The present invention relates generally to the field of microfluidics, and more particularly to microfluidic devices for bioassays.
There is a growing interest in conducting drug screens with primary cells derived from human tissues and biofluids to predict patient outcomes. In contrast to immortalized cell lines, primary cells are a scarce resource and yet preclinical studies demand diverse assays probing specific targets, off-targets and cytotoxicity. Therefore there is a need for a technology that can screen drugs with minimal requirements on cell sample and compound volumes. Currently, multiwell plates and pipetting systems are the established methods for drug assays. However, this technology is difficult to scale down to nanoliter volumes due to fluid evaporation and pipetting errors. In recent years, drop-based microfluidics has emerged as a powerful technology to compartmentalize cells in volumes down to picoliters. Despite its great potential, drop-based microfluidics has not been configured to conduct cell based drug assays with the same ease and parallelized fluid handling capability as well plates and pipetting systems.
One embodiment of the present invention provides a microfluidic device having one or more microchannel networks. The microfluidic device includes a substrate and a cover. The substrate has an inlet port, a first microchannel, one or more parking loops, a second microchannel and an outlet port for each microchannel network. The first microchannel is connected to the inlet port, the second microchannel is connected to the outlet port, the one or more parking loops are connected between the first microchannel and the second microchannel. Each parking loop includes a parking loop inlet, a parking loop output, a fluidic trap connected between the parking loop inlet and the parking loop outlet, and a bypass microchannel connected to the parking loop inlet and the parking loop outlet. The cover is attached to a top of the substrate and has an inlet opening and an outlet opening through the cover for each microchannel network. The inlet opening of the cover is disposed above the inlet port in the substrate and the outlet opening is disposed above the outlet port in the substrate.
Another embodiment of the present invention provides a method of making a microfluidic device having one or more microchannel networks. An inlet port, a first microchannel, one or more parking loops, a second microchannel and an outlet port are formed in a substrate for each microchannel network. The first microchannel is connected to the inlet port, the second microchannel is connected to the outlet port, the one or more parking loops are connected between the first microchannel and the second microchannel. Each parking loop includes a parking loop inlet, a parking loop output, a fluidic trap connected between the parking loop inlet and the parking loop outlet, and a bypass microchannel connected to the parking loop inlet and the parking loop outlet. An inlet opening and an outlet opening through a cover layer are formed for each microchannel network. The cover is attached to a top of the substrate. The inlet opening of the cover is disposed above the inlet port in the substrate and the outlet opening is disposed above the outlet port in the substrate for each microchannel network.
Yet another embodiment of the present invention provides a method for trapping a sample within a microfluidic device having one or more microchannel networks. A microfluidic device is provided. The microfluidic device includes a substrate having an inlet port, a first microchannel, one or more parking loops, a second microchannel and an outlet port for each microchannel network. The first microchannel is connected to the inlet port, the second microchannel is connected to the outlet port, the one or more parking loops are connected between the first microchannel and the second microchannel. Each parking loop includes a parking loop inlet, a parking loop output, a fluidic trap connected between the parking loop inlet and the parking loop outlet, and a bypass microchannel connected to the parking loop inlet and the parking loop outlet. The microfluidic device also includes a cover attached to a top of the substrate that has an inlet opening and an outlet opening through the cover for each microchannel network. The inlet opening of the cover is disposed above the inlet port in the substrate and the outlet opening is disposed above the outlet port in the substrate. A first oil is released into the inlet port of the substrate via the inlet opening using a pipette. The sample is released into the inlet port of the substrate via the inlet opening using the pipette. Each fluidic trap is filled with the substance by creating a suction in the outlet port of the substrate via the outlet opening using the pipette. A second oil is released into the inlet port of the substrate via the inlet opening using the pipette. The sample is removed from the microchannel network, except for each fluidic trap, by creating a suction in the outlet port of the substrate via the outlet opening using the pipette.
The present invention is described in detail below with reference to the accompanying drawings.
The above and further advantages of the invention may be better understood by referring to the following description in conjunction with the accompanying drawings, in which:
While the making and using of various embodiments of the present invention are discussed in detail below, it should be appreciated that the present invention provides many applicable inventive concepts that can be embodied in a wide variety of specific contexts. The specific embodiments discussed herein are merely illustrative of specific ways to make and use the invention and do not delimit the scope of the invention.
Various embodiments of the present invention provide a microfluidic device for storing arrays of nanoliter droplets. Although the microfluidic device 100 described herein is well suited for use with automated multichannel pipettes 102 as shown in
For example,
In this work, we used the hydrodynamic traps to trap droplets into an array by using restriction channels. First, we considered the resistance required for confining each droplet in the static traps. There are two flow paths in each trapping unit, which are defined as the upper branch and the lower branch. The ratio of their resistances RL/Ru (lower/upper) was determined by the dimensions of the hydrodynamic trap. In one embodiment, we chose an RL/Ru ratio of about 3 to help prevent undesirable gas bubbles or tiny aqueous droplets from entering and occupying the trap. The trap dimensions were then calculated using the exact analytical solution of Poiseuille flow in a rectangular channel along each path as shown below, where L, h and w are the length, height and width of the channel respectively; μ is the viscosity of oil.
As this RL/Ru and using mineral oil as the carrier fluid, a flow rate of 4 μL/min led to uneven trapping because the front of aqueous plug traveled so quickly that it blocked the lower path before the trap was fully occupied. The trapped droplet could even squeeze through the restriction channel at flow rate of 8 μL/min. Therefore, for these particular device dimensions, we manipulated the fluids for trapping and diluting so that their flow rates were no more than 2 μL/min. The capillary number (Ca) was in a range of 5×10−5-5×10−3 and the Reynolds number (Re) was less than 0.005.
Each embedded microchannel network 104 contains an inlet port or reservoir 106, a first microchannel 108, one or more parking loops 110 (e.g., four parking loops 110a, 110b, 110c and 110d), a second microchannel 112 and an outlet port 114. The first microchannel 108 is connected to the inlet port 106 and the second microchannel 112 is connected to the outlet port 114. The one or more parking loops 110 are connected between the first microchannel 108 and the second microchannel 112. As shown in
As will be explained in more detail below and as shown in
More information about other embodiments are described in U.S. patent application Ser. No. 14/114,304 filed on May 7, 2012 and entitled “Methods and Devices to Control Fluid Volumes, Reagent and Particle Concentration in Arrays of Microfluidic Drops,” which is hereby incorporated by reference in its entirety.
Now referring to
Referring now to
Similarly,
Note that the pipette can be automatically controlled with a processor communicably coupled to the pipette. Moreover, multiple microchannel networks can be filled simultaneously. For example, a first microchannel network can contain the sample having a first concentration, a second microchannel network can contains the sample having a second concentration. Likewise, a first microchannel network can contain a first sample, and a second microchannel network can contain a second sample. The sample may include one or more drops, cells or compositions.
Various embodiments of the present invention were tested as described below. Solutions of red, green, blue, purple and orange dyes (McCormick) were diluted 10× by distilled water and used as reagent plugs. 0.001% (w/w) biocompatible fluorosurfactant, KrytoxFSH-PEG600-KrytoxFSH (RAN Biotechnologies, Inc., MA) in FC-40 (Sigma-Aldrich) was used as carrier fluid. Human leukemia cancer cell line CCRF-CEM was maintained and grown in RPMI-1640 medium containing 10% fetal bovine serum and 0.1% Insulin-Transferrin-Selenium at 37° C. in 5% CO2. Cell density of 3.5×106 cells/mL was used in the experiments. LIVE/DEAD® Cell Imaging Kit (Life technologies) was used to stain the cells for the cell viability test. Preliminary cytotoxicity assays performed with the anticancer drug doxorubicin.
The versatility of the pipette-integrated microfluidic well plate device in accordance with the present invention is illustrated in
To perform cell culture or drug dose response assay in nanoliter-scale, the preservation of drop content over a period of time is very crucial. To avoid the liquid evaporation from the trapped drop over time, oil-filled pipette tips were initially used in both of the ports of the device. However, an ˜30% sample evaporation was observed over 48 hours. Therefore, several strategies for reducing the evaporation during the incubation were explored. An effective method involves the plasma bonding of a second layer of PDMS sheet of 1 mm thickness with 3 mm holes aligned with the inlet and outlet ports of each SDA in the bottom layer. Then, the device is soaked in distilled water for 3 days. After 3 days, the device is used and after finishing the droplet trapping process, all of the 3 mm holes in the second layer are filled with oil to create oil reservoirs above the inlet and outlet of the SDAs. Then, the device was put in water filled omni-plate with a lid and stored in the incubator. Potential loss of reagent fluid due to evaporation in this process was less than 10% during 48 hours. The data is shown in
The quantification of cell distribution in drops was also tested. Different stock cell densities were used to get an idea of cell distribution in each microchannel using pipette-integrated droplet trapping. Two stock solutions of cells (density of 3×106 and 8×106 cells/mL) with a target of 50-250 cells/drop were prepared to get about 200-1000 cells per SDA, which gave a better statistic for future assay analysis. The actual cell distribution in 6-SDAs is shown in
Previously, cell viability in 16 nL drop of a density of 30 cells/drop was tested. The previous data showed greater than 90% cells are viable up to 4.5 hours without any media replacement. A similar cell viability test was performed using the microfluidic device in accordance with the present invention with a 30 nL drop volume. A cell density of 3×106 cells/mL was used to get about 100 cells per SDA to assess the viability of cells during the culture. Cells diluted with only media and without any drugs are used as controls. The cells are staining with live and dead fluorescent dyes prior to the trapping process. Standard epifluorescence microscopy automated stage was used with to image viable cells. A greater than 90% cell viability over 20 hours in 8-SDAs without any media replacement was observed. The results are shown in
In addition, preliminary cytotoxicity assays were performed using the anticancer drug doxorubicin in the microfluidic device in accordance with the present invention. A concentration 0.75×106 cells/mL strained with live/dead cell imaging kit was used. In one SDA controlled cell trapping (without drug) was performed and in another SDA the cells were exposed to 1 μM doxorubicin before trapping and the cell viability over time was observed in both of the SDAs. Preliminary cytotoxicity assays with the anticancer drug doxorubicin showed greater than 99% cell death over 6 hour incubation period (
Further, to determine dose-dependent cytotoxicity of the doxorubicin, leukemia cells were exposed to different concentrations of drug and each concentration treated cells were trapped in a separate SDA of the microfluidic device, and then the device was incubated for 1 hour, after which the cell viability was determined by standard image based epifluorescence microscopy. The IC50 value of the doxorubicin in the leukemia cell lines was found 430 nM (
The foregoing description of the apparatus and methods of the invention in preferred and alternative embodiments and variations, and the foregoing examples of processes for which the invention may be beneficially used, are intended to be illustrative and not for purpose of limitation. The invention is susceptible to still further variations and alternative embodiments within the full scope of the invention, recited in the following claims.
This application claims priority and is: (1) a continuation patent application of U.S. patent application Ser. No. 15/580,439 filed on Dec. 7, 2017 and entitled “Microfluidic Devices and Methods for Bioassays”, now U.S. Pat. No. 10,821,441, which is a National Stage of International Application No. PCT/US2016/036787, filed on Jun. 10, 2016, which claims priority to U.S. Provisional Patent Application Ser. No. 62/173,477, filed on Jun. 10, 2015; and (2) a continuation-in-part application of U.S. patent application Ser. No. 15/475,286 filed on Mar. 31, 2017 and entitled “Methods and Devices to Control Fluid Volumes, Reagent and Particle Concentration in Arrays of Microfluidic Drops”, which is a divisional patent application of U.S. patent application Ser. No. 14/114,304 filed on Oct. 28, 2013, now U.S. Pat. No. 9,637,718, which is a National Stage of International Application No. PCT/US2012/036815, filed on May 7, 2012, which claims priority to: (a) U.S. Provisional Patent Application Ser. No 61/604,785, filed on Feb. 29, 2012; and (b) U.S. Provisional Patent Application Ser. No. 61/483,087, filed on May 6, 2011. The contents of the foregoing applications are incorporated by reference herein in their entirety.
This invention was made with U.S. Government support awarded by NSF grant numbers 1150836, 1355920 and 1445070. The government has certain rights in this invention.
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