MICROWAVE TREATMENT OF SKIN

Information

  • Patent Application
  • 20210283414
  • Publication Number
    20210283414
  • Date Filed
    March 16, 2021
    3 years ago
  • Date Published
    September 16, 2021
    3 years ago
Abstract
The present disclosure provides microwave-based methods for the modulation of certain genes and immunomodulatory factors. The various methods described herein may be used to modulate the expression of one or more genes thought to be beneficial in and/or associated with, the treatment and/or prevention of a disease and/or condition of the skin.
Description
FIELD

The present disclosure provides microwave-based methods for the modulation of certain genes and immunomodulatory factors.


BACKGROUND

In most energy-based treatment systems, such as electromagnetic (EM) ablation systems using microwaves, electromagnetic radiation is delivered from a generator, via a connecting cable, to an energy delivering applicator placed in or onto tissue.


It is possible to treat skin conditions by modulating a patient's immune system. Commonly used methods are based on topical, therapeutic and pharmacological means. Topical immunomodulators comprise both immunostimulatory and immunosuppressive agents and may cause or induce a cytokine secretion.


Imidazoquinolines such as Imiquimod can activate monocytes, macrophages and dendritic cells by binding to Toll-like receptor 7 and 8 (TLR-7, TLR-8) on the cell surface causing NFkB-dependent release of proinflammatory cytokines such as IFNα, TNF-α, and IL-12 and chemokines like IL1, IL6, IL8, and IL10. Imiquimod is used in the treatment of several skin conditions such as warts, basal cell carcinoma (BCC), molluscum contagiosum, melanoma metastases and other pre-cancerous and cancerous lesions such as actinic keratoses, Bowen's disease, cutaneous T-cell lymphoma etc.


Other commonly used topical agents include 5-Fluorouracil (5-FU), Diclofenac gel and Ingenol [1] [2].


Topical corticosteroids are also used as immunosuppressive agents but are known to cause long term suppressive effects on the connective tissue, seen as skin atrophy or resistance to therapy [3] [4].


Therapeutic techniques in treating skin conditions by immunomodulation are less common than topical methods. Photodynamic therapy (PDT) when used in conjunction with topical 5-aminolaevulinic acid (ALA) (also called as ALA-PDT) has shown promising results in the treatment of viral warts, actinic keratosis, superficial basal cell carcinomas and Bowen's disease [5] [1]. Other phototherapeutic modalities such as polarized light therapy (PLT), UV-A and UV-B therapies, low level laser therapy (LLLT), light emitting diode (LED) therapy and infrared (IR) therapy have also shown both inflammatory and anti-inflammatory effects [6].


Gene therapy may be used to achieve targeted gene expression. Using moderate hyperthermia (prolonged exposure to temperature 39° C. to 43° C.), expression of a heterologous gene with a heat shock protein 70 (HSP 70) promoter was shown to be elevated 500-1000 fold along with increased TNF and cytokine signalling [7].


Local hyperthermia induced by far-infrared has been effective in treating HPV related skin conditions such as condyloma acuminatum (also known as anogenital warts) where immunomodulatory effects such as increased levels of CD1a+/CD83+LCs and decreased levels of CCR6 mRNA were observed indicating migrational maturation of Langerhans cells (LCs) [8].


While these topical, therapeutic and pharmacological therapies have shown promising results, they are aggressive, take longer to be effective and often lead to adverse side effects such as significant local inflammation, dermal ulcer, burning sensation, skin rash, flaking, swelling, desquamation, edema, excoriation, exfoliation of skin, pruritus, skin erosion, erythema, breathing difficulties, allergic rhinitis, depigmentation, scarring and high recurrence rates [10] [11] [13].


Corr et al have provided a method for treating solid tumours, comprising a combination of radiofrequency therapy (RF) and immunotherapy where immunotherapy utilises additional immune checkpoint inhibitors, therapeutic vaccines and other drugs that influence immune cell function to enhance anti-cancer activity [15].


Further, combinational treatments such as pharmaceutical composition for hsp90 inhibitors to enhance tumour immunogenicity and chemokine based therapy analysed using differential gene expression have been proposed [16] [17].


The effects of chemotherapy agents such as Gemcitabine on breast cancer have been studied using differential gene expression analysis [18]. Radvanyi et. al. have shown adoptive cell therapy used as an immunotherapy for metastatic melanoma and analysed it using similar approach [19]. Equivalent methods have been applied in understanding proinflammatory gene expression in treating sinus rhythm and atrial fibrillation [20].


All these methods are either pharmacological, posing higher side effects or are used in combination with other immunomodulatory agents. Accordingly, there is a need for a standalone technology to provide a therapeutic level of immunomodulation via the modulation of gene expression. Such a technology may find application in the treatment of a variety of skin diseases/conditions. The present invention addresses that need.


SUMMARY

In a first aspect, there is provided a microwave system for use in a method of modulating the expression of one or more genes.


The disclosure further provides microwave energy for use in a method of modulating the expression of one or more genes.


There is also provided a method of modulating the expression of one or more genes, said method comprising administering microwave energy to a subject in need thereof.


The microwave energy may be supplied by a microwave generator and administered to a subject at a frequency of between about 900 MHz and about 200 GHz. By way of example, the microwave energy may be administered (via a microwave energy generator) at about 915 MHz, at about 2.45 GHz, at about 5.8 GHz, at about 8.0 GHz, or at about 24.125 GHz.


Microwave energy for use in the various methods described herein can comprise an input power of 0.5 W to 40 W. The input power may be applied for a duration of anywhere between about 0.1 s to 20 s. A higher power may be paired with a brief (dose) duration; a lower power may be paired with longer (dose) duration. For example a useful dose of microwave energy may comprise 5 W administered for 3s, 4 W administered for 3s or 3 W administered for 3s.


In some embodiments, the microwave energy may be administered as a series of pulses. A pulsed administration may comprise, for example, the use of one continuous energy discharge “pulse envelope or dose” with a gap between each subsequent “dose”.


The “pulse envelope or dose” may contain or comprise continuous wave or pulse modulated energy e.g. (1 kHz modulation). The microwave energy may be administered as a series of pulses with a time gap of anywhere between about 1 s to about 60 s between each pulse and/or single energy administration. For example a pulsed treatment may be repeated 3 times with a 20 s-time gap in between each single administration of energy.


The microwave treatment maybe comprise microwave energy which is ‘non-ablative’, ‘mildly ablative’, or ablative. A ‘non-ablative’ treatment may comprise only a treatment duration —perhaps, for example a treatment duration of about 1-2s or more. A ‘non-ablative’ treatment might comprise the use of microwave energy at a very low energy level energy, so as to cause no direct tissue or skin damage. Without wishing to be bound by theory, a ‘non-ablative’ treatment may use or exploit non-thermal mechanisms (high electric fields, interruption or modulation of intra-cellular signalling/ion channels).


A ‘mildly ablative’ treatment with microwave energy may comprise a treatment duration of about 2-5s or more. The total amount of energy used may be low so as to cause no direct damage and only a mild to moderate elevation of temperature. A mildly-ablative treatment may produce modest thermal effects (heat shock elevation, mild inflammation etc.) and promote apoptosis within (or of) treated tissue.


An ‘ablative’ treatment comprises the use of a moderate to higher level of microwave energy. The microwave energy may be used for a prolonged duration of around 5-10s or more. This may result in some direct tissue damage, a moderate to high level of temperature elevation (within the treated tissue) and potentially some direct tissue damage/necrosis.


A useful microwave-based treatment may be repeated any required number of times. A treatment may be repeated any suitable or required number of times between about 1 and 6 times for example 2, 3, 4 or 5 times. The interval between each treatment may comprise anywhere between about 1 and about 6 weeks, for example, about 2 weeks, about 3 weeks, about 4 weeks or about 5 weeks.


It should be noted that the specifics of a useful dose may vary depending on the gene(s) to be modulated, the subject (age, weight, condition, history etc.) and the disease or condition to be treated and/or prevented. One of skill will be able to tweak any aspect of the microwave energy dose to fit the clinical circumstances.


The various methods described herein may be applied to subjects in need of treatment, wherein a subject in need of treatment is a human or animal subject suffering from and/or predisposed to a disease or condition of the skin (see below for a list of specific diseases and/or conditions).


Moreover, the described methods may be applied to animals and humans in-situ, in-vivo and ex-vivo.


The methods may be applied to biopsies, samples (provided by or obtained from a subject) and in vitro. Accordingly, the disclosure provides an in vitro method of modulating the expression of one or more genes, said method comprising exposing a tissue to microwave energy.


The disclosure also provides a method of treating or preventing a skin condition by modulating the expression of one or more genes, said method comprising exposing a subject suffering from, or predisposed to, the skin condition, to microwave energy. Such methods may be applied to a diseased or affected tissue in the subject to be treated.


The microwave system may comprise a microwave generator; a controller configured to control the microwave generator to generate microwave energy having a selected operational frequency or range of frequencies; a microwave cable configured to deliver the microwave energy to a microwave antenna extending from or coupled to a distal end of the microwave cable; and the microwave antenna.


The disclosure is based on the finding that when applied to a tissue, microwave energy is able to modulate gene expression. Moreover, the invention is further based on the finding that microwave energy administered at any of the described doses, may be used to modulate gene expression.


In some cases the expression of certain genes is downregulated (inhibited or reduced). That is to say, when compared to the expression of those same genes in a tissue which has not been exposed to microwave energy, there is a lower level of expression of those genes in the exposed tissue.


In other cases the expression of certain genes is upregulated (induced, promoted or stimulated). That is to say, when compared to the expression of those same genes in a tissue which has not been exposed to microwave energy, there is a higher level of expression of those genes in the exposed tissue.


A microwave system of the type described above may be used to expose any given tissue to microwave energy. The tissue may be a biological tissue.


A tissue to be exposed to microwave energy (for the purpose of modulating the expression of one or more genes within that tissue) may comprise diseased tissue. A diseased tissue may be any tissue exhibiting the signs or symptoms characteristic of one or more diseases.


The tissue may comprise skin.


The tissue may also comprise diseased skin. Diseased skin may exhibit the signs or symptoms characteristic of one or more diseases and/or conditions associated with the skin. Skin which may benefit from treatment using microwave energy may include aging skin and/or skin which exhibits solar damage and/or the signs and/or symptoms associated therewith. Microwave energy may also be applied to the skin with one or more scars, erosion and/or lesions.


Without wishing to be bound by theory, it is suggested that following exposure to microwave energy, one or more genes within skin (as defined above) may be modulated such that some aspect of a disease (for example one or more symptoms) or the appearance and/or texture of the skin is improved or resolved. In other words, microwave energy may be used to modulate the expression of one or more genes so as to have a beneficial effect up a symptom or characteristic of the various skin related diseases and/or conditions noted above.


The tissue may belong or be derived, provided or obtained by/from a subject to be treated using a method described herein. Accordingly, the tissue may be an in-situ tissue, in vivo tissue or a biopsy of ex vivo sample.


As stated, a subject to be treated using a method described herein may be suffering from or predisposed/susceptible to, one or more conditions. For example, a subject to be treated may be suffering from or predisposed/susceptible to, one or more diseases of the skin and/or cancer.


Accordingly, and by way of example, a method described herein may be applied to the skin of a subject. The subject may be suffering from one or more diseases of the skin.


The various methods described herein may be applied so as to modulate the expression of one or more genes thought to be beneficial in the treatment and/or prevention of a disease and/or condition of the skin—including any of the specific diseases and/or conditions described herein.


A subject to be treated may be suffering from one or more diseases of the skin, including, but not limited to warts, eczema, psoriasis, acne, cherry angioma, hidradenitis suppurativa, rosacea, ichthyosis, keloid scars, seborrheic dermatitis, seborrheic keratosis, seborrheic hyperplasia, Sebaceous hyperplasia, basal cell carcinoma, actinic keratosis, syringoma, squamous cell carcinoma, nevus, lentigo maligna, Melasma, melanoma, milia, molluscum contagiosum, cervical intraepithelial neoplasia, vaginal intraepithelial neoplasia, vulvar intraepithelial neoplasia, Bowen's disease and/or erythroplasia of queyrat. A method of this disclosure may be applied to the treatment or prevention of any of these diseases.


The methods of this disclosure may also be applied to the treatment of diseases or conditions such as gastric epithelial dysplasia, cardiovascular lesions, conditions involving oral cavity such as epithelial dysplasia, leukoplakia, hairy leukoplakia, erythroplakia, erythroleukoplakia, lichen planus, xerostomia, mucositis, pyogenic granuloma, angioma, nicotinic stomatitis, actinic cheilitis, keratoacantoma, hyperkeratosis, candidosis, erythema migrans and/or canker sores.


Any modulation of gene expression may be determined by rRNA (ribosomal RNA), tRNA (transfer RNA), and ncRNAs (noncoding RNA) or mRNA (messenger RNA) transcript analysis. An analysis of this type may be described as generating a “transcriptome”. By of example, the transcriptome of a tissue exposed to microwave energy (a test transcriptome) may be compared to the transcriptome of a tissue which has not been exposed to microwave energy (a control transcriptome). Any effect of microwave energy on a level of gene expression will manifest as a difference in the level of expression between the test and the control transcriptomes. A transcriptome may be generated using any suitable technique.


Suitable techniques include, but are not limited to real-time quantitative PCR (qPCR), Microarrays or RNA-Seq (RNA-sequencing) A transcriptome analysis may be generated by earlier techniques for example ESTs (expressed sequence tags), northern blotting, nylon membrane arrays and SAGE (serial analysis of gene expression).


Without wishing to be bound by theory, the application of microwave energy to a tissue may induce hyperthermia within said tissue. That hyperthermia may be referred to as a “local hyperthermia” or “regional hyperthermia”. The application of microwave energy may, for example, release beneficial intracellular and/or extracellular HSPs (heat shock proteins), and also may induce non-thermal effects such as but not limited to, dielectrophoretic effects, electrophoresis effects, electroosmosis effects, electroporation effects, high frequency (GHz) mechanical resonance effects (relating to fracturing viral particles), stress causing enhancement of protein reaction rates, optimised immunomodulatory signalling, improved enzyme stability, improved cellular uptake and cellular function of cell, homogeneous orientation of large molecules. The sum total of all of these effects may be the modulation (i.e. the up- or down-regulation) of one or more of the genes described herein.


By way of example, the methods and uses described herein may be applied to the modulation of the expression of one or more of the genes.


The gene or genes to be modulated may be directly or indirectly associated with a disease or condition affecting the skin. For example, one or more of the genes may be involved or linked with/to one or more pathways or mechanisms associated with a disease or condition of the skin.


The gene or genes to be modulated may encode or provide factors associated with the host immune system. For example the gene or genes to be modulated may encode or provide factors which are immunomodulatory.


Additionally or alternatively, the gene or genes to be modulated may be classified as “cancer” or “oncogenic” genes—that is to say, their expression has been associated with one or more types of cancer.


In view of the above, one of skill will appreciate that where a disease or condition of the skin is known to be associated with a level of expression of a particular gene, microwave energy may represent a novel route to the treatment and/or prevention of that disease or condition. By way of example, microwave energy may be used to restore the aberrant expression of the one or more genes that is known to be associated with the disease or condition.


Where the downregulation or inhibition of a particular gene or genes is associated with a disease or condition of the skin (for example the downregulation of a particular gene or genes causes or contributes to a particular skin disease or condition), microwave energy may be used to upregulate those genes, restoring the level of expression, activity and/or function that is required for healthy skin.


Alternatively, where the upregulation of a particular gene or genes is associated with a disease or condition of the skin (for example the upregulation of a particular gene or genes causes or contributes to a particular skin disease or condition), microwave energy may be used to downregulate or suppress those genes so that an appropriate or normal level of expression is restored.


It should also be noted that where the upregulation of the expression of one or more gene(s) is associated with the treatment and/or prevention of a particular skin disease or condition, microwave energy may be used to affect the upregulation of those gene(s). Such microwave induced upregulation would be recognised as helping to treat and/or prevent the diseases and/or condition of the skin.


Alternatively, where downregulation (or inhibition) of the expression of one or more gene(s) is associated with the treatment and/or prevention of a particular skin disease or condition, microwave energy may be used to affect the downregulation and/or inhibition of those gene(s). Such microwave induced gene inhibition would be recognised ad helping to treat and/or prevent the diseases and/or condition of the skin.


Genes which can be modulated by the methods described herein (i.e. by the application of microwave energy) include one or more of those listed in Table 1. Specifically, microwave energy may be used to upregulate the expression of one or more of the genes listed in Table











TABLE 1





Gene
Official full name
Immunomodulatory pathway participation







CFH
complement factor H
Complement System,




Host-pathogen Interaction




Innate Immune System


MSR1
macrophage scavenger
Phagocytosis and Degradation



receptor 1



CXCL12
chemokine (C-X-C motif) ligand
Chemokine Signaling



12
Cytokine Signaling




Lymphocyte Trafficking




NF-kB Signaling


HLA-DPB1
major histocompatibility
Adaptive Immune System



complex, class II, DP beta 1
Cell Adhesion




Cytokine Signaling




Host-pathogen Interaction




Lymphocyte Activation




MHC Class II Antigen Presentation




Phagocytosis and Degradation




T Cell Receptor Signaling




Type II Interferon Signaling


MRC1
mannose receptor, C type 1
Adaptive Immune System




Host-pathogen Interaction




MHC Class I Antigen Presentation




Phagocytosis and Degradation


FCER1A
Fc fragment of IgE, high affinity
Innate Immune System



I, receptor for; alpha




polypeptide



C3
complement component 3
Adaptive Immune System




Complement System




Host-pathogen Interaction




Innate Immune System




Phagocytosis and Degradation


VCAM1
vascular cell adhesion molecule
Adaptive Immune System



1
Cell Adhesion




Cytokine Signaling




Host-pathogen Interaction




Lymphocyte Activation




Lymphocyte Trafficking




NF-kB Signaling




TNF Family Signaling




Type II Interferon Signaling


CFD
complement factor D (adipsin)
Complement System




Hemostasis




Host-pathogen Interaction




Innate Immune System


CCL13
chemokine (C-C motif) ligand
Chemokine Signaling



13
Cytokine Signaling




NF-kB Signaling


LGALS3
lectin, galactoside-binding,




soluble, 3



CDH5
cadherin 5, type 2 (vascular
Cell Adhesion



endothelium)
Lymphocyte Trafficking


KIT
v-kit Hardy-Zuckerman 4 feline
Cytokine Signaling



sarcoma viral oncogene
Lymphocyte Activation



homolog



CD209
CD209 molecule
Adaptive Immune System




Host-pathogen Interaction




Innate Immune System




Lymphocyte Activation




Phagocytosis and Degradation


LILRB4
leukocyte immunoglobulin-like
Adaptive Immune System



receptor, subfamily B (with TM




and ITIM domains), member 4



CLEC5A
C-type lectin domain family 5,
Innate Immune System



member A



HLA-DRA
major histocompatibility
Adaptive Immune System



complex, class II, DR alpha
Cell Adhesion




Cytokine Signaling




Host-pathogen Interaction




Lymphocyte Activation




MHC Class II Antigen Presentation




Phagocytosis and Degradation




T Cell Receptor Signaling




Type II Interferon Signaling


SERPING1
serpin peptidase inhibitor, clade
Complement System



G (C1 inhibitor), member 1
Hemostasis




Host-pathogen Interaction




Innate Immune System


HLA-DPA1
major histocompatibility
Adaptive Immune System



complex, class II, DP alpha 1
Cell Adhesion




Cytokine Signaling




Host-pathogen Interaction




Lymphocyte Activation




MHC Class II Antigen Presentation




Phagocytosis and Degradation




T Cell Receptor Signaling




Type II Interferon Signaling


CD4
CD4 molecule
Adaptive Immune System




Cell Adhesion




Cytokine Signaling




Innate Immune System




Lymphocyte Activation




T Cell Receptor Signaling


FCGRT
Fc fragment of IgG, receptor,
Hemostasis



transporter, alpha



NT5E
5′-nucleotidase, ecto (CD73)
Immunometabolism


C2
complement component 2
Complement System




Host-pathogen Interaction




Innate Immune System


CSF1
colony stimulating factor 1
Cytokine Signaling



(macrophage)
TNF Family Signaling


HAVCR2
hepatitis A virus cellular
Cytokine Signaling



receptor 2
Lymphocyte Activation


TNFSF12
tumor necrosis factor (ligand)
Cytokine Signaling



superfamily, member 12



LAIR1
leukocyte-associated
Adaptive Immune System



immunoglobulin-like receptor 1
Innate Immune System


B2M
beta-2-microglobulin
Adaptive Immune System




Cytokine Signaling




Innate Immune System




Lymphocyte Activation




MHC Class I Antigen Presentation




Type II Interferon Signaling


CMKLR1
chemokine-like receptor 1
Immunometabolism


PDCD1LG2
programmed cell death 1 ligand
Adaptive Immune System



2
Cell Adhesion




Lymphocyte Activation


CD45R0
protein tyrosine phosphatase,
Adaptive Immune System



receptor type, C
Cell Adhesion




Innate Immune System




Lymphocyte Activation




T Cell Receptor Signaling


CD34
CD34 molecule
Cell Adhesion


XCR1
chemokine (C motif) receptor 1
Chemokine Signaling




Cytokine Signaling


CYBB
cytochrome b-245, beta
Adaptive Immune System



polypeptide
Host-pathogen Interaction




Innate Immune System




Lymphocyte Trafficking




MHC Class I Antigen Presentation




NLR signaling




Oxidative Stress




Phagocytosis and Degradation


ITGAM
integrin, alpha M (complement
Cell Adhesion



component 3 receptor 3
Complement System



subunit)
Cytokine Signaling




Hemostasis




Host-pathogen Interaction




Innate Immune System




Lymphocyte Trafficking




Phagocytosis and Degradation




TLR Signaling


TGFBR2
receptor II (70/80kDa)
Cytokine Signaling




Host-pathogen Interaction




transforming growth factor, beta




Lymphocyte Activation




TGF-b Signaling




Th17 Differentiation




Treg Differentiation


HLA-DMB
major histocompatibility
Adaptive Immune System



complex, class II, DM beta
Cell Adhesion




Host-pathogen Interaction




Lymphocyte Activation




MHC Class II Antigen Presentation




Phagocytosis and Degradation


CTSS
cathepsin S
Adaptive Immune System




Apoptosis




Host-pathogen Interaction




Innate Immune System




MHC Class I Antigen Presentation




MHC Class II Antigen Presentation




Phagocytosis and Degradation




TLR Signaling


IKZF2
IKAROS family zinc finger 2
Transcriptional Regulation



(Helios)



CD59
CD59 molecule, complement
Complement System



regulatory protein
Innate Immune System




Lymphocyte Activation


TNFRSF11A
tumor necrosis factor receptor
Cytokine Signaling



superfamily, member 11a,
NF-kB Signaling



NFKB activator



TNFSF13B
tumor necrosis factor (ligand)
Cytokine Signaling



superfamily, member 13b
Lymphocyte Activation




NF-kB Signaling


TLR3
toll-like receptor 3
Host-pathogen Interaction




Innate Immune System




TLR Signaling


STAT5A
signal transducer and activator
Cytokine Signaling



of transcription 5A
Host-pathogen Interaction




Th2 Differentiation




Transcriptional Regulation


IFITM1
interferon induced
Adaptive Immune System



transmembrane protein 1 (9-27)
B cell Receptor Signaling




Cytokine Signaling




Type I Interferon Signaling


NFKB1
nuclear factor of kappa light
Adaptive Immune System



polypeptide gene enhancer in
Apoptosis



B-cells 1
B cell Receptor Signaling




Chemokine Signaling




Cytokine Signaling




Host-pathogen Interaction




Inflammasomes




Innate Immune System




NF-kB Signaling




NLR signaling




Oxidative Stress




T Cell Receptor Signaling




Thi Differentiation




TNF Family Signaling




TLR Signaling




Transcriptional Regulation


ITGB2
integrin, beta 2 (complement
Adaptive Immune System



component 3 receptor 3 and 4
Cell Adhesion



subunit)
Complement System




Cytokine Signaling




Hemostasis




Host-pathogen Interaction




Innate Immune System




Lymphocyte Activation




Lymphocyte Trafficking




Phagocytosis and Degradation




TLR Signaling


C1S
complement component 1, s
Complement System



subcomponent
Host-pathogen Interaction




Innate Immune System


SDHA
succinate dehydrogenase
Cytokine Signaling



complex, subunit A,




flavoprotein (Fp)



ETS1
v-ets erythroblastosis virus E26
Host-pathogen Interaction



oncogene homolog 1 (avian)
Oxidative Stress


CASP1
caspase 1, apoptosis-related
Transcriptional Regulation



cysteine peptidase (interleukin
Cytokine Signaling



1, beta, convertase)
Host-pathogen Interaction




Inflammasomes




Innate Immune System




NLR signaling


C1R
complement component 1, r
Complement System



subcomponent
Host-pathogen Interaction




Innate Immune System




Phagocytosis and Degradation


HLA-DMA
major histocompatibility
Cell Adhesion



complex, class II, DM alpha
Host-pathogen Interaction




MHC Class II Antigen Presentation




Phagocytosis and Degradation


CD74
CD74 molecule, major
Adaptive Immune System



histocompatibility complex,
Hemostasis



class II invariant chain
Host-pathogen Interaction




Lymphocyte Activation




MHC Class II Antigen Presentation


MAPK1
mitogen-activated protein
Apoptosis



kinase 1
Autophagy




B cell Receptor Signaling




Chemokine Signaling




Cytokine Signaling




Hemostasis




Host-pathogen Interaction




Innate Immune System




Lymphocyte Activation




NLR signaling




T Cell Receptor Signaling




TGF-b Signaling




TNF Family Signaling




TLR Signaling


IL6ST
interleukin 6 signal transducer
Cytokine Signaling



(gp130, oncostatin M receptor)
Lymphocyte Activation




Th17 Differentiation









The methods and uses described herein may also be applied to modulating the expression of one or more of the genes listed in Table 2. Microwave energy may be used to downregulate the expression of one or more of the genes listed in Table 2.











!TABLE 2





Gene
Official full name
Immunomodulatory pathway participation







IL8
interleukin 8
Chemokine Signaling




Cytokine Signaling




Host-pathogen Interaction




NF-kB Signaling




NLR signaling




TLR Signaling


IL1B
interleukin 1, beta
Cytokine Signaling




Host-pathogen Interaction




Innate Immune System




Lymphocyte Activation




NF-kB Signaling




NLR signaling




Oxidative Stress




Th17 Differentiation




TNF Family Signaling




TLR Signaling


IL6
interleukin 6 (interferon, beta 2)
Cytokine Signaling




Host-pathogen Interaction




Lymphocyte Activation




NLR signaling




Oxidative Stress




Th17 Differentiation




Th2 Differentiation




TNF Family Signaling




TLR Signaling


CD79A
CD79a molecule, immunoglobulin-
Adaptive Immune System



associated alpha
B cell Receptor Signaling




Lymphocyte Activation


SOCS3
suppressor of cytokine signaling 3
Adaptive Immune System




Cytokine Signaling




Host-pathogen Interaction




MHC Class I Antigen Presentation




TNF Family Signaling




Type I Interferon Signaling




Type II Interferon Signaling


CXCL13
chemokine (C-X-C motif) ligand 13
Chemokine Signaling




Cytokine Signaling


CXCL1
chemokine (C-X-C motif) ligand 1
Chemokine Signaling



(melanoma growth stimulating
Cytokine Signaling



activity, alpha)
Host-pathogen Interaction




Innate Immune System




NLR signaling




TNF Family Signaling


PTGS2
prostaglandin-endoperoxide
Cytokine Signaling



synthase 2 (prostaglandin G/H
Host-pathogen Interaction



synthase and cyclooxygenase)
Immunometabolism




NF-kB Signaling




Oxidative Stress




TNF Family Signaling


TNFRSF17
tumor necrosis factor receptor
Cytokine Signaling



superfamily, member 17



EGR1
early growth response 1
Cytokine Signaling




Host-pathogen Interaction




Lymphocyte Activation




Transcriptional Regulation




Type I Interferon Signaling


CXCL2
chemokine (C-X-C motif) ligand 2
Chemokine Signaling




Cytokine Signaling




Host-pathogen Interaction




NF-kB Signaling




NLR signaling




TNF Family Signaling


CCL20
chemokine (C-C motif) ligand 20
Chemokine Signaling




Cytokine Signaling




TNF Family Signaling


IL28A
interleukin 28A (interferon, lambda
Cytokine Signaling



2)
Lymphocyte Activation


CD19
CD19 molecule
Adaptive Immune System




B cell Receptor Signaling




Complement System




Host-pathogen Interaction




Innate Immune System


LIF
leukemia inhibitory factor
Cytokine Signaling



(cholinergic differentiation factor)
TNF Family Signaling


IL20
interleukin 20
Cytokine Signaling


XBP1
X-box binding protein 1
Host-pathogen Interaction




Lymphocyte Activation




Oxidative Stress




Transcriptional Regulation


BCL3
B-cell CLL/lymphoma 3
Lymphocyte Activation




TNF Family Signaling




Transcriptional Regulation


CXCR4
chemokine (C-X-C motif) receptor
Chemokine Signaling



4
Cytokine Signaling




Lymphocyte Trafficking


MIF
macrophage migration inhibitory
Cytokine Signaling



factor (glycosylation-inhibiting
Hemostasis



factor)
Innate Immune System




Lymphocyte Activation


CD79B
CD79b molecule, immunoglobulin-
Adaptive Immune System



associated beta
B cell Receptor Signaling




Lymphocyte Activation


KLRG2
killer cell lectin-like receptor
Lymphocyte Activation



subfamily G, member 2



LTB4R
leukotriene B4 receptor
Immunometabolism


TNFRSF13C
tumor necrosis factor receptor
Cytokine Signaling



superfamily, member 13C
Host-pathogen Interaction




Lymphocyte Activation




NF-kB Signaling


IRF3
interferon regulatory factor 3
Cytokine Signaling




Hemostasis




Host-pathogen Interaction




Innate Immune System




NLR signaling




TLR Signaling




Transcriptional Regulation




Type I Interferon Signaling




Type II Interferon Signaling


TNFAIP3
tumor necrosis factor, alpha-
Host-pathogen Interaction



induced protein 3
Innate Immune System




Lymphocyte Activation




NF-kB Signaling




NLR signaling




Oxidative Stress




TNF Family Signaling


BCL2L11
BCL2-like 11 (apoptosis facilitator)
Apoptosis


MAPKAPK2
mitogen-activated protein kinase-
Cytokine Signaling



activated protein kinase 2
Immunometabolism




Innate Immune System




TLR Signaling


HLA-C
major histocompatibility complex,
Adaptive Immune System



class I, C
Cell Adhesion




Cytokine Signaling




Host-pathogen Interaction




Innate Immune System




Lymphocyte Activation




MHC Class I Antigen Presentation




Phagocytosis and Degradation




Type I Interferon Signaling




Type II Interferon Signaling


IL1RAP
interleukin 1 receptor accessory
Cytokine Signaling



protein
Th17 Differentiation


TRAF3
TNF receptor-associated factor 3
Cytokine Signaling




Host-pathogen Interaction




Innate Immune System




NF-kB Signaling




NLR signaling




TNF Family Signaling




TLR Signaling


CASP2
caspase 2, apoptosis-related
Apoptosis



cysteine peptidase
Innate Immune System




NLR signaling


MCL1
myeloid cell leukemia sequence 1
Apoptosis



(BCL2-related)
Cytokine Signaling




Oxidative Stress









It should be noted that the genes listed in Tables 1 and 2 may be associated with aspects of the host immune system. For example, one or more of the genes listed in these tables may encode factors which are immunomodulatory—that is they modulate one or more aspects of the innate or adaptive host immune response.


Based on the above and by way of a non-limiting example, the disclosure provides a method of downregulating the expression of the genes which encode IL8 (interleukin 8) and/or IL1B (interleukin 1, beta) and/or IL6 (interleukin 6), said method comprising administering a subject in need thereof, a quantity or amount of microwave energy as described herein. In one teaching, the subject may be suffering from a disease or condition caused or contributed to by the expression, for example aberrant expression of IL8 and/or IL1B and/or IL6.


The methods and uses described herein may additionally (or alternatively) be applied to modulating the expression of one or more of the genes listed in Table 3. Microwave energy may be used to upregulate the expression of one or more of the genes listed in Table 3.











TABLE 3





Gene
Official full name
Participating pathways







THBS4
thrombospondin 4
PI3K


SFRP4
secreted frizzled-related protein 4
Wnt


RELN
reelin
PI3K


ETV1
ets variant 1
TXmisReg


TMPRSS2
transmembrane protease, serine 2
TXmisReg


MMP7
matrix metallopeptidase 7 (matrilysin, uterine)
Wnt


PPARGC1A
peroxisome proliferator-activated receptor
ChromMod



gamma, coactivator 1 alpha



PLCB4
phospholipase C, beta 4
Wnt


PRKAR2B
protein kinase, cAMP-dependent, regulatory, type
CC+Apop



II, beta



AR
androgen receptor
Driver Gene


FGF2
fibroblast growth factor 2 (basic)
MAPK, PI3K, RAS


GHR
growth hormone receptor
JAK-STAT, PI3K


PPARG
peroxisome proliferator-activated receptor gamma
TXmisReg


PLA2G4A
phospholipase A2, group IVA (cytosolic, calcium-
MAPK, RAS



dependent)



BCL2
B-cell CLL/lymphoma 2
Driver Gene, PI3K, CC+Apop


KIT
v-kit Hardy-Zuckerman 4 feline sarcoma viral
Driver Gene, PI3K, RAS



oncogene homolog



TGFB2
transforming growth factor, beta 2
TGF-B, MAPK, CC+Apop


NTRK2
neurotrophic tyrosine kinase, receptor, type 2
MAPK


ID4
inhibitor of DNA binding 4, dominant negative
TGF-B



helix-loop-helix protein



PDGFD
platelet derived growth factor D
PI3K, RAS


VEGFC
vascular endothelial growth factor C
PI3K, RAS


KITLG
KIT ligand
PI3K, RAS


NGFR
nerve growth factor receptor
PI3K, RAS, TXmisReg


HDAC4
histone deacetylase 4
ChromMod


TSPAN7
tetraspanin 7
TXmisReg


LIFR
leukemia inhibitory factor receptor alpha
JAK-STAT


USP39
ubiquitin specific peptidase 39
HK


LIG4
ligase IV, DNA, ATP-dependent
DNARepair


FGFR1
fibroblast growth factor receptor 1
MAPK, PI3K, RAS


B2M
beta-2-microglobulin
Driver Gene


ID2
inhibitor of DNA binding 2, dominant negative
TXmisReg, TGF-B



helix-loop-helix protein



DDIT3
DNA-damage-inducible transcript 3
TXmisReg, MAPK


GPC4
glypican 4
Wnt


TGFBR2
transforming growth factor, beta receptor II
TXmisReg, TGF-B, MAPK



(70/80kDa)



AKT3
v-akt murine thymoma viral oncogene homolog 3
MAPK, JAK-STAT, PI3K, RAS,




CC+Apop


ALKBH3
alkB, alkylation repair homolog 3 (E. coli)
DNARepair


NOL7
nucleolar protein 7, 27kDa
HK


MAPK1
mitogen-activated protein kinase 1
TGF-B, MAPK, PI3K, RAS


PRKACB
protein kinase, cAMP-dependent, catalytic, beta
Wnt, HH, MAPK, RAS,




CC+Apop


MAPK9
mitogen-activated protein kinase 9
MAPK, RAS


SKP1
S-phase kinase-associated protein 1
Wnt, TGF-B, CC+Apop


NF1
neurofibromin 1
Driver Gene, MAPK, RAS


SF3B1
splicing factor 3b, subunit 1, 155kDa
Driver Gene


RPS27A
ribosomal protein 527a
DNARepair









The methods and uses described herein may additionally (or alternatively) be applied to modulating the expression of one or more of the genes listed in Table 4. Microwave energy may be used to downregulate the expression of one or more of the genes listed in Table 4.











TABLE 4





Gene
Official full name
Participating pathways







OSM
oncostatin M
JAK-STAT, PI3K


IL1B
interleukin 1, beta
MAPK, CC+Apop


GNG4
guanine nucleotide binding protein (G protein),
PI3K, RAS



gamma 4



FOS
FBJ murine osteosarcoma viral oncogene
MAPK



homolog



IL24
interleukin 24
JAK-STAT


IL6
interleukin 6 (interferon, beta 2)
TXmisReg, JAK-STAT, PI3K


SOCS3
suppressor of cytokine signaling 3
JAK-STAT


NR4A1
nuclear receptor subfamily 4, group A, member 1
MAPK, PI3K


CD19
CD19 molecule
PI3K


PAX5
paired box 5
Driver Gene, TXmisReg


DUSP2
dual specificity phosphatase 2
MAPK


LIF
leukemia inhibitory factor
JAK-STAT


BCL2A1
BCL2-related protein A1
TXmisReg


MYC
v-myc avian myelocytomatosis viral oncogene
Wnt, TXmisReg, TGF-B,



homolog
MAPK, JAK-STAT, PI3K,




CC+Apop


EPHA2
EPH receptor A2
PI3K, RAS


FOSL1
FOS-like antigen 1
Wnt


CACNB3
calcium channel, voltage-dependent, beta 3
MAPK



subunit



ETS2
v-ets avian erythroblastosis virus E26 oncogene
RAS



homolog 2



HSPB1
heat shock 27kDa protein 1
MAPK


CDC7
cell division cycle 7
CC+Apop


COL27A1
collagen, type XXVII, alpha 1
PI3K


PIM1
pim-1 oncogene
JAK-STAT


ID1
inhibitor of DNA binding 1, dominant negative
TGF-B



helix-loop-helix protein



ALKBH2
alkB, alkylation repair homolog 2 (E. coli)
DNARepair


TNFAIP3
tumor necrosis factor, alpha-induced protein 3
Driver Gene


CDKN2D
cyclin-dependent kinase inhibitor 2D (p19, inhibits
CC+Apop



CDK4)



MCM7
minichromosome maintenance complex
CC+Apop



component 7



VHL
von Hippel-Lindau tumor suppressor, E3 ubiquitin
Driver Gene



protein ligase



KRAS
Kirsten rat sarcoma viral oncogene homolog
Driver Gene, MAPK, PI3K,




RAS


PIK3R2
phosphoinositide-3-kinase, regulatory subunit 2
JAK-STAT, PI3K, RAS,



(beta)
CC+Apop


HSP90B1
heat shock protein 90kDa beta (Grp94), member 1
MAPK


CIC
capicua transcriptional repressor
Driver Gene


PML
promyelocytic leukemia
TXmisReg


MMP3
matrix metallopeptidase 3 (stromelysin 1,
TXmisReg



progelatinase)



TNFRSF10C
tumor necrosis factor receptor superfamily,
CC+Apop



member 10c, decoy without an intracellular




domain



IL8
interleukin 8
TXmisReg









It should be noted that the genes listed in Tables 3 and 4 may be associated with the development, metastasis and/or progression of one or more types of cell proliferation and/or differentiation disorder, such as, for example, cancer. For example the expression, over expression or under expression of one or more of the genes listed in these tables may be classified as anti- or pro-cancer and may be linked (directly or indirectly) to disease progression. One of skill will appreciate that by appropriately modulating the expression of one or more of these genes, it may be possible to treat or prevent a cancer, including, for example a skin cancer.


For completeness, there follows a description of some of those pathways linked to one or more of the microwave modulated gene(s) described herein. One of skill may refer to these pathways as “key cancer pathways”.


Notch: Intercellular signaling mechanism essential for proper embryonic development. The Notch proteins are single-pass receptors and are transported to the plasma membrane as cleaved. Notch intracellular domain (NICD) translocates to the nucleus, where it forms a complex with the DNA binding protein CSL, displacing a histone deacetylase (HDAc)-co-repressor (CoR) complex from CSL. Notch signaling pathway can either act oncogenic or in a tumor-suppressive manner


APC (Wnt): Wnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, in many different species and organs.


HedgeHog: The Hedgehog (Hh) family of secreted signaling proteins plays a crucial role in development, regulating morphogenesis of a variety of tissues and organs. Hh signaling is also involved in control of stem cell proliferation in adult tissues and aberrant activation of the Hh pathway has been linked to multiple types of human cancer. Members of the Hh family bind to patched (ptc), thus releasing smoothened (smo) to transduce a signal.


Chromatin Modification: Members of this family of genes are involved or regulate processes associated with the alteration of DNA, protein, or sometimes RNA, in chromatin, which may result in changing the chromatin structure.


Transcriptional Regulation: A collection of pathways known to be transcriptionally misregulated in a variety of cancers.


DNA Damage: Control DNA repair is a multi-enzyme, multi-pathway system required to ensure the integrity of the cellular genome. DNA damage can arise spontaneously in the cellular milieu through chemical alteration of base nucleotides or as a consequence of errors during DNA replication.


TGF-B: The transforming growth factor-beta (TGF-beta) family members, which include TGF-betas, activins and bone morphogenetic proteins (BMPs), are structurally related secreted cytokines. A wide spectrum of cellular functions such as proliferation, apoptosis, differentiation and migration are regulated by TGF-beta family members.


MAPK: The mitogen-activated protein kinase (MAPK) cascade is a highly conserved module that is involved in various cellular functions, including cell proliferation, differentiation and migration. Abnormal MAPK signaling may lead to increased or uncontrolled cell proliferation and resistance to apoptosis.


JAK/STAT: The Janus kinase/signal transducers and activators of transcription (JAK/STAT) pathway is a pleiotropic cascade used to transduce a multitude of signals for development and homeostasis in animals. It is the principal signaling mechanism for a wide array of cytokines and growth factors which leads to activation of additional transcription factors.


PI3K: The phosphatidylinositol 3′-kinase(PI3K)-Akt signaling pathway regulates fundamental cellular functions such as transcription, translation, proliferation, growth, apoptosis, protein synthesis, metabolism cell cycle and survival.


RAS: The Ras proteins are GTPases that function as molecular switches for signaling pathways regulating cell proliferation, survival, growth, migration, differentiation or cytoskeletal dynamism.) Cell Cycle and Apoptosis: Mitotic cell cycle progression is accomplished through a reproducible sequence of events. Apoptosis is a genetically controlled mechanisms of cell death involved in the regulation of tissue homeostasis. The 2 major pathways of apoptosis are the extrinsic and the intrinsic both of which are found in the cytoplasm.





DETAILED DESCRIPTION

The present invention will now be described with reference to the following figures which show:



FIG. 1: a schematic illustration of a microwave treatment system, in accordance with embodiments.



FIG. 2: PCA of significantly altered genes between microwave treated and untreated skin assessed on Immunology panel.



FIG. 3: a heatmap showing the significantly altered genes between microwave treated and untreated skin assessed on Immunology panel.



FIG. 4: Example of gene count in normal, microwave treated and diseased skin tissue on Immunology panel.



FIG. 5: PCA of significantly altered genes between microwave treated and untreated skin assessed on PanCancer panel.



FIG. 6: a heatmap of significantly altered genes between microwave treated and untreated skin assessed on PanCancer panel.



FIG. 7: Example of gene count in normal, microwave treated and diseased skin tissue on PanCancer panel.





MICROWAVE ENERGY SYSTEM

A microwave radiation delivery system 11, in accordance with embodiments, for treating a biological tissue, is illustrated in FIG. 1. The system comprises a microwave generator 12 for generating microwave radiation, a flexible or rigid interconnecting cable 13 and a microwave applicator assembly (also called microwave antenna) 14 for delivering microwave radiation to a biological tissue. Other variations of this arrangement are possible including integrated versions. The microwave radiation delivery system may further comprise a controller (not shown) which is configured to select an operational frequency or range of frequencies to be supplied by the generator. A frequency of the microwave radiation supplied by the microwave generator 12 may be between 900 MHz and 30 GHz, for example about 915 MHz, about 2.45 GHz, about 5.8 GHz, about 8.0 GHz, or about 24.125 GHz. In some embodiments, the microwave radiation supplied is pulsed meaning that the energy is delivered in precise and brief doses lasting a number of seconds.


Methods

A microwave system comprising a microwave generator; a controller configured to control the microwave generator to generate microwave energy having a selected operational frequency or range of frequencies; a microwave cable configured to deliver the microwave energy to a microwave antenna extending from or coupled to a distal end of the microwave cable; and a microwave antenna was used to apply microwave energy to skin tissue for example diseased skin tissue. This created thermal and non-thermal effects within the tissue and biopsies were taken for transcriptome studies.


The analysis of mRNA transcripts was performed using NanoString (NanoString Technologies Inc., Seattle, Wash. 98109 USA) nCounter gene expression system using, Immune pathway (nCounter Human Immunology V2 Panel, catalogue number: XT-CSO-HIM2-12) and Cancer pathway (nCounter PanCancer Pathways, catalogue number: XT-CSO-PATH1-12) to comprehend changes in the transcripts of number of genes (579 human genes in the Immunology V2 panel assay and 730 human genes in the PanCancer pathway assay) [20].


Gene expression analysis was performed using nSolver 4.0 (NanoString Technologies Inc., Seattle, Wash. 98109 USA) and open source Bioconductor DESeq2 in R studio (version 3.5.3). The results are presented in Tables 1-4 above and also 5-8 below.


Treated skin refers to microwave treated skin. Terms untreated skin/control/diseased skin are interchangeable.









TABLE 5







those genes found to be significantly


upregulated between microwave treated and


untreated skin assessed on Immunology panel.














Base
log2 Fold





Gene
Mean
Change
p-value
p-adj

















CFH
1026.38
1.49
0.0000
0.0000



MSR1
157.37
1.44
0.0001
0.0015



CXCL12
2043.39
1.24
0.0000
0.0000



HLA-DPB1
2556.70
1.21
0.0000
0.0000



MRC1
296.88
1.17
0.0000
0.0002



FCER1A
370.56
1.12
0.0003
0.0053



C3
510.64
1.10
0.0000
0.0008



VCAM1
117.58
1.00
0.0000
0.0000



CFD
577.43
0.96
0.0012
0.0132



CCL13
291.62
0.87
0.0018
0.0184



LGALS3
2115.07
0.85
0.0001
0.0019



CDH5
139.47
0.83
0.0004
0.0062



KIT
129.87
0.82
0.0005
0.0072



CD209
41.49
0.82
0.0028
0.0247



LILRB4
65.57
0.79
0.0036
0.0298



CLEC5A
35.60
0.76
0.0045
0.0339



HLA-DRA
6024.43
0.76
0.0001
0.0024



SERPING1
1521.07
0.75
0.0000
0.0003



HLA-DPA1
2211.06
0.75
0.0001
0.0021



CD4
220.85
0.73
0.0000
0.0002



FCGRT
940.18
0.73
0.0000
0.0003



NT5E
301.10
0.72
0.0058
0.0384



C2
136.50
0.71
0.0000
0.0004



CSF1
88.71
0.69
0.0000
0.0011



HAVCR2
48.56
0.65
0.0035
0.0296



TNFSF12
183.38
0.65
0.0000
0.0001



LAIR1
158.32
0.65
0.0026
0.0245



B2M
22970.01
0.65
0.0008
0.0104



CMKLR1
135.93
0.65
0.0006
0.0081



PDCD1LG2
61.53
0.63
0.0000
0.0007



CD45R0
303.52
0.63
0.0009
0.0115



CD34
105.37
0.63
0.0047
0.0351



XCR1
45.12
0.62
0.0030
0.0261



CYBB
338.71
0.61
0.0022
0.0220



ITGAM
79.52
0.60
0.0013
0.0145



TGFBR2
634.57
0.55
0.0001
0.0024



HLA-DMB
393.95
0.53
0.0004
0.0066



CTSS
748.47
0.50
0.0056
0.0383



IKZF2
58.96
0.50
0.0028
0.0247



CD59
2503.76
0.49
0.0073
0.0443



TNFRSF11A
55.36
0.49
0.0027
0.0247



TNFSF13B
94.44
0.48
0.0068
0.0423



TLR3
53.11
0.46
0.0049
0.0363



STAT5A
163.79
0.45
0.0002
0.0042



IFITM1
1874.75
0.45
0.0068
0.0423



NFKB1
151.67
0.44
0.0010
0.0118



ITGB2
362.43
0.44
0.0078
0.0465



C1S
1402.07
0.43
0.0026
0.0245



SDHA
449.24
0.41
0.0016
0.0174



ETS1
539.67
0.40
0.0032
0.0278



CASP1
190.69
0.37
0.0057
0.0383



C1R
1843.39
0.37
0.0057
0.0383



HLA-DMA
489.96
0.36
0.0053
0.0383



CD74
7154.25
0.35
0.0067
0.0422



MAPK1
510.11
0.34
0.0055
0.0383



IL6ST
1035.06
0.32
0.0006
0.0084

















TABLE 6







those genes significantly downregulated between


microwave treated and untreated skin assessed


on Immunology panel.














Base
log2 Fold





Gene
Mean
Change
p-value
p-adj

















IL8
1285.14
−3.51
0.0000
0.0008



IL1B
186.34
−2.93
0.0000
0.0001



IL6
20.73
−2.33
0.0000
0.0006



CD79A
227.05
−2.09
0.0003
0.0057



SOCS3
405.62
−2.06
0.0000
0.0000



CXCL13
252.65
−1.98
0.0000
0.0010



CXCL1
405.92
−1.98
0.0001
0.0025



PTGS2
53.91
−1.71
0.0001
0.0026



TNFRSF17
61.18
−1.42
0.0018
0.0183



EGR1
148.70
−1.41
0.0055
0.0383



CXCL2
159.48
−1.28
0.0002
0.0032



CCL20
49.70
−1.22
0.0039
0.0311



IL28A
6.95
−1.17
0.0037
0.0308



CD19
43.45
−1.12
0.0004
0.0061



LIF
48.54
−1.07
0.0001
0.0024



IL20
22.40
−0.99
0.0045
0.0339



XBP1
993.22
−0.94
0.0006
0.0081



BCL3
353.32
−0.91
0.0000
0.0004



CXCR4
660.62
−0.81
0.0000
0.0001



MIF
2064.06
−0.74
0.0004
0.0065



CD79B
77.02
−0.73
0.0071
0.0432



KLRG2
39.89
−0.73
0.0043
0.0334



LTB4R
597.46
−0.64
0.0040
0.0319



TNFRSF13C
98.61
−0.63
0.0054
0.0383



IRF3
72.05
−0.60
0.0008
0.0104



TNFAIP3
313.05
−0.59
0.0024
0.0231



BCL2L11
71.16
−0.55
0.0008
0.0104



MAPKAPK2
278.49
−0.51
0.0001
0.0027



HLA-C
3374.79
−0.44
0.0042
0.0325



IL1RAP
223.61
−0.43
0.0062
0.0403



TRAF3
245.66
−0.42
0.0026
0.0245



CASP2
316.72
−0.42
0.0076
0.0458



MCL1
1935.98
−0.40
0.0010
0.0118

















TABLE 7







those genes that are significantly upregulated


genes between microwave treated and


untreated skin assessed on PanCancer panel;














Base
log2 Fold





Gene
Mean
Change
p-value
p-adj

















THBS4
93.07
3.10
0.0000
0.0000



SFRP4
22.13
1.88
0.0001
0.0030



RELN
20.60
1.65
0.0001
0.0023



ETV1
34.49
1.55
0.0000
0.0000



TMPRSS2
17.24
1.31
0.0016
0.0220



MMP7
202.92
1.27
0.0007
0.0122



PPARGC1A
89.69
1.15
0.0000
0.0010



PLCB4
47.93
1.13
0.0000
0.0001



PRKAR2B
141.05
1.11
0.0000
0.0004



AR
72.39
1.10
0.0002
0.0047



FGF2
90.48
1.10
0.0000
0.0000



GHR
44.14
0.91
0.0000
0.0001



PPARG
61.65
0.87
0.0017
0.0220



PLA2G4A
58.95
0.79
0.0000
0.0008



BCL2
103.81
0.77
0.0000
0.0000



KIT
72.69
0.76
0.0002
0.0050



TGFB2
50.53
0.76
0.0001
0.0029



NTRK2
334.85
0.73
0.0030
0.0307



ID4
168.54
0.71
0.0030
0.0307



PDGFD
159.07
0.71
0.0050
0.0451



VEGFC
37.00
0.68
0.0027
0.0303



KITLG
309.93
0.67
0.0001
0.0036



NGFR
83.48
0.67
0.0007
0.0122



HDAC4
172.01
0.66
0.0000
0.0000



TSPAN7
119.23
0.65
0.0000
0.0013



LIFR
160.65
0.65
0.0007
0.0122



USP39
190.37
0.60
0.0000
0.0000



LIG4
107.93
0.58
0.0001
0.0024



FGFR1
346.35
0.54
0.0017
0.0220



B2M
24036.71
0.54
0.0009
0.0141



ID2
422.83
0.54
0.0028
0.0303



DDIT3
142.36
0.53
0.0000
0.0007



GPC4
53.80
0.53
0.0038
0.0369



TGFBR2
787.94
0.52
0.0001
0.0020



AKT3
183.97
0.49
0.0003
0.0057



ALKBH3
130.76
0.42
0.0029
0.0305



NOL7
409.12
0.35
0.0045
0.0415



MAPK1
436.49
0.35
0.0025
0.0283



PRKACB
103.76
0.33
0.0058
0.0497



MAPK9
192.79
0.32
0.0016
0.0220



SKP1
2449.63
0.32
0.0003
0.0064



NF1
276.22
0.29
0.0010
0.0160



SF3B1
740.39
0.29
0.0018
0.0220



RPS27A
23365.03
0.22
0.0037
0.0364

















!TABLE 8







those genes that are significantly


downregulated genes between microwave treated


and untreated skin assessed on PanCancer panel;














Base
log2 Fold





Gene
Mean
Change
p-value
p-adj

















OSM
88.91
−4.09
0.0000
0.0000



IL1B
202.15
−3.20
0.0000
0.0001



GNG4
15.32
−2.56
0.0000
0.0006



FOS
1526.49
−2.54
0.0000
0.0002



IL24
20.95
−2.49
0.0000
0.0001



IL6
19.49
−2.22
0.0000
0.0007



SOCS3
429.31
−2.08
0.0000
0.0000



NR4A1
94.69
−2.00
0.0026
0.0293



CD19
30.18
−1.94
0.0003
0.0064



PAX5
14.85
−1.29
0.0020
0.0240



DUSP2
59.50
−1.16
0.0002
0.0052



LIF
45.57
−1.16
0.0001
0.0027



BCL2A1
53.99
−1.06
0.0031
0.0311



MYC
889.67
−1.03
0.0000
0.0001



EPHA2
180.44
−0.89
0.0000
0.0003



FOSL1
106.32
−0.82
0.0057
0.0495



CACNB3
59.66
−0.70
0.0001
0.0029



ETS2
1508.69
−0.66
0.0003
0.0062



HSPB1
4060.38
−0.66
0.0019
0.0233



CDC7
120.29
−0.66
0.0009
0.0147



COL27A1
191.58
−0.62
0.0002
0.0047



PIM1
1315.32
−0.59
0.0022
0.0256



ID1
1020.68
−0.54
0.0030
0.0307



ALKBH2
67.57
−0.53
0.0017
0.0220



TNFAIP3
442.34
−0.52
0.0021
0.0255



CDKN2D
116.20
−0.51
0.0017
0.0220



MCM7
662.05
−0.48
0.0044
0.0407



VHL
478.69
−0.47
0.0048
0.0434



KRAS
289.73
−0.45
0.0028
0.0303



PIK3R2
292.17
−0.44
0.0016
0.0220



HSP90B1
721.15
−0.42
0.0007
0.0122



CIC
277.81
−0.34
0.0005
0.0098



PML
617.66
−0.32
0.0015
0.0220



MMP3
186.51
−0.23
0.0022
0.0261



TNFRSF100
53.31
−0.21
0.0043
0.0407



IL8
1724.97
−0.16
0.0000
0.0008

















TABLE 9







shows significantly altered common genes between microwave treated


and untreated skin assessed on Immunology and PanCancer panel










Immunology Path
Cancer Path
















Base
log2 Fold


Base
log2 Fold




Gene
Mean
Change
pvalue
padj
Mean
Change
pvalue
padj


















KIT
129.87
0.82
0.0005
0.0072
72.69
0.76
0.0002
0.0050


B2M
22970.01
0.65
0.0008
0.0104
24036.71
0.54
0.0009
0.0141


TGFBR2
634.57
0.55
0.0001
0.0024
787.94
0.52
0.0001
0.0020


MAPK1
510.11
0.34
0.0055
0.0383
436.49
0.35
0.0025
0.0283


IL8
1285.14
−3.51
0.0000
0.0008
1724.97
−0.16
0.0000
0.0008


TNFAIP3
313.05
−0.59
0.0024
0.0231
442.34
−0.52
0.0021
0.0255


LIF
48.54
−1.07
0.0001
0.0024
45.57
−1.16
0.0001
0.0027


CD19
43.45
−1.12
0.0004
0.0061
30.18
−1.94
0.0003
0.0064


SOCS3
405.62
−2.06
0.0000
0.0000
429.31
−2.08
0.0000
0.0000


IL6
20.73
−2.33
0.0000
0.0006
19.49
−2.22
0.0000
0.0007


IL1B
186.34
−2.93
0.0000
0.0001
202.15
−3.20
0.0000
0.0001









Results (see tables 1-9 above) comparing the level of genes expression in (microwave) untreated and (microwave) treated skin tissues (tested using Wald test) revealed:


89 genes in the Immunology V2 panel and 80 genes in the PanCancer pathway were significantly modulated (up and/or down regulated). All achieve significance at p<0.05.


Immunology V2 Panel Results:

Total number of significantly altered genes between treated and untreated skin=89


Significantly upregulated genes (n=56) in the treated skin (see Tables 1 and 5):


B2M, C1R, C1S, C2, C3, CASP1, CCL13, CD209, CD34, CD4, CD59, CD74, CFH, CDH5, CFD, CXCL12, CLEC5A, CMKLR1, CSF1, CTSS, FCER1A, HLA-DPB1, MRC1, MSR1, CYBB, ETS1, FCGRT, HAVCR2, HLA-DMA, HLA-DMB, HLA-DPA1, HLA-DRA, IFITM1, IKZF2, IL6ST, ITGAM, ITGB2, KIT, LAIR1, LGALS3, LILRB4, MAPK1, NFKB1, NT5E, PDCD1LG2, CD45R0, SDHA, SERPING1, STAT5A, TGFBR2, TLR3, TNFRSF11A, TNFSF12, TNFSF13B, VCAM1, XCR1.


Significantly downregulated genes (n=33) in the treated skin (see Tables 2 and 6):


BCL2L11, BCL3, CASP2, CCL20, CD19, CD79B, CXCR4, CD79A, CXCL1, HLA-C, CXCL13, IL1B, IL1RAP, IL20, IL28A, CXCL2, IL8, IRF3, KLRG2, EGR1, LTB4R, MAPKAPK2, MCL1, MIF, IL6, LIF, PTGS2, SOCS3, TNFAIP3, TNFRSF13C, TNFRSF17, TRAF3, XBP1.

In total forty-four genes were found to be significantly upregulated between treated and control skin. On the other hand, thirty-six genes were observed as significantly downregulated between treated and control skin.


PanCancer Pathway Results:

Total number of significantly altered genes between treated and untreated skin=80 (see Tables 3 and 7)


Significantly upregulated genes (n=44) in the treated skin:


AKT3, ALKBH3, AR, B2M, BCL2, DDIT3, ETV1, FGF2, FGFR1, GHR, GPC4, HDAC4, ID2, ID4, KIT, KITLG, LIFR, LIG4, MAPK1, MAPK9, MMP7, NF1, NGFR, NOL7, NTRK2, PDGFD, PLA2G4A, PLCB4, PPARG, PPARGC1A, PRKACB, PRKAR2B, RELN, RPS27A, SF3B1, SFRP4, SKP1, TGFB2, TGFBR2, THBS4, TMPRSS2, TSPAN7, USP39, VEGFC.


Significantly downregulated genes (n=36) in the treated skin (see Tables 4 and 8):


ALKBH2, BCL2A1, CACNB3, CD19, CDCl7, CDKN2D, CIC, COL27A1, DUSP2, EPHA2, ETS2, FOS, FOSL1, GNG4, HSP90B1, HSPB1, ID1, IL1B, IL24, IL6, IL8, KRAS, LIF, MCM7, MMP3, MYC, NR4A1, OSM, PAX5, PIK3R2, PIM1, PML, SOCS3, TNFAIP3, TNFRSF10C, VHL.
Principal Component Analysis (PCA)

The analysis comprises principal component (PC) axes that elucidate distinguished distribution of control and treated skin samples. In FIG. 2, PCA 32 on the Immunology panel comprising first principal axis PC1 33 and second principal axis PC2 34 show variation of 38% and 16.2% respectively depicting 54.2% of variation in total between control and treated skin. Control skin data cells are distinctly clustered together in the region designated numeral 35 whereas treated data cells are prominently clustered together in the region designated 36.


Correspondingly, FIG. 5 illustrates PCA of the significantly transformed genes between treated and control skin on PanCancer panel. The first principal axis PC1 54 and second principal axes PC2 55 represent variation of 35.2% and 11.9% respectively totaling 47.1% variation between treated and control skin clustered distinctly in the regions designated 56 and 57 respectively.


Heatmaps

Further, significantly altered genes between control and microwave treated skin are visualised based on hierarchical clustering and are demonstrated using heatmaps.


The columns/rows of the data matrix are re-ordered according to the hierarchical clustering result, putting similar observations close to each other.


Heatmaps in this document are shown on greyscale depicting blocks of ‘high’ and ‘low’ values on a scale.


In FIG. 3, the heatmap illustrates distinct distribution of significantly altered genes between untreated and microwave treated skin datasets on Immunology panel. Clustered gene dataset values are predominantly positive whereas gene values in the regions designated 47 and 49 are largely negative on the scale. Concurrently, FIG. 6 shows heatmap clustering of significantly altered genes on the PanCancer panel between untreated and microwave treated skin. Clustered gene dataset values between 66 and 68 are mainly positive whereas gene values in the regions designated 67 and 69 are largely negative on the scale.


Gene Count Graphs

Example of gene count comparison between normal (healthy), treated (microwave treated) and control (diseased) skin tissue is depicted in FIG. 4 (Immunology panel) and FIG. 7 (PanCancer pathway).


In FIG. 4, IL6 (interleukin 6, interferon, beta 2) count in the tissue, for example a skin tissue, before 73 and after microwave treatment 72 is shown and is compared with a normal tissue 71 for example healthy skin. IL6 participates in numerous important immunomodulatory pathways such as Cytokine Signaling, Host-pathogen Interaction, Lymphocyte Activation, NLR signalling, Oxidative Stress, Th17 Differentiation, Th2 Differentiation, TNF Family Signaling and TLR Signaling. Microwave treated skin has shown to restore the abnormally upregulated expression of the IL6 gene from the diseased skin and downregulate it to be equivalent to the normal healthy skin.


Similarly, in FIG. 7, gene count of MYC (v-myc avian myelocytomatosis viral oncogene homolog) a proto-oncogene that plays a vital role in cell cycle progression, apoptosis and cellular transformation is shown. MYC also participates in key cancer pathways such as Wnt, TXmisReg, TGF-B, MAPK, JAK-STAT and PI3K. MYC read count is aberrantly upregulated in the diseased skin 83 as compared to the normal skin 81. Upon microwave treatment, the gene count is downregulated and restored 82.


Commonly Affected Genes

Furthermore, as shown in Table 9, eleven common genes in Immunology and PanCancer panels were found to be significantly altered between microwave treated and control skin.


Common Significantly Altered Genes in PanCancer and Immunology V2 Panel (See Table 9: n=11):


Significantly upregulated (n=4): TGFBR2, KIT B2M, MAPK1


Significantly downregulated (n=7): SOCS3, IL1B, IL6, IL8, LIF, CD19, TNFAIP3


The significantly transformed genes in the Human Immunology V2 Panel participate in and modulate various cellular pathways and contribute to vital aspects of the immune system such as adaptive immune system, apoptosis, autophagy, B cell receptor signalling, cell adhesion, chemokine signalling, complement system, cytokine signalling, haemostasis, host-pathogen interaction, immunometabolism, inflammasomes, innate immune system, lymphocyte activation, lymphocyte trafficking, MHC Class I Antigen Presentation, MHC Class II Antigen Presentation, NF-kB signalling, NLR signalling, oxidative stress, phagocytosis and degradation, T cell receptor signalling, TGF-b signalling, Th1 differentiation, Th17 differentiation, Th2 differentiation, TNF family signalling, TLR signalling, Transcriptional regulation, Treg differentiation, Type I Interferon signalling and Type II Interferon signalling.


Significantly dysregulated genes on the PanCancer pathway participate in several key cancer pathways such as Notch, APC (Wnt), Hedgehog, Chromatin Modification, Transcriptional Regulation, DNA Damage Control, TGF-B, MAPK, JAK-STAT, PI3K, RAS, cell cycle and apoptosis [20].


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Claims
  • 1. A method of modulating the expression of one or more genes, said method comprising administering microwave energy to a subject in need thereof.
  • 2. The method of claim 1, wherein the microwave energy administered at a frequency of between about 900 MHz and about 200 GHz.
  • 3. The method of claim 1, wherein the microwave energy is administered at about 915 MHz, at about 2.45 GHz, at about 5.8 GHz, at about 8.0 GHz, or at about 24.125 GHz.
  • 4. The method of claim 1, wherein the microwave energy is administered at an input power of 0.5 W to 40 W.
  • 5. The method of claim 1, wherein the microwave energy is administered for a duration of anywhere between about 0.1 s to 20 s.
  • 6. The method of claim 1, wherein the microwave energy is administered at 5 W for 3s, 4 W for 3s or 3 W for 3s.
  • 7. The method of claim 1, wherein the microwave energy is administered as a series of pulsed doses.
  • 8. The method of claim 7, wherein each pulse dose in the series of pulses is separated from another pulsed dose in the series by a time gap of anywhere between about 1 s to about 60 s
  • 9. The method of claim 1, wherein the microwave energy is administered as 3 doses with a 20 s-time gap between each administered dose.
  • 10. The method of claim 1, wherein the administered microwave energy is non-ablative.
  • 11. The method of claim 10, wherein the non-ablative microwave energy does not cause direct tissue or skin damage.
  • 12. The method of claim 1, wherein one or more of the gene to be modulated encode or provide factors associated with the host immune system.
  • 13. The method of claim 1, wherein one or more of the gene to be modulated encode or provide immunomodulatory factors.
  • 14. The method of claim 1, wherein one or more of the genes to be modulated are oncogenes.
  • 15. The method of claim 1, wherein the one or more genes are presented in Tables 1 or 3.
  • 16. The method of claim 1, wherein the one or more genes are presented in Tables 2 or 4.
  • 17. A method of treating or preventing a skin condition by modulating the expression of one or more genes, said method comprising administering a subject suffering from, or predisposed to, the skin condition, microwave energy.
  • 18. The method of claim 17, wherein the one or more genes are associated with the skin condition to be treated or prevented.
  • 19. The method of claim 17, wherein the gene or genes to be modulated may be directly or indirectly associated with a disease or condition affecting the skin and/or wherein one or more of the genes may be involved or linked with/to one or more pathways or mechanisms associated with a disease or condition of the skin.
  • 20. The method of claim 17, wherein the microwave energy administered at a frequency of between about 900 MHz and about 200 GHz.
  • 21. The method of claim 17, wherein the microwave energy is administered at about 915 MHz, at about 2.45 GHz, at about 5.8 GHz, at about 8.0 GHz, or at about 24.125 GHz.
  • 22. The method of claim 17, wherein the microwave energy is administered at an input power of 0.5 W to 40 W.
  • 23. The method of claim 17, wherein the microwave energy is administered for a duration of anywhere between about 0.1 s to 20 s.
  • 24. The method of claim 17, wherein the microwave energy is administered at 5 W for 3s, 4 W for 3s or 3 W for 3s.
  • 25. The method of claim 17, wherein the microwave energy is administered as a series of pulsed doses.
  • 26. The method of claim 25, wherein each pulse dose in the series of pulses is separated from another pulsed dose in the series by a time gap of anywhere between about 1 s to about 60 s
  • 27. The method of claim 17, wherein the microwave energy is administered as 3 doses with a 20 s-time gap between each administered dose.
  • 28. The method of claim 17, wherein the administered microwave energy is non-ablative.
  • 29. The method of claim 28, wherein the non-ablative microwave energy does not cause direct tissue or skin damage.
  • 30. The method of claim 17, wherein the expression of one or more of the genes is/are either (i) downregulated, inhibited or reduced or (ii) upregulated, induced, promoted or stimulated.
  • 31. The method of claim 17, wherein the microwave energy is administered to a diseased tissue.
  • 32. The method of claim 17, wherein the microwave energy is administered to a tissue exhibiting the signs or symptoms characteristic of one or more diseases.
  • 33. The method of claim 17, wherein the microwave energy is administered to the skin and/or diseased skin.
  • 34. The method of claim 17, wherein the microwave energy is administered to: (i) aging skin; or(ii) skin which exhibits solar damage; or(iii) skin with one or more scars, erosion and/or lesions.
  • 35. The method of claim 17, wherein the disease to be treated or prevented is a wart, eczema, psoriasis, acne, cherry angioma, hidradenitis suppurativa, rosacea, ichthyosis, keloid scars, seborrheic dermatitis, seborrheic keratosis, seborrheic hyperplasia, Sebaceous hyperplasia, basal cell carcinoma, actinic keratosis, syringoma, squamous cell carcinoma, nevus, lentigo maligna, Melasma, melanoma, milia, molluscum contagiosum, cervical intraepithelial neoplasia, vaginal intraepithelial neoplasia, vulvar intraepithelial neoplasia, Bowen's disease and/or erythroplasia of queyrat.
  • 36. The method of claim 17, wherein the disease to be treated or prevented is gastric epithelial dysplasia, cardiovascular lesions, conditions involving oral cavity such as epithelial dysplasia, leukoplakia, hairy leukoplakia, erythroplakia, erythroleukoplakia, lichen planus, xerostomia, mucositis, pyogenic granuloma, angioma, nicotinic stomatitis, actinic cheilitis, keratoacantoma, hyperkeratosis, candidosis, erythema migrans and/or a canker sore.
  • 37. A method of treating a disease or condition associated with the downregulation or inhibition of a particular gene, said method comprising administering a subject in need thereof microwave energy to upregulate the gene thereby restoring the level of expression, activity and/or function of the gene to treat or prevent the disease or condition.
  • 38. The method of claim 37, wherein the disease or condition is a disease or condition of the skin.
  • 39. A method of treating a disease or condition associated with the upregulation of a particular gene, said method comprising administering a subject in need thereof microwave energy to downregulate the gene thereby restoring the level of expression, activity and/or function of the gene to treat or prevent the disease or condition.
  • 40. The method of claim 39, wherein the disease or condition is a disease or condition of the skin.
CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims the benefit of the filing dates of U.S. Provisional Patent Application No. 62/989,957, filed on Mar. 16, 2020, the entire contents of which is incorporated herein by reference.

Provisional Applications (1)
Number Date Country
62989957 Mar 2020 US