo6.83E−031.89405419CX001144*: gi|7242973|dbj|BAA92547.1|(AB5.89E−031.88403005C21000027*: gi|1817556|dbj|BAA13672.1|(D3.44E−031.84454282AW296422gb: UI-H-BW0-aio-h-05-0-UI.s1 NCI_CGAP_Su7.45E−031.84449381AW388688Hs. 288217hypothetical protein MGC29417.54E−031.83443305AI050693Hs. 133318ESTs9.26E−031.81455154AW859359gb: MR1-CT0353-150300-102-c02 CT0353 Homo8.62E−031.79408172W02488Hs. 46039phosphoglycerate mutase 2 (muscle)9.27E−031.78452711AW967047Hs. 293224ESTs, Weakly similar to T00375 hypotheti1.61E−031.70448279BE250564Hs. 283655lysophospholipase II9.00E−031.67408771AW732573Hs. 47584potassium voltage-gated channel, delayed3.00E−031.62445909BE262656Hs. 32603hypothetical protein MGC3279 similar to6.81E−031.61445058AA234031Hs. 326104putative mitochondrial solute carrier8.61E−031.60442620C00138Hs. 8535Homo sapiens mRNA for KIAA1668 protein,8.16E−031.59431369BE184455Hs. 251754secretory leukocyte protease inhibitor (1.85E−031.58441307AW071696Hs. 209065hypothetical protein FLJ142251.73E−041.56435012AA768359Hs. 149452ESTs7.59E−031.55447606AI588954Hs. 170995ESTs7.61E−031.55432911AW807634Hs. 279799putative zinc finger protein NY-REN-34 a9.38E−031.54450812AB002360Hs. 25515MCF.2 cell line derived transforming seq2.25E−031.52441164AB023180Hs. 7724KIAA0963 protein7.60E−031.52455749BE075035gb: PM3-BT0584-260300-002-g05 BT0584 Homo2.33E−031.51412732AW993300gb: RC2-BN0033-180200-015-g06 BN0033 Homo4.33E−031.49414056AI187349Hs. 17681ESTs6.51E−031.49458765AI419235Hs. 344456gb: tf21d02.x1 NCI_CGAP_Brn23 Homo sapien2.19E−031.44407496U20648gb: Human zinc finger protein (ZNF154) mR6.69E−031.42434415BE177494gb: RC6-HT0596-270300-011-C05 HT0596 Homo6.67E−031.39407233X16354Hs. 50964carcinoembryonic antigen-related cell ad8.97E−031.38410020T86315Hs. 728ribonuclease, RNase A family, 2 (liver,4.92E−031.37454303AW857169gb: RC1-CT0302-110500-018-f10 CT0302 Homo3.89E−031.34401411ENSP00000247172*: HYPOTHETICAL 126.2 kDa5.91E−031.33444754T83911transmembrane 4 superfamily member 46.61E−041.32446411AI298828Hs. 153439ESTs1.63E−031.30428407NM_003963Hs. 184194Transmembrane 4 superfamily member 55.64E−041.30452910AI927371Hs. 288839hypothetical protein FLJ121789.89E−031.29435791AA243086Hs. 25204chondroitin 4-O-sulfotransferase 24.10E−031.29441504BE159181Hs. 168232hypothetical protein FLJ138555.78E−031.29456477BE550252Hs. 1295calcium channel, voltage-dependent, alph9.15E−031.28446388AA292979Hs. 7788NPD007 protein4.50E−031.27418863AL135743Hs. 25566ESTs, Weakly similar to 2004399A chromos8.80E−031.24406684X16354Hs. 50964carcinoembryonic antigen-related cell ad9.58E−041.24414784NM_000344Hs. 288986survival of motor neuron 1, telomeric7.19E−031.24425429U18009Hs. 157236membrane protein of cholinergic synaptic8.57E−031.22441252AW360901hypothetical protein MGC43996.93E−031.21448222AI648587Hs. 20725Mov10 (Moloney leukemia virus 10, mouse)4.64E−031.21414395BE304888Hs. 279834EST6.16E−031.20441244BE612935Hs. 184052PP1201 protein2.70E−031.19420886AA805453ESTs, Weakly similar to T29012 hypotheti9.38E−031.18444972AW195642Hs. 148901ESTs7.68E−031.18417418NM_002468Hs. 82116myeloid differentiation primary response9.64E−031.18427672AA356615Hs. 336916death-associated protein 61.92E−041.17451025AW028689Hs. 301985ESTs9.53E−031.16407195C21124gb: HUMGS0002072 Human adult (K. Okubo) Ho1.84E−031.14437226AA432308Homo sapiens mRNA; cDNA DKFZp434M0420 (f5.73E−031.13407465AJ401466gb: Homo sapiens mRNA for high affinity c2.51E−031.12444751AI207406Hs. 11866translocase of inner mitochondrial membr8.36E−031.12429396AW954598Homo sapiens clone 25015 mRNA sequence5.46E−031.06457097AB037727Hs. 334479hypothetical protein DKFZp586I0219.69E−031.05440464AI917706Hs. 129997ESTs7.61E−031.02Pkey: Unique Eos probeset identifier number ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: T-test p-value R2: Difference of the average standardized value of non-responders vs. the average standardized value of responders


[0372]

37







TABLE 13B








Pkey
CAT Number
Accession







437855
36765_2
AK056396 AI800037 AA777098 BF939153 AI621113 AA776740




BF446127 AW295790 AA769865 AI690256 N32072 H55081 AL044298 AI286018




BI044678 N45384


413321
1501922_1
BE083171 BE082893 BE082938


452455
928588_1
BE877195 BG988071 AI902576 N25153 AW518714 N25154


455348
1159211_1
AW901523 AW901517 BF363877 BF363878 AW901521 AW901547


459577
86256_1
W31316 AA019148 BF921026 BF921163


413348
1508017_1
BE086846 BE086726 BE086733 BE086849 BE086683


422258
868626_1
AW957794 AW957873 AA307574 AI910976 AA481204


411729
1099453_1
AW861879 AW861948 AW858447 AW861873 AW858418 AW861871


431368
331947_1
AW969020 AA760776 AA504117 AA731957 AA504375 BF962819


454521
1058686_1
BE154783 AW803516 AW803639


454282
725499 _1
H72616 H63825 AW296422


455154
1100782_1
AW859359 AW859373 AW859358 AW859368 AW859363 AW859370 AW859347


455749
1497012_1
BE075035 BE074999 BE075006 BE075008 BE075005 BE075032 BE075037


412732
1245294_1
AW993300 R22345 N23107


434415
110905_1
BE177494 AW276909 AA632849


454303
306545_1
AW857169 BF929104 AW857162 BE153976 BE141977 AW352163 BE141954


444754
2600_1
AK055577 U31449 NM_004617 BC001386 BE617218 BE868856 BM264336




BG385990 BM353313 BI439041 BM272005 BM314705 BG616897




AA345452 BM314731 AA345379 AA344984 BG191629 BF002707 BE138874 AI676255 AI675920 BM264034




BI438713 BM314426 AW471424




BF063338 BM311530 AW518986 BM314400 AI572072 AI337361 AW013983 AI569109 AW338459




AA452917 AI572053 AI886493 R07511




AA506545 AA480323 AA908761 AI921215 R11516 AI583063 AI584071 AW339205 AI640782 R85697




AI784149 AI584060 AI566443 AI982840




BI439748 H78445 H94341 BG210200 BI466960 BG197730 H59265 BG821834 AW951290 R96709 H90091




T83911 T68523 R07564


441252
122_1
NM_032315 BC004991 BM468629 AL583162 BE741793 BE303031 BE244077




BE302759 AL583161 AL572691 AI804708 AI129827 AW872388




AI653103 AI151487 BE504355 AI671476 AW770976 AI206149 AI678224 BE468167 AI201164 AI200893




AA574128 AI991968 AW194793




AA426113 AI220474 AI201028 AA757281 AA844723 AA398466 AA484977 BF059403 AI470557 AA435830




AW016602 AI915990 BF356355




AL569855 AW978643 AW242882 AI823516 AW235374 BF059684 C20622 T66303 AI912746 AW339765




AA968541 AL526958 BF433829




AA628313 AW578403 AI909734 N75265 AW274422 W02124 BG474952


420886
56595_1
AK057268 AA281379 BI856491 AA805453 AA281414 BF373287


407195
1786254_1
AA569403 C21124


437226
2332_1
AL117642 BF056754 AI952151 AI953773 AL045835 AI041069 BF765693 BF765688




BF763048 BG682692 AW967083 BM271900 AV704704




AL040396 AI627368 AW514803 AI761270 AI015622 AI862541 AW197157 AI697779 AI568646 AI200936




BE695042 AI366513 BE711314




BE711324 BE047438 AW474529 AI421029 AL046814 AA400447 BF941647 AI143869 AW591727 BE695050




BF887502 AW963918 BF001425




AI340187 AW006934 AW468251 AW467398 AW516879 BF871799 AI816703 AI223153 BM264535




AI624845 BE711307 AW514703 AW264118




AW474488 BM263438 AW204628 BE711312 BE711330 AI718586 AI247201 BE711341 BF593534 AA626326




AA747785 AA782029 AI341349




AI921814 AW613873 BF332890 BE244575 BE694998 BF197632 AA609664 AW235441 BE042387




AA704683 AA758933 AI970214 BI025187




AA432308 BF871801 AW008470 BF765466 BE711329 BE711328 BF765463 BF765739 AW129408




BF765015 BF764200 AL042362 H58451




T86447 AA873427 AA570077 AW771950 AA400603 N69252 H16763 T65234 AA992089 AA836232




AA813701 AA026623 W80716 AA861629




N54181 N54185 AI015075 AA236563 R54957


407465
303_1
AB043997 NM_021815 AJ401466 AF276871 AV709773 AA364959




AA363955 AA364965


429396
1752_1
AK056027 AL120636 AA582324 AA582305 AI459497 BI047007 AL589306 AI688987




AI922469 AA350721 AI085972 AF131844 AW954598




AW957578 AA350710 AI884831 R37119 AA666294 AA350709 BF724097 AA203665 AI089250 AA708285




BF831652 AW104744 AW104745




AW129091 AV724110 AW805934 AV682207 AA563965 W93840 AW104743 AW009432 AI085993 BF839379




T79879 BC019656 AA975816




AI953836 BE350274 AW840298 BI043880 BG913327 AW839960 T07306 R53951 AI299256 AI961918




AI190874 AA724491 F04512 BG997879




R08567 BE810546






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0373]

38








TABLE 13C








Pkey
Ref
Strand
Nt_position







403512
7656757
Minus
114487-114610


405419
4753290
Minus
60924-61120, 61641-61773


403005
5791501
Minus
16945-17053, 20018-20403


401411
7799787
Minus
144144-144329






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0374] Table 14A lists about 147 genes up-regulated in Hepatitis C positive liver tissues from patients that are responsive to pegylated-interferon-alpha plus ribavirin treatment (responders) compared to Hepatitis C positive liver tissues from patients that are not responsive to the treatment (non-responders). In both cases, the liver biopsies were obtained prior to treatment. These 147 genes have the potential to be diagnostics and/or prognostic markers for determining the responsiveness of Hepatitis C infected liver tissues to pegylated-interferon-alpha plus ribavirin treatment They may also provide clinical information on Hepatitis C infection and pathology. These were selected from 59680 probesets on the Affymetrix/Eos Hu03 GeneChip array such that the t-test p-value between the non-responders liver tissues group and the responders liver tissues group was less or equal to 0.01, and that the differences between the average “standardized values” of the several different responders liver tissues was equal to or above 1.0 more than the average standardized values of the several different non-responders liver tissues. The “standardized values” of the Hepatitis C liver tissues were derived by subtracting the median of the several different Hepatitis C negative liver tissue values from each probeset value, then divided by the interquantile range (IQR) of the same several Hepatitis C negative liver tissue values.
39TABLE 14APkeyExAccnUnigeneIDUnigene TitleR1R2413278BE563085Hs. 833interferon-stimulated protein, 15 kDa2.39E−048.04402399C19001025*: gi|11275298|dbj|BAB18302.1|(9.60E−034.25446783AW138343Hs. 141867ESTs2.95E−034.19422596AF063611Hs. 1186332′-5′-oligoadenylate synthetase-like5.19E−034.03433364AI075407Hs. 296083ESTs, Moderately similar to I54374 gene6.90E−033.97447567AW474513Hs. 224397ESTs, Weakly similar to I38931 Wiskott-A6.87E−033.89432680T47364Hs. 278613interferon, alpha-inducible protein 274.46E−033.28457974AW842353Hs. 321717ESTs, Weakly similar to S22765 heterogen9.02E−032.76448436AI520706Hs. 171012hypothetical protein FLJ223493.22E−032.71405481Target Exon7.36E−032.65415682AI347128Hs. 191870ESTs6.94E−032.64444534AW271626Hs. 42294ESTs3.28E−032.62417199H48304gb: yq77c01.r1 Soares fetal liver spleen2.23E−032.50440798AB020648Hs. 7426KIAA0841 protein1.00E−032.40458492AI143655ESTs8.29E−032.27453989M63962Hs. 36992ATPase, H? exchanging, alpha polypeptide1.16E−032.25409703NM_006187Hs. 560092′-5′-oligoadenylate synthetase 3 (100 k5.99E−032.22412003R11775ESTs, Weakly similar to Z195_HUMAN ZINC7.01E−032.20400423AF264765Target7.03E−032.16409665NM_006731Hs. 55777Fukuyama type congenital muscular dystro8.24E−032.12438146Z36842Hs. 57548ESTs9.92E−032.10401191crystallin, beta A16.98E−032.06420875AA782222Hs. 293224ESTs, Weakly similar to ALU1_HUMAN ALU S5.64E−032.06423729R01566Hs. 5461ESTs1.99E−032.04400301X03635Hs. 1657estrogen receptor 12.35E−032.03402885Target Exon4.26E−032.00431620AA126109Hs. 2649812′-5′-oligoadenylate synthetase 2 (69-714.05E−031.96414915NM_002462Hs. 76391myxovirus (influenza) resistance 1, homo2.34E−031.94435956AF269255Hs. 22604lysosomal apyrase-like protein 11.31E−031.90418165R45959Hs. 6637ESTs3.05E−031.89449261AI637592ESTs3.00E−031.89458833AW236702Hs. 171431ESTs, Weakly similar to A46010 X-linked6.83E−031.87433156R59206Hs. 17519Homo sapiens cDNA: FLJ22539 fis, clone H4.62E−041.86405468NM_022820*: Homo sapiens cytochrome P4501.23E−031.85420772AW752656Hs. 222707KIAA1718 protein3.77E−041.85451505AI290219Hs. 25223ESTs, Highly similar to YSHUT threonine-7.46E−031.84423955AI420582Hs. 136164cutaneous T-cell lymphoma-associated tum7.60E−041.83433207AB040903Hs. 284146hypothetical protein DKFZp762N06109.89E−031.83402605Target Exon3.64E−031.82427958AA418000Hs. 98280potassium intermediate/small conductance5.64E−031.82416879H98899Hs. 42599ESTs8.76E−031.81458891AI659166Hs. 207144ESTs8.31E−031.78432384AW006770Hs. 162193ESTs4.60E−031.78424049A8014524Hs. 138380KIAA0624 protein3.61E−041.77415723AA330633Hs. 23450mitochondrial ribosomal protein S252.35E−031.76437556AI223078Hs. 136776ESTs4.24E−031.75436869NM_014867Hs. 5333KIAA0711 gene product6.34E−031.75417054AF017060aldehyde oxidase 13.52E−031.75411194AW821559gb: IL2-ST0311-271299-030-D03 ST0311 Homo4.86E−031.74421822AV650066Hs. 1430coagulation factor XI (plasma thrombopla9.90E−041.71453866AW291498Hs. 250557ESTs6.34E−031.70414812X72755Hs. 77367monokine induced by gamma interferon2.10E−031.68457247AA458605KIAA1681 protein9.08E−031.66426315AA854219Hs. 348137Homo sapiens, clone IMAGE: 3542716, mRNA,1.33E−031.66449774R06076gb: ye94c02.s1 Soares fetal liver spleen1.81E−031.66439281AA100768Hs. 48485ESTs, Weakly similar to I38022 hypotheti9.06E−031.65435545AA687415Hs. 28107ESTs5.39E−031.65453336AW139766Hs. 233431ESTs5.32E−041.64403640ENSP00000233023*: CDNA FLJ12662 fis, clon8.54E−041.63436790AI498610ESTs5.14E−031.62400552Target Exon9.71E−041.62427185AA398930ESTs3.78E−031.61403609C3001199: gi|7494834|pir||T15308 hypothet1.26E−031.60425468BE141170gb: MR0-HT0077-011099-001-a05 HT0077 Homo5.35E−031.59415374F06904Hs. 8346ESTs8.79E−031.59440700AW952281Hs. 296184guanine nucleotide binding protein (G pr9.04E−031.59424465AI216391Hs. 169939heparan sulfate 2-O-sulfotransferase3.85E−031.56430374AF064104Hs. 22116CDC14 (cell division cycle 14, S. cerevi1.66E−031.56418129X52997Hs. 1144glycoprotein IX (platelet)8.20E−031.55421497BE145334BANP homolog, SMAR1 homolog8.31E−041.54440083AI433721Hs. 164153ESTs4.34E−031.53401740ENSP00000005503*: SA (rat hypertension-as8.69E−031.53447083AI472124Hs. 157757ESTs7.48E−031.52411183BE141178gb: MR0-HT0077-011099-002-b06 HT0077 Homo6.03E−031.52426912AL043054Hs. 256657ESTs, Weakly similar to A46302 PTB-assoc2.41E−031.51405720Target Exon5.64E−031.51442068BE312873Hs. 314932ESTs5.81E−031.50400279NM_004581*: Homo sapiens Rab geranylgeran9.72E−031.49428138AA773842Hs. 293799ESTs2.77E−031.49451792AA019795Hs. 200235ESTs1.40E−031.49400846sortilin-related receptor, L(DLR class)7.96E−041.48438683AA813982ESTs7.91E−031.48425304AA463844Hs. 31339fibroblast growth factor 119.32E−031.42433785BE044593Hs. 112704ESTs3.60E−031.42421488F13451Hs. 77515gb: HSC37A091 normalized infant brain cDN4.59E−031.41443150AI034467Hs. 34650ESTs4.28E−041.39401439NM_022495*: Homo sapiens hypothetical pro9.26E−041.38429443AB028967Hs. 202687potassium voltage-gated channel, Shal-re3.53E−031.36408299AW886716Hs. 154396hypothetical protein FLJ222823.26E−031.35427009AA394290Hs. 97353ESTs5.89E−031.34415770M79237gb: EST01385 Subtracted Hippocampus, Stra3.83E−031.34431718AI337294GaINAc alpha-2, 6-sialyltransferase I, I8.31E−041.33443765AI084960Hs. 334589ESTs1.23E−031.33436945AA918210Hs. 121116ESTs6.32E−031.33429018AW892660Hs. 146286kinesin family member 13A8.65E−041.33428207BE263644Hs. 169119gb: 601192069F1 NIH_MGC_7 Homo sapiens cD3.47E−031.30433611AW327692Hs. 3446mitogen-activated protein kinase kinase5.80E−031.29438900AA827856Hs. 124299ESTs9.32E−031.29444131AI806600Hs. 328579EST, Weakly similar to A55362 procollage6.31E−031.28458153AI792267Hs. 125363ESTs2.19E−031.28425326AW501870gb: UI-HF-BR0p-ajo-g-06-0-UI.r1 NIH_MGC_54.51E−031.28428803AA913233Hs. 153179ESTs, Highly similar to Human Recombinan7.01E−031.28409570AW418720Hs. 167583ESTs7.21E−031.26415835Z45365gb: HSC2NF061 normalized infant brain cDN5.71E−031.26403740NM_001076*: Homo sapiens UDP glycosyltran4.08E−031.24446780R31107gb: yh61g01.s1 Soares placenta Nb2HP Homo2.41E−031.24443773AV646452Hs. 30941calcium channel, voltage-dependent, beta4.95E−031.24409008AA059392Hs. 66791ESTs6.61E−031.23426426AI569804Hs. 42792ESTs, Weakly similar to I78885 serine/th6.82E−031.23436752AW298529ESTs2.55E−031.23455202AW865320gb: PM4-SN0020-300300-007-a11 SN0020 Homo8.34E−031.21445613BE550889Hs. 158491ESTs7.33E−031.20442387AI239835Hs. 341782ESTs2.43E−031.19444521H58280Hs. 8366ESTs4.22E−041.19458273AW770493Hs. 182874guanine nucleotide binding protein (G pr9.33E−031.19419662W87674gb: zh66a01.r1 Soares_fetal_liver_spleen6.47E−041.18402842ENSP00000241325*: DJ947L8.1.3 (novel CUB7.14E−031.18417715AW969587Hs. 86366ESTs9.63E−031.15410209AI583661Hs. 60548hypothetical protein PRO16353.03E−031.15414832W27128Hs. 100057Homo sapiens cDNA: FLJ22902 fis, clone K1.12E−031.14425851NM_001490Hs. 159642glucosaminyl (N-acetyl) transferase 1, c7.36E−031.14408906AW294539Hs. 255323ESTs7.49E−031.13444211AW390415Hs. 79013ESTs, Moderately similar to 1207289A rev5.07E−031.13444362AW892056Hs. 110853ESTs2.18E−031.12418453T93674Hs. 268815ESTs8.59E−031.11427761AA412205Hs. 140996ESTs8.41E−031.11402149Target Exon6.08E−031.10412150AW895719gb: QV4-NN0039-290300-154-f06 NN0039 Homo2.46E−031.10446250AI283067Hs. 320873EST9.30E−031.10427201AB037860Hs. 173933nuclear factor I/A2.60E−031.10439620AA838727Hs. 124405ESTs, Weakly similar to A46010 X-linked6.98E−031.10401929C17001690: gi|6005701|ref|NP_009099.1|AT8.77E−031.08406466Target Exon4.76E−041.07446266AI417271Hs. 163949ESTs, Weakly similar to I38022 hypotheti5.84E−031.06424579BE614288Hs. 285391DKFZP564P1916 protein4.35E−031.06453585AL043430Hs. 325309hypothetical protein FLJ145963.07E−031.06420399AA743258Hs. 291545ESTs6.92E−031.05435147AL133731Hs. 4774Homo sapiens mRNA; cDNA DKFZp761C1712 (f6.17E−031.04400636C10001873: gi|11056014|ref|NP_067651.1|a8.97E−031.03436737AI052229Hs. 25373ESTs, Weakly similar to T20410 hypotheti8.30E−031.03414278AA330116Human glucose transporter pseudogene2.95E−031.02457599AW997833Hs. 257267FYVE and coiled-coil domain containing 15.05E−031.01431006BE152871gb: CM1-HT0333-101299-064-d12 HT0333 Homo5.72E−031.01421932W51778Hs. 323949kangai 1 (suppression of tumorigenicity2.60E−031.01405761ENSP00000203606: CDNA FLJ14191 fis, clone6.05E−031.01450078AI681743gb: tx38g10.x1 NCI_CGAP_Lu24 Homo sapiens3.38E−031.01402942Target Exon5.84E−031.00Pkey: Unique Eos probeset identifier numbe ExAccn: Exemplar Accession number, Genbank accession number UnigeneID: Unigene number Unigene Title: Unigene gene title R1: T-test p-value R2: Difference of the average standardized value of responders vs. the average standardized value of non-responders


[0375]

40







TABLE 14B








Pkey
CAT Number
Accession







417199
1965264_1
AA194635 H48304 R22482 R99998


458492
2797412_1
AI869287 AI143655


412003
1146633_1
R11775 F05441 F07670 AW883427 T26374


449261
3029652_1
AI923721 AI860294 AI637592


417054
12405_2
BG533564 BG618564 AW296119 AI269233 BF508328 AW364777 AW292258




AA371049 AI452471 AI092522 BG618376 AL049080 AA631068




BG564643 T53833 AV702544 BG533452 AV705004 AA588281 T28665 BG569026 AV646874 AV647253




AV647455 AV647749 BI759444




AV652457 AV695354 AV696010 AV697248 BG617586 AV722549 AI435836 AI590676 AI245019 AW338243




AA530898 D52191 AI435352




D57473 BG566952 AI420505 AA035245 AV704972 BG564113 AI439237 AI287456 AV695686 AA349017


411194
1072676_1
AW821558 AW821559 AW821557 AW821643 AW821560 AW821497 AW821639




AW821498 AW821496 AW821499


457247
22785_1
AB051468 AW977252 AI261627 AW665579 AW274550 AI418272 AW293861




AA731376 BF798878 BF445807 AB053320 AK022729 AW959911




AV658411 H10450 AI073358 AA889598 BF445392 AI368772 AA421057 AA702576 F09058 AA327610




AL135425 AU135871 AU125838




BE467087 BG661269 AI697843 BF111090 AI814556 AI689772 BE348775 AI689791 BF475299 AA987614




AI802005 N79670 BG564339




AW172331 AW592078 AA487432 AI270312 BF062573 AI755254 AI655337 AI753287 AI753432 N63992




AA758915 AA903180 AA126824




AI202889 AA778528 H99263 BF435656 BI755650 AW806648 BE547432 AA872493 H49166 AI167329




BG222086 AW751006 AW751005




BE827287 BI521573 BE737978 AA194149 W74616 AW138578 AI128240 AI498242 BM314911




AA642425 AW583264 AI332987 AW241875




N62879 AI362749 AI761951 AI370777 AI332423 AA903009 AI207967 AI435328 BG222922 BG222858




AW262522 AA758655 AA649251




AA235233 N77786 H30532 H30545 T94316 AW855131 AW992588 BG998544 BE076575 BG958225




AW772819 T83121 T80942 BF088923


449774
79702_1
AA007258 R06179 AA004224 R06076


436790
647116_1
AI936636 AI498610 AI589571 AA731428 AW182143


427185
1312946_1
AI204518 AA398930 AA402069


425468
1280868_1
BE141170 BE141413 BE141342 AA357975


421497
MH1660_34
BM012343 BG990287 BI054221 AA292029 BE090740 BE147105 BF945352




BE147159 AW837076 BE702303 BE166423 BF833717 BF898447




BF945348 AW085137 N58701 T81141 BG977546 BE160737 R81151 BF833715 R76844 BE145334




AA292072 BF747231


411183
1072365_1
BE141178 AW821110 BI048110


400279
2140_1
Y08200 NM_004581 BC003093 BE733834 BI753321 BG773890 BF091906




BI917541 AI023762 AA587230 BF435086 AI264262 AI687392




AI810536 AW589886 AI244419 AA749261 AA535435 AW205689 AI765770 AI765431 C02465 AW305347




AI818456 AA322111 AW381845




AW381829 AV749407 AA811636 AU159893 AA603065 AA652542 AI468678 R49616 AW381863 BE389867




BE182387 BF087771 AA527551




AA134051 AA831504 AA134052 AI871759 AW089048 BI913532 AA367709 BG828155 BF093014


438683
1241644_1
AA813982 AW978060 AA825734


415770
2051914_1
AA169260 AI267298 M79237


431718
3517_3
AW970730 AA524205 AW293340 AI337294 AA514491 AI858216 AA552097 AI857575


425326
916327_1
BE886799 AW846391 AW501870 AW502583 AW503003 AA355226 AW751981




AW846539 R11565 AA378251 AW846548 AW846136




AW846484


415835
1894612_1
T77496 Z45365 H05203 R25905


446780
1290689_1
AL568290 AI653198 AA371134 BE005364 AI341136 BI493548 H04953 R31107


436752
727461_1
AW977246 AW298529 AA972071 AA730213


455202
1108949_1
AW865320 AW865316 AW865249 AW865381 AW865379 BF373916 AW865250




AW865118 AW865123 AW865391 AW865043 BF373931




BF373934 AW865448


419662
2431548_1
W87872 W87674 W87774


412150
1155126_1
AW895719 N31451 N41451


414278
2649_1
BG564077 AA928199 BI491412 AI913576 AI769974 AA805536 AI978876 AI879646




AI640283 BM153392 AA137260 AI151263 AI474103




AW078667 AW079202 AA150376 BE048238 AI218961 AA631892 AI350813 AI758351 AI458422 AA150275




AI038862 AW183342 AA912346




AW468933 AI003046 AI208534 H60032 T34660 Z40410 AA621093 BE245388 N66384 AW118966 T17277




AW020353 BE467084 AI268780




BE003683 AA330116 R77760 AI473113 AI985726 BE813657 BE813503 BF326782 AI690850 N52225




AW994769 BI036529 R40472 BE813513


431006
1524128_1
AA490552 BE152870 BE152871


450078
1156200_1
AI681743 AW897284 AW897205 AW897287






Pkey: Unique Eos probeset identifier number




CAT number: Gene cluster number




Accession: Genbank accession numbers








[0376]

41








TABLE 14C








Pkey
Ref
Strand
Nt_position







402399
1905915
Minus
24502-24666, 24986-25102


405481
3688109
Plus
5718-5837, 8719-8818


401191
9716907
Plus
22341-22636


402885
9926751
Plus
71919-72049


405468
8051573
Minus
69367-69529, 71227-71453,





73076-73236


402605
9909420
Minus
47680-47973


403640
8671948
Minus
161756-161859, 164798-164914


400552
9801071
Plus
93101-93276


403609
8308266
Minus
125974-126320


401740
2982169
Plus
148357-148484, 148591-148690


405720
9797144
Plus
13409-13861


400846
9188605
Plus
39310-39474


401439
8246737
Plus
92993-94026


403740
7630882
Plus
86504-87227


402842
9369121
Minus
76355-76479


402149
8079589
Minus
86399-86618


401929
3810670
Minus
3167-3286, 4216-4310


406466
9795550
Plus
115511-115658, 118766-118915,





121699-12177


400636
3818355
Minus
102143-102322


405761
1332524
Minus
22866-23294


402942
9368398
Plus
102152-102386






Pkey: Unique number corresponding to an Eos probeset




Ref: Sequence source. The 7 digit numbers in this column are Genbank Identifier (GI) numbers. “Dunham, et al.” refers to the publication entitled “The DNA sequence of human chromosome 22” Dunham, et al. (1999) Nature 402: 489-495.




Strand: Indicates DNA strand from which exons were predicted.




Nt_position: Indicates nucleotide positions of predicted exons.








[0377]

42





TABLE 15










Pkey: 444342


UnigeneID: Hs.10887


Unigene Title: similar to lysosome-associated membrane glycoprotein


DNA Sequence


Nucleic Acid Accession #: NM_014398.1


Coding sequence: 64..1314








1          11         21         31         41         51



|          |          |          |          |          |


GGCACCGATT CGGGGCCTGC CCGGACTTCG CCGCACGCTG CAGAACCTCG CCCAGCGCCC
60





ACCATGCCCC GGCAGCTCAG CGCGGCGGCC GCGCTCTTCG CGTCCCTGGC CGTAATTTTG
120





CACGATGGCA GTCAAATGAG AGCAAAAGCA TTTCCAGAAA CCAGAGATTA TTCTCAACCT
180





ACTGCAGCAG CAACAGTACA GGACATAAAA AAACCTGTCC AGCAACCAGC TAAGCAAGCA
240





CCTCACCAAA CTTTAGCAGC AAGATTCATG GATGGTCATA TCACCTTTCA AACAGCGGCC
300





ACAGTAAAAA TTCCAACAAC TACCCCAGCA ACTACAAAAA ACACTGCAAC CACCAGCCCA
360





ATTACCTACA CCCTGGTCAC AACCCAGGCC ACACCCAACA ACTCACACAC AGCTCCTCCA
420





GTTACTGAAG TTACAGTCGG CCCTAGCTTA GCCCCTTATT CACTGCCACC CACCATCACC
480





CCACCAGCTC ATACAGCTGG AACCAGTTCA TCAACCGTCA GCCACACAAC TGGGAACACC
540





ACTCAACCCA GTAACCAGAC CACCCTTCCA GCAACTTTAT CGATAGCACT GCACAAAAGC
600





ACAACCGGTC AGAAGCCTGA TCAACCCACC CATGCCCCAG GAACAACGGC AGCTGCCCAC
660





AATACCACCC GCACAGCTGC ACCTGCCTCC ACGGTTCCTG GGCCCACCCT TGCACCTCAG
720





CCATCGTCAG TCAAGACTGG AATTTATCAG GTTCTAAACG GAAGCAGACT CTGTATAAAA
780





GCAGAGATGG GGATACAGCT GATTGTTCAA GACAAGGAGT CGGTTTTTTC ACCTCGGAGA
840





TACTTCAACA TCGACCCCAA CGCAACGCAA GCCTCTGGGA ACTGTGGCAC CCGAAAATCC
900





AACCTTCTGT TGAATTTTCA GGGCGGATTT GTGAATCTCA CATTTACCAA GGATGAAGAA
960





TCATATTATA TCAGTGAAGT GGGAGCCTAT TTGACCGTCT CAGATCCAGA GACAGTTTAC
1020





CAAGGAATCA AACATGCGGT GGTGATGTTC CAGACAGCAG TCGGGCATTC CTTCAAGTGC
1080





GTGAGTGAAC AGAGCCTCCA GTTGTCAGCC CACCTGCAGG TGAAAACAAC CGATGTCCAA
1140





CTTCAAGCCT TTGATTTTGA AGATGACCAC TTTGGAAATG TGGATGAGTG CTCGTCTGAC
1200





TACACAATTG TGCTTCCTGT GATTGGGGCC ATCGTGGTTG GTCTCTGCCT TATGGGTATG
1260





GGTGTCTATA AAATCCGCCT AAGGTGTCAA TCATCTGGAT ACCAGAGAAT CTAATTGTTG
1320





CCCGGGGGGA ATGAAAATAA TGGAATTTAG AGAACTCTTT CATCCCTTCC AGGATGGATG
1380





TTGGGAAATT CCCTCAGAGT GTGGGTCCTT CAAACAATGT AAACCACCAT CTTCTATTCA
1440





AATGAAGTGA GTCATGTGTG ATTTAAGTTC AGGCAGCACA TCAATTTCTA AATACTTTTT
1500





GTTTATTTTA TGAAAGATAT AGTGAGCTGT TTATTTTCTA GTTTCCTTTA GAATATTTTA
1560





GCCACTCAAA GTCAACATTT GAGATATGTT GAATTAACAT AATATATGTA AAGTAGAATA
1620





AGCCTTCAAA TTATAAACCA AGGGTCAATT GTAACTAATA CTACTGTGTG TGCATTGAAG
1680





ATTTTATTTT ACCCTTGATC TTAACAAAGC CTTTGCTTTG TTATCAAATG GACTTTCAGT
1740





GCTTTTACTA TCTGTGTTTT ATGGTTTCAT GTAACATACA TATTCCTGGT GTAGCACTTA
1800





ACTCCTTTTC CACTTTAAAT TTGTTTTTGT TTTTTGAGAC GGAGTTTCAC TCTTGTCACC
1860





CAGGCTGGAG TACAGTGGCA CGATCTCGGC TTATGGCAAC CTCCGCCTCC CGGGTTCAAG
1920





TGATTCTCCT GCTTCAGCTT CCCGAGTAGC TGGGATTACA GGCACACACT ACCACGCCTG
1980





GCTAATTTTT GTATTTTTAT TATAGACGGG TTTCACCATG TTGGCCAGAC TGGTCTTGAA
2040





CTCTTGACCT CAGGTGATCC ACCCACCTCA GCCTCCCAAA GTGCTGGGAT TACAGGCATG
2100





AGCCATTGCG CCCGGCCTTA AATGTTTTTT TTAATCATCA AAAAGAACAA CATATCTCAG
2160





GTTGTCTAAG TGTTTTTATG TAAAACCAAC AAAAAGAACA AATCAGCTTA TATTTTTTAT
2220





CTTGATGACT CCTGCTCCAG AATTGCTAGA CTAAGAATTA GGTGGCTACA GATGGTAGAA
2280





CTAAACAATA AGCAAGAGAC AATAATAATG GCCCTTAATT ATTAACAAAG TGCCAGAGTC
2340





TAGGCTAAGC ACTTTATCTA TATCTCATTT CATTCTCACA ACTTATAAGT GAATGAGTAA
2400





ACTGAGACTT AAGGGAACTG AATCACTTAA ATGTCACCTG GCTAACTGAT GGCAGAGCCA
2460





GAGCTTGAAT TCATGTTGGT CTGACATCAA GGTCTTTGGT CTTCTCCCTA CACCAAGTTA
2520





CCTACAAGAA CAATGACACC ACACTCTGCC TGAAGGCTCA CACCTCATAC CAGCATACGC
2580





TCACCTTACA GGGAAATGGG TTTATCCAGG ATCATGAGAC ATTAGGGTAG ATGAAAGGAG
2640





AGCTTTGCAG ATAACAAAAT AGCCTATCCT TAATAAATCC TCCACTCTCT GGAAGGAGAC
2700





TGAGGGGCTT TGTAAAACAT TAGTCAGTTG CTCATTTTTA TGGGATTGCT TAGCTGGGCT
2760





GTAAAGATGA AGGCATCAAA TAAACTCAAA GTATTTTTAA ATTTTTTTGA TAATAGAGAA
2820





ACTTCGCTAA CCAACTGTTC TTTCTTGAGT GTATAGCCCC ATCTTGTGGT AACTTGCTGC
2880





TTCTGCACTT CATATCCATA TTTCCTATTG TTCACTTTAT TCTGTAGAGC AGCCTGCCAA
2940





GAATTTTATT TCTGCTGTTT TTTTTGCTGC TAAAGAAAGG AACTAAGTCA GGATGTTAAC
3000





AGAAAAGTCC ACATAACCCT AGAATTCTTA GTCAAGGAAT AATTCAAGTC AGCCTAGAGA
3060





CCATGTTGAC TTTCCTCATG TGTTTCCTTA TGACTCAGTA AGTTGGCAAG GTCCTGACTT
3120





TAGTCTTAAT AAAACATTGA ATTGTAGTAA AGGTTTTTGC AATAAAAACT TACTTTGG
3178





Protein Sequence


Protein Accession #: NP_055213.1


1          11         21         31         41         51


|          |          |          |          |          |


MPRQLSAAAA LFASLAVILH DGSQMRAKAF PETRDYSQPT AAATVQDIKK PVQQPAKQAP
60





HQTLAARFMD GHITFQTAAT VKIPTTTPAT TKNTATTSPI TYTLVTTQAT PNNSHTAPPV
120





TEVTVGPSLA PYSLPPTITP PAHTAGTSSS TVSHTTGNTT QPSNQTTLPA TLSIALHKST
180





TGQKPDQPTH APGTTAAAHN TTRTAAPAST VPGPTLAPQP SSVKTGIYQV LNGSRLCIKA
240





EMGIQLIVQD KESVFSPRRY FNIDPNATQA SGNCGTRKSN LLLNFQGGFV NLTFTKDEES
300





YYISEVGAYL TVSDPETVYQ GIKHAVVMFQ TAVGHSFKCV SEQSLQLSAH LQVKTTDVQL
360





QAFDFEDDHF GNVDECSSDY TIVLPVIGAI VVGLCLMGMG VYKIRLRCQS SGYQRI
416










[0378] It is understood that the examples described above in no way serve to limit the true scope of this invention, but rather are presented for illustrative purposes. All publications, sequences of accession numbers, and patent applications cited in this specification are herein incorporated by reference as if each individual publication or patent application were specifically and individually indicated to be incorporated by reference.


Claims
  • 1. A method of detecting an RNA transcript associated with Hepatitis C infection in a cell from a patient, the method comprising contacting a biological sample from the patient with a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15.
  • 2. The method of claim 1, wherein: a) the biological sample comprises isolated nucleic acids; or b) the marker expression provides prognostic information to determine treatment alternative.
  • 3. The method of claim 2, wherein the nucleic acids are mRNA.
  • 4. The method of claim 2, further comprising the step of amplifying nucleic acids before the step of contacting the biological sample with the polynucleotide.
  • 5. The method of claim 1, wherein the polynucleotide comprises a sequence as shown in Tables 1A-15.
  • 6. The method of claim 1, wherein the polynucleotide is immobilized on a solid surface.
  • 7. The method of claim 1, wherein the patient is undergoing a therapeutic regimen to treat Hepatitis C infection and/or its secondary consequences.
  • 8. The method of claim 1, wherein the patient is suspected of suffering from Hepatitis C infection.
  • 9. An isolated nucleic acid molecule consisting of a polynucleotide sequence as shown in Tables 1A-15.
  • 10. The nucleic acid molecule of claim 9, which is labeled.
  • 11. An expression vector comprising the nucleic acid of claim 9.
  • 12. A host cell comprising the expression vector of claim 11.
  • 13. An isolated polypeptide which is encoded by a nucleic acid molecule having polynucleotide sequence as shown in Tables 1A-15.
  • 14. An antibody that specifically binds a polypeptide of claim 13.
  • 15. The antibody of claim 14, further conjugated to an effector component.
  • 16. The antibody of claim 15, wherein the effector component is a fluorescent label.
  • 17. The antibody of claim 15, wherein the effector component is a radioisotope or a cytotoxic chemical.
  • 18. The antibody of claim 15, which is an antibody fragment.
  • 19. The antibody of claim 15, which is a humanized antibody
  • 20. A method of detecting a cell affected by Hepatitis C infection or its secondary consequences in a biological sample from a patient, the method comprising contacting the biological sample with an antibody of claim 14.
  • 21. The method of claim 20, wherein the antibody is further conjugated to an effector component.
  • 22. The method of claim 21, wherein the effector component is a fluorescent label.
  • 23. A method for identifying a compound that modulates a Hepatitis C infection-associated polypeptide, the method comprising the steps of: a) contacting the compound with a Hepatitis C infection-associated polypeptide, the polypeptide encoded by a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15 and b) determining the functional effect of the compound upon the polypeptide.
  • 24. A drug screening assay comprising the steps of a) administering a test compound to a mammal suffering from Hepatitis C infection and its secondary consequences or a cell isolated therefrom b) comparing the level of gene expression of a polynucleotide that selectively hybridizes to a sequence at least 80% identical to a sequence as shown in Tables 1A-15 in a treated cell or mammal with the level of gene expression of the polynucleotide in a control cell or mammal, wherein a test compound that modulates the level of expression of the polynucleotide is a candidate for the treatment of Hepatitis C infection and its secondary consequences.
CROSS-REFERENCES TO RELATED APPLICATIONS

[0001] The present invention is related to U.S. S No. 60/308,188, filed Jul. 26, 2001; and U.S. S No. 60/366,782, filed Mar. 21, 2002, each of which is incorporated herein by reference.

Provisional Applications (2)
Number Date Country
60366782 Mar 2002 US
60308188 Jul 2001 US
Continuations (1)
Number Date Country
Parent 10206473 Jul 2002 US
Child 10366435 Feb 2003 US