The present invention relates generally to a device for emulsification, and especially to a device to form a uniform micro-droplet for Digital PCR.
Digital polymerase chain reaction (dPCR) is a system to directly quantify and clonally amplify nucleic acids, e.g., DNA, cDNA or RNA. Conventional PCR is generally used for measuring nucleic acid amounts and is carried out by a single reaction per sample. Utilizing dPCR methodology, a single reaction is also carried out on a sample, however the sample is separated into a large number of partitions and the reaction is carried out in each partition individually. This separation allows for a more reliable collection and sensitive measurement of nucleic acid amounts.
In dPCR, a sample is partitioned so that individual nucleic acid molecules within the sample are localized and concentrated within many separate regions. The capture or isolation of individual nucleic acid molecules can be performed in micro well plates, capillaries, the dispersed phase of an emulsion, and arrays of miniaturized chambers, as well as on nucleic acid binding surfaces. The partitioning of the sample allows one to estimate the number of different molecules by assuming that the molecule population follows the Poisson distribution. As a result, each partitioned sample will contain “0” or “1” molecules, or a negative or positive reaction, respectively. After PCR amplification, nucleic acids can be quantified by counting the regions that contain PCR end-product, positive reactions. In conventional PCR, the number of PCR amplification cycles is proportional to the starting copy number. dPCR, however, is not dependent on the number of amplification cycles to determine the initial sample amount, eliminating the reliance on uncertain exponential data to quantify target nucleic acids and therefore provides absolute quantification.
The present invention aims to form emulsified micro-droplet applied to Droplet Digital PCR. During droplet generation, uniformity of droplets is difficult to control. Digital PCR usually needs very small size droplets, which may act as micro-reactors. Many factors may impact on the quality of droplet formation. In PCR, droplet size usually ranges from 10˜500 μm, and the preferred number of droplets is less than 10,000,000, otherwise, the cost of detection will be high. As consumables, the manufacturing cost of the droplet generator can block its application to digital PCR. Thus, this invention gives a new approach to generate droplets with high uniformity, high efficiency, low cost and much more simplicity.
Since digital PCR was presented, hundreds of methods and devices had been invented. Typical device is ddPCR from BioRAD, USA. ddPCR introduced a microfluidic channel with cross flow to generate droplets. A similar method is used in RainDrop dPCR system, which also utilizes the microfluidic channel to generate droplets for PCR. STILLA's Naica system employs a special geometric structure in a microfluidic chip to generate a large number of uniform droplets. These devices are typical products in current digital PCR market, and they all utilize a form of micro-chip to support their sample dispersion.
The previous methods have utilized either a shear force to generate droplets or a spontaneous droplet generation method. Many have used a cross flow to cut off the continuous phase into a dispersed phase. Some methods rely on the geometric structure of the micro-channel, which applies pressure on the dispersion phase to self-break into droplets. The later method consumes less energy and it is easier to control.
A large number of prior art devices uses the above methods. For example, U.S. Pat. No. 6,281,254 uses a stepped structure to spontaneously generate droplets. In such a chip, a micro-channel with a certain aspect ratio is formed with an aligned dock in between the two layers. When liquid thread flows through the channel, the volume change causes the stream to breakup and form a series of droplets.
CN107427788A and JP2018511466A also use a stepped structure in their chips to realize the droplet generation. Compared to the traditional one step structure, this device has multiple steps.
US20130078164A1 and US20150258543A1 utilize an inclined slope in a channel structure, with a continuous geometric change. In this case the surface tension will break the flatten thread into a series of droplets. U.S. Pat. No. 9,816,133 constructs a group of such a channel for mass production of droplets. Similar method are used in US20080314761A1 and US20180085762A1.
Most prior art systems have constructed micro-channels in a chip. Therefore, this kind of emulsification are referred to as step emulsification or micro-channel emulsification. This type of flat channel structure can also be used in membrane. US20090264550 present a manufacturing method to thermal stretch a membrane, which can cause the deformation of the original micro-channels into a flatten micro-channels, such as a box into a rectangle or a circle into an ellipse.
The prior art is mainly based on a geometric structure with a specific aspect ratio. With such a structure, surface tension is a major power to generate droplet. Without a cross flow, only one-way energy input is required to apply on the dispersed phase, and droplet size and uniformity only relies on the geometric parameters.
The problems associated with currently available devices and inventions is that they all have implemented the spontaneous droplet formation method on a micro-chip. However, the manufacturing of such micro-chips is costly, resulting in expensive final products.
The present invention provides a simple method of generating small droplets, without requiring for a complex microfluidics technology. The present invention utilizes modified traditional pipette tips, which are used to transfer fluids to the PCR devices. Pipette tips are inexpensive and commonly used in most medical and biological application. The present invention can effectively upgrade the traditional regular quantitative PCR device into a digital PCR instrument. With the micro-pipette tip presented by this invention can easily generate uniform droplets and operate a thermal cycle. Together with a monolayer image processing method, the total cost of the digital PCR will be significantly lower.
A micro-droplet emulsifier for generating micron size droplet emulsions is disclosed. The micro-droplet emulsifier comprises of a micro-pipette, a micro-droplet generator head that is attached to the micro-pipette, and a continuous-phase liquid chamber, in which the emulsion is formed. The micro-droplet generator head comprises of a plurality of flat micro-channels that form droplets as the liquid passes through them. In order to fit the droplet generator head onto the micro-pipette, a traditional pipette tip is cut to enlarge the end orifice. Any size micro-pipette can be manufactured having a desired exit orifice.
The micro-droplet generator head comprises of a plurality of flat micro-channels. Flat is defined at a cross sectional shape that has a large aspect ratio, namely a large length to width.
In one embodiment of the present invention, there only one series of micro-channels. And in another embodiment, each micro-channels opens into a larger-micro-channel or pores. This is achieved by bonding two different membranes onto each other. One membrane has the smaller micro-channels and the other has the larger ones. By aligning the channels and bonding the two membranes, a two-chamber system of the present invention is constructed. The micro-channels are flat (in a slit form or elongated).
In another embodiment of the present invention, the micro-channels in the second membrane are overlaid on the micro-channels in the first membrane in a cross direction. When a liquid stream flows into such a cross-channel system, the stream pinches off rapidly because of significant droplet deformation.
This invention is mainly applied in the droplet formation of digital PCR application. There is no prior art based on pipette tip for digital PCR products. Both a manual operation and an automation control are easily realized. A single tip or multiple tips can be used to implement the batch droplet formation.
The present device can be used for genetic testing, medical and biological research Labs, and clinical diagnosis for genetic diseases and cancers.
One objective of the present invention is to provide a device to be used in digital PCRs. Compared with the current spontaneous emulsification, this invention, based on the micro-pipette tip, makes it possible to upgrade a traditional qPCR into a digital PCR, making the droplet generation more flexible in the specific application, lower the cost of the digital PCR. With a pipette tip with droplet formation function, PCR application becomes more extensible for manual operation in the lab or automatic operation in mass analysis.
Another objective of the present invention is to provide a low cost, fast, more flexible, and easy to operate device for digital PCR.
Another objective of the present invention is to provide an easy way to realize the droplet formation, minimize the cost for digital PCR, maximize the application of digital PCR, and integrate traditional qPCR system easily.
Embodiments herein will hereinafter be described in conjunction with the appended drawings provided to illustrate and not to limit the scope of the claims, wherein like designations denote like elements, and in which:
The Figures are not intended to be exhaustive or to limit the present invention to the precise form disclosed. It should be understood that the invention can be practiced with modification and alteration, and that the disclosed technology be limited only by the claims and equivalents thereof.
The technology disclosed herein, in accordance with one or more various embodiments, is described in detail with reference to the following Figures. The drawings are provided for purposes of illustration only and merely depict typical or example embodiments of the disclosed technology. These drawings are provided to facilitate the reader's understanding of the disclosed technology and shall not be considered limiting of the breadth, scope, or applicability thereof. It should be noted that for clarity and ease of illustration these drawings are not necessarily made to scale.
This invention presents a method to realize micro-droplet emulsions using a micro-pipette.
In order to make this device, a standard 200 μl pipette 102 is cut off from the end orifice to form a circular cross section of at least 3 mm in diameter. Any other size pipettes, including 10 μl, 20 μl, 50 μl, 500 μl and 1 ml in volume, can also be used. Then, a micro-droplet-generator-head 310 (
Another embodiment of the present invention with high throughput is shown in
Another embodiment of the present invention is a step emulsification based Pattern as shown in
The process of droplet formation in the present microchannels are shown in
In another embodiment of the same device, as depicted in
Aspect ratio of the micro channel is defined as the height of channel over the width of the channel, if the height of the channel is 140 microns, and the width of the channel is 4.3 microns, the aspect ratio will be 32.6. the range of aspect ratios are greater than 3.0, they may be in the range of 3 to 40.
The size and the shape of the channels are designed to facilitate the breakup of the liquid into droplets as soon as the liquid exits the channels. The number and spacing's of the channels are also determined to prevent the coalescence of the droplets as they form. If the channels are too close to each other the droplets will touch and coalesce. The spacing in between micro pores is determined by the droplet diameter, and it is greater than 2 times of the droplet diameter, and preferably 3˜5 times of the droplet diameter. Also the number of droplets generated per unit area is in the range from 10˜20,000 per square centimetre for the droplet diameters in the range of 5 microns to 200 microns.
Because of small size of the micro-channels, external liquid cannot be drawn back into the tip. Therefore, the continuous phase liquid is injected into the tip from the other opening end 105 to fill the pipette cap or the chamber.
While a dispersed phase liquid is injected into the tip, the air lock resists the injection of the liquid to fill the tip. Therefore, an external pressure is required to drive the liquid flow and venting out the remaining air in the tip and making the liquid reach the inner surface of micro pores of the socket head. It is noted that the depth of the micro channels are far less than the depth of the tip, and the volume of the remaining air in the micro channel is negligible.
Once the micro-pipette is filled with the dispersed phase liquid, the tip is immersed into a chamber, such as a pipette cap, that contains the continuous phase liquid, after air is vented out. Keeping the pressure to drive the dispersed phase into the flat micro-channels, the liquid will be self-broken into micro-droplets to form a emulsified droplet when in contact with the continuous phase. The micro-droplets may flow to the bottom of the tube by gravity.
Micro-droplets can be generated at a wide range of flow rates, varying from 1 to 100 microliter/min. The flow rate of the dispersed phase can be easily changed by changing the pumping rate of a pump, and without affecting the drop size. The number and generation rate of the micro-droplets depends on the emulsification performance of the continuous phase, droplet size and number of the micro-channel. For example, a single micro channel of aspect ratio in the range of 3.0 to 20, can generate droplet diameters in the range of 50˜300 microns with frequencies in the range of 5˜30 Hz. Usually, with the same channel size and the same time, the stepped combo channel generates more droplets than simple micro channel, and the star shape combo channel generates more droplets than the stepped combo channel.
The size of the micro-droplets that are formed depend on the following factors: (i) The material of the droplet generator that dictates the contact angle of the droplet at the exit of the channel, preferably hydrophobic; (ii) the shape of the micro-channel, preferably flatten shape such as rectangle or ellipse; (iii) the aspect ratio of the cross section of micro-channel, preferably greater than 3:1; (iv) the depth of micro-channel, enough for the self-breakup in the channel.
The table below shows the range of nozzles that can provide proper droplets.
The main principals of the droplet formation in the present micro-channel device are as follows: By forcing a liquid through a straight through micro-channel, droplets are formed at the exit of the pores. This is referred to as Edge Based Droplet Generation. Droplets may fall to the bottom of the pipette tip by the force of gravity (since aqueous droplets are heavier than the surrounding oil). Since droplets may stick to the exit of the pores, an external flow may be needed to separate the droplets from the pore surfaces or dispersed them in the continuous phase. This can be achieved, by simply shaking the pipette, which make the droplets fall off from the tip.
After droplets are formed, the tube containing the droplets can be heated and amplified in thermal cycling machine. Then the amplified emulsion will be poured into a reader chip. The reader apparatus is usually composed of air pressure control system, optical imaging capture and mono-layer chip in which all the droplets are introduced into the observe area under the control of air pressure of inlet and outlet. In order to keep the fluid at the edges of the system and the center line moving in a perpendicular line, the shape of the edge is modified as a curve edge to slower the edge flow rate.
The detail operation for optical observation is that the tube is firstly placed in a holder and then the cover is opened after the temperature returns room temperature. Taking a reader chip to cover the tube completely and assemble the holder and chip together.
The combined chip is inclined inversely and the emulsion in the tube will flow into the chip reader. With the control of the air pressure at the outlet, all emulsion will pave in the mono-layer observation area. An optical image camera scans whole observation area and gives an absolute quantitative analysis report. Based on such a capillary tip, regular quantitative PCR can be easily upgraded into absolute quantitative PCR.
Replacing the traditional pipette tip with capillary tip, the sample will be dispersed into a standard tube and thermal cycling in traditional qPCR device, just with the utilization of a unique mono-layer imaging process, an absolute quantitative PCR is simply realized.
This invention provides a feasible way to upgrade a regular quantitative PCR into a droplet digital PCR, only adding an extra droplet reader unit. This invention will lower the user's investment and make an effective use of the existing instruments.
The foregoing is considered as illustrative only of the principles of the invention. Further, since numerous modifications and changes will readily occur to those skilled in the art, it is not desired to limit the invention to the exact construction and operation shown and described, and accordingly, all suitable modifications and equivalents may be resorted to, falling within the scope of the invention.
With respect to the above description, it is to be realized that the optimum relationships for the parts of the invention in regard to size, shape, form, materials, function and manner of operation, assembly and use are deemed readily apparent and obvious to those skilled in the art, and all equivalent relationships to those illustrated in the drawings and described in the specification are intended to be encompassed by the present invention.