METHODS OF USING EHMT2 INHIBITORS IN IMMUNOTHERAPIES

Abstract
The present disclosure relates to methods and compositions for treating immune-mediated diseases. In some aspects, the disclosure relates to methods for treating immune-mediated diseases by administering an EHMT2 inhibitor in combination with one or more treatment modalities (e.g. one or more therapeutic agents). In some aspects the immune-mediated disease is rheumatoid arthritis, multiple sclerosis, psoriasis, a psoriatic disorder, psoriatic arthritis, or an inflammatory bowel disease.
Description
BACKGROUND

Methylation of protein lysine residues is an important signaling mechanism in eukaryotic cells, and the methylation state of histone lysines encodes signals that are recognized by a multitude of proteins and protein complexes in the context of epigenetic gene regulation.


Histone methylation is catalyzed by histone methyltransferases (HMTs), and HMTs have been implicated in various human diseases. HMTs can play a role in either activating or repressing gene expression, and certain HMTs (e.g., euchromatic histone-lysine N-methyltransferase 2 or EHMT2, also called G9a) may methylate many nonhistone proteins, such as tumor suppressor proteins (see, e.g., Liu et al., Journal of Medicinal Chemistry 56:8931-8942, 2013 and Krivega et al., Blood 126(5):665-672, 2015).


Two related HMTs, EHMT1 and EHMT2, are overexpressed or play a role in diseases and disorders such as sickle cell anemia (see, e.g., Renneville et al., Blood 126(16): 1930-1939, 2015) and proliferative disorders (e.g., cancers), and other blood disorders.


SUMMARY

In some aspects, the present disclosure provides a method of preventing or treating a disease or disorder associated with overexpression of EHMT2, comprising administering to a subject in need thereof a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor. In some embodiments, the method further comprises administering to the subject one or more additional treatment modalities in a therapeutically effective amount, wherein the one or more additional treatment modalities comprises one or more second therapeutic agents.


In some aspects, the present disclosure provides a method of preventing treating an immune-mediated disease, comprising administering to a subject in need thereof a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor. In some embodiments, the method further comprises administering to the subject one or more additional treatment modalities in a therapeutically effective amount, wherein the one or more additional treatment modalities comprises one or more second therapeutic agents.


In some aspects, the disclosure is based upon the discovery that EHMT2 inhibitors and other treatment modalities can be used in combination to treat certain diseases with superior results than those achieved by treating these diseases with EHMT2 inhibitors or the other treatment modalities alone. Accordingly, the disclosure provides methods comprising administering an EHMT2 inhibitor and one or more other treatment modalities to a subject in need thereof. The disclosure also provides compositions and combinations comprising an EHMT2 inhibitor and one or more second therapeutic agents, and methods for their use to treat diseases the course of which can be influenced by modulating the methylation status of non-histone proteins, e.g., certain diseases involving the immune system, which are also referred to as immune-mediated diseases.


Some aspects of this disclosure provide methods, strategies, treatment modalities, compositions, and combinations, for the treatment of a disease or disorder associated with overexpression of EHMT2. In some aspects, the present disclosure provides a method of treating a disease or disorder associated with overexpression of EHMT2, comprising administering to a subject in need thereof (a) a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor, and (b) one or more additional treatment modalities, e.g., with one or more additional therapeutic agent, in a therapeutically effective amount.


Some aspects of this disclosure provide methods, strategies, treatment modalities, compositions, and combinations, for the treatment of an immune-mediated disease or disorder. In some aspects, the present disclosure provides methods of treating an immune-mediated disease or disorder, comprising administering to a subject in need thereof (a) a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor, and (b) one or more additional treatment modalities in a therapeutically effective amount.


In certain embodiments, the first agent and/or the second agent may comprise a pharmaceutically acceptable carrier. The pharmaceutically acceptable carrier may be the same for the first and second agents or may be distinct between the first and second agents.


In some embodiments, the one or more second agents comprise two or more second therapeutic agents (e.g., two, three, four, or five, or more, different second therapeutic agents).


In further aspects, the present disclosure provides an EHMT2 inhibitor for use as medicament in the treatment of an immune-mediated disease or disorder in a subject in need thereof, wherein the subject is also administered one or more second agents in a therapeutically effective amount.


In further aspects, the present disclosure provides an EHMT2 inhibitor for use in the treatment of an immune-mediated disease or disorder in a subject in need thereof, wherein the subject is also administered one or more second agents in a therapeutically effective amount.


In further aspects, the present disclosure provides the use of an EHMT2 inhibitor in the manufacture of a medicament for the treatment of an immune-mediated disease or disorder in a subject in need thereof, wherein the subject is also administered one or more second agents in a therapeutically effective amount.


In further aspects, the present disclosure provides an EHMT2 inhibitor for use as a medicament for combinational therapy with one or more second agents in a therapeutically effective amount, for the treatment of an immune-mediated disease or disorder in a subject in need thereof.


In further aspects, the present disclosure provides the use of an EHMT2 inhibitor in the manufacture of a medicament for combinational therapy with one or more second agents in a therapeutically effective amount, for the treatment of an immune-mediated disease or disorder in a subject in need thereof.


In further aspects, the disclosure provides an EHMT2 inhibitor for use in a combinational therapy with one or more second agents in a therapeutically effective amount, for the treatment of an immune-mediated disease or disorder in a in a subject in need thereof.


In some aspects, the disclosure provides pharmaceutical compositions comprising an EHMT2 inhibitor of the disclosure, and one or more second agents.


In some embodiments, the EHMT2 inhibitor is an EHMT2 inhibitor provided herein. For example, and without limitation, in some embodiments, the EHMT2 inhibitor is a compound of Formula (I), (I′), (I′), (II″), (III″), (III″), (I′″), (II′″), or (III′″), or a pharmaceutically acceptable salt or a tautomer thereof, or a pharmaceutically acceptable salt the tautomer thereof. In some embodiments, the EHMT2 inhibitor is a compound is selected from those in Tables 1A-1E, 2-4, 4A, and 5, or a pharmaceutically acceptable salt or a tautomer thereof, or a pharmaceutically acceptable salt the tautomer thereof.


In some embodiments, the EHMT2 inhibitor is a compound having the following structure:




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or a pharmaceutically acceptable salt or a tautomer thereof, or a pharmaceutically acceptable salt the tautomer thereof.


In some embodiments, the EHMT2 inhibitor is a compound having the following structure:




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or a pharmaceutically acceptable salt or a tautomer thereof, or a pharmaceutically acceptable salt the tautomer thereof.


In some embodiments, the EHMT2 inhibitor is




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or a pharmaceutically acceptable salt or a tautomer thereof, or a pharmaceutically acceptable salt the tautomer thereof.


In some embodiments, the one or more additional treatment modalities comprises one or more second therapeutic agents.


In some embodiments, the immune-mediated disease is an autoimmune disease. In some embodiments, the immune-mediated disease is an inflammatory disease or is characterized or associated with acute or chronic inflammation. In some embodiments, the immune-related disease is selected from the group comprising rheumatoid arthritis, multiple sclerosis, psoriasis, psoriatic disorders, psoriatic arthritis, and inflammatory bowel disease. For example, in some embodiments, the disease is rheumatoid arthritis. For example, in some embodiments, the disease is multiple sclerosis. For example, in some embodiments, the disease is psoriasis. For example, in some embodiments, the disease is a psoriatic disorder. For example, in some embodiments, the disease is psoriatic arthritis. For example, in some embodiments, the disease is an inflammatory bowel disease. For example, in some embodiments, the disease is Crohn's disease. For example, in some embodiments, the disease is ulcerative colitis.


In some embodiments, the one or more second therapeutic agents is selected from the group comprising tocilizumab, leflunomide, sulfasalazine, valdecoxib, certolizumab pegol, ibuprofen, famotidine, a combination of ibuprofen and famotidine, iodine, adalimumab, sarilumab, anakinra, naproxen sodium, abatacept, infliximab, golimumab, rofecoxib, tofacitinib, canakinumab, mesalamine, balsalazide, olsalazine, prednisone, budesonide, azathioprine, mercaptopurine, cyclosporine, methotrexate, golimumab, natalizumab, vedolizumab, ustekinumab, pharmaceutically acceptable salts thereof, and combinations thereof. In some such embodiments, the immune-mediated disease is rheumatoid arthritis.


In some embodiments, the one or more second therapeutic agents is selected from the group comprising dalfampridine, teriflunomide, leflunomide, interferon beta-1a, interferon beta-1b, glatiramer acetate, fingolimod, alemtuzumab, mitoxantrone hydrochloride, ocrelizumab, pegylated interferon beta-1a, dimethyl fumarate, natalizumab, daclizumab, mesalamine, balsalazide, olsalazine, prednisone, budesonide, azathioprine, mercaptopurine, cyclosporine, methotrexate, infliximab, adalimumab, golimumab, natalizumab, vedolizumab, ustekinumab, pharmaceutically acceptable salts thereof, and combinations thereof. In some such embodiments, the disease is multiple sclerosis.


In some embodiments, the one or more second therapeutic agents is selected from the group comprising alefacept, secukinumab, calcipotriene, betamethasone dipropionate, a combination of calcipotriene and betamethasone dipropionate, apremilast, prednisone, brodalumab, ustekinumab, ixekizumab, tazarotene, guselkumab, etanercept, mesalamine, balsalazide, olsalazine, prednisone, budesonide, azathioprine, mercaptopurine, cyclosporine, methotrexate, infliximab, adalimumab, golimumab, natalizumab, vedolizumab, ustekinumab, pharmaceutically acceptable salts thereof, and combinations thereof. In some such embodiments, the immune-mediated disease is psoriasis, a psoriatic disorder, or psoriatic arthritis


In some embodiments, the one or more second therapeutic agents is selected from the group comprising linaclotide, mesalamine, balsalazide, olsalazine, prednisone, budesonide, azathioprine, mercaptopurine, cyclosporine, methotrexate, infliximab, adalimumab, golimumab, natalizumab, vedolizumab, ustekinumab, pharmaceutically acceptable salts thereof, and combinations thereof. In some such embodiments, the immune-mediated disease is an inflammatory bowel disease.


In some embodiments, the one or more second therapeutic agents is an anti-inflammatory drug. For example, in some embodiments, the anti-inflammatory drug is selected from the group comprising aspirin, diflunisal, salsalate, diclofenac, ibuprofen, naproxen sodium, meloxicam, rofecoxib, valdecoxib, acetaminophen, lodine, mesalamine, balsalazide, olsalazine, betamethasone dipropionate, prednisone, sulfasalazine budesonide, interferon beta 1-b, pegylated interferon beta-1a, canakinumab, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the anti-inflammatory drug is a nonsteroidal anti-inflammatory drug. For example, in some embodiments, the nonsteroidal anti-inflammatory drug is selected from the group comprising aspirin, diflunisal, salsalate, diclofenac, ibuprofen, dexibuprofen, ketoprofen, naproxen sodium, meloxicam, rofecoxib, valdecoxib, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the anti-inflammatory drug is an aminosalicylate. For example, in some embodiments, the aminosalicylate is selected from the group comprising melamine, balsalazide, olsalazine, aspirin, diflunisal, salsalate, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the anti-inflammatory drug is a corticosteroid. For example, in some embodiments, the corticosteroid is selected from the group comprising triamcinolone, cortisone, dexamethasone, prednisone, prednisolone, methylprednisolone, cyclophosphamide, vincristine, doxorubicin, mafosfamide, cisplatin, AraC, everolimus, decitabine, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the anti-inflammatory drug is a biologic. In some embodiments, the biologic is a cytokine or a monoclonal antibody.


In some embodiments, the one or more second therapeutic agents is an immunomodulatory drug. In some embodiments, the immunomodulatory drug is a biologic. In some embodiments, the biologic is a monoclonal antibody or a dimeric fusion protein. In some embodiments, the immunomodulatory drug is an immunosuppressant. In some embodiments, the immunomodulatory drug is a phosphodiesterase (PDE) inhibitor. For example, in some embodiments, the immunomodulatory drug is selected from the group comprising pomalidomide, lenalidomide, thalidomide, apremilast, fingolimod, azathioprine, mercaptopurine, cyclosporine, methotrexate, alefacept, natalizumab, tocilizumab, golimumab interferon beta 1-b, glatiramer acetate, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the one or more second therapeutic agents is a biologic. In some embodiments, the biologic is a monoclonal antibody. For example, in some embodiments, the monoclonal antibody is drug is selected from the group comprising a human IgG1 monoclonal antibody, a human IgG1k monoclonal antibody, an anti α4β7 integrin antibody, an anti-IL-12/23 antibody, and an anti-alpha-4 integrin antibody.


In some embodiments, biologic is a protein. In some embodiments, the biologic is a cytokine or a dimeric fusion protein.


In some embodiments, the biologic is a interleukin 1 (IL1) receptor antagonist, an antibody that binds to CD20, an interleukin-17A (IL-17A) inhibitor, a TNFa inhibitor, a human interleukin-17 receptor A (IL-17RA) antagonist, an interleukin 12 (IL-12) and interleukin 23 (IL-23) antagonist, an antibody that targets the IL-23 subunit alpha, an antibody that blocks interleukin-23 but not IL-12, an agonist of guanylate cyclase 2C, or an interleukin-6 receptor agonist.


In some embodiments, the biologic is selected from the group comprising alefacept, tocilizumab, golimumab, certolizumab pegol, interferon beta 1-b, glatiramer acetate, anakinra, ocrelizumab, pegylated interferon beta-1a, natalizumab, daclizumab, secukinumab, infliximab, vedolizumab, ustekinumab, brodalumab, ixekizumab, guselkumab, etanercept, linaclotide, adalimumab, sarilumab, abatacept, canakinumab, alemtuzumab, and combinations thereof.


In some embodiments, the one or more second therapeutic agent is a disease-modifying antirheumatic drug. In some embodiments, the disease-modifying antirheumatic drug is a biologic or an immunosuppressant. For example, in some embodiments, the disease-modifying antirheumatic drug is selected from the group comprising leflunomide, teriflunomide, sulfasalazine, azathioprine, methotrexate, anakinra, etanercept, tocilizumab, adalimumab, abatacept, infliximab, golimumab, tofacitinib, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the one or more second therapeutic agent is a kinase inhibitor, a potassium channel blocker, a nicotinic acid receptor agonist, an antacid, an antihistamine, an antineoplastic agent, a synthetic vitamin D3 derivative, a retinoid, or a combination thereof. For example, in some embodiments, the one or more therapeutic agents is selected from the group comprising tofacitinib, dalfampridine, dimethyl fumarate, famotidine, mitoxantrone, hydrochloride, calcipotriene, tazarotene, pharmaceutically acceptable salts thereof, and combinations thereof.


In some embodiments, the one or more second therapeutic agent is an HDAC inhibitor. For example, in some embodiments, the HDAC inhibitor is selected from the group comprising vorinostat, romidepsin, chidamide, panobinostat, belinostat, valproic acid, mocetinostat, abexinostat, entinostat, SB939, resminostat, givinostat, quisinostat, HBI-8000, kevetrin, CUDC-101, AR-42, CHR-2845, CHR-3996, 4SC-202, CG200745, ACY-1215, ME-344, sulforaphane, LAQ824, CI994, pharmaceutically acceptable salts thereof, and combinations thereof.


In certain embodiments, the EHMT2 inhibitor is a compound of any one of Formulae (I), (I′), (I′), (II″), (III″), (I′″), (II′″), and (III′″).




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and a tautomer thereof, a pharmaceutically acceptable salt of the compound, or a pharmaceutically acceptable salt of the tautomer, wherein the variables are as defined herein.


In certain embodiments, the one or more second agents comprises a standard-of-care treatment modality for treating rheumatoid arthritis, a standard-of-care treatment modality for treating multiple sclerosis, a standard-of-care treatment modality for treating psoriasis, psoriatic disorders, or psoriatic arthritis or a standard-of-care treatment modality for treating inflammatory bowel disease.


In certain embodiments, the EHMT2 inhibitor and the one or more additional treatment modalities are administered simultaneously. For example, in certain embodiments, the EHMT2 inhibitor and the one or more second agents are administered simultaneously.


In certain embodiments, the EHMT2 inhibitor and the one or more additional treatment modalities are administered sequentially. For example, in certain embodiments, the EHMT2 inhibitor and the one or more second agents are administered sequentially.


In certain embodiments, the EHMT2 inhibitor and the one or more additional treatment modalities are administered in alternation. For example, in certain embodiments, the EHMT2 inhibitor and the one or more second agents are administered in alternation.


In certain embodiments, the one or more additional treatment modalities administered prior to the EHMT2 inhibitor. For example, in certain embodiments, the one or more second agents is administered prior to the EHMT2 inhibitor.


In certain embodiments, the EHMT2 inhibitor is administered prior to the one or more additional treatment modalities. For example, in certain embodiments, the EHMT2 inhibitor is administered prior to the one or more second agents.


In certain embodiments, the therapeutically effective amount of the EHMT2 inhibitor is an amount sufficient to achieve a desired clinical effect, e.g., an alleviation of a symptom of the immune-mediated disease in the subject treated with the EHMT2 inhibitor, an inhibition of disease progression, a reversal of a symptom or of all symptoms, or an increase in symptom-free or progression-free time windows, or an elongation of symptom-free or progression-free time periods, a prevention of onset of symptoms, and other clinical effects known to those of skill in the art to be desirable in the treatment of immune-mediated diseases.


In certain embodiments, the therapeutically effective amount of the EHMT2 inhibitor is an amount sufficient to sensitize the subject to a treatment by administration of the one or more treatment modalities, e.g., simultaneously with, subsequent to, or prior to the administration of the EHMT2 inhibitor. For example, in certain embodiments, the therapeutically effective amount of the EHMT2 inhibitor is an amount sufficient to sensitize the subject to a treatment by administration of the one or more second agents, e.g., simultaneously with, subsequent to, or prior to the administration of the EHMT2 inhibitor.


In certain embodiments, the therapeutically effective amount of the EHMT2 inhibitor is an amount sufficient to sensitize the subject to a subsequent treatment by administration of the one or more treatment modalities. For example, in certain embodiments, the therapeutically effective amount of the EHMT2 inhibitor is an amount sufficient to sensitize the subject to a subsequent treatment by administration of the one or more second agents.


In certain embodiments, the amount of the one or more treatment modalities that is therapeutically effective is smaller than the amount of the same agent that is therapeutically effective in a subject not administered with the EHMT2 inhibitor. For example, in certain embodiments, the amount of the one or more second agents that is therapeutically effective is smaller than the amount of the same agent that is therapeutically effective in a subject not administered with the EHMT2 inhibitor.


In certain embodiments, the EHMT2 inhibitor is administered prior to the administration of a combination of the EHMT2 inhibitor and the one or more treatment modalities. For example, in certain embodiments, the EHMT2 inhibitor is administered prior to the administration of a combination of the EHMT2 inhibitor and the one or more second agents.


In certain embodiments, the EHMT2 inhibitor is administered after the administration of a combination of the EHMT2 inhibitor and the one or more treatment modalities. For example, in certain embodiments, the EHMT2 inhibitor is administered after the administration of a combination of the EHMT2 inhibitor and the one or more second agents.


In certain embodiments, the compounds of any of Formulae (I), (I′), (I′), (II″), (III″), (I′″), (II′″), and (III′″) inhibit a kinase with an enzyme inhibition IC50 value of about 100 nM or greater, 1 μM or greater, 10 μM or greater, 100 μM or greater, or 1000 μM or greater.


In certain embodiments, the compounds of any of Formulae (I), (I′), (I′), (II″), (III″), (I′″), (II′″), and (III′″) inhibit a kinase with an enzyme inhibition IC50 value of about 1 mM or greater.


In certain embodiments, the compounds of any of Formulae (I), (I′), (I′), (II″), (III″), (I′″), (II′″), and (III′″) inhibit a kinase with an enzyme inhibition IC50 value of 1 μM or greater, 2 μM or greater, 5 μM or greater, or 10 μM or greater, wherein the kinase is one or more of the following: AbI, AurA, CHK1, MAP4K, IRAK4, JAK3, EphA2, FGFR3, KDR, Lck, MARK1, MNK2, PKCb2, SIK, and Src.


Also provided herein are pharmaceutical compositions comprising one or more pharmaceutically acceptable carriers and a combination comprising one or more compounds of any of the Formulae (I), (I′), (I′), (II″), (III″), (I′″), (II′″), and (III′″) described herein and a second agent.


Compounds that are suitable for the methods of the disclosure include subsets of the compounds of Formulae (I), (I′), (I′), (II″), (III″), (I′″), (II′″) and specific examples that are described in U.S. Application Nos. 62/323,602, 62/348,837, 62/402,997, 62/402,863, 62/509,620, 62/436,139, 62/517,840, 62/573,442, 62/681,804, 62/746,252, and 62/746,495, and Ser. No. 15/601,888, and PCT Application Nos. PCT/US2017/027918, PCT/US2017/054468, PCT/US2017/067192, PCT/US2018/056333, and PCT/US2018/056428, the contents of each of which are incorporated herein by reference in their entireties


In some aspects, the present disclosure provides an EHMT2 inhibitor described herein for preventing or treating a disease or disorder associated with overexpression of EHMT2.


In some aspects, the present disclosure provides an EHMT2 inhibitor described hereinfor use in combination with one or more second therapeutic agents for preventing or treating a disease or disorder associated with overexpression of EHMT2.


In some aspects, the present disclosure provides an EHMT2 inhibitor described hereinfor preventing or treating an immune-mediated disease.


In some aspects, the present disclosure provides an EHMT2 inhibitor described herein for use in combination with one or more second therapeutic agents for preventing or treating an immune-mediated disease.


In some aspects, the present disclosure provides use of an EHMT2 inhibitor described herein in the manufacture of a medicament for preventing or treating a disease or disorder associated with overexpression of EHMT2.


In some aspects, the present disclosure provides use of an EHMT2 inhibitor described herein in the manufacture of a medicament for use in combination with one or more second therapeutic agents for preventing or treating a disease or disorder associated with overexpression of EHMT2.


In some aspects, the present disclosure provides use of an EHMT2 inhibitor described herein in the manufacture of a medicament for preventing or treating an immune-mediated disease.


In some aspects, the present disclosure provides use of an EHMT2 inhibitor described herein in the manufacture of a medicament for use in combination with one or more second therapeutic agents for preventing or treating an immune-mediated disease.


Unless otherwise stated, any description of a method of treatment includes use of the compounds to provide such treatment or prophylaxis as is described herein, as well as use of the compounds to prepare a medicament to treat or prevent such condition. The treatment includes treatment of human or non-human animals including rodents and other disease models. Methods described herein may be used to identify suitable candidates for treating or preventing EHMT-mediated disorders. For example, the disclosure also provides methods of identifying an inhibitor of EHMT1 or EHMT2 or both.


For example, the method further comprises the steps of performing an assay to detect the degree of histone methylation by EHMT1 or EHMT2 in a sample comprising blood cells from a subject in need thereof.


In some embodiments, performing the assay to detect methylation of H3-K9 in the histone substrate comprises measuring incorporation of labeled methyl groups.


In some embodiments, the labeled methyl groups are isotopically labeled methyl groups.


In some embodiments, performing the assay to detect methylation of H3-K9 in the histone substrate comprises contacting the histone substrate with an antibody that binds specifically to dimethylated H3-K9.


Still another aspect of the disclosure is a method of inhibiting conversion of H3-K9 to dimethylated H3-K9. The method comprises the step of contacting a mutant EHMT, the wild-type EHMT, or both, with a histone substrate comprising H3-K9 and an effective amount of an EHMT2 inhibitor disclosed herein and an effective amount of a second agent, wherein the combination of the EHMT2 inhibitor and the second agent inhibits histone methyltransferase activity of EHMT, thereby inhibiting conversion of H3-K9 to dimethylated H3-K9.


Further, the compounds or methods described herein can be used for research (e.g., studying epigenetic enzymes) and other non-therapeutic purposes.


Unless otherwise defined, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure belongs. In the specification, the singular forms also include the plural unless the context clearly dictates otherwise. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present disclosure, suitable methods and materials are described below. All publications, patent applications, patents and other references mentioned herein are incorporated by reference. The references cited herein are not admitted to be prior art to the claimed invention. In the case of conflict, the present specification, including definitions, will control. In addition, the materials, methods and examples are illustrative only and are not intended to be limiting. In the case of conflict between the chemical structures and names of the compounds disclosed herein, the chemical structures will control.


Other features and advantages of the disclosure will be apparent from the following figures, detailed description and claims.





BRIEF DESCRIPTION OF DRAWINGS

The patent or application file contains at least one drawing executed in color. Copies of this patent or patent application publication with color drawing(s) will be provided by the Office upon request and payment of the necessary fee.


The above and further features will be more clearly appreciated from the following detailed description when taken in conjunction with the accompanying drawings.



FIG. 1 shows the effect of Compound 571 on cell polarization. Panel A shows the effect on T regulatory (Treg) cell polarization. Panel B shows the effect on TH17 cell polarization. In the Figure, the number 1-5 represent the following. Panel A 1:Treg in cell culture medium; 2: Treg in DMSO 3: Compound 571, 10 nM; 4: Compound 571, 100 nM; 5: Compound 571, 1 uM. Panel B 1:Th17 in cell culture medium; 2: Th17 in DMSO 3: Compound 571, 10 nM; 4: Compound 571, 100 nM; 5: Compound 571, 1 uM.



FIG. 2 shows the effect of Compound 205 on TH17 cell polarization. In the Figure, the number 1-7 represent the following: 1:Th17 in DMSO; 2: Compound 205, 62.5 nM; 3: Compound 205, 125 nM; 4: Compound 205, 250 nM; 5: Compound 205, 500 nM; 6: Compound 205, 1000 nM; 7: Compound 205, 2000 nM.



FIG. 3 is a graph showing the dose-dependent increase in Treg polarization and dose-dependent decrease in H3K9me2 upon treatment with G9a inhibitor Compound D6.



FIGS. 4A and 4B are a set of graphs showing increased Treg polarization and decreased H3K9me2 upon treatment with G9a inhibitors Compound A75, Compound D6, and Compound 205.



FIG. 5 is a graph showing dose-dependent increase in Th17 polarization and dose-dependent decrease in H3K9me2 upon treatment with G9a inhibitor Compound D6.



FIGS. 6A and 6B are a set of graphs showing Th17 polarization and decreased H3K9me2 upon treatment with G9a inhibitors Compound A75, Compound D6, and Compound 205.





DETAILED DESCRIPTION

In some aspects, the present disclosure provides a method of preventing or treating a disease or disorder associated with overexpression of EHMT2, comprising administering to a subject in need thereof a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor. In some embodiments, the method further comprises administering to the subject one or more additional treatment modalities in a therapeutically effective amount, wherein the one or more additional treatment modalities comprises one or more second therapeutic agents.


In some aspects, the present disclosure provides a method of preventing treating an immune-mediated disease, comprising administering to a subject in need thereof a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor. In some embodiments, the method further comprises administering to the subject one or more additional treatment modalities in a therapeutically effective amount, wherein the one or more additional treatment modalities comprises one or more second therapeutic agents.


In further aspects, the present disclosure provides method of treating a disease or disorder associated with overexpression of EHMT2 (e.g., an immune-mediated disease or disorder), comprising administering to a subject in need thereof (a) a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor, and (b) one or more second agents in a therapeutically effective amount.


In certain embodiments, the second agent comprises a standard-of-care treatment modality for rheumatoid arthritis, standard-of-care treatment modality for multiple sclerosis, standard-of-care treatment modality for psoriasis, standard-of-care treatment modality for psoriatic disorders, a standard-of-care treatment modality for psoriatic arthritis, a standard-of-care treatment modality for inflammatory bowel disease, or a combination thereof.


In certain embodiments, an immune-mediated disease is an immune-mediated inflammatory disease or an autoimmune disease or disorder. Non-limiting examples of such diseases or disorders include multiple sclerosis, psoriasis, inflammatory bowel disease, such as ulcerative colitis, Crohn's disease, microscopic colitis (collagenous colitis and lymphocytic colitis), diversion colitis, Behçet's disease, and indeterminate colitis, rheumatoid arthritis and polyarthritis, ankylosing spondylitis, local and systemic scleroderma, systemic lupus erythematosus, discoid lupus erythematosus, cutaneous lupus, cutaneous lupus erythematosus including chilblain lupus erythematosus, lupus nephritis, discoid lupus, subacute cutaneous lupus erythematosus, dermatomyositis, polymyositis, idiopathic myxedema, Hashimoto's disease, Guillain-Barre' syndrome, Grave's disease, myasthenia gravis, Sjogren's syndrome, nodular panarteritis, autoimmune enteropathy, uveitis, autoimmune oophoritis, chronic immune thrombocytopenic purpura, colitis, diabetes, psoriasis, pemphigus vulgaris, proliferative glomerulonephritis, Wiskott-Aldrich syndrome, autoimmune lymphoproliferative syndrome, chronic arthritis, inflammatory chronic rhinosinusitis, colitis, celiac disease, inflammatory bowel disease, Barrett's esophagus, inflammatory gastritis, autoimmune nephritis, autoimmune vasculitis, autoimmune hepatitis, autoimmune carditis, autoimmune encephalitis, and autoimmune mediated hematological disease.


Some aspects of this disclosure provide methods for modulating T cell activity, e.g., in vitro or in vivo, by inhibiting EHMT2 activity in a target T cell or target T cell population. In some embodiments, the method comprises contacting a target T cell, e.g., a T regulatory (Treg) cell or a Th17 cell or cell population with an EHMT2 inhibitor, e.g., an EHMT2 inhibitor provided herein. In some embodiments, the method comprises contacting the target T cell or T cell population in vivo, e.g., by administering the EHMT2 inhibitor to a subject harboring the target T cell or T cell population. In some embodiments, the method comprises administering the EHMT2 inhibitor in an amount effective to induce or increase polarization and/or differentiation of a target T cell or T cell population, e.g., of Treg and/or Th17 cells in a subject having an immune-mediated disease. In some embodiments, the method comprises administering the EHMT2 inhibitor in an amount effective to reduce or the number of pathogenic T cells or to keep the number of pathogenic T cells below a threshold level associated with an immune-mediated disease.


Without wishing to be bound by any particular theory, it is believed that pathogenesis in certain immune-mediated diseases, e.g., in inflammatory diseases such as, for example, inflammatory bowel syndrome, is associated with dysregulated T cell responses, e.g., with dysregulated CD4+ Th cell responses. In addition, it is believed that pharmacological inhibition of EHMT2 expression, e.g., by an EHMT2 inhibitory compound provided herein, and the resulting decrease or loss in histone 3 lysine 9 dimethylation (H3K9me2), promotes differentiation of naive T cells to Treg and/or Th17 cells, and/or reduces the number of pathogenic T cells, e.g., T cells involved in the disease-associated, dysregulated T cell response. Accordingly, some aspects of the present disclosure provide methods for treating an immune-mediated disease characterized by a dysregulated T cell response, by administering to a subject having such a disease an amount of an EHMT2 inhibitor, e.g., an EHMT2 inhibitor provided herein, effective to promote differentiation of naïve T cells to Treg and/or Th17 cells, and/or to reduce the number of pathogenic T cells, e.g., T cells involved in the disease-associated, dysregulated T cell response. In some embodiments, the EHMT2 inhibitor is administered in combination with one or more second agents as described herein. Exemplary suitable methods for detecting pathogenic and non-pathogenic T cells are described herein, and additional suitable methods will be apparent to the skilled artisan based on the instant disclosure. The disclosure is not limited in this respect.


In certain embodiments, for the methods disclosed herein, the EHMT2 inhibitor is a compound of Formula (I) below:




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or a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • ring A is phenyl or a 5- or 6-membered heteroaryl;
    • X1 is N, CR2, or NR2′ as valency permits;
    • X2 is N, CR3, or NR3′ as valency permits;
    • X3 is N, CR4, or NR4′ as valency permits;
    • X4 is N or CR5, or X4 is absent such that ring A is a 5-membered heteroaryl containing at least one N atom;
    • X5 is C or N as valency permits;
    • B is absent or a ring structure selected from the group consisting of C6-C10 aryl, C3-C10 cycloalkyl, 5- to 10-membered heteroaryl, and 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S;
    • T is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, oxo; or C1-C6 alkoxy when B is present; or T is H and n is 0 when B is absent; or T is C1-C6 alkyl optionally substituted with (R7)n when B is absent; or when B is absent, T and R1 together with the atoms to which they are attached optionally form a 4-7 membered heterocycloalkyl or 5-6 membered heteroaryl, each of which is optionally substituted with (R7)n;
    • R1 is H or C1-C4 alkyl;
    • each of R2, R3, and R4, independently is selected from the group consisting of H, halo, cyano, C1-C6 alkoxyl, C6-C10 aryl, NRaRb, C(O)NRaRb, NRaC(O)Rb, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, and C1-C6 alkyl, wherein C1-C6 alkoxyl and C1-C6 alkyl are optionally substituted with one or more of halo, ORa, or NRaRb, in which each of Ra and Rb independently is H or C1-C6 alkyl, or R3 is -Q1-T1, in which Q1 is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T1 is H, halo, cyano, NR8R9, C(O)NR8R9, OR8, OR9, or RS1, in which RS1 is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1 is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R9, —SO2R8, —SO2N(R8)2, —NR8C(O)R9, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; or when ring A is a 5-membered heteroaryl containing at least one N atom, R4 is a spiro-fused 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S;
    • each of R2′, R3′ and R4′ independently is H or C1-C3 alkyl; R5 is selected from the group consisting of H, F, Br, cyano, C1-C6 alkoxyl, C6-C10 aryl, NRaRb, C(O)NRaRb, NRaC(O)Rb, C3-C8 cycloalkyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, C1-C6 alkyl optionally substituted with one or more of halo, ORa or NRaRb, and C2-C6 alkynyl optionally substituted with 4- to 12-membered heterocycloalkyl; wherein said C3-C8 cycloalkyl or 4- to 12-membered heterocycloalkyl are optionally substituted with one or more of halo, C(O)Ra, ORa, NRaRb, 4- to 7-membered heterocycloalkyl, —C1-C6 alkylene-4- to 7-membered heterocycloalkyl, or C1-C4 alkyl optionally substituted with one or more of halo, ORa or NRaRb, in which each of Ra and Rb independently is H or C1-C6 alkyl; or
    • R5 and one of R3 or R4 together with the atoms to which they are attached form phenyl or a 5- or 6-membered heteroaryl; or R5 and one of R3′ or R4′ together with the atoms to which they are attached form a 5- or 6-membered heteroaryl, in which the phenyl or 5- or 6-membered heteroaryl as formed is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl;
    • R6 is absent when X5 is N and ring A is a 6-membered heteroaryl; or R6 is -Q1-T1, in which Q1 is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T1 is H, halo, cyano, NR8R9, C(O)NR8R9, C(O)R9, OR8, OR9, or RS1, in which RS1 is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1 is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R9, —SO2R8, —SO2N(R8)2, —NR8C(O)R9, NR8R9, or C1-C6 alkoxyl; and R6 is not NR8C(O)NR12R13; or
    • R6 and one of R2 or R3 together with the atoms to which they are attached form phenyl or a 5- or 6-membered heteroaryl; or R6 and one of R2′ or R3′ together with the atoms to which they are attached form a 5- or 6-membered heteroaryl, in which the phenyl or 5- or 6-membered heteroaryl as formed is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl, oxo (═O), C1-C3 alkoxyl, or -Q1-T1;
    • each R7 is independently oxo (═O) or -Q2-T2, in which each Q2 independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T2 independently is H, halo, cyano, OR10, OR11, C(O)R11, NR10R11, C(O)NR10R11, NR10C(O)R11, 5- to 10-membered heteroaryl, C3-C8 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the 5- to 10-membered heteroaryl, C3-C8 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl optionally substituted with NRxRy, hydroxyl, oxo, N(R8)2, cyano, C1-C6 haloalkyl, —SO2R8, or C1-C6 alkoxyl, each of Rx and Ry independently being H or C1-C6 alkyl; and R7 is not H or C(O)OR9;
    • each R8 independently is H or C1-C6 alkyl;
    • each R9 is independently -Q3-T3, in which Q3 is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T3 is H, halo, OR12, OR13, NR12R13, NR12C(O)R13, C(O)NR12R13, C(O)R13, S(O)2R13, S(O)2NR12R13, or RS2, in which RS2 is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS2 is optionally substituted with one or more -Q4-T4, wherein each Q4 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T4 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORc, C(O)Rc, S(O)2Rc, NRcRd, C(O)NRcRd, and NRcC(O)Rd, each of Rc and Rd independently being H or C1-C6 alkyl; or -Q4-T4 is oxo; or
    • R8 and R9 taken together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, which is optionally substituted with one or more of -Q5-T5, wherein each Q5 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORe, C(O)Re, S(O)2Re, S(O)2NReRf, NReRf, C(O)NReRf, and NReC(O)Rf, each of Re and Rf independently being H or C1-C6 alkyl; or -Q5-T5 is oxo;
    • R10 is selected from the group consisting of H and C1-C6 alkyl;
    • R11 is -Q6-T6, in which Q6 is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T6 is H, halo, ORg, NRgRh, NRgC(O)Rh, C(O)NRgRh, C(O)Rg, S(O)2Rg, or RS3, in which each of Rg and Rh independently is H, phenyl, C3-C8 cycloalkyl, or C1-C6 alkyl optionally substituted with C3-C8 cycloalkyl, or Rg and Rh together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and RS3 is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3 is optionally substituted with one or more -Q7-T7, wherein each Q7 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T7 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORj, C(O)Rj, NRjRk, C(O)NRjRk, S(O)2Rj, and NRjC(O)Rk, each of Rj and Rk independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q7-T7 is oxo; or
    • R10 and R11 taken together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, which is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, or C1-C6 alkoxyl;
    • R12 is H or C1-C6 alkyl;
    • R13 is C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, each of which is optionally substituted with one or more -Q8-T8, wherein each Q8 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T8 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and 5- to 6-membered heteroaryl; or -Q8-T8 is oxo; and n is 0, 1, 2, 3, or 4.


The compounds of Formula (I) may have one or more of the following features when applicable.


In some embodiments, the EHMT2-inhibitor is not a compound selected from the group consisting of:

  • 2-cyclohexyl-6-methoxy-N-[1-(1-methylethyl)-4-piperidinyl]-7-[3-(1-pyrrolidinyl)propoxy]-4-quinazolinamine;
  • N-(1-isopropylpiperidin-4-yl)-6-methoxy-2-(4-methyl-1,4-diazepan-1-yl)-7-(3-(piperidin-1-yl)propoxy)quinazolin-4-amine;
  • 2-(4,4-difluoropiperidin-1-yl)-N-(1-isopropylpiperidin-4-yl)-6-methoxy-7-(3-(pyrrolidin-1-yl)propoxy)quinazolin-4-amine;
  • 2-(4-isopropyl-1,4-diazepan-1-yl)-N-(1-isopropylpiperidin-4-yl)-6-methoxy-7-(3-(piperidin-1-yl)propoxy)quinazolin-4-amine;
  • 4-(((2-((1-acetylindolin-6-yl)amino)-6-(trifluoromethyl)pyrimidin-4-yl)amino)methyl)benzenesulfonamide;
  • 5-bromo-N4-(4-fluorophenyl)-N2-(4-methoxy-3-(2-(pyrrolidin-1-yl)ethoxy)phenyl)pyrimidine-2,4-diamine;
  • N2-(4-methoxy-3-(2-(pyrrolidin-1-yl)ethoxy)phenyl)-N4-(5-(tert-pentyl)-1H-pyrazol-3-yl)pyrimidine-2,4-diamine;
  • 4-((2,4-dichloro-5-methoxyphenyl)amino)-2-((3-(2-(pyrrolidin-1-yl)ethoxy)phenyl)amino)pyrimidine-5-carbonitrile;
  • N-(naphthalen-2-yl)-2-(piperidin-1-ylmethoxy)pyrimidin-4-amine;
  • N-(3,5-difluorobenzyl)-2-(3-(pyrrolidin-1-yl)propyl)pyrimidin-4-amine;
  • N-(((4-(3-(piperidin-1-yl)propyl)pyrimidin-2-yl)amino)methyl)benzamide;
  • N-(2-((2-(3-(dimethylamino)propyl)pyrimidin-4-yl)amino)ethyl)benzamide; and
  • 2-(hexahydro-4-methyl-1H-1,4-diazepin-1-yl)-6,7-dimethoxy-N-[1-(phenylmethyl)-4-piperidinyl]-4-quinazolinamine.


In some embodiments, when T is a bond, B is substituted phenyl, and R6 is NR8R9, in which R9 is -Q3-RS2, and RS2 is optionally substituted 4- to 7-membered heterocycloalkyl or a 5- to 6-membered heteroaryl, then B is substituted with at least one substituent selected from (i) -Q2-OR11 in which R11 is -Q6-RS3 and Q6 is optionally substituted C2-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker and (ii) -Q2-NR10R11 in which R11 is -Q6-RS3.


In some embodiments, when T is a bond and B is optionally substituted phenyl, then R6 is not OR9 or NR8R9 in which R9 is optionally substituted naphthyl.


In some embodiments, when T is a bond and B is optionally substituted phenyl, naphthyl, indanyl or 1,2,3,4-tetrahydronaphthyl, then R6 is not NR8R9 in which R9 is optionally substituted phenyl, naphthyl, indanyl or 1,2,3,4-tetrahydronaphthyl.


In some embodiments, when T is a bond and B is optionally substituted phenyl or thiazolyl, then R6 is not optionally substituted imidazolyl, pyrazolyl, pyridyl, pyrimidyl, or NR8R9 in which R9 is optionally substituted imidazolyl or 6- to 10-membered heteroaryl.


In some embodiments, when T is a C1-C6 alkylene linker and B is absent or optionally substituted C6-C10 aryl or 4- to 12-membered heterocycloalkyl; or when T is a bond and B is optionally substituted C3-C10 cycloalkyl or 4- to 12-membered heterocycloalkyl, then R6 is not NR8C(O)R13.


In some embodiments, when X1 and X3 are N, X2 is CR3, X4 is CR5, X5 is C, R5 is 4- to 12-membered heterocycloalkyl substituted with one or more C1-C6 alkyl, and R6 and R3 together with the atoms to which they are attached form phenyl which is substituted with one or more of optionally substituted C1-C3 alkoxyl, then B is absent, C6-C10 aryl, C3-C10 cycloalkyl, or 5- to 10-membered heteroaryl.


In some embodiments, when X2 and X3 are N, X1 is CR2, X4 is CR5, X5 is C, R5 is C3-C8 cycloalkyl or 4- to 12-membered heterocycloalkyl, each optionally substituted with one or more C1-C6 alkyl, and R6 and R2 together with the atoms to which they are attached form phenyl which is substituted with one or more of optionally substituted C1-C3 alkoxyl, then B is absent, C6-C10 aryl, C3-C10 cycloalkyl, or 5- to 10-membered heteroaryl.


In some embodiments, ring A is a 6-membered heteroaryl, at least one of X1, X2, X3 and X4 is N and X5 is C.


In some embodiments, ring A is a 6-membered heteroaryl, two of X1, X2, X3 and X4 are N and X5 is C.


In some embodiments, R6 and one of R2 or R3 together with the ring A to which they are attached form a 6,5-fused bicyclic heteroaryl; or R6 and one of R2′ or R3′ together the ring A to which they are attached form a 6,5-fused bicyclic heteroaryl.


In some embodiments, at least one of R6, R2, R3, and R4 is not H.


In some embodiments, when one or more of R2′, R3′, and R4′ are present, at least one of R6, R2′, R3′, and R4′ is not H.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (II):




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wherein

    • ring B is phenyl or pyridyl,
    • one or both of X1 and X2 are N while X3 is CR4 and X4 is CR5 or one or both of X1 and X3 are N while X2 is CR3 and X4 is CR5; and
    • n is 1, 2, or 3.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (IIa1), (IIa2), (IIa3), (IIa4), or (IIa5):




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In some embodiments, at most one of R3 and R5 is not H.


In some embodiments, the EHMNT2 inhibitor is a compound of Formula (IIb1), (IIb2), (IIb3), (IIb4), or (IIb5).




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In some embodiments, at most one of R3, R4 and R5 is not H.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (IIc1), (IIc2), (IIc3), (IIc4), or (IIc5):




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In some embodiments, at most one of R4 and R5 is not H.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (IId1), (IId2), (IId3), (IId4), or (IId5):




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In some embodiments, at most one of R2, R4, and R5 is not H.


In some embodiments, ring A is a 5-membered heteroaryl.


In some embodiments, the EHMNT2 inhibitor is a compound of Formula (III):




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wherein

    • ring B is phenyl or pyridyl,
    • at least one of X2 and X3 is N; and
    • n is 1 or 2.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (IIIa):




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In some embodiments, at most one of R4′ and R2 is not H.


In some embodiments, the optionally substituted 6,5-fused bicyclic heteroaryl contains 1-4 N atoms.


In some embodiments, T is a bond and ring B is phenyl or pyridyl.


In some embodiments, n is 1 or 2.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (IV):




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wherein ring B is C3-C6 cycloalkyl;

    • each of R20, R21, R22 and R23 independently is H, halo, C1-C3 alkyl, hydroxyl, or C1-C3 alkoxyl; and
    • n is 1 or 2.


In some embodiments, ring B is cyclohexyl.


In some embodiments, R1 is H or CH3.


In some embodiments, n is 1 or 2, and at least one of R7 is -Q2-OR11 in which R11 is -Q6-RS3 and Q6 is optionally substituted C2-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker.


In some embodiments, n is 1 or 2, and at least one of R7 is -Q2-NR10R11 in which R11 is -Q6-RS3.


In some embodiments, Q6 is C2-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with a hydroxyl and RS3 is 4- to 7-membered heterocycloalkyl optionally substituted with one or more -Q7-T7.


In some embodiments, Q6 is C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with a hydroxyl and RS3 is C3-C6 cycloalkyl optionally substituted with one or more

    • -Q7-T7.


In some embodiments, each Q7 is independently a bond or a C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker and each T7 is independently H, halo, C1-C6 alkyl, or phenyl.


In some embodiments, Q2 is a bond or a C1-C4 alkylene, C2-C4 alkenylene, or C2-C4 alkynylene linker.


In some embodiments, at least one of R7 is




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In some embodiments, n is 2 and the compound further comprises another R′ selected from halo and methoxy.


In some embodiments, ring B is selected from phenyl, pyridyl, and cyclohexyl, and the halo or methoxy is at the para-position to NR1.


In some embodiments, R6 is NR8R9.


In some embodiments, R9 is -Q3-T3, in which T3 is OR12, NR12C(O)R13, C(O)R13, C(O)NR12R13, S(O)2NR12R13, or RS2.


In some embodiments, Q3 is C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with a hydroxyl.


In some embodiments, RS2 is C3-C6 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl, or a 5- to 10-membered heteroaryl, and RS2 is optionally substituted with one or more -Q4-T4.


In some embodiments, each Q4 is independently a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker optionally substituted with one or more of hydroxyl and halo, and each T4 is independently H, halo, C1-C6 alkyl, or phenyl; or -Q4-T4 is oxo.


In some embodiments, R6 or NR8R9 is selected from the group consisting of:




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In some embodiments, B is absent and T is unsubstituted C1-C6 alkyl or T is C1-C6 alkyl substituted with at least one R7.


In some embodiments, B is 4- to 12-membered heterocycloalkyl and T is unsubstituted C1-C6 alkyl.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (V):




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wherein

    • ring B is absent or C3-C6 cycloalkyl;
    • X3 is N or CR4 in which R4 is H or C1-C4 alkyl;
    • R1 is H or C1-C4 alkyl;
    • or when B is absent, T and R1 together with the atoms to which they are attached optionally form a 4-7 membered heterocycloalkyl or 5-6 membered heteroaryl, each of which is optionally substituted with (R7)n; or when B is absent, T is H and n is 0;
    • each R7 is independently oxo (═O) or -Q2-T2, in which each Q2 independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T2 independently is H, halo, OR10, OR11, C(O)R11, NR10R11, C(O)NR10R11, NR10C(O)R11, C3-C8 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C3-C8 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl optionally substituted with NRxRy, hydroxyl, oxo, N(R8)2, cyano, C1-C6 haloalkyl, —SO2R8, or C1-C6 alkoxyl, each of Rx and Ry independently being H or C1-C6 alkyl; and R7 is not H or C(O)OR9;
    • R5 is selected from the group consisting of C1-C6 alkyl, C3-C8 cycloalkyl and 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, wherein the C3-C8 cycloalkyl and 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of 4- to 7-membered heterocycloalkyl, —C1-C6 alkylene-4- to 7-membered heterocycloalkyl, —C(O)C1-C6 alkyl or C1-C6 alkyl optionally substituted with one or more of halo or ORa;
    • R9 is -Q3-T3, in which Q3 is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T3 is 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, optionally substituted with one or more -Q4-T4, wherein each Q4 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T4 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORc, C(O)Rc, S(O)2Rc, NRcRd, C(O)NRcRd, and NRcC(O)Rd, each of Rc and Rd independently being H or C1-C6 alkyl; or -Q4-T4 is oxo; and
    • n is 0, 1 or 2.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (VI):




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wherein

    • R5 and R6 are independently selected from the group consisting of C1-C6 alkyl and NR8R9, or R6 and R3 together with the atoms to which they are attached form phenyl or a 5- or 6-membered heteroaryl.


In some embodiments, R6 is methyl.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (VII):




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wherein m is 1 or 2 and n is 0, 1, or 2.


In some embodiments, both of X1 and X3 are N while X2 is CR3 and X4 is CR5.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (VIIIa):




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wherein

    • X1 is N or CR2;
    • X2 is N or CR3;
    • X3 is N or CR4;
    • X4 is N or CR5;
    • R2 is selected from the group consisting of H, C3-C8 cycloalkyl, and C1-C6 alkyl optionally substituted with one or more of halo, ORa, or NRaRb;
    • each of R3 and R4 is H; and
    • R5 are independently selected from the group consisting of H, C3-C8 cycloalkyl, and C1-C6 alkyl optionally substituted with one or more of halo or ORa; or
    • R5 and one of R3 or R4 together with the atoms to which they are attached form phenyl or a 5- or 6-membered heteroaryl; or R5 and one of R3′ or R4′ together with the atoms to which they are attached form a 5- or 6-membered heteroaryl, in which the phenyl or 5- or 6-membered heteroaryl as formed is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl; and
    • wherein at least one of R2 or R5 are not H.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (VIIIb):




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wherein

    • X1 is N or CR2;
    • X2 is N or CR3;
    • X3 is N or CR4;
    • X4 is N or CR5;
    • R2 is selected from the group consisting of H, C3-C8 cycloalkyl, and C1-C6 alkyl each of R3 and R4 is H; and
    • R5 is selected from the group consisting of H, C3-C8 cycloalkyl, and C1-C6 alkyl; or
    • R5 and one of R3 or R4 together with the atoms to which they are attached form phenyl or a 5- or 6-membered heteroaryl; or R5 and one of R3′ or R4′ together with the atoms to which they are attached form a 5- or 6-membered heteroaryl, in which the phenyl or 5- or 6-membered heteroaryl as formed is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl; and
    • wherein at least one of R2 or R5 are not H.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (VIIIc):




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wherein

    • X1 is N or CR2;
    • X2 is N or CR3;
    • X3 is N or CR4;
    • X4 is N or CR5;
    • R2 is selected from the group consisting of H, C3-C8 cycloalkyl, and C1-C6 alkyl each of R3 and R4 is H; and
    • R5 is selected from the group consisting of H, C3-C8 cycloalkyl, and C1-C6 alkyl; or
    • R5 and one of R3 or R4 together with the atoms to which they are attached form phenyl or a 5- or 6-membered heteroaryl; or R5 and one of R3′ or R4′ together with the atoms to which they are attached form a 5- or 6-membered heteroaryl, in which the phenyl or 5- or 6-membered heteroaryl as formed is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl; and
    • wherein at least one of R2 or R5 are not H.


In some embodiments, the EHMT2 inhibitor is a compound of (IX):




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or a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • X6 is N or CH;
    • X7 is N or CH;
    • X3 is N or CR4;
    • R4, independently is selected from the group consisting of H, halo, cyano, C1-C6 alkoxyl, C6-C10 aryl, NRaRb, C(O)NRaRb, NRaC(O)Rb, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, and C1-C6 alkyl, wherein C1-C6 alkoxyl and C1-C6 alkyl are optionally substituted with one or more of halo, ORa, or NRaRb, in which each of Ra and Rb independently is H or C1-C6 alkyl;
    • each R9 is independently -Q3-T3, in which Q3 is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T3 is H, halo, OR12, OR13, NR12R13, NR12C(O)R13, C(O)NR12R13, C(O)R13, S(O)2R13, S(O)2NR12R13, or RS2, in which RS2 is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS2 is optionally substituted with one or more -Q4-T4, wherein each Q4 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T4 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORc, C(O)Rc, S(O)2Rc, NRcRd, C(O)NRcRd, and NRcC(O)Rd, each of Rc and Rd independently being H or C1-C6 alkyl; or -Q4-T4 is oxo; or
    • R12 is H or C1-C6 alkyl;
    • R13 is C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, each of which is optionally substituted with one or more -Q8-T′, wherein each Q8 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T8 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and 5- to 6-membered heteroaryl; or -Q8-T8 is oxo;
    • R15 is C1-C6 alkyl, NHR17, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or 5- to 10-membered heteroaryl, wherein each of said C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl, and 5- to 10-membered heteroaryl is optionally substituted with one or more -Q9-T9, wherein each Q9 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T9 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and 5- to 6-membered heteroaryl; or -Q9-T9 is oxo;
    • R16 is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, each of which is optionally substituted with one or more -Q10-T10, wherein each Q10 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T10 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and 5- to 6-membered heteroaryl; or -Q10-T10 is oxo;
    • R17 is H or C1-C6 alkyl; and
    • v is 0, 1, or 2.


In some embodiments, each T3 independently is OR12 or OR13.


In some embodiments, each Q3 independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with a hydroxyl.


In some embodiments, R15 is C1-C6 alkyl, NHR17, or 4- to 12-membered heterocycloalkyl.


In some embodiments, R16 is C1-C6 alkyl or 4- to 12-membered heterocycloalkyl, each optionally substituted with one or more-Q10-T10.


In some embodiments, each T10 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, and 4- to 7-membered heterocycloalkyl.


In some embodiments, each Q10 independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker optionally substituted with a hydroxyl.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (X):




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wherein X3 is N or CR4, wherein R4 is selected from the group consisting of H, halo, and cyano.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (Xa), (Xb), (Xc), (Xd), (Xe), (Xf), or (Xg):




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In some embodiments, at least one of X1, X2, X3 and X4 is N.


In some embodiments, X2 and X3 is CH, and X1 and X4 is N.


In some embodiments, X2 and X3 is N, X1 is CR2, and X4 is CR5.


In some embodiments, R6 is NR8R9 and R5 is C1-6 alkyl or R5 and R3 together with the atoms to which they are attached form phenyl or a 5- to 6-membered heteroaryl ring.


In certain embodiments, for the methods disclosed herein, the EHMT2 inhibitor is a compound of Formula (I′):




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    • or a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • X1a is O, S, CR1aR11a, or NR1a′ when custom-character is a single bond, or X1a is N when custom-character is a double bond;

    • X2a is N or CR2a when custom-character is a double bond, or X2a is NR2a′ when custom-character a single bond;

    • X3a is N or C; when X3a is N, custom-character is a double bond and custom-character is a single bond, and when X3a is C, custom-character is a single bond and custom-character is a double bond;

    • each of R1a, R2a and R11a, independently, is -Q1a-T1a in which each Q1a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and each T1a independently is H, halo, cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2—NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; or

    • R1a and R11a together with the carbon atom to which they are attached form a C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;

    • each of R1a′ and R2a′, independently, is -Q2a-T2a, in which Q2a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T2a is H, halo, cyano, or RS2a, in which RS2a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS2a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2—NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;

    • R3a is H, NRaaRba, ORaa, or RS4a, in which RS4a is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or alternatively;

    • R3a and one of R1a′, R2a′, R1a, R2a and R11a, together with the atoms to which they are attached, form a 5- or 6-membered heteroaryl that is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl; or

    • R3a is oxo and custom-character is a single bond;

    • each R4a independently is -Q3a-T3a, in which each Q3a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T3a independently is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;

    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;

    • R8a is -Q4a-T4a, in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Rda independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo; and

    • n is 1, 2, 3, or 4.





In some embodiments, the compound is not




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In some embodiments, when n is 2, X1a is CR1aR11a, X2a is N, X3a is C, R3a is NH2, and at least one R4a is OR7a, then one of (1)-(4) below applies:

    • (1) at least one of R1a and R11a is -Q1a-T1a, in which Q1a is a C1-C6 alkylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2—NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; or
    • (2) at least one of R1a and R11a is -Q1a-T1a, in which Q1a is a C2-C6 alkenylene or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is H, halo, cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2, —NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; or
    • (3) at least one of R1a and R11a is -Q1a-T1a, in which Q1a is a bond, and T1a is halo, cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2—NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; or
    • (4) R1a and R11a together with the carbon atom to which they are attached form a C7-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the C7-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, at least one of X2a and X3a is N.


In some embodiments, at least two of X1a, X2a, and X3a comprise N.


In some embodiments at least one of custom-character, custom-character and custom-character is a double bond.


In some embodiments, custom-character is a double bond.


In some embodiments, custom-character is a single bond.


In some embodiments, X2a is NR2a′ and R3a is oxo.


In some embodiments, X2a is N and X3a is C.


In some embodiments, X2a is CR2a and X3a is N.


In some embodiments, X1a is S.


In some embodiments, X1a is NR1a′.


In some embodiments, X1a is CR1aR11a.


In some embodiments, R1a and R11a together with the carbon atom to which they are attached form a 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the 4- to 7-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, n is 1 or 2.


In some embodiments, n is 2.


In some embodiments, the compound is of Formula (IIa′), (IIb′), (IIc′), (IId′), (IIe′), (IIIa′), (IIIb′), (IIIc′), (IIId′), (IIIe′), (IIIf′), (IVa′), or (IVb′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, the compound is of Formula (IIf′), (IIg′), (IIh′), (IIIi′), (IIIj′), (IIIk′), or (IIIl′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • R3a is H, NRaaRba, ORaa, or RS4a, in which RS4a is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S;
    • each of R4a and R4a′ independently is -Q3a-T3a, in which each Q3a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T3a independently is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;
    • R8a is -Q4a-T4a, in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Rda independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, the compound is not one of those described in EP 0356234; U.S. Pat. Nos. 5,106,862; 6,025,379; 9,284,272; WO2002/059088; and/or WO2015/200329.


In some embodiments, when n is 2, X1a is CR1aR11a, X2a is N, X3a is C, R3a is NH2, and at least one R4a is OR7a, then at least one of R1a and R11a is -Q1a-T1a, in which Q1a is a C1-C6 alkylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2, —NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, when n is 2, X1a is CR1aR11a, X2a is N, X3a is C, R3a is NH2, and at least one R4a is OR7a, then at least one of R1a and R11a is -Q1a-T1a, in which Q1a is a C2-C6 alkenylene or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is H, halo, cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2—NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, when n is 2, X1a is CR1aR11a, X2a is N, X3a is C, R3a is NH2, and at least one R4a is OR7a, then at least one of R1a and R11a is -Q1a-T1a, in which Q1a is a bond, and T1a is halo, cyano, NR5aR6a, C(O)NR5aR6a, —OC(O)NR5aR6a, C(O)OR5a, —OC(O)R5a, C(O)R5a, —NR5aC(O)R6a, —NR5aC(O)OR6a, OR5a, or RS1a, in which RS1a is C3-C12 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, —C(O)R6a, —SO2R5a, —SO2N(R5a)2, —NR5aC(O)R6a, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, when n is 2, X1a is CR1aR11a, X2a is N, X3a is C, R3a is NH2, and at least one R4a is OR7a, then R1a and R11a together with the carbon atom to which they are attached form a C7-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, wherein the C7-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R2a is -Q1a-T1a, in which Q1a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is H, halo, cyano, or RS1a, in which RS1a is C3-C12 cycloalkyl (e.g., C3-C8 cycloalkyl), phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R2a is C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl. In some embodiments, R2a is unsubstituted C1-C6 alkyl.


In some embodiments, Q1a is a bond or C1-C6 alkylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is H, halo, cyano, or RS1a, in which RS1a is C3-C12 cycloalkyl (e.g., C3-C8 cycloalkyl), phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, Q1a is a C2-C6 alkenylene or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T1a is H, halo, cyano, or RS1a, in which RS1a is C3-C12 cycloalkyl (e.g., C3-C8 cycloalkyl), phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R1a′ is -Q2a-T2a, in which Q2a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T2a is H, halo, cyano, or RS2a, in which RS2a is C3-C12 cycloalkyl (e.g., C3-C8 cycloalkyl), phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS2a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R2a′ is -Q2a-T2a, in which Q2a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T2a is H, halo, cyano, or RS2a, in which RS2a is C3-C12 cycloalkyl (e.g., C3-C8 cycloalkyl), phenyl, 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS2a is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, each Q2a independently is a bond or C1-C6 alkylene linker optionally substituted with one or more of halo and each T2a independently is H, halo, C3-C12 cycloalkyl (e.g., C3-C8 cycloalkyl), or a 4- to 7-membered heterocycloalkyl.


In some embodiments, each Q2a independently is C2-C6 alkenylene or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl.


In some embodiments, R2a′ is H or C1-C6 alkyl.


In some embodiments, R3a is H.


In some embodiments, R3a is NRaaRba or ORaa, wherein each of Raa and Rba independently is H or C1-C6 alkyl optionally substituted with one or more of halo, hydroxyl, CN, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R3a is NRaaRba or ORaa, wherein each of Raa and Rba independently is H or C1-C6 alkyl optionally substituted with one or more of halo, hydroxyl, amino, mono- or di-alkylamino, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S.


In some embodiments, R3a is NRaaRba.


In some embodiments, each of Raa and Rba independently is H or RS5a.


In some embodiments, one of Raa and Rba is H and the other is RS5a.


In some embodiments, Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl), which is optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl).


In some embodiments, Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl), which is optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, or C1-C6 alkoxyl.


In some embodiments, RS5a is C1-C6 alkyl, and RS5a is optionally substituted with one or more of halo, hydroxyl, CN, amino, mono- or di-alkylamino, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl).


In some embodiments, RS5a is phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl), and RS5a is optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl).


In some embodiments, the compound is of Formulae (Va′), (Vb′), (Vc′), (Vd′), (Ve′), or (Vf′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • R3a is H, NRaaRba, ORaa, or RS4a, in which RS4a is C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Ra and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S;
    • each of R4a and R4a′ independently is -Q3a-T3a, in which each Q3a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T3a independently is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; and
    • R8a is -Q4a-T4a in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Rda independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, when R3a is —NH2, then R4a is not —OCH3.


In some embodiments, when R3a is —NH2, and R4a is not —OCH3, then R4a′ is not OR8a.


In some embodiments, R3a is C1-C6 alkyl, C2-C6 alkenyl, or C2-C6 alkynyl, each of which is optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S; in which each of the C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, and 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, or C1-C6 alkoxyl.


In some embodiments, R3a is C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O, and S, wherein each of the C3-C12 cycloalkyl and 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, or C1-C6 alkoxyl.


In some embodiments, R3a is




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In some embodiments, R3a is NH2.


In some embodiments, R3a is NRaaRba, in which one of Raa and Rba is H and the other is C1-C6 alkyl optionally substituted with one or more of halo or C1-C6 alkoxyl.


In some embodiments, R3a is oxo and custom-character is a single bond.


In some embodiments, R3a is OH.


In some embodiments, R3a is C1-C6 alkoxyl.


In some embodiments, R3a and one of R1a′, R2a′, R1a, R2a and R11a, together with the atoms to which they are attached, form a 6-membered heteroaryl that is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl.


In some embodiments, R3a and one of R1a′, R2a′, R1a, R2a and R11a, together with the atoms to which they are attached, form a 5-membered heteroaryl that is optionally substituted with one or more of halo, C1-C3 alkyl, hydroxyl or C1-C3 alkoxyl.


In some embodiments, the compound is of Formulae (VIa′), (VIb′), (VIc′), (VId′), (VIe′), or (VIf′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or alternatively; and
    • each of R4a and R4a′ independently is -Q3a-T3a, in which each Q3a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T3a independently is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R8a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; and
    • R8a is -Q4a-T4a in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Rda independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, at least one of Raa and Rba is RS5a.


In some embodiments, when both of Raa and Rba are H, then R4a is not —OCH3.


In some embodiments, when both of Raa and Rba are H, and R4a is —OCH3, then R4a′ is not OR8a.


In some embodiments, each of R4a and R4a′ is independently -Q3a-T3a in which each Q3a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T3a independently is H, halo, OR7a, OR1a, NR7aR8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl.


In some embodiments, R4a is -Q3a-T3a in which Q3a is a bond or C1-C6 alkylene linker, and T3a is H, halo, OR7a, C6-C10 aryl, or 5- to 10-membered heteroaryl.


In some embodiments, R4a′ is -Q3a-T3a in which Q3a independently is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T3a independently is H, OR7a, OR8a, NR7aR8a, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl.


In some embodiments, at least one of R4a and R4a′ is C1-C6 alkyl. In some embodiments, R4a is C1-C6 alkyl.


In some embodiments, at least one of R4a and R4a′ is CH3. In some embodiments, R4a is CH3.


In some embodiments, at least one of R4a and R4a′ is halo. In some embodiments, R4a is halo.


In some embodiments, at least one of R4a and R4a′ is F or Cl. In some embodiments, R4a is F or Cl.


In some embodiments, at least one of R4a and R4a′ is C6-C10 aryl. In some embodiments, R4a is C6-C10 aryl.


In some embodiments, at least one of R4a and R4a′ is




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In some embodiments, R4a is




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In some embodiments, at least one of R4a and R4a′ is 5- to 10-membered heteroaryl. In some embodiments, R4a is 5- to 10-membered heteroaryl.


In some embodiments, at least one of R4a and R4a′ is




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In some embodiments, R4a is




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In some embodiments, at least one of R4a and R4a′ is




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wherein T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a.


In some embodiments, R4a′ is




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wherein T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a.


In some embodiments, at least one of R4a and R4a′ is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, R4a′ is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, at least one of R4a and R4a′ is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl and the other of R4a and R4a′ is halo, C1-C6 alkyl, or OR7a. In some embodiments, R7a is H or C1-C6 alkyl optionally substituted with one or more of hydroxyl, amino or mono- or di-alkylamino.


In some embodiments, at least one of R4a and R4a′ is —OCH3, —OCH2CH3, or —OCH(CH3)2.


In some embodiments, at least one of R4a and R4a′ is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl and the other of R4a and R4a′ is OCH3, —OCH2CH3, or —OCH(CH3)2.


In some embodiments, at least one of R4a and R4a′ is —OCH3.


In some embodiments at least one of R4a and R4a′ is




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In some embodiments, R4a′ is




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In some embodiments, at least one of R4a and R4a′ is OR7a. In some embodiments, R4a is OR7a. In some embodiments, R4a is OR7a


In some embodiments, at least one of R4a and R4a′ is OR8a. In some embodiments, R4a′ is OR8a.


In some embodiments, at least one of R4a and R4a′ is —CH2-T3a, wherein T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a.


In some embodiments, R4a′ is —CH2-T3a, wherein T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a.


In some embodiments, at least one of R4a and R4a′ is —CH2—OR8. In some embodiments, R4a′ is —CH2—OR8.


In some embodiments, at least one of R4a and R4a′ is —CH2—NR7R8. In some embodiments, R4a′ is —CH2—NR7R8.


In some embodiments, at least one of R4a and R4a′ is halo, C1-C6 alkyl, or OR7a. In some embodiments, R4a is halo, C1-C6 alkyl, or OR7.


In some embodiments, at least one of R4a and R4a′ is C1-C6 alkoxyl. In some embodiments, R4a is C1-C6 alkoxyl.


In some embodiments, at least one of R4a and R4a′ is —OCH3, —OCH2CH3, or —OCH(CH3)2. In some embodiments, R4a is —OCH3, —OCH2CH3, or —OCH(CH3)2.


In some embodiments, at least one of R4a and R4a′ is —OCH3. In some embodiments, R4a is —OCH3.


In some embodiments, R7a is H or C1-C6 alkyl optionally substituted with one or more of hydroxyl, amino or mono- or di-alkylamino.


In some embodiments, R8a is -Q4a-T4a in which Q4a is a C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is C3-C12 cycloalkyl, C6-C10 aryl, or 4- to 12-membered heterocycloalkyl (e.g., 4- to 7-membered heterocycloalkyl) containing 1-4 heteroatoms selected from N, O and S which is optionally substituted with one or more -Q5a-T5a.


In some embodiments, each 4- to 12-membered heterocycloalkyl described herein include, e.g., a 4 to 7-membered monocyclic heterocycloalkyl or 7 to 12-membered bicyclic heterocycloalkyl such as azetidinyl, oxetanyl, thietanyl, pyrrolidinyl, imidazolidinyl, pyrazolidinyl, oxazolidinyl, isoxazolidinyl, triazolidinyl, tetrahyrofuranyl, piperidinyl, 1,2,3,6-tetrahydropyridinyl, piperazinyl, tetrahydro-2H-pyranyl, 3,6-dihydro-2H-pyranyl, tetrahydro-2H-thiopyranyl, 1,4-diazepanyl, 1,4-oxazepanyl, 2-oxa-5-azabicyclo[2.2.1]heptanyl, 2,5-diazabicyclo[2.2.1]heptanyl, 2-oxa-6-azaspiro[3.3]heptanyl, 2,6-diazaspiro[3.3]heptanyl, morpholinyl, 3-azabicyclo[3.1.0]hexan-3-yl, 3-azabicyclo[3.1.0]hexanyl, 1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazolyl, 3,4,5,6,7,8-hexahydropyrido[4,3-d]pyrimidinyl, 4,5,6,7-tetrahydro-1H-pyrazolo[3,4-c]pyridinyl, 5,6,7,8-tetrahydropyrido[4,3-d]pyrimidinyl, 2-azaspiro[3.3]heptanyl, 2-methyl-2-azaspiro[3.3]heptanyl, 2-azaspiro[3.5]nonanyl, 2-methyl-2-azaspiro[3.5]nonanyl, 2-azaspiro[4.5]decanyl, 2-methyl-2-azaspiro[4.5]decanyl, 2-oxa-azaspiro[3.4]octanyl, 2-oxa-azaspiro[3.4]octan-6-yl, and the like.


In some embodiments, R8a is -Q4a-RS5a, in which Q4a is a bond or a C1-C6 alkylene linker (e.g., C2-C6 alkylene linker) optionally substituted with a hydroxyl and RS3a is 4- to 12-membered heterocycloalkyl (e.g., a 4 to 7-membered monocyclic heterocycloalkyl or 7 to 12-membered bicyclic heterocycloalkyl such as azetidinyl, oxetanyl, thietanyl, pyrrolidinyl, imidazolidinyl, pyrazolidinyl, oxazolidinyl, isoxazolidinyl, triazolidinyl, tetrahyrofuranyl, piperidinyl, 1,2,3,6-tetrahydropyridinyl, piperazinyl, tetrahydro-2H-pyranyl, 3,6-dihydro-2H-pyranyl, tetrahydro-2H-thiopyranyl, 1,4-diazepanyl, 1,4-oxazepanyl, 2-oxa-5-azabicyclo[2.2.1]heptanyl, 2,5-diazabicyclo[2.2.1]heptanyl, 2-oxa-6-azaspiro[3.3]heptanyl, 2,6-diazaspiro[3.3]heptanyl, morpholinyl, 3-azabicyclo[3.1.0]hexan-3-yl, 3-azabicyclo[3.1.0]hexanyl, 1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazolyl, 3,4,5,6,7,8-hexahydropyrido[4,3-d]pyrimidinyl, 4,5,6,7-tetrahydro-1H-pyrazolo[3,4-c]pyridinyl, 5,6,7,8-tetrahydropyrido[4,3-d]pyrimidinyl, 2-azaspiro[3.3]heptanyl, 2-methyl-2-azaspiro[3.3]heptanyl, 2-azaspiro[3.5]nonanyl, 2-methyl-2-azaspiro[3.5]nonanyl, 2-azaspiro[4.5]decanyl, 2-methyl-2-azaspiro[4.5]decanyl, 2-oxa-azaspiro[3.4]octanyl, 2-oxa-azaspiro[3.4]octan-6-yl, and the like), which is optionally substituted with one or more -Q5a-T5a.


In some embodiments, Q4a is C1-C6 alkylene linker optionally substituted with a hydroxyl and RS3a is C3-C6 cycloalkyl optionally substituted with one or more -Q5a-T5a.


In some embodiments, Q4a is an optionally substituted C2-C6 alkenylene or C2-C6 alkynylene linker and RS3a is 4- to 12-membered heterocycloalkyl (e.g., a 4 to 7-membered monocyclic heterocycloalkyl or 7 to 12-membered bicyclic heterocycloalkyl such as azetidinyl, oxetanyl, thietanyl, pyrrolidinyl, imidazolidinyl, pyrazolidinyl, oxazolidinyl, isoxazolidinyl, triazolidinyl, tetrahyrofuranyl, piperidinyl, 1,2,3,6-tetrahydropyridinyl, piperazinyl, tetrahydro-2H-pyranyl, 3,6-dihydro-2H-pyranyl, tetrahydro-2H-thiopyranyl, 1,4-diazepanyl, 1,4-oxazepanyl, 2-oxa-5-azabicyclo[2.2.1]heptanyl, 2,5-diazabicyclo[2.2.1]heptanyl, 2-oxa-6-azaspiro[3.3]heptanyl, 2,6-diazaspiro[3.3]heptanyl, morpholinyl, 3-azabicyclo[3.1.0]hexan-3-yl, 3-azabicyclo[3.1.0]hexanyl, 1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazolyl, 3,4,5,6,7,8-hexahydropyrido[4,3-d]pyrimidinyl, 4,5,6,7-tetrahydro-1H-pyrazolo[3,4-c]pyridinyl, 5,6,7,8-tetrahydropyrido[4,3-d]pyrimidinyl, 2-azaspiro[3.3]heptanyl, 2-methyl-2-azaspiro[3.3]heptanyl, 2-azaspiro[3.5]nonanyl, 2-methyl-2-azaspiro[3.5]nonanyl, 2-azaspiro[4.5]decanyl, 2-methyl-2-azaspiro[4.5]decanyl, 2-oxa-azaspiro[3.4]octanyl, 2-oxa-azaspiro[3.4]octan-6-yl, and the like), which is optionally substituted with one or more -Q5a-T5a.


In some embodiments, Q4 is an optionally substituted C2-C6 alkenylene or C2-C6 alkynylene linker and RS3a is C3-C6 cycloalkyl optionally substituted with one or more -Q5a-T5a.


In some embodiments, each Qa independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12cycloalkyl (e.g., C3-C8 cycloalkyl), or 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S.


In some embodiments, each Qa independently is a C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12cycloalkyl (e.g., C3-C8 cycloalkyl), or 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S.


In some embodiments, -Q5a-T5a is oxo.


In some embodiments, at least one of R4a and R4a′ is




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In some embodiments, at least one of R4a′ is




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In some embodiments, at least one of R4a and R4a′ is




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In some embodiments, R4a′ is




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In some embodiments, at least one of R4a and R4a′ is




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In some embodiments, R4a′ is




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In some embodiments, at least one of R4a and R4a′ is




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In some embodiments R4a′ is




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In some embodiments, wherein at least one of R4a and R4a′ is




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In some embodiments, R4a′ is




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In some embodiments, wherein at least one of R4a and R4a′ is




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In some embodiments, R4a′ is




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In some embodiments, one of R4a and R4a′ is halo, C1-C6 alkyl, or OR7a, and the other is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, R4a is halo, C1-C6 alkyl, or OR7a, and R4a′ is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, one of R4a and R4a′ is C1-C6 alkoxyl and the other is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, R4a is C1-C6 alkoxyl, and R4a′ is




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wherein T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, one of R4a and R4a′ is —OCH3, and the other is




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In some embodiments, R4a is —OCH3, and R4a′ is




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In some embodiments, and one of R4a and R4a′ is —OCH3, and the other is




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In some embodiments, R4a is —OCH3, and R4a′ is




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In some embodiments, the compound is of Formula (VIIa′), (VIIb′), (VIIc′), (VIId′), (VIIe′), or (VIIf′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or alternatively; and
    • R4a is halo, C1-C6 alkyl, or OR7a;
    • T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; and
    • each R8a independently is -Q4a-T4a in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Ra independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, R4a is —OCH3.


In some embodiments, T3a is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, the compound is of Formula (VIIIa′), (VIIIb′), (VIIIc′), (VIIId′), (VIIIe′), or (VIIIf′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or alternatively; and
    • R4a is -Q3a-T3a in which Q3a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; and
    • each R8a independently is -Q4a-T4a, in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Rda independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, R4a is halo, C1-C6 alkyl, or OR7a. In some embodiments, R4a is C1-C6 alkoxyl. In some embodiments, R4a is —OCH3.


In some embodiments, the compound is of Formulae (IXa′), (IXb′), (IXc′), (IXd′), (IXe′), or (IXf′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or alternatively; and
    • R4a is -Q3a-T3a in which Q3a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; and
    • each R8a independently is -Q4a-T4a in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a, wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRda, C(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Rda independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, R4a is halo, C1-C6 alkyl, or OR7a. In some embodiments, R4a is C1-C6 alkoxyl. In some embodiments, R4a is —OCH3.


In some embodiments, the compound is of Formula (Xa′), (Xb′), (Xc′), (Xd′), (Xe′), or (Xf′):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • each of Raa and Rba independently is H or RS5a, or Raa and Rba together with the nitrogen atom to which they are attached form a 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; in which RS5a is C1-C6 alkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and each of RS4a, RS5a, and the heterocycloalkyl formed by Raa and Rba is independently optionally substituted with one or more of halo, hydroxyl, oxo, CN, amino, mono- or di-alkylamino, C1-C6 alkyl, C1-C6 alkoxyl, C3-C12 cycloalkyl, phenyl, 5- or 6-membered heteroaryl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or alternatively; and
    • R4a is -Q3a-T3a in which Q3a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and T3a is H, halo, cyano, OR7a, OR8a, C(O)R8a, NR7aR8a, C(O)NR7aR8a, NR7aC(O)R8a, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2R5a, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NR5aR6a;
    • each of R5a, R6a, and R7a, independently, is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl; and
    • each R8a independently is -Q4a-T4a, in which Q4a is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4a is H, halo, or RS3a, in which RS3a is C3-C12 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O and S, or a 5- to 10-membered heteroaryl, and RS3a is optionally substituted with one or more -Q5a-T5a, wherein each Q5a independently is a bond or C1-C3 alkylene, C2-C3 alkenylene, or C2-C3 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5a independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C3-C12 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORca, C(O)Rca, NRcaRdaC(O)NRcaRda, S(O)2Rca, and NRcaC(O)Rda, each of Rca and Ra independently being H or C1-C6 alkyl optionally substituted with one or more halo; or -Q5a-T5a is oxo.


In some embodiments, R4a is halo, C1-C6 alkyl, or OR7a. In some embodiments, R4a is C1-C6 alkoxyl. In some embodiments, R4a is —OCH3.


In certain embodiments, for the methods disclosed herein, the EHMT2 inhibitor is a compound of Formula (I′), (II″), or (III″):




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or a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • X1b is N or CR2b;
    • X2b is N or CR3b;
    • X3b is N or CR4b;
    • X4b is N or CR5b;
    • each of X5b, X6b and X7b is independently N or CH;
    • B is C6-C10 aryl or 5- to 10-membered heteroaryl;
    • R1b is H or C1-C4 alkyl;
    • each of R2b, R3b, R4b, and R5b, independently is selected from the group consisting of H, halo, cyano, C1-C6 alkoxyl, C6-C10 aryl, OH, NRabRbb, C(O)NRabRbb, NRabC(O)Rbb, C(O)ORab, OC(O)Rab, OC(O)NRabRb, NRabC(O)ORbb, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, wherein the C6-C10 aryl, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkoxyl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, are each optionally substituted with one or more of halo, ORab, or NRabRb in which each of Rab and Rbb independently is H or C1-C6 alkyl;
    • R6b is -Q1b-T1b, in which Q1b is a bond, or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T1b is H, halo, cyano, or RS1b, in which RS1b is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1b is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, —C(O)Rcb, —C(O)ORcb, —SO2Rcb, —SO2N(Rb)2—NRcbC(O)Rdb, —C(O)NRcbRdb, —NRcbC(O)ORdb, —OC(O)NRcbRdb, NRcbRdb, or C1-C6 alkoxyl, in which each of Rcb and Rdb independently is H or C1-C6 alkyl;
    • R7b is -Q2b-T2b, in which Q2b is a bond, C(O)NRcb, or NRcbC(O), Rcb being H or C1-C6 alkyl and T2b is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl, and wherein the 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more -Q3b-T3b, wherein each Q3b independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T3b independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORfb, C(O)Rfb, C(O)ORfb, OC(O)Rfb, S(O)2Rfb, NRfbRgb, OC(O)NRfbRgb, NRfbC(O)ORgb, C(O)NRfbRgb, and NRfbC(O)Rgb, each of Rfb and Rgb independently being H or C1-C6 alkyl, in which the C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl or 5- to 6-membered heteroaryl is optionally substituted with one or more halo, cyano, hydroxyl, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, or C1-C6 alkoxy; or -Q3b-T3b is oxo;
    • R8b is H or C1-C6 alkyl;
    • R9b is -Q4b-T4b, in which Q4b is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4b is H, halo, ORhb, NRhbRib, NRhbC(O)Rib, C(O)NRhbRib, C(O)Rb, C(O)ORhb, NRhbC(O)ORib, OC(O)NRhbRib, S(O)2Rhb, S(O)2NRhbRib, or RS2b, in which each of Rhb and Rib independently is H or C1-C6 alkyl, and RS2b is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS2b is optionally substituted with one or more -Q5b-T5b, wherein each Q5b independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5b independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORjb, C(O)Rjb, C(O)ORjb, OC(O)Rjb, S(O)2Rb, NRjbRkb, OC(O)NRjbRkb, NRjbC(O)ORkb, C(O)NRjbRkb, and NRjbC(O)Rkb, each of Rjb and Rkb independently being H or C1-C6 alkyl; or -Q5b-T5b is oxo;
    • R10b is 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, which is optionally substituted with one or more halo, cyano, hydroxyl, oxo, amino, mono- or di-alkylamino, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, or C1-C6 alkoxy; and
    • R11b and R12b together with the carbon atom to which they are attached form a C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


The compounds of Formulae (I′)-(III″) may have one or more of the following features when applicable.


In some embodiments, the EHMT2 inhibitor is a compound is of Formula (I′).


In some embodiments, at least one of X1b, X2b, X3b and X4b is N.


In some embodiments, X1b and X3b are N.


In some embodiments, X1b and X3b are N, X2b is CR3b and X4b is CR5b.


In some embodiments,




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is




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In some embodiments,




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is




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In some embodiments, ring B is phenyl or 6-membered heteroaryl.


In some embodiments,




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is




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In some embodiments, ring B is phenyl or pyridyl.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (Ia″), (Ib″), (Ic″), or (Id″):




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In some embodiments, at most one of R3b and R5b is not H.


In some embodiments, at least one of R3b and R5b is not H.


In some embodiments, R3b is H or halo.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (Ie″), (If″), (Ig″), or (Ih″):




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In some embodiments, at most one of R4b and R5b is not H.


In some embodiments, at least one of R4b and R5b is not H.


In some embodiments, R4b is H, C1-C6 alkyl, or halo.


In some embodiments, the EHMT2 inhibitor is a compound of Formula (Ii″), (Ij″), (Ik″), or (Il″).




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In some embodiments, at most one of R2b and R5b is not H.


In some embodiments, at least one of R2b and R5b is not H.


In some embodiments, R2b is H, C1-C6 alkyl, or halo.


In some embodiments, R5b is C1-C6 alkyl.


In some embodiments, the EHMT2 inhibitor is a compound is of Formula (II″).


In some embodiments, each of X5b, X6b and X7b is CH.


In some embodiments, at least one of X5b, X6b and X7b is N.


In some embodiments, at most one of X5b, X6b and X7b is N.


In some embodiments, R10b is optionally substituted 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S.


In some embodiments, R10b is connected to the bicyclic group of Formula (II″) via a carbon-carbon bond.


In some embodiments, R10b is connected to the bicyclic group of Formula (II″) via a carbon-nitrogen bond.


In some embodiments, the compound is of Formula (III″).


In some embodiments, R11b and R12b together with the carbon atom to which they are attached form a 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the 4- to 7-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R11b and R12b together with the carbon atom to which they are attached form a C4-C8 cycloalkyl which is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, each of X5b and X6b is CH.


In some embodiments, each of X5b and X6b is N.


In some embodiments, one of X5b and X6b is CH and the other is CH.


In some embodiments, R6b is -Q1b-T1b, in which Q1b is a bond or C1-C6 alkylene linker optionally substituted with one or more of halo, and T1b is H, halo, cyano, or RS1b, in which RS1b is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1b is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, NRcbRdb, or C1-C6 alkoxyl.


In some embodiments, R6b is C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl.


In some embodiments, R6b is unsubstituted C1-C6 alkyl.


In some embodiments, R7b is -Q2b-T2b, in which Q2b is a bond or C(O)NRcb, and T2b is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl, wherein the 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more -Q3b-T3b.


In some embodiments, Q2b is a bond.


In some embodiments, T2b is 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, which is optionally substituted with one or more -Q3b-T3b.


In some embodiments, T2b is 8- to 12-membered bicyclic heterocycloalkyl that comprises a 5- or 6-membered aryl or heteroaryl ring fused with a non-aromatic ring.


In some embodiments, T2b is 8- to 12-membered bicyclic heterocycloalkyl that comprises a 5- or 6-membered aryl or heteroaryl ring fused with a non-aromatic ring, in which the 5- or 6-membered aryl or heteroaryl ring is connected to Q2b.


In some embodiments, T2b is 5- to 10-membered heteroaryl.


In some embodiments, T2b is selected from




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and tautomers thereof, each of which is optionally substituted with one or more -Q3b-T3b, wherein X8b is NH, O, or S, each of X9b, X10b, X11b, and X12b is independently CH or N, and at least one of X9b, X10b, X11b, and X12b is N, and ring A is a C5-C8 cycloalkyl, phenyl, 6-membered heteroaryl, or 4- to 8-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S.


In some embodiments, T2b is selected from




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and tautomers thereof, each of which is optionally substituted with one or more -Q3b-T3b.


In some embodiments, each Q3b independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T3b independently is selected from the group consisting of H, C1-C6 alkyl, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, ORfb, C(O)Rfb, C(O)ORfb, NRfbRgb, C(O)NRfbRgb, and NRfbC(O)Rgb, in which the C3-C8 cycloalkyl or 4- to 7-membered heterocycloalkyl is optionally substituted with one or more halo, cyano, hydroxyl, C1-C6 alkyl or C1-C6 alkoxy.


In some embodiments, at least one of R8b and R9b is H.


In some embodiments, each of R8b and R9b is H.


In some embodiments, R8b is H.


In some embodiments, R9b is -Q4b-T4b, in which Q4b is a bond or C1-C6 alkylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4b is H, halo, ORhb, NRhbRib, NRhbC(O)Rib, C(O)NRhbRib, C(O)Rb, C(O)ORhb, or RS2b, in which RS2b is C3-C8 cycloalkyl or 4- to 7-membered heterocycloalkyl, and RS2b is optionally substituted with one or more -Q5b-T5b.


In some embodiments, each Q5b independently is a bond or C1-C3 alkylene linker.


In some embodiments, each T5b independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, ORjb, C(O)Rjb, C(O)ORjb, NRjbRkb, C(O)NRjbRkb, and NRjbC(O)Rkb.


In some embodiments, R9b is C1-C3 alkyl.


In some embodiments, for the methods disclosed herein, the EHMT2 inhibitor is of Formula (I′″), (II′″), or (III′″).




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tautomers thereof, and pharmaceutically acceptable salts of the compounds and the tautomers, wherein

    • X1c is N or CR2c;
    • X2c is N or CR3c;
    • X3c is N or CR4c;
    • X4c is N or CR5c;
    • each of X5c, X6c and X7c is independently N or CH;
    • X8c is NR13c or CR11cR12c;
    • R1c is H or C1-C4 alkyl;
    • each of R2c, R3c, R4c, and R5c, independently is selected from the group consisting of H, halo, cyano, C1-C6 alkoxyl, C6-C10 aryl, OH, NRacRbc, C(O)NRacRbc, NRacC(O)Rbc, C(O)ORac, OC(O)Rae, OC(O)NRacRbc, NRacC(O)ORbc, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, wherein the C6-C10 aryl, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkoxyl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, are each optionally substituted with one or more of halo, ORac, or NRacRbc, in which each of Rac and Rbc independently is H or C1-C6 alkyl;
    • R6c is -Q1c-T1c in which Q1c is a bond, or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T1c is H, halo, cyano, or RS1c, in which RS1c is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1c is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, —C(O)Rcc, —C(O)ORcc, —SO2Rcc, —SO2N(Rcc)2, —NRccC(O)Rdc, —C(O)NRccRdc, —NRccC(O)ORdc, —OC(O)NRccRdc, NRccRdc, or C1-C6 alkoxyl, in which each of Rcc and Rdc independently is H or C1-C6 alkyl;
    • R7c is -Q2c-T2c, in which Q2c is a bond, C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, and T2c is H, halo, cyano, ORec, ORfc, C(O)Rfc, NRecRfc, C(O)NRecRfc, NRecC(O)Rfc, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more -Q3c-T3, wherein each Q3c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T3c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORec, ORfc, C(O)Rfc, C(O)ORfc, OC(O)Rfc, S(O)2Rfc, NRfcRgc, OC(O)NRfcRgc, NRfcC(O)ORgc, C(O)NRfcRgc, and NRfcC(O)Rgc; or -Q3c-T3c is oxo;
    • each Rec independently is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;
    • each of Rfc and Rgc, independently, is -Q6c-T6, in which Q6c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T6 is H, halo, ORm1c, NRm1cRm2c, NRm1cC(O)Rm2c, C(O)NRm1cRm2c, C(O)Rm1c, C(O)ORm1c, NRm1cC(O)ORm2c, OC(O)NRm1cRm2c, S(O)2Rm1c, S(O)2NRm1cRm2c, or RS3c, in which each of Rm1c and Rm2c independently is H, C1-C6 alkyl, or (C1-C6 alkyl)-RS3c, and RS3c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS3c is optionally substituted with one or more -Q7c-T7c, wherein each Q7c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T7c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORn1c, C(O)Rn1c, C(O)ORn1c, OC(O)Rn1c, S(O)2Rn1c, NRn1cRn2c, OC(O)NRn1cRn2c, NRn1cC(O)ORn2c, C(O)NRn1cRn2c, and NRn1cC(O)Rn2c, each of Rn1c and Rn2c independently being H or C1-C6 alkyl; or -Q7c-T7c is oxo;
    • R8c is H or C1-C6 alkyl;
    • R9c is -Q4c-T4c, in which Q4c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4c is H, halo, ORhc, NRhcRic, NRhcC(O)Ric, C(O)NRhcRic, C(O)Rhc, C(O)ORhc, NRhcC(O)ORic, OC(O)NRhcRic, S(O)2Rhc, S(O)2NRhcRic, or RS2c, in which each of Rhc and Ric independently is H or C1-C6 alkyl, and RS2c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS2c is optionally substituted with one or more -Q5c-T50 wherein each Q5c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORjc, C(O)Rjc, C(O)ORjc, OC(O)Rjc, S(O)2Rjc, NRjcRkc, OC(O)NRjcRkc, NRjcC(O)ORkc, C(O)NRjcRkc, and NRjcC(O)Rkc, each of Rjc and Rkc independently being H or C1-C6 alkyl; or -Q5c-T5c is oxo;
    • R10c is halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein each of the C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, and 4- to 12-membered heterocycloalkyl is optionally substituted with one or more halo, cyano, hydroxyl, oxo, amino, mono- or di-alkylamino, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1-C6 alkoxy, C(O)NRjcRkc, or NRjcC(O)Rkc;
    • R11c and R12c together with the carbon atom to which they are attached form a C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;
    • R13c is H, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; and
    • each of R14c and R15c, independently, is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, for the methods disclosed herein, the EHMT2 inhibitor is of Formula (I′″), (II′″), or (III′″), a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • X1c is N or CR2c;
    • X2c is N or CR3c;
    • X3c is N or CR4c;
    • X4c is N or CR5c;
    • each of X5c, X6c and X7c is independently N or CH;
    • X8c is NR13c or CR11cR12c;
    • R1c is H or C1-C4 alkyl;
    • each of R2c, R3c, R4c, and R5c, independently is selected from the group consisting of H, halo, cyano, C1-C6 alkoxyl, C6-C10 aryl, OH, NRacRbc, C(O)NRacRbc, NRacC(O)Rbc, C(O)ORac, OC(O)Rac, OC(O)NRacRbc, NRacC(O)ORbc, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, wherein the C6-C10 aryl, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkoxyl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, are each optionally substituted with one or more of halo, ORac, or NRacRbc, in which each of Rac and Rbc independently is H or C1-C6 alkyl;
    • R6c is -Q1c-T1c, in which Q1c is a bond, or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T1c is H, halo, cyano, or RS1c, in which RS1c is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1c is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, —C(O)Rcc, —C(O)ORcc, —SO2Rcc, —SO2N(Rcc)2, —NRccC(O)Rdc, —C(O)NRccRdc, —NRccC(O)ORdc, —OC(O)NRccRdc, NRccRdc, or C1-C6 alkoxyl, in which each of Rcc and Rdc independently is H or C1-C6 alkyl;
    • R7c is -Q2c-T2c, in which Q2c is a bond, C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, and T2c is H, halo, cyano, ORec, ORfc, C(O)Rfc, NRecRfc, C(O)NRecRfc, NRecC(O)Rfc, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more -Q3c-T3c, wherein each Q3c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T3c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORec, ORfc, C(O)Rfc, C(O)ORfc, OC(O)Rfc, S(O)2Rfc, NRfcRgc, OC(O)NRfcRgc, NRfcC(O)ORgc, C(O)NRfcRgc, and NRfcC(O)Rgc; or -Q3c-T3c is oxo;
    • each Rec independently is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;
    • each of Rfc and Rgc, independently, is -Q6c-T6c in which Q6c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T6c is H, halo, ORm1c, NRm1cRm2c, NRm1cC(O)Rm2c, C(O)NRm1cRm2c, C(O)Rm1c, C(O)ORm1c, NRm1cC(O)ORm2c, OC(O)NRm1cRm2c, S(O)2Rm1c, S(O)2NRm1cRm2c, or RS3c, in which each of Rm1c and Rm2c independently is H or C1-C6 alkyl, and RS3c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS3c is optionally substituted with one or more -Q7c-T7c, wherein each Q7c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T7c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORn1c, C(O)Rn1c, C(O)ORn1c, OC(O)Rn1c, S(O)2Rn1c, NRn1cR2c, OC(O)NRn1cRn2c, NRn1cC(O)ORn2c, C(O)NRn1cRn2c, and NRn1cC(O)Rn2c, each of Rn1c and Rn2c independently being H or C1-C6 alkyl; or -Q7c-T7c is oxo;
    • R8c is H or C1-C6 alkyl;
    • R9c is -Q4c-T4c in which Q4c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4c is H, halo, ORhc, NRhcRic, NRhcC(O)Ric, C(O)NRhcRic, C(O)Rhc, C(O)ORhc, NRhcC(O)ORic, OC(O)NRhcRic, S(O)2Rhc, S(O)2NRhcRic, or RS2c, in which each of Rhc and Ric independently is H or C1-C6 alkyl, and RS2c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS2c is optionally substituted with one or more -Q5c-T5c wherein each Q5c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5 independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORjc, C(O)Rjc, C(O)ORjc, OC(O)Rjc, S(O)2Rjc, NRjcRkc, OC(O)NRjcRkc, NRjcC(O)ORkc, C(O)NRjcRkc, and NRjcC(O)Rkc, each of Rjc and Rkc independently being H or C1-C6 alkyl; or -Q5c-T5c is oxo;
    • R10c is halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein each of the C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, and 4- to 12-membered heterocycloalkyl is optionally substituted with one or more halo, cyano, hydroxyl, oxo, amino, mono- or di-alkylamino, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1-C6 alkoxy, C(O)NRjcRkc, or NRjcC(O)Rkc;


R11c and R12c together with the carbon atom to which they are attached form a C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;

    • R13c is H, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S; and
    • each of R14c and R15c, independently, is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, the compound is of Formula (I′″), a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, when X1c is N, X2c is CH, X3c is N, X4c is CCH3, X5c is CH, X6c is CH, R1c is H, R7c is




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one of R8c and R9c is H and the other one is CH3, and R14c is OCH3, then

    • R15c is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, when X1c is N, X2c is CH, X3c is N, X4c is CCH3, X5c is CH, X6c is CH, R1c is H, R7c is




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one of R8c and R9c is H and the other one is CH3, and R14c is OCH3, then

    • R15c is H, Cl, Br, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, wherein when X1c is N, X2c is CH, X3c is N, X4c is CCH3, X5c is CH, X6c is CH, R1c is H, R7c is selected from the group consisting of




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one of R8c and R9c is H and the other one is CH3, and R14c is Cl, then


R15c is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, wherein when X1c is N, X2c is CH, X3c is N, X4c is CCH3, X5c is CH, X6c is CH, R1c is H, R7c is selected from the group consisting of




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one of R8c and R9c is H and the other one is CH3, and R14c is Cl, then

    • R15c is halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, the compound is not one of the following compounds:




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In some embodiments, the compound is of Formula (II′″) or a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, when X5c is CH, X7c is CH, R7c is




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one of R8c and R9c is H and the other one is CH3, R10c is




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and R14c is OCH3, then

    • R15c is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, when X5c is CH, X7c is CH, R7c is




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one of R8c and R9c is H and the other one is CH3, R10c is




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and R14c is OCH3, then

    • R15c is H, Cl, Br, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, the compound is not




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In some embodiments, the compound is of Formula (III′″) or a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, when X5c is CH, X8c is CR11cR12c, in which R11c and R12c together with the carbon atom to which they are attached form a cyclobutyl, R7c is




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one of R8c and R9c is H and the other one is CH3, and R14c is OCH3, then

    • R15c is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, when X5c is CH, X8c is CR11cR12c, in which R11c and R12c to ether with the carbon atom to which they are attached form a cyclobutyl, R7c is




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one of R8c and R9c is H and the other one is CH3, and R14c is OCH3, then

    • R15c is H, Cl, Br, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, the compound is not




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In some embodiments, at least one of R14c and R15c is halo. In some embodiments, at least one of R14c and R15c is F. In some embodiments, at least one of R14c and R15c is Cl. In some embodiments, at least one of R14c and R15c is Br. In some embodiments, one of R14c and R15c is halo. In some embodiments, one of R14c and R15c is F. In some embodiments, one of R14c and R15c is Cl. In some embodiments, one of R14c and R15c is Br. In some embodiments, R14c is halo. In some embodiments, R14c is F. In some embodiments, R14c is Cl. In some embodiments, R14c is Br. In some embodiments, R15c is halo. In some embodiments, R15c is F. In some embodiments, R15, is Cl. In some embodiments, R15c is Br. In some embodiments, both of R14c and R15c are halo.


In some embodiments, one of R14c and R15c is halo, and the other one is H, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c.


In some embodiments, one of R14c and R15c is halo, and the other one is H, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano, or —OR6c, in which R6, is C1-C6 alkyl optionally substituted with one or more of halo or cyano.


In some embodiments, one of R14c and R15c is halo, and the other one is H, C1-C6 alkyl, C3-C8 cycloalkyl, or —OR6c, in which R6c is C1-C6 alkyl. In some embodiments, R14c is halo, and R15c is H, C1-C6 alkyl, C3-C8 cycloalkyl, or —OR6c, in which R6c is C1-C6 alkyl. In some embodiments, R14c is halo, and R15c is H. In some embodiments, R14c is halo, and R15c is C1-C6 alkyl. In some embodiments, R14c is halo, and R15c is C3-C8 cycloalkyl. In some embodiments, R14c is halo, and R15c is —OR6c, in which R6c is C1-C6 alkyl. In some embodiments, R15c is halo, and R14c is H, C1-C6 alkyl, C3-C8 cycloalkyl, or —OR6c, in which R6c is C1-C6 alkyl. In some embodiments, R15c is halo, and R14c is H. In some embodiments, R15c is halo, and R14c is C1-C6 alkyl. In some embodiments, R15c is halo, and R14c is C3-C8 cycloalkyl. In some embodiments, R15c is halo, and R14c is —OR6c, in which R6c is C1-C6 alkyl. In some embodiments, one of R14c and R15c is halo, and the other one is H, —CH3, cyclopropyl, or —OCH3.


In some embodiments, the compound is of any of Formula (I′″-1), (I′″-2), (II′″-1), (II′″-2), (III′″-1), or (III′″-2).




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer, wherein

    • X1c is N or CR2c;
    • X2c is N or CR3c;
    • X3c is N or CR4c;
    • X4c is N or CR5c;
    • each of X5c, X6c and X7c is independently N or CH;
    • R1c is H or C1-C4 alkyl;
    • each of R2c, R3c, R4c, and R5c, independently is selected from the group consisting of H, halo, cyano, C1-C6 alkoxyl, C6-C10 aryl, OH, NRacRbc, C(O)NRacRbc, NRacC(O)Rbc, C(O)ORac, OC(O)Rac, OC(O)NRacRbc, NRacC(O)ORbc, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, wherein the C6-C10 aryl, C3-C8 cycloalkyl, 4- to 7-membered heterocycloalkyl, 5- to 6-membered heteroaryl, C1-C6 alkoxyl, C1-C6 alkyl, C2-C6 alkenyl, and C2-C6 alkynyl, are each optionally substituted with one or more of halo, ORac, or NRacCRbc, in which each of Rac and Rbc independently is H or C1-C6 alkyl;
    • R6c is -Q1c-T1c, in which Q1c is a bond, or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, oxo, or C1-C6 alkoxyl, and T1c is H, halo, cyano, or RS1c, in which RS1c is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1c is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, —C(O)Rcc, —C(O)ORcc, —SO2Rcc, —SO2N(Rcc)2, —NRccC(O)Rdc, —C(O)NRccRdc, —NRccC(O)ORdc, —OC(O)NRccRdc, NRccRdc, or C1-C6 alkoxyl, in which each of Rcc and Rdc independently is H or C1-C6 alkyl;
    • R7c is -Q2c-T2c, in which Q2c is a bond, a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, and T2c is H, halo, cyano, ORec, ORfc, C(O)Rfc, NRecRfc, C(O)NRecRfc, NRecC(O)Rfc, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more -Q3c-T3c, wherein each Q3c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T3c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORec, ORfc, C(O)Rfc, C(O)ORfc, OC(O)Rfc, S(O)2Rfc, NRfcRgc, OC(O)NRfcRgc, NRfcC(O)ORgc, C(O)NRfcRgc, and NRfcC(O)Rgc; or -Q3c-T3c is oxo;
    • each Rec independently is H or C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl;
    • each of Rfc and Rgc, independently, is -Q6c-T6c in which Q6c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T6c is H, halo, ORm1c, NRm1cRm2c, NRm1cC(O)Rm2c, C(O)NRm1cRm2c, C(O)Rm1c, C(O)ORm1c, NRm1cC(O)ORm2c, OC(O)NRm1cRm2c, S(O)2Rm1c, S(O)2NRm1cRm2c, or RS3c, in which each of Rm1c and Rm2c independently is H or C1-C6 alkyl, and RS3c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS3c is optionally substituted with one or more -Q7c-T7c, wherein each Q7c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T7c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORn1c, C(O)Rn1c, C(O)ORn1c, OC(O)Rn1c, S(O)2Rn1c, NRn1cR2c, OC(O)NRn1cRn2c, NRn1cC(O)ORn2c, C(O)NRn1cRn2c, and NRn1cC(O)Rn2c, each of Rn1c and Rn2c independently being H or C1-C6 alkyl; or -Q7C-T7c is oxo; R8c is H or C1-C6 alkyl;
    • R9c is -Q4c-T4c in which Q4c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4C is H, halo, ORhc NRhcRic, NRhcC(O)Ric, C(O)NRhcRic, C(O)Rhc, C(O)ORhc, NRhcC(O)ORic, OC(O)NRhcRic, S(O)2Rhc, S(O)2NRhcRic, or RS2c, in which each of Rhc and Ric independently is H or C1-C6 alkyl, and RS2c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS2c is optionally substituted with one or more -Q5c-T5c wherein each Q5c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T5c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORjc, C(O)Rjc, C(O)ORjc, OC(O)Rjc, S(O)2Rjc, NRjcRkc, OC(O)NRjcRkc, NRjcC(O)ORkc, C(O)NRjcRkc, and NRjcC(O)Rkc, each of Rjc and Rkc independently being H or C1-C6 alkyl; or -Q5c-T5c is oxo;
    • R10 is halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein each of the C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, and 4- to 12-membered heterocycloalkyl is optionally substituted with one or more halo, cyano, hydroxyl, oxo, amino, mono- or di-alkylamino, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C1-C6 alkoxy, C(O)NRjcRkc, or NRjcC(O)Rkc; and
    • R11c and R12c together with the carbon atom to which they are attached form a C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl
    • each of R14c and R15c, independently, is H, halo, cyano, C1-C6 alkyl optionally substituted with one or more of halo or cyano, C2-C6 alkenyl optionally substituted with one or more of halo or cyano, C2-C6 alkynyl optionally substituted with one or more of halo or cyano, or C3-C8 cycloalkyl optionally substituted with one or more of halo or cyano.


In some embodiments, the compound is of Formula (I′″-1) or (I′″-2), a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, at least one of X1c, X2c, X3c and X4c is N. In some embodiments, X1c and X3c are N. In some embodiments, X1c and X3c are N, X2c is CR3c and X4c is CR5c.


In some embodiments,




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is




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In some embodiments,




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is




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In some embodiments, the compound is of Formula (I′″-1a), (I′″-2a), (I′″-1b), (I′″-2b), (I′″-1c), or (I′″-2c):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, at most one of R3c and R5c is not H. In some embodiments, at least one of R3c and R5c is not H. In some embodiments, R3c is H or halo.


In some embodiments, the compound is of Formula (I′″-1d), (I′″-2d), (I′″-1e), (I′″-2e), (I′″-1f), or (I′″-2f):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, at most one of R4c and R5c is not H. In some embodiments, at least one of R4c and R5c is not H. In some embodiments, R4c is H, C1-C6 alkyl, or halo.


In some embodiments, the compound of Formula (I′″-1g), (I′″-2g), (I′″-1h), (I′″-2h), (I′″-1i), or (I′″-2i):




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a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, at most one of R2c and R5c is not H. In some embodiments, at least one of R2c and R5c is not H. In some embodiments, R2c is H, C1-C6 alkyl, or halo. In some embodiments, R5c is C1-C6 alkyl.


In some embodiments, the compound is of Formula (II′″-1) of (II′″-2), a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, each of X5c, X6c and X7c is CH. In some embodiments, at least one of X5c, X6c and X7c is N. In some embodiments, at most one of X5c, X6c and X7c is N.


In some embodiments, R10 is optionally substituted 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S. In some embodiments, R1c is connected to the bicyclic group of Formula (II′″-1) or (II′″-2) via a carbon-carbon bond. In some embodiments, R10 is connected to the bicyclic group of Formula (II′″-1) or (II′″-2) via a carbon-nitrogen bond.


In some embodiments, the compound is of Formula (III′″-1) or (III′″-2), a tautomer thereof, or a pharmaceutically acceptable salt of the compound or the tautomer.


In some embodiments, R11c and R12c together with the carbon atom to which they are attached form a 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the 4- to 7-membered heterocycloalkyl is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, R11c and R12c together with the carbon atom to which they are attached form a C4-C8 cycloalkyl which is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, amino, mono- or di-alkylamino, or C1-C6 alkoxyl.


In some embodiments, each of X5c and X6c is CH. In some embodiments, each of X5c and X6c is N. In some embodiments, one of X5c and X6c is CH and the other is CH.


In some embodiments, R6c is -Q1c-T1c, in which Q1c is a bond or C1-C6 alkylene linker optionally substituted with one or more of halo, and T1c is H, halo, cyano, or RS1c, in which RS1c is C3-C8 cycloalkyl, phenyl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- or 6-membered heteroaryl and RS1c is optionally substituted with one or more of halo, C1-C6 alkyl, hydroxyl, oxo, NRccRdc, or C1-C6 alkoxyl.


In some embodiments, wherein R6c is C1-C6 alkyl optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl. In some embodiments, R6c is C1-C6 alkyl. In some embodiments, R6c is —CH3.


In some embodiments, R7c is -Q2c-T2c, in which Q2c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, and T2c is C(O)NRecRfc.


In some embodiments, Q2c is a bond. In some embodiments, Rec is H.


In some embodiments, Rfc is -Q6c-T6c in which Q6c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T6c is H, NRm1cRm2c or RS3c, in which each of Rm1c and Rm2c independently is H, C1-C6 alkyl, or —(C1-C6 alkyl)-RS3c, and RS3c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS3c is optionally substituted with one or more -Q7c-T7c.


In some embodiments, Rfc is -Q6c-T6c in which Q6c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T6c is H, NRm1cRm2c or RS3c, in which each of Rm1c and Rm2c independently is H or C1-C6 alkyl, and RS3c is C3-C8 cycloalkyl, C6-C10 aryl, 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, or a 5- to 10-membered heteroaryl, and RS3c is optionally substituted with one or more -Q7C-T7c.


In some embodiments, T6c is 8- to 12-membered bicyclic heterocycloalkyl that comprises a 5- or 6-membered aryl or heteroaryl ring fused with a non-aromatic ring. In some embodiments, T6c is 8- to 12-membered bicyclic heterocycloalkyl that comprises a 5- or 6-membered aryl or heteroaryl ring fused with a non-aromatic ring, in which the 5- or 6-membered aryl or heteroaryl ring is connected to Q2c. In some embodiments, T6c is 5- to 10-membered heteroaryl.




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and tautomers thereof, each of which is optionally substituted with one or more -Q7c-T7c, wherein X8c is NH, O, or S, each of X9c, X10, X11c, and X12c is independently CH or N, and at least one of X9c, X10, X11c, and X12c is N, and ring A is a C5-C8 cycloalkyl, phenyl, 6-membered heteroaryl, or 4- to 8-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S.


In some embodiments T6c is selected from




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and tautomers thereof, each of which is optionally substituted with one or more -Q7c-T7c.


In some embodiments, each Q7c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T7, independently is selected the group consisting of H, halo, cyano, C1-C6 alkyl, C2-C6 alkenyl, C2-C6 alkynyl, C3-C8 cycloalkyl, C6-C10 aryl, 4- to 7-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, 5- to 6-membered heteroaryl, ORn1c, C(O)Rn1c, C(O)ORn1c, OC(O)Rn1c, S(O)2Rn1c, NRn1cRn2c, OC(O)NRn1cRn2c, NRn1cC(O)ORn2c, C(O)NRn1cRn2c, and NRn1cC(O)Rn2c, each of Rn1c and Rn2c independently being H or C1-C6 alkyl; or -Q7c-T7c is oxo.


In some embodiments, each Q7c independently is a bond or C1-C3 alkylene linker each optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxy, and each T7c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, and NRn1cRn2c, each of Rn1c and Rn2c independently being H or C1-C6 alkyl.




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In some embodiments, R7c is -Q2c-T2c, in which Q2c is a bond or C1-C6 alkylene, C2-C6 alkenylene, or C2-C6 alkynylene linker optionally substituted with one or more of halo, cyano, hydroxyl, amino, mono- or di-alkylamino, or C1-C6 alkoxyl, and each T2c independently is H, ORec, ORfc, NRecRfc, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl.


In some embodiments, R7c is




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wherein T2c is H, halo, cyano, ORec, ORfc, C(O)Rfc, NRecRfc, C(O)NRecRfc, NRecC(O)Rfc, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2Rcc, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NRccRdc.


In some embodiments, R7c is




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wherein T2c is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl optionally substituted with one or more of halo, hydroxyl, C1-C6 alkoxyl or C1-C6 alkyl.


In some embodiments, R7c is




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In some embodiments, R7c is ORec.


In some embodiments, R7c is ORfc.


In some embodiments, R7c is O-Q6e-NRm1cRm2c. In some embodiments, R7c is O-Q6c-NH—(C1-C6 alkyl)-RS3c.


In some embodiments, R7c is —CH2-T2c, wherein T2c is H, halo, cyano, ORec, ORfc, C(O)Rfc, NR7cRfc, C(O)NRecRfc, NRecC(O)Rfc, C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl, or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, and wherein the C6-C10 aryl, 5- to 10-membered heteroaryl, C3-C12 cycloalkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of halo, hydroxyl, cyano, C1-C6 haloalkyl, —SO2Rcc, C1-C6 alkoxyl or C1-C6 alkyl optionally substituted with one or more of NRccRdc.


In some embodiments, R7c is —CH2—OR8.


In some embodiments, R7c is —CH2—NR7R8.




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In some embodiments, R7c is




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In some embodiments, R7 is




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In some embodiments, R7c is




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In some embodiments, R7c is




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In some embodiments, R7c is




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In some embodiments, R7c is




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In some embodiments, at least one of R8c and R9c is H. In some embodiments, each of R8c and R9c is H. In some embodiments, R8c is H.


In some embodiments, R9c is -Q4c-T4c in which Q4c is a bond or C1-C6 alkylene linker optionally substituted with one or more of halo, cyano, hydroxyl, or C1-C6 alkoxyl, and T4c is H, halo, ORhc, NRhcRic, NRhcC(O)Ric, C(O)NRhcRic, C(O)Rhc, C(O)ORhc, or RS2c, in which RS2c is C3-C8 cycloalkyl or 4- to 7-membered heterocycloalkyl, and RS2c is optionally substituted with one or more -Q5c-T5c.


In some embodiments, each Q5c independently is a bond or C1-C3 alkylene linker.


In some embodiments, each T5c independently is selected from the group consisting of H, halo, cyano, C1-C6 alkyl, ORjc, C(O)Rjc, C(O)ORjc, NRjcRkc, C(O)NRjcRkc, and NRjcC(O)Rkc.


In some embodiments, R9c is C1-C3 alkyl.


In some embodiments, R14c is H, halo, or C1-C6 alkyl.


In some aspects, the present disclosure provides a compound of Formula (IA′″) or (IIA′″):




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a tautomer thereof, a pharmaceutically acceptable salt thereof, or a pharmaceutically acceptable salt of the tautomer, wherein:

    • R8c is C1-C6 alkyl;
    • R5c is C1-C6 alkyl;
    • R11c and R12c each independently is C1-C6 alkyl, or R11c and R12c together with the carbon atom to which they are attached form C3-C12 cycloalkyl;
    • R14c and R15c each independently is H, halogen, or C1-C6 alkoxyl; and
    • R7c is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of R7cS; each R7cS independently is COOH, oxo, C1-C6 alkyl, C1-C6 haloalkyl, or 4- to 12-membered heterocycloalkyl, wherein the C1-C6 alkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of oxo, C1-C6 alkyl, or NR7cSaR7cSb; R7cSa and R7cSb each independently is H or C1-C6 alkyl, or R7cSa and R7cSb together with the nitrogen atom to which they are attached form C3-C6 heterocycloalkyl.


In some embodiments, the compound is of Formula (IA′″) or (IIA′″), a tautomer thereof, a pharmaceutically acceptable salt thereof, or a pharmaceutically acceptable salt of the tautomer, wherein:

    • R8c is C1-C6 alkyl;
    • R5c is C1-C6 alkyl;
    • R11c and R12c each independently is C1-C6 alkyl, or R11c and R12c together with the carbon atom to which they are attached form C3-C12 cycloalkyl;
    • R14c and R15c each independently is H, halogen, or C1-C6 alkoxyl; and
    • R7c is 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the 5- to 10-membered heteroaryl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of R7cS; each R7cS independently is C1-C6 alkyl or 4- to 12-membered heterocycloalkyl, wherein the C1-C6 alkyl or 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of NR7cSaR7cSb; R7cSa and R7cSb each independently is H or C1-C6 alkyl, or R7cSa and R7cSb together with the nitrogen atom to which they are attached form C3-C6 heterocycloalkyl.


In some embodiments, R8c is methyl or ethyl. In some embodiments, R8c is methyl.


In some embodiments, R5c is methyl, ethyl, n-propyl, or i-propyl. In some embodiments, R5c is methyl. In some embodiments, R5c is i-propyl.


In some embodiments, R11c and R12c each independently is C1-C6 alkyl. In some embodiments, R11c and R12c each independently is methyl, ethyl, n-propyl, i-propyl, n-butyl, i-butyl, s-butyl, t-butyl, pentyl, or hexyl. In some embodiments, R11c and R12c each independently is methyl, ethyl, n-propyl, or i-propyl.


In some embodiments, R11c and R12c together with the carbon atom to which they are attached form C3-C12 cycloalkyl. In some embodiments, R11c and R12c together with the carbon atom to which they are attached form cyclopropyl, cyclobutyl, cyclopentyl, or cyclohexyl. In some embodiments, R11c and R12c together with the carbon atom to which they are attached form cyclobutyl.


In some embodiments, at least one of R14c and R15c is halogen. In some embodiments, at least one of R14c and R15c is F or Cl. In some embodiments, at least one of R14c and R15c is F. In some embodiments, at least one of R14c and R15c is Cl.


In some embodiments, R14c is halogen. In some embodiments, R14c is F or Cl. In some embodiments, R14c is F. In some embodiments, R3c is Cl.


In some embodiments, R15c is halogen. In some embodiments, R15c is F or Cl. In some embodiments, R15c is F. In some embodiments, R15c is Cl.


In some embodiments, one of R14c and R15c is halogen, and the other one is H or C1-C6 alkoxyl. In some embodiments, at least one of R14c and R15c is F or Cl, and the other one is H or C1-C6 alkoxyl. In some embodiments, at least one of R14c and R15c is F or Cl, and the other one is H. In some embodiments, at least one of R14c and R15c is F or Cl, and the other one is methoxy.


In some embodiments, R14c is halogen, and R15c is H or C1-C6 alkoxyl. In some embodiments, R14c is F or Cl, and R15c is H or C1-C6 alkoxyl. In some embodiments, R14c is F or Cl, and R15c is H. In some embodiments, R14c is F or Cl, and R15c is methoxy.


In some embodiments, R15c is halogen, and R14c is H or C1-C6 alkoxyl. In some embodiments, R15c is F or Cl, and R14c is H or C1-C6 alkoxyl. In some embodiments, R15c is F or Cl, and R14c is H. In some embodiments, R15c is F or Cl, and R14c is methoxy.


In some embodiments, both R14c and R15c are halogen. In some embodiments, R14c and R15c each independently is F or Cl. In some embodiments, both R14c and R15c are F. In some embodiments, R14c is F, and R15c is Cl. In some embodiments, R15c is F, and R14c is Cl. In some embodiments, both R14c and R15c are Cl.


In some embodiments, R7c is 5- to 10-membered heteroaryl containing 1-4 heteroatoms selected from N, O, and S, wherein the 5- to 10-membered heteroaryl is optionally substituted with one or more of R7cS.


In some embodiments, R7c is 5-membered heteroaryl containing 3 of N, wherein the 5-membered heteroaryl is optionally substituted with one or more of R7cS.


In some embodiments, R7c is




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wherein n is 0, 1, or 2.


In some embodiments, R7c is




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wherein n is 0, 1, or 2.


In some embodiments, the compound is of Formula (IAa′″) or (IIAa′″):




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a tautomer thereof, a pharmaceutically acceptable salt thereof, or a pharmaceutically acceptable salt of the tautomer.


In some embodiments, the compound is of Formula (IAb′″) or (IIAb)′″:




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a tautomer thereof, a pharmaceutically acceptable salt thereof, or a pharmaceutically acceptable salt of the tautomer.


In some embodiments, n is 0 or 1. In some embodiments, n is 0. In some embodiments, n is 1.


In some embodiments, R7c is 4- to 12-membered heterocycloalkyl containing 1-4 heteroatoms selected from N, O, and S, wherein the 4- to 12-membered heterocycloalkyl is optionally substituted with one or more of R7cS.


In some embodiments, at least one R7cS is COOH.


In some embodiments, at least one R7cS is oxo.


In some embodiments, at least one R7cS is C1-C6 haloalkyl (e.g., methyl, ethyl, propyl, butyl, pental, or hexyl in which at least one H is substituted with a halogen (e.g., F, Cl, Br, or I)). In some embodiments, at least one R7cS is CH2F, CHF2, or CF3. In some embodiments, at least one R7cS is CF3.


In some embodiments, at least one R7cS is C1-C6 alkyl optionally substituted with one or more of oxo or NR7cSaR7cSb. In some embodiments, at least one R7cS is C1-C6 alkyl substituted with one oxo and one NR7cSaR7cSb.


In some embodiments, at least one R7cS is C1-C6 alkyl optionally substituted with one or more of NR7cSaR7cSb. In some embodiments, at least one R7cS is methyl optionally substituted with one or more of NR7cSaR7cSb. In some embodiments, at least one R7cS is




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In some embodiments, at least one R7cS is.




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In some embodiments, at least one R7cS is 4- to 12-membered heterocycloalkyl optionally substituted with one or more of oxo, C1-C6 alkyl, or NR7cSaR7cSb. In some embodiments, at least one R7cS is 4- to 12-membered heterocycloalkyl optionally substituted with one or more of C1-C6 alkyl.


In some embodiments, at least one R7cS is 4- to 12-membered heterocycloalkyl optionally substituted with one or more of NR7cSaR7cSb. In some embodiments, at least one R7cS is 5-membered heterocycloalkyl optionally substituted with one or more of NR7cSaR7cSb. In some embodiments, at least one R7cS is pyrrolidinyl optionally substituted with one or more of NR7cSaR7cSb. In some embodiments, at least one R7cS is pyrrolidinyl. In some embodiments, at least one R7cS is




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In some embodiments, at least one R7cS is




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H In some embodiments, at least one R7cS is




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In some embodiments, both of R7cSa and R7cSb are H. In some embodiments, one of R7cSa and R7cSb is H, and the other is C1-C6 alkyl. In some embodiments, one of R7cSa and R7cSb is H, and the other is methyl. In some embodiments, both of R7cSa and R7cSb are C1-C6 alkyl. In some embodiments, both of R7cSa and R7cSb are methyl.


In some embodiments, R7cSa and R7cSb together with the nitrogen atom to which they are attached form C3-C6 heterocycloalkyl. In some embodiments, R7cSa and R7cSb together with the nitrogen atom to which they are attached form C4 heterocycloalkyl. In some embodiments, R7cSa and R7cSb together with the nitrogen atom to which they are attached form




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In some embodiments, R7c is




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Exemplary EHMNT2 inhibitory compounds suitable for use in the methods of the present disclosure include, without limitation, compounds listed in Tables 1A-1E, 2-4, 4A, and 5, and tautomers and salts thereof.


The compounds of Tables 1A-1E are the compounds found in U.S. Application Nos. 62/323,602, 62/348,837, 62/402,997, and Ser. No. 15/601,888, and PCT Application No. PCT/US2017/027918, the entire contents of which are incorporated herein by reference.










TABLE 1A





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embedded image







245


embedded image







246


embedded image







247


embedded image







248


embedded image







249


embedded image







250


embedded image







251


embedded image







252


embedded image







253


embedded image







254


embedded image







255


embedded image







256


embedded image







257


embedded image







258


embedded image







259


embedded image







260


embedded image







261


embedded image







262a


embedded image







262b


embedded image







263


embedded image







264


embedded image







265


embedded image







266


embedded image







267


embedded image







268


embedded image







269


embedded image







271


embedded image







272


embedded image







273


embedded image







274


embedded image







275


embedded image







276


embedded image







277


embedded image







278


embedded image







279


embedded image







280


embedded image







281


embedded image







282


embedded image







283


embedded image







284


embedded image







285


embedded image







286


embedded image







287


embedded image







288


embedded image







289


embedded image







290


embedded image







291


embedded image







292


embedded image







293


embedded image







294


embedded image







295


embedded image







296


embedded image







297


embedded image







298


embedded image







299


embedded image







300


embedded image







301


embedded image







302


embedded image







303


embedded image







304


embedded image







305


embedded image







306


embedded image







307


embedded image







308


embedded image







309


embedded image







310


embedded image







311


embedded image







312


embedded image







313


embedded image







314


embedded image







315


embedded image







316


embedded image







317


embedded image







318


embedded image







319


embedded image







320


embedded image







321


embedded image







322


embedded image







323


embedded image







324


embedded image







325


embedded image







326


embedded image







327


embedded image







328


embedded image







329


embedded image







330


embedded image







331


embedded image







332


embedded image







333


embedded image







334


embedded image







335


embedded image







336


embedded image







337


embedded image



















TABLE 1B





Cmpd.



No.
Structure







338


embedded image







339


embedded image







340


embedded image







341


embedded image







342


embedded image







343


embedded image







344


embedded image







345


embedded image







346


embedded image







347


embedded image







348


embedded image







349


embedded image







350


embedded image







351


embedded image







352


embedded image







353


embedded image







354


embedded image







355


embedded image







356


embedded image







357


embedded image







358


embedded image







359


embedded image







360


embedded image







361


embedded image







362


embedded image







363


embedded image







364


embedded image







365


embedded image







366


embedded image







367


embedded image







368


embedded image







369


embedded image







370


embedded image







371


embedded image







372


embedded image







373


embedded image







374


embedded image







375


embedded image







376


embedded image







377


embedded image







378


embedded image







379


embedded image







380


embedded image







381


embedded image







382


embedded image







383


embedded image







384


embedded image







385


embedded image







386


embedded image







387


embedded image







388


embedded image







389


embedded image







390


embedded image







391


embedded image







392


embedded image







393


embedded image







394


embedded image







395


embedded image







396


embedded image







397


embedded image







398


embedded image







399


embedded image







400


embedded image







401


embedded image







402


embedded image







404


embedded image







405


embedded image







406


embedded image







407


embedded image







408


embedded image







409


embedded image







410


embedded image







411


embedded image







412


embedded image







413


embedded image







414


embedded image







415


embedded image







416


embedded image







417


embedded image







418


embedded image







419


embedded image







420


embedded image







421


embedded image







422


embedded image







423


embedded image







424


embedded image







425


embedded image







426


embedded image







427


embedded image







428


embedded image







429


embedded image







430


embedded image







431


embedded image







432


embedded image







433


embedded image







434


embedded image







435


embedded image







436


embedded image







437


embedded image







438


embedded image







439


embedded image







440


embedded image







441


embedded image







442


embedded image







443


embedded image







444


embedded image







445


embedded image







446


embedded image







447


embedded image







448


embedded image







449


embedded image







450


embedded image







451


embedded image







452


embedded image







453


embedded image







455


embedded image







456


embedded image







457


embedded image







458


embedded image







459


embedded image







460


embedded image







461


embedded image







462


embedded image







463


embedded image







464


embedded image







465


embedded image







466


embedded image







467


embedded image







468


embedded image







469


embedded image







470


embedded image







471


embedded image







472


embedded image







473


embedded image







474


embedded image







475


embedded image







476


embedded image







477


embedded image







478


embedded image







479


embedded image







480


embedded image







481


embedded image







482


embedded image







483


embedded image







484


embedded image







485


embedded image







486


embedded image







487


embedded image







488


embedded image







489


embedded image







490


embedded image







491


embedded image







492


embedded image







493


embedded image







494


embedded image







494a


embedded image







495


embedded image







496


embedded image







497


embedded image







498


embedded image







499


embedded image







500


embedded image







501


embedded image







502


embedded image







503


embedded image







504


embedded image







505


embedded image







506


embedded image







507


embedded image







508


embedded image







509


embedded image







510


embedded image







511


embedded image







512


embedded image







513


embedded image







514


embedded image







515


embedded image







516


embedded image







517a


embedded image







517b


embedded image



















TABLE 1C





Comd.



No.
Structure







270


embedded image







518


embedded image







519


embedded image







520


embedded image







521


embedded image







522


embedded image







523


embedded image







524


embedded image







525


embedded image







526


embedded image







527


embedded image







528


embedded image







529


embedded image







530


embedded image







531


embedded image







532


embedded image







533


embedded image







534


embedded image







535


embedded image







536


embedded image







537


embedded image







538


embedded image







539


embedded image







540


embedded image







541


embedded image







542


embedded image







543


embedded image







544


embedded image







545


embedded image







546


embedded image







547


embedded image







548


embedded image







549


embedded image







550


embedded image







551


embedded image







552


embedded image







553


embedded image







554


embedded image







555


embedded image







556


embedded image







557


embedded image







558


embedded image







559


embedded image







560


embedded image







561


embedded image







562


embedded image







563


embedded image







564


embedded image







565


embedded image







566


embedded image







567


embedded image







568


embedded image







569


embedded image







570


embedded image







571


embedded image







572


embedded image







573


embedded image







574


embedded image







575


embedded image







576


embedded image







577


embedded image







578


embedded image







579


embedded image







580


embedded image







581


embedded image







582


embedded image







583


embedded image







584


embedded image







585


embedded image







586


embedded image







587


embedded image







588


embedded image







589


embedded image







590


embedded image







591


embedded image







592


embedded image







593


embedded image







594


embedded image







595


embedded image







596


embedded image







597


embedded image







598


embedded image







599


embedded image







600


embedded image







601


embedded image







602


embedded image







603


embedded image







604


embedded image







605


embedded image







606


embedded image







607


embedded image







608


embedded image







609


embedded image







610


embedded image







611


embedded image







612


embedded image







613


embedded image







614


embedded image







616


embedded image







617


embedded image







618


embedded image







619


embedded image







620


embedded image







621


embedded image







622


embedded image







623


embedded image







624


embedded image







625


embedded image







626


embedded image







627


embedded image







628


embedded image







629


embedded image







630


embedded image







631


embedded image







632


embedded image







633


embedded image







634


embedded image







635


embedded image







636


embedded image







637


embedded image







638


embedded image







639


embedded image







640


embedded image







641


embedded image







642


embedded image







643


embedded image







644


embedded image







645


embedded image







646


embedded image







647


embedded image







648


embedded image







649


embedded image







650


embedded image







651


embedded image







652


embedded image







653


embedded image







654


embedded image







655


embedded image







656


embedded image







657


embedded image







658


embedded image







659


embedded image







660


embedded image







661


embedded image







662


embedded image







663


embedded image







664


embedded image







665


embedded image







666


embedded image







667


embedded image







668


embedded image







669


embedded image







670


embedded image







671


embedded image







672


embedded image







673


embedded image







674


embedded image







675


embedded image







676


embedded image







677


embedded image







678


embedded image







679


embedded image







680


embedded image







681


embedded image







682


embedded image







683


embedded image







684


embedded image







685


embedded image







686


embedded image







687


embedded image







688


embedded image







689


embedded image







690


embedded image







691


embedded image







692


embedded image







693


embedded image







694


embedded image







695


embedded image







696


embedded image







697


embedded image







698


embedded image







699


embedded image







700


embedded image







701


embedded image







702


embedded image







703


embedded image







704


embedded image







705


embedded image







706


embedded image







707


embedded image







708


embedded image







709


embedded image







710


embedded image







711


embedded image







712


embedded image







713


embedded image







714


embedded image







715


embedded image







716


embedded image







717


embedded image







718


embedded image







719


embedded image







720


embedded image







721


embedded image







722


embedded image







723


embedded image







724


embedded image







725


embedded image







726


embedded image







727


embedded image







728


embedded image







729


embedded image







730


embedded image







731


embedded image







732


embedded image







733


embedded image







734


embedded image







735


embedded image







736


embedded image







737


embedded image







738


embedded image







739


embedded image







740


embedded image







741


embedded image







742


embedded image







743


embedded image







744


embedded image







745


embedded image







746


embedded image







747


embedded image







748


embedded image







749


embedded image







750


embedded image







751


embedded image







752


embedded image







753


embedded image







754


embedded image







755


embedded image







756


embedded image







757


embedded image







758


embedded image







759


embedded image







760


embedded image







761


embedded image







762


embedded image







763


embedded image







764


embedded image







765


embedded image



















TABLE 1D





Cmpd.



No.
Structure







 784


embedded image







 786


embedded image







 787


embedded image







 788


embedded image







 789


embedded image







 790


embedded image







 791


embedded image







 792


embedded image







 793


embedded image







 794


embedded image







 795


embedded image







 796


embedded image







 797


embedded image







 798


embedded image







 799


embedded image







 800


embedded image







 801


embedded image







 802


embedded image







 803


embedded image







 804


embedded image







 805


embedded image







 806


embedded image







 807


embedded image







 808


embedded image







 809


embedded image







 810


embedded image







 811


embedded image







 812


embedded image







 813


embedded image







 814


embedded image







 815


embedded image







 816


embedded image







 817


embedded image







 820


embedded image







 821


embedded image







 822


embedded image







 823


embedded image







 824


embedded image







 825


embedded image







 826


embedded image







 827


embedded image







 828


embedded image







 832


embedded image







 833


embedded image







 834


embedded image







 836


embedded image







 837


embedded image







 838


embedded image







 839


embedded image







 840


embedded image







 841


embedded image







 842


embedded image







 844


embedded image







 845


embedded image







 846


embedded image







 847


embedded image







 848


embedded image







 849


embedded image







 850


embedded image







 851


embedded image







 852


embedded image







 853


embedded image







 854


embedded image







 855


embedded image







 856


embedded image







 857


embedded image







 858


embedded image







 859


embedded image







 860


embedded image







 861


embedded image







 862


embedded image







 863


embedded image







 864


embedded image







 865


embedded image







 866


embedded image







 867


embedded image







 868


embedded image







 869


embedded image







 870


embedded image







 871


embedded image







 872


embedded image







 873


embedded image







 874


embedded image







 875


embedded image







 876


embedded image







 877


embedded image







 878


embedded image







 879


embedded image







 881


embedded image







 882


embedded image







 883


embedded image







 884


embedded image







 885


embedded image







 886


embedded image







 887


embedded image







 888


embedded image







 890


embedded image







 891


embedded image







 892


embedded image







 893


embedded image







 894


embedded image







 895


embedded image







 896


embedded image







 897


embedded image







 898


embedded image







 899


embedded image







 900


embedded image







 901


embedded image







 902


embedded image







 903


embedded image







 904


embedded image







 905


embedded image







 906


embedded image







 907


embedded image







 908


embedded image







 909


embedded image







 910


embedded image







 911


embedded image







 912


embedded image







 913


embedded image







 914


embedded image







 915


embedded image







 916


embedded image







 917


embedded image







 918


embedded image







 919


embedded image







 920


embedded image







 921


embedded image







 922


embedded image







 927


embedded image







 928


embedded image







 929


embedded image







 930


embedded image







 931


embedded image







 932


embedded image







 933


embedded image







 934


embedded image







 935


embedded image







 936


embedded image







 937


embedded image







 938


embedded image







 939


embedded image







 940


embedded image







 941


embedded image







 942


embedded image







 943


embedded image







 944


embedded image







 945


embedded image







 946


embedded image







 947


embedded image







 948


embedded image







 949


embedded image







 950


embedded image







 951


embedded image







 961


embedded image







 962


embedded image







 963


embedded image







 964


embedded image







 965


embedded image







 966


embedded image







 967


embedded image







 968


embedded image







 969


embedded image







 970


embedded image







 971


embedded image







 972


embedded image







 974


embedded image







 975


embedded image







 976


embedded image







 977


embedded image







 983


embedded image







 985


embedded image







 986


embedded image







 989


embedded image







 990


embedded image







 991


embedded image







 992


embedded image







 993


embedded image







 994


embedded image







 997


embedded image







 998


embedded image







 999


embedded image







1000


embedded image







1001


embedded image







1002


embedded image







1004


embedded image







1005


embedded image







1006


embedded image







1007


embedded image







1008


embedded image







1009


embedded image







1010


embedded image







1011


embedded image







1012


embedded image







1013


embedded image







1014


embedded image







1015


embedded image







1016


embedded image







1017


embedded image







1018


embedded image







1019


embedded image







1020


embedded image







1021


embedded image







1022


embedded image







1023


embedded image







1024


embedded image







1025


embedded image







1026


embedded image







1027


embedded image







1028


embedded image







1029


embedded image







1030


embedded image







1031


embedded image







1032


embedded image







1033


embedded image







1034


embedded image







1035


embedded image







1036


embedded image







1037


embedded image







1038


embedded image







1039


embedded image







1040


embedded image







1041


embedded image







1042


embedded image



















TABLE 1E





Cmpd.



No.
Structure







1043


embedded image







1044


embedded image







1045


embedded image







1046


embedded image







1047


embedded image







1048


embedded image







1049


embedded image







1050


embedded image







1051


embedded image







1052


embedded image







1053


embedded image







1054


embedded image







1055


embedded image







1056


embedded image







1057


embedded image







1058


embedded image







1059


embedded image







1060


embedded image







1061


embedded image







1062


embedded image







1063


embedded image







1064


embedded image







1065


embedded image







1066


embedded image







1067


embedded image







1068


embedded image







1069


embedded image







1070


embedded image







1071


embedded image







1072


embedded image







1073


embedded image







1074


embedded image







1075


embedded image







1076


embedded image







1077


embedded image







1078


embedded image







1079


embedded image







1080


embedded image







1081


embedded image







1082


embedded image







1083


embedded image







1084


embedded image







1085


embedded image







1086


embedded image







1087


embedded image







1088


embedded image







1089


embedded image







1090


embedded image







1091


embedded image







1092


embedded image







1093


embedded image







1094


embedded image







1095


embedded image







1096


embedded image







1097


embedded image







1098


embedded image







1099


embedded image







1100


embedded image







1101


embedded image







1102


embedded image







1103


embedded image







1104


embedded image







1105


embedded image







1106


embedded image







1107


embedded image







1108


embedded image







1109


embedded image







1110


embedded image







1111


embedded image







1112


embedded image







1113


embedded image







1114


embedded image







1115


embedded image







1116


embedded image







1117


embedded image







1118


embedded image



















TABLE 2





Compound



No.
Structure







A1


embedded image







A2


embedded image







A3


embedded image







A4


embedded image







A5


embedded image







A6


embedded image







A7


embedded image







A8


embedded image







A9


embedded image







A10


embedded image







A11


embedded image







A12


embedded image







A13


embedded image







A14


embedded image







A15


embedded image







A16


embedded image







A17


embedded image







A18


embedded image







A19


embedded image







A20


embedded image







A21


embedded image







A22


embedded image







A23


embedded image







A24


embedded image







A25


embedded image







A26


embedded image







A27


embedded image







A28


embedded image







A29


embedded image







A30


embedded image







A31


embedded image







A32


embedded image







A33


embedded image







A34


embedded image







A35


embedded image







A36


embedded image







A37


embedded image







A38


embedded image







A39


embedded image







A40


embedded image







A41


embedded image







A42


embedded image







A43


embedded image







A44


embedded image







A45


embedded image







A46


embedded image







A47


embedded image







A48


embedded image







A49


embedded image







A50


embedded image







A51


embedded image







A52


embedded image







A53


embedded image







A54


embedded image







A55


embedded image







A56


embedded image







A57


embedded image







A58


embedded image







A59


embedded image







A60


embedded image







A61


embedded image







A62


embedded image







A63


embedded image







A64


embedded image







A65


embedded image







A66


embedded image







A67


embedded image







A68


embedded image







A69


embedded image







A70


embedded image







A71


embedded image







A72


embedded image







A73


embedded image







A74


embedded image







A75


embedded image







A76


embedded image







A77


embedded image







A78


embedded image







A79


embedded image







A80


embedded image







A81


embedded image







A82


embedded image







A83


embedded image







A84


embedded image







A85


embedded image







A86


embedded image







A87


embedded image







A88


embedded image







A89


embedded image







A90


embedded image







A91


embedded image







A92


embedded image







A93


embedded image







A94


embedded image







A95


embedded image







A96


embedded image







A97


embedded image







A98


embedded image







A99


embedded image







A100


embedded image







A101


embedded image







A106


embedded image







A107


embedded image







A110


embedded image







A111


embedded image







A112


embedded image







A113


embedded image







A114


embedded image







A115


embedded image







A116


embedded image







A117


embedded image







A118


embedded image







A119


embedded image







A120


embedded image







A121


embedded image







A122


embedded image







A123


embedded image







A124


embedded image







A125


embedded image







A126


embedded image







A127


embedded image







A128


embedded image







A129


embedded image







A130


embedded image







A131


embedded image







A132


embedded image







A133


embedded image







A134


embedded image







A135


embedded image







A136


embedded image







A137


embedded image







A138


embedded image







A139


embedded image







A140


embedded image







A141


embedded image











The compounds of Table 4 are the compounds found in U.S. Application Nos. 62/402,863 and 62/509,620, and PCT Appl'n No. PCT/US2017/054468, the entire contents of which are incorporated herein by reference.










TABLE 3





Cmpd.



No.
Structure







B1


embedded image







B2


embedded image







B3


embedded image







B4


embedded image







B5


embedded image







B6


embedded image







B7


embedded image







B8


embedded image







B9


embedded image







B10


embedded image







B11


embedded image







B12


embedded image







B13


embedded image







B14


embedded image







B15


embedded image







B16


embedded image







B17


embedded image







B18


embedded image







B19


embedded image







B20


embedded image







B21


embedded image







B22


embedded image







B23


embedded image







B24


embedded image







B25


embedded image







B26


embedded image







B27


embedded image







B28


embedded image







B29


embedded image







B30


embedded image







B31


embedded image







B32


embedded image







B33


embedded image







B34


embedded image







B35


embedded image







B36


embedded image







B37


embedded image







B38


embedded image







B39


embedded image







B40


embedded image







B41


embedded image







B42


embedded image







B43


embedded image







B44


embedded image







B45


embedded image







B46


embedded image







B47


embedded image







B48


embedded image







B49


embedded image







B50


embedded image







B51


embedded image







B52


embedded image







B53


embedded image







B54


embedded image







B55


embedded image







B56


embedded image







B57


embedded image







B58


embedded image







B59


embedded image







B60


embedded image







B61


embedded image







B62


embedded image







B63


embedded image







B64


embedded image







B65


embedded image







B66


embedded image







B67


embedded image







B68


embedded image







B69


embedded image







B70


embedded image







B71


embedded image







B72


embedded image







B73


embedded image







B74


embedded image







B75


embedded image







B76


embedded image







B77


embedded image







B78


embedded image







B79


embedded image







B80


embedded image







B81


embedded image







B82


embedded image







B83


embedded image







B84


embedded image







B85


embedded image







B86


embedded image







B87


embedded image







B88


embedded image







B89


embedded image







B90


embedded image







B91


embedded image







B92


embedded image







B93


embedded image







B94


embedded image







B95


embedded image







B96


embedded image







B97


embedded image







B98


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B99


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B100


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B101


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B102


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B103


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B104


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B105


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B106


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B107


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B108


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B109


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B110


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B111


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B112


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B113


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B114


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B115


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B116


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B117


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B118


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B119


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B120


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B121


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B122


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B123


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B124


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B125


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B126


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B127


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B128


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B129


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B130


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B131


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B132


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B133


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B134


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B135


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B136


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B137


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B138


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B139


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B140


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B141


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B142


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B143


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B144


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B145


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B146


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B147


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B148


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B149


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B150


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B151


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B152


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B153


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B154


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B155


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B156


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B157


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B158


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B159


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B160


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B161


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B162


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B163


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B164


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B165


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B166


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B167


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B168


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B169


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B170


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B171


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B172


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B173


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B174


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B175


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B176


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B177


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B178


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B179


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B180


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B181


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B182


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B183


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B184


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B185


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B186


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B187


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B188


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B191


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B192


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B193


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B194


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B195


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B196


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B197


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B198


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B199


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B200


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B201


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B202


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B203


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B204


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B205


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B206


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B207


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B208


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B209


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B210


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B211


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B212


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B213


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B214


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B215


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B216


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B217


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B218


embedded image







B219


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B220


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B221


embedded image







B222


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B223


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B224


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B225


embedded image







B226


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B227


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B228


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B229


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B230


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B231


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B232


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B233


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B234


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B235


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B236


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B237


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B238


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B239


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B240


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B241


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B242


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B243


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B244


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B245


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B246


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B247


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B248


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B249


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B250


embedded image







B251


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B252


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B253


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B254


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B255


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B256


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B257


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B258


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B259


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B260


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B261


embedded image







B262


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B269


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B271


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B274


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B276


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B277


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B278


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B279


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B280


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B281


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B282


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B283


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B284


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B285


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B286


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B287


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B288


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B289


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B290


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B291


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The compounds of Table 3 are the compounds found in U.S. Application Nos. 62/436,139 and 62/517,840, and PCT Application No. PCT/US20170067192, the entire contents of which are incorporated herein by reference.










TABLE 4





Compound



No.
Structure







C1


embedded image







C2


embedded image







C3


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C4


embedded image







C5


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C6


embedded image







C7


embedded image







C8


embedded image







C9


embedded image







C10


embedded image







C11


embedded image







C12


embedded image







C13


embedded image







C14


embedded image







C15


embedded image







C16


embedded image







C17


embedded image







C18


embedded image







C19


embedded image







C20


embedded image







C21


embedded image







C22


embedded image







C23


embedded image







C24


embedded image







C25


embedded image







C26


embedded image







C27


embedded image







C28


embedded image







C29


embedded image







C30


embedded image







C31


embedded image







C32


embedded image







C33


embedded image







C34


embedded image







C35


embedded image







C36


embedded image







C37


embedded image







C38


embedded image







C39


embedded image







C40


embedded image







C41


embedded image







C42


embedded image







C43


embedded image







C44


embedded image







C45


embedded image







C46


embedded image







C47


embedded image







C48


embedded image







C49


embedded image







C50


embedded image







C51


embedded image







C52


embedded image







C53


embedded image







C54


embedded image







C55


embedded image







C56


embedded image







C57


embedded image







C58


embedded image







C59


embedded image







C60


embedded image







C61


embedded image







C62


embedded image







C63


embedded image







C64


embedded image







C65


embedded image







C66


embedded image







C67


embedded image







C68


embedded image







C69


embedded image







C70


embedded image







C71


embedded image







C72


embedded image







C73


embedded image







C74


embedded image







C75


embedded image







C76


embedded image







C77


embedded image







C78


embedded image







C79


embedded image







C79S


embedded image







C79R


embedded image







C80


embedded image







C80S


embedded image







C80R


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The compounds of Table 4 are the compounds found in U.S. Application No. 62/573,442 and 62/746,495, and PCT Application No. PCT/US2018/056333, the entire contents of which are incorporated herein by reference










TABLE 4A





Cmpd.



No.
Structure







CA1


embedded image







CA2


embedded image







CA2S


embedded image







CA2R


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CA3


embedded image







CA4


embedded image







CA4S


embedded image







CA4R


embedded image







CA5


embedded image







CA6


embedded image







CA7


embedded image







CA8


embedded image







CA9


embedded image







CA10


embedded image







CA11


embedded image







CA12


embedded image







CA13


embedded image







CA14


embedded image







CA15


embedded image







CA16


embedded image







CA17


embedded image







CA18


embedded image







CA19


embedded image







CA20


embedded image







CA21


embedded image







CA22


embedded image







CA23


embedded image







CA24


embedded image







CA25


embedded image







CA26


embedded image







CA27


embedded image







CA27R


embedded image







CA27S


embedded image







CA28


embedded image







CA28R


embedded image







CA28S


embedded image







CA29


embedded image







CA30


embedded image







CA31


embedded image







CA31S


embedded image







CA31R


embedded image







CA32


embedded image







CA33


embedded image







CA33S


embedded image







CA33R


embedded image







CA34


embedded image







CA35


embedded image







CA35S


embedded image







CA35R


embedded image







CA36


embedded image







CA37


embedded image







CA38


embedded image







CA39


embedded image







CA39S


embedded image







CA39R


embedded image







CA40


embedded image







CA40S


embedded image







CA40R


embedded image







CA41


embedded image







CA41S


embedded image







CA41R


embedded image







CA42


embedded image







CA43


embedded image







CA43S


embedded image







CA43R


embedded image







CA44


embedded image







CA45


embedded image







CA46


embedded image







CA46S


embedded image







CA46R


embedded image







CA47


embedded image







CA48


embedded image







CA49


embedded image







CA50


embedded image







CA51


embedded image







CA52


embedded image







CA52S


embedded image







CA52R


embedded image







CA53


embedded image







CA53S


embedded image







CA53R


embedded image







CA54


embedded image







CA55


embedded image







CA56


embedded image







CA57


embedded image







CA58


embedded image







CA59


embedded image







CA59S


embedded image







CA59R


embedded image







CA60


embedded image







CA61


embedded image







CA62


embedded image







CA63


embedded image







CA64


embedded image







CA65


embedded image







CA66


embedded image







CA67


embedded image







CA68


embedded image







CA69


embedded image







CA70


embedded image







CA71


embedded image







CA72


embedded image







CA72S


embedded image







CA72R


embedded image







CA73


embedded image







CA73S


embedded image







CA73R


embedded image







CA74


embedded image







CA75


embedded image







CA76


embedded image











The compounds of Table 4A are the compounds found in U.S. Application Nos. 62/681,804, 62/746,252, and 62/746,495, and PCT Application No. PCT/US2018/056333, the entire contents of which are incorporated herein by reference.










TABLE 5





Compound No.
Structure







D1


embedded image







D1R


embedded image







D1S


embedded image







D2


embedded image







D3


embedded image







D4


embedded image







D4R


embedded image







D4S


embedded image







D5


embedded image







D5R


embedded image







D5S


embedded image







D6


embedded image







D7


embedded image











The compounds of Table 5 are the compounds found in U.S. Application No. 62/573,917, and PCT Application No. PCT/US2018/056428, the entire contents of which are incorporated herein by reference.


In some embodiments, the EHMT2 inhibitor is a compound selected from Compound Nos. A75, CA51, CA70, D1R, D2, D3, D4R, D5R, D6, and D7, tautomers thereof, pharmaceutically acceptable salts thereof, and pharmaceutically acceptable salts of the tautomers.


In some embodiments, the EHMT2 inhibitor is a compound selected from Compound Nos. A75, CA51, CA70, D1R, D2, D3, D4R, D5R, D6, and D7, and pharmaceutically acceptable salts thereof.


In some embodiments, the EHMT2 inhibitor is a compound selected from Compound Nos. A75, CA51, CA70, D1R, D2, D3, D4R, D5R, D6, and D7.


In some embodiments, the EHMT2 inhibitor is Compound No. A75 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. A75.


In some embodiments, the EHMT2 inhibitor is Compound No. CA51 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. CA51.


In some embodiments, the EHMT2 inhibitor is Compound No. CA70 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. CA70.


In some embodiments, the EHMT2 inhibitor is Compound No. D1R or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D1R.


In some embodiments, the EHMT2 inhibitor is Compound No. D2 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D2


In some embodiments, the EHMT2 inhibitor is Compound No. D3 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D3.


In some embodiments, the EHMT2 inhibitor is Compound No. D4R or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D4R.


In some embodiments, the EHMT2 inhibitor is Compound No. D5R or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D5R.


In some embodiments, the EHMT2 inhibitor is Compound No. D6 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D6.


In some embodiments, the EHMT2 inhibitor is Compound No. D7 or a pharmaceutically acceptable salt thereof.


In some embodiments, the EHMT2 inhibitor is Compound No. D7.


As used herein, “alkyl”, “C1, C2, C3, C4, C5 or C6 alkyl” or “C1-C6 alkyl” is intended to include C1, C2, C3, C4, C5 or C6 straight chain (linear) saturated aliphatic hydrocarbon groups and C3, C4, C5 or C6 branched saturated aliphatic hydrocarbon groups. For example, C1-C6 alkyl is intended to include C1, C2, C3, C4, C5 and C6 alkyl groups. Examples of alkyl include, moieties having from one to six carbon atoms, such as, but not limited to, methyl, ethyl, n-propyl, i-propyl, n-butyl, s-butyl, t-butyl, n-pentyl, s-pentyl or n-hexyl.


In certain embodiments, a straight chain or branched alkyl has six or fewer carbon atoms (e.g., C1-C6 for straight chain, C3-C6 for branched chain), and in another embodiment, a straight chain or branched alkyl has four or fewer carbon atoms.


As used herein, the term “cycloalkyl” refers to a saturated or unsaturated nonaromatic hydrocarbon mono- or multi-ring (e.g., fused, bridged, or spiro rings) system having 3 to 30 carbon atoms (e.g., C3-C12, C3-C10, or C3-C8). Examples of cycloalkyl include, but are not limited to, cyclopropyl, cyclobutyl, cyclopentyl, cyclohexyl, cycloheptyl, cyclooctyl, cyclopentenyl, cyclohexenyl, cycloheptenyl, 1,2,3,4-tetrahydronaphthalenyl, and adamantyl.


The term “heterocycloalkyl” refers to a saturated, partially unsaturated, or unsaturated nonaromatic 3-8 membered monocyclic, 7-12 membered bicyclic (fused, bridged, or spiro rings), or 11-14 membered tricyclic ring system (fused, bridged, or spiro rings) having one or more heteroatoms (such as O, N, S, P, or Se), e.g., 1 or 1-2 or 1-3 or 1-4 or 1-5 or 1-6 heteroatoms, or e.g., 1, 2, 3, 4, 5, or 6 heteroatoms, independently selected from the group consisting of nitrogen, oxygen and sulfur, unless specified otherwise. Examples of heterocycloalkyl groups include, but are not limited to, piperidinyl, piperazinyl, pyrrolidinyl, dioxanyl, tetrahydrofuranyl, isoindolinyl, indolinyl, imidazolidinyl, pyrazolidinyl, oxazolidinyl, isoxazolidinyl, triazolidinyl, oxiranyl, azetidinyl, oxetanyl, thietanyl, 1,2,3,6-tetrahydropyridinyl, tetrahydropyranyl, dihydropyranyl, pyranyl, morpholinyl, tetrahydrothiopyranyl, 1,4-diazepanyl, 1,4-oxazepanyl, 2-oxa-5-azabicyclo[2.2.1]heptanyl, 2,5-diazabicyclo[2.2.1]heptanyl, 2-oxa-6-azaspiro[3.3]heptanyl, 2,6-diazaspiro[3.3]heptanyl, 1,4-dioxa-8-azaspiro[4.5]decanyl, 1,4-dioxaspiro[4.5]decanyl, 1-oxaspiro[4.5]decanyl, 1-azaspiro[4.5]decanyl, 3′H-spiro[cyclohexane-1,1′-isobenzofuran]-yl, 7′H-spiro[cyclohexane-1,5′-furo[3,4-b]pyridin]-yl, 3′H-spiro[cyclohexane-1,1′-furo[3,4-c]pyridin]-yl, 3-azabicyclo[3.1.0]hexanyl, 3-azabicyclo[3.1.0]hexan-3-yl, 1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazolyl, 3,4,5,6,7,8-hexahydropyrido[4,3-d]pyrimidinyl, 4,5,6,7-tetrahydro-1H-pyrazolo[3,4-c]pyridinyl, 5,6,7,8-tetrahydropyrido[4,3-d]pyrimidinyl, 2-azaspiro[3.3]heptanyl, 2-methyl-2-azaspiro[3.3]heptanyl, 2-azaspiro[3.5]nonanyl, 2-methyl-2-azaspiro[3.5]nonanyl, 2-azaspiro[4.5]decanyl, 2-methyl-2-azaspiro[4.5]decanyl, 2-oxa-azaspiro[3.4]octanyl, 2-oxa-azaspiro[3.4]octan-6-yl, and the like. In the case of multicyclic non-aromatic rings, only one of the rings needs to be non-aromatic (e.g., 1,2,3,4-tetrahydronaphthalenyl or 2,3-dihydroindole).


The term “optionally substituted alkyl” refers to unsubstituted alkyl or alkyl having designated substituents replacing one or more hydrogen atoms on one or more carbons of the hydrocarbon backbone. Such substituents can include, for example, alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, phosphate, phosphonato, phosphinato, amino (including alkylamino, dialkylamino, arylamino, diarylamino and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety.


As used herein, “alkyl linker” or “alkylene linker” is intended to include C1, C2, C3, C4, C5 or C6 straight chain (linear) saturated divalent aliphatic hydrocarbon groups and C3, C4, C5 or C6 branched saturated aliphatic hydrocarbon groups. For example, C1-C6 alkylene linker is intended to include C1, C2, C3, C4, C5 and C6 alkylene linker groups. Examples of alkylene linker include, moieties having from one to six carbon atoms, such as, but not limited to, methyl (—CH2—), ethyl (—CH2CH2—), n-propyl (—CH2CH2CH2—), i-propyl (—CHCH3CH2—), n-butyl (—CH2CH2CH2CH2—), s-butyl (—CHCH3CH2CH2—), i-butyl (—C(CH3)2CH2—), n-pentyl (—CH2CH2CH2CH2CH2—), s-pentyl (—CHCH3CH2CH2CH2—) or n-hexyl (—CH2CH2CH2CH2CH2CH2—).


“Alkenyl” includes unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but that contain at least one double bond. For example, the term “alkenyl” includes straight chain alkenyl groups (e.g., ethenyl, propenyl, butenyl, pentenyl, hexenyl, heptenyl, octenyl, nonenyl, decenyl), and branched alkenyl groups.


In certain embodiments, a straight chain or branched alkenyl group has six or fewer carbon atoms in its backbone (e.g., C2-C6 for straight chain, C3-C6 for branched chain). The term “C2-C6” includes alkenyl groups containing two to six carbon atoms. The term “C3-C6” includes alkenyl groups containing three to six carbon atoms.


The term “optionally substituted alkenyl” refers to unsubstituted alkenyl or alkenyl having designated substituents replacing one or more hydrogen atoms on one or more hydrocarbon backbone carbon atoms. Such substituents can include, for example, alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, phosphate, phosphonato, phosphinato, amino (including alkylamino, dialkylamino, arylamino, diarylamino and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety.


“Alkynyl” includes unsaturated aliphatic groups analogous in length and possible substitution to the alkyls described above, but which contain at least one triple bond. For example, “alkynyl” includes straight chain alkynyl groups (e.g., ethynyl, propynyl, butynyl, pentynyl, hexynyl, heptynyl, octynyl, nonynyl, decynyl), and branched alkynyl groups. In certain embodiments, a straight chain or branched alkynyl group has six or fewer carbon atoms in its backbone (e.g., C2-C6 for straight chain, C3-C6 for branched chain). The term “C2-C6” includes alkynyl groups containing two to six carbon atoms. The term “C3-C6” includes alkynyl groups containing three to six carbon atoms. As used herein, “C2-C6 alkenylene linker” or “C2-C6 alkynylene linker” is intended to include C2, C3, C4, C5 or C6 chain (linear or branched) divalent unsaturated aliphatic hydrocarbon groups. For example, C2-C6 alkenylene linker is intended to include C2, C3, C4, C5 and C6 alkenylene linker groups.


The term “optionally substituted alkynyl” refers to unsubstituted alkynyl or alkynyl having designated substituents replacing one or more hydrogen atoms on one or more hydrocarbon backbone carbon atoms. Such substituents can include, for example, alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, phosphate, phosphonato, phosphinato, amino (including alkylamino, dialkylamino, arylamino, diarylamino and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety.


Other optionally substituted moieties (such as optionally substituted cycloalkyl, heterocycloalkyl, aryl, or heteroaryl) include both the unsubstituted moieties and the moieties having one or more of the designated substituents. For example, substituted heterocycloalkyl includes those substituted with one or more alkyl groups, such as 2,2,6,6-tetramethyl-piperidinyl and 2,2,6,6-tetramethyl-1,2,3,6-tetrahydropyridinyl.


“Aryl” includes groups with aromaticity, including “conjugated,” or multicyclic systems with one or more aromatic rings and do not contain any heteroatom in the ring structure. Examples include phenyl, naphthalenyl, etc.


“Heteroaryl” groups are aryl groups, as defined above, except having from one to four heteroatoms in the ring structure, and may also be referred to as “aryl heterocycles” or “heteroaromatics.” As used herein, the term “heteroaryl” is intended to include a stable 5-, 6-, or 7-membered monocyclic or 7-, 8-, 9-, 10-, 11- or 12-membered bicyclic aromatic heterocyclic ring which consists of carbon atoms and one or more heteroatoms, e.g., 1 or 1-2 or 1-3 or 1-4 or 1-5 or 1-6 heteroatoms, or e.g., 1, 2, 3, 4, 5, or 6 heteroatoms, independently selected from the group consisting of nitrogen, oxygen and sulfur. The nitrogen atom may be substituted or unsubstituted (i.e., N or NR wherein R is H or other substituents, as defined). The nitrogen and sulfur heteroatoms may optionally be oxidized (i.e., N→O and S(O)p, where p=1 or 2). It is to be noted that total number of S and O atoms in the aromatic heterocycle is not more than 1.


Examples of heteroaryl groups include pyrrole, furan, thiophene, thiazole, isothiazole, imidazole, triazole, tetrazole, pyrazole, oxazole, isoxazole, pyridine, pyrazine, pyridazine, pyrimidine, and the like.


Furthermore, the terms “aryl” and “heteroaryl” include multicyclic aryl and heteroaryl groups, e.g., tricyclic, bicyclic, e.g., naphthalene, benzoxazole, benzodioxazole, benzothiazole, benzoimidazole, benzothiophene, quinoline, isoquinoline, naphthrydine, indole, benzofuran, purine, benzofuran, deazapurine, indolizine.


The cycloalkyl, heterocycloalkyl, aryl, or heteroaryl ring can be substituted at one or more ring positions (e.g., the ring-forming carbon or heteroatom such as N) with such substituents as described above, for example, alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkoxy, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, alkylaminocarbonyl, aralkylaminocarbonyl, alkenylaminocarbonyl, alkylcarbonyl, arylcarbonyl, aralkylcarbonyl, alkenylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylthiocarbonyl, phosphate, phosphonato, phosphinato, amino (including alkylamino, dialkylamino, arylamino, diarylamino and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety. Aryl and heteroaryl groups can also be fused or bridged with alicyclic or heterocyclic rings, which are not aromatic so as to form a multicyclic system (e.g., tetralin, methylenedioxyphenyl such as benzo[d][1,3]dioxole-5-yl).


As used herein, “carbocycle” or “carbocyclic ring” is intended to include any stable monocyclic, bicyclic or tricyclic ring having the specified number of carbons, any of which may be saturated, unsaturated, or aromatic. Carbocycle includes cycloalkyl and aryl. For example, a C3-C14 carbocycle is intended to include a monocyclic, bicyclic or tricyclic ring having 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13 or 14 carbon atoms. Examples of carbocycles include, but are not limited to, cyclopropyl, cyclobutyl, cyclobutenyl, cyclopentyl, cyclopentenyl, cyclohexyl, cycloheptenyl, cycloheptyl, cycloheptenyl, adamantyl, cyclooctyl, cyclooctenyl, cyclooctadienyl, fluorenyl, phenyl, naphthyl, indanyl, adamantyl and tetrahydronaphthyl. Bridged rings are also included in the definition of carbocycle, including, for example, [3.3.0]bicyclooctane, [4.3.0]bicyclononane, and [4.4.0] bicyclodecane and [2.2.2] bicyclooctane. A bridged ring occurs when one or more carbon atoms link two non-adjacent carbon atoms. In some embodiments, bridge rings are one or two carbon atoms. It is noted that a bridge always converts a monocyclic ring into a tricyclic ring. When a ring is bridged, the substituents recited for the ring may also be present on the bridge. Fused (e.g., naphthyl, tetrahydronaphthyl) and spiro rings are also included.


As used herein, “heterocycle” or “heterocyclic group” includes any ring structure (saturated, unsaturated, or aromatic) which contains at least one ring heteroatom (e.g., 1-4 heteroatoms selected from N, O and S). Heterocycle includes heterocycloalkyl and heteroaryl. Examples of heterocycles include, but are not limited to, morpholine, pyrrolidine, tetrahydrothiophene, piperidine, piperazine, oxetane, pyran, tetrahydropyran, azetidine, and tetrahydrofuran.


Examples of heterocyclic groups include, but are not limited to, acridinyl, azocinyl, benzimidazolyl, benzofuranyl, benzothiofuranyl, benzothiophenyl, benzoxazolyl, benzoxazolinyl, benzthiazolyl, benztriazolyl, benztetrazolyl, benzisoxazolyl, benzisothiazolyl, benzimidazolinyl, carbazolyl, 4aH-carbazolyl, carbolinyl, chromanyl, chromenyl, cinnolinyl, decahydroquinolinyl, 2H,6H-1,5,2-dithiazinyl, dihydrofuro[2,3-b]tetrahydrofuran, furanyl, furazanyl, imidazolidinyl, imidazolinyl, imidazolyl, 1H-indazolyl, indolenyl, indolinyl, indolizinyl, indolyl, 3H-indolyl, isatinoyl, isobenzofuranyl, isochromanyl, isoindazolyl, isoindolinyl, isoindolyl, isoquinolinyl, isothiazolyl, isoxazolyl, methylenedioxyphenyl (e.g., benzo[d][1,3]dioxole-5-yl), morpholinyl, naphthyridinyl, octahydroisoquinolinyl, oxadiazolyl, 1,2,3-oxadiazolyl, 1,2,4-oxadiazolyl, 1,2,5-oxadiazolyl, 1,3,4-oxadiazolyl, 1,2,4-oxadiazol5(4H)-one, oxazolidinyl, oxazolyl, oxindolyl, pyrimidinyl, phenanthridinyl, phenanthrolinyl, phenazinyl, phenothiazinyl, phenoxathinyl, phenoxazinyl, phthalazinyl, piperazinyl, piperidinyl, piperidonyl, 4-piperidonyl, piperonyl, pteridinyl, purinyl, pyranyl, pyrazinyl, pyrazolidinyl, pyrazolinyl, pyrazolyl, pyridazinyl, pyridooxazole, pyridoimidazole, pyridothiazole, pyridinyl, pyridyl, pyrimidinyl, pyrrolidinyl, pyrrolinyl, 2H-pyrrolyl, pyrrolyl, quinazolinyl, quinolinyl, 4H-quinolizinyl, quinoxalinyl, quinuclidinyl, tetrahydrofuranyl, tetrahydroisoquinolinyl, tetrahydroquinolinyl, tetrazolyl, 6H-1,2,5-thiadiazinyl, 1,2,3-thiadiazolyl, 1,2,4-thiadiazolyl, 1,2,5-thiadiazolyl, 1,3,4-thiadiazolyl, thianthrenyl, thiazolyl, thienyl, thienothiazolyl, thienooxazolyl, thienoimidazolyl, thiophenyl, triazinyl, 1,2,3-triazolyl, 1,2,4-triazolyl, 1,2,5-triazolyl, 1,3,4-triazolyl and xanthenyl.


The term “substituted,” as used herein, means that any one or more hydrogen atoms on the designated atom is replaced with a selection from the indicated groups, provided that the designated atom's normal valency is not exceeded, and that the substitution results in a stable compound. When a substituent is oxo or keto (i.e., ═O), then 2 hydrogen atoms on the atom are replaced. Keto substituents are not present on aromatic moieties. Ring double bonds, as used herein, are double bonds that are formed between two adjacent ring atoms (e.g., C═C, C═N or N═N). “Stable compound” and “stable structure” are meant to indicate a compound that is sufficiently robust to survive isolation to a useful degree of purity from a reaction mixture, and formulation into an efficacious therapeutic agent.


When a bond to a substituent is shown to cross a bond connecting two atoms in a ring, then such substituent may be bonded to any atom in the ring. When a substituent is listed without indicating the atom via which such substituent is bonded to the rest of the compound of a given formula, then such substituent may be bonded via any atom in such formula. Combinations of substituents and/or variables are permissible, but only if such combinations result in stable compounds.


When any variable (e.g., R) occurs more than one time in any constituent or formula for a compound, its definition at each occurrence is independent of its definition at every other occurrence. Thus, for example, if a group is shown to be substituted with 0-2 R moieties, then the group may optionally be substituted with up to two R moieties and R at each occurrence is selected independently from the definition of R. Also, combinations of substituents and/or variables are permissible, but only if such combinations result in stable compounds.


The term “hydroxy” or “hydroxyl” includes groups with an —OH or —O.


As used herein, “halo” or “halogen” refers to fluoro, chloro, bromo and iodo. The term “perhalogenated” generally refers to a moiety wherein all hydrogen atoms are replaced by halogen atoms. The term “haloalkyl” or “haloalkoxyl” refers to an alkyl or alkoxyl substituted with one or more halogen atoms.


The term “carbonyl” includes compounds and moieties which contain a carbon connected with a double bond to an oxygen atom. Examples of moieties containing a carbonyl include, but are not limited to, aldehydes, ketones, carboxylic acids, amides, esters, anhydrides, etc.


The term “carboxyl” refers to —COOH or its C1-C6 alkyl ester.


“Acyl” includes moieties that contain the acyl radical (R—C(O)—) or a carbonyl group. “Substituted acyl” includes acyl groups where one or more of the hydrogen atoms are replaced by, for example, alkyl groups, alkynyl groups, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, phosphate, phosphonato, phosphinato, amino (including alkylamino, dialkylamino, arylamino, diarylamino and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moiety.


“Aroyl” includes moieties with an aryl or heteroaromatic moiety bound to a carbonyl group. Examples of aroyl groups include phenylcarboxy, naphthyl carboxy, etc.


“Alkoxyalkyl,” “alkylaminoalkyl,” and “thioalkoxyalkyl” include alkyl groups, as described above, wherein oxygen, nitrogen, or sulfur atoms replace one or more hydrocarbon backbone carbon atoms.


The term “alkoxy” or “alkoxyl” includes substituted and unsubstituted alkyl, alkenyl and alkynyl groups covalently linked to an oxygen atom. Examples of alkoxy groups or alkoxyl radicals include, but are not limited to, methoxy, ethoxy, isopropyloxy, propoxy, butoxy and pentoxy groups. Examples of substituted alkoxy groups include halogenated alkoxy groups. The alkoxy groups can be substituted with groups such as alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, phosphate, phosphonato, phosphinato, amino (including alkylamino, dialkylamino, arylamino, diarylamino, and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moieties. Examples of halogen substituted alkoxy groups include, but are not limited to, fluoromethoxy, difluoromethoxy, trifluoromethoxy, chloromethoxy, dichloromethoxy and trichloromethoxy.


The term “ether” or “alkoxy” includes compounds or moieties which contain an oxygen bonded to two carbon atoms or heteroatoms. For example, the term includes “alkoxyalkyl,” which refers to an alkyl, alkenyl, or alkynyl group covalently bonded to an oxygen atom which is covalently bonded to an alkyl group.


The term “ester” includes compounds or moieties which contain a carbon or a heteroatom bound to an oxygen atom which is bonded to the carbon of a carbonyl group. The term “ester” includes alkoxycarboxy groups such as methoxycarbonyl, ethoxycarbonyl, propoxycarbonyl, butoxycarbonyl, pentoxycarbonyl, etc.


The term “thioalkyl” includes compounds or moieties which contain an alkyl group connected with a sulfur atom. The thioalkyl groups can be substituted with groups such as alkyl, alkenyl, alkynyl, halogen, hydroxyl, alkylcarbonyloxy, arylcarbonyloxy, alkoxycarbonyloxy, aryloxycarbonyloxy, carboxylate, carboxyacid, alkylcarbonyl, arylcarbonyl, alkoxycarbonyl, aminocarbonyl, alkylaminocarbonyl, dialkylaminocarbonyl, alkylthiocarbonyl, alkoxyl, amino (including alkylamino, dialkylamino, arylamino, diarylamino and alkylarylamino), acylamino (including alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido), amidino, imino, sulfhydryl, alkylthio, arylthio, thiocarboxylate, sulfates, alkylsulfinyl, sulfonato, sulfamoyl, sulfonamido, nitro, trifluoromethyl, cyano, azido, heterocyclyl, alkylaryl, or an aromatic or heteroaromatic moieties.


The term “thiocarbonyl” or “thiocarboxy” includes compounds and moieties which contain a carbon connected with a double bond to a sulfur atom.


The term “thioether” includes moieties which contain a sulfur atom bonded to two carbon atoms or heteroatoms. Examples of thioethers include, but are not limited to alkthioalkyls, alkthioalkenyls, and alkthioalkynyls. The term “alkthioalkyls” include moieties with an alkyl, alkenyl, or alkynyl group bonded to a sulfur atom which is bonded to an alkyl group. Similarly, the term “alkthioalkenyls” refers to moieties wherein an alkyl, alkenyl or alkynyl group is bonded to a sulfur atom which is covalently bonded to an alkenyl group; and alkthioalkynyls” refers to moieties wherein an alkyl, alkenyl or alkynyl group is bonded to a sulfur atom which is covalently bonded to an alkynyl group.


As used herein, “amine” or “amino” refers to —NH2. “Alkylamino” includes groups of compounds wherein the nitrogen of —NH2 is bound to at least one alkyl group. Examples of alkylamino groups include benzylamino, methylamino, ethylamino, phenethylamino, etc. “Dialkylamino” includes groups wherein the nitrogen of —NH2 is bound to two alkyl groups. Examples of dialkylamino groups include, but are not limited to, dimethylamino and diethylamino. “Arylamino” and “diarylamino” include groups wherein the nitrogen is bound to at least one or two aryl groups, respectively. “Aminoaryl” and “aminoaryloxy” refer to aryl and aryloxy substituted with amino. “Alkylarylamino,” “alkylaminoaryl” or “arylaminoalkyl” refers to an amino group which is bound to at least one alkyl group and at least one aryl group. “Alkaminoalkyl” refers to an alkyl, alkenyl, or alkynyl group bound to a nitrogen atom which is also bound to an alkyl group. “Acylamino” includes groups wherein nitrogen is bound to an acyl group. Examples of acylamino include, but are not limited to, alkylcarbonylamino, arylcarbonylamino, carbamoyl and ureido groups.


The term “amide” or “aminocarboxy” includes compounds or moieties that contain a nitrogen atom that is bound to the carbon of a carbonyl or a thiocarbonyl group. The term includes “alkaminocarboxy” groups that include alkyl, alkenyl or alkynyl groups bound to an amino group which is bound to the carbon of a carbonyl or thiocarbonyl group. It also includes “arylaminocarboxy” groups that include aryl or heteroaryl moieties bound to an amino group that is bound to the carbon of a carbonyl or thiocarbonyl group. The terms “alkylaminocarboxy”, “alkenylaminocarboxy”, “alkynylaminocarboxy” and “arylaminocarboxy” include moieties wherein alkyl, alkenyl, alkynyl and aryl moieties, respectively, are bound to a nitrogen atom which is in turn bound to the carbon of a carbonyl group. Amides can be substituted with substituents such as straight chain alkyl, branched alkyl, cycloalkyl, aryl, heteroaryl or heterocycle. Substituents on amide groups may be further substituted.


Compounds of the present disclosure that contain nitrogens can be converted to N-oxides by treatment with an oxidizing agent (e.g., 3-chloroperoxybenzoic acid (mCPBA) and/or hydrogen peroxides) to afford other compounds of the present disclosure. Thus, all shown and claimed nitrogen-containing compounds are considered, when allowed by valency and structure, to include both the compound as shown and its N-oxide derivative (which can be designated as N→O or N+—O). Furthermore, in other instances, the nitrogens in the compounds of the present disclosure can be converted to N-hydroxy or N-alkoxy compounds. For example, N-hydroxy compounds can be prepared by oxidation of the parent amine by an oxidizing agent such as m-CPBA. All shown and claimed nitrogen-containing compounds are also considered, when allowed by valency and structure, to cover both the compound as shown and its N-hydroxy (i.e., N—OH) and N-alkoxy (i.e., N—OR, wherein R is substituted or unsubstituted C1-C6 alkyl, C1-C6 alkenyl, C1-C6 alkynyl, 3-14-membered carbocycle or 3-14-membered heterocycle) derivatives.


In the present specification, the structural formula of the compound represents a certain isomer for convenience in some cases, but the present disclosure includes all isomers, such as geometrical isomers, optical isomers based on an asymmetrical carbon, stereoisomers, tautomers, and the like, it being understood that not all isomers may have the same level of activity. In addition, a crystal polymorphism may be present for the compounds represented by the formula. It is noted that any crystal form, crystal form mixture, or anhydride or hydrate thereof is included in the scope of the present disclosure.


“Isomerism” means compounds that have identical molecular formulae but differ in the sequence of bonding of their atoms or in the arrangement of their atoms in space. Isomers that differ in the arrangement of their atoms in space are termed “stereoisomers.” Stereoisomers that are not mirror images of one another are termed “diastereoisomers,” and stereoisomers that are non-superimposable mirror images of each other are termed “enantiomers” or sometimes optical isomers. A mixture containing equal amounts of individual enantiomeric forms of opposite chirality is termed a “racemic mixture.”


A carbon atom bonded to four nonidentical substituents is termed a “chiral center.”


“Chiral isomer” means a compound with at least one chiral center. Compounds with more than one chiral center may exist either as an individual diastereomer or as a mixture of diastereomers, termed “diastereomeric mixture.” When one chiral center is present, a stereoisomer may be characterized by the absolute configuration (R or S) of that chiral center. Absolute configuration refers to the arrangement in space of the substituents attached to the chiral center. The substituents attached to the chiral center under consideration are ranked in accordance with the Sequence Rule of Cahn, Ingold and Prelog. (Cahn et al., Angew. Chem. Inter. Edit. 1966, 5, 385; errata 511; Cahn et al., Angew. Chem. 1966, 78, 413; Cahn and Ingold, J. Chem. Soc. 1951 (London), 612; Cahn et al., Experientia 1956, 12, 81; Cahn, J. Chem. Educ. 1964, 41, 116).


“Geometric isomer” means the diastereomers that owe their existence to hindered rotation about double bonds or a cycloalkyl linker (e.g., 1,3-cylcobutyl). These configurations are differentiated in their names by the prefixes cis and trans, or Z and E, which indicate that the groups are on the same or opposite side of the double bond in the molecule according to the Cahn-Ingold-Prelog rules.


It is to be understood that the compounds of the present disclosure may be depicted as different chiral isomers or geometric isomers. It should also be understood that when compounds have chiral isomeric or geometric isomeric forms, all isomeric forms are intended to be included in the scope of the present disclosure, and the naming of the compounds does not exclude any isomeric forms, it being understood that not all isomers may have the same level of activity.


Furthermore, the structures and other compounds discussed in this disclosure include all atropic isomers thereof, it being understood that not all atropic isomers may have the same level of activity. “Atropic isomers” are a type of stereoisomer in which the atoms of two isomers are arranged differently in space. Atropic isomers owe their existence to a restricted rotation caused by hindrance of rotation of large groups about a central bond. Such atropic isomers typically exist as a mixture, however as a result of recent advances in chromatography techniques, it has been possible to separate mixtures of two atropic isomers in select cases.


“Tautomer” is one of two or more structural isomers that exist in equilibrium and is readily converted from one isomeric form to another. This conversion results in the formal migration of a hydrogen atom accompanied by a switch of adjacent conjugated double bonds. Tautomers exist as a mixture of a tautomeric set in solution. In solutions where tautomerization is possible, a chemical equilibrium of the tautomers will be reached. The exact ratio of the tautomers depends on several factors, including temperature, solvent and pH. The concept of tautomers that are interconvertible by tautomerizations is called tautomerism.


Of the various types of tautomerism that are possible, two are commonly observed. In keto-enol tautomerism a simultaneous shift of electrons and a hydrogen atom occurs. Ring-chain tautomerism arises as a result of the aldehyde group (—CHO) in a sugar chain molecule reacting with one of the hydroxy groups (—OH) in the same molecule to give it a cyclic (ring-shaped) form as exhibited by glucose.


Common tautomeric pairs are: ketone-enol, amide-nitrile, lactam-lactim, amide-imidic acid tautomerism in heterocyclic rings (e.g., in nucleobases such as guanine, thymine and cytosine), imine-enamine and enamine-enamine. Examples of lactam-lactim tautomerism are as shown below.




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It is to be understood that the compounds of the present disclosure may be depicted as different tautomers. It should also be understood that when compounds have tautomeric forms, all tautomeric forms are intended to be included in the scope of the present disclosure, and the naming of the compounds does not exclude any tautomer form. It will be understood that certain tautomers may have a higher level of activity than others.


The term “crystal polymorphs”, “polymorphs” or “crystal forms” means crystal structures in which a compound (or a salt or solvate thereof) can crystallize in different crystal packing arrangements, all of which have the same elemental composition. Different crystal forms usually have different X-ray diffraction patterns, infrared spectral, melting points, density hardness, crystal shape, optical and electrical properties, stability and solubility. Recrystallization solvent, rate of crystallization, storage temperature, and other factors may cause one crystal form to dominate. Crystal polymorphs of the compounds can be prepared by crystallization under different conditions.


The compounds of any Formula described herein include the compounds themselves, as well as their salts, and their solvates, if applicable. A salt, for example, can be formed between an anion and a positively charged group (e.g., amino) on a substituted benzene compound. Suitable anions include chloride, bromide, iodide, sulfate, bisulfate, sulfamate, nitrate, phosphate, citrate, methanesulfonate, trifluoroacetate, glutamate, glucuronate, glutarate, malate, maleate, succinate, fumarate, tartrate, tosylate, salicylate, lactate, naphthalenesulfonate, and acetate (e.g., trifluoroacetate). The term “pharmaceutically acceptable anion” refers to an anion suitable for forming a pharmaceutically acceptable salt. Likewise, a salt can also be formed between a cation and a negatively charged group (e.g., carboxylate) on a substituted benzene compound. Suitable cations include sodium ion, potassium ion, magnesium ion, calcium ion, and an ammonium cation such as tetramethylammonium ion. The substituted benzene compounds also include those salts containing quaternary nitrogen atoms.


Additionally, the compounds of the present disclosure, for example, the salts of the compounds, can exist in either hydrated or unhydrated (the anhydrous) form or as solvates with other solvent molecules. Nonlimiting examples of hydrates include monohydrates, dihydrates, etc. Nonlimiting examples of solvates include ethanol solvates, acetone solvates, etc.


“Solvate” means solvent addition forms that contain either stoichiometric or non-stoichiometric amounts of solvent. Some compounds have a tendency to trap a fixed molar ratio of solvent molecules in the crystalline solid state, thus forming a solvate. If the solvent is water the solvate formed is a hydrate; and if the solvent is alcohol, the solvate formed is an alcoholate. Hydrates are formed by the combination of one or more molecules of water with one molecule of the substance in which the water retains its molecular state as H2O.


As used herein, the term “analog” refers to a chemical compound that is structurally similar to another but differs slightly in composition (as in the replacement of one atom by an atom of a different element or in the presence of a particular functional group, or the replacement of one functional group by another functional group). Thus, an analog is a compound that is similar or comparable in function and appearance, but not in structure or origin to the reference compound.


As defined herein, the term “derivative” refers to compounds that have a common core structure, and are substituted with various groups as described herein. For example, all of the compounds represented by Formula (II) are substituted bi-heterocyclic compounds, and have Formula (II) as a common core.


The term “bioisostere” refers to a compound resulting from the exchange of an atom or of a group of atoms with another, broadly similar, atom or group of atoms. The objective of a bioisosteric replacement is to create a new compound with similar biological properties to the parent compound. The bioisosteric replacement may be physicochemically or topologically based. Examples of carboxylic acid bioisosteres include, but are not limited to, acyl sulfonimides, tetrazoles, sulfonates and phosphonates. See, e.g., Patani and LaVoie, Chem. Rev. 96, 3147-3176, 1996.


The present disclosure is intended to include all isotopes of atoms occurring in the present compounds. Isotopes include those atoms having the same atomic number but different mass numbers. By way of general example and without limitation, isotopes of hydrogen include tritium and deuterium, and isotopes of carbon include C-13 and C-14.


As used herein, the expressions “one or more of A, B, or C,” “one or more A, B, or C,” “one or more of A, B, and C,” “one or more A, B, and C,” “selected from the group consisting of A, B, and C”, “selected from A, B, and C”, and the like are used interchangeably and all refer to a selection from a group consisting of A, B, and/or C, i.e., one or more As, one or more Bs, one or more Cs, or any combination thereof, unless indicated otherwise.


The present disclosure provides methods for the synthesis of the compounds of any of the Formulae described herein. The present disclosure also provides detailed methods for the synthesis of various disclosed compounds of the present disclosure according to the following schemes as well as those shown in the Examples.


Throughout the description, where compositions are described as having, including, or comprising specific components, it is contemplated that compositions also consist essentially of, or consist of, the recited components. Similarly, where methods or processes are described as having, including, or comprising specific process steps, the processes also consist essentially of, or consist of, the recited processing steps. Further, it should be understood that the order of steps or order for performing certain actions is immaterial so long as the respective method or process remains operable. Moreover, two or more steps or actions can be conducted simultaneously. In some embodiments, the one or more additional therapeutic agent is a therapeutic agent for the treatment of rheumatoid arthritis selected form the group comprising Actemra® (tocilizumab; immunosuppressant), Arava® (leflunomide; immunosuppressant), Azulfidine® (sulfasalazine; anti-inflammatory), Valdecoxib® (bextra; anti-inflammatory), Cimzia® (certolizumab pegol; anti-inflammatory), Duexis® (ibuprofen; nonsteroidal anti-inflammatory drug, and famotidine; antacid and antihistamine), Etodolac® (lodine; nonsteroidal anti-inflammatory drug), Humira® (adalimumab; immunosupressant), Kevzara® (sarilumab; monoclonal antibody), Kineret® (anakinra; immunosuperssant), Lodine® (etodolac; nonsteroidal anti-inflammatory drug), Naprelan® (naproxen sodium; nonsteroidal anti-inflammatory drug), Orencia® (abatacept; modified antibody), Rayos® (prednisone; steroid) delayed-release tablets, Remicade® (infliximab; chimeric monoclonal antibody), Simponi® (golimumab; immunosupressabt), Vioxx® (rofecoxib; nonsteroidal anti-inflammatory drug), Xeljanz® (Tofacitinib; JAK inhibitor), Ilaris® (canakinumab; anti-inflammatory), Asacol HD®/Delzicol® (mesalamine), Colazal® (balsalazide), Dipentum® (olsalazine), Deltasone® (prednisone), Entocort® (budesonide), Gengraf®, Neoral®, Sandimmune® (cyclosporine), Trexall® (methotraxate), Remicade® (Infliximib), Humira® (Adalimumab), Uceris® (Budesonide-MMX®), Azasan®, Imuran® (Azathioprine), Purinethol®/Purixan® (Mercaptopurine), Simponi® (Golimumab), Tysabri® (Natalizumab), Entyvio® (Vedolizumab), and Stelara® (Ustekinumab).


In some embodiments, the one or more additional therapeutic agent is a therapeutic agent for the treatment of multiple sclerosis selected form the group comprising Ampyra® (dalfampridine; potassium channel blocker), Arvara® (leflunomide; immunosuppressant) Aubagio® (teriflunomide; acive metabolite of leflunomide), Avonex®; Rebif® (Interferon beta 1-b; anti-inflammatory), Copaxone® (glatiramer acetate; immunomodulator drug), Extavia® (Interferon beta-1 b; immunosuppressant), Gilenya® (fingolimod; immunosuppressant), Lemtrada® (alemtuzumab; monochlonal antibody), Novantrone® (mitoxantrone hydrochloride; chemotherapy), Ocrevus™ (ocrelizumab; monochlonal antibody), Plegridy® (pegylated interferon beta-1a; anti-inflammatory), Tecfidera® (dimethyl fumarate; immunomodulatory drug), Tysabri® (natalizumab; immunosuppressant), Zinbryta® (daclizumab; monoclonal antibody), Asacol HD®/Delzicol® (mesalamine), Colazal® (balsalazide), Dipentum® (olsalazine), Deltasone® (prednisone), Entocort® (budesonide), Gengraf®, Neoral®, Sandimmune® (cyclosporine), Trexall® (methotraxate), Remicade® (Infliximib), Humira® (Adalimumab), Uceris® (Budesonide-MMX®), Azasan®, Imuran® (Azathioprine), Purinethol®/Purixan® (Mercaptopurine), Simponi® (Golimumab), Tysabri® (Natalizumab), Entyvio® (Vedolizumab), and Stelara® (Ustekinumab).


In some embodiments, the one or more additional therapeutic agent is a therapeutic agent for the treatment of psoriasis, a psoriatic disorders, or psoriatic arthritis selected from the group comprising Amevive® (alefacept; immunosupressant), Cosentyx® (secukinumab; human IgG1 monoclonal antibody), Dovonex®/Sorilux®/Calcitrene® (calcipotriene; Vitamin), Diprolene® (betamethasone dipropionate; glucocorticoid steroid), Enstilar® (calcipotriene and betamethasone dipropionate), Otezla® (apremilast; inhibitor of phosphodiesterase 4), Rayos® (prednisone delayed-release tablets; corticosteroid), Siliq® (brodalumab; human interleukin-17 receptor A (IL-17RA) antagonist), Stelara® (ustekinumab, human IgG1k monoclonal antibody), Taltz® (ixekizumab, humanized interleukin-17A antagonist), Tazorac® topical gel (tazarotene), Tremfya® (guselkumab, interleukin-23 blocker), Enbrel® (etanercept; TNF inhibitor), Asacol HD®/Delzicol® (mesalamine), Colazal® (balsalazide), Dipentum® (olsalazine), Deltasone® (prednisone), Entocort® (budesonide), Gengraf®, Neoral®, Sandimmune® (cyclosporine), Trexall® (methotraxate), Remicade® (Infliximib), Humira® (Adalimumab), Uceris® (Budesonide-MMX®), Azasan®, Imuran® (Azathioprine), Purinethol®/Purixan® (Mercaptopurine), Simponi® (Golimumab), Tysabri® (Natalizumab), Entyvio® (Vedolizumab), and Stelara® (Ustekinumab).


In some embodiments, the one or more additional therapeutic agent is a therapeutic agent for the treatment of inflammatory bowel syndrome, such as Linzess® (linaclotide; agonist of guanylate cyclase 2C), Asacol HD®/Delzicol® (mesalamine), Colazal® (balsalazide), Dipentum® (olsalazine), Deltasone® (prednisone), Entocort® (budesonide), Gengraf®, Neoral®, Sandimmune® (cyclosporine), Trexall® (methotraxate), Remicade® (Infliximib), Humira® (Adalimumab), Uceris® (Budesonide-MMX®), Azasan®, Imuran® (Azathioprine), Purinethol®/Purixan® (Mercaptopurine), Simponi® (Golimumab), Tysabri® (Natalizumab), Entyvio® (Vedolizumab), and Stelara® (Ustekinumab).


Second therapeutic agents of the disclosure are further described in Tables 8-16.









TABLE 8







Anti-Inflammatory Agents - Nonsteroidal Anti-Inflammatory Drugs









Generic Name
Trade Name
IUPAC Name





valdecoxib
Bextra ®
4-(5-methyl-3-phenylisoxazol-4-yl)benzenesulfonamide; 4-(5-




Methyl-3-phenyl-4-isoxazolyl)benzenesulfonamide


ibuprofen

2-(4-isobutylphenyl)propanoic acid


lodine
Etodolac ®
2-(1,8-diethyl-4,9-dihydro-3H-pyrano[3,4-b]indol-1-yl)acetic




acid


naproxen
Naprelan ®
sodium 2-(6-methoxy-2-naphthyl)propanoate


sodium


rofecoxib
Vioxx ®
4-[4-(methylsulfonyl)phenyl]-3-phenyl-2(5H)-furanone


mesalamine
Asacol ® HD
5-amino-2-hydroxybenzoic acid



Delzicol ®


aspirin
Aspirin ®
2-acetoxybenzoic acid


diflunisal
Dolobid ®
2′,4′-Difluoro-4-hydroxy-3-biphenylcarboxylic acid


salsalate
Disalcid ®
2-((2-hydroxybenzoyl)oxy)benzoic acid


diclofenac
Cataflam ®
2-(2-((2,6-dichlorophenyl)amino)phenyl)acetic acid



Voltaren ®


meloxicam
Mobic ®
4-hydroxy-2-methyl-N-(5-methylthiazol-2-yl)-2H-



Vivlodex ®
benzo[e][1,2]thiazine-3-carboxamide 1,1-dioxide
















TABLE 9







Anti-Inflammatory Agents - Aminosalicylates









Generic Name
Trade Name
IUPAC Name





mesalamine
Asacol ® HD
5-amino-2-hydroxybenzoic acid



Delzicol ®


balsalazide
Colazal ®
5-[(E)-{4-[(2-carboxyethyl)carbamoyl]phenyl}diazenyl]-2-




hydroxybenzoic acid


olsalazine
Dipentum ®
5-[(2Z)-2-(3-carboxy-4-oxocyclohexa-2,5-dien-1-




ylidene)hydrazinyl]-2-hydroxybenzoic acid


aspirin
Aspirin ®
2-acetoxybenzoic acid


diflunisal
Dolobid ®
2′,4′-Difluoro-4-hydroxy-3-biphenylcarboxylic acid


salsalate
Disalcid ®
2-((2-hydroxybenzoyl)oxy)benzoic acid
















TABLE 10







Anti-Inflammatory Agents - Corticosteroids









Generic Name
Trade Name
IUPAC Name





betamethasone
Diprolene ®
(8S,9R,10S,11S,13S,14S,16S,17R)-9-fluoro-11,17-


dipropionate

dihydroxy-17-(2-hydroxyacetyl)-10,13,16-trimethyl-




6,7,8,11,12,14,15,16-octahydrocyclopenta[a]phenanthren-




3-one


prednisone
Rayos ®
(8S,9S,10R,13S,14S,17R)-17-hydroxy-17-



(delayed-
(hydroxyacetyl)-10,13-dimethyl-



release tablets)
7,8,9,10,12,13,14,15,16,17-decahydro-3H-



Deltasone ®
cyclopenta[a]phenanthrene-3,11(6H)-dione


prednisolone
Omnipred ®
(8S,9S,10R,13S,14S,17R)-11,17-dihydroxy-17-(2-



Pediapred ®
hydroxyacetyl)-10,13-dimethyl-



Pred Mild ®
6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-




cyclopenta[a]phenanthren-3-one


methylprednisolone
Medrol ®,
(6S,8S,9S,10R,13S,14S,17R)-11,17-dihydroxy-17-(2-



Solu-Medrol ®
hydroxyacetyl)-6,10,13-trimethyl-



Depo-Medrol ®
6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-




cyclopenta[a]phenanthren-3-one


budesonide
Entocort ®
(6aR,6bS,7S,8aS,8bS,11aR,12aS,12bS)-7-hydroxy-8b-(2-



Budesonide
hydroxyacetyl)-6a,8a-dimethyl-10-propyl-



MMX ®
1,2,6a,6b,7,8,8a,8b,11a,12,12a,12b-dodecahydro-4H-



Uceris ®
naphtho[2′,1′:4,5]indeno[1,2-d][1,3]dioxol-4-one


triamcinolone
Aristocort ®
(8S,9R,10S,11S,13S,14S,16R,17S)-9-fluoro-11,16,17-



Kenacort ®
trihydroxy-17-(2-hydroxyacetyl)-10,13-dimethyl-



Triaderm ®
6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-




cyclopenta[a]phenanthren-3-one


Triamcinolone
Kenalog  ®
9α-Fluoro-11β,21-dihydroxy-16α,17α-


acetonide
(topical)
isopropylidenedioxypregna-1,4-diene,3,20-dione



Volon A ®



(injection)



Nasacort ®



(nasal)


cortisone
Ala-Cort  ®
dimethyl-1,2,6,7,8,9,12,14,15,16-



Cortone ®
decahydrocyclopenta[a]phenanthrene-3,11-dione


dexamethasone
Ozurdex ®
(8S,9R,10S,11S,13S,14S,16R,17R)-9-fluoro-11,17-




dihydroxy-17-(2-hydroxyacetyl)-10,13,16-trimethyl-




6,7,8,9,10,11,12,13,14,15,16,17-dodecahydro-3H-




cyclopenta[a]phenanthren-3-one


cyclophosphamide
Endoxan ®
2-(bis(2-chloroethyl)amino)-1,3,2-oxazaphosphinane 2-



Cytoxan ®
oxide



Revimmune ®


vincristine
Marqibo ®
methyl (3aR,3a1R,4R,5S,5aR,10bR)-4-acetoxy-3a-ethyl-



Vincasar ®
9-((5S,7S,9S)-5-ethyl-5-hydroxy-9-(methoxycarbonyl)-



Oncovin ®
1,4,5,6,7,8,9,10-octahydro-2H-3,7-




methano[1]azacycloundecino[5,4-b]indol-9-yl)-6-formyl-




5-hydroxy-8-methoxy-3a,3a1,4,5,5a,6,11,12-octahydro-




1H-indolizino[8,1-cd]carbazole-5-carboxylate


doxorubicin
Adriamycin ®
(8S,10S)-10-(((2R,4S,5R,6S)-4-amino-5-hydroxy-6-



Doxil ®
methyltetrahydro-2H-pyran-2-yl)oxy)-6,8,11-trihydroxy-




8-(2-hydroxyacetyl)-1-methoxy-7,8,9,10-




tetrahydrotetracene-5,12-dione


mafosfamide

2-{(2-[bis(2-chloroethyl)amino]-2-oxido-1,3,2-




oxazaphosphinan-4-yl}thio)ethanesulfonic acid


cisplatin

cis-diamminedichloridoplatinum(II)


Cytarabine (AraC)
Cytosar-U ®
4-amino-1-((2R,3S,4S,5R)-3,4-dihydroxy-5-



Depocyt ®
(hydroxymethyl)tetrahydrofuran-2-yl)pyrimidin-2(1H)-




one


everolimus
Zortress ®
42-O-(2-hydroxyethyl)rapamycin



Afinitor ®


decitabine
Dacogen ®
5-aza-2′-deoxycytidine
















TABLE 11





Anti-Inflammatory Agents - Others

















acetaminophen




sulfasalazine
Azulfidine ®
2-hydroxy-5-{[4-(2-




pyridinylsulfamoyl)phenyl]diazenyl}benzoic acid


certolizumab
Cimzia ®
monoclonal antibody


pegol


interferon beta 1-b
Avonex ®;
cytokine



Rebif ®;



Extavia ®


pegylated
Plegridy ®
cytokine


interferon beta-1a


canakinumab
Ilaris ®
monoclonal antibody
















TABLE 12







Immuno-modulatory drugs










Generic Name
Trade Name
IUPAC Name
Mechanism of action





fingolimod
Gilenya ®
2-amino-2-[2-(4-
immunosuppressant




octylphenyl)ethyl]propane-1,3-diol


azathioprine
Azasan ®
6-[(1-methyl-4-nitro-1H-imidazol-5-
immunosuppressant



Imuran ®
yl)sulfanyl]-1H-purine


mercaptopurine
Purinethol ®
1,7-dihydro-6H-purine-6-thione
immunosuppressant



Purixan ®


cyclosporine
Gengraf ®
(3S,6S,9S,12R,15S,18S,21S,24S,30S,33
immunosuppressant



Neoral ®
S)-30-Ethyl-33-[(1R,2R,4E)-1-hydroxy-



Sandimmune ®
2-methyl-4-hexen-1-yl]-6,9,18,24-




tetraisobutyl-3,21-diisopropyl-




1,4,7,10,12,15,19,25,28-nonamethyl-




1,4,7,10,13,16,19,22,25,28,3 1-




undecaazacyclotritriacontane-




2,5,8,11,14,17,20,23,26,29,32-undecone


methotrexate
Trexall ®
N-(4-([(2,4-Diamino-6-
immunosuppressant




pteridinyl)methyl](methyl)amino}benzo




yl)-L-glutamic acid


alefacept
Amevive ®
dimeric fusion protein
Immunosuppressant


tocilizumab
Actemra ®
monoclonal antibody
Immunosuppressant


golimumab
Simponi ®
monoclonal antibody
TNFa inhibitor


interferon beta
Avonex ®;
cytokine (protein)
anti-inflammatory;


1-b
Rebif ®;

immunosuppressant



Extavia ®


glatiramer
Copaxone ®
mixture of random-sized peptides
immunomodulator


acetate


natalizumab
Tysabri ®
monochlonal antibody
immunosuppressant


pomalidomide
Pomalyst ®
4-amino-2-(2,6-dioxopiperidin-3-
immunomodulator




yl)isoindoline-1,3-dione


lenalidomide
Revlimid ®
3-(4-amino-1-oxoisoindolin-2-
immunomodulator




yl)piperidine-2,6-dione


thalidomide
Thalomid ®
2-(2,6-dioxopiperidin-3-yl)isoindoline-
immunomodulator



Immunoprin ®
1,3-dione


apremilast
Otezla ®
(S)-N-(2-(1-(3-ethoxy-4-
phosphodiesterase 4




methoxyphenyl)-2-
(PDE4) inhibitor




(methylsulfonyl)ethyl)-1,3-




dioxoisoindolin-4-yl)acetamide
















TABLE 13







Biologics










Generic Name
Trade Name
Type
Mechanism of action





alefacept
Amevive ®
dimeric fusion protein
immunosuppressant


tocilizumab
Actemra ®
monoclonal antibody
immunosuppressant


golimumab
Simponi ®
monoclonal antibody
immunosuppressant;





TNFa inhibitor


certolizumab
Cimzia ®
monoclonal antibody
anti-inflammatory


pegol


interferon beta 1-b
Avonex ®;
cytokine
anti-inflammatory;



Rebif ®;

immunosuppressant



Extavia ®


glatiramer acetate
Copaxone ®
mixture of random-sized peptides
immunomodulator


anakinra
Kineret ®
recombinant protein
interleukin 1 (IL1)





receptor antagonist


ocrelizumab
Ocrevus ™
monochlonal antibody
binds to CD20


pegylated
Plegridy ®
cytokine
anti-inflammatory


interferon beta-1a


natalizumab
Tysabri ®
monochlonal antibody
immunosuppressant


daclizumab
Zinbryta ®
monoclonal antibody
binds to CD25


secukinumab
Cosentyx ®
human IgG1 monoclonal antibody
interleukin-17A (IL-





17A) inhibitor


infliximab
Remicade ®
monoclonal antibody
TNFa inhibitor


vedolizumab
Entyvio
monoclonal antibody
anti α4β7 integrin





antibody


brodalumab
Siliq ®
monoclonal antibody
human interleukin-17





receptor A (IL-17RA)





antagonist


ustekinumab
Stelara ®
monoclonal antibody
interleukin 12 (IL-12)





and interleukin 23 (IL-





23) antagonist


ixekizumab
Taltz ®
monoclonal antibody
human interleukin-17A





antagonist


guselkumab
Tremfya ®
monoclonal antibody
targets the IL-23 subunit





alpha; blocks interleukin-





23 but not IL-12


etanercept
Enbrel ®
fusion protein
TNF inhibitor


linaclotide
Linzess ®
oligo-peptide
guanylate cyclase 2C





agonist


adalimumab
Humira ®
monoclonal antibody
TNFa inhibitor


sarilumab
Kevzara ®
monoclonal antibody
interleukin-6 receptor





agonist


abatacept
Orencia ®
soluble fusion protein
modified antibody


canakinumab
Ilaris ®
monoclonal antibody
anti-inflammatory


alemtuzumab
Lemtrada ®
monochlonal antibody
binds to CD52
















TABLE 14







Other second agents












Generic Name
Trade Name
Type
Mechanism of action















kinase
tofacitinib
Xeljanz ®
3-{(3R,4R)-4-methyl-3-
inhibits (Janus


inhibitor


[methyl(7H-pyrrolo[2,3-
kinase (JAK)





d]pyrimidin-4-





yl)amino]piperidin-1-yl}-3-





oxopropanenitrile


potassium
dalfampridine
Ampyra ®
4-aminopyridine
potassium


channel



channel blocker


blocker


nicotinic acid
dimethyl
Tecfidera ®
dimethyl (E)-but-2-enedioate
activates


receptor
fumarate


erythroid-derived


agonist



2-like 2 (Nrf2)






pathway


antacid and
famotidine
Pepcid ®
3-(((2-
histamine H2


antihistamine


((aminoiminomethyl)amino)-
receptor





4-thiazolyl)methyl)thio)-N-
antagonist





(aminosulfonyl)propanimidamide


antineoplastic
mitoxantrone
Novantrone ®
1,4-dihydroxy-5,8-bis({2-[(2-
topoisomerase


agent
hydrochloride

hydroxyethyl)amino]ethyl}amino)-
inhibitor





9,10-anthraquinone





dihydrochloride


synthetic
calcipotriene
Dovonex ®
1,4-dihydroxy-5,8-bis[2-(2-


vitamin D3

Sorilux ®
hydroxyethylamino)ethylami-


derivative

Calcitrene ®
no]anthracene-9,10-





dione; dihydrochloride


retinoid
tazarotene
Tazorac ®
ethyl 6-[(4,4-dimethyl-3,4-
binds at retinoid




(topical gel)
dihydro-2H-thiochromen-6-
acid receptors





yl)ethynyl]nicotinate
RARβ and RARγ
















TABLE 15







Disease-Modifying Antirheumatic Drugs










Generic Name
Trade Name
Type/IUPAC Name
Mechanism of Action





leflunomide
Arava ®
5-methyl-N-(4-
immunosuppressant




(trifluoromethyl)phenyl)isoxazole-




4-carboxamide


teriflunomide
Aubagio ®
(2Z)-2-cyano-3-hydroxy-N-[4-
active metabolite of




(trifluorotnethyl)phenyl]-2-
leflunomide




butenamide


sulfasalazine
Azulfidine ®
2-hydroxy-5-{[4-(2-
anti-inflammatory;




pyridinylsulfamoyl)phe-
immunosuppressant




nyl]diazenyl}benzoic acid


azathioprine
Azasan ®
6-[(1-methyl-4-nitro-1H-
immunosuppressant



Imuran ®
imidazol-5-yl)sulfanyl]-1H-




purine


methotrexate
Trexall ®
N-(4-{[(2,4-Diamino-6-
immunosuppressant




pteridinyl)methyl](methyl)amino}benzoyl)-




L-glutamic acid


anakinra
Kineret ®
recombinant protein
interleukin 1 (IL1) receptor





antagonist


etanercept
Enbrel ®
fusion protein
TNF inhibitor


tocilizumab
Actemra ®
monoclonal antibody
Immunosuppressant;


adalimumab
Humira ®
whole antibody
TNFa inhibitor


abatacept
Orencia ®
soluble fusion protein


infliximab
Remicade ®
monoclonal antibody


golimumab
Simponi ®
monoclonal antibody
immunosuppressant


tofacitinib
Xeljanz ®
3-{(3R,4R)-4-methyl-3-
Janus kinase (JAK)




[methyl(7H-pyrrolo[2,3-
inhibitor




d]pyrimidin-4-




yl)amino]piperidin-1-yl}-3-




oxopropanenitrile
















TABLE 16





HDAC Inhibitors

















vorinostat
Zolinza ®
N1-hydroxy-N8-phenyloctanediamide


romidepsin
Istodax ®
(1S,4S,7E,10S,16E,21R)-7-ethylidene-4,21-diisopropyl-2-oxa-12,13-




dithia-5,8,20,23-tetraazabicyclo[8.7.6]tricos-16-ene-3,6,9,19,22-




pentaone


chidamide
Epidaza
(E)-N-(2-amino-5-fluorophenyl)-4-((3-(pyridin-3-




yl)acrylamido)methyl)benzamide


panobinostat
Farydak ®
(E)-N-hydroxy-3-(4-(((2-(2-methyl-1H-indol-3-




yl)ethyl)amino)methyl)phenyl)acrylamide


belinostat
Beleodaq
(E)-N-hydroxy-3-(3-(N-phenylsulfamoyl)phenyl)acrylamide


valproic acid
Valproic
2-propylpentanoic acid


mocetinostat

N-(2-aminophenyl)-4-(((4-(pyridin-3-yl)pyrimidin-2-




yl)amino)methyl)benzamide


abexinostat

3-((dimethylamino)methyl)-N-(2-(4-




(hydroxycarbamoyl)phenoxy)ethyl)benzofuran-2-carboxamide


entinostat

pyridin-3-ylmethyl (4-((2-aminophenyl)carbamoyl)benzyl)carbamate


Pracinostat

(E)-3-(2-butyl-1-(2-(diethylamino)ethyl)-1H-benzo[d]imidazol-5-yl)-


(SB939)

N-hydroxyacrylamide


resminostat

(E)-3-(1-((4-((dimethylamino)methyl)phenyl)sulfonyl)-1H-pyrrol-3-




yl)-N-hydroxyacrylamide


givinostat

(6-((diethylamino)methyl)naphthalen-2-yl)methyl (4-




(hydroxycarbamoyl)phenyl)carbamate


quisinostat

N-hydroxy-2-(4-((((1-methyl-1H-indol-3-




yl)methyl)amino)methyl)piperidin-1-yl)pyrimidine-5-carboxamide


Chidamide
Epidaza ®


(HBI-8000)


kevetrin

3-cyanopropyl carbamimidothioate


CUDC-101

7-((4-((3-ethynylphenyl)amino)-7-methoxyquinazolin-6-yl)oxy)-N-




hydroxyheptanamide


AR-42

(S)-N-hydroxy-4-(3-methyl-2-phenylbutanamido)benzamide


tefinostat

cyclopentyl (S)-2-((4-(8-(hydroxyamino)-8-


(CHR-2845)

oxooctanamido)benzyl)amino)-2-phenyl acetate


CHR-3996

2-[(1R,5S)-6-[(6-fluoroquinolin-2-yl)methylamino]-3-




azabicyclo[3.1.0]hexan-3-yl]-N-hydroxypyrimidine-5-carboxamide


4SC-202

(E)-N-(2-aminophenyl)-3-[1-[4-(1-methylpyrazol-4-




yl)phenyl]sulfonylpyrrol-3-yl]prop-2-enamide; 4-




methylbenzenesulfonic acid


CG200745

(E)-N(1)-(3-(dimethylamino)propyl)-N(8)-hydroxy-2-((naphthalene-




1-loxy)methyl)oct-2-enediamide


Rocilinostat

2-(Diphenylamino)-N-(7-(hydroxyamino)-7-oxoheptyl)pyrimidine-5-


(ACY-1215)

carboxamide


ME-344

4,4′-(7-hydroxy-8-methylchroman-3,4-diyl)diphenol


sulforaphane

1-isothiocyanato-4-(methylsulfinyl)butane


Dacinostat

(E)-3-(4-(((2-(1H-indol-3-yl)ethyl)(2-


(LAQ824)

hydroxyethyl)amino)methyl)phenyl)-N-hydroxyacrylamide


Tacedinaline

4-(Acetylamino)-N-(2-aminophenyl)benzamide


(CI994)









The synthetic processes of the disclosure can tolerate a wide variety of functional groups, therefore various substituted starting materials can be used. The processes generally provide the desired final compound at or near the end of the overall process, although it may be desirable in certain instances to further convert the compound to a pharmaceutically acceptable salt thereof.


Compounds of the present disclosure can be prepared in a variety of ways using commercially available starting materials, compounds known in the literature, or from readily prepared intermediates, by employing standard synthetic methods and procedures either known to those skilled in the art, or which will be apparent to the skilled artisan in light of the teachings herein. Standard synthetic methods and procedures for the preparation of organic molecules and functional group transformations and manipulations can be obtained from the relevant scientific literature or from standard textbooks in the field. Although not limited to any one or several sources, classic texts such as Smith, M. B., March, J., March's Advanced Organic Chemistry: Reactions, Mechanisms, and Structure, 5th edition, John Wiley & Sons: New York, 2001; Greene, T. W., Wuts, P. G. M., Protective Groups in Organic Synthesis, 3rd edition, John Wiley & Sons: New York, 1999; R. Larock, Comprehensive Organic Transformations, VCH Publishers (1989); L. Fieser and M. Fieser, Fieser and Fieser's Reagents for Organic Synthesis, John Wiley and Sons (1994); and L. Paquette, ed., Encyclopedia of Reagents for Organic Synthesis, John Wiley and Sons (1995), incorporated by reference herein, are useful and recognized reference textbooks of organic synthesis known to those in the art. The following descriptions of synthetic methods are designed to illustrate, but not to limit, general procedures for the preparation of compounds of the present disclosure.


Compounds of the present disclosure can be conveniently prepared by a variety of methods familiar to those skilled in the art.


One of ordinary skill in the art will note that, during the reaction sequences and synthetic schemes described herein, the order of certain steps may be changed, such as the introduction and removal of protecting groups.


One of ordinary skill in the art will recognize that certain groups may require protection from the reaction conditions via the use of protecting groups. Protecting groups may also be used to differentiate similar functional groups in molecules. A list of protecting groups and how to introduce and remove these groups can be found in Greene, T. W., Wuts, P. G. M., Protective Groups in Organic Synthesis, 3rd edition, John Wiley & Sons: New York, 1999.


Compounds of the present disclosure inhibit the histone methyltransferase activity of G9a, also known as KMT1C (lysine methyltransferase 1C) or EHMT2 (euchromatic histone methyltransferase 2), or a mutant thereof and, accordingly, in one aspect of the disclosure, certain compounds disclosed herein are candidates for treating, or preventing certain conditions, diseases, and disorders in which EHMT2 plays a role. The present disclosure provides methods for treating conditions and diseases the course of which can be influenced by modulating the methylation status of histones or other proteins, wherein said methylation status is mediated at least in part by the activity of EHMT2. Modulation of the methylation status of histones can in turn influence the level of expression of target genes activated by methylation, and/or target genes suppressed by methylation. The method includes administering to a subject in need of such treatment, a therapeutically effective amount of a compound of the present disclosure, or a pharmaceutically acceptable salt, polymorph, solvate, or stereoisomer thereof.


Unless otherwise stated, any description of a method of treatment includes use of the compounds to provide such treatment or prophylaxis as is described herein, as well as use of the compounds to prepare a medicament to treat or prevent such condition. The treatment includes treatment of human or non-human animals including rodents and other disease models.


In still another aspect, this disclosure relates to a method of modulating the activity of EHMT2, which catalyzes the dimethylation of lysine 9 on histone H3 (H3K9) in a subject in need thereof.


The compound(s) of the present disclosure inhibit the histone methyltransferase activity of EHMT2 or a mutant thereof and, accordingly, the present disclosure also provides methods for treating conditions and diseases the course of which can be influenced by modulating the methylation status of histones or other proteins, wherein said methylation status is mediated at least in part by the activity of EHMT2. In one aspect of the disclosure, certain compounds disclosed herein are candidates for treating, or preventing certain conditions, diseases, and disorders. Modulation of the methylation status of histones can in turn influence the level of expression of target genes activated by methylation, and/or target genes suppressed by methylation. The method includes administering to a subject in need of such treatment, a therapeutically effective amount of a compound of the present disclosure.


In still another aspect, this disclosure relates to a method of modulating the activity of EHMT2, which catalyzes the dimethylation of lysine 9 on histone H3 (H3K9) in a subject in need thereof. For example, the method comprises the step of administering to a subject having a cancer expressing a mutant EHMT2 a therapeutically effective amount of a composition comprising a compound described herein and a second agent, wherein the combination inhibits histone methyltransferase activity of EHMT2, thereby treating the cancer.


For example, the EHMT2-mediated cancer is selected from the group consisting of leukemia, prostate carcinoma, hepatocellular carcinoma, lung cancer, and skin cancer.


For example, the compounds disclosed herein can be used for treating cancer. For example, the cancer is a hematological cancer. For example, the cancer is a skin cancer.


For example, the cancer is selected from the group consisting of brain and central nervous system (CNS) cancer, head and neck cancer, kidney cancer, ovarian cancer, pancreatic cancer, leukemia, lung cancer, lymphoma, myeloma, sarcoma, breast cancer, prostate cancer, and skin cancer. In some embodiments, a subject in need thereof is one who had, is having or is predisposed to developing brain and CNS cancer, kidney cancer, ovarian cancer, pancreatic cancer, leukemia, lymphoma, myeloma, skin cancer, and/or sarcoma. Exemplary brain and central CNS cancer includes medulloblastoma, oligodendroglioma, atypical teratoid/rhabdoid tumor, choroid plexus carcinoma, choroid plexus papilloma, ependymoma, glioblastoma, meningioma, neuroglial tumor, oligoastrocytoma, oligodendroglioma, and pineoblastoma. Exemplary ovarian cancer includes ovarian clear cell adenocarcinoma, ovarian endometrioid adenocarcinoma, and ovarian serous adenocarcinoma. Exemplary pancreatic cancer includes pancreatic ductal adenocarcinoma and pancreatic endocrine tumor. Exemplary skin cancer includes basal cell carcinoma, squamous cell carcinoma, melanoma, Kaposi's sarcoma, Merkel cell carcinoma, and sebaceous gland carcinoma. Exemplary sarcoma includes chondrosarcoma, clear cell sarcoma of soft tissue, ewing sarcoma, gastrointestinal stromal tumor, osteosarcoma, rhabdomyosarcoma, and not otherwise specified (NOS) sarcoma. In some embodiments, cancers to be treated by the compounds of the present invention are non NHL cancers.


For example, the cancer is selected from the group consisting of acute myeloid leukemia (AML) or chronic lymphocytic leukemia (CLL), medulloblastoma, oligodendroglioma, ovarian clear cell adenocarcinoma, ovarian endometrioid adenocarcinoma, ovarian serous adenocarcinoma, pancreatic ductal adenocarcinoma, pancreatic endocrine tumor, malignant rhabdoid tumor, astrocytoma, atypical teratoid/rhabdoid tumor, choroid plexus carcinoma, choroid plexus papilloma, ependymoma, glioblastoma, meningioma, neuroglial tumor, oligoastrocytoma, oligodendroglioma, pineoblastoma, carcinosarcoma, chordoma, extragonadal germ cell tumor, extrarenal rhabdoid tumor, schwannoma, skin squamous cell carcinoma, chondrosarcoma, clear cell sarcoma of soft tissue, ewing sarcoma, gastrointestinal stromal tumor, osteosarcoma, rhabdomyosarcoma, and not otherwise specified (NOS) sarcoma. In some embodiments, the cancer is acute myeloid leukemia (AML), chronic lymphocytic leukemia (CLL), medulloblastoma, ovarian clear cell adenocarcinoma, ovarian endometrioid adenocarcinoma, pancreatic ductal adenocarcinoma, malignant rhabdoid tumor, atypical teratoid/rhabdoid tumor, choroid plexus carcinoma, choroid plexus papilloma, glioblastoma, meningioma, pineoblastoma, carcinosarcoma, extrarenal rhabdoid tumor, schwannoma, skin squamous cell carcinoma, melanoma, chondrosarcoma, ewing sarcoma, epithelioid sarcoma, renal medullary carcinoma, diffuse large B-cell lymphoma, follicular lymphoma and/or NOS sarcoma.


As used herein, a “subject” is interchangeable with a “subject in need thereof”, both of which refer to a subject having a cancer or a disorder in which EHMT2-mediated protein methylation plays a part, or a subject having an increased risk of developing such cancer or disorder relative to the population at large. A “subject” includes a mammal. The mammal can be e.g., a human or appropriate non-human mammal, such as primate, mouse, rat, dog, cat, cow, horse, goat, camel, sheep or a pig. The subject can also be a bird or fowl. In some embodiments, the mammal is a human. A subject in need thereof can be one who has been previously diagnosed or identified as having cancer or a precancerous condition. A subject in need thereof can also be one who has (e.g., is suffering from) cancer or a precancerous condition. In some embodiments, a subject in need thereof can be one who has an increased risk of developing such disorder relative to the population at large (i.e., a subject who is predisposed to developing such disorder relative to the population at large). A subject in need thereof can have a precancerous condition. A subject in need thereof can have refractory or resistant cancer (i.e., cancer that doesn't respond or hasn't yet responded to treatment). The subject may be resistant at start of treatment or may become resistant during treatment. In some embodiments, the subject in need thereof has cancer recurrence following remission on most recent therapy. In some embodiments, the subject in need thereof received and failed all known effective therapies for cancer treatment. In some embodiments, the subject in need thereof received at least one prior therapy. In some embodiments, the subject has cancer or a cancerous condition. For example, the cancer is leukemia, prostate carcinoma, hepatocellular carcinoma, lung cancer, or melanoma.


As used herein, “candidate compound” refers to a compound of the present disclosure, or a pharmaceutically acceptable salt, polymorph or solvate thereof, that has been or will be tested in one or more in vitro or in vivo biological assays, in order to determine if that compound is likely to elicit a desired biological or medical response in a cell, tissue, system, animal or human that is being sought by a researcher or clinician. A candidate compound is a compound of the present disclosure, or a pharmaceutically acceptable salt, polymorph or solvate thereof. The biological or medical response can be the treatment of cancer. The biological or medical response can be treatment or prevention of a cell proliferative disorder. The biological response or effect can also include a change in cell proliferation or growth that occurs in vitro or in an animal model, as well as other biological changes that are observable in vitro. In vitro or in vivo biological assays can include, but are not limited to, enzymatic activity assays, electrophoretic mobility shift assays, reporter gene assays, in vitro cell viability assays, and the assays described herein.


For example, an in vitro biological assay that can be used includes the steps of (1) mixing a histone substrate (e.g., an isolated histone sample or an isolated histone peptide representative of human histone H3 residues 1-15) with recombinant EHMT2 enzymes; (2) adding a compound of the disclosure to this mixture; (3) adding non-radioactive and 3H-labeled S-Adenosyl methionine (SAM) to start the reaction; (4) adding excessive amount of non-radioactive SAM to stop the reaction; (4) washing off the free non-incorporated 3H-SAM; and (5) detecting the quantity of 3H-labeled histone substrate by any methods known in the art (e.g., by a PerkinElmer TopCount platereader).


For example, an in vitro study that can be used includes the steps of (1) treating cancer cells (e.g., breast cancer cells) with a compound of this disclosure; (2) incubating the cells for a set period of time; (3) fixing the cells; (4) treating the cells with primary antibodies that bind to dimethylated histone substrates; (5) treating the cells with a secondary antibody (e.g. an antibody conjugated to an infrared dye); (6) detecting the quantity of bound antibody by any methods known in the art (e.g., by a Licor Odyssey Infrared Scanner).


As used herein, “treating” or “treat” describes the management and care of a patient for the purpose of combating a disease, condition, or disorder and includes the administration of a compound of the present disclosure, or a pharmaceutically acceptable salt, polymorph or solvate thereof, to alleviate the symptoms or complications of a disease, condition or disorder, or to eliminate the disease, condition or disorder. The term “treat” can also include treatment of a cell in vitro or an animal model.


A compound of the present disclosure, or a pharmaceutically acceptable salt, polymorph or solvate thereof, can or may also be used to prevent a relevant disease, condition or disorder, or used to identify suitable candidates for such purposes. As used herein, “preventing,” “prevent,” or “protecting against” describes reducing or eliminating the onset of the symptoms or complications of such disease, condition or disorder.


One skilled in the art may refer to general reference texts for detailed descriptions of known techniques discussed herein or equivalent techniques. These texts include Ausubel et al., Current Protocols in Molecular Biology, John Wiley and Sons, Inc. (2005); Sambrook et al., Molecular Cloning, A Laboratory Manual (3rd edition), Cold Spring Harbor Press, Cold Spring Harbor, New York (2000); Coligan et al., Current Protocols in Immunology, John Wiley & Sons, N.Y.; Enna et al., Current Protocols in Pharmacology, John Wiley & Sons, N.Y.; Fingl et al., The Pharmacological Basis of Therapeutics (1975), Remington's Pharmaceutical Sciences, Mack Publishing Co., Easton, PA, 18th edition (1990). These texts can, of course, also be referred to in making or using an aspect of the disclosure.


As used herein, “combination therapy” or “co-therapy” includes the administration of a compound of the present disclosure, or a pharmaceutically acceptable salt, polymorph or solvate thereof, and at least a second agent as part of a specific treatment regimen intended to provide the beneficial effect from the co-action of these therapeutic agents. The beneficial effect of the combination includes, but is not limited to, pharmacokinetic or pharmacodynamic co-action resulting from the combination of therapeutic agents.


The present disclosure also provides pharmaceutical compositions comprising a compound of any of the Formulae described herein in combination with at least one pharmaceutically acceptable excipient or carrier.


A “pharmaceutical composition” is a formulation containing the compounds of the present disclosure in a form suitable for administration to a subject. In some embodiments, the pharmaceutical composition is in bulk or in unit dosage form. The unit dosage form is any of a variety of forms, including, for example, a capsule, an IV bag, a tablet, a single pump on an aerosol inhaler or a vial. The quantity of active ingredient (e.g., a formulation of the disclosed compound or salt, hydrate, solvate or isomer thereof) in a unit dose of composition is an effective amount and is varied according to the particular treatment involved. One skilled in the art will appreciate that it is sometimes necessary to make routine variations to the dosage depending on the age and condition of the patient. The dosage will also depend on the route of administration. A variety of routes are contemplated, including oral, pulmonary, rectal, parenteral, transdermal, subcutaneous, intravenous, intramuscular, intraperitoneal, inhalational, buccal, sublingual, intrapleural, intrathecal, intranasal, and the like. Dosage forms for the topical or transdermal administration of a compound of this disclosure include powders, sprays, ointments, pastes, creams, lotions, gels, solutions, patches and inhalants. In some embodiments, the active compound is mixed under sterile conditions with a pharmaceutically acceptable carrier, and with any preservatives, buffers, or propellants that are required.


As used herein, the phrase “pharmaceutically acceptable” refers to those compounds, anions, cations, materials, compositions, carriers, and/or dosage forms which are, within the scope of sound medical judgment, suitable for use in contact with the tissues of human beings and animals without excessive toxicity, irritation, allergic response, or other problem or complication, commensurate with a reasonable benefit/risk ratio.


“Pharmaceutically acceptable excipient” means an excipient that is useful in preparing a pharmaceutical composition that is generally safe, non-toxic and neither biologically nor otherwise undesirable, and includes excipient that is acceptable for veterinary use as well as human pharmaceutical use. A “pharmaceutically acceptable excipient” as used in the specification and claims includes both one and more than one such excipient.


A pharmaceutical composition of the disclosure is formulated to be compatible with its intended route of administration. Examples of routes of administration include parenteral, e.g., intravenous, intradermal, subcutaneous, oral (e.g., inhalation), transdermal (topical), and transmucosal administration. Solutions or suspensions used for parenteral, intradermal, or subcutaneous application can include the following components: a sterile diluent such as water for injection, saline solution, fixed oils, polyethylene glycols, glycerine, propylene glycol or other synthetic solvents; antibacterial agents such as benzyl alcohol or methyl parabens; antioxidants such as ascorbic acid or sodium bisulfite; chelating agents such as ethylenediaminetetraacetic acid; buffers such as acetates, citrates or phosphates, and agents for the adjustment of tonicity such as sodium chloride or dextrose. The pH can be adjusted with acids or bases, such as hydrochloric acid or sodium hydroxide. The parenteral preparation can be enclosed in ampoules, disposable syringes or multiple dose vials made of glass or plastic.


A compound or pharmaceutical composition of the disclosure can be administered to a subject in many of the well-known methods currently used for chemotherapeutic treatment. For example, for treatment of cancers, a compound of the disclosure may be injected directly into tumors, injected into the blood stream or body cavities or taken orally or applied through the skin with patches. The dose chosen should be sufficient to constitute effective treatment but not so high as to cause unacceptable side effects. The state of the disease condition (e.g., cancer, precancer, and the like) and the health of the patient should preferably be closely monitored during and for a reasonable period after treatment.


The term “therapeutically effective amount”, as used herein, refers to an amount of a pharmaceutical agent to treat, ameliorate, or prevent an identified disease or condition, or to exhibit a detectable therapeutic or inhibitory effect. The effect can be detected by any assay method known in the art. The precise effective amount for a subject will depend upon the subject's body weight, size, and health; the nature and extent of the condition; and the therapeutic or combination of therapeutics selected for administration. Therapeutically effective amounts for a given situation can be determined by routine experimentation that is within the skill and judgment of the clinician. In a preferred aspect, the disease or condition to be treated is cancer. In another aspect, the disease or condition to be treated is a cell proliferative disorder.


For any compound, the therapeutically effective amount can be estimated initially either in cell culture assays, e.g., of neoplastic cells, or in animal models, usually rats, mice, rabbits, dogs, or pigs. The animal model may also be used to determine the appropriate concentration range and route of administration. Such information can then be used to determine useful doses and routes for administration in humans. Therapeutic/prophylactic efficacy and toxicity may be determined by standard pharmaceutical procedures in cell cultures or experimental animals, e.g., ED50 (the dose therapeutically effective in 50% of the population) and LD50 (the dose lethal to 50% of the population). The dose ratio between toxic and therapeutic effects is the therapeutic index, and it can be expressed as the ratio, LD50/ED50. Pharmaceutical compositions that exhibit large therapeutic indices are preferred. The dosage may vary within this range depending upon the dosage form employed, sensitivity of the patient, and the route of administration.


Dosage and administration are adjusted to provide sufficient levels of the active agent(s) or to maintain the desired effect. Factors which may be taken into account include the severity of the disease state, general health of the subject, age, weight, and gender of the subject, diet, time and frequency of administration, drug combination(s), reaction sensitivities, and tolerance/response to therapy. Long-acting pharmaceutical compositions may be administered every 3 to 4 days, every week, or once every two weeks depending on half-life and clearance rate of the particular formulation.


The pharmaceutical compositions containing active compounds of the present disclosure may be manufactured in a manner that is generally known, e.g., by means of conventional mixing, dissolving, granulating, dragee-making, levigating, emulsifying, encapsulating, entrapping, or lyophilizing processes. Pharmaceutical compositions may be formulated in a conventional manner using one or more pharmaceutically acceptable carriers comprising excipients and/or auxiliaries that facilitate processing of the active compounds into preparations that can be used pharmaceutically. Of course, the appropriate formulation is dependent upon the route of administration chosen.


Pharmaceutical compositions suitable for injectable use include sterile aqueous solutions (where water soluble) or dispersions and sterile powders for the extemporaneous preparation of sterile injectable solutions or dispersion. For intravenous administration, suitable carriers include physiological saline, bacteriostatic water, Cremophor EL™ (BASF, Parsippany, N.J.) or phosphate buffered saline (PBS). In all cases, the composition must be sterile and should be fluid to the extent that easy syringeability exists. It must be stable under the conditions of manufacture and storage and must be preserved against the contaminating action of microorganisms such as bacteria and fungi. The carrier can be a solvent or dispersion medium containing, for example, water, ethanol, polyol (for example, glycerol, propylene glycol, and liquid polyethylene glycol, and the like), and suitable mixtures thereof. The proper fluidity can be maintained, for example, by the use of a coating such as lecithin, by the maintenance of the required particle size in the case of dispersion and by the use of surfactants. Prevention of the action of microorganisms can be achieved by various antibacterial and antifungal agents, for example, parabens, chlorobutanol, phenol, ascorbic acid, thimerosal, and the like. In many cases, it will be preferable to include isotonic agents, for example, sugars, polyalcohols such as mannitol and sorbitol, and sodium chloride in the composition. Prolonged absorption of the injectable compositions can be brought about by including in the composition an agent which delays absorption, for example, aluminum monostearate and gelatin.


Sterile injectable solutions can be prepared by incorporating the active compound in the required amount in an appropriate solvent with one or a combination of ingredients enumerated above, as required, followed by filtered sterilization. Generally, dispersions are prepared by incorporating the active compound into a sterile vehicle that contains a basic dispersion medium and the required other ingredients from those enumerated above. In the case of sterile powders for the preparation of sterile injectable solutions, methods of preparation are vacuum drying and freeze-drying that yields a powder of the active ingredient plus any additional desired ingredient from a previously sterile-filtered solution thereof.


Oral compositions generally include an inert diluent or an edible pharmaceutically acceptable carrier. They can be enclosed in gelatin capsules or compressed into tablets. For the purpose of oral therapeutic administration, the active compound can be incorporated with excipients and used in the form of tablets, troches, or capsules. Oral compositions can also be prepared using a fluid carrier for use as a mouthwash, wherein the compound in the fluid carrier is applied orally and swished and expectorated or swallowed. Pharmaceutically compatible binding agents, and/or adjuvant materials can be included as part of the composition. The tablets, pills, capsules, troches and the like can contain any of the following ingredients, or compounds of a similar nature: a binder such as microcrystalline cellulose, gum tragacanth or gelatin; an excipient such as starch or lactose, a disintegrating agent such as alginic acid, Primogel, or corn starch; a lubricant such as magnesium stearate or Sterotes; a glidant such as colloidal silicon dioxide; a sweetening agent such as sucrose or saccharin; or a flavoring agent such as peppermint, methyl salicylate, or orange flavoring.


For administration by inhalation, the compounds are delivered in the form of an aerosol spray from pressured container or dispenser, which contains a suitable propellant, e.g., a gas such as carbon dioxide, or a nebulizer.


Systemic administration can also be by transmucosal or transdermal means. For transmucosal or transdermal administration, penetrants appropriate to the barrier to be permeated are used in the formulation. Such penetrants are generally known in the art, and include, for example, for transmucosal administration, detergents, bile salts, and fusidic acid derivatives. Transmucosal administration can be accomplished through the use of nasal sprays or suppositories. For transdermal administration, the active compounds are formulated into ointments, salves, gels, or creams as generally known in the art.


The active compounds can be prepared with pharmaceutically acceptable carriers that will protect the compound against rapid elimination from the body, such as a controlled release formulation, including implants and microencapsulated delivery systems. Biodegradable, biocompatible polymers can be used, such as ethylene vinyl acetate, polyanhydrides, polyglycolic acid, collagen, polyorthoesters, and polylactic acid. Methods for preparation of such formulations will be apparent to those skilled in the art. The materials can also be obtained commercially from Alza Corporation and Nova Pharmaceuticals, Inc. Liposomal suspensions (including liposomes targeted to infected cells with monoclonal antibodies to viral antigens) can also be used as pharmaceutically acceptable carriers. These can be prepared according to methods known to those skilled in the art, for example, as described in U.S. Pat. No. 4,522,811.


It is especially advantageous to formulate oral or parenteral compositions in dosage unit form for ease of administration and uniformity of dosage. Dosage unit form as used herein refers to physically discrete units suited as unitary dosages for the subject to be treated; each unit containing a predetermined quantity of active compound calculated to produce the desired therapeutic effect in association with the required pharmaceutical carrier. The specification for the dosage unit forms of the disclosure are dictated by and directly dependent on the unique characteristics of the active compound and the particular therapeutic effect to be achieved.


In therapeutic applications, the dosages of the pharmaceutical compositions used in accordance with the disclosure vary depending on the agent, the age, weight, and clinical condition of the recipient patient, and the experience and judgment of the clinician or practitioner administering the therapy, among other factors affecting the selected dosage. Generally, the dose should be sufficient to result in slowing, and preferably regressing, the growth of the tumors and also preferably causing complete regression of the cancer. Dosages can range from about 0.01 mg/kg per day to about 5000 mg/kg per day. In preferred aspects, dosages can range from about 1 mg/kg per day to about 1000 mg/kg per day. In an aspect, the dose will be in the range of about 0.1 mg/day to about 50 g/day; about 0.1 mg/day to about 25 g/day; about 0.1 mg/day to about 10 g/day; about 0.1 mg to about 3 g/day; or about 0.1 mg to about 1 g/day, in single, divided, or continuous doses (which dose may be adjusted for the patient's weight in kg, body surface area in m2, and age in years). An effective amount of a pharmaceutical agent is that which provides an objectively identifiable improvement as noted by the clinician or other qualified observer. Improvement in survival and growth indicates regression. As used herein, the term “dosage effective manner” refers to amount of an active compound to produce the desired biological effect in a subject or cell.


The pharmaceutical compositions can be included in a container, pack, or dispenser together with instructions for administration.


The compounds of the present disclosure are capable of further forming salts. All of these forms are also contemplated within the scope of the claimed disclosure.


As used herein, “pharmaceutically acceptable salts” refer to derivatives of the compounds of the present disclosure wherein the parent compound is modified by making acid or base salts thereof. Examples of pharmaceutically acceptable salts include, but are not limited to, mineral or organic acid salts of basic residues such as amines, alkali or organic salts of acidic residues such as carboxylic acids, and the like. The pharmaceutically acceptable salts include the conventional non-toxic salts or the quaternary ammonium salts of the parent compound formed, for example, from non-toxic inorganic or organic acids. For example, such conventional non-toxic salts include, but are not limited to, those derived from inorganic and organic acids selected from 2-acetoxybenzoic, 2-hydroxyethane sulfonic, acetic, ascorbic, benzene sulfonic, benzoic, bicarbonic, carbonic, citric, edetic, ethane disulfonic, 1,2-ethane sulfonic, fumaric, glucoheptonic, gluconic, glutamic, glycolic, glycollyarsanilic, hexylresorcinic, hydrabamic, hydrobromic, hydrochloric, hydroiodic, hydroxymaleic, hydroxynaphthoic, isethionic, lactic, lactobionic, lauryl sulfonic, maleic, malic, mandelic, methane sulfonic, napsylic, nitric, oxalic, pamoic, pantothenic, phenylacetic, phosphoric, polygalacturonic, propionic, salicylic, stearic, subacetic, succinic, sulfamic, sulfanilic, sulfuric, tannic, tartaric, toluene sulfonic, and the commonly occurring amine acids, e.g., glycine, alanine, phenylalanine, arginine, etc.


Other examples of pharmaceutically acceptable salts include hexanoic acid, cyclopentane propionic acid, pyruvic acid, malonic acid, 3-(4-hydroxybenzoyl)benzoic acid, cinnamic acid, 4-chlorobenzenesulfonic acid, 2-naphthalenesulfonic acid, 4-toluenesulfonic acid, camphorsulfonic acid, 4-methylbicyclo-[2.2.2]-oct-2-ene-1-carboxylic acid, 3-phenylpropionic acid, trimethylacetic acid, tertiary butylacetic acid, muconic acid, and the like. The present disclosure also encompasses salts formed when an acidic proton present in the parent compound either is replaced by a metal ion, e.g., an alkali metal ion, an alkaline earth ion, or an aluminum ion; or coordinates with an organic base such as ethanolamine, diethanolamine, triethanolamine, tromethamine, N-methylglucamine, and the like. In the salt form, it is understood that the ratio of the compound to the cation or anion of the salt can be 1:1, or any ration other than 1:1, e.g., 3:1, 2:1, 1:2, or 1:3.


It should be understood that all references to pharmaceutically acceptable salts include solvent addition forms (solvates) or crystal forms (polymorphs) as defined herein, of the same salt.


The compounds of the present disclosure can also be prepared as esters, for example, pharmaceutically acceptable esters. For example, a carboxylic acid function group in a compound can be converted to its corresponding ester, e.g., a methyl, ethyl or other ester. Also, an alcohol group in a compound can be converted to its corresponding ester, e.g., acetate, propionate or other ester.


The compounds, or pharmaceutically acceptable salts thereof, are administered orally, nasally, transdermally, pulmonary, inhalationally, buccally, sublingually, intraperitoneally, subcutaneously, intramuscularly, intravenously, rectally, intrapleurally, intrathecally and parenterally. In some embodiments, the compound is administered orally. One skilled in the art will recognize the advantages of certain routes of administration.


The dosage regimen utilizing the compounds is selected in accordance with a variety of factors including type, species, age, weight, sex and medical condition of the patient; the severity of the condition to be treated; the route of administration; the renal and hepatic function of the patient; and the particular compound or salt thereof employed. An ordinarily skilled physician or veterinarian can readily determine and prescribe the effective amount of the drug required to prevent, counter, or arrest the progress of the condition.


Techniques for formulation and administration of the disclosed compounds of the disclosure can be found in Remington: the Science and Practice of Pharmacy, 19th edition, Mack Publishing Co., Easton, PA (1995). In some embodiments, the compounds described herein, and the pharmaceutically acceptable salts thereof, are used in pharmaceutical preparations in combination with a pharmaceutically acceptable carrier or diluent. Suitable pharmaceutically acceptable carriers include inert solid fillers or diluents and sterile aqueous or organic solutions. The compounds will be present in such pharmaceutical compositions in amounts sufficient to provide the desired dosage amount in the range described herein.


All percentages and ratios used herein, unless otherwise indicated, are by weight. Other features and advantages of the present disclosure are apparent from the different examples. The provided examples illustrate different components and methodology useful in practicing the present disclosure. The examples do not limit the claimed disclosure. Based on the present disclosure the skilled artisan can identify and employ other components and methodology useful for practicing the present disclosure.


In the synthetic schemes described herein, compounds may be drawn with one particular configuration for simplicity. Such particular configurations are not to be construed as limiting the disclosure to one or another isomer, tautomer, regioisomer or stereoisomer, nor does it exclude mixtures of isomers, tautomers, regioisomers or stereoisomers; however, it will be understood that a given isomer, tautomer, regioisomer or stereoisomer may have a higher level of activity than another isomer, tautomer, regioisomer or stereoisomer.


Compounds designed, selected and/or optimized by methods described above, once produced, can be characterized using a variety of assays known to those skilled in the art to determine whether the compounds have biological activity. For example, the molecules can be characterized by conventional assays, including but not limited to those assays described below, to determine whether they have a predicted activity, binding activity and/or binding specificity.


Furthermore, high-throughput screening can be used to speed up analysis using such assays. As a result, it can be possible to rapidly screen the molecules described herein for activity, using techniques known in the art. General methodologies for performing high-throughput screening are described, for example, in Devlin (1998) High Throughput Screening, Marcel Dekker; and U.S. Pat. No. 5,763,263. High-throughput assays can use one or more different assay techniques including, but not limited to, those described below.


All publications and patent documents cited herein are incorporated herein by reference as if each such publication or document was specifically and individually indicated to be incorporated herein by reference. Citation of publications and patent documents is not intended as an admission that any is pertinent prior art, nor does it constitute any admission as to the contents or date of the same. The invention having now been described by way of written description, those of skill in the art will recognize that the invention can be practiced in a variety of embodiments and that the foregoing description and examples below are for purposes of illustration and not limitation of the claims that follow.


Example 1: Synthesis of EHMT2 Inhibitor Compounds

EHMT2 inhibitor compounds useful for the treatment of blood disorders as provided herein were synthesized or may be synthesized by, e.g., methods described in U.S. Application Nos. 62/323,602, 62/348,837, 62/402,997, 62/402,863, 62/509,620, 62/436,139, 62/517,840, 62/573,442, 62/681,804, 62/746,252, and 62/746,495, and Ser. No. 15/601,888, and PCT Application Nos. PCT/US2017/027918, PCT/US2017/054468, PCT/US2017/067192, PCT/US2018/056333, and PCT/US2018/056428, the contents of each of which are incorporated herein by reference in their entireties.


Example 2: The Effect of EHMT2 Inhibitor Compounds on Cell Polarization In Vitro

To evaluate the effects of Compounds on T regulatory (Treg) and Th17 cell polarization, naive CD4 T cells were isolated from human peripheral blood mononuclear cells (PBMCs) using magnetic bead separation and cultured with or without compound in the presence of Treg or Th17 polarizing cytokines. For Treg polarization, naive cells were cultured for five days with anti-CD3, anti-CD28, TL-2 and TGFβ. After five days, the cells were then evaluated for CD25 and Foxp3 expression by flow cytometry. For Th17 polarization, naive cells were cultured for 10-11 days with anti-CD3, anti-CD28, IL-10, IL-6, IL-23, TGFβ, anti-IFNγ antibody and anti-IL-4 antibody. After 10-11 days cells were stimulated and then evaluated for IL-17 and IFNγ by flow cytometry.


To evaluate the effects of Compounds 205 and 571 on Th17 cell polarization, naive cells were isolated from human peripheral blood mononuclear cells (PBMCs), stimulated with coated CD3 antibody and soluble CD28 antibody, and cultured with or without compound in the presence of Th17 polarizing cytokines for 11 days as described in [0601]. Compound was replenished at either day three or day four. After 11 days of treatment, cells were stimulated with PMA, ionomycin, brefeldin A and monensin, and then evaluated for IL-17 and IFNγ by flow cytometry. Treatment with Compounds 205 and 571 resulted in a dose-dependent increase in the percentage of polarized Th17 cells in vitro.


To evaluate the effects of Compound 571 on Treg cell polarization, naive cells were isolated from human peripheral blood mononuclear cells (PBMCs), stimulated with coated CD3 antibody and soluble CD28 antibody, and cultured with or without compound in the presence of Treg polarizing cytokines for five days, as described in [0601]. Compound was replenished at either day three or day four. Treatment with Compound 571 resulted in anin polarized Treg cells in vitro. The results of the studies are summarized in FIGS. 1 and 2.


Example 3. The Effect of EHMT2 Inhibitor Compounds on T Regulatory Cell Polarization

Naive CD4 T cells were isolated from healthy donor PBMCs using magnetic bead separation and were incubated for six days with cytokine cocktail to promote polarization to T regulatory cells, as described in [0601]. Cells were simultaneously treated with various concentrations of G9a inhibitors, with compound replenishment occurring at either day three or day four. Polarization to T regulatory cells was assessed by flow cytometry using Foxp3 and CD25. Methyl mark (H3K9me2) was also assessed by flow cytometry. The results of the study are summarized in FIGS. 3 and 4A-4B.


Example 4. The Effect of EHMT2 Inhibitor Compounds on Th17 Cell Polarization

Naive CD4 T cells were isolated from healthy donor PBMCs using magnetic bead separation and were incubated with cytokine cocktail to promote polarization to Th17 cells, as described in [0601]. Cells were simultaneously treated with various concentrations of G9a inhibitors, with compound replenishment occurring at day three or four. Polarization to Th17 cells was assessed by flow cytometry using IL-17A and IFNy. Methyl mark (H3K9me2) was also assessed by flow cytometry. The results of the study are summarized in FIGS. 5 and 6A-6B.

Claims
  • 1. A method of preventing or treating a disease or disorder associated with overexpression of EHMT2, comprising administering to a subject in need thereof a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor.
  • 2. (canceled)
  • 3. A method of preventing or treating an immune-mediated disease, comprising administering to a subject in need thereof a first agent in a therapeutically effective amount, wherein the first agent comprises an EHMT2 inhibitor.
  • 4. The method of claim 1, further comprising administering to the subject one or more additional treatment modalities in a therapeutically effective amount, wherein the one or more additional treatment modalities comprises one or more second therapeutic agents.
  • 5. The method of claim 3, wherein the immune-mediated disease is selected from the group comprising rheumatoid arthritis, multiple sclerosis, psoriasis, psoriatic disorders, psoriatic arthritis, and inflammatory bowel disease.
  • 6-58. (canceled)
  • 59. The method of claim 3, wherein the EHMT2 inhibitor is a compound of Formula (I):
  • 60-65. (canceled)
  • 66. The method of claim 59, wherein the EHMT2 inhibitor is a compound of Formula (II):
  • 67. The method of claim 66, wherein the EHMT2 inhibitor is a compound of Formula (IIa1), (IIa2), (IIa3), (IIa4), or (IIa5):
  • 68-75. (canceled)
  • 76. The method of claim 59, wherein the EHMT2 inhibitor is a compound of Formula (III):
  • 77-81. (canceled)
  • 82. The method of claim 59, wherein the EHMT2 inhibitor is a compound of Formula (IV):
  • 83-101. (canceled)
  • 102. The method of claim 3, wherein the EHMT2 inhibitor is a compound of Formula (V):
  • 103-104. (canceled)
  • 105. The method of claim 59, wherein the EHMT2 inhibitor is a compound of Formula (VII):
  • 106. (canceled)
  • 107. The method of claim 59, wherein the EHMT2 inhibitor is a compound of Formula (VIIIa):
  • 108. (canceled)
  • 109. The method of claim 59, wherein the EHMT2 inhibitor is a compound of Formula (VIIIc):
  • 110. The method of claim 3, wherein the EHMT2 inhibitor is a compound of (IX):
  • 111-122. (canceled)
  • 123. The method of claim 3, wherein the EHMT2 inhibitor is a compound of Formula (I′):
  • 124. The method of claim 3, wherein the EHMT2 inhibitor is a compound of Formula (I′), (II″), or (III″):
  • 125-178. (canceled)
  • 179. The method of claim 3, wherein the EHMT2 inhibitor is a compound of Formula (I′″), (II′″), or (III′″):
  • 180-203. (canceled)
  • 204. The method of claim 3, wherein EHMT2 inhibitor is selected from those in Tables 1A-1E, 2-4, 4A, and 5, and pharmaceutically acceptable salts thereof.
  • 205. The method of claim 3, wherein the EHMT2 inhibitor is a compound selected from Compound Nos. A75, CA51, CA70, D1R, D2, D3, D4R, D5R, D6, and D7, tautomers thereof, pharmaceutically acceptable salts thereof, and pharmaceutically acceptable salts of the tautomers.
  • 206-230. (canceled)
  • 231. A pharmaceutical composition comprising an EHMT2 inhibitor of claim 59, and one or more second agents.
  • 232-269. (canceled)
RELATED APPLICATIONS

This application is a continuation of U.S. application Ser. No. 16/756,566, filed on Apr. 16, 2020, which is a U.S. National Phase application, filed under 35 U.S.C. § 371, of International Application No. PCT/US2018/056511, filed Oct. 18, 2018, which claims benefit of, and priority to, U.S. Application No. 62/574,128, filed on Oct. 18, 2017, the entire contents of each of which are incorporated herein by reference.

Provisional Applications (1)
Number Date Country
62574128 Oct 2017 US
Continuations (1)
Number Date Country
Parent 16756566 Apr 2020 US
Child 18466908 US