MODULATION OF A PATHOGENIC PHENOTYPE IN TH1 CELLS

Abstract
The subject matter disclosed herein is generally directed to pathogenic Th1 cells whose phenotype is dependent on IL-23R signaling. Th1 cell specific therapeutic targets and gene programs are disclosed herein. In particular, inhibition of CD160 reduces Th1 cell pathogenicity.
Description
REFERENCE TO AN ELECTRONIC SEQUENCE LISTING

The contents of the electronic sequence listing (“BROD-5340WP_ST25.txt”; Size is 59,263 bytes and it was created on Jan. 20, 2022) is herein incorporated by reference in its entirety.


TECHNICAL FIELD

The subject matter disclosed herein is generally directed to colitogenic Th1 cells whose phenotype is dependent on IL-23R signaling.


BACKGROUND

The cytokine IL-23 and its receptor IL-23R play a fundamental role in inducing tissue inflammation and autoimmunity4. It has been shown that pre-clinical models of Multiple Sclerosis, arthritis and inflammatory bowel disease (IBD) are all protected from disease in animals deficient for IL-23 signaling.1-3. The relevance to human disease is emphasized by genome-wide association studies (GWAS) that established IL-23R as a risk gene in multiple human autoimmune diseases including IBD5 and a number of anti-IL-23 inhibitors have been approved for the treatment of Psoriasis and are now being tested in other autoimmune conditions where Th17 cells have not been implicated in disease induction12.


IL-23R signaling is crucial for evoking a pathogenic phenotype in Th17 cells by stabilizing their function and inducing multiple factors that make Th17 cells highly pro-inflammatory13. Although the Th17 cell subset is most prominently associated with IL-23R function, several observations, however, have been difficult to reconcile under the assumption that IL-23R solely operates in pathogenic Th17 cells and not other pathogenic subsets. Importantly, in the pre-clinical colitis models, IL-23R signaling has also been implicated in regulating FoxP3+Treg function14, 15. However, it has been observed that bona fide Th1 cells also elicit colitis in pre-clinical models, particularly in the adoptive transfer colitis model7, but Th1 cells are not known to express IL-23R. These data are conflicting with the observation that IL-23R signaling is required for the induction of colitis. Interestingly, a recent report suggests that Th17 cells need to transdifferentiate into Th1 cells to elicit colitis in this model7, however, whether Th1 cells themselves, driven by IL-23R, could trigger colitis without going through a Th17 cell-state has not been addressed. Clinically, secukinumab, a monoclonal antibody targeting IL-17A has been found effective in plaque psoriasis, psoriatic arthritis and ankylosing spondylitis yet ineffective in IBD6. In contrast, ustekinumab, a monoclonal antibody targeting both IL-12 and IL-23, and therefore targeting differentiation of both Th1 cells and Th17 cells, has proven to be effective in treating IBD16,17. Indeed, the seminal studies by Powrie and colleagues have established that both Th1 and Th17 cells develop in the pre-clinical disease model of IBD through the adoptive transfer of naïve CD45RBhi T cells3,18. These observations raised important questions and provided impetus to investigate whether IL-23 may also confer pathogenicity to another T helper cell subset, in addition to quintessential Th17 cells, to thereby contribute to the induction of IBD.


Citation or identification of any document in this application is not an admission that such a document is available as prior art to the present invention.


SUMMARY

In one aspect, the present invention provides for a method of treating an autoimmune disease caused by pathogenic Th1 cells comprising administering one or more agents capable of inhibiting the expression, activity and/or function of one or more genes selected from the group consisting of CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW. In certain embodiments, the one or more agents inhibit the expression, activity and/or function of CD160. In certain embodiments, the one or more agents inhibit the expression, activity and/or function of GPR18. In certain embodiments, the one or more agents comprises an antibody, antibody fragment, intrabody, small molecule, small molecule degrader, antibody-like protein scaffold, aptamer, polypeptide, genetic modifying agent, or any combination thereof. In certain embodiments, the genetic modifying agent comprises an RNA-guided nuclease system, RNAi system, a zinc finger nuclease, a TALE, or a meganuclease. In certain embodiments, the RNA-guided nuclease system is a CRISPR system or IscB system. In certain embodiments, the CRISPR system comprises a CRISPR-Cas base editing system, a prime editor system, or a CAST system.


In another aspect, the present invention provides for a method of treating an autoimmune disease caused by pathogenic Th1 cells comprising administering Th1 cells modified to have decreased expression of IL-23R.


In another aspect, the present invention provides for a method of detecting a Th1 inflammatory response for diagnosis or monitoring of a treatment of a subject suffering from an autoimmune disease caused by colitogenic Th1 cells comprising detecting in a sample obtained from the subject Th1 cells expressing one or more genes selected from the group consisting of: IL23R, CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW, wherein the expression of one or more genes are increased in an inflammatory response; or clusters 2, 9 and 7 in Table 3, wherein the expression of one or more genes or program from cluster 2 and/or 9 are increased in an inflammatory response and the expression of one or more genes or program in cluster 7 are decreased in an inflammatory response. In certain embodiments, the treatment comprises one or more agents capable of inhibiting the expression, activity and/or function of CD160, GPR18, IL-23, or IL-12 and IL-23. In certain embodiments, the Th1 cells are detected by immunohistochemistry (IHC), fluorescence activated cell sorting (FACS), fluorescently bar-coded oligonucleotide probes, RNA FISH (fluorescent in situ hybridization), RNA-seq, or any combination thereof. In certain embodiments, the Th1 cell expression is inferred from bulk RNA-seq. In certain embodiments, the Th1 cell expression is determined by single cell RNA-seq. In certain embodiments, the sample is obtained by biopsy.


In certain embodiments, the autoimmune disease is inflammatory bowel disease (IBD) or type 1 diabetes.


In another aspect, the present invention provides for a method of obtaining IL-23R+Th1 cells comprising differentiating naïve CD4+ T cells in vitro with IL-12 and IL-21. In certain embodiments, the method further comprises differentiating with IL-23.


In another aspect, the present invention provides for a method of treating cancer comprising administering to a subject in need thereof Th1 cells differentiated according to any embodiment herein. In certain embodiments, the naïve CD4+ T cells are obtained from the subject.


In another aspect, the present invention provides for a method of screening for drugs capable of shifting pathogenic Th1 cells to non-pathogenic Th1 cells comprising: treating Th1 cells obtained according to any embodiment herein with a drug candidate; detecting expression of one or more genes or program selected from cluster 2, 9 or 7 in Table 3; and identifying the drug, wherein the expression of one or more genes or program from cluster 2 or 9 decrease, and/or the expression of one or more genes or program in cluster 7 increase as compared to cells not contacted with the drug candidate.


These and other aspects, objects, features, and advantages of the example embodiments will become apparent to those having ordinary skill in the art upon consideration of the following detailed description of example embodiments.





BRIEF DESCRIPTION OF THE DRAWINGS

An understanding of the features and advantages of the present invention will be obtained by reference to the following detailed description that sets forth illustrative embodiments, in which the principles of the invention may be utilized, and the accompanying drawings of which:



FIGS. 1A-1G—IL-12+IL-21 strongly induce IL-23R in Th1 cells in vitro. FIG. 1a, Naïve CD44lowCD62Lhi CD4+ T cells were cultured under four different conditions in vitro for 5 days on anti-CD3/CD28 antibody-coated plates with the following conditions: TGF-β+IL-6 (non-pathogenic Th17 cells), IL-1β+IL-6+IL-23 (pathogenic Th17 cells), IL-12+IL-21 and IL-12+IL-21+IL-23. Flow cytometry was used to measure the extent of IL-23R expression taking advantage of an eGFP reporter allele. FIG. 1b, qPCR analysis shows the expression of Il23r in wildtype (Il23reGFP/wt) cells. Important signature Th1 and Th17 genes such as Ifng, Il17a, Tbx21, Rorc and Stat3 were measured in both wildtype (Il23reGFP/wt) and KO cells (Il23reGFP/eGFP) FIG. 1c, Schematic of sorting by FACS of IL-23R+ (eGFP+) and IL-23R (eGFP) cells differentiated with IL-12+IL-21+IL-23 in preparation of scRNAseq (Smart-seq2). FIG. 1d, t-SNE plots showing the expression of Th1 and Th17 signature genes. FIG. 1e, Selected genes are shown that are expressed in eGFP+ and eGFP cells in wildtype (Il23reGFP/wt) cells. Green violin plots represent eGFP+-sorted cells. FIG. 1f, 528 genes were found to be differentially expressed between eGFP+ and eGFP cells from wildtype cells (Il23reGFP/wt) In knockout cells for IL-23R (Il23reGFP/eGFP) only 129 genes were found to be differentially expressed between eGFP+ and eGFP cells. FIG. 1g, Volcano plot showing genes differentially expressed in an IL-23R dependent manner. An interaction coefficient was computed to identify differences between the eGFP+ and eGFP populations which varied according to genotype (wildtype Il23reGFP/wt vs. knockout Il23reGFP/eGFP) Panel a is representative of several experiments and mean+s.e.m are shown. In Panel b mean+s.e.m are shown.



FIGS. 2A-2F—scRNAseq of tissue-infiltrating Th1 cells in a pre-clinical model of adoptive transfer colitis. FIG. 2a, Schematic of adoptive transfer colitis by in vitro differentiated Th1 cells followed by histopathology and 10× scRNAseq. Viable CD45+CD4+ T lymphocytes from RAG1−/− recipients of either wildtype cells (Il23rwt/eGFP) or knockout cells (Il23reGFP/eGFP) respectively, were isolated from the intestinal mucosa through FACS in preparation of scRNAseq. FIG. 2b, Deficiency of IL-23R protects from Th1 cell mediated adoptive transfer colitis as evaluated by histopathology. H&E staining and clinical score are shown. Mean+s.e.m. FIG. 2c, UMAP of 30,260 single cells sequenced from spleen, colonic and small intestinal (SI) lamina propria (LPL) and colonic epithelium (IEL=intraepithelial lymphocytes). FIG. 2d, Heatmap of differentially expressed genes among the tissues analyzed with selected genes highlighted as dot plots. FIG. 2e, Identification of wildtype (teal) and knockout cells (magenta), respectively. FIG. 2f, Selected genes are shown that are expressed in an IL-23R dependent manner. Red representing higher expression in wildtype cells and blue representing higher expression in knockout cells.



FIGS. 3A-3E—IL-23R drives the expansion of highly inflammatory and colitogenic T cells in the lamina propria as identified by scRNAseq. FIG. 3a, UMAP of T cells isolated from the lamina propria of small intestine and colon. Wildtype cells (teal) and knockout cells (magenta) are highlighted. FIG. 3b, Cluster analysis identifies 12 clusters with particular transcriptional signatures. FIG. 3c, The size of each cluster is shown as a percentage of the total number of cells. For each cluster, its relative abundance among wild type vs. knockout cells is visualized. FIG. 3d, Two clusters with a highly inflammatory and colitogenic signature are shown (clusters 2 and 9) which are dominated by wildtype cells. The top 20 differentially expressed genes in comparison to all other clusters are shown. Cluster 7 consists in the majority of knockout cells and exhibits a signature reminiscent of Tr-like cells FIG. 3e, Applicants assembled a list of genes (597 genes) found within IBD GWAS risk loci for which De Lange et al. (2017) provided the main basis. Applicants then asked which of these genes are expressed in clusters 2, 7 and 9 in an IL-23R-dependent manner comparing expression levels between wildtype and knockout cells. Positive values indicate higher expression in wildtype cells (Il23reGFP/wt) Asterisks indicate statistically significant differences (FDR<0.1).



FIGS. 4A-4E—Ranking algorithm and validation identify novel drivers of T cell-mediated intestinal inflammation in an IL-23R dependent manner. FIG. 4a, Identification and ranking of potential novel drivers of intestinal inflammation taking several critical considerations into account. 4 tracks are shown. Track 1: Genes are evaluated based on their expression in vivo in a cluster and genotype specific manner emphasizing clusters 2 and 9. Track 2: Genes are ranked based on their tissue specific expression comparing intestinal and peripheral (splenic) expression. Track 3: Genes are ranked based on their IL-23R dependent expression in vitro following differentiation with IL-12+IL-21+IL-23 (Smart-seq2 data from FIG. 1). Track 4: Genes that are found within an IBD GWAS risk locus are identified contributing to an increased ranking score. See methods for details of ranking. FIG. 4b, Deficiency for CD160 in Th1 cells adoptively transferred into RAG1−/− recipients protects from colitis. Representative H&E histopathological stainings are shown. FIG. 4c, Intestinal inflammation and colitis are scored in the following way: 0 (healthy)-4 (most severe colitis). Pooled data from three independent experiments are shown for small intestine and proximal colon. Mean+s.e.m. are indicated. FIG. 4d, Colon length in RAG1−/− recipients of either wildtype or CD160−/− cells. Pooled data are shown from two independent experiments. FIG. 4e, Gzmb expression is measured by flow cytometry in both Cd160+/+ and Cd160−/− Th1 cells prior to adoptive transfer. One experiment. Technical replicates. A t-test was used to determine statistical significance in panels c, d and e.



FIG. 5—Cytokine screen identifies IL-21 as a cytokine that together with IL-12 induces strong expression of IL-23R in Th1 cells in vitro. Applicants isolated naïve T cells from Il23rwt/eGFP reporter mice and tested 19 different conditions. IL-23R expression was measured by flow cytometry identifying eGFP+ cells. Several conditions strongly induced IL-23R expression including the pathogenic Th17 cell condition IL-1β+IL-6+IL-23. The strongest expression of IL-17 was observed with the condition TGF-β+IL-6. Even though IL-21 and IL-6 alone induced IL-23R expression they resulted in the complete lack of IFN-γ expression and showed slight induction of IL-17A. Importantly, both IL-12+IL-21 and IL-12+IL-21+IL-23 induced strong expression of the Th1 cell signature cytokine IFN-γ and complete lack of IL-17A expression.



FIG. 6—Dot plot showing expression of 12 key genes in Th1 and Th17 cell biology across the 4 populations profiled by Smart-seq2. Tbx21, Il12rb2 and Il21r expression appeared largely unaltered by deficiency for Il23r which was consistent with unaltered expression between eGFP+ and eGFP populations. Of note, the expression level of Il23r in knockout cells (Il23reGFP/eGFP) is merely reminiscent of the fact that these cells produce mRNA truncated of the essential C-terminal region of IL-23R which was replaced by an IRES-eGFP sequence which results in a functional KO but is detected by Smart-seq2.



FIGS. 7A-7D—IL-23R+ Th1 and IL-23R+ Th17 cells show both common and unique transcriptional signatures. Pathogenic Th17 cells were differentiated with IL-1β+IL-6+IL-23 and IL-23R+ (i.e., eGFP+) and IL-23R (i.e., eGFP) were sorted and then single-cell Smart-seq2 was performed and the transcriptional signatures were compared to Th1 cells differentiated with IL-12+IL-21+IL-23 reported in FIG. 1. FIG. 7a, Th1 cells and Th17 cells show a set of genes that is similarly regulated in both IL-23R+ cells from either population. FIG. 7b, Some genes are differentially regulated between IL-23R+ and IL-23R cells in Th1 cells only. FIG. 7c, Some genes show the exact opposite behavior in Th1 and Th17 cells. FIG. 7d, A fourth set of genes was differentially regulated between IL-23R+ and IL-23R cells in Th17 cells only.



FIGS. 8A-8G—Tissue infiltrating CD45+CD4+ T cells show strong expression of IFN-γ. Flow cytometric analyses of tissue infiltrating T cells isolated from the intestine of recipients of either wildtype or IL-23R KO cells and cultured ON with the cytokines IL-7+IL-23. ICC was performed after restimulation with PMA/ionomycin. FIG. 8a, Colonic LPL cells. Two recipients of wildtype cells (Il23reGFP/wt) and one recipient of KO cells (Il23reGFP/eGFP) are shown. Gated on viable CD45+ cells. FIG. 8b, FIG. 8c ICC for IFN-γ, IL-17A and GMCSF of the two recipients of wildtype cells is shown. FIG. 8d, Colonic IEL cells. One recipient of wildtype cells and one recipient of KO cells are shown. Gated on viable CD45+ cells. FIG. 8e, ICC for IFN-γ and IL-17A of the IEL samples. FIG. 8f, FIG. 8g Pooled values of LPL and IEL samples. LPL and IEL samples were isolated and analyzed in independent experiments. Data in panels f and g are mean±SD. Unpaired t-test, p value **<0.01 in panel f.



FIG. 9—Cluster 8 represents highly proliferating cells. UMAPs show that cells of cluster 8 highly express genes critical to cell cycle progression such as Cdc20, Ccnb1 (cyclin B), Cdc6, Cdk1 and the proliferative marker Mki67.



FIGS. 10A-10D—IL-23R negatively impacts the development of regulatory Tr1 cells in the intestinal lamina propria as identified by scRNAseq. FIG. 10a, UMAPs and correlated expression profiles of signature genes of regulatory Tr cells exposing cluster 7. FIG. 10b, Dot plot showing the expression of signature genes in comparison to all other clusters. FIG. 10c, Transcriptional signature of Tr regulatory cells identified by Gruarin et al. (2019) highlights cluster 7. FIG. 10d, Volcano plot highlighting differentially expressed genes between wildtype (Il23reGFP/wt) and knockout (II23reGFP/eGFP) cells within cluster 7.



FIGS. 11A-11B—In vitro differentiated Th1 cells from either Cd160+/+ or Cd160−/− cells do not show a difference in IFN-γ expression prior to adoptive transfer. FIG. 11a, In vitro differentiated Th1 cells do not show a difference in IFN-γ production under culture with IL-12+IL-21+IL-23 between wildtype and CD160 knockout cells. One representative experiment of three independent experiments is shown. FIG. 11b, Pooled data from in vitro differentiated Th1 cells are shown prior to adoptive transfer into RAG1−/− mice. 3 independent experiments. Mean is shown with SD error bars. All differences are non-significant.



FIG. 12—Overview of T cell and NK cell markers in cells isolated from the intestinal mucosa (LPL) and sequenced by 10× technology. UMAPs of cells sequenced that show uniform expression of CD45, CD3, CD4 and lack expression of NK cell markers such as NK1.1, CD56 and CD16 in addition to the lack of CD8a.





The figures herein are for illustrative purposes only and are not necessarily drawn to scale.


DETAILED DESCRIPTION OF THE EXAMPLE EMBODIMENTS
General Definitions

Unless defined otherwise, technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this disclosure pertains. Definitions of common terms and techniques in molecular biology may be found in Molecular Cloning: A Laboratory Manual, 2nd edition (1989) (Sambrook, Fritsch, and Maniatis); Molecular Cloning: A Laboratory Manual, 4th edition (2012) (Green and Sambrook); Current Protocols in Molecular Biology (1987) (F. M. Ausubel et al. eds.); the series Methods in Enzymology (Academic Press, Inc.): PCR 2: A Practical Approach (1995) (M. J. MacPherson, B. D. Hames, and G. R. Taylor eds.): Antibodies, A Laboratory Manual (1988) (Harlow and Lane, eds.): Antibodies A Laboratory Manual, 2nd edition 2013 (E. A. Greenfield ed.); Animal Cell Culture (1987) (R. I. Freshney, ed.); Benjamin Lewin, Genes IX, published by Jones and Bartlet, 2008 (ISBN 0763752223); Kendrew et al. (eds.), The Encyclopedia of Molecular Biology, published by Blackwell Science Ltd., 1994 (ISBN 0632021829); Robert A. Meyers (ed.), Molecular Biology and Biotechnology: a Comprehensive Desk Reference, published by VCH Publishers, Inc., 1995 (ISBN 9780471185710); Singleton et al., Dictionary of Microbiology and Molecular Biology 2nd ed., J. Wiley & Sons (New York, N.Y. 1994), March, Advanced Organic Chemistry Reactions, Mechanisms and Structure 4th ed., John Wiley & Sons (New York, N.Y. 1992); and Marten H. Hofker and Jan van Deursen, Transgenic Mouse Methods and Protocols, 2nd edition (2011).


As used herein, the singular forms “a” “an”, and “the” include both singular and plural referents unless the context clearly dictates otherwise.


The term “optional” or “optionally” means that the subsequent described event, circumstance or substituent may or may not occur, and that the description includes instances where the event or circumstance occurs and instances where it does not.


The recitation of numerical ranges by endpoints includes all numbers and fractions subsumed within the respective ranges, as well as the recited endpoints.


The terms “about” or “approximately” as used herein when referring to a measurable value such as a parameter, an amount, a temporal duration, and the like, are meant to encompass variations of and from the specified value, such as variations of +/−10% or less, +/−5% or less, +/−1% or less, and +/−0.1% or less of and from the specified value, insofar such variations are appropriate to perform in the disclosed invention. It is to be understood that the value to which the modifier “about” or “approximately” refers is itself also specifically, and preferably, disclosed.


As used herein, a “biological sample” may contain whole cells and/or live cells and/or cell debris. The biological sample may contain (or be derived from) a “bodily fluid”. The present invention encompasses embodiments wherein the bodily fluid is selected from amniotic fluid, aqueous humour, vitreous humour, bile, blood serum, breast milk, cerebrospinal fluid, cerumen (earwax), chyle, chyme, endolymph, perilymph, exudates, feces, female ejaculate, gastric acid, gastric juice, lymph, mucus (including nasal drainage and phlegm), pericardial fluid, peritoneal fluid, pleural fluid, pus, rheum, saliva, sebum (skin oil), semen, sputum, synovial fluid, sweat, tears, urine, vaginal secretion, vomit and mixtures of one or more thereof. Biological samples include cell cultures, bodily fluids, cell cultures from bodily fluids. Bodily fluids may be obtained from a mammal organism, for example by puncture, or other collecting or sampling procedures.


The terms “subject,” “individual,” and “patient” are used interchangeably herein to refer to a vertebrate, preferably a mammal, more preferably a human. Mammals include, but are not limited to, murines, simians, humans, farm animals, sport animals, and pets. Tissues, cells and their progeny of a biological entity obtained in vivo or cultured in vitro are also encompassed.


Various embodiments are described hereinafter. It should be noted that the specific embodiments are not intended as an exhaustive description or as a limitation to the broader aspects discussed herein. One aspect described in conjunction with a particular embodiment is not necessarily limited to that embodiment and can be practiced with any other embodiment(s). Reference throughout this specification to “one embodiment”, “an embodiment,” “an example embodiment,” means that a particular feature, structure or characteristic described in connection with the embodiment is included in at least one embodiment of the present invention. Thus, appearances of the phrases “in one embodiment,” “in an embodiment,” or “an example embodiment” in various places throughout this specification are not necessarily all referring to the same embodiment, but may. Furthermore, the particular features, structures or characteristics may be combined in any suitable manner, as would be apparent to a person skilled in the art from this disclosure, in one or more embodiments. Furthermore, while some embodiments described herein include some but not other features included in other embodiments, combinations of features of different embodiments are meant to be within the scope of the invention. For example, in the appended claims, any of the claimed embodiments can be used in any combination.


All publications, published patent documents, and patent applications cited herein are hereby incorporated by reference to the same extent as though each individual publication, published patent document, or patent application was specifically and individually indicated as being incorporated by reference.


Overview

Embodiments disclosed herein provide methods of treating Th1 cell-mediated autoimmune diseases, generating IL-23R+ Th1 cells, and detection and modulation of pathogenic and regulatory cell programs. The cytokine receptor IL-23R plays a fundamental role in inflammation and autoimmunity1-5. However, several observations have been difficult to reconcile under the assumption that only Th17 cells critically depend on IL-23 to acquire a pathogenic phenotype6,7. To this end, Applicants performed a cytokine screen and discovered that the cytokine combination IL-12+IL-21 strongly induces IL-23R on Th1 cells in vitro. Th1 cells differentiated in vitro with IL-12+IL-21 show similar levels of IL-23R expression as in pathogenic Th17 cells8,9. Applicants demonstrate that IL-23R is required for Th1 cells to acquire a highly pathogenic/colitogenic phenotype in an adoptive transfer colitis model3,7. Thus, the Th1 cells were pathogenic. Loss of IL-23R expression on Th1 cells almost completely abrogated the ability of Th1 cells to transfer colitis. Thus, the Th1 cells were non-pathogenic. Using massively parallel single-cell RNA-sequencing (scRNAseq) of intestinal tissue-infiltrating colitogenic Th1 cells, Applicants demonstrated a striking expression of genes that promote inflammation and linked these genes with multiple pathways implicated in the induction of IBD in humans as identified by GWAS analysis. scRNAseq analysis of intestinal T cells enabled identification of novel regulators induced by IL-23R-signaling in Th1 cells which differed from those expressed in Th17 cells9-11. Applicants identified a number of novel regulators induced by IL-23R-dependent signaling in Th1 cells and demonstrated a critical role for the IL-23R-dependent gene Cd160 in colitis. The perturbation of CD160 in Th1 cells inhibited induction of colitis, validating the role of IL-23R signaling in Th1 cells.


Applicants were able to uncouple IL-23R as a purely Th17 cell-specific factor and implicate IL-23R signaling as a pathogenic driver of Th1 cell-mediated tissue inflammation and disease. Thus, Applicants identified a pathogenic function for IL-23R signaling in Th1 cells that promotes colitis, expanding the importance of this pathway beyond Th17 cells in autoimmune disease and enabling identification of novel targets linked with human IBD for further investigation. The findings provide a reason to target the pathogenic function of IL-23R in autoimmune diseases in which Th1 or other T cell subsets are the main drivers of the disease.


Pathogenic Th1 Cells

The present invention identified pathogenic Th1 cells. As used herein, pathogenic Th1 cells refer to Th1 cells capable of inducing inflammation or an autoimmune response in vivo. In regard to the digestive track, pathogenic Th1 cells are also referred to herein as colitogenic Th1 cells. In certain embodiments, pathogenic Th1 cells are IFN-γ-producing Th1 cells. In certain embodiments, pathogenic Th1 cells are characterized by high expression of IL-23R or are IL-23R+Th1 cells. In certain embodiments, pathogenic Th1 cells express a gene program comprising one or more of IL23R, CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW.


In certain embodiments, pathogenic Th1 cells express a gene program described herein as cluster 2 or LPL-2 (see, Table 3). For example, the top 50 genes differentially expressed for cluster 2 compared to all other Th1 clusters includes Lgals1, Crip1, S100a6, S100a10, Lgals3, S100a4, Itgb1, Emp3, Actg1, Vim, Ifitm1, Rps27, Rps29, Itgb7, Ms4a4b, Junb, Pglyrp1, Lsp1, Cd52, Klrd1, Got1, Odc1, Nkg7, Cd48, Glipr2, Anxa1, Klf2, Pycard, Rps28, AA467197, Ramp3, Rps27rt, Fxyd5, S1pr4, Rgs1, Bin2, Zyx, Anxa2, Tnfrsf4, Ifitm2, Ctla4, Malat1, Crem, Ifitm3, Myl6, Gnal5, Reep5, Rpl12, S1pr1 and Arhgdib (Positive log FC values are associated with genes with higher expression in cluster 2 and negative log FC values are associated with genes with lower expression in cluster 2). As used herein an increase in cluster 2 means an increase in the gene program that includes both upregulated and downregulated genes.


In certain embodiments, pathogenic Th1 cells express a gene program described herein as cluster 9 or LPL-9 (see, Table 3). For example, the top 50 genes differentially expressed for cluster 9 compared to all other Th1 clusters includes Vps37b, Ubald2, Junb, H3f3b, Ifngr1, Bhlhe40, AW112010, Cd52, Tnfrsf4, Eif1, Odc1, Btg1, Tmsb4x, Gramd3, Hspa5, Ctla4, Jund, Dusp5, Pnrc1, Ifrd1, Prr7, Nfkbia, Pim1, Tnfaip3, Bcl2a1b, Tgif1, Icos, Orail, Il21r, Crem, Cd160, Cytip, Btg2, Rgs2, Gna13, Ramp3, Gpr132, Rsrp1, Hspa8, Kdm6b, Dnaja1, Tbc1d10c, Traf1, Got1, Serpinb9, Tnfsf8, Arf4, Dgat1, Fos12 and Sub1 (Positive log FC values are associated with genes with higher expression in cluster 9 and negative log FC values are associated with genes with lower expression in cluster 9). As used herein an increase in cluster 9 means an increase in the gene program that includes both upregulated and downregulated genes.


In certain embodiments, regulatory Th1 cells express a gene signature or gene program described herein as cluster 7 (see, Table 3). In certain embodiments, regulatory Th1 cells are also referred to as non-pathogenic Th1 cells or Tr1-like cells. For example, the top 50 genes differentially expressed for cluster 7 compared to all other Th1 clusters includes Eomes, Gzmk, Cd27, Furin, Ifitm2, Cxcr6, Cc15, Plac8, Esm1, Gm43291, Sh3bgr13, Tnfsf8, Sh2d1a, Bend4, Rgs16, Tmsb4x, Ly6e, Tmsb10, Rpa2, Ifitm3, Nkg7, Tox, Cd52, Emb, Chchd10, Pim1, Lgals1, Vim, Cldnd1, Rgs10, Actn2, Cxcr5, Lgals3, Capg, Rpl41, AA467197, Tapbpl, Ly6a, Il18r1, Saraf, Asb2, Itgb7, Rasgef1a, Klrg1, Tmem176b, Tnfsf11, Dcp1b, Rps27, Fxyd5 and H2afy (Positive log FC values are associated with genes with higher expression in cluster 7 and negative log FC values are associated with genes with lower expression in cluster 7). As used herein an increase in cluster 7 means an increase in the gene program that includes both upregulated and downregulated genes.


As used herein an increase in a cluster means an increase in the gene program that includes both upregulated and downregulated genes (i.e., there is an increase in Th1 cells expressing the program or the expression of genes in a cell is shifted closer to the gene program than in a control or to any other programs). Clusters as described herein can also be described as a metagene. As used herein a “metagene” refers to a pattern or aggregate of gene expression and not an actual gene. Each metagene may represent a collection or aggregate of genes behaving in a functionally correlated fashion within the genome. The metagene can be increased if the pattern is increased. As used herein the term “gene program” or “program” can be used interchangeably with “biological program”, “expression program”, “transcriptional program”, “expression profile”, “signature”, “gene signature” or “expression program” and may refer to a set of genes that share a role in a biological function (e.g., an activation program, cell differentiation program, proliferation program). Biological programs can include a pattern of gene expression that result in a corresponding physiological event or phenotypic trait (e.g., inflammation). Biological programs can include up to several hundred genes that are expressed in a spatially and temporally controlled fashion. Expression of individual genes can be shared between biological programs. Expression of individual genes can be shared among different single cell types; however, expression of a biological program may be cell type specific or temporally specific (e.g., the biological program is expressed in a cell type at a specific time). Multiple biological programs may include the same gene, reflecting the gene's roles in different processes. Expression of a biological program may be regulated by a master switch, such as a nuclear receptor or transcription factor.


As used herein a “signature” or “gene program” may encompass any gene or genes, protein or proteins, or epigenetic element(s) whose expression profile or whose occurrence is associated with a specific cell type, subtype, or cell state of a specific cell type or subtype within a population of cells. For ease of discussion, when discussing gene expression, any of gene or genes, protein or proteins, or epigenetic element(s) may be substituted. Levels of expression or activity or prevalence may be compared between different cells in order to characterize or identify for instance signatures specific for cell (sub)populations. Increased or decreased expression or activity or prevalence of signature genes may be compared between different cells in order to characterize or identify for instance specific cell (sub)populations. The detection of a signature in single cells may be used to identify and quantitate for instance specific cell (sub)populations. A signature may include a gene or genes, protein or proteins, or epigenetic element(s) whose expression or occurrence is specific to a cell (sub)population, such that expression or occurrence is exclusive to the cell (sub)population. A gene signature as used herein, may thus refer to any set of up- and down-regulated genes that are representative of a cell type or subtype. A gene signature as used herein, may also refer to any set of up- and down-regulated genes between different cells or cell (sub)populations derived from a gene-expression profile. For example, a gene signature may comprise a list of genes differentially expressed in a distinction of interest.


The signature as defined herein (being it a gene signature, protein signature or other genetic or epigenetic signature) can be used to indicate the presence of a cell type, a subtype of the cell type, the state of the microenvironment of a population of cells, a particular cell type population or subpopulation, and/or the overall status of the entire cell (sub)population. Furthermore, the signature may be indicative of cells within a population of cells in vivo. The signature may also be used to suggest for instance particular therapies, or to follow up treatment, or to suggest ways to modulate immune systems. The presence of subtypes or cell states may be determined by subtype specific or cell state specific signatures. The presence of these specific cell (sub)types or cell states may be determined by applying the signature genes to bulk sequencing data in a sample. Not being bound by a theory the signatures of the present invention may be microenvironment specific, such as their expression in a particular spatio-temporal context. Not being bound by a theory, signatures as discussed herein are specific to a particular pathological context. Not being bound by a theory, a combination of cell subtypes having a particular signature may indicate an outcome. Not being bound by a theory, the signatures can be used to deconvolute the network of cells present in a particular pathological condition. Not being bound by a theory the presence of specific cells and cell subtypes are indicative of a particular response to treatment, such as including increased or decreased susceptibility to treatment. The signature may indicate the presence of one particular cell type. In one embodiment, the novel signatures are used to detect multiple cell states or hierarchies that occur in subpopulations of immune cells that are linked to particular pathological condition (e.g., inflammation), or linked to a particular outcome or progression of the disease (e.g., autoimmunity), or linked to a particular response to treatment of the disease.


The signature according to certain embodiments of the present invention may comprise or consist of one or more genes, proteins and/or epigenetic elements, such as for instance 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of two or more genes, proteins and/or epigenetic elements, such as for instance 2, 3, 4, 5, 6, 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of three or more genes, proteins and/or epigenetic elements, such as for instance 3, 4, 5, 6, 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of four or more genes, proteins and/or epigenetic elements, such as for instance 4, 5, 6, 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of five or more genes, proteins and/or epigenetic elements, such as for instance 5, 6, 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of six or more genes, proteins and/or epigenetic elements, such as for instance 6, 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of seven or more genes, proteins and/or epigenetic elements, such as for instance 7, 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of eight or more genes, proteins and/or epigenetic elements, such as for instance 8, 9, 10 or more. In certain embodiments, the signature may comprise or consist of nine or more genes, proteins and/or epigenetic elements, such as for instance 9, 10 or more. In certain embodiments, the signature may comprise or consist of ten or more genes, proteins and/or epigenetic elements, such as for instance 10, 11, 12, 13, 14, 15, or more. It is to be understood that a signature according to the invention may for instance also include genes or proteins as well as epigenetic elements combined.


It is to be understood that “differentially expressed” genes/proteins include genes/proteins which are up- or down-regulated as well as genes/proteins which are turned on or off. When referring to up-or down-regulation, in certain embodiments, such up- or down-regulation is preferably at least two-fold, such as two-fold, three-fold, four-fold, five-fold, or more, such as for instance at least ten-fold, at least 20-fold, at least 30-fold, at least 40-fold, at least 50-fold, or more. Alternatively, or in addition, differential expression may be determined based on common statistical tests, as is known in the art.


As discussed herein, differentially expressed genes/proteins, or differential epigenetic elements may be differentially expressed on a single cell level, or may be differentially expressed on a cell population level. Preferably, the differentially expressed genes/proteins or epigenetic elements as discussed herein, such as constituting the gene signatures as discussed herein, when as to the cell population level, refer to genes that are differentially expressed in all or substantially all cells of the population (such as at least 80%, preferably at least 90%, such as at least 95% of the individual cells). This allows one to define a particular subpopulation of tumor cells. As referred to herein, a “subpopulation” of cells preferably refers to a particular subset of cells of a particular cell type which can be distinguished or are uniquely identifiable and set apart from other cells of this cell type. The cell subpopulation may be phenotypically characterized, and is preferably characterized by the signature as discussed herein. A cell (sub)population as referred to herein may constitute of a (sub)population of cells of a particular cell type characterized by a specific cell state.


When referring to induction, or alternatively suppression of a particular signature, preferable is meant induction or alternatively suppression (or upregulation or downregulation) of at least one gene/protein and/or epigenetic element of the signature, such as for instance at least two, at least three, at least four, at least five, at least six, or all genes/proteins and/or epigenetic elements of the signature.


As used herein, all gene name symbols refer to the gene as commonly known in the art. The examples described herein that refer to the mouse gene names are to be understood to also encompasses human genes, as well as genes in any other organism (e.g., homologous, orthologous genes). Mouse gene symbols are generally italicized, with only the first letter in upper-case (e.g., 1123). Mouse protein symbols are generally not italicized, and all letters are in upper-case (e.g., IL-23). As used herein mouse gene symbols may be shown with only the first letter in upper-case and not italicized (e.g., 11123). Any reference to the gene symbol is a reference made to the entire gene or variants of the gene. Any reference to the gene symbol is also a reference made to the gene product (e.g., protein). The term, homolog, may apply to the relationship between genes separated by the event of speciation (e.g., ortholog). Orthologs are genes in different species that evolved from a common ancestral gene by speciation. Normally, orthologs retain the same function in the course of evolution. Gene symbols may be those referred to by the HUGO Gene Nomenclature Committee (HGNC) or National Center for Biotechnology Information (NCBI). The signature as described herein may encompass any of the genes described herein.


Functional T Cell Immune States

The present invention relates to immune cell balance and function, in particular Th1 cell pathogenicity or non-pathogenicty. In general, aberrant immune balance can lead to autoimmunity when the immune response is too strong and cancer when the immune response is suppressed. An immune response can include the interaction of several immune cell types and different immune responses can be mediated by specific immune cells. In certain embodiments, T cells can affect the overall immune state, such as other immune cells in proximity.


The term “immune cell” as used throughout this specification generally encompasses any cell derived from a hematopoietic stem cell that plays a role in the immune response. The term is intended to encompass immune cells both of the innate or adaptive immune system. The immune cell as referred to herein may be a leukocyte, at any stage of differentiation (e.g., a stem cell, a progenitor cell, a mature cell) or any activation stage. Immune cells include lymphocytes (such as natural killer cells, T-cells (including, e.g., thymocytes, Th or Tc; Th1, Th2, Th17, Thαβ, CD4+, CD8+, effector Th, memory Th, regulatory Th, CD4+/CD8+ thymocytes, CD4−/CD8− thymocytes, γδ T cells, etc.) or B-cells (including, e.g., pro-B cells, early pro-B cells, late pro-B cells, pre-B cells, large pre-B cells, small pre-B cells, immature or mature B-cells, producing antibodies of any isotype, T1 B-cells, T2, B-cells, naïve B-cells, GC B-cells, plasmablasts, memory B-cells, plasma cells, follicular B-cells, marginal zone B-cells, B-1 cells, B-2 cells, regulatory B cells, etc.), such as for instance, monocytes (including, e.g., classical, non-classical, or intermediate monocytes), (segmented or banded) neutrophils, eosinophils, basophils, mast cells, histiocytes, microglia, including various subtypes, maturation, differentiation, or activation stages, such as for instance hematopoietic stem cells, myeloid progenitors, lymphoid progenitors, myeloblasts, promyelocytes, myelocytes, metamyelocytes, monoblasts, promonocytes, lymphoblasts, prolymphocytes, small lymphocytes, macrophages (including, e.g., Kupffer cells, stellate macrophages, M1 or M2 macrophages), (myeloid or lymphoid) dendritic cells (including, e.g., Langerhans cells, conventional or myeloid dendritic cells, plasmacytoid dendritic cells, mDC-1, mDC-2, Mo-DC, HP-DC, veiled cells), granulocytes, polymorphonuclear cells, antigen-presenting cells (APC), etc.


As used throughout this specification, “immune response” refers to a response by a cell of the immune system, such as a B cell, T cell (CD4+ or CD8+), regulatory T cell, antigen-presenting cell, dendritic cell, monocyte, macrophage, NKT cell, NK cell, basophil, eosinophil, or neutrophil, to a stimulus. In some embodiments, the response is specific for a particular antigen (an “antigen-specific response”), and refers to a response by a CD4 T cell, CD8 T cell, or B cell via their antigen-specific receptor. In some embodiments, an immune response is a T cell response, such as a CD4+ response or a CD8+ response. Such responses by these cells can include, for example, cytotoxicity, proliferation, cytokine or chemokine production, trafficking, or phagocytosis, and can be dependent on the nature of the immune cell undergoing the response.


T cell response refers more specifically to an immune response in which T cells directly or indirectly mediate or otherwise contribute to an immune response in a subject. T cell-mediated response may be associated with cell mediated effects, cytokine mediated effects, and even effects associated with B cells if the B cells are stimulated, for example, by cytokines secreted by T cells. By means of an example but without limitation, effector functions of NMC class I restricted Cytotoxic T lymphocytes (CTLs), may include cytokine and/or cytolytic capabilities, such as lysis of target cells presenting an antigen peptide recognized by the T cell receptor (naturally-occurring TCR or genetically engineered TCR, e.g., chimeric antigen receptor, CAR), secretion of cytokines, preferably IFN gamma, TNF alpha and/or or more immunostimulatory cytokines, such as IL-2, and/or antigen peptide-induced secretion of cytotoxic effector molecules, such as granzymes, perforins or granulysin. By means of example but without limitation, for NMC class II restricted T helper (Th) cells, effector functions may be antigen peptide-induced secretion of cytokines, preferably, IFN gamma, TNF alpha, IL-4, IL5, IL-10, and/or IL-2. By means of example but without limitation, for T regulatory (Treg) cells, effector functions may be antigen peptide-induced secretion of cytokines, preferably, IL-10, IL-35, and/or TGF-beta. B cell response refers more specifically to an immune response in which B cells directly or indirectly mediate or otherwise contribute to an immune response in a subject. Effector functions of B cells may include in particular production and secretion of antigen-specific antibodies by B cells (e.g., polyclonal B cell response to a plurality of the epitopes of an antigen (antigen-specific antibody response)), antigen presentation, and/or cytokine secretion.


During persistent immune activation, such as during uncontrolled tumor growth or chronic infections, subpopulations of immune cells, particularly of CD8+ or CD4+ T cells, become compromised to different extents with respect to their cytokine and/or cytolytic capabilities. Such immune cells, particularly CD8+ or CD4+ T cells, are commonly referred to as “dysfunctional” or as “functionally exhausted” or “exhausted”. As used herein, the term “dysfunctional” or “functional exhaustion” refer to a state of a cell where the cell does not perform its usual function or activity in response to normal input signals, and includes refractivity of immune cells to stimulation, such as stimulation via an activating receptor or a cytokine. Such a function or activity includes, but is not limited to, proliferation (e.g., in response to a cytokine, such as IFN-gamma) or cell division, entrance into the cell cycle, cytokine production, cytotoxicity, migration and trafficking, phagocytotic activity, or any combination thereof. Normal input signals can include, but are not limited to, stimulation via a receptor (e.g., T cell receptor, B cell receptor, co-stimulatory receptor). Unresponsive immune cells can have a reduction of at least 10%, 20%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, or even 100% in cytotoxic activity, cytokine production, proliferation, trafficking, phagocytotic activity, or any combination thereof, relative to a corresponding control immune cell of the same type. In some particular embodiments of the aspects described herein, a cell that is dysfunctional is a CD8+ T cell that expresses the CD8+ cell surface marker. Such CD8+ cells normally proliferate and produce cell killing enzymes, e.g., they can release the cytotoxins perforin, granzymes, and granulysin. However, exhausted/dysfunctional T cells do not respond adequately to TCR stimulation, and display poor effector function, sustained expression of inhibitory receptors and a transcriptional state distinct from that of functional effector or memory T cells. Dysfunction/exhaustion of T cells thus prevents optimal control of infection and tumors. Exhausted/dysfunctional immune cells, such as T cells, such as CD8+ T cells, may produce reduced amounts of IFN-gamma, TNF-alpha and/or one or more immunostimulatory cytokines, such as IL-2, compared to functional immune cells. Exhausted/dysfunctional immune cells, such as T cells, such as CD8+ T cells, may further produce (increased amounts of) one or more immunosuppressive transcription factors or cytokines, such as IL-10 and/or Foxp3, compared to functional immune cells, thereby contributing to local immunosuppression. Dysfunctional CD8+ T cells can be both protective and detrimental against disease control. As used herein, a “dysfunctional immune state” refers to an overall suppressive immune state in a subject or microenvironment of the subject (e.g., tumor microenvironment). For example, increased IL-10 production leads to suppression of other immune cells in a population of immune cells.


CD8+ T cell function is associated with their cytokine profiles. It has been reported that effector CD8+ T cells with the ability to simultaneously produce multiple cytokines (polyfunctional CD8+ T cells) are associated with protective immunity in patients with controlled chronic viral infections as well as cancer patients responsive to immune therapy (Spranger et al., 2014, J. Immunother. Cancer, vol. 2, 3). In the presence of persistent antigen CD8+ T cells were found to have lost cytolytic activity completely over time (Moskophidis et al., 1993, Nature, vol. 362, 758-761). It was subsequently found that dysfunctional T cells can differentially produce IL-2, TNFa and IFNg in a hierarchical order (Wherry et al., 2003, J. Virol., vol. 77, 4911-4927). Decoupled dysfunctional and activated CD8+ cell states have also been described (see, e.g., Singer, et al. (2016). A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells. Cell 166, 1500-1511 e1509; WO/2017/075478; and WO/2018/049025).


The invention provides compositions and methods for modulating T cell balance, in particular Th1 cell pathogenicity (i.e., balance between pathogenic and non-pathogenic Th1 cells). The invention provides T cell modulating agents that modulate T cell balance. For example, in some embodiments, the invention provides T cell modulating agents and methods of using these T cell modulating agents to regulate, influence or otherwise impact the level of and/or balance of Th1 cells. For example, in some embodiments, the invention provides T cell modulating agents and methods of using these T cell modulating agents to regulate, influence or otherwise impact the level of and/or balance between Th1 activity and inflammatory potential. As used herein, terms such as “Th1 cell” and/or “Th1 phenotype” and all grammatical variations thereof refer to a differentiated T helper cell that expresses interferon gamma (IFNγ). Further, Th1 cells are characterized as expressing IFN-γ, IL-2, lymphotoxin (LT) and the master transcription factor T-bet but do not produce IL-17A, the signature cytokine of Th17 cells.


In certain embodiments, Th17 balance is modified in combination with Th1 cells. As used herein, terms such as “Th17 cell” and/or “Th17 phenotype” and all grammatical variations thereof refer to a differentiated T helper cell that expresses one or more cytokines selected from the group the consisting of interleukin 17A (IL-17A), interleukin 17F (IL-17F), and interleukin 17A/F heterodimer (IL17-AF). As used herein, terms such as “Th2 cell” and/or “Th2 phenotype” and all grammatical variations thereof refer to a differentiated T helper cell that expresses one or more cytokines selected from the group the consisting of interleukin 4 (IL-4), interleukin 5 (IL-5) and interleukin 13 (IL-13). As used herein, terms such as “Treg cell” and/or “Treg phenotype” and all grammatical variations thereof refer to a differentiated T cell that expresses Foxp3.


Depending on the cytokines used for differentiation, in vitro polarized Th17 cells can either cause severe autoimmune responses upon adoptive transfer (‘pathogenic Th17 cells’) or have little or no effect in inducing autoimmune disease (‘non-pathogenic cells’) (Ghoreschi et al., 2010; and Lee et al., 2012 “Induction and molecular signature of pathogenic Th17 cells,” Nature Immunology, vol. 13(10): 991-999). In vitro differentiation of naïve CD4 T cells in the presence of TGF-β1+IL-6 induces an IL-17A and IL-10 producing population of Th17 cells, that are generally nonpathogenic, whereas activation of naïve T cells in the presence of IL-1β+IL-6+IL-23 or TGF-β3+IL-6 induces a T cell population that produces IL-17A and IFN-γ, and are potent inducers of autoimmune disease induction (Ghoreschi et al., 2010, Lee et al., 2012).


As used herein, terms such as “pathogenic Th17 cell” and/or “pathogenic Th17 phenotype” and all grammatical variations thereof refer to Th17 cells that, exhibit a distinct pathogenic signature where one or more of the following genes or products of these genes is upregulated in Th17 cells: Cxcl3, Il22, Il3, Ccl4, Gzmb, Lrmp, Cc15, Casp1, Csf2, Ccl3, Tbx21, Icos, Il7r, Stat4, Lgals3 or Lag3. In certain embodiments, the pathogenic signature is elevated in TGF-β3-induced Th17 cells as compared to TGF-β1-induced Th17 cells. As used herein, terms such as “non-pathogenic Th17 cell” and/or “non-pathogenic Th17 phenotype” and all grammatical variations thereof refer to Th17 cells that exhibit a distinct non-pathogenic signature where one or more of the following genes or products of these genes is up-regulated in Th17 cells: Il6st, Il1rn, lkzf3, Maf, Ahr, Il9 or Il10. In certain embodiments, the non-pathogenic signature is elevated in TGF-β1-induced Th17 cells as compared to TGF-β3-induced Th17 cells. In certain embodiments, when induced in the presence of TGF-β3, Th17 cells express a decreased level of one or more genes selected from IL6st, IL1rn, Ikzf3, Maf, Ahr, IL9 and IL10, as compared to the level of expression in TGF-β3-induced Th17 cells.


A dynamic regulatory network controls Th17 differentiation (See e.g., Yosef et al., Dynamic regulatory network controlling Th17 cell differentiation, Nature, vol. 496: 461-468 (2013); Wang et al., CD5L/AIM Regulates Lipid Biosynthesis and Restrains Th17 Cell Pathogenicity, Cell Volume 163, Issue 6, p 1413-1427, 3 Dec. 2015; Gaublomme et al., Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity, Cell Volume 163, Issue 6, p 1400-1412, 3 Dec. 2015; and International publication numbers WO2016138488A2, WO2015130968, WO/2012/048265, WO/2014/145631 and WO/2014/134351, the contents of which are hereby incorporated by reference in their entirety).


Diseases

In certain embodiments, diseases or conditions are treated, monitored or detected. In certain embodiments, diseases relevant to the present invention are caused by pathogenic Th1 cells or are capable of being controlled by pathogenic Th1 cells. In certain embodiments, the diseases are associated with IL-23 or IL-23R.


In certain embodiments, the diseases are associated with IL-23R by genome wide association studies (GWAS) (e.g., Duerr R H, Taylor K D, Brant S R, et al. A genome-wide association study identifies TL23R as an inflammatory bowel disease gene. Science. 2006; 314(5804):1461-1463; Zhu W, Deng Y, Zhou X. Multiple Membrane Transporters and Some Immune Regulatory Genes are Major Genetic Factors to Gout. Open Rheumatol J. 2018; 12:94-113; Peng L L, Wang Y, Zhu F L, Xu W D, Ji X L, Ni J. IL-23R mutation is associated with ulcerative colitis: A systemic review and meta-analysis. Oncotarget. 2017; 8(3):4849-4863; Zhang F, Liu H, Chen S, et al. Identification of two new loci at IL23R and RAB32 that influence susceptibility to leprosy. Nat Genet. 2011; 43(12):1247-1251; Mizuki N, Meguro A, Ota M, et al. Genome-wide association studies identify IL23R-IL12RB2 and IL10 as Behçet's disease susceptibility loci. Nat Genet. 2010; 42(8):703-706; and Remmers E F, Cosan F, Kirino Y, et al. Genome-wide association study identifies variants in the MHC class I, IL10, and IL23R-IL12RB2 regions associated with Behçet's disease. Nat Genet. 2010; 42(8):698-702). For example, shifting Th1 cell pathogenicity may be used to treat ankylosing spondylitis, psoriasis, ulcerative colitis, Crohn's disease, sclerosing cholangitis, inflammatory bowel disease (IBD), adolescent idiopathic scoliosis, autoimmune thyroid disease, type I diabetes mellitus, Common variable immunodeficiency, celiac disease, juvenile idiopathic arthritis, systemic lupus erythematosus, malaria, psoriatic arthritis, anterior uveitis, type II diabetes mellitus, psoriasis vulgaris or tuberculosis (see, e.g., Buniello, et al. The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019. Nucleic Acids Research, 2019, Vol. 47 (Database issue): D1005-D1012).


In certain embodiments, autoimmune or inflammatory diseases are treated, monitored or detected. As used throughout the present specification, the terms “autoimmune disease” or “autoimmune disorder” used interchangeably refer to a diseases or disorders caused by an immune response against a self-tissue or tissue component (self-antigen) and include a self-antibody response and/or cell-mediated response. The terms encompass organ-specific autoimmune diseases, in which an autoimmune response is directed against a single tissue, as well as non-organ specific autoimmune diseases, in which an autoimmune response is directed against a component present in two or more, several or many organs throughout the body. Examples of autoimmune diseases include but are not limited to acute disseminated encephalomyelitis (ADEM); Addison's disease; ankylosing spondylitis; antiphospholipid antibody syndrome (APS); aplastic anemia; autoimmune gastritis; autoimmune hepatitis; autoimmune thrombocytopenia; Behçet's disease; coeliac disease; dermatomyositis; diabetes mellitus type I; Goodpasture's syndrome; Graves' disease; Guillain-Barre syndrome (GBS); Hashimoto's disease; idiopathic thrombocytopenic purpura; inflammatory bowel disease (IBD) including Crohn's disease and ulcerative colitis; mixed connective tissue disease; multiple sclerosis (MS); myasthenia gravis; opsoclonus myoclonus syndrome (OMS); optic neuritis; Ord's thyroiditis; pemphigus; pernicious anaemia; polyarteritis nodosa; polymyositis; primary biliary cirrhosis; primary myoxedema; psoriasis; rheumatic fever; rheumatoid arthritis; Reiter's syndrome; scleroderma; Sjögren's syndrome; systemic lupus erythematosus; Takayasu's arteritis; temporal arteritis; vitiligo; warm autoimmune hemolytic anemia; or Wegener's granulomatosis.


Examples of inflammatory diseases or disorders include, but are not limited to, asthma, allergy, allergic rhinitis, allergic airway inflammation, atopic dermatitis (AD), chronic obstructive pulmonary disease (COPD), inflammatory bowel disease (IBD), Irritable bowel syndrome (IBS), multiple sclerosis, arthritis, psoriasis, eosinophilic esophagitis, eosinophilic pneumonia, eosinophilic psoriasis, hypereosinophilic syndrome, graft-versus-host disease, uveitis, cardiovascular disease, pain, multiple sclerosis, lupus, vasculitis, chronic idiopathic urticaria and Eosinophilic Granulomatosis with Polyangiitis (Churg-Strauss Syndrome).


In certain embodiments, cancer is treated by increasing Th1 pathogenicity or a cancer treatment is monitored by detecting Th1 pathogenicity. The cancer may include, without limitation, liquid tumors such as leukemia (e.g., acute leukemia, acute lymphocytic leukemia, acute myelocytic leukemia, acute myeloblastic leukemia, acute promyelocytic leukemia, acute myelomonocytic leukemia, acute monocytic leukemia, acute erythroleukemia, chronic leukemia, chronic myelocytic leukemia, chronic lymphocytic leukemia), polycythemia vera, lymphoma (e.g., Hodgkin's disease, non-Hodgkin's disease), Waldenstrom's macroglobulinemia, heavy chain disease, or multiple myeloma.


The cancer may include, without limitation, solid tumors such as sarcomas and carcinomas. Examples of solid tumors include, but are not limited to fibrosarcoma, myxosarcoma, liposarcoma, chondrosarcoma, osteogenic sarcoma, chordoma, angiosarcoma, endotheliosarcoma, lymphangiosarcoma, lymphangioendotheliosarcoma, synovioma, mesothelioma, Ewing's tumor, leiomyosarcoma, rhabdomyosarcoma, squamous cell carcinoma, basal cell carcinoma, adenocarcinoma, sweat gland carcinoma, sebaceous gland carcinoma, papillary carcinoma, papillary adenocarcinomas, cystadenocarcinoma, medullary carcinoma, epithelial carcinoma, bronchogenic carcinoma, hepatoma, colorectal cancer (e.g., colon cancer, rectal cancer), anal cancer, pancreatic cancer (e.g., pancreatic adenocarcinoma, islet cell carcinoma, neuroendocrine tumors), breast cancer (e.g., ductal carcinoma, lobular carcinoma, inflammatory breast cancer, clear cell carcinoma, mucinous carcinoma), ovarian carcinoma (e.g., ovarian epithelial carcinoma or surface epithelial-stromal tumour including serous tumour, endometrioid tumor and mucinous cystadenocarcinoma, sex-cord-stromal tumor), prostate cancer, liver and bile duct carcinoma (e.g., hepatocelluar carcinoma, cholangiocarcinoma, hemangioma), choriocarcinoma, seminoma, embryonal carcinoma, kidney cancer (e.g., renal cell carcinoma, clear cell carcinoma, Wilm's tumor, nephroblastoma), cervical cancer, uterine cancer (e.g., endometrial adenocarcinoma, uterine papillary serous carcinoma, uterine clear-cell carcinoma, uterine sarcomas and leiomyosarcomas, mixed mullerian tumors), testicular cancer, germ cell tumor, lung cancer (e.g., lung adenocarcinoma, squamous cell carcinoma, large cell carcinoma, bronchioloalveolar carcinoma, non-small-cell carcinoma, small cell carcinoma, mesothelioma), bladder carcinoma, signet ring cell carcinoma, cancer of the head and neck (e.g., squamous cell carcinomas), esophageal carcinoma (e.g., esophageal adenocarcinoma), tumors of the brain (e.g., glioma, glioblastoma, astrocytoma, medulloblastoma, craniopharyngioma, ependymoma, pinealoma, hemangioblastoma, acoustic neuroma, oligodenroglioma, schwannoma, meningioma), neuroblastoma, retinoblastoma, neuroendocrine tumor, melanoma, cancer of the stomach (e.g., stomach adenocarcinoma, gastrointestinal stromal tumor), or carcinoids. Lymphoproliferative disorders are also considered to be proliferative diseases.


In Vitro Differentiated Pathogenic Th1 Cells

In certain embodiments, pathogenic Th1 cells can be obtained by differentiating naïve CD4+ T cells in vitro. The naïve T cells may be obtained from a healthy donor subject. The naïve T cells may be obtained from a subject suffering from an aberrant immune response. The naïve T cells may be obtained from a subject suffering from cancer. The naïve T cells may be obtained from an animal model, such as a mouse model. In certain embodiments, the mouse model is a model of any disease described herein. T cells may be obtained from the spleen or lymph nodes. The T cells may be obtained from a blood sample. CD4+ T cells can be enriched using any method commonly used in the art, such as microbeads. Naïve CD4+ T cells can be isolated using any method known in the art, such as cell sorting. In certain embodiments, naïve CD4+ T cells (CD4+CD44lowCD62LhighCD25) can be isolated by fluorescence-activated cell sorting (FACS). In certain embodiments, naïve CD4+ T cells are activated (e.g., with anti-CD3 and anti-CD28 antibodies). In certain embodiments, naïve CD4+ T cells are differentiated with cytokines. In certain embodiments, pathogenic Th1 cells are obtained by differentiating with IL-12 and IL-21. In certain embodiments, pathogenic Th1 cells are obtained by differentiating with IL-12, IL-21 and IL-23. Recombinant cytokines are commercially available.


The differentiated pathogenic Th1 cells may be used for various applications described further herein. For example, in methods of screening for agents capable of shifting Th1 pathogenicity or for adoptive transfer. In certain embodiments, adoptively transferred pathogenic Th1 cells can be used to enhance anti-tumor immunity. In certain embodiments, the Th1 cells are specific for a tumor antigen as described herein.


Therapeutic Methods

In certain embodiments, shifting Th1 pathogenicity can be used in a therapeutic method (i.e., treatment) to decrease or increase an immune response. In certain embodiments, autoimmune diseases are treated by specifically targeting pathogenic Th1 cells or decreasing pathogenic Th1 cells. In certain embodiments, cancer is treated by specifically targeting Th1 cells or increasing pathogenic Th1 cells. Targeting Th1 cells can be performed by targeting specific pathogenic Th1 cell programs or markers, as described herein. In certain embodiments, surface markers are targeted. In certain embodiments, CD160 expression or activity is inhibited to decrease Th1 pathogenicity. In certain embodiments, CD160 expression or activity is enhanced or activated to increase Th1 pathogenicity. In certain embodiments, one or markers selected from CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW is targeted by one or more therapeutic agents. In certain embodiments, Th1 cells are targeted with one or more therapeutic agents. In certain embodiments, small molecules may be used to inhibit a target that has enzymatic activity. In certain embodiments, binding molecules, such as antibodies, are used to target surface proteins.


As used herein, “treatment” or “treating,” or “palliating” or “ameliorating” are used interchangeably. These terms refer to an approach for obtaining beneficial or desired results including but not limited to a therapeutic benefit and/or a prophylactic benefit. By therapeutic benefit is meant any therapeutically relevant improvement in or effect on one or more diseases, conditions, or symptoms under treatment. For prophylactic benefit, the compositions may be administered to a subject at risk of developing a particular disease, condition, or symptom, or to a subject reporting one or more of the physiological symptoms of a disease, even though the disease, condition, or symptom may not have yet been manifested. As used herein “treating” includes ameliorating, curing, preventing it from becoming worse, slowing the rate of progression, or preventing the disorder from re-occurring (i.e., to prevent a relapse).


In certain embodiments, diabetes is treated. Type 1 diabetes is an autoimmune disease where the insulin-producing beta cells in the pancreas are wrongly detected as foreign and destroyed by the immune system (e.g., pathogenic Th1 cells). In certain embodiments, Type I diabetes can be treated at two main stages of the disease process—prior to clinical onset but after the appearance of islet autoantibodies (secondary prevention) and immediately after diagnosis (intervention) (see, e.g., Staeva-Vieira T, Peakman M, von Herrath M. Translational mini-review series on type 1 diabetes: Immune-based therapeutic approaches for type 1 diabetes [published correction appears in Clin Exp Immunol. 2007 July; 149(1):203]. Clin Exp Immunol. 2007; 148(1):17-31). At the intervention stage there is still residual beta cell mass (about 15-20%). Id.


In certain embodiments, IBD is treated by targeting pathogenic Th1 cells. Inflammatory bowel disease (IBD) is a chronic disabling inflammatory process that affects mainly the gastrointestinal tract and may present associated extraintestinal manifestations (see, e.g., Catalan-Serra I, Brenna Ø. Immunotherapy in inflammatory bowel disease: Novel and emerging treatments. Hum Vaccin Immunother. 2018; 14(11):2597-2611). IBD includes both ulcerative colitis (UC) and Crohn's disease (CD). Id. The IL-23 pathway is altered in both conditions. Id Current pharmacological treatments used in clinical practice like thiopurines or anti-TNF are effective but can produce significant side effects and their efficacy may diminish over time. Id. The current treatment of IBD includes mesalazine (oral and rectal formulations), glucocorticoids (conventional and other forms like budesonide or beclomethasone), antibiotics (typically ciprofloxacine and metronidazole), immunosuppressants (mostly azathioprine/6-mercaptopurine or methotrexate) and anti-TNF agents (infliximab, adalimumab, certolizumab pegol and golimumab). Recently, the anti-integrin antibody vedolizumab and the antibody against IL-12/23 ustekinumab have been approved for IBD. Id. In certain embodiments, targeting pathogenic Th1 cells can be used to control inflammation in IBD without producing significant side effects. In certain embodiments, the treatment as described herein is administered in combination with the current treatments, such that side effects are diminished. In certain embodiments, the standard doses can be decreased in such combination treatments.


In certain embodiments, the present invention provides for one or more therapeutic agents against one or more of the targets identified. In certain embodiments, the one or more agents comprises a small molecule inhibitor, small molecule degrader (e.g., ATTEC, AUTAC, LYTAC, or PROTAC), genetic modifying agent, antibody, antibody fragment, antibody-like protein scaffold, aptamer, protein, or any combination thereof.


The terms “therapeutic agent”, “therapeutic capable agent” or “treatment agent” are used interchangeably and refer to a molecule or compound that confers some beneficial effect upon administration to a subject. The beneficial effect includes enablement of diagnostic determinations; amelioration of a disease, symptom, disorder, or pathological condition; reducing or preventing the onset of a disease, symptom, disorder or condition; and generally counteracting a disease, symptom, disorder or pathological condition.


In certain embodiments, the therapeutic agents are administered in an effective amount or therapeutically effective amount. The term “effective amount” or “therapeutically effective amount” refers to the amount of an agent that is sufficient to effect beneficial or desired results. The therapeutically effective amount may vary depending upon one or more of: the subject and disease condition being treated, the weight and age of the subject, the severity of the disease condition, the manner of administration and the like, which can readily be determined by one of ordinary skill in the art. The term also applies to a dose that will provide an image for detection by any one of the imaging methods described herein. The specific dose may vary depending on one or more of: the particular agent chosen, the dosing regimen to be followed, whether it is administered in combination with other compounds, timing of administration, the tissue to be imaged, and the physical delivery system in which it is carried.


In certain embodiments, an agent against one of the targets is used in combination with a treatment already be known or used clinically. In certain embodiments, targeting the combination may require less of the agent as compared to the current standard of care and provide for less toxicity and improved treatment. The term “standard of care” as used herein refers to the current treatment that is accepted by medical experts as a proper treatment for a certain type of disease and that is widely used by healthcare professionals. Standard of care is also called best practice, standard medical care, and standard therapy.


In certain embodiments, the agents are used to modulate cell types in vivo. In certain embodiments, the agents are used to modulate cell types in vitro. For example, the agents may be used to modulate cells for adoptive cell transfer.


CD160

In certain embodiments, CD160 is targeted for shifting Th1 cell pathogenicity. In certain embodiments, inhibiting CD160 reduces Th1 pathogenicity and enhancing CD160 increases Th1 pathogenicity. As used herein CD160 (also known as, BY55, NK1, NK28) refers to the CD160 molecule. Exemplary sequences include NCBI accession numbers NM_007053.4 and NP_008984.1. CD160 is a glycoprotein and ligand for Herpesvirus entry mediator (HVEM), also known as tumor necrosis factor receptor superfamily member 14 (TNFRSF14), and considered a proposed immune checkpoint inhibitor with anti-cancer activity along with anti-PD-1 antibodies (Stecher C, Battin C, Leitner J, et al. PD-1 Blockade Promotes Emerging Checkpoint Inhibitors in Enhancing T Cell Responses to Allogeneic Dendritic Cells. Front Immunol. 2017; 8:572). Blocking checkpoint inhibitors enhances an immune response. The present invention shows for the first time that CD160 is necessary for Th1 cell pathogenicity and inhibiting CD160 decreases an immune response. Stecher et al. discloses monoclonal-blocking antibodies for CD160 that can be used as a therapeutic to decrease inflammation or autoimmunity caused by pathogenic Th1 cells. Other non-limiting CD160 antibodies applicable to the present invention have been described (Menguy T, Briaux A, Jeunesse E, et al. Anti-CD160, Alone or in Combination With Bevacizumab, Is a Potent Inhibitor of Ocular Neovascularization in Rabbit and Monkey Models. Invest Ophthalmol Vis Sci. 2018; 59(7):2687-2698; El-Far M, Pellerin C, Pilote L, et al. CD160 isoforms and regulation of CD4 and CD8 T-cell responses. J Transl Med. 2014; 12:217; U.S. Ser. No. 10/208,124B2; US20200109211A1; US20190256595A1; WO2010084158A1; and US20150004170A1).


GPR18

In certain embodiments, GPR18 is targeted for shifting Th1 cell pathogenicity. In certain embodiments, inhibiting GPR18 reduces Th1 pathogenicity and enhancing GPR18 increases Th1 pathogenicity. As used herein GPR18 refers to the G protein-coupled receptor 18 (also known as, N-Arachidonyl glycine receptor, NAGly receptor). Exemplary sequences include NCBI accession numbers NM_001098200.2, NM_005292.4, NP 001091670.1 and NP_005283.1. Non-limiting GPR18 agonists include PSB-KK-1415, PSB-KD107, PSB-KD477, N-Arachidonoylglycine (NAGly), Abnormal cannabidiol (Abn-CBD), AM-251, Cannabidiol, O-1602, Δ9-Tetrahydrocannabinol (Δ9-THC), Anandamide (N-arachidonoyl ethanolamine, AEA), Arachidonylcyclopropylamide (ACPA), and Resolvin D2 (RvD2). Non-limiting GPR18 antagonists include PSB-CB5, Amauromine, O-1918, and CID-85469571. See, also, Fabisiak A, Fabisiak N, Mokrowiecka A, et al. Novel selective agonist of GPR18, PSB-KK-1415 exerts potent anti-inflammatory and anti-nociceptive activities in animal models of intestinal inflammation and inflammatory pain [published online ahead of print, 2020 Oct. 14]. Neurogastroenterol Motil. 2020; e14003; and Schoeder C T, Mahardhika A B, Drabczynska A, Kied-Kononowicz K, Müller CE. Discovery of Tricyclic Xanthines as Agonists of the Cannabinoid-Activated Orphan G-Protein-Coupled Receptor GPR18. ACS Med Chem Lett. 2020; 11(10):2024-2031.


Antibodies

In certain embodiments, the one or more agent is an antibody. In certain embodiments, an antibody targets one or more surface genes or polypeptides. The term “antibody” is used interchangeably with the term “immunoglobulin” herein, and includes intact antibodies, fragments of antibodies, e.g., Fab, F(ab′)2 fragments, and intact antibodies and fragments that have been mutated either in their constant and/or variable region (e.g., mutations to produce chimeric, partially humanized, or fully humanized antibodies, as well as to produce antibodies with a desired trait, e.g., enhanced binding and/or reduced FcR binding). The term “fragment” refers to a part or portion of an antibody or antibody chain comprising fewer amino acid residues than an intact or complete antibody or antibody chain. Fragments can be obtained via chemical or enzymatic treatment of an intact or complete antibody or antibody chain. Fragments can also be obtained by recombinant means. Exemplary fragments include Fab, Fab′, F(ab′)2, Fabc, Fd, dAb, VHH and scFv and/or Fv fragments.


As used herein, a preparation of antibody protein having less than about 50% of non-antibody protein (also referred to herein as a “contaminating protein”), or of chemical precursors, is considered to be “substantially free.” 40%, 30%, 20%, 10% and more preferably 5% (by dry weight), of non-antibody protein, or of chemical precursors is considered to be substantially free. When the antibody protein or biologically active portion thereof is recombinantly produced, it is also preferably substantially free of culture medium, i.e., culture medium represents less than about 30%, preferably less than about 20%, more preferably less than about 10%, and most preferably less than about 5% of the volume or mass of the protein preparation.


The term “antigen-binding fragment” refers to a polypeptide fragment of an immunoglobulin or antibody that binds antigen or competes with intact antibody (i.e., with the intact antibody from which they were derived) for antigen binding (i.e., specific binding). As such these antibodies or fragments thereof are included in the scope of the invention, provided that the antibody or fragment binds specifically to a target molecule.


It is intended that the term “antibody” encompass any Ig class or any Ig subclass (e.g., the IgG1, IgG2, IgG3, and IgG4 subclassess of IgG) obtained from any source (e.g., humans and non-human primates, and in rodents, lagomorphs, caprines, bovines, equines, ovines, etc.).


The term “Ig class” or “immunoglobulin class”, as used herein, refers to the five classes of immunoglobulin that have been identified in humans and higher mammals, IgG, IgM, IgA, IgD, and IgE. The term “Ig subclass” refers to the two subclasses of IgM (H and L), three subclasses of IgA (IgA1, IgA2, and secretory IgA), and four subclasses of IgG (IgG1, IgG2, IgG3, and IgG4) that have been identified in humans and higher mammals. The antibodies can exist in monomeric or polymeric form; for example, lgM antibodies exist in pentameric form, and IgA antibodies exist in monomeric, dimeric or multimeric form.


The term “IgG subclass” refers to the four subclasses of immunoglobulin class IgG-IgG1, IgG2, IgG3, and IgG4 that have been identified in humans and higher mammals by the heavy chains of the immunoglobulins, VI—74, respectively. The term “single-chain immunoglobulin” or “single-chain antibody” (used interchangeably herein) refers to a protein having a two-polypeptide chain structure consisting of a heavy and a light chain, said chains being stabilized, for example, by interchain peptide linkers, which has the ability to specifically bind antigen. The term “domain” refers to a globular region of a heavy or light chain polypeptide comprising peptide loops (e.g., comprising 3 to 4 peptide loops) stabilized, for example, by p pleated sheet and/or intrachain disulfide bond. Domains are further referred to herein as “constant” or “variable”, based on the relative lack of sequence variation within the domains of various class members in the case of a “constant” domain, or the significant variation within the domains of various class members in the case of a “variable” domain. Antibody or polypeptide “domains” are often referred to interchangeably in the art as antibody or polypeptide “regions”. The “constant” domains of an antibody light chain are referred to interchangeably as “light chain constant regions”, “light chain constant domains”, “CL” regions or “CL” domains. The “constant” domains of an antibody heavy chain are referred to interchangeably as “heavy chain constant regions”, “heavy chain constant domains”, “CH” regions or “CH” domains). The “variable” domains of an antibody light chain are referred to interchangeably as “light chain variable regions”, “light chain variable domains”, “VL” regions or “VL” domains). The “variable” domains of an antibody heavy chain are referred to interchangeably as “heavy chain constant regions”, “heavy chain constant domains”, “VH” regions or “VH” domains).


The term “region” can also refer to a part or portion of an antibody chain or antibody chain domain (e.g., a part or portion of a heavy or light chain or a part or portion of a constant or variable domain, as defined herein), as well as more discrete parts or portions of said chains or domains. For example, light and heavy chains or light and heavy chain variable domains include “complementarity determining regions” or “CDRs” interspersed among “framework regions” or “FRs”, as defined herein.


The term “conformation” refers to the tertiary structure of a protein or polypeptide (e.g., an antibody, antibody chain, domain or region thereof). For example, the phrase “light (or heavy) chain conformation” refers to the tertiary structure of a light (or heavy) chain variable region, and the phrase “antibody conformation” or “antibody fragment conformation” refers to the tertiary structure of an antibody or fragment thereof.


The term “antibody-like protein scaffolds” or “engineered protein scaffolds” broadly encompasses proteinaceous non-immunoglobulin specific-binding agents, typically obtained by combinatorial engineering (such as site-directed random mutagenesis in combination with phage display or other molecular selection techniques). Usually, such scaffolds are derived from robust and small soluble monomeric proteins (such as Kunitz inhibitors or lipocalins) or from a stably folded extra-membrane domain of a cell surface receptor (such as protein A, fibronectin or the ankyrin repeat).


Such scaffolds have been extensively reviewed in Binz et al. (Engineering novel binding proteins from nonimmunoglobulin domains. Nat Biotechnol 2005, 23:1257-1268), Gebauer and Skerra (Engineered protein scaffolds as next-generation antibody therapeutics. Curr Opin Chem Biol. 2009, 13:245-55), Gill and Damle (Biopharmaceutical drug discovery using novel protein scaffolds. Curr Opin Biotechnol 2006, 17:653-658), Skerra (Engineered protein scaffolds for molecular recognition. J Mol Recognit 2000, 13:167-187), and Skerra (Alternative non-antibody scaffolds for molecular recognition. Curr Opin Biotechnol 2007, 18:295-304), and include without limitation affibodies, based on the Z-domain of staphylococcal protein A, a three-helix bundle of 58 residues providing an interface on two of its alpha-helices (Nygren, Alternative binding proteins: Affibody binding proteins developed from a small three-helix bundle scaffold. FEBS J 2008, 275:2668-2676); engineered Kunitz domains based on a small (ca. 58 residues) and robust, disulphide-crosslinked serine protease inhibitor, typically of human origin (e.g., LACI-D1), which can be engineered for different protease specificities (Nixon and Wood, Engineered protein inhibitors of proteases. Curr Opin Drug Discov Dev 2006, 9:261-268); monobodies or adnectins based on the 10th extracellular domain of human fibronectin III (1° F.n3), which adopts an Ig-like beta-sandwich fold (94 residues) with 2-3 exposed loops, but lacks the central disulphide bridge (Koide and Koide, Monobodies: antibody mimics based on the scaffold of the fibronectin type III domain. Methods Mol Biol 2007, 352:95-109); anticalins derived from the lipocalins, a diverse family of eight-stranded beta-barrel proteins (ca. 180 residues) that naturally form binding sites for small ligands by means of four structurally variable loops at the open end, which are abundant in humans, insects, and many other organisms (Skerra, Alternative binding proteins: Anticalins-harnessing the structural plasticity of the lipocalin ligand pocket to engineer novel binding activities. FEBS J 2008, 275:2677-2683); DARPins, designed ankyrin repeat domains (166 residues), which provide a rigid interface arising from typically three repeated beta-turns (Stumpp et al., DARPins: a new generation of protein therapeutics. Drug Discov Today 2008, 13:695-701); avimers (multimerized LDLR-A module) (Silverman et al., Multivalent avimer proteins evolved by exon shuffling of a family of human receptor domains. Nat Biotechnol 2005, 23:1556-1561); and cysteine-rich knottin peptides (Kolmar, Alternative binding proteins: biological activity and therapeutic potential of cystine-knot miniproteins. FEBS J 2008, 275:2684-2690).


“Specific binding” of an antibody means that the antibody exhibits appreciable affinity for a particular antigen or epitope and, generally, does not exhibit significant cross reactivity. “Appreciable” binding includes binding with an affinity of at least 25 μM. Antibodies with affinities greater than 1×107 M−1 (or a dissociation coefficient of 1 μM or less or a dissociation coefficient of 1 nm or less) typically bind with correspondingly greater specificity. Values intermediate of those set forth herein are also intended to be within the scope of the present invention and antibodies of the invention bind with a range of affinities, for example, 100 nM or less, 75 nM or less, 50 nM or less, 25 nM or less, for example 10 nM or less, SnM or less, lnM or less, or in embodiments 500 pM or less, 100 pM or less, 50 pM or less or 25 pM or less. An antibody that “does not exhibit significant crossreactivity” is one that will not appreciably bind to an entity other than its target (e.g., a different epitope or a different molecule). For example, an antibody that specifically binds to a target molecule will appreciably bind the target molecule but will not significantly react with non-target molecules or peptides. An antibody specific for a particular epitope will, for example, not significantly crossreact with remote epitopes on the same protein or peptide. Specific binding can be determined according to any art-recognized means for determining such binding. Preferably, specific binding is determined according to Scatchard analysis and/or competitive binding assays.


As used herein, the term “affinity” refers to the strength of the binding of a single antigen-combining site with an antigenic determinant. Affinity depends on the closeness of stereochemical fit between antibody combining sites and antigen determinants, on the size of the area of contact between them, on the distribution of charged and hydrophobic groups, etc. Antibody affinity can be measured by equilibrium dialysis or by the kinetic BIACORE™ method. The dissociation constant, Kd, and the association constant, Ka, are quantitative measures of affinity.


As used herein, the term “monoclonal antibody” refers to an antibody derived from a clonal population of antibody-producing cells (e.g., B lymphocytes or B cells) which is homogeneous in structure and antigen specificity. The term “polyclonal antibody” refers to a plurality of antibodies originating from different clonal populations of antibody-producing cells which are heterogeneous in their structure and epitope specificity but which recognize a common antigen. Monoclonal and polyclonal antibodies may exist within bodily fluids, as crude preparations, or may be purified, as described herein.


The term “binding portion” of an antibody (or “antibody portion”) includes one or more complete domains, e.g., a pair of complete domains, as well as fragments of an antibody that retain the ability to specifically bind to a target molecule. It has been shown that the binding function of an antibody can be performed by fragments of a full-length antibody. Binding fragments are produced by recombinant DNA techniques, or by enzymatic or chemical cleavage of intact immunoglobulins. Binding fragments include Fab, Fab′, F(ab′)2, Fabc, Fd, dAb, Fv, single chains, single-chain antibodies, e.g., scFv, and single domain antibodies.


“Humanized” forms of non-human (e.g., murine) antibodies are chimeric antibodies that contain minimal sequence derived from non-human immunoglobulin. For the most part, humanized antibodies are human immunoglobulins (recipient antibody) in which residues from a hypervariable region of the recipient are replaced by residues from a hypervariable region of a non-human species (donor antibody) such as mouse, rat, rabbit or nonhuman primate having the desired specificity, affinity, and capacity. In some instances, FR residues of the human immunoglobulin are replaced by corresponding non-human residues. Furthermore, humanized antibodies may comprise residues that are not found in the recipient antibody or in the donor antibody. These modifications are made to further refine antibody performance. In general, the humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the hypervariable regions correspond to those of a non-human immunoglobulin and all or substantially all of the FR regions are those of a human immunoglobulin sequence. The humanized antibody optionally also will comprise at least a portion of an immunoglobulin constant region (Fc), typically that of a human immunoglobulin.


Examples of portions of antibodies or epitope-binding proteins encompassed by the present definition include: (i) the Fab fragment, having VL, CL, VH and CH1 domains; (ii) the Fab′ fragment, which is a Fab fragment having one or more cysteine residues at the C-terminus of the CH1 domain; (iii) the Fd fragment having VH and CH1 domains; (iv) the Fd′ fragment having VH and CH1 domains and one or more cysteine residues at the C-terminus of the CHI domain; (v) the Fv fragment having the VL and VH domains of a single arm of an antibody; (vi) the dAb fragment (Ward et al., 341 Nature 544 (1989)) which consists of a VH domain or a VL domain that binds antigen; (vii) isolated CDR regions or isolated CDR regions presented in a functional framework; (viii) F(ab′)2 fragments which are bivalent fragments including two Fab′ fragments linked by a disulphide bridge at the hinge region; (ix) single chain antibody molecules (e.g., single chain Fv; scFv) (Bird et al., 242 Science 423 (1988); and Huston et al., 85 PNAS 5879 (1988)); (x) “diabodies” with two antigen binding sites, comprising a heavy chain variable domain (VH) connected to a light chain variable domain (VL) in the same polypeptide chain (see, e.g., EP 404,097; WO 93/11161; Hollinger et al., 90 PNAS 6444 (1993)); (xi) “linear antibodies” comprising a pair of tandem Fd segments (VH-Ch1-VH-Ch1) which, together with complementary light chain polypeptides, form a pair of antigen binding regions (Zapata et al., Protein Eng. 8(10):1057-62 (1995); and U.S. Pat. No. 5,641,870).


As used herein, a “blocking” antibody or an antibody “antagonist” is one which inhibits or reduces biological activity of the antigen(s) it binds (e.g., CD160). In certain embodiments, the blocking antibodies or antagonist antibodies or portions thereof described herein completely inhibit the biological activity of the antigen(s).


Antibodies may act as agonists or antagonists of the recognized polypeptides. For example, the present invention includes antibodies which disrupt receptor/ligand interactions either partially or fully. The invention features both receptor-specific antibodies and ligand-specific antibodies. The invention also features receptor-specific antibodies which do not prevent ligand binding but prevent receptor activation. Receptor activation (i.e., signaling) may be determined by techniques described herein or otherwise known in the art. For example, receptor activation can be determined by detecting the phosphorylation (e.g., tyrosine or serine/threonine) of the receptor or of one of its down-stream substrates by immunoprecipitation followed by western blot analysis. In specific embodiments, antibodies are provided that inhibit ligand activity or receptor activity by at least 95%, at least 90%, at least 85%, at least 80%, at least 75%, at least 70%, at least 60%, or at least 50% of the activity in absence of the antibody.


The invention also features receptor-specific antibodies which both prevent ligand binding and receptor activation as well as antibodies that recognize the receptor-ligand complex. Likewise, encompassed by the invention are neutralizing antibodies which bind the ligand and prevent binding of the ligand to the receptor, as well as antibodies which bind the ligand, thereby preventing receptor activation, but do not prevent the ligand from binding the receptor. Further included in the invention are antibodies which activate the receptor. These antibodies may act as receptor agonists, i.e., potentiate or activate either all or a subset of the biological activities of the ligand-mediated receptor activation, for example, by inducing dimerization of the receptor. The antibodies may be specified as agonists, antagonists or inverse agonists for biological activities comprising the specific biological activities of the peptides disclosed herein. The antibody agonists and antagonists can be made using methods known in the art. See, e.g., PCT publication WO 96/40281; U.S. Pat. No. 5,811,097; Deng et al., Blood 92(6):1981-1988 (1998); Chen et al., Cancer Res. 58(16):3668-3678 (1998); Harrop et al., J. Immunol. 161(4):1786-1794 (1998); Zhu et al., Cancer Res. 58(15):3209-3214 (1998); Yoon et al., J. Immunol. 160(7):3170-3179 (1998); Prat et al., J. Cell. Sci. III (Pt2):237-247 (1998); Pitard et al., J. Immunol. Methods 205(2):177-190 (1997); Liautard et al., Cytokine 9(4):233-241 (1997); Carlson et al., J. Biol. Chem. 272(17):11295-11301 (1997); Taryman et al., Neuron 14(4):755-762 (1995); Muller et al., Structure 6(9):1153-1167 (1998); Bartunek et al., Cytokine 8(1):14-20 (1996).


The antibodies as defined for the present invention include derivatives that are modified, i.e., by the covalent attachment of any type of molecule to the antibody such that covalent attachment does not prevent the antibody from generating an anti-idiotypic response. For example, but not by way of limitation, the antibody derivatives include antibodies that have been modified, e.g., by glycosylation, acetylation, pegylation, phosphylation, amidation, derivatization by known protecting/blocking groups, proteolytic cleavage, linkage to a cellular ligand or other protein, etc. Any of numerous chemical modifications may be carried out by known techniques, including, but not limited to specific chemical cleavage, acetylation, formylation, metabolic synthesis of tunicamycin, etc. Additionally, the derivative may contain one or more non-classical amino acids.


Simple binding assays can be used to screen for or detect agents that bind to a target protein, or disrupt the interaction between proteins (e.g., a receptor and a ligand). Because certain targets of the present invention are transmembrane proteins, assays that use the soluble forms of these proteins rather than full-length protein can be used, in some embodiments. Soluble forms include, for example, those lacking the transmembrane domain and/or those comprising the IgV domain or fragments thereof which retain their ability to bind their cognate binding partners. Further, agents that inhibit or enhance protein interactions for use in the compositions and methods described herein, can include recombinant peptido-mimetics.


Detection methods useful in screening assays include antibody-based methods, detection of a reporter moiety, detection of cytokines as described herein, and detection of a gene signature as described herein.


Another variation of assays to determine binding of a receptor protein to a ligand protein is through the use of affinity biosensor methods. Such methods may be based on the piezoelectric effect, electrochemistry, or optical methods, such as ellipsometry, optical wave guidance, and surface plasmon resonance (SPR).


Bispecific Antibodies

In certain embodiments, bispecific antibodies are used to target pathogenic Th1 cells. Bi-specific antigen-binding constructs, e.g., bi-specific antibodies (bsAb) or BiTEs, bind two antigens (see, e.g., Suurs et al., A review of bispecific antibodies and antibody constructs in oncology and clinical challenges. Pharmacol Ther. 2019 September; 201:103-119; and Huehls, et al., Bispecific T cell engagers for cancer immunotherapy. Immunol Cell Biol. 2015 March; 93(3): 290-296). The bi-specific antigen-binding construct includes two antigen-binding polypeptide constructs, e.g., antigen binding domains. In some embodiments, the antigen-binding construct is derived from known antibodies or antigen-binding constructs. In some embodiments, the antigen-binding polypeptide constructs comprise two antigen binding domains that comprise antibody fragments. In some embodiments, the first antigen binding domain and second antigen binding domain each independently comprises an antibody fragment selected from the group of: an scFv, a Fab, and an Fc domain. The antibody fragments may be the same format or different formats from each other. For example, in some embodiments, the antigen-binding polypeptide constructs comprise a first antigen binding domain comprising an scFv and a second antigen binding domain comprising a Fab. In some embodiments, the antigen-binding polypeptide constructs comprise a first antigen binding domain and a second antigen binding domain, wherein both antigen binding domains comprise an scFv. In some embodiments, the first and second antigen binding domains each comprise a Fab. In some embodiments, the first and second antigen binding domains each comprise an Fc domain. Any combination of antibody formats is suitable for the bi-specific antibody constructs disclosed herein.


In certain embodiments, Th1 cells can be engaged to tumor cells. In certain embodiments, two targets are disrupted on a Th1 cell by the bsAb. By means of an example, an agent, such as a bi-specific antibody, capable of specifically binding to a gene product expressed on the cell surface of the Th1 cells and a tumor cell may be used for targeting Th1 cells to tumor cells.


Aptamers

In certain embodiments, the one or more agent is an aptamer. Nucleic acid aptamers are nucleic acid species that have been engineered through repeated rounds of in vitro selection or equivalently, SELEX (systematic evolution of ligands by exponential enrichment) to bind to various molecular targets such as small molecules, proteins, nucleic acids, cells, tissues and organisms. Nucleic acid aptamers have specific binding affinity to molecules through interactions other than classic Watson-Crick base pairing. Aptamers are useful in biotechnological and therapeutic applications as they offer molecular recognition properties similar to antibodies. In addition to their discriminate recognition, aptamers offer advantages over antibodies as they can be engineered completely in a test tube, are readily produced by chemical synthesis, possess desirable storage properties, and elicit little or no immunogenicity in therapeutic applications. In certain embodiments, RNA aptamers may be expressed from a DNA construct. In other embodiments, a nucleic acid aptamer may be linked to another polynucleotide sequence. The polynucleotide sequence may be a double stranded DNA polynucleotide sequence. The aptamer may be covalently linked to one strand of the polynucleotide sequence. The aptamer may be ligated to the polynucleotide sequence. The polynucleotide sequence may be configured, such that the polynucleotide sequence may be linked to a solid support or ligated to another polynucleotide sequence.


Aptamers, like peptides generated by phage display or monoclonal antibodies (“mAbs”), are capable of specifically binding to selected targets and modulating the targets activity, e.g., through binding, aptamers may block their target's ability to function. A typical aptamer is 10-15 kDa in size (30-45 nucleotides), binds its target with sub-nanomolar affinity, and discriminates against closely related targets (e.g., aptamers will typically not bind other proteins from the same gene family). Structural studies have shown that aptamers are capable of using the same types of binding interactions (e.g., hydrogen bonding, electrostatic complementarity, hydrophobic contacts, steric exclusion) that drives affinity and specificity in antibody-antigen complexes.


Aptamers have a number of desirable characteristics for use in research and as therapeutics and diagnostics including high specificity and affinity, biological efficacy, and excellent pharmacokinetic properties. In addition, they offer specific competitive advantages over antibodies and other protein biologics. Aptamers are chemically synthesized and are readily scaled as needed to meet production demand for research, diagnostic or therapeutic applications. Aptamers are chemically robust. They are intrinsically adapted to regain activity following exposure to factors such as heat and denaturants and can be stored for extended periods (>1 yr) at room temperature as lyophilized powders. Not being bound by a theory, aptamers bound to a solid support or beads may be stored for extended periods.


Oligonucleotides in their phosphodiester form may be quickly degraded by intracellular and extracellular enzymes such as endonucleases and exonucleases. Aptamers can include modified nucleotides conferring improved characteristics on the ligand, such as improved in vivo stability or improved delivery characteristics. Examples of such modifications include chemical substitutions at the ribose and/or phosphate and/or base positions. SELEX identified nucleic acid ligands containing modified nucleotides are described, e.g., in U.S. Pat. No. 5,660,985, which describes oligonucleotides containing nucleotide derivatives chemically modified at the 2′ position of ribose, 5 position of pyrimidines, and 8 position of purines, U.S. Pat. No. 5,756,703 which describes oligonucleotides containing various 2′-modified pyrimidines, and U.S. Pat. No. 5,580,737 which describes highly specific nucleic acid ligands containing one or more nucleotides modified with 2′-amino (2′NH), 2′-fluoro (2′-F), and/or 2′-0-methyl (2′-OMe) substituents. Modifications of aptamers may also include, modifications at exocyclic amines, substitution of 4-thiouridine, substitution of 5-bromo or 5-iodo-uracil; backbone modifications, phosphorothioate or allyl phosphate modifications, methylations, and unusual base-pairing combinations such as the isobases isocytidine and isoguanosine. Modifications can also include 3 and 5′ modifications such as capping. As used herein, the term phosphorothioate encompasses one or more non-bridging oxygen atoms in a phosphodiester bond replaced by one or more sulfur atoms. In further embodiments, the oligonucleotides comprise modified sugar groups, for example, one or more of the hydroxyl groups is replaced with halogen, aliphatic groups, or functionalized as ethers or amines. In one embodiment, the 2′-position of the furanose residue is substituted by any of an O-methyl, O-alkyl, O-allyl, S-alkyl, S-allyl, or halo group. Methods of synthesis of 2′-modified sugars are described, e.g., in Sproat, et al., Nucl Acid Res. 19:733-738 (1991); Cotten, et al, Nucl. Acid Res. 19:2629-2635 (1991); and Hobbs, et al, Biochemistry 12:5138-5145 (1973). Other modifications are known to one of ordinary skill in the art. In certain embodiments, aptamers include aptamers with improved off-rates as described in international Patent Publication No. WO 2009012418, “Method for generating aptamers with improved off-rates,” incorporated herein by reference in its entirety. In certain embodiments aptamers are chosen from a library of aptamers. Such libraries include, but are not limited to, those described in Rohloff et al., “Nucleic Acid Ligands With Protein-like Side Chains: Modified Aptamers and Their Use as Diagnostic and Therapeutic Agents,” Molecular Therapy Nucleic Acids (2014) 3, e201. Aptamers are also commercially available (see, e.g., SomaLogic, Inc., Boulder, Colorado). In certain embodiments, the present invention may utilize any aptamer containing any modification as described herein.


Small Molecules

In certain embodiments, the one or more agents is a small molecule. The term “small molecule” refers to compounds, preferably organic compounds, with a size comparable to those organic molecules generally used in pharmaceuticals. The term excludes biological macromolecules (e.g., proteins, peptides, nucleic acids, etc.). Preferred small organic molecules range in size up to about 5000 Da, e.g., up to about 4000, preferably up to 3000 Da, more preferably up to 2000 Da, even more preferably up to about 1000 Da, e.g., up to about 900, 800, 700, 600 or up to about 500 Da. In certain embodiments, the small molecule may act as an antagonist or agonist (e.g., blocking an enzyme active site or activating a receptor by binding to a ligand binding site).


One type of small molecule applicable to the present invention is a degrader molecule (see, e.g., Ding, et al., Emerging New Concepts of Degrader Technologies, Trends Pharmacol Sci. 2020 July; 41(7):464-474). The terms “degrader” and “degrader molecule” refer to all compounds capable of specifically targeting a protein for degradation (e.g., ATTEC, AUTAC, LYTAC, or PROTAC, reviewed in Ding, et al. 2020). Proteolysis Targeting Chimera (PROTAC) technology is a rapidly emerging alternative therapeutic strategy with the potential to address many of the challenges currently faced in modern drug development programs. PROTAC technology employs small molecules that recruit target proteins for ubiquitination and removal by the proteasome (see, e.g., Zhou et al., Discovery of a Small-Molecule Degrader of Bromodomain and Extra-Terminal (BET) Proteins with Picomolar Cellular Potencies and Capable of Achieving Tumor Regression. J. Med. Chem. 2018, 61, 462-481; Bondeson and Crews, Targeted Protein Degradation by Small Molecules, Annu Rev Pharmacol Toxicol. 2017 Jan. 6; 57: 107-123; and Lai et al., Modular PROTAC Design for the Degradation of Oncogenic BCR-ABL Angew Chem Int Ed Engl. 2016 Jan. 11; 55(2): 807-810). In certain embodiments, LYTACs are particularly advantageous for cell surface proteins as described herein (e.g., CD160).


Genetic Modifying Agents

In certain embodiments, the one or more modulating agents may be a genetic modifying agent. The genetic modifying agents may manipulate nucleic acids (e.g., genomic DNA or mRNA). The genetic modulating agent can be used to up- or downregulate expression of a gene either by targeting a nuclease or functional domain to a DNA or RNA sequence. The genetic modifying agent may comprise an RNA-guided nuclease system (e.g., CRISPR system or IscB system), RNAi system, a zinc finger nuclease, a TALE, or a meganuclease.


CRISPR-Cas Modification

In some embodiments, a polynucleotide of the present invention described elsewhere herein can be modified using a CRISPR-Cas and/or Cas-based system (e.g., genomic DNA or mRNA, preferably, for a disease gene). The nucleotide sequence may be or encode one or more components of a CRISPR-Cas system. For example, the nucleotide sequences may be or encode guide RNAs. The nucleotide sequences may also encode CRISPR proteins, variants thereof, or fragments thereof.


In general, a CRISPR-Cas or CRISPR system as used herein and in other documents, such as WO 2014/093622 (PCT/US2013/074667), refers collectively to transcripts and other elements involved in the expression of or directing the activity of CRISPR-associated (“Cas”) genes, including sequences encoding a Cas gene, a tracr (trans-activating CRISPR) sequence (e.g., tracrRNA or an active partial tracrRNA), a tracr-mate sequence (encompassing a “direct repeat” and a tracrRNA-processed partial direct repeat in the context of an endogenous CRISPR system), a guide sequence (also referred to as a “spacer” in the context of an endogenous CRISPR system), or “RNA(s)” as that term is herein used (e.g., RNA(s) to guide Cas, such as Cas9, e.g., CRISPR RNA and transactivating (tracr) RNA or a single guide RNA (sgRNA) (chimeric RNA)) or other sequences and transcripts from a CRISPR locus. In general, a CRISPR system is characterized by elements that promote the formation of a CRISPR complex at the site of a target sequence (also referred to as a protospacer in the context of an endogenous CRISPR system). See, e.g., Shmakov et al. (2015) “Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems”, Molecular Cell, DOI: dx.doi.org/10.1016/j.molcel. 2015.10.008.


CRISPR-Cas systems can generally fall into two classes based on their architectures of their effector molecules, which are each further subdivided by type and subtype. The two classes are Class 1 and Class 2. Class 1 CRISPR-Cas systems have effector modules composed of multiple Cas proteins, some of which form crRNA-binding complexes, while Class 2 CRISPR-Cas systems include a single, multi-domain crRNA-binding protein.


In some embodiments, the CRISPR-Cas system that can be used to modify a polynucleotide of the present invention described herein can be a Class 1 CRISPR-Cas system. In some embodiments, the CRISPR-Cas system that can be used to modify a polynucleotide of the present invention described herein can be a Class 2 CRISPR-Cas system.


Class 1 CRISPR-Cas Systems

In some embodiments, the CRISPR-Cas system that can be used to modify a polynucleotide of the present invention described herein can be a Class 1 CRISPR-Cas system. Class 1 CRISPR-Cas systems are divided into Types I, II, and IV. Makarova et al. 2020. Nat. Rev. 18: 67-83, particularly as described in FIG. 1. Type I CRISPR-Cas systems are divided into 9 subtypes (I-A, I-B, I-C, I-D, I-E, I-F1, I-F2, I-F3, and IG). Makarova et al., 2020. Class 1, Type I CRISPR-Cas systems can contain a Cas3 protein that can have helicase activity. Type III CRISPR-Cas systems are divided into 6 subtypes (III-A, III-B, III-C, III-D, III-E, and III-F). Type III CRISPR-Cas systems can contain a Cas10 that can include an RNA recognition motif called Palm and a cyclase domain that can cleave polynucleotides. Makarova et al., 2020. Type IV CRISPR-Cas systems are divided into 3 subtypes. (IV-A, IV-B, and IV-C). Makarova et al., 2020. Class 1 systems also include CRISPR-Cas variants, including Type I-A, I-B, I-E, I-F and I-U variants, which can include variants carried by transposons and plasmids, including versions of subtype I-F encoded by a large family of Tn7-like transposon and smaller groups of Tn7-like transposons that encode similarly degraded subtype I-B systems. Peters et al., PNAS 114 (35) (2017); DOI: 10.1073/pnas.1709035114; see also, Makarova et al. 2018. The CRISPR Journal, v. 1, n5, FIG. 5.


The Class 1 systems typically use a multi-protein effector complex, which can, in some embodiments, include ancillary proteins, such as one or more proteins in a complex referred to as a CRISPR-associated complex for antiviral defense (Cascade), one or more adaptation proteins (e.g., Cas1, Cas2, RNA nuclease), and/or one or more accessory proteins (e.g., Cas 4, DNA nuclease), CRISPR associated Rossman fold (CARF) domain containing proteins, and/or RNA transcriptase.


The backbone of the Class 1 CRISPR-Cas system effector complexes can be formed by RNA recognition motif domain-containing protein(s) of the repeat-associated mysterious proteins (RAMPs) family subunits (e.g., Cas 5, Cas6, and/or Cas7). RAMP proteins are characterized by having one or more RNA recognition motif domains. In some embodiments, multiple copies of RAMPs can be present. In some embodiments, the Class I CRISPR-Cas system can include 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 or more Cas5, Cas6, and/or Cas 7 proteins. In some embodiments, the Cas6 protein is an RNAse, which can be responsible for pre-crRNA processing. When present in a Class 1 CRISPR-Cas system, Cas6 can be optionally physically associated with the effector complex.


Class 1 CRISPR-Cas system effector complexes can, in some embodiments, also include a large subunit. The large subunit can be composed of or include a Cas8 and/or Cas10 protein. See, e.g., FIGS. 1 and 2. Koonin E V, Makarova K S. 2019. Phil. Trans. R. Soc. B 374: 20180087, DOI: 10.1098/rstb.2018.0087 and Makarova et al. 2020.


Class 1 CRISPR-Cas system effector complexes can, in some embodiments, include a small subunit (for example, Cas11). See, e.g., FIGS. 1 and 2. Koonin E V, Makarova K S. 2019 Origins and Evolution of CRISPR-Cas systems. Phil. Trans. R. Soc. B 374: 20180087, DOI: 10.1098/rstb.2018.0087.


In some embodiments, the Class 1 CRISPR-Cas system can be a Type I CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-A CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-B CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-C CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-D CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-E CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-F1 CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-F2 CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-F3 CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a subtype I-G CRISPR-Cas system. In some embodiments, the Type I CRISPR-Cas system can be a CRISPR Cas variant, such as a Type I-A, I-B, I-E, I-F and I-U variants, which can include variants carried by transposons and plasmids, including versions of subtype I-F encoded by a large family of Tn7-like transposon and smaller groups of Tn7-like transposons that encode similarly degraded subtype I-B systems as previously described.


In some embodiments, the Class 1 CRISPR-Cas system can be a Type III CRISPR-Cas system. In some embodiments, the Type III CRISPR-Cas system can be a subtype III-A CRISPR-Cas system. In some embodiments, the Type III CRISPR-Cas system can be a subtype III-B CRISPR-Cas system. In some embodiments, the Type III CRISPR-Cas system can be a subtype III-C CRISPR-Cas system. In some embodiments, the Type III CRISPR-Cas system can be a subtype III-D CRISPR-Cas system. In some embodiments, the Type III CRISPR-Cas system can be a subtype III-E CRISPR-Cas system. In some embodiments, the Type III CRISPR-Cas system can be a subtype III-F CRISPR-Cas system.


In some embodiments, the Class 1 CRISPR-Cas system can be a Type IV CRISPR-Cas-system. In some embodiments, the Type IV CRISPR-Cas system can be a subtype IV-A CRISPR-Cas system. In some embodiments, the Type IV CRISPR-Cas system can be a subtype IV-B CRISPR-Cas system. In some embodiments, the Type IV CRISPR-Cas system can be a subtype IV-C CRISPR-Cas system.


The effector complex of a Class 1 CRISPR-Cas system can, in some embodiments, include a Cas3 protein that is optionally fused to a Cas2 protein, a Cas4, a Cas5, a Cas6, a Cas7, a Cas8, a Cas10, a Cas11, or a combination thereof. In some embodiments, the effector complex of a Class 1 CRISPR-Cas system can have multiple copies, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, or 14, of any one or more Cas proteins.


Class 2 CRISPR-Cas Systems

The compositions, systems, and methods described in greater detail elsewhere herein can be designed and adapted for use with Class 2 CRISPR-Cas systems. Thus, in some embodiments, the CRISPR-Cas system is a Class 2 CRISPR-Cas system. Class 2 systems are distinguished from Class 1 systems in that they have a single, large, multi-domain effector protein. In certain example embodiments, the Class 2 system can be a Type II, Type V, or Type VI system, which are described in Makarova et al. “Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants” Nature Reviews Microbiology, 18:67-81 (February 2020), incorporated herein by reference. Each type of Class 2 system is further divided into subtypes. See Markova et al. 2020, particularly at Figure. 2. Class 2, Type II systems can be divided into 4 subtypes: II-A, II-B, II-C1, and II-C2. Class 2, Type V systems can be divided into 17 subtypes: V-A, V-B1, V-B2, V-C, V-D, V-E, V-F1, V-F1(V-U3), V-F2, V-F3, V-G, V-H, V-I, V-K (V-U5), V-U1, V-U2, and V-U4. Class 2, Type IV systems can be divided into 5 subtypes: VI-A, VI-B1, VI-B2, VI-C, and VI-D.


The distinguishing feature of these types is that their effector complexes consist of a single, large, multi-domain protein. Type V systems differ from Type II effectors (e.g., Cas9), which contain two nuclear domains that are each responsible for the cleavage of one strand of the target DNA, with the HNH nuclease inserted inside the Ruv-C like nuclease domain sequence. The Type V systems (e.g., Cas12) only contain a RuvC-like nuclease domain that cleaves both strands. Type VI (Cas13) are unrelated to the effectors of Type II and V systems and contain two HEPN domains and target RNA. Cas13 proteins also display collateral activity that is triggered by target recognition. Some Type V systems have also been found to possess this collateral activity with two single-stranded DNA in in vitro contexts.


In some embodiments, the Class 2 system is a Type II system. In some embodiments, the Type II CRISPR-Cas system is a II-A CRISPR-Cas system. In some embodiments, the Type II CRISPR-Cas system is a II-B CRISPR-Cas system. In some embodiments, the Type II CRISPR-Cas system is a II-C1 CRISPR-Cas system. In some embodiments, the Type II CRISPR-Cas system is a II-C2 CRISPR-Cas system. In some embodiments, the Type II system is a Cas9 system. In some embodiments, the Type II system includes a Cas9.


In some embodiments, the Class 2 system is a Type V system. In some embodiments, the Type V CRISPR-Cas system is a V-A CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-B1 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-B2 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-C CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-D CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-E CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-F1 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-F1 (V-U3) CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-F2 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-F3 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-G CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-H CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-I CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-K (V-U5) CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-U1 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-U2 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system is a V-U4 CRISPR-Cas system. In some embodiments, the Type V CRISPR-Cas system includes a Cas12a (Cpf1), Cas12b (C2c1), Cas12c (C2c3), CasX, and/or Cas14.


In some embodiments the Class 2 system is a Type VI system. In some embodiments, the Type VI CRISPR-Cas system is a VI-A CRISPR-Cas system. In some embodiments, the Type VI CRISPR-Cas system is a VI-B1 CRISPR-Cas system. In some embodiments, the Type VI CRISPR-Cas system is a VI-B2 CRISPR-Cas system. In some embodiments, the Type VI CRISPR-Cas system is a VI-C CRISPR-Cas system. In some embodiments, the Type VI CRISPR-Cas system is a VI-D CRISPR-Cas system. In some embodiments, the Type VI CRISPR-Cas system includes a Cas13a (C2c2), Cas13b (Group 29/30), Cas13c, and/or Cas13d.


Specialized Cas-Based Systems

In some embodiments, the system is a Cas-based system that is capable of performing a specialized function or activity. For example, the Cas protein may be fused, operably coupled to, or otherwise associated with one or more functionals domains. In certain example embodiments, the Cas protein may be a catalytically dead Cas protein (“dCas”) and/or have nickase activity. A nickase is a Cas protein that cuts only one strand of a double stranded target. In such embodiments, the dCas or nickase provide a sequence specific targeting functionality that delivers the functional domain to or proximate a target sequence. Example functional domains that may be fused to, operably coupled to, or otherwise associated with a Cas protein can be or include, but are not limited to a nuclear localization signal (NLS) domain, a nuclear export signal (NES) domain, a translational activation domain, a transcriptional activation domain (e.g. VP64, p65, MyoD1, HSF1, RTA, and SET7/9), a translation initiation domain, a transcriptional repression domain (e.g., a KRAB domain, NuE domain, NcoR domain, and a SID domain such as a SID4X domain), a nuclease domain (e.g., FokI), a histone modification domain (e.g., a histone acetyltransferase), a light inducible/controllable domain, a chemically inducible/controllable domain, a transposase domain, a homologous recombination machinery domain, a recombinase domain, an integrase domain, and combinations thereof. Methods for generating catalytically dead Cas9 or a nickase Cas9 (WO 2014/204725, Ran et al. Cell. 2013 Sep. 12; 154(6):1380-1389), Cas12 (Liu et al. Nature Communications, 8, 2095 (2017), and Cas13 (WO 2019/005884, WO2019/060746) are known in the art and incorporated herein by reference.


In some embodiments, the functional domains can have one or more of the following activities: methylase activity, demethylase activity, translation activation activity, translation initiation activity, translation repression activity, transcription activation activity, transcription repression activity, transcription release factor activity, histone modification activity, nuclease activity, single-strand RNA cleavage activity, double-strand RNA cleavage activity, single-strand DNA cleavage activity, double-strand DNA cleavage activity, molecular switch activity, chemical inducibility, light inducibility, and nucleic acid binding activity. In some embodiments, the one or more functional domains may comprise epitope tags or reporters. Non-limiting examples of epitope tags include histidine (His) tags, V5 tags, FLAG tags, influenza hemagglutinin (HA) tags, Myc tags, VSV-G tags, and thioredoxin (Trx) tags. Examples of reporters include, but are not limited to, glutathione-S-transferase (GST), horseradish peroxidase (HRP), chloramphenicol acetyltransferase (CAT) beta-galactosidase, beta-glucuronidase, luciferase, green fluorescent protein (GFP), HcRed, DsRed, cyan fluorescent protein (CFP), yellow fluorescent protein (YFP), and auto-fluorescent proteins including blue fluorescent protein (BFP).


The one or more functional domain(s) may be positioned at, near, and/or in proximity to a terminus of the effector protein (e.g., a Cas protein). In embodiments having two or more functional domains, each of the two can be positioned at or near or in proximity to a terminus of the effector protein (e.g., a Cas protein). In some embodiments, such as those where the functional domain is operably coupled to the effector protein, the one or more functional domains can be tethered or linked via a suitable linker (including, but not limited to, GlySer linkers) to the effector protein (e.g., a Cas protein). When there is more than one functional domain, the functional domains can be same or different. In some embodiments, all the functional domains are the same. In some embodiments, all of the functional domains are different from each other. In some embodiments, at least two of the functional domains are different from each other. In some embodiments, at least two of the functional domains are the same as each other.


Other suitable functional domains can be found, for example, in International Patent Publication No. WO 2019/018423.


Split CRISPR-Cas Systems

In some embodiments, the CRISPR-Cas system is a split CRISPR-Cas system. See e.g., Zetche et al., 2015. Nat. Biotechnol. 33(2): 139-142 and WO 2019/018423, the compositions and techniques of which can be used in and/or adapted for use with the present invention. Split CRISPR-Cas proteins are set forth herein and in documents incorporated herein by reference in further detail herein. In certain embodiments, each part of a split CRISPR protein are attached to a member of a specific binding pair, and when bound with each other, the members of the specific binding pair maintain the parts of the CRISPR protein in proximity. In certain embodiments, each part of a split CRISPR protein is associated with an inducible binding pair. An inducible binding pair is one which is capable of being switched “on” or “off” by a protein or small molecule that binds to both members of the inducible binding pair. In some embodiments, CRISPR proteins may preferably split between domains, leaving domains intact. In particular embodiments, said Cas split domains (e.g., RuvC and HNH domains in the case of Cas9) can be simultaneously or sequentially introduced into the cell such that said split Cas domain(s) process the target nucleic acid sequence in the algae cell. The reduced size of the split Cas compared to the wild type Cas allows other methods of delivery of the systems to the cells, such as the use of cell penetrating peptides as described herein.


DNA and RNA Base Editing

In some embodiments, a polynucleotide of the present invention described elsewhere herein can be modified using a base editing system. In some embodiments, a Cas protein is connected or fused to a nucleotide deaminase. Thus, in some embodiments the Cas-based system can be a base editing system. As used herein “base editing” refers generally to the process of polynucleotide modification via a CRISPR-Cas-based or Cas-based system that does not include excising nucleotides to make the modification. Base editing can convert base pairs at precise locations without generating excess undesired editing byproducts that can be made using traditional CRISPR-Cas systems.


In certain example embodiments, the nucleotide deaminase may be a DNA base editor used in combination with a DNA binding Cas protein such as, but not limited to, Class 2 Type II and Type V systems. Two classes of DNA base editors are generally known: cytosine base editors (CBEs) and adenine base editors (ABEs). CBEs convert a C·G base pair into a T·A base pair (Komor et al. 2016. Nature. 533:420-424; Nishida et al. 2016. Science. 353; and Li et al. Nat. Biotech. 36:324-327) and ABEs convert an A·T base pair to a G·C base pair. Collectively, CBEs and ABEs can mediate all four possible transition mutations (C to T, A to G, T to C, and G to A). Rees and Liu. 2018. Nat. Rev. Genet. 19(12): 770-788, particularly at FIGS. 1b, 2a-2c, 3a-3f, and Table 1. In some embodiments, the base editing system includes a CBE and/or an ABE. In some embodiments, a polynucleotide of the present invention described elsewhere herein can be modified using a base editing system. Rees and Liu. 2018. Nat. Rev. Gent. 19(12):770-788. Base editors also generally do not need a DNA donor template and/or rely on homology-directed repair. Komor et al. 2016. Nature. 533:420-424; Nishida et al. 2016. Science. 353; and Gaudeli et al. 2017. Nature. 551:464-471. Upon binding to a target locus in the DNA, base pairing between the guide RNA of the system and the target DNA strand leads to displacement of a small segment of ssDNA in an “R-loop”. Nishimasu et al. Cell. 156:935-949. DNA bases within the ssDNA bubble are modified by the enzyme component, such as a deaminase. In some systems, the catalytically disabled Cas protein can be a variant or modified Cas can have nickase functionality and can generate a nick in the non-edited DNA strand to induce cells to repair the non-edited strand using the edited strand as a template. Komor et al. 2016. Nature. 533:420-424; Nishida et al. 2016. Science. 353; and Gaudeli et al. 2017. Nature. 551:464-471. Base editors may be further engineered to optimize conversion of nucleotides (e.g. A:T to G:C). Richter et al. 2020. Nature Biotechnology. doi.org/10.1038/s41587-020-0453-z.


Other Example Type V base editing systems are described in WO 2018/213708, WO 2018/213726, PCT/US2018/067207, PCT/US2018/067225, and PCT/US2018/067307 which are incorporated by referenced herein.


In certain example embodiments, the base editing system may be a RNA base editing system. As with DNA base editors, a nucleotide deaminase capable of converting nucleotide bases may be fused to a Cas protein. However, in these embodiments, the Cas protein will need to be capable of binding RNA. Example RNA binding Cas proteins include, but are not limited to, RNA-binding Cas9s such as Francisella novicida Cas9 (“FnCas9”), and Class 2 Type VI Cas systems. The nucleotide deaminase may be a cytidine deaminase or an adenosine deaminase, or an adenosine deaminase engineered to have cytidine deaminase activity. In certain example embodiments, the RNA based editor may be used to delete or introduce a post-translation modification site in the expressed mRNA. In contrast to DNA base editors, whose edits are permanent in the modified cell, RNA base editors can provide edits where finer temporal control may be needed, for example in modulating a particular immune response. Example Type VI RNA-base editing systems are described in Cox et al. 2017. Science 358: 1019-1027, WO 2019/005884, WO 2019/005886, WO 2019/071048, PCT/US20018/05179, PCT/US2018/067207, which are incorporated herein by reference. An example FnCas9 system that may be adapted for RNA base editing purposes is described in WO 2016/106236, which is incorporated herein by reference.


An example method for delivery of base-editing systems, including use of a split-intein approach to divide CBE and ABE into reconstitutable halves, is described in Levy et al. Nature Biomedical Engineering doi.org/10.1038/s41441-019-0505-5 (2019), which is incorporated herein by reference.


Prime Editors

In some embodiments, a polynucleotide of the present invention described elsewhere herein can be modified using a prime editing system (See e.g., Anzalone et al. 2019. Nature. 576: 149-157). Like base editing systems, prime editing systems can be capable of targeted modification of a polynucleotide without generating double stranded breaks and does not require donor templates. Further prime editing systems can be capable of all 12 possible combination swaps. Prime editing can operate via a “search-and-replace” methodology and can mediate targeted insertions, deletions, all 12 possible base-to-base conversion, and combinations thereof. Generally, a prime editing system, as exemplified by PE1, PE2, and PE3 (Id.), can include a reverse transcriptase fused or otherwise coupled or associated with an RNA-programmable nickase, and a prime-editing extended guide RNA (pegRNA) to facility direct copying of genetic information from the extension on the pegRNA into the target polynucleotide. Embodiments that can be used with the present invention include these and variants thereof. Prime editing can have the advantage of lower off-target activity than traditional CRIPSR-Cas systems along with few byproducts and greater or similar efficiency as compared to traditional CRISPR-Cas systems.


In some embodiments, the prime editing guide molecule can specify both the target polynucleotide information (e.g., sequence) and contain a new polynucleotide cargo that replaces target polynucleotides. To initiate transfer from the guide molecule to the target polynucleotide, the PE system can nick the target polynucleotide at a target side to expose a 3′hydroxyl group, which can prime reverse transcription of an edit-encoding extension region of the guide molecule (e.g., a prime editing guide molecule or peg guide molecule) directly into the target site in the target polynucleotide. See e.g., Anzalone et al. 2019. Nature. 576: 149-157, particularly at FIGS. 1b, 1c, related discussion, and Supplementary discussion.


In some embodiments, a prime editing system can be composed of a Cas polypeptide having nickase activity, a reverse transcriptase, and a guide molecule. The Cas polypeptide can lack nuclease activity. The guide molecule can include a target binding sequence as well as a primer binding sequence and a template containing the edited polynucleotide sequence. The guide molecule, Cas polypeptide, and/or reverse transcriptase can be coupled together or otherwise associate with each other to form an effector complex and edit a target sequence. In some embodiments, the Cas polypeptide is a Class 2, Type V Cas polypeptide. In some embodiments, the Cas polypeptide is a Cas9 polypeptide (e.g. is a Cas9 nickase). In some embodiments, the Cas polypeptide is fused to the reverse transcriptase. In some embodiments, the Cas polypeptide is linked to the reverse transcriptase.


In some embodiments, the prime editing system can be a PE1 system or variant thereof, a PE2 system or variant thereof, or a PE3 (e.g., PE3, PE3b) system. See e.g., Anzalone et al. 2019. Nature. 576: 149-157, particularly at pgs. 2-3, FIGS. 2a, 3a-3f, 4a-4b, Extended data FIGS. 3a-3b, 4,


The peg guide molecule can be about 10 to about 200 or more nucleotides in length, such as 10 to/or 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 190, 191, 192, 193, 194, 195, 196, 197, 198, 199, or 200 or more nucleotides in length. Optimization of the peg guide molecule can be accomplished as described in Anzalone et al. 2019. Nature. 576: 149-157, particularly at pg. 3, FIG. 2a-2b, and Extended Data FIGS. 5a-c.


CRISPR Associated Transposase (CAST) Systems

In some embodiments, a polynucleotide of the present invention described elsewhere herein can be modified using a CRISPR Associated Transposase (“CAST”) system. CAST system can include a Cas protein that is catalytically inactive, or engineered to be catalytically active, and further comprises a transposase (or subunits thereof) that catalyze RNA-guided DNA transposition. Such systems are able to insert DNA sequences at a target site in a DNA molecule without relying on host cell repair machinery. CAST systems can be Class1 or Class 2 CAST systems. An example Class 1 system is described in Klompe et al. Nature, doi:10.1038/s41586-019-1323, which is in incorporated herein by reference. An example Class 2 system is described in Strecker et al. Science. 10/1126/science. aax9181 (2019), and PCT/US2019/066835 which are incorporated herein by reference.


Guide Molecules

The CRISPR-Cas or Cas-Based system described herein can, in some embodiments, include one or more guide molecules. The terms guide molecule, guide sequence and guide polynucleotide, refer to polynucleotides capable of guiding Cas to a target genomic locus and are used interchangeably as in foregoing cited documents such as WO 2014/093622 (PCT/US2013/074667). In general, a guide sequence is any polynucleotide sequence having sufficient complementarity with a target polynucleotide sequence to hybridize with the target sequence and direct sequence-specific binding of a CRISPR complex to the target sequence. The guide molecule can be a polynucleotide.


The ability of a guide sequence (within a nucleic acid-targeting guide RNA) to direct sequence-specific binding of a nucleic acid-targeting complex to a target nucleic acid sequence may be assessed by any suitable assay. For example, the components of a nucleic acid-targeting CRISPR system sufficient to form a nucleic acid-targeting complex, including the guide sequence to be tested, may be provided to a host cell having the corresponding target nucleic acid sequence, such as by transfection with vectors encoding the components of the nucleic acid-targeting complex, followed by an assessment of preferential targeting (e.g., cleavage) within the target nucleic acid sequence, such as by Surveyor assay (Qui et al. 2004. BioTechniques. 36(4)702-707). Similarly, cleavage of a target nucleic acid sequence may be evaluated in a test tube by providing the target nucleic acid sequence, components of a nucleic acid-targeting complex, including the guide sequence to be tested and a control guide sequence different from the test guide sequence, and comparing binding or rate of cleavage at the target sequence between the test and control guide sequence reactions. Other assays are possible and will occur to those skilled in the art.


In some embodiments, the guide molecule is an RNA. The guide molecule(s) (also referred to interchangeably herein as guide polynucleotide and guide sequence) that are included in the CRISPR-Cas or Cas based system can be any polynucleotide sequence having sufficient complementarity with a target nucleic acid sequence to hybridize with the target nucleic acid sequence and direct sequence-specific binding of a nucleic acid-targeting complex to the target nucleic acid sequence. In some embodiments, the degree of complementarity, when optimally aligned using a suitable alignment algorithm, can be about or more than about 50%, 60%, 75%, 80%, 85%, 90%, 95%, 97.5%, 99%, or more. Optimal alignment may be determined with the use of any suitable algorithm for aligning sequences, non-limiting examples of which include the Smith-Waterman algorithm, the Needleman-Wunsch algorithm, algorithms based on the Burrows-Wheeler Transform (e.g., the Burrows Wheeler Aligner), ClustalW, Clustal X, BLAT, Novoalign (Novocraft Technologies; available at www.novocraft.com), ELAND (Illumina, San Diego, CA), SOAP (available at soap.genomics.org.cn), and Maq (available at maq.sourceforge.net).


A guide sequence, and hence a nucleic acid-targeting guide, may be selected to target any target nucleic acid sequence. The target sequence may be DNA. The target sequence may be any RNA sequence. In some embodiments, the target sequence may be a sequence within an RNA molecule selected from the group consisting of messenger RNA (mRNA), pre-mRNA, ribosomal RNA (rRNA), transfer RNA (tRNA), micro-RNA (miRNA), small interfering RNA (siRNA), small nuclear RNA (snRNA), small nucleolar RNA (snoRNA), double stranded RNA (dsRNA), non-coding RNA (ncRNA), long non-coding RNA (lncRNA), and small cytoplasmatic RNA (scRNA). In some preferred embodiments, the target sequence may be a sequence within an RNA molecule selected from the group consisting of mRNA, pre-mRNA, and rRNA. In some preferred embodiments, the target sequence may be a sequence within an RNA molecule selected from the group consisting of ncRNA, and lncRNA. In some more preferred embodiments, the target sequence may be a sequence within an mRNA molecule or a pre-mRNA molecule.


In some embodiments, a nucleic acid-targeting guide is selected to reduce the degree secondary structure within the nucleic acid-targeting guide. In some embodiments, about or less than about 75%, 50%, 40%, 30%, 25%, 20%, 15%, 10%, 5%, 1%, or fewer of the nucleotides of the nucleic acid-targeting guide participate in self-complementary base pairing when optimally folded. Optimal folding may be determined by any suitable polynucleotide folding algorithm. Some programs are based on calculating the minimal Gibbs free energy. An example of one such algorithm is mFold, as described by Zuker and Stiegler (Nucleic Acids Res. 9 (1981), 133-148). Another example folding algorithm is the online webserver RNAfold, developed at Institute for Theoretical Chemistry at the University of Vienna, using the centroid structure prediction algorithm (see e.g., A. R. Gruber et al., 2008, Cell 106(1): 23-24; and PA Carr and GM Church, 2009, Nature Biotechnology 27(12): 1151-62).


In certain embodiments, a guide RNA or crRNA may comprise, consist essentially of, or consist of a direct repeat (DR) sequence and a guide sequence or spacer sequence. In certain embodiments, the guide RNA or crRNA may comprise, consist essentially of, or consist of a direct repeat sequence fused or linked to a guide sequence or spacer sequence. In certain embodiments, the direct repeat sequence may be located upstream (i.e., 5′) from the guide sequence or spacer sequence. In other embodiments, the direct repeat sequence may be located downstream (i.e., 3′) from the guide sequence or spacer sequence.


In certain embodiments, the crRNA comprises a stem loop, preferably a single stem loop. In certain embodiments, the direct repeat sequence forms a stem loop, preferably a single stem loop.


In certain embodiments, the spacer length of the guide RNA is from 15 to 35 nt. In certain embodiments, the spacer length of the guide RNA is at least 15 nucleotides. In certain embodiments, the spacer length is from 15 to 17 nt, e.g., 15, 16, or 17 nt, from 17 to 20 nt, e.g., 17, 18, 19, or 20 nt, from 20 to 24 nt, e.g., 20, 21, 22, 23, or 24 nt, from 23 to 25 nt, e.g., 23, 24, or 25 nt, from 24 to 27 nt, e.g., 24, 25, 26, or 27 nt, from 27 to 30 nt, e.g., 27, 28, 29, or 30 nt, from 30 to 35 nt, e.g., 30, 31, 32, 33, 34, or 35 nt, or 35 nt or longer.


The “tracrRNA” sequence or analogous terms includes any polynucleotide sequence that has sufficient complementarity with a crRNA sequence to hybridize. In some embodiments, the degree of complementarity between the tracrRNA sequence and crRNA sequence along the length of the shorter of the two when optimally aligned is about or more than about 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 97.5%, 99%, or higher. In some embodiments, the tracr sequence is about or more than about 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 25, 30, 40, 50, or more nucleotides in length. In some embodiments, the tracr sequence and crRNA sequence are contained within a single transcript, such that hybridization between the two produces a transcript having a secondary structure, such as a hairpin.


In general, degree of complementarity is with reference to the optimal alignment of the sca sequence and tracr sequence, along the length of the shorter of the two sequences. Optimal alignment may be determined by any suitable alignment algorithm and may further account for secondary structures, such as self-complementarity within either the sca sequence or tracr sequence. In some embodiments, the degree of complementarity between the tracr sequence and sca sequence along the length of the shorter of the two when optimally aligned is about or more than about 25%, 30%, 40%, 50%, 60%, 70%, 80%, 90%, 95%, 97.5%, 99%, or higher.


In some embodiments, the degree of complementarity between a guide sequence and its corresponding target sequence can be about or more than about 50%, 60%, 75%, 80%, 85%, 90%, 95%, 97.5%, 99%, or 100%; a guide or RNA or sgRNA can be about or more than about 5, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, 40, 45, 50, 75, or more nucleotides in length; or guide or RNA or sgRNA can be less than about 75, 50, 45, 40, 35, 30, 25, 20, 15, 12, or fewer nucleotides in length; and tracr RNA can be 30 or 50 nucleotides in length. In some embodiments, the degree of complementarity between a guide sequence and its corresponding target sequence is greater than 94.5% or 95% or 95.5% or 96% or 96.5% or 97% or 97.5% or 98% or 98.5% or 99% or 99.5% or 99.9%, or 100%. Off target is less than 100% or 99.9% or 99.5% or 99% or 99% or 98.5% or 98% or 97.5% or 97% or 96.5% or 96% or 95.5% or 95% or 94.5% or 94% or 93% or 92% or 91% or 90% or 89% or 88% or 87% or 86% or 85% or 84% or 83% or 82% or 81% or 80% complementarity between the sequence and the guide, with it advantageous that off target is 100% or 99.9% or 99.5% or 99% or 99% or 98.5% or 98% or 97.5% or 97% or 96.5% or 96% or 95.5% or 95% or 94.5% complementarity between the sequence and the guide.


In some embodiments according to the invention, the guide RNA (capable of guiding Cas to a target locus) may comprise (1) a guide sequence capable of hybridizing to a genomic target locus in the eukaryotic cell; (2) a tracr sequence; and (3) a tracr mate sequence. All (1) to (3) may reside in a single RNA, i.e., an sgRNA (arranged in a 5′ to 3′ orientation), or the tracr RNA may be a different RNA than the RNA containing the guide and tracr sequence. The tracr hybridizes to the tracr mate sequence and directs the CRISPR/Cas complex to the target sequence. Where the tracr RNA is on a different RNA than the RNA containing the guide and tracr sequence, the length of each RNA may be optimized to be shortened from their respective native lengths, and each may be independently chemically modified to protect from degradation by cellular RNase or otherwise increase stability.


Many modifications to guide sequences are known in the art and are further contemplated within the context of this invention. Various modifications may be used to increase the specificity of binding to the target sequence and/or increase the activity of the Cas protein and/or reduce off-target effects. Example guide sequence modifications are described in PCT US2019/045582, specifically paragraphs [0178]-[0333]. which is incorporated herein by reference.


Target Sequences, PAMs, and PFSs
Target Sequences

In the context of formation of a CRISPR complex, “target sequence” refers to a sequence to which a guide sequence is designed to have complementarity, where hybridization between a target sequence and a guide sequence promotes the formation of a CRISPR complex. A target sequence may comprise RNA polynucleotides. The term “target RNA” refers to an RNA polynucleotide being or comprising the target sequence. In other words, the target polynucleotide can be a polynucleotide or a part of a polynucleotide to which a part of the guide sequence is designed to have complementarity with and to which the effector function mediated by the complex comprising the CRISPR effector protein and a guide molecule is to be directed. In some embodiments, a target sequence is located in the nucleus or cytoplasm of a cell.


The guide sequence can specifically bind a target sequence in a target polynucleotide. The target polynucleotide may be DNA. The target polynucleotide may be RNA. The target polynucleotide can have one or more (e.g., 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, etc. or more) target sequences. The target polynucleotide can be on a vector. The target polynucleotide can be genomic DNA. The target polynucleotide can be episomal. Other forms of the target polynucleotide are described elsewhere herein.


The target sequence may be DNA. The target sequence may be any RNA sequence. In some embodiments, the target sequence may be a sequence within an RNA molecule selected from the group consisting of messenger RNA (mRNA), pre-mRNA, ribosomal RNA (rRNA), transfer RNA (tRNA), micro-RNA (miRNA), small interfering RNA (siRNA), small nuclear RNA (snRNA), small nucleolar RNA (snoRNA), double stranded RNA (dsRNA), non-coding RNA (ncRNA), long non-coding RNA (lncRNA), and small cytoplasmatic RNA (scRNA). In some preferred embodiments, the target sequence (also referred to herein as a target polynucleotide) may be a sequence within an RNA molecule selected from the group consisting of mRNA, pre-mRNA, and rRNA. In some preferred embodiments, the target sequence may be a sequence within an RNA molecule selected from the group consisting of ncRNA, and lncRNA. In some more preferred embodiments, the target sequence may be a sequence within an mRNA molecule or a pre-mRNA molecule.


PAM and PFS Elements

PAM elements are sequences that can be recognized and bound by Cas proteins. Cas proteins/effector complexes can then unwind the dsDNA at a position adjacent to the PAM element. It will be appreciated that Cas proteins and systems that include them that target RNA do not require PAM sequences (Marraffini et al. 2010. Nature. 463:568-571). Instead, many rely on PFSs, which are discussed elsewhere herein. In certain embodiments, the target sequence should be associated with a PAM (protospacer adjacent motif) or PFS (protospacer flanking sequence or site), that is, a short sequence recognized by the CRISPR complex. Depending on the nature of the CRISPR-Cas protein, the target sequence should be selected, such that its complementary sequence in the DNA duplex (also referred to herein as the non-target sequence) is upstream or downstream of the PAM. In the embodiments, the complementary sequence of the target sequence is downstream or 3′ of the PAM or upstream or 5′ of the PAM. The precise sequence and length requirements for the PAM differ depending on the Cas protein used, but PAMs are typically 2-5 base pair sequences adjacent the protospacer (that is, the target sequence). Examples of the natural PAM sequences for different Cas proteins are provided herein below and the skilled person will be able to identify further PAM sequences for use with a given Cas protein.


The ability to recognize different PAM sequences depends on the Cas polypeptide(s) included in the system. See e.g., Gleditzsch et al. 2019. RNA Biology. 16(4):504-517. Table A below shows several Cas polypeptides and the PAM sequence they recognize.









TABLE A





Example PAM Sequences
















Cas Protein
PAM Sequence





SpCas9
NGG/NRG





SaCas9
NGRRT or NGRRN





NmeCas9
NNNNGATT





CjCas9
NNNNRYAC





StCas9
NNAGAAW





Cas12a (Cpf1) (including
TTTV


LbCpf1 and AsCpf1)






Cas12b (C2c1)
TTT, TTA, and TTC





Cas12c (C2c3)
TA





Cas12d (CasY)
TA





Cas12e (CasX)
5′-TTCN-3′









In a preferred embodiment, the CRISPR effector protein may recognize a 3′ PAM. In certain embodiments, the CRISPR effector protein may recognize a 3′ PAM which is 5′H, wherein H is A, C or U.


Further, engineering of the PAM Interacting (PI) domain on the Cas protein may allow programing of PAM specificity, improve target site recognition fidelity, and increase the versatility of the CRISPR-Cas protein, for example as described for Cas9 in Kleinstiver B P et al. Engineered CRISPR-Cas9 nucleases with altered PAM specificities. Nature. 2015 Jul. 23; 523(7561):481-5. doi: 10.1038/nature14592. As further detailed herein, the skilled person will understand that Cas13 proteins may be modified analogously. Gao et al, “Engineered Cpf1 Enzymes with Altered PAM Specificities,” bioRxiv 091611; doi: dx.doi.org/10.1101/091611 (Dec. 4, 2016). Doench et al. created a pool of sgRNAs, tiling across all possible target sites of a panel of six endogenous mouse and three endogenous human genes and quantitatively assessed their ability to produce null alleles of their target gene by antibody staining and flow cytometry. The authors showed that optimization of the PAM improved activity and also provided an on-line tool for designing sgRNAs.


PAM sequences can be identified in a polynucleotide using an appropriate design tool, which are commercially available as well as online. Such freely available tools include, but are not limited to, CRISPRFinder and CRISPRTarget. Mojica et al. 2009. Microbiol. 155(Pt. 3):733-740; Atschul et al. 1990. J. Mol. Biol. 215:403-410; Biswass et al. 2013 RNA Biol. 10:817-827; and Grissa et al. 2007. Nucleic Acid Res. 35:W52-57. Experimental approaches to PAM identification can include, but are not limited to, plasmid depletion assays (Jiang et al. 2013. Nat. Biotechnol. 31:233-239; Esvelt et al. 2013. Nat. Methods. 10:1116-1121; Kleinstiver et al. 2015. Nature. 523:481-485), screened by a high-throughput in vivo model called PAM-SCNAR (Pattanayak et al. 2013. Nat. Biotechnol. 31:839-843 and Leenay et al. 2016. Mol. Cell. 16:253), and negative screening (Zetsche et al. 2015. Cell. 163:759-771).


As previously mentioned, CRISPR-Cas systems that target RNA do not typically rely on PAM sequences. Instead, such systems typically recognize protospacer flanking sites (PFSs) instead of PAMs Thus, Type VI CRISPR-Cas systems typically recognize protospacer flanking sites (PFSs) instead of PAMs. PFSs represents an analogue to PAMs for RNA targets. Type VI CRISPR-Cas systems employ a Cas13. Some Cas13 proteins analyzed to date, such as Cas13a (C2c2) identified from Leptotrichia shahii (LShCAsl3a) have a specific discrimination against G at the 3′end of the target RNA. The presence of a C at the corresponding crRNA repeat site can indicate that nucleotide pairing at this position is rejected. However, some Cas13 proteins (e.g., LwaCAsl3a and PspCas13b) do not seem to have a PFS preference. See e.g., Gleditzsch et al. 2019. RNA Biology. 16(4):504-517.


Some Type VI proteins, such as subtype B, have 5′-recognition of D (G, T, A) and a 3′-motif requirement of NAN or NNA. One example is the Cas13b protein identified in Bergeyella zoohelcum (BzCas13b). See e.g., Gleditzsch et al. 2019. RNA Biology. 16(4):504-517.


Overall Type VI CRISPR-Cas systems appear to have less restrictive rules for substrate (e.g., target sequence) recognition than those that target DNA (e.g., Type V and type II).


IscBs

In some embodiments, the nucleic acid-guided nucleases herein may be an IscB protein. An IscB protein may comprise an X domain and a Y domain as described herein. In some examples, the IscB proteins may form a complex with one or more guide molecules. In some cases, the IscB proteins may form a complex with one or more hRNA molecules which serve as a scaffold molecule and comprise guide sequences. In some examples, the IscB proteins are CRISPR-associated proteins, e.g., the loci of the nucleases are associated with an CRISPR array. In some examples, the IscB proteins are not CRISPR-associated.


In some examples, the IscB protein may be homolog or ortholog of IscB proteins described in Kapitonov V V et al., ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs, J Bacteriol. 2015 Dec. 28; 198(5):797-807. doi: 10.1128/JB.00783-15, which is incorporated by reference herein in its entirety.


In some embodiments, the IscBs may comprise one or more domains, e.g., one or more of a X domain (e.g., at N-terminus), a RuvC domain, a Bridge Helix domain, and a Y domain (e.g., at C-terminus). In some examples, the nucleic-acid guided nuclease comprises an N-terminal X domain, a RuvC domain (e.g., including a RuvC-I, RuvC-II, and RuvC-III subdomains), a Bridge Helix domain, and a C-terminal Y domain. In some examples, the nucleic-acid guided nuclease comprises In some examples, the nucleic-acid guided nuclease comprises an N-terminal X domain, a RuvC domain (e.g., including a RuvC-I, RuvC-II, and RuvC-III subdomains), a Bridge Helix domain, an HNH domain, and a C-terminal Y domain.


In some embodiments, the nucleic acid-guided nucleases may have a small size. For example, the nucleic acid-guided nucleases may be no more than 50, no more than 100, no more than 150, no more than 200, no more than 250, no more than 300, no more than 350, no more than 400, no more than 450, no more than 500, no more than 550, no more than 600, no more than 650, no more than 700, no more than 750, no more than 800, no more than 850, no more than 900, no more than 950, or no more than 1000 amino acids in length.


In some examples, the IscB protein shares at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, or 100% sequence identity with a IscB protein selected from Table 1.











TABLE 1







No.
Proteins
Sequences













1
IscB(−HNH)
1
mstdatlirt tpshaeadat dtlvatplmp prrvispwpg pgegqslmri pvvdirgmal



EFH81386
61
mpctpakarh llksgnarpk rnklglfyvq lsyeqepdnq slvagvdpgs kfeglsvvgt




121
kdtvlnlmve apdhvkgavq trrtmrrarr qrkwrrpkrf hnrlnrmqri ppstrsrwea




181
karivahlrt ilpftdvvve dvqavtrkgk ggtwngsfsp vqvgkehlyr llramgltlh




241
lregwqtkel reqhglkktk skskqsfesh avdswvlaas isgaehptct rlwymvpail




301
hrrqlhrlqa skggvrkpyg gtrslgvkrg tlvehkkygr ctvggvdrkr ntislheyrt




361
ntrltqaakv etcrvltwls wrswllrgkr tsskgkgshs s (SEQ ID NO: 1)





2
IscB(+HNH)
1
mqpakqqnwv fqingdkqpl dminpgrcre lqnrgklasf rrfpyvviqq qtienpqtke



TAE54104.1
61
yilkidpgsq wtgfaiqcgn dilfraelnh rgeaikfdlv krawfrrgrr srnlryrkkr




121
lnrakpegwl apsirhrvlt vetwikrfmr ycpiawieie qvrfdtqkla npeidgveyq




181
qgelqgyevr eyllqkwgrk caycgtenvp levehiqsks kggssrignl tlachvcnvk




241
kgnldvrdfl akspdilngv lenstkplkd aaavnstrya ivkmaksice nvkcssgart




301
kmnrvrqgle kthsldaacv gesgasirvl tdrpllitck ghgsrqsirv nasgfpavkn




361
aktvfthiaa gdvvrftigk drkkaqagty tarvktptpk gfevlidgar islstmsnvv




421
fvhrsdgygy el (SEQ ID NO: 2)





3
IscB(+HNH)
1
mavfvidkhk rplmpcsekr arlllergra vvhrqvpfvi rlkdrtvqhs avqplrvald



WP_038093640.1
61
pgsratgmal vrekntvdtg tgevyreria lnlfelvhrg hrireqldqr rnfrrrrrga




121
nlryraprfd nrrrppgwla pslqhrvdtt mawvrrlerw apasaigiet vrfdtqrlqn




181
peisgveyqq galagcevre yllekwgrkc aycgaenvpl eiehivpksr ggsdrvsnla




241
lacracnqak gnrdvrafla dqperlaril aqakaplkda aavnatrwal yralvdtglp




301
veagtggrtk wnrtrlglpk thaldalcvg qvdqvrhwrv pvlgircagr gsyrrtrltr




361
hgfprgyltr nksafgfqtg dliravvtkg kkagtylgri airasgsfni qtpmgvvqgi




421
hhrfctllqr adgygyfvqp kpteaalssp rlkagvssag n (SEQ ID NO: 3)





4
IscB(+HNH)
1
mttnvvfvid tnqkplqpcs aavarklllr gkaamfrryp aviilkkevd svgkpkielr



WP_052490348.1
61
idpgskytgf alvdskdnad fiiwgteleh rgaaickelt krsairrsrr nrktryrkkr




121
ferrkpegwl apslqhrvdt tltwvkrick fvpimsisve qvkfdlqkle nsdiqgieyq




181
qgtlagytlr eallehwgrk caycdvenvf leiehiypks kggsdkfsnl tlachkcnin




241
kgnksidefl lsdhkrleqi klhqkktlkd aaavnatrkk lvttlqektf lnvlvsdgas




301
tkmtrlsssl akrhwidagc vnttlivilk tlqplqvkcn ghgnkqfvtm daygfprksy




361
epkkvrkdwk agdiirvtkk dgtmlmgrvk kaakklvyip fggkeasfss enakaihrsd




421
gyrysfaaid sellqkmat (SEQ ID NO: 4)





5
IscB(+HNH)
1
mpnkyafvld skgklldptk skkawylirk gkaslveeyp liiklkrevp kdqvnsdkli



WP_015325818.1
61
lgiddgtkkv gfalvqkcqt knkvlfkavm eqrqdvskkm eerrgyrryr rshkryrpar




121
fdnrssskrk grippsilqk kqailrvvnk lkkyiridki vledvsidir kltegrelyn




181
weyqesnrld enlrkatlyr ddctcqlegt tetmlhahhi mprrdggads iynlitlcka




241
chkdkvdnne yqykdqflai idskelsdlk sashvmqgkt wlrdklskia qleitsggnt




301
ankridyeie kshsndaict tgllpvdnid dikeyyikpl rkkskakike lkcfrqrdlv




361
kytkrngety tgyitslrik nnkynskven fstlkgkifr gygfrnltll nrpkglmiv





(SEQ ID NO: 5)





6
sp|G3ECR1|CAS9_
1
mlfnkciiis inldfsnkek cmtkpysigl digtnsvgwa vitdnykvps kkmkvlgnts



STRTR
61
kkyikknllg vllfdsgita egrrlkrtar rrytrrrnri lylqeifste matlddaffq




121
rlddsflvpd dkrdskypif gnlveekvyh defptiyhlr kyladstkka dlrlvylala




181
hmikyrghfl iegefnsknn diqknfqdfl dtynaifesd lslenskqle eivkdkiskl




241
ekkdrilklf pgeknsgifs eflklivgnq adfrkcfnld ekaslhfske sydedletll




301
gyigddysdv flkakklyda illsgfltvt dneteaplss amikrynehk edlallkeyi




361
rnislktyne vfkddtkngy agyidgktnq edfyvylknl laefegadyf lekidredfl




421
rkqrtfdngs ipyqihlqem raildkqakf ypflaknker iekiltfrip yyvgplargn




481
sdfawsirkr nekitpwnfe dvidkessae afinrmtsfd lylpeekvlp khsllyetfn




541
vyneltkvrf iaesmrdyqf ldskqkkdiv rlyfkdkrkv tdkdiieylh aiygydgiel




601
kgiekqfnss lstyhdllni indkefldds sneaiieeii htltifedre mikqrlskfe




661
nifdksvlkk lsrrhytgwg klsaklingi rdeksgntil dyliddgisn rnfmqlihdd




721
alsfkkkiqk aqiigdedkg nikevvkslp gspaikkgil qsikivdelv kvmggrkpes




781
ivvemarenq ytnqgksnsq qrlkrleksl kelgskilke nipaklskid nnalqndrly




841
lyylqngkdm ytgddldidr lsnydidhii pqaflkdnsi dnkvlvssas nrgksddfps




901
levvkkrktf wyqllkskli sqrkfdnltk aerggllped kagfiqrqlv etrqitkhva




961
rlldekfnnk kdennravrt vkiitlkstl vsqfrkdfel ykvreindfh hahdaylnav




1021
iasallkkyp klepefvygd ypkynsfrer ksatekvyfy snimnifkks isladgrvie




1081
rplievneet gesvwnkesd latvrrvlsy pqvnvvkkve eqnhgldrgk pkglfnanls




1141
skpkpnsnen lvgakeyldp kkyggyagis nsfavlvkgt iekgakkkit nvlefqgisi




1201
ldrinyrkdk lnfllekgyk dieliielpk yslfelsdgs rrmlasilst nnkrgeihkg




1261
nqiflsqkfv kllyhakris ntinenhrky venhkkefee lfyyilefne nyvgakkngk




1321
llnsafqswq nhsidelcss figptgserk glfeltsrgs aadfeflgvk ipryrdytps




1381
slikdatlih qsvtglyetr idlaklgeg (SEQ ID NO: 6)





7
sp|J7RUA5|CAS9_
1
mkrnyilgld igitsvgygi idyetrdvid agvrlfkean vennegrrsk rgarrlkrrr



STAAU
61
rhriqrvkkl lfdynlltdh selsginpye arvkglsqkl seeefsaall hlakrrgvhn




121
vneveedtgn elstkeqisr nskaleekyv aelqlerlkk dgevrgsinr fktsdyvkea




181
kqllkvqkay hqldqsfidt yidlletrrt yyegpgegsp fgwkdikewy emlmghctyf




241
peelrsvkya ynadlynaln dlnnlvitrd enekleyyek fqiienvfkq kkkptlkqia




301
keilvneedi kgyrvtstgk peftnlkvyh dikditarke iienaelldq iakiltiyqs




361
sediqeeltn lnseltqeei eqisnlkgyt gthnlslkai nlildelwht ndnqiaifnr




421
lklvpkkvdl sqqkeipttl vddfilspvv krsfiqsikv inaiikkygl pndiiielar




481
eknskdagkm inemqkrnrq tnerieeiir ttgkenakyl iekiklhdmq egkclyslea




541
ipledllnnp fnyevdhiip rsvsfdnsfn nkvlvkqeen skkgnrtpfq ylsssdskis




601
yetfkkhiln lakgkgrisk tkkeylleer dinrfsvqkd finrnlvdtr yatrglmnll




661
rsyfrvnnld vkvksinggf tsflrrkwkf kkernkgykh haedaliian adfifkewkk




721
ldkakkvmen qmfeekqaes mpeieteqey keifitphqi khikdfkdyk yshrvdkkpn




781
relindtlys trkddkgntl ivnninglyd kdndklkkli nkspekllmy hhdpqtyqkl




841
klimeqygde knplykyyee tgnyltkysk kdngpvikki kyygnklnah lditddypns




901
rnkvvklslk pyrfdvyldn gvykfvtvkn ldvikkenyy evnskcyeea kklkkisnqa




961
efiasfynnd likingelyr vigvnndlln rievnmidit yreylenmnd krppriikti




1021
asktqsikky stdilgnlye vkskkhpgii kkg (SEQ ID NO: 7)





8

Streptococcus_

1
kysigldigt nsvgwavitd eykvpskkfk vlgntdrhsi kknligallf dsgetaeatr




pyogenes_SF370

61
lkrtarrryt rrknricylq eifsnemakv ddsffhrlee sflveedkkh erhpifgniv




121
devayhekyp tiyhlrkklv dstdkadlrl iylalahmik frghfliegd lnpdnsdvdk




181
lfiqlvqtyn qlfeenpina sgvdakails arlsksrrle nliaqlpgek knglfgnlia




241
lslgltpnfk snfdlaedak lqlskdtydd dldnllaqig dqyadlflaa knlsdaills




301
dilrvnteit kaplsasmik rydehhqdlt llkalvrqql pekykeiffd qskngyagyi




361
dggasqeefy kfikpilekm dgteellvkl nredllrkqr tfdngsiphq ihlgelhail




421
rrqedfypfl kdnrekieki ltfripyyvg plargnsrfa wmtrkseeti tpwnfeevvd




481
kgasaqsfie rmtnfdknlp nekvlpkhsl lyeyftvyne ltkvkyvteg mrkpaflsge




541
qkkaivdllf ktnrkvtvkq lkedyfkkie cfdsveisgv edrfnaslgt yhdllkiikd




601
kdfldneene diledivltl tlfedremie erlktyahlf ddkvmkqlkr rrytgwgrls




661
rklingirdk qsgktildfl ksdgfanrnf mqlihddslt fkediqkaqv sgqgdslheh




721
ianlagspai kkgilqtvkv vdelvkvmgr hkpeniviem arenqttqkg qknsrermkr




781
ieegikelgs qilkehpven tqlqneklyl yylqngrdmy vdqeldinrl sdydvdhivp




841
qsflkddsid nkvltrsdkn rgksdnvpse evvkkmknyw rqllnaklit qrkfdnltka




901
ergglseldk agfikrqlve trqitkhvaq ildsrmntky dendklirev kvitlksklv




961
sdfrkdfqfy kvreinnyhh ahdaylnavv gtalikkypk lesefvygdy kvydvrkmia




1021
kseqeigkat akyffysnim nffkteitla ngeirkrpli etngetgeiv wdkgrdfatv




1081
rkvlsmpqvn ivkktevqtg gfskesilpk rnsdkliark kdwdpkkygg fdsptvaysv




1141
lvvakvekgk skklksvkel lgitimerss feknpidfle akgykevkkd liiklpkysl




1201
felengrkrm lasagelqkg nelalpskyv nflylashye klkgspedne qkqlfveqhk




1261
hyldeiieqi sefskrvila danldkvlsa ynkhrdkpir eqaeniihlf tltnlgapaa




1321
fkyfdttidr krytstkevl datlihqsit glyetridls glggd (SEQ ID NO: 8)












No.
Proteins
Domains and amino acid positions





1
IscB(−HNH)
X domain: 51-97



EFH81386
RuvC-I: 104-118




Bridge Helix: 140-160




RuvC-II: 169-212




RuvC-III: 226-278





2
IscB(+HNH)
X domain: 11-56



TAE54104.1
RuvC-I: 63-77




Bridge Helix: 100-121




RuvC-II: 129-172




HNH: 211-243




RuvC-III: 279-321





3
IscB(+HNH)
X domain: 4-50



WP_038093640.1
RuvC-I: 57-71




Bridge Helix: 108-129




RuvC-II: 138-181




HNH: 220-252




RuvC-III: 288-330





4
IscB(+HNH)
X domain: 7-52



WP_052490348.1
RuvC-I: 59-73




Bridge Helix: 100-121




RuvC-II: 129-172




HNH: 211-243




RuvC-III: 279-322





5
IscB(+HNH)
X domain: 7-52



WP_015325818.1
RuvC-I: 61-75




Bridge Helix: 101-121




RuvC-II: 132-175




HNH: 215-247




RuvC-III: 284-327





6
sp|G3ECR1|CAS9_
RuvC-I: 28-42



STRTR
Bridge Helix: 85-108




Rec: 118-736




RuvC-II: 750-799




HNH: 864-896




RuvC-III: 957-1019




PAM Interaction (PI): 1119-1409





7
sp|J7RUA5|CAS9_
RuvC-I: 7-21



STAAU
Bridge Helix: 49-72




Rec: 80-433




RuvC-II: 445-493




HNH: 553-585




RuvC-III: 654-709




PAM Interaction (PI): 789-1053





8

Streptococcus_

RuvC-I: 4-18




pyogenes_SF370

Bridge Helix: 61-84




Rec: 94-718




RuvC-II: 725-774




HNH: 833-865




RuvC-III: 926-988




PAM Interaction (PI): 1099-1365









X Domains

In some embodiments, the IscB proteins comprise an X domain, e.g., at its N-terminal.


In certain embodiments, the X domain include the X domains in Table 1. Examples of the X domains also include any polypeptides a structural similarity and/or sequence similarity to a X domain described in the art. In some examples, the X domain may have an amino acid sequence that share at least 50%, at least 55%, at least 60%, at least 50%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, or 100% sequence identity with X domains in Table 1.


In some examples, the X domain may be no more than 10, no more than 20, no more than 30, no more than 40, no more than 50, no more than 60, no more than 70, no more than 80, no more than 90, or no more than 100 amino acids in length. For example, the X domain may be no more than 50 amino acids in length, such as comprising 2 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, or 50 amino acids in length.


Y Domain

In some embodiments, the IscB proteins comprise a Y domain, e.g., at its C-terminal.


In certain embodiments, the X domain include Y domains in Table 1. Examples of the Y domain also include any polypeptides a structural similarity and/or sequence similarity to a Y domain described in the art. In some examples, the Y domain may have an amino acid sequence that share at least 50%, at least 55%, at least 60%, at least 5%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, or 100% sequence identity with Y domains in Table 1.


RuvC Domain

In some embodiments, the IscB proteins comprises at least one nuclease domain. In certain embodiments, the IscB proteins comprise at least two nuclease domains. In certain embodiments, the one or more nuclease domains are only active upon presence of a cofactor. In certain embodiments, the cofactor is Magnesium (Mg). In embodiments where more than one nuclease domain is present and the substrate is a double-strand polynucleotide, the nuclease domains each cleave a different strand of the double-strand polynucleotide. In certain embodiments, the nuclease domain is a RuvC domain.


The IscB proteins may comprise a RuvC domain. The RuvC domain may comprise multiple subdomains, e.g., RuvC-I, RuvC-II and RuvC-III. The subdomains may be separated by interval sequences on the amino acid sequence of the protein.


In certain embodiments, examples of the RuvC domain include those in Table 1. Examples of the RuvC domain also include any polypeptides a structural similarity and/or sequence similarity to a RuvC domain described in the art. For example, the RuvC domain may share a structural similarity and/or sequence similarity to a RuvC of Cas9. In some examples, the RuvC domain may have an amino acid sequence that share at least 50%, at least 55%, at least 60%, at least 5%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, or 100% sequence identity with RuvC domains in Table 1.


Bridge Helix

The IscB proteins comprise abridge helix (BH) domain. The bridge helix domain refers to a helix and arginine rich polypeptide. The bridge helix domain may be located next to anyone of the amino acid domains in the nucleic-acid guided nuclease. In some embodiments, the bridge helix domain is next to a RuvC domain, e.g., next to RuvC-I, RuvC-II, or RuvC-III subdomain. In one example, the bridge helix domain is between a RuvC-1 and RuvC2 subdomains.


The bridge helix domain may be from 10 to 100, from 20 to 60, from 30 to 50, e.g., 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46 or 47, 48, 49, or 50 amino acids in length. Examples of bridge helix includes the polypeptide of amino acids 60-93 of the sequence of S. pyogenes Cas9.


In certain embodiments, examples of the BH domain include those in Table 1. Examples of the BH domain also include any polypeptides a structural similarity and/or sequence similarity to a BH domain described in the art. For example, the BH domain may share a structural similarity and/or sequence similarity to a BH domain of Cas9. In some examples, the BH domain may have an amino acid sequence that share at least 50%, at least 55%, at least 60%, at least 5%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, or 100% sequence identity with BH domains in Table 1.


HNH Domain

The IscB proteins comprise an HNH domain. In certain embodiments, at least one nuclease domain shares a substantial structural similarity or sequence similarity to a HNH domain described in the art.


In some examples, the nucleic acid-guided nuclease comprises a HNH domain and a RuvC domain. In the cases where the RuvC domain comprises RuvC-I, RuvC-II, and RuvC-III domain, the HNH domain may be located between the Ruv C II and RuvC III subdomains of the RuvC domain.


In certain embodiments, examples of the HNH domain include those in Table 1. Examples of the HNH domain also include any polypeptides a structural similarity and/or sequence similarity to a HNH domain described in the art. For example, the HNH domain may share a structural similarity and/or sequence similarity to a HNH domain of Cas9. In some examples, the HNH domain may have an amino acid sequence that share at least 50%, at least 55%, at least 60%, at least 5%, at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 99%, or 100% sequence identity with HNH domains in Table 1.


hRNA


In some examples, the IscB proteins capable of forming a complex with one or more hRNA molecules. The hRNA complex can comprise a guide sequence and a scaffold that interacts with the IscB polypeptide. An hRNA molecules may form a complex with an IscB polypeptide nuclease or IscB polypeptide and direct the complex to bind with a target sequence. In certain example embodiments, the hRNA molecule is a single molecule comprising a scaffold sequence and a spacer sequence. In certain example embodiments, the spacer is 5′ of the scaffold sequence. In certain example embodiments, the hRNA molecule may further comprise a conserved nucleic acid sequence between the scaffold and spacer portions.


As used herein, a heterologous hRNA molecule is an hRNA molecule that is not derived from the same species as the IscB polypeptide nuclease, or comprises a portion of the molecule, e.g., spacer, that is not derived from the same species as the IscB polypeptide nuclease, e.g., IscB protein. For example, a heterologous hRNA molecule of a IscB polypeptide nuclease derived from species A comprises a polynucleotide derived from a species different from species A, or an artificial polynucleotide.


Zinc Finger Nucleases

In some embodiments, the polynucleotide is modified using a Zinc Finger nuclease or system thereof. One type of programmable DNA-binding domain is provided by artificial zinc-finger (ZF) technology, which involves arrays of ZF modules to target new DNA-binding sites in the genome. Each finger module in a ZF array targets three DNA bases. A customized array of individual zinc finger domains is assembled into a ZF protein (ZFP).


ZFPs can comprise a functional domain. The first synthetic zinc finger nucleases (ZFNs) were developed by fusing a ZF protein to the catalytic domain of the Type IIS restriction enzyme FokI. (Kim, Y. G. et al., 1994, Chimeric restriction endonuclease, Proc. Natl. Acad. Sci. U.S.A. 91, 883-887; Kim, Y. G. et al., 1996, Hybrid restriction enzymes: zinc finger fusions to Fok I cleavage domain. Proc. Natl. Acad. Sci. U.S.A. 93, 1156-1160). Increased cleavage specificity can be attained with decreased off target activity by use of paired ZFN heterodimers, each targeting different nucleotide sequences separated by a short spacer. (Doyon, Y. et al., 2011, Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures. Nat. Methods 8, 74-79). ZFPs can also be designed as transcription activators and repressors and have been used to target many genes in a wide variety of organisms. Exemplary methods of genome editing using ZFNs can be found for example in U.S. Pat. Nos. 6,534,261, 6,607,882, 6,746,838, 6,794,136, 6,824,978, 6,866,997, 6,933,113, 6,979,539, 7,013,219, 7,030,215, 7,220,719, 7,241,573, 7,241,574, 7,585,849, 7,595,376, 6,903,185, and 6,479,626, all of which are specifically incorporated by reference.


TALE Nucleases

In some embodiments, a TALE nuclease or TALE nuclease system can be used to modify a polynucleotide. In some embodiments, the methods provided herein use isolated, non-naturally occurring, recombinant or engineered DNA binding proteins that comprise TALE monomers or TALE monomers or half monomers as a part of their organizational structure that enable the targeting of nucleic acid sequences with improved efficiency and expanded specificity.


Naturally occurring TALEs or “wild type TALEs” are nucleic acid binding proteins secreted by numerous species of proteobacteria. TALE polypeptides contain a nucleic acid binding domain composed of tandem repeats of highly conserved monomer polypeptides that are predominantly 33, 34 or 35 amino acids in length and that differ from each other mainly in amino acid positions 12 and 13. In advantageous embodiments the nucleic acid is DNA. As used herein, the term “polypeptide monomers”, “TALE monomers” or “monomers” will be used to refer to the highly conserved repetitive polypeptide sequences within the TALE nucleic acid binding domain and the term “repeat variable di-residues” or “RVD” will be used to refer to the highly variable amino acids at positions 12 and 13 of the polypeptide monomers. As provided throughout the disclosure, the amino acid residues of the RVD are depicted using the IUPAC single letter code for amino acids. A general representation of a TALE monomer which is comprised within the DNA binding domain is X1-11-(X12X13)-X1-33 or 34 or 35, where the subscript indicates the amino acid position and X represents any amino acid. X12X13 indicate the RVDs. In some polypeptide monomers, the variable amino acid at position 13 is missing or absent and in such monomers, the RVD consists of a single amino acid. In such cases the RVD may be alternatively represented as X*, where X represents X12 and (*) indicates that X13 is absent. The DNA binding domain comprises several repeats of TALE monomers and this may be represented as (X1-11-(X12X13)-X14-33 or 34 or 35)z, where in an advantageous embodiment, z is at least 5 to 40. In a further advantageous embodiment, z is at least 10 to 26.


The TALE monomers can have a nucleotide binding affinity that is determined by the identity of the amino acids in its RVD. For example, polypeptide monomers with an RVD of NI can preferentially bind to adenine (A), monomers with an RVD of NG can preferentially bind to thymine (T), monomers with an RVD of HD can preferentially bind to cytosine (C) and monomers with an RVD of NN can preferentially bind to both adenine (A) and guanine (G). In some embodiments, monomers with an RVD of IG can preferentially bind to T. Thus, the number and order of the polypeptide monomer repeats in the nucleic acid binding domain of a TALE determines its nucleic acid target specificity. In some embodiments, monomers with an RVD of NS can recognize all four base pairs and can bind to A, T, G or C. The structure and function of TALEs is further described in, for example, Moscou et al., Science 326:1501 (2009); Boch et al., Science 326:1509-1512 (2009); and Zhang et al., Nature Biotechnology 29:149-153 (2011).


The polypeptides used in methods of the invention can be isolated, non-naturally occurring, recombinant or engineered nucleic acid-binding proteins that have nucleic acid or DNA binding regions containing polypeptide monomer repeats that are designed to target specific nucleic acid sequences.


As described herein, polypeptide monomers having an RVD of HN or NH preferentially bind to guanine and thereby allow the generation of TALE polypeptides with high binding specificity for guanine containing target nucleic acid sequences. In some embodiments, polypeptide monomers having RVDs RN, NN, NK, SN, NH, KN, HN, NQ, HH, RG, KH, RH and SS can preferentially bind to guanine. In some embodiments, polypeptide monomers having RVDs RN, NK, NQ, HH, KH, RH, SS and SN can preferentially bind to guanine and can thus allow the generation of TALE polypeptides with high binding specificity for guanine containing target nucleic acid sequences. In some embodiments, polypeptide monomers having RVDs HH, KH, NH, NK, NQ, RH, RN and SS can preferentially bind to guanine and thereby allow the generation of TALE polypeptides with high binding specificity for guanine containing target nucleic acid sequences. In some embodiments, the RVDs that have high binding specificity for guanine are RN, NH RH and KH. Furthermore, polypeptide monomers having an RVD of NV can preferentially bind to adenine and guanine. In some embodiments, monomers having RVDs of H*, HA, KA, N*, NA, NC, NS, RA, and S* bind to adenine, guanine, cytosine and thymine with comparable affinity.


The predetermined N-terminal to C-terminal order of the one or more polypeptide monomers of the nucleic acid or DNA binding domain determines the corresponding predetermined target nucleic acid sequence to which the polypeptides of the invention will bind. As used herein the monomers and at least one or more half monomers are “specifically ordered to target” the genomic locus or gene of interest. In plant genomes, the natural TALE-binding sites always begin with a thymine (T), which may be specified by a cryptic signal within the non-repetitive N-terminus of the TALE polypeptide; in some cases, this region may be referred to as repeat 0. In animal genomes, TALE binding sites do not necessarily have to begin with a thymine (T) and polypeptides of the invention may target DNA sequences that begin with T, A, G or C. The tandem repeat of TALE monomers always ends with a half-length repeat or a stretch of sequence that may share identity with only the first 20 amino acids of a repetitive full-length TALE monomer and this half repeat may be referred to as a half-monomer. Therefore, it follows that the length of the nucleic acid or DNA being targeted is equal to the number of full monomers plus two.


As described in Zhang et al., Nature Biotechnology 29:149-153 (2011), TALE polypeptide binding efficiency may be increased by including amino acid sequences from the “capping regions” that are directly N-terminal or C-terminal of the DNA binding region of naturally occurring TALEs into the engineered TALEs at positions N-terminal or C-terminal of the engineered TALE DNA binding region. Thus, in certain embodiments, the TALE polypeptides described herein further comprise an N-terminal capping region and/or a C-terminal capping region.


An exemplary amino acid sequence of a N-terminal capping region is:









(SEQ ID NO: 9)


MDPIRSRTPSPARELLSGPQPDGVQPTADRGVSPPAGGP





LDGLPARRTMSRTRLPSPPAPSPAFSADSFSDLLRQFDPSLENTS





LFDSLPPFGAHHTEAATGEWDEVQSGLRAADAPPPTMRVAVTA





ARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKP





KVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVKYQD





MIAALPEATHEAIVGVGKQWSGARALEALLTVAGELRGPPLQL





DTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLN






An exemplary amino acid sequence of a C-terminal capping region is:











(SEQ ID NO: 10)



RPALESIVAQLSRPDPALAALTNDHLVALACLGGRPAL







DAVKKGLPHAPALIKRTNRRIPERTSHRVADHAQVVRVLGFFQ







CHSHPAQAFDDAMTQFGMSRHGLLQLFRRVGVTELEARSGTLP







PASQRWDRILQASGMKRAKPSPTSTQTPDQASLHAFADSLERD







LDAPSPMHEGDQTRAS






As used herein the predetermined “N-terminus” to “C terminus” orientation of the N-terminal capping region, the DNA binding domain comprising the repeat TALE monomers and the C-terminal capping region provide structural basis for the organization of different domains in the d-TALEs or polypeptides of the invention.


The entire N-terminal and/or C-terminal capping regions are not necessary to enhance the binding activity of the DNA binding region. Therefore, in certain embodiments, fragments of the N-terminal and/or C-terminal capping regions are included in the TALE polypeptides described herein.


In certain embodiments, the TALE polypeptides described herein contain a N-terminal capping region fragment that included at least 10, 20, 30, 40, 50, 54, 60, 70, 80, 87, 90, 94, 100, 102, 110, 117, 120, 130, 140, 147, 150, 160, 170, 180, 190, 200, 210, 220, 230, 240, 250, 260 or 270 amino acids of an N-terminal capping region. In certain embodiments, the N-terminal capping region fragment amino acids are of the C-terminus (the DNA-binding region proximal end) of an N-terminal capping region. As described in Zhang et al., Nature Biotechnology 29:149-153 (2011), N-terminal capping region fragments that include the C-terminal 240 amino acids enhance binding activity equal to the full length capping region, while fragments that include the C-terminal 147 amino acids retain greater than 80% of the efficacy of the full length capping region, and fragments that include the C-terminal 117 amino acids retain greater than 50% of the activity of the full-length capping region.


In some embodiments, the TALE polypeptides described herein contain a C-terminal capping region fragment that included at least 6, 10, 20, 30, 37, 40, 50, 60, 68, 70, 80, 90, 100, 110, 120, 127, 130, 140, 150, 155, 160, 170, 180 amino acids of a C-terminal capping region. In certain embodiments, the C-terminal capping region fragment amino acids are of the N-terminus (the DNA-binding region proximal end) of a C-terminal capping region. As described in Zhang et al., Nature Biotechnology 29:149-153 (2011), C-terminal capping region fragments that include the C-terminal 68 amino acids enhance binding activity equal to the full-length capping region, while fragments that include the C-terminal 20 amino acids retain greater than 50% of the efficacy of the full-length capping region.


In certain embodiments, the capping regions of the TALE polypeptides described herein do not need to have identical sequences to the capping region sequences provided herein. Thus, in some embodiments, the capping region of the TALE polypeptides described herein have sequences that are at least 50%, 60%, 70%, 80%, 85%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98% or 99% identical or share identity to the capping region amino acid sequences provided herein. Sequence identity is related to sequence homology. Homology comparisons may be conducted by eye, or more usually, with the aid of readily available sequence comparison programs. These commercially available computer programs may calculate percent (%) homology between two or more sequences and may also calculate the sequence identity shared by two or more amino acid or nucleic acid sequences. In some preferred embodiments, the capping region of the TALE polypeptides described herein have sequences that are at least 95% identical or share identity to the capping region amino acid sequences provided herein.


Sequence homologies can be generated by any of a number of computer programs known in the art, which include but are not limited to BLAST or FASTA. Suitable computer programs for carrying out alignments like the GCG Wisconsin Bestfit package may also be used. Once the software has produced an optimal alignment, it is possible to calculate % homology, preferably % sequence identity. The software typically does this as part of the sequence comparison and generates a numerical result.


In some embodiments described herein, the TALE polypeptides of the invention include a nucleic acid binding domain linked to the one or more effector domains. The terms “effector domain” or “regulatory and functional domain” refer to a polypeptide sequence that has an activity other than binding to the nucleic acid sequence recognized by the nucleic acid binding domain. By combining a nucleic acid binding domain with one or more effector domains, the polypeptides of the invention may be used to target the one or more functions or activities mediated by the effector domain to a particular target DNA sequence to which the nucleic acid binding domain specifically binds.


In some embodiments of the TALE polypeptides described herein, the activity mediated by the effector domain is a biological activity. For example, in some embodiments the effector domain is a transcriptional inhibitor (i.e., a repressor domain), such as an mSin interaction domain (SID). SID4X domain or a Kruppel-associated box (KRAB) or fragments of the KRAB domain. In some embodiments the effector domain is an enhancer of transcription (i.e., an activation domain), such as the VP16, VP64 or p65 activation domain. In some embodiments, the nucleic acid binding is linked, for example, with an effector domain that includes but is not limited to a transposase, integrase, recombinase, resolvase, invertase, protease, DNA methyltransferase, DNA demethylase, histone acetylase, histone deacetylase, nuclease, transcriptional repressor, transcriptional activator, transcription factor recruiting, protein nuclear-localization signal or cellular uptake signal.


In some embodiments, the effector domain is a protein domain which exhibits activities which include but are not limited to transposase activity, integrase activity, recombinase activity, resolvase activity, invertase activity, protease activity, DNA methyltransferase activity, DNA demethylase activity, histone acetylase activity, histone deacetylase activity, nuclease activity, nuclear-localization signaling activity, transcriptional repressor activity, transcriptional activator activity, transcription factor recruiting activity, or cellular uptake signaling activity. Other preferred embodiments of the invention may include any combination of the activities described herein.


Meganucleases

In some embodiments, a meganuclease or system thereof can be used to modify a polynucleotide. Meganucleases, which are endodeoxyribonucleases characterized by a large recognition site (double-stranded DNA sequences of 12 to 40 base pairs). Exemplary methods for using meganucleases can be found in U.S. Pat. Nos. 8,163,514, 8,133,697, 8,021,867, 8,119,361, 8,119,381, 8,124,369, and 8,129,134, which are specifically incorporated by reference.


Sequences Related to Nucleus Targeting and Transportation

In some embodiments, one or more components (e.g., the Cas protein and/or deaminase, Zn Finger protein, TALE, or meganuclease) in the composition for engineering cells may comprise one or more sequences related to nucleus targeting and transportation. Such sequence may facilitate the one or more components in the composition for targeting a sequence within a cell. In order to improve targeting of the CRISPR-Cas protein and/or the nucleotide deaminase protein or catalytic domain thereof used in the methods of the present disclosure to the nucleus, it may be advantageous to provide one or both of these components with one or more nuclear localization sequences (NLSs).


In some embodiments, the NLSs used in the context of the present disclosure are heterologous to the proteins. Non-limiting examples of NLSs include an NLS sequence derived from: the NLS of the SV40 virus large T-antigen, having the amino acid sequence PKKKRKV (SEQ ID NO: 11) or PKKKRKVEAS (SEQ ID NO: 12); the NLS from nucleoplasmin (e.g., the nucleoplasmin bipartite NLS with the sequence KRPAATKKAGQAKKKK (SEQ ID NO: 13)); the c-myc NLS having the amino acid sequence PAAKRVKLD (SEQ ID NO: 14) or RQRRNELKRSP (SEQ ID NO: 15); the hRNPA1 M9 NLS having the sequence NQSSNFGPMKGGNFGGRSSGPYGGGGQYFAKPRNQGGY (SEQ ID NO: 16); the sequence RMRIZFKNKGKDTAELRRRRVEVSVELRKAKKDEQILKRRNV (SEQ ID NO: 17) of the IBB domain from importin-alpha; the sequences VSRKRPRP (SEQ ID NO: 18) and PPKKARED (SEQ ID NO: 19) of the myoma T protein; the sequence PQPKKKPL (SEQ ID NO: 20) of human p53; the sequence SALIKKKKKMAP (SEQ ID NO: 21) of mouse c-abl IV; the sequences DRLRR (SEQ ID NO: 22) and PKQKKRK (SEQ ID NO: 23) of the influenza virus NS1; the sequence RKLKKKIKKL (SEQ ID NO: 24) of the Hepatitis virus delta antigen; the sequence REKKKFLKRR (SEQ ID NO: 25) of the mouse Mxl protein; the sequence KRKGDEVDGVDEVAKKKSKK (SEQ ID NO: 26) of the human poly(ADP-ribose) polymerase; and the sequence RKCLQAGMNLEARKTKK (SEQ ID NO: 27) of the steroid hormone receptors (human) glucocorticoid. In general, the one or more NLSs are of sufficient strength to drive accumulation of the DNA-targeting Cas protein in a detectable amount in the nucleus of a eukaryotic cell. In general, strength of nuclear localization activity may derive from the number of NLSs in the CRISPR-Cas protein, the particular NLS(s) used, or a combination of these factors. Detection of accumulation in the nucleus may be performed by any suitable technique. For example, a detectable marker may be fused to the nucleic acid-targeting protein, such that location within a cell may be visualized, such as in combination with a means for detecting the location of the nucleus (e.g., a stain specific for the nucleus such as DAPI). Cell nuclei may also be isolated from cells, the contents of which may then be analyzed by any suitable process for detecting protein, such as immunohistochemistry, Western blot, or enzyme activity assay. Accumulation in the nucleus may also be determined indirectly, such as by an assay for the effect of nucleic acid-targeting complex formation (e.g., assay for deaminase activity) at the target sequence, or assay for altered gene expression activity affected by DNA-targeting complex formation and/or DNA-targeting), as compared to a control not exposed to the CRISPR-Cas protein and deaminase protein, or exposed to a CRISPR-Cas and/or deaminase protein lacking the one or more NLSs.


The CRISPR-Cas and/or nucleotide deaminase proteins may be provided with 1 or more, such as with, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more heterologous NLSs. In some embodiments, the proteins comprises about or more than about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more NLSs at or near the amino-terminus, about or more than about 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, or more NLSs at or near the carboxy-terminus, or a combination of these (e.g., zero or at least one or more NLS at the amino-terminus and zero or at one or more NLS at the carboxy terminus). When more than one NLS is present, each may be selected independently of the others, such that a single NLS may be present in more than one copy and/or in combination with one or more other NLSs present in one or more copies. In some embodiments, an NLS is considered near the N- or C-terminus when the nearest amino acid of the NLS is within about 1, 2, 3, 4, 5, 10, 15, 20, 25, 30, 40, 50, or more amino acids along the polypeptide chain from the N- or C-terminus. In preferred embodiments of the CRISPR-Cas proteins, an NLS attached to the C-terminal of the protein.


In certain embodiments, the CRISPR-Cas protein and the deaminase protein are delivered to the cell or expressed within the cell as separate proteins. In these embodiments, each of the CRISPR-Cas and deaminase protein can be provided with one or more NLSs as described herein. In certain embodiments, the CRISPR-Cas and deaminase proteins are delivered to the cell or expressed with the cell as a fusion protein. In these embodiments one or both of the CRISPR-Cas and deaminase protein is provided with one or more NLSs. Where the nucleotide deaminase is fused to an adaptor protein (such as MS2) as described above, the one or more NLS can be provided on the adaptor protein, provided that this does not interfere with aptamer binding. In particular embodiments, the one or more NLS sequences may also function as linker sequences between the nucleotide deaminase and the CRISPR-Cas protein.


In certain embodiments, guides of the disclosure comprise specific binding sites (e.g. aptamers) for adapter proteins, which may be linked to or fused to an nucleotide deaminase or catalytic domain thereof. When such a guide forms a CRISPR complex (e.g., CRISPR-Cas protein binding to guide and target) the adapter proteins bind and, the nucleotide deaminase or catalytic domain thereof associated with the adapter protein is positioned in a spatial orientation which is advantageous for the attributed function to be effective.


The skilled person will understand that modifications to the guide which allow for binding of the adapter+nucleotide deaminase, but not proper positioning of the adapter+nucleotide deaminase (e.g., due to steric hindrance within the three dimensional structure of the CRISPR complex) are modifications which are not intended. The one or more modified guide may be modified at the tetra loop, the stem loop 1, stem loop 2, or stem loop 3, as described herein, preferably at either the tetra loop or stem loop 2, and in some cases at both the tetra loop and stem loop 2.


In some embodiments, a component (e.g., the dead Cas protein, the nucleotide deaminase protein or catalytic domain thereof, or a combination thereof) in the systems may comprise one or more nuclear export signals (NES), one or more nuclear localization signals (NLS), or any combinations thereof. In some cases, the NES may be an HIV Rev NES. In certain cases, the NES may be MAPK NES. When the component is a protein, the NES or NLS may be at the C terminus of component. Alternatively, or additionally, the NES or NLS may be at the N terminus of component. In some examples, the Cas protein and optionally said nucleotide deaminase protein or catalytic domain thereof comprise one or more heterologous nuclear export signal(s) (NES(s)) or nuclear localization signal(s) (NLS(s)), preferably an HIV Rev NES or MAPK NES, preferably C-terminal.


Templates

In some embodiments, the composition for engineering cells comprises a template, e.g., a recombination template. A template may be a component of another vector as described herein, contained in a separate vector, or provided as a separate polynucleotide. In some embodiments, a recombination template is designed to serve as a template in homologous recombination, such as within or near a target sequence nicked or cleaved by a nucleic acid-targeting effector protein as a part of a nucleic acid-targeting complex.


In an embodiment, the template nucleic acid alters the sequence of the target position. In an embodiment, the template nucleic acid results in the incorporation of a modified, or non-naturally occurring base into the target nucleic acid.


The template sequence may undergo a breakage mediated or catalyzed recombination with the target sequence. In an embodiment, the template nucleic acid may include sequence that corresponds to a site on the target sequence that is cleaved by a Cas protein mediated cleavage event. In an embodiment, the template nucleic acid may include sequence that corresponds to both, a first site on the target sequence that is cleaved in a first Cas protein mediated event, and a second site on the target sequence that is cleaved in a second Cas protein mediated event.


In certain embodiments, the template nucleic acid can include sequence which results in an alteration in the coding sequence of a translated sequence, e.g., one which results in the substitution of one amino acid for another in a protein product, e.g., transforming a mutant allele into a wild type allele, transforming a wild type allele into a mutant allele, and/or introducing a stop codon, insertion of an amino acid residue, deletion of an amino acid residue, or a nonsense mutation. In certain embodiments, the template nucleic acid can include sequence which results in an alteration in a non-coding sequence, e.g., an alteration in an exon or in a 5′ or 3′ non-translated or non-transcribed region. Such alterations include an alteration in a control element, e.g., a promoter, enhancer, and an alteration in a cis-acting or trans-acting control element.


A template nucleic acid having homology with a target position in a target gene may be used to alter the structure of a target sequence. The template sequence may be used to alter an unwanted structure, e.g., an unwanted or mutant nucleotide. The template nucleic acid may include sequence which, when integrated, results in: decreasing the activity of a positive control element; increasing the activity of a positive control element; decreasing the activity of a negative control element; increasing the activity of a negative control element; decreasing the expression of a gene; increasing the expression of a gene; increasing resistance to a disorder or disease; increasing resistance to viral entry; correcting a mutation or altering an unwanted amino acid residue conferring, increasing, abolishing or decreasing a biological property of a gene product, e.g., increasing the enzymatic activity of an enzyme, or increasing the ability of a gene product to interact with another molecule.


The template nucleic acid may include sequence which results in: a change in sequence of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12 or more nucleotides of the target sequence.


A template polynucleotide may be of any suitable length, such as about or more than about 10, 15, 20, 25, 50, 75, 100, 150, 200, 500, 1000, or more nucleotides in length. In an embodiment, the template nucleic acid may be 20+/−10, 30+/−10, 40+/−10, 50+/−10, 60+/−10, 70+/−10, 80+/−10, 90+/−10, 100+/−10, 1 10+/−10, 120+/−10, 130+/−10, 140+/−10, 150+/−10, 160+/−10, 170+/−10, 1 80+/−10, 190+/−10, 200+/−10, 210+/−10, of 220+/−10 nucleotides in length. In an embodiment, the template nucleic acid may be 30+/−20, 40+/−20, 50+/−20, 60+/−20, 70+/−20, 80+/−20, 90+/−20, 100+/−20, 1 10+/−20, 120+/−20, 130+/−20, 140+/−20, 150+/−20, 160+/−20, 170+/−20, 180+/−20, 190+/−20, 200+/−20, 210+/−20, of 220+/−20 nucleotides in length. In an embodiment, the template nucleic acid is 10 to 1,000, 20 to 900, 30 to 800, 40 to 700, 50 to 600, 50 to 500, 50 to 400, 50 to300, 50 to 200, or 50 to 100 nucleotides in length.


In some embodiments, the template polynucleotide is complementary to a portion of a polynucleotide comprising the target sequence. When optimally aligned, a template polynucleotide might overlap with one or more nucleotides of a target sequences (e.g., about or more than about 1, 5, 10, 15, 20, 25, 30, 35, 40, 45, 50, 60, 70, 80, 90, 100 or more nucleotides). In some embodiments, when a template sequence and a polynucleotide comprising a target sequence are optimally aligned, the nearest nucleotide of the template polynucleotide is within about 1, 5, 10, 15, 20, 25, 50, 75, 100, 200, 300, 400, 500, 1000, 5000, 10000, or more nucleotides from the target sequence.


The exogenous polynucleotide template comprises a sequence to be integrated (e.g., a mutated gene). The sequence for integration may be a sequence endogenous or exogenous to the cell. Examples of a sequence to be integrated include polynucleotides encoding a protein or a non-coding RNA (e.g., a microRNA). Thus, the sequence for integration may be operably linked to an appropriate control sequence or sequences. Alternatively, the sequence to be integrated may provide a regulatory function.


An upstream or downstream sequence may comprise from about 20 bp to about 2500 bp, for example, about 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, 1600, 1700, 1800, 1900, 2000, 2100, 2200, 2300, 2400, or 2500 bp. In some methods, the exemplary upstream or downstream sequence have about 200 bp to about 2000 bp, about 600 bp to about 1000 bp, or more particularly about 700 bp to about 1000.


An upstream or downstream sequence may comprise from about 20 bp to about 2500 bp, for example, about 50, 100, 200, 300, 400, 500, 600, 700, 800, 900, 1000, 1100, 1200, 1300, 1400, 1500, 1600, 1700, 1800, 1900, 2000, 2100, 2200, 2300, 2400, or 2500 bp. In some methods, the exemplary upstream or downstream sequence have about 200 bp to about 2000 bp, about 600 bp to about 1000 bp, or more particularly about 700 bp to about 1000


In certain embodiments, one or both homology arms may be shortened to avoid including certain sequence repeat elements. For example, a 5′ homology arm may be shortened to avoid a sequence repeat element. In other embodiments, a 3′ homology arm may be shortened to avoid a sequence repeat element. In some embodiments, both the 5′ and the 3′ homology arms may be shortened to avoid including certain sequence repeat elements.


In some methods, the exogenous polynucleotide template may further comprise a marker. Such a marker may make it easy to screen for targeted integrations. Examples of suitable markers include restriction sites, fluorescent proteins, or selectable markers. The exogenous polynucleotide template of the disclosure can be constructed using recombinant techniques (see, for example, Sambrook et al., 2001 and Ausubel et al., 1996).


In certain embodiments, a template nucleic acid for correcting a mutation may be designed for use as a single-stranded oligonucleotide. When using a single-stranded oligonucleotide, 5′ and 3′ homology arms may range up to about 200 base pairs (bp) in length, e.g., at least 25, 50, 75, 100, 125, 150, 175, or 200 bp in length.


In certain embodiments, a template nucleic acid for correcting a mutation may be designed for use with a homology-independent targeted integration system. Suzuki et al. describe in vivo genome editing via CRISPR/Cas9 mediated homology-independent targeted integration (2016, Nature 540:144-149). Schmid-Burgk, et al. describe use of the CRISPR-Cas9 system to introduce a double-strand break (DSB) at a user-defined genomic location and insertion of a universal donor DNA (Nat Commun. 2016 Jul. 28; 7:12338). Gao, et al. describe “Plug-and-Play Protein Modification Using Homology-Independent Universal Genome Engineering” (Neuron. 2019 Aug. 21; 103(4):583-597).


RNAi

In some embodiments, the genetic modulating agents may be interfering RNAs. In certain embodiments, diseases caused by a dominant mutation in a gene is targeted by silencing the mutated gene using RNAi. In some cases, the nucleotide sequence may comprise coding sequence for one or more interfering RNAs. In certain examples, the nucleotide sequence may be interfering RNA (RNAi). As used herein, the term “RNAi” refers to any type of interfering RNA, including but not limited to, siRNAi, shRNAi, endogenous microRNA and artificial microRNA. For instance, it includes sequences previously identified as siRNA, regardless of the mechanism of down-stream processing of the RNA (i.e., although siRNAs are believed to have a specific method of in vivo processing resulting in the cleavage of mRNA, such sequences can be incorporated into the vectors in the context of the flanking sequences described herein). The term “RNAi” can include both gene silencing RNAi molecules, and also RNAi effector molecules which activate the expression of a gene.


In certain embodiments, a modulating agent may comprise silencing one or more endogenous genes. As used herein, “gene silencing” or “gene silenced” in reference to an activity of an RNAi molecule, for example a siRNA or miRNA refers to a decrease in the mRNA level in a cell for a target gene by at least about 5%, about 10%, about 20%, about 30%, about 40%, about 50%, about 60%, about 70%, about 80%, about 90%, about 95%, about 99%, about 100% of the mRNA level found in the cell without the presence of the miRNA or RNA interference molecule. In one preferred embodiment, the mRNA levels are decreased by at least about 70%, about 80%, about 90%, about 95%, about 99%, about 100%.


As used herein, a “siRNA” refers to a nucleic acid that forms a double stranded RNA, which double stranded RNA has the ability to reduce or inhibit expression of a gene or target gene when the siRNA is present or expressed in the same cell as the target gene. The double stranded RNA siRNA can be formed by the complementary strands. In one embodiment, a siRNA refers to a nucleic acid that can form a double stranded siRNA. The sequence of the siRNA can correspond to the full-length target gene, or a subsequence thereof. Typically, the siRNA is at least about 15-50 nucleotides in length (e.g., each complementary sequence of the double stranded siRNA is about 15-50 nucleotides in length, and the double stranded siRNA is about 15-50 base pairs in length, preferably about 19-30 base nucleotides, preferably about 20-25 nucleotides in length, e.g., 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 nucleotides in length).


As used herein “shRNA” or “small hairpin RNA” (also called stem loop) is a type of siRNA. In one embodiment, these shRNAs are composed of a short, e.g., about 19 to about 25 nucleotide, antisense strand, followed by a nucleotide loop of about 5 to about 9 nucleotides, and the analogous sense strand. Alternatively, the sense strand can precede the nucleotide loop structure and the antisense strand can follow.


The terms “microRNA” or “miRNA”, used interchangeably herein, are endogenous RNAs, some of which are known to regulate the expression of protein-coding genes at the posttranscriptional level. Endogenous microRNAs are small RNAs naturally present in the genome that are capable of modulating the productive utilization of mRNA. The term artificial microRNA includes any type of RNA sequence, other than endogenous microRNA, which is capable of modulating the productive utilization of mRNA. MicroRNA sequences have been described in publications such as Lim, et al., Genes & Development, 17, p. 991-1008 (2003), Lim et al Science 299, 1540 (2003), Lee and Ambros Science, 294, 862 (2001), Lau et al., Science 294, 858-861 (2001), Lagos-Quintana et al, Current Biology, 12, 735-739 (2002), Lagos Quintana et al, Science 294, 853-857 (2001), and Lagos-Quintana et al, RNA, 9, 175-179 (2003), which are incorporated by reference. Multiple microRNAs can also be incorporated into a precursor molecule. Furthermore, miRNA-like stem-loops can be expressed in cells as a vehicle to deliver artificial miRNAs and short interfering RNAs (siRNAs) for the purpose of modulating the expression of endogenous genes through the miRNA and or RNAi pathways.


As used herein, “double stranded RNA” or “dsRNA” refers to RNA molecules that are comprised of two strands. Double-stranded molecules include those comprised of a single RNA molecule that doubles back on itself to form a two-stranded structure. For example, the stem loop structure of the progenitor molecules from which the single-stranded miRNA is derived, called the pre-miRNA (Bartel et al. 2004. Cell 1 16:281-297), comprises a dsRNA molecule.


Adoptive Cell Transfer

In certain embodiments, non-pathogenic Th1 cells are used to treat autoimmunity by adoptively transferring the cells to a subject in need thereof. In certain embodiments, non-pathogenic Th1 cells are generated by treating Th1 cells or naive CD4 T cells with an agent capable of decreasing expression of IL-23R. In certain embodiments, non-pathogenic Th1 cells are generated by treating Th1 cells or naive CD4 T cells with an agent capable of decreasing expression of one or more of CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW. For example, Th1 cells can be modified ex vivo using a genetic modifying agent (e.g., CRISPR, RNAi). In certain embodiments, pathogenic Th1 cells are used in adoptive cell transfer to treat cancer (e.g., in vitro differentiated Th1 cells, as described herein). In certain embodiments, the Th1 cells are modified ex vivo to express a tumor antigen specific T cell receptor (TCR).


As used herein, “ACT”, “adoptive cell therapy” and “adoptive cell transfer” may be used interchangeably. In certain embodiments, Adoptive cell therapy (ACT) can refer to the transfer of cells, most commonly immune-derived cells, back into the same patient or into a new recipient host with the goal of transferring the immunologic functionality and characteristics into the new host. If possible, use of autologous cells helps the recipient by minimizing GVHD issues. The adoptive transfer of autologous tumor infiltrating lymphocytes (TIL) (Zacharakis et al., (2018) Nat Med. 2018 June; 24(6):724-730; Besser et al., (2010) Clin. Cancer Res 16 (9) 2646-55; Dudley et al., (2002) Science 298 (5594): 850-4; and Dudley et al., (2005) Journal of Clinical Oncology 23 (10): 2346-57.) or genetically re-directed peripheral blood mononuclear cells (Johnson et al., (2009) Blood 114 (3): 535-46; and Morgan et al., (2006) Science 314(5796) 126-9) has been used to successfully treat patients with advanced solid tumors, including melanoma, metastatic breast cancer and colorectal carcinoma, as well as patients with CD19-expressing hematologic malignancies (Kalos et al., (2011) Science Translational Medicine 3 (95): 95ra73). In certain embodiments, allogenic cells immune cells are transferred (see, e.g., Ren et al., (2017) Clin Cancer Res 23 (9) 2255-2266). As described further herein, allogenic cells can be edited to reduce alloreactivity and prevent graft-versus-host disease. Thus, use of allogenic cells allows for cells to be obtained from healthy donors and prepared for use in patients as opposed to preparing autologous cells from a patient after diagnosis.


Aspects of the invention involve the adoptive transfer of immune system cells, such as T cells, specific for selected antigens, such as tumor associated antigens or tumor specific neoantigens (see, e.g., Maus et al., 2014, Adoptive Immunotherapy for Cancer or Viruses, Annual Review of Immunology, Vol. 32: 189-225; Rosenberg and Restifo, 2015, Adoptive cell transfer as personalized immunotherapy for human cancer, Science Vol. 348 no. 6230 pp. 62-68; Restifo et al., 2015, Adoptive immunotherapy for cancer: harnessing the T cell response. Nat. Rev. Immunol. 12(4): 269-281; and Jenson and Riddell, 2014, Design and implementation of adoptive therapy with chimeric antigen receptor-modified T cells. Immunol Rev. 257(1): 127-144; and Rajasagi et al., 2014, Systematic identification of personal tumor-specific neoantigens in chronic lymphocytic leukemia. Blood. 2014 Jul. 17; 124(3):453-62).


In certain embodiments, an antigen (such as a tumor antigen) to be targeted in adoptive cell therapy (such as particularly CAR or TCR T-cell therapy) of a disease (such as particularly of tumor or cancer) may be selected from a group consisting of: MR1 (see, e.g., Crowther, et al., 2020, Genome-wide CRISPR-Cas9 screening reveals ubiquitous T cell cancer targeting via the monomorphic MHC class I-related protein MR1, Nature Immunology volume 21, pages178-185), B cell maturation antigen (BCMA) (see, e.g., Friedman et al., Effective Targeting of Multiple BCMA-Expressing Hematological Malignancies by Anti-BCMA CAR T Cells, Hum Gene Ther. 2018 Mar. 8; Berdeja J G, et al. Durable clinical responses in heavily pretreated patients with relapsed/refractory multiple myeloma: updated results from a multicenter study of bb2121 anti-Bcma CAR T cell therapy. Blood. 2017; 130:740; and Mouhieddine and Ghobrial, Immunotherapy in Multiple Myeloma: The Era of CAR T Cell Therapy, Hematologist, May-June 2018, Volume 15, issue 3); PSA (prostate-specific antigen); prostate-specific membrane antigen (PSMA); PSCA (Prostate stem cell antigen); Tyrosine-protein kinase transmembrane receptor ROR1; fibroblast activation protein (FAP); Tumor-associated glycoprotein 72 (TAG72); Carcinoembryonic antigen (CEA); Epithelial cell adhesion molecule (EPCAM); Mesothelin; Human Epidermal growth factor Receptor 2 (ERBB2 (Her2/neu)); Prostase; Prostatic acid phosphatase (PAP); elongation factor 2 mutant (ELF2M); Insulin-like growth factor 1 receptor (IGF-1R); gplOO; BCR-ABL (breakpoint cluster region-Abelson); tyrosinase; New York esophageal squamous cell carcinoma 1 (NY-ESO-1); κ-light chain, LAGE (L antigen); MAGE (melanoma antigen); Melanoma-associated antigen 1 (MAGE-A1); MAGE A3; MAGE A6; legumain; Human papillomavirus (HPV) E6; HPV E7; prostein; survivin; PCTA1 (Galectin 8); Melan-A/MART-1; Ras mutant; TRP-1 (tyrosinase related protein 1, or gp75); Tyrosinase-related Protein 2 (TRP2); TRP-2/INT2 (TRP-2/intron 2); RAGE (renal antigen); receptor for advanced glycation end products 1 (RAGE1); Renal ubiquitous 1, 2 (RU1, RU2); intestinal carboxyl esterase (iCE); Heat shock protein 70-2 (HSP70-2) mutant; thyroid stimulating hormone receptor (TSHR); CD123; CD171; CD19; CD20; CD22; CD26; CD30; CD33; CD44v7/8 (cluster of differentiation 44, exons 7/8); CD53; CD92; CD100; CD148; CD150; CD200; CD261; CD262; CD362; CS-1 (CD2 subset 1, CRACC, SLAMF7, CD319, and 19A24); C-type lectin-like molecule-1 (CLL-1); ganglioside GD3 (aNeu5Ac(2-8)aNeu5Ac(2-3)bDGalp(1-4)bDGlcp(1-1)Cer); Tn antigen (Tn Ag); Fms-Like Tyrosine Kinase 3 (FLT3); CD38; CD138; CD44v6; B7H3 (CD276); KIT (CD117); Interleukin-13 receptor subunit alpha-2 (IL-13Ra2); Interleukin 11 receptor alpha (IL-11Ra); prostate stem cell antigen (PSCA); Protease Serine 21 (PRSS21); vascular endothelial growth factor receptor 2 (VEGFR2); Lewis(Y) antigen; CD24; Platelet-derived growth factor receptor beta (PDGFR-beta); stage-specific embryonic antigen-4 (SSEA-4); Mucin 1, cell surface associated (MUC1); mucin 16 (MUC16); epidermal growth factor receptor (EGFR); epidermal growth factor receptor variant III (EGFRvIII); neural cell adhesion molecule (NCAM); carbonic anhydrase IX (CAIX); Proteasome (Prosome, Macropain) Subunit, Beta Type, 9 (LMP2); ephrin type-A receptor 2 (EphA2); Ephrin B2; Fucosyl GM1; sialyl Lewis adhesion molecule (sLe); ganglioside GM3 (aNeu5Ac(2-3)bDGalp(1-4)bDGlcp(1-1)Cer); TGS5; high molecular weight-melanoma-associated antigen (HMWMAA); o-acetyl-GD2 ganglioside (OAcGD2); Folate receptor alpha; Folate receptor beta; tumor endothelial marker 1 (TEM1/CD248); tumor endothelial marker 7-related (TEM7R); claudin 6 (CLDN6); G protein-coupled receptor class C group 5, member D (GPRC5D); chromosome X open reading frame 61 (CXORF61); CD97; CD179a; anaplastic lymphoma kinase (ALK); Polysialic acid; placenta-specific 1 (PLAC1); hexasaccharide portion of globoH glycoceramide (GloboH); mammary gland differentiation antigen (NY-BR-1); uroplakin 2 (UPK2); Hepatitis A virus cellular receptor 1 (HAVCR1); adrenoceptor beta 3 (ADRB3); pannexin 3 (PANX3); G protein-coupled receptor 20 (GPR20); lymphocyte antigen 6 complex, locus K 9 (LY6K); Olfactory receptor 51E2 (OR51E2); TCR Gamma Alternate Reading Frame Protein (TARP); Wilms tumor protein (WTi); ETS translocation-variant gene 6, located on chromosome 12p (ETV6-AML); sperm protein 17 (SPA17); X Antigen Family, Member 1A (XAGEl); angiopoietin-binding cell surface receptor 2 (Tie 2); CT (cancer/testis (antigen)); melanoma cancer testis antigen-1 (MAD-CT-1); melanoma cancer testis antigen-2 (MAD-CT-2); Fos-related antigen 1; p53; p53 mutant; human Telomerase reverse transcriptase (hTERT); sarcoma translocation breakpoints; melanoma inhibitor of apoptosis (ML-IAP); ERG (transmembrane protease, serine 2 (TMPRSS2) ETS fusion gene); N-Acetyl glucosaminyl-transferase V (NA17); paired box protein Pax-3 (PAX3); Androgen receptor; Cyclin B1; Cyclin D1; v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog (MYCN); Ras Homolog Family Member C (RhoC); Cytochrome P450 1B1 (CYP1B1); CCCTC-Binding Factor (Zinc Finger Protein)-Like (BORIS); Squamous Cell Carcinoma Antigen Recognized By T Cells-1 or 3 (SART1, SART3); Paired box protein Pax-5 (PAX5); proacrosin binding protein sp32 (OY-TES1); lymphocyte-specific protein tyrosine kinase (LCK); A kinase anchor protein 4 (AKAP-4); synovial sarcoma, X breakpoint-1, -2, -3 or -4 (SSX1, SSX2, SSX3, SSX4); CD79a; CD79b; CD72; Leukocyte-associated immunoglobulin-like receptor 1 (LAIR1); Fc fragment of IgA receptor (FCAR); Leukocyte immunoglobulin-like receptor subfamily A member 2 (LILRA2); CD300 molecule-like family member f (CD300LF); C-type lectin domain family 12 member A (CLECi2A); bone marrow stromal cell antigen 2 (BST2); EGF-like module-containing mucin-like hormone receptor-like 2 (EMR2); lymphocyte antigen 75 (LY75); Glypican-3 (GPC3); Fc receptor-like 5 (FCRL5); mouse double minute 2 homolog (MDM2); livin; alphafetoprotein (AFP); transmembrane activator and CAML Interactor (TACI); B-cell activating factor receptor (BAFF-R); V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (KRAS); immunoglobulin lambda-like polypeptide 1 (IGLL1); 707-AP (707 alanine proline); ART-4 (adenocarcinoma antigen recognized by T4 cells); BAGE (B antigen; b-catenin/m, b-catenin/mutated); CAMEL (CTL-recognized antigen on melanoma); CAP1 (carcinoembryonic antigen peptide 1); CASP-8 (caspase-8); CDC27m (cell-division cycle 27 mutated); CDK4/m (cycline-dependent kinase 4 mutated); Cyp-B (cyclophilin B); DAM (differentiation antigen melanoma); EGP-2 (epithelial glycoprotein 2); EGP-40 (epithelial glycoprotein 40); Erbb2, 3, 4 (erythroblastic leukemia viral oncogene homolog-2, -3, 4); FBP (folate binding protein); fAchR (Fetal acetylcholine receptor); G250 (glycoprotein 250); GAGE (G antigen); GnT-V (N-acetylglucosaminyltransferase V); HAGE (helicose antigen); ULA-A (human leukocyte antigen-A); HST2 (human signet ring tumor 2); KIAA0205; KDR (kinase insert domain receptor); LDLR/FUT (low density lipid receptor/GDP L-fucose: b-D-galactosidase 2-a-L fucosyltransferase); L1CAM (L1 cell adhesion molecule); MC1R (melanocortin 1 receptor); Myosin/m (myosin mutated); MUM-1, -2, -3 (melanoma ubiquitous mutated 1, 2, 3); NA88-A (NA cDNA clone of patient M88); KG2D (Natural killer group 2, member D) ligands; oncofetal antigen (h5T4); p190 minor bcr-abl (protein of 190KD bcr-abl); Pml/RARa (promyelocytic leukaemia/retinoic acid receptor a); PRAME (preferentially expressed antigen of melanoma); SAGE (sarcoma antigen); TEL/AML1 (translocation Ets-family leukemia/acute myeloid leukemia 1); TPI/m (triosephosphate isomerase mutated); CD70; and any combination thereof.


In certain embodiments, ACT includes co-transferring CD4+Th1 cells and CD8+CTLs to induce a synergistic antitumour response (see, e.g., Li et al., Adoptive cell therapy with CD4+T helper 1 cells and CD8+ cytotoxic T cells enhances complete rejection of an established tumour, leading to generation of endogenous memory responses to non-targeted tumour epitopes. Clin Transl Immunology. 2017 October; 6(10): e160).


To guard against possible adverse reactions, engineered immunoresponsive cells may be equipped with a transgenic safety switch, in the form of a transgene that renders the cells vulnerable to exposure to a specific signal. For example, the herpes simplex viral thymidine kinase (TK) gene may be used in this way, for example by introduction into allogeneic T lymphocytes used as donor lymphocyte infusions following stem cell transplantation (Greco, et al., Improving the safety of cell therapy with the TK-suicide gene. Front. Pharmacol. 2015; 6: 95). In such cells, administration of a nucleoside prodrug such as ganciclovir or acyclovir causes cell death. Alternative safety switch constructs include inducible caspase 9, for example triggered by administration of a small-molecule dimerizer that brings together two nonfunctional icasp9 molecules to form the active enzyme. A wide variety of alternative approaches to implementing cellular proliferation controls have been described (see U.S. Patent Publication No. 20130071414; PCT Patent Publication WO2011146862; PCT Patent Publication WO2014011987; PCT Patent Publication WO2013040371; Zhou et al. BLOOD, 2014, 123/25:3895-3905; Di Stasi et al., The New England Journal of Medicine 2011; 365:1673-1683; Sadelain M, The New England Journal of Medicine 2011; 365:1735-173; Ramos et al., Stem Cells 28(6):1107-15 (2010)).


In a further refinement of adoptive therapies, genome editing may be used to tailor immunoresponsive cells to alternative implementations, for example providing edited CAR T cells (see Poirot et al., 2015, Multiplex genome edited T-cell manufacturing platform for “off-the-shelf” adoptive T-cell immunotherapies, Cancer Res 75 (18): 3853; Ren et al., 2017, Multiplex genome editing to generate universal CAR T cells resistant to PD1 inhibition, Clin Cancer Res. 2017 May 1; 23(9):2255-2266. doi: 10.1158/1078-0432.CCR-16-1300. Epub 2016 Nov. 4; Qasim et al., 2017, Molecular remission of infant B-ALL after infusion of universal TALEN gene-edited CAR T cells, Sci Transl Med. 2017 Jan. 25; 9(374); Legut, et al., 2018, CRISPR-mediated TCR replacement generates superior anticancer transgenic T cells. Blood, 131(3), 311-322; Georgiadis et al., Long Terminal Repeat CRISPR-CAR-Coupled “Universal” T Cells Mediate Potent Anti-leukemic Effects, Molecular Therapy, In Press, Corrected Proof, Available online 6 Mar. 2018; and Roth, T. L. Editing of Endogenous Genes in Cellular Immunotherapies. Curr Hematol Malig Rep 15, 235-240 (2020)). Cells may be edited using any CRISPR system and method of use thereof as described herein. CRISPR systems may be delivered to an immune cell by any method described herein. In preferred embodiments, cells are edited ex vivo and transferred to a subject in need thereof.


T cells can be obtained from a number of sources, including peripheral blood mononuclear cells (PBMC), bone marrow, lymph node tissue, spleen tissue, and tumors. In certain embodiments of the present invention, T cells can be obtained from a unit of blood collected from a subject using any number of techniques known to the skilled artisan, such as Ficoll separation. In one preferred embodiment, cells from the circulating blood of an individual are obtained by apheresis or leukapheresis. The apheresis product typically contains lymphocytes, including T cells, monocytes, granulocytes, B cells, other nucleated white blood cells, red blood cells, and platelets.


In one embodiment of the invention, the method further comprises expanding the numbers of T cells in the enriched cell population. The numbers of T cells may be increased at least about 3-fold (or 4-, 5-, 6-, 7-, 8-, or 9-fold), more preferably at least about 10-fold (or 20-, 30-, 40-, 50-, 60-, 70-, 80-, or 90-fold), more preferably at least about 100-fold, more preferably at least about 1,000-fold, or most preferably at least about 100,000-fold. The numbers of T cells may be expanded using any suitable method known in the art.


The administration of cells or population of cells, such as immune system cells or cell populations, such as more particularly immunoresponsive cells or cell populations, as disclosed herein may be carried out in any convenient manner, including by aerosol inhalation, injection, ingestion, transfusion, implantation or transplantation. The cells or population of cells may be administered to a patient subcutaneously, intradermally, intratumorally, intranodally, intramedullary, intramuscularly, intrathecally, by intravenous or intralymphatic injection, or intraperitoneally. In some embodiments, the disclosed immune cells may be delivered or administered into a cavity formed by the resection of tumor tissue (i.e., intracavity delivery) or directly into a tumor prior to resection (i.e., intratumoral delivery). In one embodiment, the cell compositions of the present invention are preferably administered by intravenous injection.


The administration of the cells or population of cells can consist of the administration of 104-109 cells per kg body weight, preferably 105 to 106 cells/kg body weight including all integer values of cell numbers within those ranges. The cells or population of cells can be administrated in one or more doses. In another embodiment, the effective amount of cells are administrated as a single dose. In another embodiment, the effective amount of cells are administrated as more than one dose over a period time. Timing of administration is within the judgment of managing physician and depends on the clinical condition of the patient. The cells or population of cells may be obtained from any source, such as a blood bank or a donor. While individual needs vary, determination of optimal ranges of effective amounts of a given cell type for a particular disease or conditions are within the skill of one in the art. An effective amount means an amount which provides a therapeutic or prophylactic benefit. The dosage administrated will be dependent upon the age, health and weight of the recipient, kind of concurrent treatment, if any, frequency of treatment and the nature of the effect desired.


Administration

In certain embodiments, the one or more agents are administered to a subject in a pharmaceutical composition. A “pharmaceutical composition” refers to a composition that usually contains an excipient, such as a pharmaceutically acceptable carrier that is conventional in the art and that is suitable for administration to cells or to a subject.


The pharmaceutical composition according to the present invention can, in one alternative, include a prodrug. When a pharmaceutical composition according to the present invention includes a prodrug, prodrugs and active metabolites of a compound may be identified using routine techniques known in the art. (See, e.g., Bertolini et al., J. Med. Chem., 40, 2011-2016 (1997); Shan et al., J. Pharm. Sci., 86 (7), 765-767; Bagshawe, Drug Dev. Res., 34, 220-230 (1995); Bodor, Advances in Drug Res., 13, 224-331 (1984); Bundgaard, Design of Prodrugs (Elsevier Press 1985); Larsen, Design and Application of Prodrugs, Drug Design and Development (Krogsgaard-Larsen et al., eds., Harwood Academic Publishers, 1991); Dear et al., J. Chromatogr. B, 748, 281-293 (2000); Spraul et al., J. Pharmaceutical & Biomedical Analysis, 10, 601-605 (1992); and Prox et al., Xenobiol., 3, 103-112 (1992)).


The term “pharmaceutically acceptable” as used throughout this specification is consistent with the art and means compatible with the other ingredients of a pharmaceutical composition and not deleterious to the recipient thereof.


As used herein, “carrier” or “excipient” includes any and all solvents, diluents, buffers (such as, e.g., neutral buffered saline or phosphate buffered saline), solubilizers, colloids, dispersion media, vehicles, fillers, chelating agents (such as, e.g., EDTA or glutathione), amino acids (such as, e.g., glycine), proteins, disintegrants, binders, lubricants, wetting agents, emulsifiers, sweeteners, colorants, flavorings, aromatizers, thickeners, agents for achieving a depot effect, coatings, antifungal agents, preservatives, stabilizers, antioxidants, tonicity controlling agents, absorption delaying agents, and the like. The use of such media and agents for pharmaceutical active components is well known in the art. Such materials should be non-toxic and should not interfere with the activity of the cells or active components.


The precise nature of the carrier or excipient or other material will depend on the route of administration. For example, the composition may be in the form of a parenterally acceptable aqueous solution, which is pyrogen-free and has suitable pH, isotonicity and stability. For general principles in medicinal formulation, the reader is referred to Cell Therapy: Stem Cell Transplantation, Gene Therapy, and Cellular Immunotherapy, by G. Morstyn & W. Sheridan eds., Cambridge University Press, 1996; and Hematopoietic Stem Cell Therapy, E. D. Ball, J. Lister & P. Law, Churchill Livingstone, 2000.


The pharmaceutical composition can be applied parenterally, rectally, orally or topically. Preferably, the pharmaceutical composition may be used for intravenous, intramuscular, subcutaneous, peritoneal, peridural, rectal, nasal, pulmonary, mucosal, or oral application. In a preferred embodiment, the pharmaceutical composition according to the invention is intended to be used as an infusion. The skilled person will understand that compositions which are to be administered orally or topically will usually not comprise cells, although it may be envisioned for oral compositions to also comprise cells, for example when gastro-intestinal tract indications are treated. Each of the cells or active components (e.g., immunomodulants) as discussed herein may be administered by the same route or may be administered by a different route. By means of example, and without limitation, cells may be administered parenterally and other active components may be administered orally.


Liquid pharmaceutical compositions may generally include a liquid carrier such as water or a pharmaceutically acceptable aqueous solution. For example, physiological saline solution, tissue or cell culture media, dextrose or other saccharide solution or glycols such as ethylene glycol, propylene glycol or polyethylene glycol may be included.


The composition may include one or more cell protective molecules, cell regenerative molecules, growth factors, anti-apoptotic factors or factors that regulate gene expression in the cells. Such substances may render the cells independent of their environment.


Such pharmaceutical compositions may contain further components ensuring the viability of the cells therein. For example, the compositions may comprise a suitable buffer system (e.g., phosphate or carbonate buffer system) to achieve desirable pH, more usually near neutral pH, and may comprise sufficient salt to ensure isoosmotic conditions for the cells to prevent osmotic stress. For example, suitable solution for these purposes may be phosphate-buffered saline (PBS), sodium chloride solution, Ringer's Injection or Lactated Ringer's Injection, as known in the art. Further, the composition may comprise a carrier protein, e.g., albumin (e.g., bovine or human albumin), which may increase the viability of the cells.


Further suitably pharmaceutically acceptable carriers or additives are well known to those skilled in the art and for instance may be selected from proteins such as collagen or gelatine, carbohydrates such as starch, polysaccharides, sugars (dextrose, glucose and sucrose), cellulose derivatives like sodium or calcium carboxymethylcellulose, hydroxypropyl cellulose or hydroxypropylmethyl cellulose, pregeletanized starches, pectin agar, carrageenan, clays, hydrophilic gums (acacia gum, guar gum, arabic gum and xanthan gum), alginic acid, alginates, hyaluronic acid, polyglycolic and polylactic acid, dextran, pectins, synthetic polymers such as water-soluble acrylic polymer or polyvinylpyrrolidone, proteoglycans, calcium phosphate and the like.


In certain embodiments, a pharmaceutical cell preparation as taught herein may be administered in a form of liquid composition. In embodiments, the cells or pharmaceutical composition comprising such can be administered systemically, topically, within an organ or at a site of organ dysfunction or lesion.


Preferably, the pharmaceutical compositions may comprise a therapeutically effective amount of the specified immune cells and/or other active components (e.g., immunomodulants). The term “therapeutically effective amount” refers to an amount which can elicit a biological or medicinal response in a tissue, system, animal or human that is being sought by a researcher, veterinarian, medical doctor or other clinician, and in particular can prevent or alleviate one or more of the local or systemic symptoms or features of a disease or condition being treated.


It will be appreciated that administration of therapeutic entities in accordance with the invention will be administered with suitable carriers, excipients, and other agents that are incorporated into formulations to provide improved transfer, delivery, tolerance, and the like. A multitude of appropriate formulations can be found in the formulary known to all pharmaceutical chemists: Remington's Pharmaceutical Sciences (15th ed, Mack Publishing Company, Easton, PA (1975)), particularly Chapter 87 by Blaug, Seymour, therein. These formulations include, for example, powders, pastes, ointments, jellies, waxes, oils, lipids, lipid (cationic or anionic) containing vesicles (such as Lipofectin™), DNA conjugates, anhydrous absorption pastes, oil-in-water and water-in-oil emulsions, emulsions carbowax (polyethylene glycols of various molecular weights), semi-solid gels, and semi-solid mixtures containing carbowax. Any of the foregoing mixtures may be appropriate in treatments and therapies in accordance with the present invention, provided that the active ingredient in the formulation is not inactivated by the formulation and the formulation is physiologically compatible and tolerable with the route of administration. See also Baldrick P. “Pharmaceutical excipient development: the need for preclinical guidance.” Regul. Toxicol Pharmacol. 32(2):210-8 (2000), Wang W. “Lyophilization and development of solid protein pharmaceuticals.” Int. J. Pharm. 203(1-2):1-60 (2000), Charman W N “Lipids, lipophilic drugs, and oral drug delivery-some emerging concepts.” J Pharm Sci. 89(8):967-78 (2000), Powell et al. “Compendium of excipients for parenteral formulations” PDA J Pharm Sci Technol. 52:238-311 (1998) and the citations therein for additional information related to formulations, excipients and carriers well known to pharmaceutical chemists.


The medicaments of the invention are prepared in a manner known to those skilled in the art, for example, by means of conventional dissolving, lyophilizing, mixing, granulating or confectioning processes. Methods well known in the art for making formulations are found, for example, in Remington: The Science and Practice of Pharmacy, 20th ed., ed. A. R. Gennaro, 2000, Lippincott Williams & Wilkins, Philadelphia, and Encyclopedia of Pharmaceutical Technology, eds. J. Swarbrick and J. C. Boylan, 1988-1999, Marcel Dekker, New York.


Administration of medicaments of the invention may be by any suitable means that results in a compound concentration that is effective for treating or inhibiting (e.g., by delaying) the development of a disease. The compound is admixed with a suitable carrier substance, e.g., a pharmaceutically acceptable excipient that preserves the therapeutic properties of the compound with which it is administered. One exemplary pharmaceutically acceptable excipient is physiological saline. The suitable carrier substance is generally present in an amount of 1-95% by weight of the total weight of the medicament. The medicament may be provided in a dosage form that is suitable for administration. Thus, the medicament may be in form of, e.g., tablets, capsules, pills, powders, granulates, suspensions, emulsions, solutions, gels including hydrogels, pastes, ointments, creams, plasters, drenches, delivery devices, injectables, implants, sprays, or aerosols.


Administration can be systemic or local. In addition, it may be advantageous to administer the composition into the central nervous system by any suitable route, including intraventricular and intrathecal injection. Pulmonary administration may also be employed by use of an inhaler or nebulizer, and formulation with an aerosolizing agent. It may also be desirable to administer the agent locally to the area in need of treatment; this may be achieved by, for example, and not by way of limitation, local infusion during surgery, topical application, by injection, by means of a catheter, by means of a suppository, or by means of an implant.


Various delivery systems are known and can be used to administer the pharmacological compositions including, but not limited to, encapsulation in liposomes, microparticles, microcapsules; minicells; polymers; capsules; tablets; and the like. In one embodiment, the agent may be delivered in a vesicle, in particular a liposome. In a liposome, the agent is combined, in addition to other pharmaceutically acceptable carriers, with amphipathic agents such as lipids which exist in aggregated form as micelles, insoluble monolayers, liquid crystals, or lamellar layers in aqueous solution. Suitable lipids for liposomal formulation include, without limitation, monoglycerides, diglycerides, sulfatides, lysolecithin, phospholipids, saponin, bile acids, and the like. Preparation of such liposomal formulations is within the level of skill in the art, as disclosed, for example, in U.S. Pat. Nos. 4,837,028 and 4,737,323. In yet another embodiment, the pharmacological compositions can be delivered in a controlled release system including, but not limited to: a delivery pump (See, for example, Saudek, et al., New Engl. J. Med. 321: 574 (1989) and a semi-permeable polymeric material (See, for example, Howard, et al., J. Neurosurg. 71: 105 (1989)). Additionally, the controlled release system can be placed in proximity of the therapeutic target (e.g., a tumor), thus requiring only a fraction of the systemic dose. See, for example, Goodson, In: Medical Applications of Controlled Release, 1984. (CRC Press, Boca Raton, Fla.).


The amount of the agents which will be effective in the treatment of a particular disorder or condition will depend on the nature of the disorder or condition, and may be determined by standard clinical techniques by those of skill within the art. In addition, in vitro assays may optionally be employed to help identify optimal dosage ranges. The precise dose to be employed in the formulation will also depend on the route of administration, and the overall seriousness of the disease or disorder, and should be decided according to the judgment of the practitioner and each patient's circumstances. Ultimately, the attending physician will decide the amount of the agent with which to treat each individual patient. In certain embodiments, the attending physician will administer low doses of the agent and observe the patient's response. Larger doses of the agent may be administered until the optimal therapeutic effect is obtained for the patient, and at that point the dosage is not increased further. Effective doses may be extrapolated from dose-response curves derived from in vitro or animal model test systems. Ultimately the attending physician will decide on the appropriate duration of therapy using compositions of the present invention. Dosage will also vary according to the age, weight and response of the individual patient.


There are a variety of techniques available for introducing nucleic acids into viable cells. The techniques vary depending upon whether the nucleic acid is transferred into cultured cells in vitro, or in vivo in the cells of the intended host. Techniques suitable for the transfer of nucleic acid into mammalian cells in vitro include the use of liposomes, electroporation, microinjection, cell fusion, DEAE-dextran, the calcium phosphate precipitation method, etc. The currently preferred in vivo gene transfer techniques include transfection with viral (typically retroviral) vectors and viral coat protein-liposome mediated transfection.


Diagnostic Methods

In certain embodiments, detecting pathogenic Th1 cells or a pathogenic Th1 cell immune response can be used to detect Th1 mediated autoimmune diseases. In certain embodiments, detecting pathogenic Th1 cells or a pathogenic Th1 cell immune response can be used to determine whether a treatment is effective in a subject suffering from a disease. In certain embodiments, the disease is an autoimmune and the treatment is any treatment described herein or currently used for treatment. In certain embodiments, a treatment is effective in a subject suffering from an autoimmune disease if the treatment decreases pathogenic Th1 cells or a pathogenic signature described herein. In certain embodiments, the treatment is any treatment as described herein (e.g., a CD160, GPR18 inhibitors). In certain embodiments, the treatment is an IL-23 antagonist. In certain embodiments, the treatment is an IL-12 and IL-23 antagonist. Non-limiting IL-23 antagonists that are approved for use and whose effectiveness can be monitored include the monoclonal antibodies ustekinumab, guselkumab, risankizumab, and tildrakizumab. Ustekinumab targets IL-23 and IL-12 through their shared p40 subunit (see, e.g., Cingoz O. Ustekinumab. MAbs. 2009; 1(3):216-221. doi:10.4161/mabs.1.3.8593). Guselkumab, risankizumab, and tildrakizumab are selective IL-23 inhibitors, which are inhibitors of p19 of IL-23 (see, e.g., Gottlieb A B, Saure D, Wilhelm S, et al. Indirect comparisons of ixekizumab versus three interleukin-23 p19 inhibitors in patients with moderate-to-severe plaque psoriasis—efficacy findings up to week 12. J Dermatolog Treat. 2020; 1-8).


In certain embodiments, an autoimmune response can be detected by detecting pathogenic Th1 cells or non-pathogenic Th1 cells. In certain embodiments, pathogenic Th1 cells can be detected by detecting Th1 cells that express one or markers described herein. For example, Th1 cells that express IL-23R or one or more of IL23R, CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW or a gene program selected from cluster 2 or cluster 9. In certain embodiments, pathogenic Th1 cells are increased. In certain embodiments, non-pathogenic Th1 cells can be detected by detecting Th1 cells expressing a program characterized by cluster 7 genes. In certain embodiments, non-pathogenic Th1 cells are decreased.


The invention provides biomarkers (e.g., phenotype specific or cell type) for the identification, diagnosis, prognosis and manipulation of cell properties, for use in a variety of diagnostic and/or therapeutic indications. Biomarkers in the context of the present invention encompasses, without limitation nucleic acids, proteins, reaction products, and metabolites, together with their polymorphisms, mutations, variants, modifications, subunits, fragments, and other analytes or sample-derived measures. In certain embodiments, biomarkers include the signature genes or signature gene products, and/or cells as described herein.


Biomarkers are useful in methods of diagnosing, prognosing and/or staging an immune response in a subject by detecting a first level of expression, activity and/or function of one or more biomarker and comparing the detected level to a control of level wherein a difference in the detected level and the control level indicates that the presence of an immune response in the subject.


The terms “diagnosis” and “monitoring” are commonplace and well-understood in medical practice. By means of further explanation and without limitation the term “diagnosis” generally refers to the process or act of recognising, deciding on or concluding on a disease or condition in a subject on the basis of symptoms and signs and/or from results of various diagnostic procedures (such as, for example, from knowing the presence, absence and/or quantity of one or more biomarkers characteristic of the diagnosed disease or condition).


The terms “prognosing” or “prognosis” generally refer to an anticipation on the progression of a disease or condition and the prospect (e.g., the probability, duration, and/or extent) of recovery. A good prognosis of the diseases or conditions taught herein may generally encompass anticipation of a satisfactory partial or complete recovery from the diseases or conditions, preferably within an acceptable time period. A good prognosis of such may more commonly encompass anticipation of not further worsening or aggravating of such, preferably within a given time period. A poor prognosis of the diseases or conditions as taught herein may generally encompass anticipation of a substandard recovery and/or unsatisfactorily slow recovery, or to substantially no recovery or even further worsening of such.


The biomarkers of the present invention are useful in methods of identifying patient populations at risk or suffering from an immune response based on a detected level of expression, activity and/or function of one or more biomarkers. These biomarkers are also useful in monitoring subjects undergoing treatments and therapies for suitable or aberrant response(s) to determine efficaciousness of the treatment or therapy and for selecting or modifying therapies and treatments that would be efficacious in treating, delaying the progression of or otherwise ameliorating a symptom. The biomarkers provided herein are useful for selecting a group of patients at a specific state of a disease with accuracy that facilitates selection of treatments.


The term “monitoring” generally refers to the follow-up of a disease or a condition in a subject for any changes which may occur over time.


The terms also encompass prediction of a disease. The terms “predicting” or “prediction” generally refer to an advance declaration, indication or foretelling of a disease or condition in a subject not (yet) having said disease or condition. For example, a prediction of a disease or condition in a subject may indicate a probability, chance or risk that the subject will develop said disease or condition, for example within a certain time period or by a certain age. Said probability, chance or risk may be indicated inter alia as an absolute value, range or statistics, or may be indicated relative to a suitable control subject or subject population (such as, e.g., relative to a general, normal or healthy subject or subject population). Hence, the probability, chance or risk that a subject will develop a disease or condition may be advantageously indicated as increased or decreased, or as fold-increased or fold-decreased relative to a suitable control subject or subject population. As used herein, the term “prediction” of the conditions or diseases as taught herein in a subject may also particularly mean that the subject has a ‘positive’ prediction of such, i.e., that the subject is at risk of having such (e.g., the risk is significantly increased vis-à-vis a control subject or subject population). The term “prediction of no” diseases or conditions as taught herein as described herein in a subject may particularly mean that the subject has a ‘negative’ prediction of such, i.e., that the subject's risk of having such is not significantly increased vis-à-vis a control subject or subject population.


Suitably, an altered quantity or phenotype of the immune cells in the subject compared to a control subject having normal immune status or not having a disease comprising an immune component indicates that the subject has an impaired immune status or has a disease comprising an immune component or would benefit from an immune therapy.


Hence, the methods may rely on comparing the quantity of immune cell populations, biomarkers, or gene or gene product signatures measured in samples from patients with reference values, wherein said reference values represent known predictions, diagnoses and/or prognoses of diseases or conditions as taught herein.


For example, distinct reference values may represent the prediction of a risk (e.g., an abnormally elevated risk) of having a given disease or condition as taught herein vs. the prediction of no or normal risk of having said disease or condition. In another example, distinct reference values may represent predictions of differing degrees of risk of having such disease or condition.


In a further example, distinct reference values can represent the diagnosis of a given disease or condition as taught herein vs. the diagnosis of no such disease or condition (such as, e.g., the diagnosis of healthy, or recovered from said disease or condition, etc.). In another example, distinct reference values may represent the diagnosis of such disease or condition of varying severity.


In yet another example, distinct reference values may represent a good prognosis for a given disease or condition as taught herein vs. a poor prognosis for said disease or condition. In a further example, distinct reference values may represent varyingly favourable or unfavourable prognoses for such disease or condition.


Such comparison may generally include any means to determine the presence or absence of at least one difference and optionally of the size of such difference between values being compared. A comparison may include a visual inspection, an arithmetical or statistical comparison of measurements. Such statistical comparisons include, but are not limited to, applying a rule.


Reference values may be established according to known procedures previously employed for other cell populations, biomarkers and gene or gene product signatures. For example, a reference value may be established in an individual or a population of individuals characterised by a particular diagnosis, prediction and/or prognosis of said disease or condition (i.e., for whom said diagnosis, prediction and/or prognosis of the disease or condition holds true). Such population may comprise without limitation 2 or more, 10 or more, 100 or more, or even several hundred or more individuals.


A “deviation” of a first value from a second value may generally encompass any direction (e.g., increase: first value>second value; or decrease: first value<second value) and any extent of alteration.


For example, a deviation may encompass a decrease in a first value by, without limitation, at least about 10% (about 0.9-fold or less), or by at least about 20% (about 0.8-fold or less), or by at least about 30% (about 0.7-fold or less), or by at least about 40% (about 0.6-fold or less), or by at least about 50% (about 0.5-fold or less), or by at least about 60% (about 0.4-fold or less), or by at least about 70% (about 0.3-fold or less), or by at least about 80% (about 0.2-fold or less), or by at least about 90% (about 0.1-fold or less), relative to a second value with which a comparison is being made.


For example, a deviation may encompass an increase of a first value by, without limitation, at least about 10% (about 1.1-fold or more), or by at least about 20% (about 1.2-fold or more), or by at least about 30% (about 1.3-fold or more), or by at least about 40% (about 1.4-fold or more), or by at least about 50% (about 1.5-fold or more), or by at least about 60% (about 1.6-fold or more), or by at least about 70% (about 1.7-fold or more), or by at least about 80% (about 1.8-fold or more), or by at least about 90% (about 1.9-fold or more), or by at least about 100% (about 2-fold or more), or by at least about 150% (about 2.5-fold or more), or by at least about 200% (about 3-fold or more), or by at least about 500% (about 6-fold or more), or by at least about 700% (about 8-fold or more), or like, relative to a second value with which a comparison is being made.


Preferably, a deviation may refer to a statistically significant observed alteration. For example, a deviation may refer to an observed alteration which falls outside of error margins of reference values in a given population (as expressed, for example, by standard deviation or standard error, or by a predetermined multiple thereof, e.g., ±1×SD or ±2×SD or ±3×SD, or 1×SE or ±2×SE or ±3×SE). Deviation may also refer to a value falling outside of a reference range defined by values in a given population (for example, outside of a range which comprises ≥40%, ≥50%, ≥60%, ≥70%, ≥75% or ≥80% or ≥85% or ≥90% or ≥95% or even ≥100% of values in said population).


In a further embodiment, a deviation may be concluded if an observed alteration is beyond a given threshold or cut-off. Such threshold or cut-off may be selected as generally known in the art to provide for a chosen sensitivity and/or specificity of the prediction methods, e.g., sensitivity and/or specificity of at least 50%, or at least 60%, or at least 70%, or at least 80%, or at least 85%, or at least 90%, or at least 95%.


For example, receiver-operating characteristic (ROC) curve analysis can be used to select an optimal cut-off value of the quantity of a given immune cell population, biomarker or gene or gene product signatures, for clinical use of the present diagnostic tests, based on acceptable sensitivity and specificity, or related performance measures which are well-knownper se, such as positive predictive value (PPV), negative predictive value (NPV), positive likelihood ratio (LR+), negative likelihood ratio (LR−), Youden index, or similar.


In one embodiment, the signature genes, biomarkers, and/or cells may be detected or isolated by immunofluorescence, immunohistochemistry (IHC), fluorescence activated cell sorting (FACS), mass spectrometry (MS), mass cytometry (CyTOF), RNA-seq, single cell RNA-seq (described further herein), quantitative RT-PCR, single cell qPCR, FISH, RNA-FISH, MERFISH (multiplex (in situ) RNA FISH) and/or by in situ hybridization. Other methods including absorbance assays and colorimetric assays are known in the art and may be used herein. detection may comprise primers and/or probes or fluorescently bar-coded oligonucleotide probes for hybridization to RNA (see e.g., Geiss G K, et al., Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol. 2008 March; 26(3):317-25).


In certain embodiments, a tissue sample may be obtained and analyzed for specific cell markers (IHC) or specific transcripts (e.g., RNA-FISH). Tissue samples for diagnosis, prognosis or detecting may be obtained by endoscopy. In one embodiment, a sample may be obtained by endoscopy and analyzed by FACS. As used herein, “endoscopy” refers to a procedure that uses an endoscope to examine the interior of a hollow organ or cavity of the body. The endoscope may include a camera and a light source. The endoscope may include tools for dissection or for obtaining a biological sample.


The present invention also may comprise a kit with a detection reagent that binds to one or more biomarkers or can be used to detect one or more biomarkers.


MS methods


Biomarker detection may also be evaluated using mass spectrometry methods. A variety of configurations of mass spectrometers can be used to detect biomarker values. Several types of mass spectrometers are available or can be produced with various configurations. In general, a mass spectrometer has the following major components: a sample inlet, an ion source, a mass analyzer, a detector, a vacuum system, and instrument-control system, and a data system. Difference in the sample inlet, ion source, and mass analyzer generally define the type of instrument and its capabilities. For example, an inlet can be a capillary-column liquid chromatography source or can be a direct probe or stage such as used in matrix-assisted laser desorption. Common ion sources are, for example, electrospray, including nanospray and microspray or matrix-assisted laser desorption. Common mass analyzers include a quadrupole mass filter, ion trap mass analyzer and time-of-flight mass analyzer. Additional mass spectrometry methods are well known in the art (see Burlingame et al., Anal. Chem. 70:647 R-716R (1998); Kinter and Sherman, New York (2000)).


Protein biomarkers and biomarker values can be detected and measured by any of the following: electrospray ionization mass spectrometry (ESI-MS), ESI-MS/MS, ESI-MS/(MS)n, matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF-MS), surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (SELDI-TOF-MS), desorption/ionization on silicon (DIOS), secondary ion mass spectrometry (SIMS), quadrupole time-of-flight (Q-TOF), tandem time-of-flight (TOF/TOF) technology, called ultraflex III TOF/TOF, atmospheric pressure chemical ionization mass spectrometry (APCI-MS), APCI-MS/MS, APCI-(MS).sup.N, atmospheric pressure photoionization mass spectrometry (APPI-MS), APPI-MS/MS, and APPI-(MS).sup.N, quadrupole mass spectrometry, Fourier transform mass spectrometry (FTMS), quantitative mass spectrometry, and ion trap mass spectrometry.


Sample preparation strategies are used to label and enrich samples before mass spectroscopic characterization of protein biomarkers and determination biomarker values. Labeling methods include but are not limited to isobaric tag for relative and absolute quantitation (iTRAQ) and stable isotope labeling with amino acids in cell culture (SILAC). Capture reagents used to selectively enrich samples for candidate biomarker proteins prior to mass spectroscopic analysis include but are not limited to aptamers, antibodies, nucleic acid probes, chimeras, small molecules, an F(ab′)2 fragment, a single chain antibody fragment, an Fv fragment, a single chain Fv fragment, a nucleic acid, a lectin, a ligand-binding receptor, affybodies, nanobodies, ankyrins, domain antibodies, alternative antibody scaffolds (e.g. diabodies etc) imprinted polymers, avimers, peptidomimetics, peptoids, peptide nucleic acids, threose nucleic acid, a hormone receptor, a cytokine receptor, and synthetic receptors, and modifications and fragments of these.


Immunoassays

Immunoassay methods are based on the reaction of an antibody to its corresponding target or analyte and can detect the analyte in a sample depending on the specific assay format. To improve specificity and sensitivity of an assay method based on immunoreactivity, monoclonal antibodies are often used because of their specific epitope recognition. Polyclonal antibodies have also been successfully used in various immunoassays because of their increased affinity for the target as compared to monoclonal antibodies Immunoassays have been designed for use with a wide range of biological sample matrices Immunoassay formats have been designed to provide qualitative, semi-quantitative, and quantitative results.


Quantitative results may be generated through the use of a standard curve created with known concentrations of the specific analyte to be detected. The response or signal from an unknown sample is plotted onto the standard curve, and a quantity or value corresponding to the target in the unknown sample is established.


Numerous immunoassay formats have been designed. ELISA or EIA can be quantitative for the detection of an analyte/biomarker. This method relies on attachment of a label to either the analyte or the antibody and the label component includes, either directly or indirectly, an enzyme. ELISA tests may be formatted for direct, indirect, competitive, or sandwich detection of the analyte. Other methods rely on labels such as, for example, radioisotopes (I125) or fluorescence. Additional techniques include, for example, agglutination, nephelometry, turbidimetry, Western blot, immunoprecipitation, immunocytochemistry, immunohistochemistry, flow cytometry, Luminex assay, and others (see ImmunoAssay: A Practical Guide, edited by Brian Law, published by Taylor & Francis, Ltd., 2005 edition).


Exemplary assay formats include enzyme-linked immunosorbent assay (ELISA), radioimmunoassay, fluorescent, chemiluminescence, and fluorescence resonance energy transfer (FRET) or time resolved-FRET (TR-FRET) immunoassays. Examples of procedures for detecting biomarkers include biomarker immunoprecipitation followed by quantitative methods that allow size and peptide level discrimination, such as gel electrophoresis, capillary electrophoresis, planar electrochromatography, and the like.


Methods of detecting and/or quantifying a detectable label or signal generating material depend on the nature of the label. The products of reactions catalyzed by appropriate enzymes (where the detectable label is an enzyme; see above) can be, without limitation, fluorescent, luminescent, or radioactive or they may absorb visible or ultraviolet light. Examples of detectors suitable for detecting such detectable labels include, without limitation, x-ray film, radioactivity counters, scintillation counters, spectrophotometers, colorimeters, fluorometers, luminometers, and densitometers.


Any of the methods for detection can be performed in any format that allows for any suitable preparation, processing, and analysis of the reactions. This can be, for example, in multi-well assay plates (e.g., 96 wells or 384 wells) or using any suitable array or microarray. Stock solutions for various agents can be made manually or robotically, and all subsequent pipetting, diluting, mixing, distribution, washing, incubating, sample readout, data collection and analysis can be done robotically using commercially available analysis software, robotics, and detection instrumentation capable of detecting a detectable label.


Hybridization Assays

Such applications are hybridization assays in which a nucleic acid that displays “probe” nucleic acids for each of the genes to be assayed/profiled in the profile to be generated is employed. In these assays, a sample of target nucleic acids is first prepared from the initial nucleic acid sample being assayed, where preparation may include labeling of the target nucleic acids with a label, e.g., a member of a signal producing system. Following target nucleic acid sample preparation, the sample is contacted with the array under hybridization conditions, whereby complexes are formed between target nucleic acids that are complementary to probe sequences attached to the array surface. The presence of hybridized complexes is then detected, either qualitatively or quantitatively. Specific hybridization technology which may be practiced to generate the expression profiles employed in the subject methods includes the technology described in U.S. Pat. Nos. 5,143,854; 5,288,644; 5,324,633; 5,432,049; 5,470,710; 5,492,806; 5,503,980; 5,510,270; 5,525,464; 5,547,839; 5,580,732; 5,661,028; 5,800,992; the disclosures of which are herein incorporated by reference; as well as WO 95/21265; WO 96/31622; WO 97/10365; WO 97/27317; EP 373 203; and EP 785 280. In these methods, an array of “probe” nucleic acids that includes a probe for each of the biomarkers whose expression is being assayed is contacted with target nucleic acids as described above. Contact is carried out under hybridization conditions, e.g., stringent hybridization conditions as described above, and unbound nucleic acid is then removed. The resultant pattern of hybridized nucleic acids provides information regarding expression for each of the biomarkers that have been probed, where the expression information is in terms of whether or not the gene is expressed and, typically, at what level, where the expression data, i.e., expression profile, may be both qualitative and quantitative.


Optimal hybridization conditions will depend on the length (e.g., oligomer vs. polynucleotide greater than 200 bases) and type (e.g., RNA, DNA, PNA) of labeled probe and immobilized polynucleotide or oligonucleotide. General parameters for specific (i.e., stringent) hybridization conditions for nucleic acids are described in Sambrook et al., supra, and in Ausubel et al., “Current Protocols in Molecular Biology”, Greene Publishing and Wiley-interscience, NY (1987), which is incorporated in its entirety for all purposes. When the cDNA microarrays are used, typical hybridization conditions are hybridization in 5×SSC plus 0.2% SDS at 65 C for 4 hours followed by washes at 25° C. in low stringency wash buffer (1×SSC plus 0.2% SDS) followed by 10 minutes at 25° C. in high stringency wash buffer (0.1SSC plus 0.2% SDS) (see Shena et al., Proc. Natl. Acad. Sci. USA, Vol. 93, p. 10614 (1996)). Useful hybridization conditions are also provided in, e.g., Tijessen, Hybridization With Nucleic Acid Probes”, Elsevier Science Publishers B.V. (1993) and Kricka, “Nonisotopic DNA Probe Techniques”, Academic Press, San Diego, Calif. (1992).


Single Cell Sequencing

In certain embodiments, the invention involves single cell RNA sequencing (see, e.g., Kalisky, T., Blainey, P. & Quake, S. R. Genomic Analysis at the Single-Cell Level. Annual review of genetics 45, 431-445, (2011); Kalisky, T. & Quake, S. R. Single-cell genomics. Nature Methods 8, 311-314 (2011); Islam, S. et al. Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq. Genome Research, (2011); Tang, F. et al. RNA-Seq analysis to capture the transcriptome landscape of a single cell. Nature Protocols 5, 516-535, (2010); Tang, F. et al. mRNA-Seq whole-transcriptome analysis of a single cell. Nature Methods 6, 377-382, (2009); Ramskold, D. et al. Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells. Nature Biotechnology 30, 777-782, (2012); and Hashimshony, T., Wagner, F., Sher, N. & Yanai, I. CEL-Seq: Single-Cell RNA-Seq by Multiplexed Linear Amplification. Cell Reports, Cell Reports, Volume 2, Issue 3, p 666-673, 2012).


In certain embodiments, the invention involves plate based single cell RNA sequencing (see, e.g., Picelli, S. et al., 2014, “Full-length RNA-seq from single cells using Smart-seq2” Nature protocols 9, 171-181, doi:10.1038/nprot.2014.006).


In certain embodiments, the invention involves high-throughput single-cell RNA-seq. In this regard reference is made to Macosko et al., 2015, “Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets” Cell 161, 1202-1214; International patent application number PCT/US2015/049178, published as WO2016/040476 on Mar. 17, 2016; Klein et al., 2015, “Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells” Cell 161, 1187-1201; International patent application number PCT/US2016/027734, published as WO2016168584A1 on Oct. 20, 2016; Zheng, et al., 2016, “Haplotyping germline and cancer genomes with high-throughput linked-read sequencing” Nature Biotechnology 34, 303-311; Zheng, et al., 2017, “Massively parallel digital transcriptional profiling of single cells” Nat. Commun. 8, 14049 doi: 10.1038/ncomms14049; International patent publication number WO2014210353A2; Zilionis, et al., 2017, “Single-cell barcoding and sequencing using droplet microfluidics” Nat Protoc. Jan; 12(1):44-73; Cao et al., 2017, “Comprehensive single cell transcriptional profiling of a multicellular organism by combinatorial indexing” bioRxiv preprint first posted online Feb. 2, 2017, doi: dx.doi.org/10.1101/104844; Rosenberg et al., 2017, “Scaling single cell transcriptomics through split pool barcoding” bioRxiv preprint first posted online Feb. 2, 2017, doi: dx.doi.org/10.1101/105163; Rosenberg et al., “Single-cell profiling of the developing mouse brain and spinal cord with split-pool barcoding” Science 15 Mar. 2018; Vitak, et al., “Sequencing thousands of single-cell genomes with combinatorial indexing” Nature Methods, 14(3):302-308, 2017; Cao, et al., Comprehensive single-cell transcriptional profiling of a multicellular organism. Science, 357(6352):661-667, 2017; Gierahn et al., “Seq-Well: portable, low-cost RNA sequencing of single cells at high throughput” Nature Methods 14, 395-398 (2017); and Hughes, et al., “Highly Efficient, Massively-Parallel Single-Cell RNA-Seq Reveals Cellular States and Molecular Features of Human Skin Pathology” bioRxiv 689273; doi: doi.org/10.1101/689273, all the contents and disclosure of each of which are herein incorporated by reference in their entirety.


In certain embodiments, the invention involves single nucleus RNA sequencing. In this regard reference is made to Swiech et al., 2014, “In vivo interrogation of gene function in the mammalian brain using CRISPR-Cas9” Nature Biotechnology Vol. 33, pp. 102-106; Habib et al., 2016, “Div-Seq: Single-nucleus RNA-Seq reveals dynamics of rare adult newborn neurons” Science, Vol. 353, Issue 6302, pp. 925-928; Habib et al., 2017, “Massively parallel single-nucleus RNA-seq with DroNc-seq” Nat Methods. 2017 October; 14(10):955-958; International Patent Application No. PCT/US2016/059239, published as WO2017164936 on Sep. 28, 2017; International Patent Application No. PCT/US2018/060860, published as WO/2019/094984 on May 16, 2019; International Patent Application No. PCT/US2019/055894, published as WO/2020/077236 on Apr. 16, 2020; and Drokhlyansky, et al., “The enteric nervous system of the human and mouse colon at a single-cell resolution,” bioRxiv 746743; doi: doi.org/10.1101/746743, which are herein incorporated by reference in their entirety.


Screening

A further aspect of the invention relates to a method for identifying an agent capable of modulating one or more phenotypic aspects of a pathogenic Th1 cell or cell population comprising Th1 cells. The Th1 cell or population comprising Th1 cells can be Th1 cells differentiated in vitro as described herein. In certain embodiments, the method comprises a) applying a candidate agent to the cell or cell population; b) detecting modulation of one or more phenotypic aspects of the cell or cell population by the candidate agent (e.g., expression of one or more genes or program selected from cluster 2, 9 or 7 in Table 3), thereby identifying the agent. The phenotypic aspects of the cell or cell population that is modulated may be one or more genes or biological program specific to a Th1 cell phenotype (e.g., an inflammatory phenotype or suppressive immune phenotype). In certain embodiments, steps can include administering candidate modulating agents to cells, detecting identified cell (sub)populations for changes in signatures, or identifying relative changes in cell (sub) populations which may comprise detecting relative abundance of particular gene signatures.


The term “modulate” broadly denotes a qualitative and/or quantitative alteration, change or variation in that which is being modulated. Where modulation can be assessed quantitatively—for example, where modulation comprises or consists of a change in a quantifiable variable such as a quantifiable property of a cell or where a quantifiable variable provides a suitable surrogate for the modulation—modulation specifically encompasses both increase (e.g., activation) or decrease (e.g., inhibition) in the measured variable. The term encompasses any extent of such modulation, e.g., any extent of such increase or decrease, and may more particularly refer to statistically significant increase or decrease in the measured variable. By means of example, modulation may encompass an increase in the value of the measured variable by at least about 10%, e.g., by at least about 20%, preferably by at least about 30%, e.g., by at least about 40%, more preferably by at least about 50%, e.g., by at least about 75%, even more preferably by at least about 100%, e.g., by at least about 150%, 200%, 250%, 300%, 400% or by at least about 500%, compared to a reference situation without said modulation; or modulation may encompass a decrease or reduction in the value of the measured variable by at least about 10%, e.g., by at least about 20%, by at least about 30%, e.g., by at least about 40%, by at least about 50%, e.g., by at least about 60%, by at least about 70%, e.g., by at least about 80%, by at least about 90%, e.g., by at least about 95%, such as by at least about 96%, 97%, 98%, 99% or even by 100%, compared to a reference situation without said modulation. Preferably, modulation may be specific or selective, hence, one or more desired phenotypic aspects of an immune cell or immune cell population may be modulated without substantially altering other (unintended, undesired) phenotypic aspect(s).


The term “agent” broadly encompasses any condition, substance or agent capable of modulating one or more phenotypic aspects of a cell or cell population as disclosed herein. Such conditions, substances or agents may be of physical, chemical, biochemical and/or biological nature. The term “candidate agent” refers to any condition, substance or agent that is being examined for the ability to modulate one or more phenotypic aspects of a cell or cell population as disclosed herein in a method comprising applying the candidate agent to the cell or cell population (e.g., exposing the cell or cell population to the candidate agent or contacting the cell or cell population with the candidate agent) and observing whether the desired modulation takes place.


Agents may include any potential class of biologically active conditions, substances or agents, such as for instance antibodies, proteins, peptides, nucleic acids, oligonucleotides, small molecules, or combinations thereof, as described herein.


The methods of phenotypic analysis can be utilized for evaluating environmental stress and/or state, for screening of chemical libraries, and to screen or identify structural, syntenic, genomic, and/or organism and species variations. For example, a culture of cells, can be exposed to an environmental stress, such as but not limited to heat shock, osmolarity, hypoxia, cold, oxidative stress, radiation, starvation, a chemical (for example a therapeutic agent or potential therapeutic agent) and the like. After the stress is applied, a representative sample can be subjected to analysis, for example at various time points, and compared to a control, such as a sample from an organism or cell, for example a cell from an organism, or a standard value. By exposing cells, or fractions thereof, tissues, or even whole animals, to different members of the chemical libraries, and performing the methods described herein, different members of a chemical library can be screened for their effect on immune phenotypes thereof simultaneously in a relatively short amount of time, for example using a high throughput method.


In some embodiments, screening of test agents involves testing a combinatorial library containing a large number of potential modulator compounds. A combinatorial chemical library may be a collection of diverse chemical compounds generated by either chemical synthesis or biological synthesis, by combining a number of chemical “building blocks” such as reagents. For example, a linear combinatorial chemical library, such as a polypeptide library, is formed by combining a set of chemical building blocks (amino acids) in every possible way for a given compound length (for example the number of amino acids in a polypeptide compound). Millions of chemical compounds can be synthesized through such combinatorial mixing of chemical building blocks.


In certain embodiments, the present invention provides for gene signature screening. The concept of signature screening was introduced by Stegmaier et al. (Gene expression-based high-throughput screening (GE-HTS) and application to leukemia differentiation. Nature Genet. 36, 257-263 (2004)), who realized that if a gene-expression signature was the proxy for a phenotype of interest, it could be used to find small molecules that effect that phenotype without knowledge of a validated drug target. The signatures or biological programs of the present invention may be used to screen for drugs that reduce the signature or biological program in cells as described herein. The signature or biological program may be used for GE-HTS. In certain embodiments, pharmacological screens may be used to identify drugs that are selectively toxic to cells having a signature.


The Connectivity Map (cmap) is a collection of genome-wide transcriptional expression data from cultured human cells treated with bioactive small molecules and simple pattern-matching algorithms that together enable the discovery of functional connections between drugs, genes and diseases through the transitory feature of common gene-expression changes (see, Lamb et al., The Connectivity Map: Using Gene-Expression Signatures to Connect Small Molecules, Genes, and Disease. Science 29 Sep. 2006: Vol. 313, Issue 5795, pp. 1929-1935, DOI: 10.1126/science.1132939; and Lamb, J., The Connectivity Map: a new tool for biomedical research. Nature Reviews Cancer January 2007: Vol. 7, pp. 54-60). In certain embodiments, Cmap can be used to screen for small molecules capable of modulating a signature or biological program of the present invention in silico.


Further embodiments are illustrated in the following Examples which are given for illustrative purposes only and are not intended to limit the scope of the invention.


EXAMPLES
Example 1—In Vitro Differentiation of Naïve T Cells with IL-12 and IL-21 Induces IL-23R+ Th1 Cells

Although it has been shown in vivo that IFN-γ+ T cells can express IL-23R, these IFN-γ-producing cells were identified as transdifferentiated Th17 cells using a fate-mapping approach19. In fact, chronic stimulation of Th17 cells with IL-23 was shown to increase IFN-γ production from Th17 cells and to inhibit IL-17 production19. However, whether there are bona fide Th1 cells that express IL-23R and thus may be impacted by IL-23 signaling has not been addressed. It has been long established that naïve T cells differentiated in vitro with IL-12 to become Th1 cells express IL-12R but are not known to express IL-23R20. Therefore, Applicants sought to identify whether there are bonafide Th1 cells that express IL-23R and undertook a screen to identify a cytokine that in conjunction with IL-12 would efficiently induce IL-23R in Th1 cells in vitro. Th1 cells express IFN-γ, IL-2, lymphotoxin (LT) and the master transcription factor T-bet but do not produce IL-17A, the signature cytokine of Th17 cells20,21. Screening different cytokine conditions (FIG. 5), Applicants discovered that culturing naïve CD4+ T cells with IL-12+IL-21 for 5 days induces strong expression of IL-23R, together with IFN-γ expression, the signature cytokine of Th1 cells (FIG. 1a and FIG. 5). The expression of IL-23R in Th1 cells reached similar levels as in pathogenic Th17 cells that were differentiated with the cytokine combination IL-1β+IL-6+IL-23 (FIG. 1a)8. When Applicants further added IL-23 to the differentiation condition (IL-12+IL-21+IL-23), it slightly increased the expression of Il23r compared to IL-12+IL-21, and it is known that IL-23 can increase the expression of its own receptor (FIG. 1a and FIG. 5). Differentiation of naïve T cells with IL-12 or IL-18 alone induced minimal expression of IL-23R (FIG. 5). Addition of IL-23 together with IL-12 did also induce Il23r expression, however, the induction of IL-23R and IFN-γ expression was more pronounced with IL-12+IL-21. Applicants also measured the expression of Il23r, Ifng, III7a, Tbx21, Rorc and Stat3 in these in vitro differentiated T cells and could confirm the induction of Il23r together with a Th1 cell transcriptional program (FIG. 1b). In summary, Applicants demonstrate that IL-12+IL-21 strongly induces IL-23R expression in Th1 cells in vitro.


Example 2—Single-Cell RNA-Sequencing Identifies Genes in Th1 Cells that are Expressed in an IL-23R Dependent Manner

It is known that IL-23R signaling induces a set of genes in Th17 cells that makes them pathogenic, therefore, Applicants studied the impact of IL-23R signaling on Th1 cells. Applicants took advantage of a previously described reporter allele for Il23r expression and chose a two-pronged approach: (1) Applicants differentiated naïve T cells from reporter mice that carry an eGFP reporter in their endogenous IL-23R locus (Il23reGFP/wt) with IL-12+IL-21+IL-23 for 96 hours. Applicants then isolated IL-23R+ (i.e., eGFP+) and IL-23R (i.e., eGFP) cells and conducted scRNAseq of the two populations using Smart-seq2 protocol22,23. Notably, Applicants added IL-23 to the cytokine combination in this experiment in order to enhance signaling through IL-23R and thus better identify its role in Th1 cells. (2) Secondly, Applicants differentiated naïve T cells from IL-23R-deficient mice (Il23reGFP/eGFP) with the same set of cytokines and sorted eGFP+ vs. eGFP cells for the expression analysis by scRNAseq (FIG. 1c).


Applicants analyzed the expression of signature Th1 and Th17 cell genes in these in vitro differentiated cells and confirmed at the single-cell level that IFN-γ-expressing Th1 cells co-express IL-23R but do not express Th17 cell signature genes such as Il17a, Il17f and Ccr6. In addition to Ifng, the cells prominently expressed Th1 cell signature genes including Tbx21 and Cxcr3 (FIG. 1d and FIG. 6). A low frequency of cells expressed Rorc, encoding the transcription factor RORγt associated with Th17 cell differentiation, but the expression of Rorc was minimal when compared to the Th1 cell master transcription factor Tbx21 (FIG. 1d and FIG. 6).


Comparing the IL-23R+ vs. the IL-23R subsets from the wildtype cells (Il23reGFP/wt) provided a way to identify genes that may be co-expressed with IL-23R (FIGS. 1e and f). Here, Applicants identified a set of 528 differentially expressed (DE) genes whose expression in Th1 cells is positively or negatively associated with the presence of IL-23R and may be involved in pathogenicity of Th1 cells similar to how IL-23R signaling promotes pathogenicity of Th17 cells13,24. Indeed, the set of genes that were co-expressed with IL-23R included critical effector molecules and transcription factors including Il18r1 and Stat5a (FIG. 1e and Table 1).


Strikingly, Applicants found that the number of differentially expressed genes between the eGFP+ and eGFP populations in knockout cells (Il23reGFP/eGFP) was substantially lower than the IL-23R+ vs. IL-23R comparison in wildtype cells (129 vs 528 at FDR<0.1 with only 33 genes overlapping). These eGFP+ knockout cells would reflect differentiation in response to IL-12 plus IL-21 in the absence of IL-23R signaling. This finding suggests that the majority of genes Applicants identified in the wildtype cells as being differentially expressed between the IL-23R+ and IL-23R populations are more likely to be directly affected by IL-23R signaling.


Applicants then undertook a combined analysis of the expression profiles from both wildtype and IL23R-deficient cells to better distinguish genes directly regulated by IL-23R signaling in Th1 cells (FIG. 1g). To this end, Applicants combined the datasets and incorporated model terms for the presence of eGFP, the genotype (wildtype or IL-23R-deficient), and the interaction of eGFP and genotype (see methods for full details). By testing the interaction term, Applicants sought genes whose expression difference between eGFP+ and eGFP cells was dependent on the genotype. In this manner Applicants identified altogether 219 genes where the presence of wildtype IL-23R was associated with an increase in expression in eGFP+ cells compared to eGFP cells. Of those, Dusp2, Gpr18, Trim27, Itgb1, Gzmb, Pde4b, Plek, Thap11, Panx1, Peli1, Rac1 and Lamp1(CD107a) appeared of particular interest as novel candidate genes dependent on IL-23R signaling and potentially important for pathogenicity of Th1 cells (FIG. 1g and Table 1). Some of these genes have been implicated previously in autoimmune inflammation, such as Panx125 and Rac126. The finding that these genes are regulated in an IL-23R-dependent manner suggests an important function in Th1 cells.


In summary, in addition to pathogenic Th17 cells, Applicants find that Th1 cells can be induced to express IL-23 receptor in vitro through culture with IL-12+IL-21 and that the single-cell transcriptomic profile corresponds to that of Th1 cells. Through this process, Applicants have further identified a unique gene set associated with IL-23R signaling in Th1 cells.


Example 3—IL-23R+ Th1 and IL-23R+Th17 Cells Share Common Gene Signatures but Also Display Subset-Specific Features

To investigate whether IL-23R+ Th1 and IL-23R+ Th17 cells share common features, Applicants differentiated pathogenic Th17 cells with IL-1β+IL-6+IL-23 and sorted IL-23R+ (i.e., eGFP+) and IL-23R (i.e. eGFP) cells for single-cell analysis comparing their transcriptional profiles with those of Th1 cells described above. Interestingly, Applicants find a set of 147 genes whose expression in IL-23R+ and IL-23R cells is shared by Th1 and Th17 cells (FIG. 7a and Table 1). Among the genes highly expressed in both IL-23R+ Th1 and Th17 cells, Applicants find Il22, which has been identified previously as a core component of the pathogenicity signature of Th17 cells9,11. Some genes (179) were expressed only in Th1 cells differentially between IL-23R+ and IL-23R cells such as Il18r1 and Ifng (FIG. 7b and Table 1). Interestingly, 93 genes showed the exact opposite profile in Th1 and Th17 cells, one of which was Il27ra which was highly expressed in IL-23R Th1 cells (FIG. 7c and Table 1). Finally, Il17a and Il17f were prominently expressed in IL-23R+ cells in Th17 cells only and were among 158 genes that were differentially expressed between IL-23R+ cells and IL-23R cells only in Th17 cells (FIG. 7d and Table 1). These results suggest that IL-23R induces a common Th1/Th17 pathogenicity expression profile but also induces a distinct set of genes in Th1 and Th17 cells that likely contribute to their pathogenicity to exert lineage-specific phenotype and function.


Example 4—IL-23R Deficiency Protects from Th1 Cell Adoptive Transfer Colitis

GWAS analysis has implicated IL-23R as a major risk gene for IBD5, but the actual mechanism by which IL-23R signaling promotes the disease has not been fully elucidated. It has been known that naïve T cells that lack IL-23R lose the ability to induce adoptive transfer colitis, presumably by not developing Th17 cells and promoting differentiation of FoxP3+Tregs3,14,18. However, as bonafide Th1 cells elicit adoptive transfer colitis7, Applicants assessed the issue of whether IL-23R has a role in these pathogenic Th1 cells to induce colitis. To test the contribution of IL-23R to the pathogenicity of Th1 cells in vivo, Applicants differentiated wildtype (I123eGFP/wt) and IL-23R-knockout (Il23reGFP/eGFP) Th1 cells in vitro with IL-12+IL-21+IL-23 (see methods for details) and then adoptively transferred them to RAG1−/− recipients (FIG. 2a). Strikingly, Applicants found that Th1 cells that lack IL-23R do not efficiently induce severe colitis, as determined by the histopathological exam of the colon (FIG. 2b). The results therefore establish an important function of IL-23R in the pathogenicity of Th1 cells and their ability to induce colitis.


To test whether the transferred Th1 cells produced IFN-γ or had transdifferentiated into IL-17A-producing Th17 cells, Applicants isolated colonic intraepithelial lymphocytes (IEL) as well as lamina propria lymphocytes (LPL) and tested these cells for the production of IFN-γ, IL-17A and GM-CSF. Animals that received wildtype (Il23reGFP/wt) Th1 cells had a dramatically increased frequency of CD4+ intraepithelial lymphocytes and lamina propria lymphocytes, up to 60-70% of the entire CD45+ population vs. 4%-9% in recipients of knockout (Il23reGFP/eGFP) Th1 cells, pointing to the ongoing inflammatory process (FIGS. 8a, d and f). Interestingly, Applicants found that in the animals studied here, the CD4+ T cells had largely maintained their production of IFN-γ and had not significantly deviated into IL-17A-producing cells (FIGS. 8b, e and g). Furthermore, a sizable frequency of IFN-γ-producing cells in the colon also produced GM-CSF (FIG. 8c). It is known that both in the EAE model and the colitis model Applicants used here, Th17 cells show extensive plasticity and become IL-17A+/IFN-γ+ double positive7,19. The results suggest that at least in these settings, Th1 cells were not plastic and retained a Th1 cell phenotype. Taken together, these data suggest that colitogenic Th1 cells require IL-23R expression in order to induce disease in vivo similar to Th17 cells and that these cells do not transdifferentiate towards a Th17 phenotype. Therefore, pathogenicity mediated by IL-23R signaling is separable and not limited to Th17 cells in vivo.


Example 5—Single-Cell RNA-Sequencing Reveals Transcriptional Signatures of Colitogenic Intestinal Lymphocytes and their Dependence on IL-23R Signaling

To gain a better understanding of the transcriptional programs that may be driven by IL-23R in transferred Th1 cells and therefore associated with pathogenicity, Applicants isolated CD45+CD4+ infiltrating T cells from the intestinal mucosa (both the intraepithelial lymphocytes, IEL, and the lamina propria lymphocytes, LPL) from animals that received either wildtype or IL-23R KO cells by fluorescence-activated cell sorting (FACS). Applicants then performed massively parallel single-cell transcriptional profiling by 10×technology of 32,763 cells (FIG. 2a).


The cells primarily cluster depending on which tissue they were isolated from, with splenic CD4+ T cells segregating from cells of intestinal origin (FIG. 2c). These results confirm previous findings that T cells acquire distinct transcriptional profiles depending on whether they are isolated from secondary lymphoid organs such as the spleen or reside in tissues such as the intestine27. Applicants find the expression of 1224 genes was strongly associated with the tissue of origin (FDR<0.1, |log FC|>0.5), whereas other genes showed a broader expression in cells of all tissue origins (FIG. 2d and Table 2). For instance, CD69 has been proposed as a marker of tissue residency in T cells including in TRM (tissue resident memory) cells and the precise tissue specific expression of Rgs1 suggests that it could be involved in trafficking and tissue residency as well, in particular in the intestinal mucosa28. Klf2, a transcription factor that is important for the expression of CD62L and S1pr1, and which was shown to direct lymphocyte trafficking was highly upregulated in splenic cells suggesting an antagonistic function to CD69 and potentially Rgs1 as well29. Interestingly, the chemokine Cxcl10 was particularly highly expressed in T cells within the LPL but not IEL (FIG. 2d), suggesting a very specific autocrine/paracrine regulation, in particular since the contribution of Cxc110 to the trafficking and retention of pro-inflammatory Th1 cells expressing the corresponding receptor Cxcr3 has been previously identified30,31. Overall, multiple chemokine-related transcripts were expressed in a compartment-specific fashion and therefore likely contribute to the trafficking of Th1 cells to the intestine (FIG. 2d).


In terms of their splenic transcriptional profiles, it appeared that the wildtype Th1 cells (Il23reGFP/wt) and the knockout cells (Il23reGFP/eGFP) isolated from recipient mice were rather uniformly distributed (FIG. 2e). Strikingly, the wildtype and KO cells appeared to instead segregate within the intestinal tissues, suggesting that Th1 cells from the wildtype vs. IL-23R KO mice may attain transcriptionally different expression profiles when they infiltrate the intestine (FIG. 2e). Applicants then asked which genes would be differentially expressed between wildtype and KO cells across the four analyzed tissues (spleen, LPL small intestine (SI), LPL colon and IEL colon) and identified between 84 and 190 genes per tissue (FDR<0.1 and |log FC|>0.5) (Table 2). Applicants identified genes such as Gpr18, Cd160 and Zfp36l2 being differentially expressed dependent on IL-23R signaling in all or most tissues in vivo (FIG. 2f). Interestingly, the chemokine Ccl5 (RANTES), a ligand of Ccr5, exhibited a clear IL-23R dependent expression within the intestine only, suggesting that the regulation of Ccl5 is particularly relevant within the tissue and that IL-23R might contribute to pathogenicity by enabling inflammatory cells to migrate to tissues. Cxcl10 did not show such IL-23R dependent regulation (FIG. 2f). Taken together, the observations support the notion that IL-23R signaling affects the tissue-specific transcriptional expression of novel genes relevant to intestinal inflammation.


Example 6—IL-23R Drives the Expansion of Highly Inflammatory and Colitogenic Th1 Cells in the Lamina Propria as Uncovered by scRNAseq

Lymphocytes residing within the lamina propria exert a critical contribution to elicit intestinal inflammation32. Therefore, Applicants decided to focus on these samples (both from the colon and small intestine) in wildtype (Il23reGFP/wt) and IL-23R KO (Il23reGFPeGFP) cells (FIG. 3a). Applicants partitioned all cells into clusters and identified a total of 12 distinct clusters with characteristic transcriptional profiles within the LPL (FIG. 3b). Applicants then sought to identify clusters consisting of cells with a highly pro-inflammatory and colitogenic gene signature that may be responsible for mediating colitis. Importantly, Applicants noted differential contribution of wildtype or KO cells to some clusters, especially clusters 2, 8, 9 and 10 were dominated by cells from wildtype animals (Il23reGFP/wt) whereas clusters 5 and 7 were dominated by KO cells (Il23reGPF/eGFP) (FIG. 3c). Based on their transcriptional profiles, Applicants found that clusters 2 and 9 consisted of cells that exhibited a highly colitogenic gene signature and may have the ability to drive intestinal inflammation which will be highlighted in detail below (FIG. 3d).


Applicants found that the characterizing genes of cluster 9 (one vs. all comparison, FDR<0.1, |log FC|>0.5 and Table 3) encode a wide range of molecules essential for inflammation and colitis. For example, among the most highly expressed genes was Itgae (CD103) which has been shown to enable pathogenic T cells to migrate to their target tissue and is characteristic of pro-inflammatory colonic T cells in ulcerative colitis33,34. Another highly expressed gene, Ccr9, encodes a gut homing receptor and has been shown to play a crucial role in colitis35. Previously, it was shown that the transmembrane glycoprotein CD38 is important for intestinal inflammation36. Likewise, CD48, a SLAM (signaling lymphocyte activation molecule) family member, is crucial for T cell function in colitis and it has been suggested that CD48 may represent a useful target in human IBD37. Strikingly, an ORF (open reading frame) within the gene AW112010 (encoding a long-noncoding RNA) which was among the top 20 differentially regulated genes within cluster 9 in the data set has been recently shown to be essential in mucosal immunity including colitis38. The expression of this ORF is fairly broad across clusters and the locus appears to be transcribed in the vast majority of cells. However, the expression of AW112010 shows a dramatic increase in expression within the inflammatory cluster 9 (FIG. 3d).


Importantly, in addition to the genes in cluster 9 that have been implicated in the development of colitis, the cluster also contained novel genes not previously associated with the development of colitis. For example, Cd160, the most upregulated gene in cluster 9 encodes an Ig superfamily member39 and has not been assigned a function in colitogenic T cells yet. The gene encoding the nectin receptor family member Cd226 (DNAM-1), was also part of the signature of highly expressed genes in cluster 9. Co-stimulatory receptors such as CD226 play a critical role in T cell activation, autoimmunity and cancer40. Previously, CD226 was shown to be crucial for the activation of cytotoxic lymphocytes and Th1 cells and its expression within cluster 9 suggests that it may play an important role in intestinal inflammation41,42. In summary, the transcriptional analysis of cluster 9 exhibits an entire array of genes critical for intestinal inflammation and identifies novel potential genes important for intestinal inflammation such as Cd160.


Many genes highly expressed in cluster 2 are implicated in IFN-γ signaling (FIG. 3d and Table 3). In fact, IFN-γ signaling has early been identified as being critical for intestinal inflammation in various pre-clinical models of colitis31,43. For example, top differentially genes in this cluster were Ifitm1 (interferon-inducible transmembrane protein), Ifitm2 and Ifitm3. Members of this family are interferon response genes that have been shown to be entry sites in viral infection44. A study in human IBD patients identified IFITM1 as a potential prognostic marker in ulcerative colitis45. Interestingly, Applicants identified many integrins as being part of the list of genes highly expressed within cluster 2, with Itgb1 as the second highest differentially expressed gene and which has previously been implicated in colorectal cancer46. Two additional integrins highly upregulated in cluster 2 (albeit not among the top 20 differentially expressed genes) were Itga4 (position 101) and Itgb7 (position 32). Strikingly, a recent study demonstrated that targeting the leukocyte integrin a4p7 with vedolizumab was more effective in moderately to severely active ulcerative colitis than adalimumab (a humanized monoclonal antibody neutralizing TNF)47.


The observation, that many genes implicated in IFN-γ signaling and lymphocyte trafficking (integrins) were highly upregulated in cluster 2 suggests that this cluster consisted of inflammatory cells that could potentially represent the cellular phenotype of early potential drivers of the intestinal inflammatory response.


The other two clusters that were enriched in wildtype cells (Il23reGFP/wt) were clusters 8 and 10.


Cluster 8 represented a cluster of highly proliferating cells exemplified by the expression of Ki-67 and genes important for cell cycle progression such as Cdc (cell division cycle) genes, including Cdc6 (critical for the initiation of DNA synthesis48) and Cdc20, which is known to activate the anaphase promoting complex/cyclosome APC/C49 (FIG. 9). The observation that cluster 8 was highly enriched with wildtype cells suggests that these cells were actively proliferating within the tissue to contribute to the inflammatory process.


Cluster 10 on the other hand showed high expression of Ccr7 which is commonly correlated with an ability of T cell trafficking and homing to lymph nodes and Peyer's patches50. In addition, cluster 10 cells expressed higher levels of the anti-apoptotic gene bcl2 which is known to be driven by STAT5 signaling and may be an interesting target in IBD as suggested in pre-clinical studies51.


In summary, using single-cell RNA-sequencing, Applicants identify distinct clusters of T cells within the intestinal mucosa that exhibit a highly inflammatory profile, in particular clusters 2 and 9. Furthermore, the observation that these clusters are dominated by wildtype cells suggests that IL-23R signaling critically contributes to the observed expression of inflammatory genes. Importantly, Applicants succeed in identifying novel genes such as Cd160 that may play an important role for intestinal inflammation and IBD.


Example 7—IL-23R is Implicated in the Reciprocal Regulation of Tr-1 Like Cells and Limits their Expansion

Cluster 7 was particularly interesting as it is strongly enriched with IL-23R KO cells which would suggest that this cluster contains predominantly non-pathogenic T cells (FIG. 3c). The 117 genes that characterize this cluster (one vs. all comparison, FDR<0.1, log FC>0.5) include Eomes, Cd27, Gzmk, Lag3 and Il10 (FIG. 3d and FIGS. 10a and b). This finding was of particular significance as these genes have been recently identified to define a novel human IFN-γ+IL-1β+Tr1-like cell type that may be reduced in IBD patients52. In fact, Eomesodermin (Eomes) has been shown to be a key transcription factor of a Tr1-like lineage51. The finding that cluster 7 is predominantly composed of IL-23R KO cells suggests that IL-23R may function as an important gatekeeper and negative regulator for the development of Tr1-like cells in the colonic mucosa. Previously, it was shown that IL-23R is indeed expressed on these IFN-γ+IL-1β+Tn-like cells and therefore IL-23 signaling could potentially regulate development and function of this population54. To Applicants knowledge, this study is the first to provide functional evidence that IL-23R may act as a negative regulator of such Tr1-like cells. In addition, PD1 was shown to be expressed on human Tn-like cells which is highly consistent with the data presented here54 (FIG. 3d). In fact, it was shown that PD1 is implicated in the conversion of human T-BET+ Th1 cells to FOXP3+ Tregs55. Other co-inhibitory molecules such as Lag-3 were also more highly expressed in cluster 7 (FIG. 3d and FIG. 10b). Applicants used a published transcriptional signature that characterizes human Tr-1 like cells and were able to show that it identifies cluster 7 (upregulated compared to other clusters, Wilcoxon rank-sum test p<10−200) providing strong evidence that the cells of cluster 7 are the equivalent of these human cells in this study (FIG. 10c)52. In summary, the results suggest that IL-23R signaling balances the differentiation of colitogenic Th1 vs. Tr cells and therefore effector vs regulatory arms of the immune response.


Interestingly, comparing WT to KO cells within cluster 7 revealed a set of heat shock protein family members, in particular Hspa1a and Hspa1b (FIG. 10d). Heat shock proteins are implicated in the regulation of T cell responses and specific single nucleotide polymorphisms have recently been identified in HSPA1L that distinguish IBD patients from healthy controls56,57. The finding suggests that heat shock proteins of the Hsp70 family, in particular Hspa1a and Hspa1b, may be protective in IBD and regulated in an IL-23R dependent manner.


Example 8—Comparative Analysis of Human IBD GWAS with the scRNAseq Study Nominates Genes of Particular Interest for the Function of Colitogenic Th1 Cells in an IL-23R Dependent Manner

It has become clear from genome-wide association studies (GWAS) that IL-23R plays an important role in IBD5. To investigate if IL-23R signaling is particularly relevant to the expression of other genes found within human IBD GWAS loci in T cells, Applicants conducted a survey of the roughly 240 IBD risk loci that have been identified so far58-61 and tallied their associated genes (about 700 genes in total)58. Within loci that contain multiple genes, Applicants focused on genes that were found to be implicated, for example, by fine-mapping or by expressed quantitative trait loci (eQTL) analysis which reduced the list of genes that Applicants further investigated to 597. Since Applicants established that clusters 2 and 9 were dominated by wildtype cells with a highly inflammatory transcriptional signature Applicants focused the analysis on these two clusters in addition to cluster 7 which was dominated by KO cells to investigate the potential contribution of genes found in GWAS loci to IL-23R mediated pathogenicity. Applicants used within-cluster comparison of WT vs. KO cells and identified genes found within IBD GWAS loci that were expressed in an IL-23R dependent manner (FIG. 3e and Table 3). This finding suggests that IL-23R signaling in Th1 cells may be relevant to induction of genes implicated through GWAS in the development of IBD.


Among the genes in the set implicated through GWAS were Gpr18, Traf3ip2, Ncf4 and Ets1.


Gpr18 was particularly highly expressed in clusters 2 and 9 in an IL-23R dependent manner. Recently, it was shown that certain mutations are increased in ulcerative colitis including in the gene Traf3ip2 (encoding Act1) which is part of the NFKBIZ pathway62. Ncf4 plays an important role in cellular reactive oxygen species (ROS) pathways as part of the NOX2 (NADPH oxidase 2) complex. Ets1 is a transcription factor and essential co-factor of Tbet in Th1 cell-mediated inflammatory responses63


Adhesion and migration regulate major biological outcomes of T cell-mediated autoimmunity. Interestingly, a number of genes implicated in these processes were part of the identified gene signatures of cluster 2, in particular Lsp1, Lpxn (Leupaxin) and Fermt3. Applicants hypothesize that IL-23R signaling may exert pathogenicity also through downstream effects on migration and adhesion.


Notably, some genes were not limited to clusters 2 and 9 in their IL-23R-dependent expression such as Zfp36l2 but exhibited this pattern also across other clusters including cluster 7 suggesting that their genotype-dependent expression may be too dominant than to be confined to a particular cluster (FIG. 3e). Zfp36l2 belongs to a family of RNA binding proteins that have been implicated in Th17 cell biology but their contribution to Th1 cell-mediated autoimmunity remains unknown11,64.


The findings illuminate genes implicated in cellular pathways ranging from trafficking, cellular adhesion (integrins), metabolic regulators and immune cell interaction identified in GWAS IBD risk loci that may prove critical in their contribution to intestinal inflammation driven by IL-23R in colitogenic T cells. The observation that these genes found in GWAS IBD risk loci are driven by IL-23R in colitogenic Th1 cells may suggest that IL-23R and these genes converge mechanistically in a disease relevant manner.


Example 9—Ranking Identifies Novel Genes as Drivers of Intestinal Inflammation in an IL-23R Dependent Manner

In many cases, the combinatorial analysis of several data sets yields a comprehensive insight into useful targets for further analysis as critical genes may not only emerge as being the top differentially expressed genes in a singular data set. Therefore, Applicants combined both in vitro and in vivo single-cell RNA-sequencing data sets Applicants reported above and included data from human IBD GWAS to rank the genes that may have an impact on the development of colitis.


Applicants postulated the following criteria that were important and queried the data set for genes that would match as many criteria as possible: (1) As Applicants were particularly interested in genes potentially conferring pathogenicity, Applicants focused on genes that were most highly expressed in clusters 2 and 9 in comparison to all other clusters and that were differentially expressed between wildtype and KO cells within either cluster 2 or 9; (2) Genes of particular importance to intestinal inflammation may exhibit a highly tissue specific expression and therefore Applicants evaluated their expression comparing splenic and intestinal samples; (3) Applicants asked which genes showed an TL-23R dependent expression in Th1 cells differentiated under IL-12+IL21+TL-23 in vitro; (4) Applicants incorporated as one criterion whether a given gene was previously identified in human GWAS to confer risk and/or is located within a GWAS risk locus for IBD (FIG. 4a and Table 4, see methods for details of ranking).


Gpr18 scored very highly in all criteria including being located within a GWAS risk locus61. Interestingly, it was shown that Gpr18 plays a crucial role for CD8aa+ intraepithelial T lymphocytes within the intestinal mucosa65. The studies suggest it may be a critical mediator of pathogenicity by IL-23R in colitogenic Th1 cells.


The transcription factor NF-fB is critical to T cell function and in particular mutations within the NFKBIZ pathway were recently found to be relevant in ulcerative colitis62. Nfkbiz itself scored highly in the ranking data as a target in colitogenic T cells (FIG. 4a).


Example 10—CD160 Plays an Important Role in Colitogenic Th1 Cells

Finally, Applicants sought to provide conclusive evidence of the critical contribution of candidate genes identified in the studies to T cell-driven intestinal inflammation. To this end, Applicants acquired knockout mice for Cd160, the top differentially expressed signature gene of inflammatory cluster 9 and which ranked prominently in the ranking scheme (FIG. 4a)66. CD160 is an Ig superfamily member and its function in inducing colitogenic T cells and IBD has not been investigated. It has been shown to be important for IFN-γ production in NK cells and being expressed on intraepithelial CD8+ T cells66,67. Applicants differentiated naïve T cells from these CD160 KO mice to Th1 cells in vitro as described above and tested their ability to elicit adoptive transfer colitis. Applicants did not observe a difference between wildtype and CD160 KO Th1 cells to produce IFN-γ or GM-CSF prior to adoptive transfer in vitro (FIGS. 11a and b). The cells did not express any IL-17A prior to adoptive transfer. Strikingly, the recipient animals that received CD160 deficient Th1 cells showed a strong protection from colonic inflammation as assessed by histopathological examination (FIG. 4b). The decrease of inflammation showed a clear trend in the small intestine and was statistically significant in the colon (FIGS. 4b and c) The histopathological analysis was consistent with the shortening of the colon in recipients of wildtype cells (FIG. 4d). When Applicants isolated T cells from mesenteric lymph nodes from recipients of either wildtype or CD160 knockout cells Applicants did not observe a significant difference in IFN-γ expression which was consistent with the observations in vitro suggesting that it was likely not any lack in the ability to produce IFN-γ that protected recipients of CD160 KO cells from developing severe colitis (data not shown). Previously, it was shown that CD160 is important for Gzmb expression in intestinal CD8+ T cells which helps to clear Listeria monocytogenes infection66. Interestingly, this was highly consistent with the observation that CD160 KO cells differentiated in vitro with IL-12+IL+21+IL23 produced less Gzmb compared to wildtype cells which could contribute mechanistically to their diminished colitogenicity in vivo (FIG. 4e). Taken together, the results demonstrate an important function of CD160 to the colitogenicity of Th1 cells in an IL-23R dependent manner.


Example 11—Discussion

IL-23R function has been considered a critical driver of pathogenicity in Th17 cells and important for the regulation of FoxP3+ Tregs but not for other T helper cell subsets. However, several experimental and clinical observations have been difficult to reconcile under this assumption. Applicants provide compelling evidence that IL-23R plays an important role in other pathogenic T cell subsets, in particular a subset of IL-23R+ Th1 cells.


First, Applicants report that bonafide Th1 cells can be differentiated in vitro with IL-12+IL-21 and express similar levels of IL-23R as pathogenic Th17 cells polarized with IL-1β+IL-6+IL-23. This illustrates how the combinatorial action of cytokines crucially determines the functional outcome since IL-21 has been shown to participate with TGF-β to induce pro-inflammatory Th17 cells, not Th1 cells68. In Th17 cells, IL-6 has been shown to induce IL-21 that promoted IL-23R expression in an autocrine manner, and this induction was STAT3 dependent69. Which transcription factor mediates the induction of IL-23R in Th1 cells differentiated with IL-12+IL-21 remains to be determined. However, one such transcription factor could be c-MAF that has been shown to bind to the IL-23R promoter and to work in conjunction with IL-21 in some non-Th17 cells, in particular in the setting of autoimmune diabetes which is known to be Th1 cell-driven70-72.


Applicants continue to show that IL-23R is required in Th1 cells in vivo to acquire full pathogenicity to elicit adoptive transfer colitis. Applicants take advantage of scRNAseq to profile 32,763 cells in a pre-clinical model of colitis including roughly 20000 intestinal T cells and uncover transcriptional signatures that are governed by IL-23R and that are critical to the emergence of pathogenic and colitogenic Th1 cells. The inflammatory signatures of the pre-clinical model were highly reminiscent of human studies in IBD as outlined above. Applicants identify novel candidate genes for T cell-mediated IL-23R dependent pathology and provide a framework of genes identified in previous IBD GWAS as potential drivers in colitogenic Th1 cells. The study therefore contributes to the important effort of identifying and validating genes found within GWAS risk loci having an important function in colonic inflammation and their implication in colitogenic T cells.


Previously, it was shown that Th17 cells show extensive plasticity during an inflammatory response and that Th17 cells eventually may develop features of Th1 cells by upregulating Tbx21 and expressing IFN-γ both in mouse and human1973,74. IL-23R was shown to play an important role in this lineage plasticity19 and it was assumed that IL-23R bearing Th cells that express IFN-γ are solely transdifferentiated Th17 cells. Interestingly, it was shown in the adoptive transfer model of colitis that Th17 cells convert to Th1 cells and that this appears to be essential to Th17 cell mediated disease in this model7. Importantly, Applicants show that bonafide Th1 cells can be differentiated to express Il23r in vitro and that IL-23R deficient Th1 cells lose their ability to elicit intestinal inflammation. Interestingly, Applicants did not observe extended plasticity in the Th1 cells adoptively transferred in the study towards a Th17 cell phenotype. With the exception of cluster 3 in the LPL that contained cells showing a transcriptional signature of Th17 cells including expression of Ccr6, Il17a, Il22, Il17re and Il17f, however, Applicants did not identify IL-17A+ cells by intracellular cytokine when retrieved from the intestinal mucosa in RAG1 KO recipients. Thus, the vast majority of LPL cells showed a strong transcriptional signature of bona fide Th1 cells including expression of Il12rb1, Il12rb2, Cxcr3, Stat1, Stat4, Tbx21 and Ifng.


Applicants speculate that Th1 cells represent a further advanced state of inflammatory trajectory that may be reached with or without transitioning through a Th17 cell state. Strikingly, it has been demonstrated that both Th17 and Th1 cells may ultimately give rise to T cells with regulatory function at the resolution of inflammation55,75.


Importantly, Applicants describe here a dichotomous function of IL-23R in promoting inflammatory cells on one hand and on the other hand limiting the expansion of Tr cells with a regulatory function, identified by expression of signature genes such as Eomes, Cd27, Il10ra, Il10, Gmzk and co-inhibitory receptors Lag-3 and Pdcd1. A concept is evolving in which IL-23R serves not only as a critical driver of inflammatory T cells but a central integrator of immune responses within the local immunological milieu. In fact, in addition to the emergence of Tr1-like cells in IL-23R deficient cells in the study, it has been shown previously that IL-23R is also expressed on colonic FoxP3+ Tregs, making these cells receptive to sudden inflammatory changes that limit their suppressive effector functions in the presence of the pro-inflammatory cytokine IL-2314,15.


In the setting of Th17 cells, it was shown that the salt-sensing kinase Sgkl is important in regulating their plasticity toward FoxP3+ T cells76. Which mediators downstream of IL-23R signaling suppress a Tr1 cell fate in Th1 cells remains to be determined.


A ranking scheme combining both in vitro and in vivo transcriptional signatures and their dependence on IL-23R signaling enabled us to identify novel drivers of T cell pathogenicity and Applicants succeeded in validating one of these candidates, CD160. Indeed, CD160 emerged in a recent study profiling the cellular composition and transcriptional signatures of ileal biopsies from Crohn's patients although the functional significance remained unclear77. Interestingly, CD160 was shown to be very important for intraepithelial type I ILCs which are amplified in Crohn's disease and was important for the pathogenicity of ILCis in the anti-CD40 colitis model in addition to control of L. monocytogenes infection. These data suggest that CD160 is not only important for CD4+ T cells as demonstrated in the study but for other immune cells such as ILC1s and CD8+ T cells as well66,78. To validate that Applicants had not inadvertently included immune cells other than CD3+CD4+ T cells in the analysis that have been shown to express CD160, Applicants confirmed that the cells sequenced lacked expression of NK cell markers and expression of CD8 (FIG. 12).


Another important candidate that emerged and which scored highly in all categories in the ranking (FIG. 4a) was Gpr18. Interestingly it was identified as a central part of a transcriptional signature in myeloid cells driving a Th1 cell intestinal inflammation triggered by the colonization of germ-free mice with Klebsilla isolated from a Crohn's patient79


In summary, Applicants uncouple IL-23R as a purely Th17 cell-specific pathogenicity factor and implicate it in being critical for evoking a pathogenic phenotype in Th1 cells. Furthermore, through the powerful combination of a highly relevant pre-clinical model of colitis with massively parallel single-cell RNA-sequencing and integration of GWAS data from IBD patients, Applicants identify novel potential drivers of IL-23R-mediated T cell pathogenicity and validate one of these candidates. Applicants hope that the discovery of the role of IL-23 in the induction of pathogenic Th1 cells and their contribution to autoimmune disease on one hand and the inhibition of IL-10 producing Tr cells on the other hand may identify novel targets and prove useful for the development of therapeutic intervention in multiple human autoimmune diseases.


Example 12—Materials and Methods

Mice. IL-23ReGFP reporter mice were described previously (Awasthi et al., 2009). The following strain was purchased from The Jackson Laboratories: B6.129S7-Rag1tm1Mom/J (known as Rag1−/−; Stock No.: 002216). CD160−/− mice were a kind gift of Dr. Arlene Sharpe and previously described (Tan et al., 2018). All animals were bred and maintained under specific-pathogen-free (SPF) conditions. Genotyping was performed with DNA isolated from tail biopsies. All experiments were approved by and carried out in accordance with guidelines of the Institutional Animal Care and Use Committee (IACUC) at Harvard Medical School and Brigham and Women's Hospital.


In vitro T cell differentiation. A single-cell suspension was prepared from spleen and lymph nodes and red blood cells were removed by lysis with ACK buffer (Lonza). CD4+ T cells were enriched using microbeads (Miltenyi Biotec, Cat. #.: 130-117-043). Naïve CD4+ T cells (CD4+CD44low CD62LhighCD25) were isolated by fluorescence-activated cell sorting (FACS) using a custom-built BD FACSAria instrument. Sorted naïve CD4+ T cells were activated with plate-bound anti-CD3 and anti-CD28 antibodies (1 μg/ml; BioXCell; Clone 145-2C11 and clone PV-1, respectively) in 96-well flat-bottom plates (50-100×103 cells/per well). Cells were cultured for 5 days (cytokine screen) with the following cytokine concentrations: IL-1β (20 ng/ml); IL-6 (25 ng/ml); IL-23 (20 ng/ml); IL-12 (20 ng/ml); IL-21 (20 ng/ml); TGF-β (2 ng/ml); IL-18 (20 ng/ml). All recombinant cytokines were purchased from Biolegend (IL-21), R&D (IL-12, IL-1β, IL-6, IL-23) and Miltenyi Biotec (hTGF-β).


Flow cytometry and antibodies. Single-cell suspensions were stained with diluted antibodies (1:100) in ice-cold PBS+2% FBS. Dead cells were identified with either 7-AAD (BD Biosciences) or viability dye eFluor 506 (eBioscience). For intracellular cytokine staining (ICC), cells were stimulated for 4 hr at 37° C. with phorbol 12-myristate 13-acetate (PMA, Sigma), ionomycin (Sigma) and monensin (GolgiStop; 1:1000; BD Biosciences). Then, cells were stained for surface markers and viability. Cells were fixed and permabilized according to the manufacturer's instructions (BD Cytofix/Cytoperm kit). All flow cytometric data were acquired with either a BD LSRII or Fortessa instrument and analyzed with FlowJo (BD).


The following antibodies labeled with different fluorophores were purchased from Biolegend unless otherwise indicated: anti-CD4 (RM4-5), anti-CD25 (PC61), anti-CD44 (IM7), anti-CD62L (Mel14), anti-IL-17A (TC11-18H10.1), anti-IFN-7 (XMG1.2), anti-GM-CSF (MP1-22E9, BD), anti-CD45 (30-F11).


Adoptive transfer colitis. Naïve T cells were isolated from donor mice by FACS and differentiated for 6 days prior to adoptive transfer with the following paradigm. Naïve CD4+ T cells (in 6 well dishes, 1×106 cells/ml) were cultured for 48 hrs on anti-CD3/anti-CD28 coated plates with the cytokines IL-12 (10 ng/ml)+IL-21 (20 ng/ml). After 48 hrs, the cells were passaged onto non-coated plates and IL-2 (20 ng/ml) was added to the culture. Cells were passaged if needed 1:2. On day 4, IL-23 (20 ng/ml) was added to the culture. During the entire culture, the medium was supplemented with anti-IL-4 antibody (BioXcell; clone 11B11). On day 5, a small sample was taken and used for ICC to determine IFN-γ+ cells and cells to be adoptively transferred were re-stimulated by passage onto anti-CD3/anti-CD28-coated plates for at least 24 hrs. After 6 days, cells were harvested, washed in ice-cold PBS and viability was assessed with Typan Blue staining. Cells to be injected were normalized based on IFN-γ expression determined by ICC and 400000 viable IFN-γ+ cells were injected intraperitoneally per animal. As recipients, sex-matched RAG1−/− animals were used. The weight was measured pre-adoptive transfer and routinely over the course of the experiment.


For histopathology, the colon and small intestine were fixed in 10% formalin and processed by the Harvard Medical School rodent histopathology core for H&E staining. The severity of disease was assessed in a blinded manner by an experienced histopathologist. The following scoring system was used: 0 (healthy)-4 (most severe disease).


Isolation of intestinal lymphocytes. Intestinal lymphocytes were isolated from RAG1−/− recipients using a lamina propria dissociation kit according to the manufacturer's instructions (Miltenyi Biotec, Cat. No.: 130-097-410). Briefly, intestines were isolated and flushed with ice-cold buffer. The small intestine and colon were separated, opened longitudinally with scissors, turned inside-out and then cut into small pieces (<1 cm). Then, the intraepithelial lymphocytes (IEL) were shaken off with buffer containing 1 mM DTT with gentle rotation at 37° C. After the incubation period, the IEL were swiftly filtered (100 μm), washed with complete medium and kept on ice. This step was repeated once followed by a washing step to remove DTT. Then, the procedure was continued to isolate the lamina propria lymphocytes (LPL). For digestion of the intestinal mucosa, the samples were gently incubated with a proprietary enzymatic solution in C-tubes (Miltenyi Biotec, Cat. No.: 130-096-334) at 37° C. for at least 30 minutes using a rotator. After the enzymatic incubation, the samples were homogenized using a gentleMACS (Miltenyi Biotec) and the program m_intestine_01.


For overnight culture, to assess the cytokine profile of intestinal T cells, the cells were further isolated using a Percoll (GE Life Sciences/Cytiva) gradient centrifugation to remove cell debris and fat tissue.


Analysis of ex vivo cytokine production by intestinal lymphocytes. IEL and LPL were cultured overnight in complete medium with IL-7 (20 ng/ml, Biolegend)+IL-23 (20 ng/ml, R&D). The next day, the cells were stimulated with PMA/ionomycin+GolgiStop for 4 hrs as described above. ICC was performed and the cells stained for IL-17A, IFN-γ and GM-CSF.


Single-cell RNA-sequencing (scRNAseq). For full-length scRNAseq, single, viable in vitro differentiated CD4+ T cells were sorted into 96-well plates containing 5 μl TCL Buffer (QIAGEN) with 1% 2-mercaptoethanol, centrifuged and frozen at −80° C. SMART-Seq2 protocol was carried out mainly as previously described (Singer et al., 2016). For droplet-based 3′ end massively parallel single-cell RNA-sequencing, sorted (FACS) CD45+CD4+ intestinal T cells were encapsulated into droplets, and libraries were prepared using Chromium Single Cell 3′ Reagent Kits v2 according to the manufacturer's protocol (10×Genomics). Generated libraries were sequenced on a HiSeq X (Illumina).


RNA isolation and quantitative PCR. Total RNA was isolated with the RNeasy kit according to the manufacturer's instructions (Qiagen). In brief, cells were homogenized with 200μl RLT buffer supplemented with 2-mercaptoethanol by gentle pipetting and then an equal amount of 70% ethanol was added, the samples were mixed by inversion and RNA was captured through a centrifugation step with silica-based columns. Purified RNA was reverse-transcribed using Superscript II enzyme and random hexamer primers (Invitrogen). Taqman probes for genes of interest were purchased from Applied Biosystems. A ViiA7 Real-time PCR system (Applied Biosystems) was used for amplification and data acquisition.












Taqman probes










Taqman assay
Gene







Mm00519943_m1
Il23r



Mm01168134_m1
Ifng



Mm00439618_m1
Il17a



Mm00450960_m1
Tbx21



Mm01261022_m1
Rorc



Mm01219775_m1
Stat3










Statistical analysis. Details regarding the statistical analyses can be found in the figure legends. Statistical analysis was performed using GraphPad Prism 8.0. A p-value p<0.05 was considered significant.


Analysis of in-vitro SmartSeq2 single-cell transcriptional profiles. Sequencing reads were initially filtered with Trimmomatic 0.3280 to remove low quality ends and adapter sequences. A combination of Bowtie2 v2.2.981 was used to align reads to a reference transcriptome derived from the GRCm38 Mus musculus genome (NCBI Refseq). RSEM 1.2.3182 was used to compile the transcriptome and estimate transcript abundance following read alignment. Prior to alignment, the GRCm38 reference was augmented to include the modified eGFP+IL23R functional knockout transcript.


Prior to downstream analysis, cell libraries were excluded if they contained less than 800,000 reads or more than 3 million reads. Additionally, libraries with less than a 40% alignment rate were withheld. Finally, genes detected in less than 5 cell libraries were discarded prior to differential expression.


Initial inspection of the RNA-seq libraries showed that the dominant source of variation between cells could be attributed to differences in cell cycle progression. To reduce the effect of cell cycle on differential expression testing, two cell-cycle ‘scores’ per cell were computed and input as covariates into the differential expression model. To compute these scores, Applicants first subset the expression matrix, retaining only 97 genes identified as G1/S or G2/M enriched genes in a previous study83. Then, PCA was run on the log(TPM+1) expression values and the first two component scores per cell were extracted.


To identify differentially expressed genes, the MAST84 R package was used. When fitting the hurdle model, in addition to the covariates of interest both cell cycle components (described above) as well as the number of detected genes per cell were used to reduce false positives due to cycling state or mRNA capture rates. P-values were corrected with the Benjamini Hochberg FDR procedure and genes were accepted at an FDR<0.1 threshold. To identify genes whose expression differed between the GFP+ and GFP subsets in a genotype-dependent manner (and therefore may be perturbed as a consequence of Il-23 receptor signaling), data from all four subsets (Il23RWT/eGFP and Il23ReGFP/eGFP, GFP+/− both) were combined and modeled with categorical covariates for GFP, Genotype, and a GFP:Genotype interaction term (in addition to the cell cycle and detection rate terms). Genes whose expression differed between the FACS sorted GFP subsets were first identified by comparing this full model to a reduced model without the GFP and GFP:Genotype terms, retaining those with FDR<0.1. Then, in this subset, Applicants tested the GFP:Genotype interaction term specifically and retained genes with FDR<0.1.


For visualization, the dataset was reduced using principal components analysis (PCA) followed by tSNE85. Prior to running PCA, the log(x+1) transformed TPM expression values were normalized by regressing out three cell-level covariates: the number of detected genes, and both cell-cycle components. The top 30 components from PCA were then used as input to the tSNE procedure (with perplexity=30) to further reduce the data to 2 dimensions.


When comparing the GFP-associated expression between T cells stimulated under Th1 or Th17-producing conditions, an effect was considered “common” using the criteria FDR<0.05 in at least one comparison and (unadjusted) p-value <0.05 in the other with a log fold-change in the same direction. Opposite effects satisfied the same significance criteria but with a log fold-change of opposing signs, and Th1/Th17-specific effects satisfied FDR<0.05 in one group but p-value >0.05 in the other.


Analysis of In-Vivo 10×-Sequenced Single-Cell Libraries


Alignment and Preprocessing. To quantify gene expression, samples were individually aligned to the mm10 Mus musculus genome using CellRanger v2.0.2. In total, 14 samples were collected, however two samples of intraepithelial lymphocytes in the small intestine from batch 1 were discarded as the IL23R knockout sample did not pass quality checks (insufficient barcodes belonging to cells). The remaining 12 samples were used in downstream analysis.


Merging and Filtering. An initial analysis was performed on the concatenation of all samples to identify and remove dying or contaminating cell types. All 12 samples were modeled with scVI86, selecting genes expressed in at least 100 cells, using 10 latent components, and encoding each sample ID as a batch variable so as to remove tissue and genotype specific effects.


The resulting latent space was then clustered into 11 clusters using the Louvain algorithm as implemented in SCANPY87 with the following settings: n_neighbors=10 and resolution=0.5. Of these four clusters were marked for removal in all subsequent analysis (across all samples), in total consisting of 7.6% of all 32,763 cells.


One cluster, c8, was characterized by low recovered UMI counts, a low proportion of ribosomal coding RNA, a high proportion of mitochondrial RNA, and very few other distinguishing genes. These were removed as being likely low-quality measurements from damaged cells.


Another cluster, c9, was identified as a possible contaminant cell type due to marked lack of CD4 and CD52 expression. Similarly, cluster c10 lacked T cell markers and had high expression of hemoglobin-related genes.


Finally, cluster c6, despite exhibiting Th17-related genes (Ccr6, Il-23r, Rorc, and IL-22), was removed as the lack of CD3 expression, lack of TCR expression, and distinct lack of any IL-23r-eGFP detection (despite significant Il-23r detection), indicated that these were likely LTi ILC3 cells from the recipient mouse and therefore not part of the genotype-perturbed donor cells of interest in this experiment. After this stage of filtering, a total of 30,259 cells remained for downstream analysis.


Between Tissue Analyses. The combined UMAP plots of FIG. 2 were generated by first modeling all cells with scVI86, and then running the UMAP88 algorithm using SCANPY87 with n_neighbors=30. When running scVI, the two experimental batches were encoded as the batch variable and zero-inflation in the model was disabled. Additionally, genes were pre-filtered to retain A) genes expressed in at least 100 cells and B) genes with high fano factor: genes divided into 30 bins based on mean, fano factor computed for each gene—using the UMI-depth normalized counts—and genes retained with a fano factor greater than 2 MAD (median absolute deviations above median) per bin.


For the heatmap in FIG. 2E, edgeR89 was run to compute average expression per tissue and to determine the genes with the highest tissue specificity, the top 500 of which were plotted. The model was fit in the form “Batch+Tissue” and the Tissue coefficient was tested with the likelihood ratio test. When computing within-tissue differential expression based on Genotype, edgeR was used to compute differential expression (between control and eGFP/eGFP cells) using the likelihood ratio test.


Within-Tissue Analysis: Lamina Propria Lymphocytes. Samples from the lamina propria (6 total—batch 1: control and knockout in colon and batch: 2 control and knockout in colon and small intestine) were grouped together and modeled with scVI86 (8 components, zero-inflation enabled, genes retained that were expressed in 10 cells or more and the Fano filter as described in the previous section). As broad genotype-specific differences in expression (e.g., heat shock proteins), prevented cells from clustering together, Applicants regressed out individual sample differences as if they were batch (i.e., encoded sample ID as the batch variable) and instead assessed the resulting clusters in terms of proportional representation (control vs. knockout) and within-cluster differential expression (control vs knockout). UMAP and Louvain clustering were run on the resulting 8 components as implemented in SCANPY87 with the following parameters: n_neighbors=30 and (for Louvain) resolution=0.9.


Changes in cluster composition were adjusted by the number of cells recovered using the following relation:







Genotype


Ratio

=


(


Control


Cells


in


Cluster


Total


Control


Cells


)

/

(


Knockout


Cells


in


Cluster


Total


Knockout


Cells


)






To identify marker genes per cluster, edgeR89 was used to compute log fold-change and significance when comparing cells in the cluster vs all other cells (1 vs. all differential expression). Similarly, edgeR was used to determine differential expression within cluster (control vs. knockout cells).


The Tr1 signature from Gruarin et al., 201952 is composed of the 51 genes differentiated Tr1 cells from other CD4 cells in FIG. 1A of that study. Per-cell signature scores were calculated using VISION90 and the expression matrix scaled to the median number of UMIs per cell.


Target Prioritization (Ranking)


For each gene, Applicants computed an overall score with four components. Genes were then ranked by a weighted sum of these components. The components are defined as:


1. In-vivo, Cluster Specific—the maximum of:

    • The log fold-change of genes significant (FDR<0.1) in the cluster 2 vs. all comparison
    • The log fold-change*0.5 of genes significant (FDR<0.1) in the cluster 9 vs. all comparison
    • The log fold-change of genes significant (FDR<0.1) in the within-cluster (cluster 2) control vs. knockout comparison
    • The log fold-change*0.5 of genes significant (FDR<0.1) in the within-cluster (cluster 9) control vs. knockout comparison


      2. In-vivo, Tissue Specific—the maximum of:
    • The log fold-change for genes significant (FDR<0.1) in the LPL vs. Spleen comparison
    • The log fold-change for genes significant (FDR<0.1) in the within-LPL control vs. knockout comparison


For both the above in-vivo categories, negative log fold-changes were truncated at 0 (to select specifically for genes upregulated in the cluster of interest or in control cells) and the overall score per gene was limited to 2.


3. In-vitro, Summary—the maximum of:

    • The log fold-change for genes with significant (FDR<0.1) genotype-independent differences in the in-vitro GFP+vs. GFP− comparison
    • The log fold-change of the genotype-dependent effect (GFP+×Genotype Ctrl) in the in-vitro linear model


For the above, in-vitro category, the overall score per gene was limited to 3.


4. GWAS:





    • Applicants assigned a GWAS score of 1 for genes within GWAS loci for Ulcerative Colitis or Crohn's Disease (as identified by Jostins et. al., 2012; Liu et. al., 2015; DeLange et. al., 201758,60,61 and compiled by DeLange et al., 201758). Alternate genes were discarded for loci in which a specific gene has been confidently implicated by fine-mapping, eQTL, or target sequencing studies (as compiled by DeLange et al. 201758).





The final ranking was determined by combining all four categories using the following weightings:





Overall Score=(In-vivo,Cluster Specific)×2+(In-vivo,Tissue Specific)×1+(In-vitro,Summary)×1+(GWAS)×2


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Tables

Table 1A-1D. Tables related to the Smart-Seq2, in-vitro T cell cytokine stimulation experiments. Includes the results of differential expression comparisons (GFP+ vs GFP− comparisons along with the results of the combined, two-factor model.


Table Heading Descriptions:


Each section represents the output of MAST in computing a differential expression test (See Methods text for full details).


Ctrl GFP+vs GFP−: GFP coefficient (GFP+vs GFP−), only Ctrl cells


KO GFP+vs GFP−: GFP coefficient (GFP+vs GFP−), only KO cells


Combined Model: Analysis of the interaction term (GFP:Genotype) in a combined model with both Ctrl and KO cells.


Coefficient tested is for GFP+:GenotypeCtrl


Th1: Cells stimulated in Th1-polarizing conditions (IL12+IL21+IL23)


Th17: Cells stimulated in Th17-polarizing conditions (IL1+IL6+IL23)


Descriptions for MAST (common) to all sections:


Gene: Gene for which the test was computed


coefC: continuous coefficient in the MAST hurdle model


pvalC: p-value associated with the continuous coefficient


coefD: discrete coefficient in the MAST hurdle model


pvalD: p-value associated with the discrete coefficient


pvalH: overall p-value associated with the MAST hurdle model


log FC: log 2 effect size associated with the tested coefficient


FDR. Benjamini-Hochberg False Discovery Rate









TABLE 1A







Th1 Ctrl GFP+ vs GFP−














Gene
coefC
pvalC
coefD
pvalD
pvalH
logFC
FDR

















IL23R
1.61
2.41E−05
  4.54E+00
5.84E−27
1.06E−29
4.76
1.38E−25


EGFP_IRES_IL23R
2.40
3.81E−04
  4.26E+00
1.69E−25
4.04E−27
3.81
2.62E−23


RPS2
1.00
2.35E−19
−1.20E−16
1.00E+00
2.68E−18
1.00
1.16E−14


H2-T23
−0.96
9.22E−19
−1.20E−16
1.00E+00
1.03E−17
−0.96
3.35E−14


CBX3
−0.77
1.15E−14
−1.20E−16
1.00E+00
1.13E−13
−0.77
2.44E−10


VAPA
1.69
3.39E−14
  1.84E+00
1.21E−01
9.86E−14
1.75
2.44E−10


IL4
−3.47
2.74E−03
−2.97E+00
5.21E−12
5.17E−13
−3.13
9.58E−10


RPSA
−0.46
6.37E−14
−1.20E−16
1.00E+00
6.09E−13
−0.46
9.87E−10


RNF187
1.72
4.02E−11
  2.07E+00
4.33E−04
6.96E−13
2.44
1.00E−09


ARGLU1
−1.05
1.14E−13
−1.20E−16
1.00E+00
1.08E−12
−1.04
1.40E−09


CLASP2
1.86
1.02E−11
  1.61E+00
1.25E−02
3.94E−12
2.05
4.65E−09


RPS12
−0.49
7.22E−13
−1.20E−16
1.00E+00
6.61E−12
−0.49
7.14E−09


TPT1
−0.43
1.48E−12
−1.20E−16
1.00E+00
1.34E−11
−0.43
1.34E−08


LARS2
0.60
7.74E−12
−1.20E−16
1.00E+00
6.77E−11
0.60
6.27E−08


ANXA2
1.11
1.41E−11
  7.73E−01
6.73E−01
1.12E−10
1.12
9.67E−08


SMOX
1.55
3.89E−11
  9.62E−01
1.97E−01
1.43E−10
1.78
1.16E−07


RPL12
−0.39
2.95E−11
−1.20E−16
1.00E+00
2.51E−10
−0.39
1.92E−07


MAP3K1
−1.20
2.66E−10
−1.66E+00
4.43E−02
2.85E−10
−1.27
2.05E−07


RNH1
0.80
9.93E−11
  1.20E+00
3.94E−01
5.73E−10
0.84
3.91E−07


RPS20
−0.39
7.32E−11
−1.20E−16
1.00E+00
6.11E−10
−0.39
3.96E−07


RPL5
−0.31
9.11E−11
−1.20E−16
1.00E+00
7.57E−10
−0.31
4.67E−07


EIF3F
0.76
1.14E−10
−1.20E−16
1.00E+00
9.41E−10
0.76
5.54E−07


PDCD4
−1.10
3.18E−08
−2.96E+00
1.14E−03
1.14E−09
−1.29
6.45E−07


NSUN2
1.15
2.83E−10
−7.08E−01
2.65E−01
1.23E−09
0.88
6.64E−07


TIMP1
1.02
8.98E−02
2.06E+00
1.41E−09
2.60E−09
4.05
1.35E−06


1110008F13RIK
1.43
4.97E−07
  1.18E+00
2.86E−04
4.50E−09
2.27
2.24E−06


PHLDA3
1.09
1.14E−03
  1.69E+00
2.26E−07
7.61E−09
2.49
3.53E−06


ACTB
−0.45
9.71E−10
−1.20E−16
1.00E+00
7.63E−09
−0.45
3.53E−06


RNR1
0.90
1.61E−09
−1.20E−16
1.00E+00
1.25E−08
0.90
5.48E−06


S1PR1
1.16
9.45E−07
  1.74E+00
4.45E−04
1.27E−08
2.07
5.48E−06


ANP32B
1.20
5.36E−09
−1.87E+00
1.36E−01
1.33E−08
1.13
5.56E−06


PSMB9
−0.67
2.45E−09
−1.20E−16
1.00E+00
1.88E−08
−0.67
7.63E−06


SLC4A11
1.32
1.86E−08
  8.08E−01
4.93E−02
1.95E−08
1.86
7.68E−06


PELI1
1.22
9.77E−07
  2.00E+00
1.38E−03
3.75E−08
1.78
1.43E−05


HSH2D
−0.80
1.29E−01
−2.16E+00
2.04E−08
4.66E−08
−1.36
1.72E−05


LSM4
0.93
1.41E−08
  1.48E+00
2.47E−01
5.29E−08
0.97
1.91E−05


RPL30
−0.36
7.69E−09
−1.20E−16
1.00E+00
5.72E−08
−0.36
1.95E−05


H2-Q10
1.07
4.40E−05
  1.60E+00
4.35E−05
5.58E−08
2.50
1.95E−05


UCK2
1.31
6.31E−08
  1.63E+00
4.46E−02
5.88E−08
1.60
1.95E−05


RPS27A
−0.28
1.08E−08
−1.20E−16
1.00E+00
7.97E−08
−0.28
2.58E−05


KLF6
1.20
8.41E−08
  1.07E+00
5.25E−02
8.90E−08
1.59
2.81E−05


CALM2
0.71
1.35E−08
  5.59E−01
8.74E−01
9.78E−08
0.72
3.02E−05


SRM
1.24
1.51E−08
−1.45E−02
9.37E−01
1.10E−07
1.12
3.31E−05


ENSA
−1.06
2.93E−05
−1.63E+00
1.55E−04
1.26E−07
−1.82
3.72E−05


CANX
−0.55
2.07E−08
−1.20E−16
1.00E+00
1.50E−07
−0.55
4.31E−05


PAXBP1
−1.00
1.08E−05
−1.57E+00
6.42E−04
1.84E−07
−1.54
5.19E−05


CLPTM1
1.05
1.60E−05
  1.36E+00
4.70E−04
2.01E−07
1.73
5.54E−05


DUSP2
1.18
7.41E−04
  1.64E+00
1.14E−05
2.22E−07
2.64
5.99E−05


NPTN
−1.09
2.12E−05
−1.43E+00
5.90E−04
3.24E−07
−1.66
8.39E−05


OST4
−0.93
7.14E−08
−1.29E+00
3.51E−01
3.22E−07
−0.96
8.39E−05


TMEM161B
−1.16
6.96E−05
−1.21E+00
2.35E−04
4.23E−07
−0.96
1.07E−04


CSF1
0.26
6.40E−01
  1.96E+00
6.85E−08
4.29E−07
1.23
1.07E−04


RBMS1
0.89
4.12E−04
  1.87E+00
4.78E−05
5.02E−07
1.90
1.23E−04


GM5111

1.00E+00
  3.79E+00
5.48E−07
5.48E−07

1.32E−04


ACTR2
−0.57
9.10E−08
−1.20E−16
1.00E+00
6.30E−07
−0.57
1.48E−04


S100A10
0.66
9.31E−08
−1.20E−16
1.00E+00
6.43E−07
0.66
1.49E−04


CASP6
0.94
1.18E−07
−4.16E−01
6.84E−01
7.43E−07
0.93
1.69E−04


ID2
−1.20
8.17E−07
−8.88E−01
5.25E−02
8.00E−07
−1.69
1.76E−04


TMEM30A
0.86
7.60E−05
  3.04E+00
4.20E−04
7.92E−07
1.38
1.76E−04


RALA
0.64
1.56E−04
  1.97E+00
2.37E−04
9.11E−07
1.52
1.97E−04


RN7S1
0.55
1.10E−02
  1.46E+00
4.22E−06
1.00E−06
1.68
2.03E−04


RN7S2
0.55
1.10E−02
  1.46E+00
4.22E−06
1.00E−06
1.68
2.03E−04


RPL7A
−0.27
1.41E−07
−1.20E−16
1.00E+00
9.63E−07
−0.27
2.03E−04


EMB
0.78
1.49E−07
  5.59E−01
8.74E−01
1.00E−06
0.79
2.03E−04


RORA
0.71
1.68E−02
  .49E+00
3.80E−06
1.31E−06
1.35
2.62E−04


RPS21
−0.33
2.03E−07
−1.20E−16
1.00E+00
1.37E−06
−0.33
2.69E−04


IZUMO1R
−1.27
8.34E−06
−8.83E−01
8.08E−03
1.46E−06
−2.15
2.82E−04


MAPK1
0.96
1.95E−05
  1.46E+00
3.78E−03
1.65E−06
1.52
3.14E−04


RORC
0.35
5.10E−01
  1.72E+00
3.40E−07
1.81E−06
1.54
3.39E−04


ZFP622
1.36
4.16E−07
  2.86E−01
3.77E−01
1.85E−06
0.96
3.39E−04


RPS15
−0.26
2.76E−07
−1.20E−16
1.00E+00
1.84E−06
−0.26
3.39E−04


OSTF1
1.03
9.09E−07
  1.19E+00
1.81E−01
2.37E−06
1.24
4.27E−04


GATA3
−0.93
7.00E−03
−1.87E+00
2.01E−05
2.97E−06
−2.13
5.28E−04


ERMN
0.94
7.85E−03
  1.87E+00
2.09E−05
3.42E−06
2.39
5.99E−04


TPR
0.76
1.71E−06
  1.26E+00
1.39E−01
3.57E−06
0.80
6.18E−04


PPP1R16B
−0.92
2.35E−05
−1.80E+00
7.54E−03
3.68E−06
−1.12
6.28E−04


PRRC2A
0.60
6.75E−06
  2.27E+00
3.52E−02
4.34E−06
0.65
7.31E−04


PRKCH
0.97
1.17E−06
  5.94E−01
3.08E−01
4.42E−06
1.17
7.35E−04


HSD17B10
0.72
1.00E−06
−6.85E−01
5.01E−01
5.08E−06
0.64
8.34E−04


RPLP2
−0.26
8.06E−07
−1.20E−16
1.00E+00
5.18E−06
−0.26
8.39E−04


WNT10B
0.21
8.48E−01
  2.38E+00
8.43E−07
5.30E−06
0.87
8.49E−04


RPL28
−0.26
8.74E−07
−1.20E−16
1.00E+00
5.59E−06
−0.26
8.84E−04


SLC29A2
1.16
1.12E−02
  1.40E+00
2.58E−05
5.72E−06
1.54
8.93E−04


PDE4B
1.24
6.38E−05
  1.17E+00
4.40E−03
5.85E−06
1.87
9.03E−04


INHBA
0.59
2.70E−01
  1.60E+00
1.96E−06
6.63E−06
2.84
1.01E−03


ATP6V0D2
0.35
3.06E−01
  1.57E+00
1.94E−06
7.14E−06
2.43
1.08E−03


PSME1
−0.38
1.21E−06
−1.20E−16
1.00E+00
7.63E−06
−0.38
1.14E−03


RBM17
0.82
1.45E−06
  1.04E+00
5.84E−01
7.81E−06
0.83
1.15E−03


TMEM160
0.80
3.46E−04
  1.33E+00
1.09E−03
8.02E−06
1.76
1.17E−03


LAMA5
−0.75
2.70E−04
−1.48E+00
1.50E−03
8.51E−06
−1.25
1.20E−03


ITSN2
1.33
1.34E−06
−8.48E−03
9.63E−01
8.43E−06
0.96
1.20E−03


CALM1
0.51
1.65E−06
−6.40E−01
5.31E−01
8.46E−06
0.48
1.20E−03


GGNBP2
1.13
1.46E−06
  2.60E−01
7.22E−01
8.61E−06
1.14
1.20E−03


PPP4C
0.77
5.51E−06
  1.87E+00
1.18E−01
9.66E−06
0.89
1.33E−03


IFI27L2A
−0.74
3.38E−06
−1.60E+00
2.21E−01
9.72E−06
−0.78
1.33E−03


YIPF4
0.76
1.23E−05
  1.63E+00
4.93E−02
1.02E−05
1.07
1.38E−03


IIGP1
−0.69
3.46E−02
−1.38E+00
1.79E−05
1.08E−05
−1.99
1.44E−03


UTP18
1.43
2.29E−06
  1.96E−01
5.73E−01
1.21E−05
1.14
1.59E−03


D030056L22RIK
1.48
3.74E−03
  1.46E+00
1.65E−04
1.24E−05
1.11
1.59E−03


CCDC71L
0.78
9.23E−03
  1.30E+00
6.99E−05
1.24E−05
1.23
1.59E−03


USP39
0.78
6.80E−05
  1.53E+00
9.48E−03
1.24E−05
1.37
1.59E−03


GTF2A1
−1.08
2.05E−06
  6.32E−02
8.89E−01
1.26E−05
−0.77
1.60E−03


BHLHE41
−0.10
2.24E−01
−1.46E+00
4.50E−06
1.29E−05
−0.25
1.62E−03


SUMF1
1.80
1.20E−04
  9.46E−01
5.61E−03
1.32E−05
1.03
1.65E−03


LAMP1
0.97
5.72E−05
  1.09E+00
1.31E−02
1.40E−05
1.52
1.73E−03


PMM1
0.58
4.63E−03
  1.78E+00
1.60E−04
1.46E−05
2.07
1.78E−03


IL27RA
−1.08
1.27E−05
−6.05E−01
7.93E−02
1.56E−05
−1.29
1.90E−03


STOM
0.83
5.92E−02
  1.43E+00
1.69E−05
1.61E−05
1.74
1.93E−03


TUSC2
−0.02
9.49E−01
  1.55E+00
2.68E−06
1.64E−05
1.83
1.95E−03


SOCS3
0.77
1.61E−03
  2.35E+00
5.21E−04
1.68E−05
1.35
1.98E−03


SYNE2
0.46
3.44E−01
  2.11E+00
4.47E−06
1.72E−05
0.35
2.01E−03


TSPO
0.48
2.87E−06
−1.20E−16
1.00E+00
1.75E−05
0.48
2.03E−03


6430571L13RIK
−0.88
1.73E−02
−1.31E+00
5.67E−05
1.77E−05
−1.36
2.03E−03


CCDC85B
0.37
8.41E−02
  1.72E+00
1.41E−05
1.80E−05
1.12
2.05E−03


RAD23A
−0.82
8.25E−06
−1.07E+00
1.80E−01
1.97E−05
−0.94
2.22E−03


PLBD2
0.57
2.00E−02
  1.44E+00
5.74E−05
2.04E−05
1.74
2.26E−03


PTPN1
0.80
3.36E−06
−1.20E−16
1.00E+00
2.04E−05
0.79
2.26E−03


PERP
0.69
8.58E−03
  1.38E+00
1.36E−04
2.18E−05
2.20
2.39E−03


RPS13
−0.21
3.68E−06
−1.20E−16
1.00E+00
2.23E−05
−0.21
2.42E−03


ODC1
1.03
5.80E−06
−5.18E−01
4.48E−01
2.58E−05
0.89
2.78E−03


IL22

1.00E+00
  3.31E+00
2.59E−05
2.59E−05

2.78E−03


RPS26
−0.22
4.42E−06
−1.20E−16
1.00E+00
2.66E−05
−0.22
2.81E−03


TRP53I11
−0.44
4.95E−02
−1.51E+00
3.35E−05
2.67E−05
−1.73
2.81E−03


BLOC1S4
0.60
1.32E−01
  1.47E+00
1.50E−05
2.73E−05
1.51
2.86E−03


CFL1
0.26
4.65E−06
−1.20E−16
1.00E+00
2.79E−05
0.26
2.89E−03


SERBP1
0.36
5.21E−06
−1.20E−16
1.00E+00
3.11E−05
0.36
3.20E−03


MFHAS1
0.88
3.56E−05
  9.40E−01
5.66E−02
3.16E−05
1.11
3.22E−03


NOP9
0.71
1.41E−03
  1.34E+00
1.20E−03
3.22E−05
1.60
3.27E−03


IL18R1
0.90
2.67E−02
  1.27E+00
7.26E−05
3.27E−05
2.03
3.29E−03


STX6
0.71
9.73E−03
  1.62E+00
1.92E−04
3.37E−05
1.72
3.36E−03


CSGALNACT1
0.04
9.53E−01
  1.99E+00
5.75E−06
3.41E−05
0.82
3.37E−03


TPD52L2
0.67
1.07E−05
  1.42E+00
3.15E−01
3.73E−05
0.71
3.67E−03


PLAGL2
0.66
9.73E−06
  1.23E+00
3.79E−01
3.84E−05
0.69
3.72E−03


RACK1
−0.25
6.51E−06
−1.20E−16
1.00E+00
3.84E−05
−0.25
3.72E−03


KARS
−0.58
7.74E−06
−1.20E−16
1.00E+00
4.54E−05
−0.58
4.36E−03


RBM43
−0.65
4.35E−03
−1.10E+00
5.87E−04
4.66E−05
−1.67
4.44E−03


RPS10
−0.22
8.08E−06
−1.20E−16
1.00E+00
4.73E−05
−0.22
4.48E−03


SCAND1
0.44
8.89E−02
  1.33E+00
3.73E−05
4.77E−05
1.70
4.48E−03


PGS1
0.94
1.10E−05
  5.21E−01
4.56E−01
4.81E−05
1.06
4.48E−03


SERPINB5
0.73
1.04E−01
  1.35E+00
3.32E−05
4.85E−05
2.06
4.49E−03


YWHAH
0.47
8.68E−06
  5.59E−01
8.74E−01
5.00E−05
0.47
4.60E−03


H2−K1
−0.43
9.07E−06
−1.20E−16
1.00E+00
5.28E−05
−0.43
4.79E−03


RBM42
0.78
5.28E−05
  1.57E+00
6.67E−02
5.25E−05
1.01
4.79E−03


EIF4B
−0.43
9.16E−06
−1.20E−16
1.00E+00
5.33E−05
−0.43
4.80E−03


MTRF1L
0.69
3.64E−02
  1.44E+00
9.34E−05
5.43E−05
1.05
4.86E−03


IFNG
3.15
2.89E−03
  1.15E+00
1.12E−03
5.84E−05
2.17
5.19E−03


RBM3
−0.38
1.02E−05
−1.20E−16
1.00E+00
5.88E−05
−0.38
5.19E−03


EEF1A1
−0.27
1.05E−05
−1.20E−16
1.00E+00
6.06E−05
−0.27
5.27E−03


TRAPPC6B
1.14
3.41E−05
  5.74E−01
1.33E−01
6.02E−05
1.40
5.27E−03


EIF4A2
−0.51
4.59E−05
−1.98E+00
9.62E−02
6.19E−05
−0.62
5.35E−03


LIN7C
−0.84
7.57E−05
  8.60E−01
5.73E−02
6.52E−05
−0.23
5.60E−03


SDHD
−0.66
1.51E−05
  5.81E−01
6.10E−01
7.55E−05
−0.57
6.32E−03


TNP2
−0.73
5.20E−03
−1.14E+00
8.27E−04
7.53E−05
−1.89
6.32E−03


POLR2M
0.75
1.30E−05
  9.45E−02
9.63E−01
7.41E−05
0.74
6.32E−03


CCNB2
0.92
2.30E−04
−8.67E−01
1.98E−02
7.48E−05
−0.04
6.32E−03


RPGRIP1
−0.38
1.38E−01
−1.40E+00
4.40E−05
7.88E−05
−1.12
6.55E−03


FAM49B
0.67
1.80E−05
  4.80E−01
5.01E−01
8.09E−05
0.71
6.64E−03


GPR18
0.66
1.73E−02
  1.68E+00
2.83E−04
8.09E−05
1.88
6.64E−03


FURIN
0.99
1.27E−04
−1.88E+00
4.37E−02
8.50E−05
0.75
6.93E−03


ATG3
0.65
1.86E−04
  9.67E−01
2.98E−02
8.76E−05
1.32
6.99E−03


HIST1H2AH
1.65
1.56E−02
−2.18E+00
3.40E−04
8.79E−05
−0.39
6.99E−03


SLC15A3
1.10
7.46E−04
  1.01E+00
6.83E−03
8.75E−05
1.95
6.99E−03


DONSON
0.77
2.96E−02
  1.19E+00
1.87E−04
8.75E−05
1.48
6.99E−03


CD72
−3.12
4.55E−05
−7.32E−01
1.59E−01
9.07E−05
−0.39
7.17E−03


SLC30A9
0.80
7.38E−03
  1.11E+00
7.38E−04
9.29E−05
1.42
7.29E−03


THAP11
0.71
6.99E−03
  1.11E+00
7.82E−04
9.34E−05
1.79
7.29E−03


RGCC
0.87
3.67E−04
  1.33E+00
1.62E−02
9.73E−05
1.62
7.46E−03


ISG20
−0.65
2.10E−01
−1.57E+00
3.89E−05
9.64E−05
−1.69
7.46E−03


ETV6
−0.75
1.73E−05
  1.75E−01
9.31E−01
9.74E−05
−0.70
7.46E−03


WIPI2
0.41
3.60E−02
  1.92E+00
1.76E−04
9.78E−05
1.30
7.46E−03


ANP32A
0.71
6.21E−05
  9.90E−01
1.21E−01
9.92E−05
0.93
7.52E−03


CD81
0.66
2.23E−05
  9.84E−01
5.28E−01
1.02E−04
0.67
7.70E−03


RIPK2
0.78
1.51E−02
  1.18E+00
4.29E−04
1.06E−04
1.86
7.88E−03


UNC119B
0.54
1.47E−02
  2.06E+00
4.38E−04
1.05E−04
1.42
7.88E−03


ATP5G2
−0.33
1.91E−05
−1.20E−16
1.00E+00
1.08E−04
−0.33
7.97E−03


LATS1
−1.13
2.98E−05
  2.83E−01
3.75E−01
1.11E−04
−0.34
8.09E−03


RPL23
−0.20
1.98E−05
−1.20E−16
1.00E+00
1.11E−04
−0.20
8.09E−03


RPS16
−0.20
1.98E−05
−1.20E−16
1.00E+00
1.11E−04
−0.20
8.09E−03


RPS28
−0.24
1.99E−05
−1.20E−16
1.00E+00
1.12E−04
−0.24
8.09E−03


KHNYN
−0.98
1.30E−03
−9.04E−01
5.09E−03
1.13E−04
−1.25
8.11E−03


PAIP1
−0.64
7.65E−04
−1.33E+00
8.98E−03
1.14E−04
−0.91
8.19E−03


NMT1
−0.88
3.44E−05
−7.53E−01
3.43E−01
1.20E−04
−0.97
8.54E−03


CDKN1A
0.83
2.20E−05
−1.67E−01
8.66E−01
1.21E−04
0.81
8.58E−03


GAS2L1
0.94
3.38E−02
  1.34E+00
2.46E−04
1.27E−04
0.87
8.93E−03


SHROOM3
1.26
3.40E−03
  1.11E+00
2.23E−03
1.28E−04
0.75
8.94E−03


2310036022RIK
1.02
6.41E−05
  4.41E−01
1.82E−01
1.39E−04
1.03
9.65E−03


CAPZA2
0.39
2.50E−05
−1.20E−16
1.00E+00
1.39E−04
0.39
9.65E−03


IER2
0.81
9.37E−05
  9.22E−01
1.17E−01
1.42E−04
1.20
9.81E−03


ATXN2L
0.78
3.23E−05
  5.88E−01
5.49E−01
1.48E−04
0.80
1.02E−02


COX15
0.42
1.33E−01
−1.26E+00
9.04E−05
1.52E−04
−0.29
1.03E−02


PLEK
−0.05
8.72E−01
  1.48E+00
2.81E−05
1.53E−04
1.74
1.04E−02


ZDHHC7
1.07
9.05E−04
  8.42E−01
1.08E−02
1.57E−04
1.38
1.06E−02


TRIM27
0.82
7.52E−04
  1.07E+00
1.36E−02
1.63E−04
1.27
1.10E−02


RAC1
0.92
3.66E−05
  1.04E+00
5.84E−01
1.72E−04
0.93
1.15E−02


RAPH1
0.42
7.36E−02
  1.31E+00
1.72E−04
1.74E−04
0.98
1.15E−02


FBXO2
1.25
6.97E−03
  1.22E+00
1.53E−03
1.73E−04
1.02
1.15E−02


UBA5
1.56
4.10E−05
  2.17E−01
4.94E−01
1.76E−04
0.83
1.16E−02


FLOT2
0.77
3.31E−03
  1.26E+00
3.26E−03
1.77E−04
1.60
1.16E−02


ADIPOR1
0.88
3.72E−05
  4.14E−01
6.30E−01
1.80E−04
0.92
1.17E−02


LRRFIP2
0.91
9.21E−04
  8.00E−01
1.30E−02
1.88E−04
1.14
1.22E−02


DAXX
−0.07
7.11E−01
−3.18E+00
3.79E−05
1.92E−04
−0.63
1.24E−02


ASB2
−0.30
4.51E−01
−1.34E+00
5.49E−05
2.20E−04
−1.57
1.41E−02


SOX5
0.70
1.75E−02
  1.08E+00
8.53E−04
2.29E−04
1.02
1.46E−02


LGALS4
−1.04
3.16E−04
−6.23E−01
5.19E−02
2.30E−04
−0.88
1.46E−02


ACBD6
0.83
8.58E−05
  5.19E−01
2.62E−01
2.38E−04
1.09
1.51E−02


FBXL22
−2.22
4.69E−05
  1.21E−01
7.89E−01
2.44E−04
−0.24
1.53E−02


ARPC1B
0.29
4.51E−05
−1.20E−16
1.00E+00
2.43E−04
0.29
1.53E−02


MAPK6
0.75
4.44E−04
  1.66E+00
3.90E−02
2.49E−04
0.96
1.55E−02


PKIB
1.03
1.04E−01
  1.57E+00
1.98E−04
2.63E−04
0.56
1.63E−02


FZR1
0.61
1.38E−02
  1.39E+00
1.32E−03
2.78E−04
1.61
1.72E−02


PRKCQ
−0.40
8.76E−02
−1.95E+00
2.54E−04
2.89E−04
−1.41
1.77E−02


SOD1
−0.29
5.47E−05
−1.20E−16
1.00E+00
2.92E−04
−0.29
1.77E−02


ATP6V0B
0.62
3.02E−04
  1.49E+00
7.22E−02
2.90E−04
0.88
1.77E−02


UBASH3A
−0.68
1.93E−02
−1.06E+00
1.02E−03
2.93E−04
−1.59
1.77E−02


IL2RA
0.40
5.60E−05
−1.20E−16
1.00E+00
2.99E−04
0.40
1.79E−02


PGP
0.74
5.35E−04
  9.02E−01
3.94E−02
2.99E−04
1.47
1.79E−02


NRAS
0.47
5.75E−05
  4.70E−01
9.30E−01
3.05E−04
0.47
1.82E−02


SLAMF6
−2.48
2.26E−04
−6.96E−01
1.08E−01
3.06E−04
−0.78
1.82E−02


RAB3GAP1
−0.83
4.38E−04
−7.37E−01
5.15E−02
3.11E−04
−1.15
1.83E−02


BATF
0.71
1.25E−04
  9.24E−01
2.29E−01
3.10E−04
1.00
1.83E−02


D17H6S53E
−0.39
6.58E−02
−1.42E+00
3.54E−04
3.11E−04
−0.96
1.83E−02


PITHD1
0.71
5.27E−03
  1.07E+00
3.94E−03
3.19E−04
1.70
1.86E−02


CCR3

1.00E+00
  3.06E+00
3.30E−04
3.30E−04

1.92E−02


STAT5A
0.74
8.97E−05
  8.95E−01
4.22E−01
3.38E−04
0.84
1.95E−02


MLF2
0.54
7.43E−05
−4.14E−01
6.27E−01
3.47E−04
0.49
2.00E−02


ATP5E
−0.31
6.66E−05
−1.20E−16
1.00E+00
3.52E−04
−0.31
2.02E−02


MIDN
0.82
8.04E−05
  2.29E−01
5.75E−01
3.59E−04
0.74
2.05E−02


SLC39A8
0.17
5.62E−01
  1.29E+00
8.26E−05
3.64E−04
1.44
2.07E−02


RFNG
0.42
1.14E−01
  1.20E+00
2.73E−04
3.80E−04
1.53
2.15E−02


TMED2
0.40
7.41E−05
−1.20E−16
1.00E+00
3.89E−04
0.40
2.18E−02


ARID3A
0.76
2.26E−03
  7.98E−01
1.15E−02
3.89E−04
0.89
2.18E−02


GAK
0.56
7.57E−05
−1.20E−16
1.00E+00
3.97E−04
0.56
2.20E−02


TTC39C
0.86
1.60E−02
  1.02E+00
1.69E−03
3.96E−04
1.62
2.20E−02


VPS37A
0.74
3.73E−03
  1.04E+00
7.06E−03
3.96E−04
1.19
2.20E−02


DSTN
0.71
6.43E−04
  9.26E−01
4.52E−02
3.98E−04
1.34
2.20E−02


BEND4
0.56
2.03E−02
  1.11E+00
1.38E−03
4.07E−04
1.08
2.23E−02


CD3E
0.57
7.91E−05
−1.20E−16
1.00E+00
4.14E−04
0.57
2.26E−02


UPF3A
0.69
2.62E−02
  1.05E+00
1.11E−03
4.13E−04
1.31
2.26E−02


MGAT2
0.72
5.77E−03
  1.00E+00
4.87E−03
4.20E−04
1.46
2.28E−02


LGALS1
0.42
8.25E−05
−1.20E−16
1.00E+00
4.31E−04
0.42
2.33E−02


GATM
0.39
1.48E−01
  1.49E+00
2.53E−04
4.34E−04
1.80
2.34E−02


MDFIC
0.78
5.18E−04
  6.89E−01
6.54E−02
4.43E−04
1.07
2.37E−02


RPL31−PS12
−0.02
9.34E−01
−1.30E+00
8.68E−05
4.50E−04
−1.82
2.40E−02


H2−Q7
−0.60
3.03E−03
−2.58E+00
1.02E−02
4.54E−04
−0.93
2.41E−02


RNF115
0.87
5.29E−03
  9.11E−01
5.88E−03
4.61E−04
1.49
2.44E−02


FAM174A
0.17
4.67E−01
  1.27E+00
1.20E−04
4.70E−04
1.39
2.48E−02


CTBP1
0.91
1.57E−04
  3.53E−01
3.17E−01
4.80E−04
0.97
2.52E−02


ZBTB38
0.64
4.65E−02
  1.10E+00
7.69E−04
4.81E−04
1.28
2.52E−02


ZFP973
0.41
6.58E−02
−1.17E+00
5.67E−04
4.84E−04
−0.38
2.52E−02


1810026J23RIK
0.02
9.45E−01
  1.31E+00
9.47E−05
4.90E−04
1.26
2.54E−02


TDP2
0.72
1.50E−02
  1.00E+00
2.31E−03
5.00E−04
1.46
2.58E−02


RPL39
−0.20
9.89E−05
−1.20E−16
1.00E+00
5.11E−04
−0.20
2.63E−02


RAI14
−0.43
3.50E−01
  1.43E+00
1.60E−04
5.21E−04
0.60
2.67E−02


ADAMTSL4
−0.60
1.52E−01
−1.20E+00
3.06E−04
5.30E−04
−0.91
2.71E−02


ZFAND6
0.66
1.07E−03
  1.41E+00
3.66E−02
5.35E−04
1.05
2.71E−02


MCUR1
0.46
1.15E−01
  1.15E+00
3.88E−04
5.35E−04
0.95
2.71E−02


MYLK
0.16
8.03E−01
  1.92E+00
1.08E−04
5.39E−04
0.38
2.72E−02


ANKRD13C
1.07
1.97E−03
  7.22E−01
1.98E−02
5.52E−04
1.05
2.75E−02


IARS
−0.79
1.11E−04
  3.38E−01
7.91E−01
5.50E−04
−0.70
2.75E−02


GBP10
−0.45
2.53E−01
−1.18E+00
2.15E−04
5.52E−04
−1.49
2.75E−02


PSMD3
0.55
1.10E−04
−6.33E−02
9.04E−01
5.59E−04
0.55
2.78E−02


MIR684−2
−1.96
5.81E−02
−1.59E+00
7.60E−04
5.73E−04
−1.46
2.84E−02


ACLY
−0.55
1.12E−04
−1.20E−16
1.00E+00
5.75E−04
−0.55
2.84E−02


CRIP2
−0.25
5.85E−01
  1.46E+00
1.36E−04
5.96E−04
0.98
2.93E−02


FRMD6
−0.61
3.62E−02
  1.09E+00
1.23E−03
6.00E−04
0.62
2.93E−02


ST3GAL1
0.83
1.79E−03
  8.24E−01
2.45E−02
6.09E−04
1.22
2.97E−02


LYSMD2
1.26
1.44E−04
  1.87E−01
5.53E−01
6.12E−04
0.72
2.97E−02


PANK4
−0.96
3.79E−04
−4.76E−01
1.48E−01
6.35E−04
−0.96
3.06E−02


CACNB2
1.46
6.17E−03
  1.12E+00
7.16E−03
6.33E−04
0.41
3.06E−02


CDCA7
−0.42
7.05E−02
−1.81E+00
7.24E−04
6.43E−04
−1.16
3.09E−02


CRISPLD2
0.34
6.24E−01
  1.64E+00
1.45E−04
6.49E−04
0.69
3.10E−02


GM4951
−1.08
1.21E−01
−1.37E+00
4.67E−04
6.59E−04
−0.95
3.14E−02


CHST10
2.47
5.56E−03
  1.45E+00
8.48E−03
6.70E−04
0.52
3.18E−02


IFT57
0.71
1.37E−02
  9.23E−01
3.52E−03
6.76E−04
1.23
3.19E−02


PCBP3
−1.85
1.12E−03
−1.09E+00
4.59E−02
6.74E−04
−0.27
3.19E−02


GGA3
0.54
8.38E−02
−1.18E+00
6.74E−04
6.93E−04
−0.37
3.24E−02


TESC
0.79
1.22E−02
  9.32E−01
4.02E−03
6.90E−04
1.54
3.24E−02


EBF1
0.47
5.34E−02
  1.35E+00
1.01E−03
6.94E−04
1.37
3.24E−02


CTSD
0.63
5.01E−04
  1.87E+00
1.22E−01
7.10E−04
0.73
3.30E−02


ETNK1
−0.62
2.11E−03
−8.95E−01
2.54E−02
7.28E−04
−1.00
3.37E−02


CBLN3
0.43
5.60E−03
−8.11E−01
9.30E−03
7.32E−04
0.04
3.38E−02


NHLRC2
0.32
3.47E−01
  1.16E+00
2.34E−04
7.38E−04
1.14
3.39E−02


S100A11
0.76
1.44E−04
  2.05E−01
1.00E+00
7.40E−04
0.78
3.39E−02


DHX57
−1.00
2.05E−04
−2.35E−01
4.44E−01
7.57E−04
−0.59
3.46E−02


E030024N20RIK
−0.38
1.52E−04
−1.20E−16
1.00E+00
7.67E−04
−0.38
3.49E−02


NLRC5
−0.32
1.75E−01
−1.85E+00
4.08E−04
7.71E−04
−0.87
3.49E−02


DTX3L
−0.74
1.74E−04
−3.67E−01
6.39E−01
7.79E−04
−0.76
3.52E−02


EIF4G2
−0.55
1.55E−04
−1.20E−16
1.00E+00
7.83E−04
−0.55
3.52E−02


SLC25A39
0.53
1.74E−04
−2.55E−01
6.76E−01
7.99E−04
0.45
3.53E−02


ISCU
0.57
4.38E−03
  1.33E+00
1.31E−02
7.92E−04
1.37
3.53E−02


BACH2
0.73
6.50E−04
  9.31E−01
1.04E−01
7.95E−04
0.90
3.53E−02


MGLL
0.44
6.29E−02
  1.26E+00
1.01E−03
7.98E−04
1.48
3.53E−02


PTBP2
−1.13
7.27E−04
−5.25E−01
9.03E−02
7.90E−04
−0.85
3.53E−02


APLF
0.37
1.63E−01
−1.33E+00
4.54E−04
8.08E−04
−0.27
3.56E−02


ANXA3
0.60
7.99E−02
−1.14E+00
8.46E−04
8.23E−04
−1.13
3.61E−02


TNFRSF4
−0.45
1.63E−04
−1.20E−16
1.00E+00
8.20E−04
−0.45
3.61E−02


MXD4
3.36
9.34E−03
  1.96E+00
6.44E−03
8.34E−04
0.29
3.64E−02


ARHGDIB
−0.32
1.68E−04
−1.20E−16
1.00E+00
8.41E−04
−0.32
3.66E−02


HIST1H1E
0.70
3.16E−03
  8.23E−01
1.97E−02
8.46E−04
1.45
3.67E−02


DCTN4
0.65
5.94E−04
  1.88E+00
1.26E−01
8.54E−04
0.73
3.68E−02


KIF3A
−0.48
3.43E−02
−1.13E+00
1.90E−03
8.56E−04
−1.23
3.68E−02


GPM6B
−0.78
3.29E−02
−9.69E−01
1.97E−03
8.57E−04
−1.67
3.68E−02


DUSP3
0.69
3.01E−02
  1.02E+00
2.16E−03
8.64E−04
1.27
3.69E−02


RPL9
−0.18
1.73E−04
−1.20E−16
1.00E+00
8.67E−04
−0.18
3.70E−02


SEMA7A
0.59
1.32E−01
  1.12E+00
5.84E−04
8.71E−04
1.19
3.70E−02


INPP4B
−0.16
5.50E−01
−1.67E+00
2.14E−04
8.86E−04
−1.02
3.75E−02


GNAI2
0.56
2.24E−04
−5.96E−01
5.22E−01
8.99E−04
0.53
3.79E−02


TRIM25
−0.37
5.86E−02
−2.23E+00
1.26E−03
9.21E−04
−0.70
3.87E−02


PRG4
0.53
1.59E−01
−1.44E+00
5.39E−04
9.31E−04
−0.18
3.91E−02


H1F0
0.97
9.21E−04
  5.78E−01
8.52E−02
9.38E−04
1.19
3.92E−02


PKNOX1
−0.68
4.56E−02
  9.93E−01
1.63E−03
9.50E−04
0.58
3.95E−02


TRIP10
−0.86
2.25E−04
  1.95E−01
5.78E−01
9.51E−04
−0.37
3.95E−02


RNF10
0.82
2.43E−04
  3.56E−01
5.38E−01
9.84E−04
0.88
3.99E−02


HMGB1
−0.45
1.98E−04
−1.20E−16
1.00E+00
9.85E−04
−0.45
3.99E−02


LMNA
0.52
1.63E−01
  1.13E+00
5.57E−04
9.80E−04
1.75
3.99E−02


SOAT2
−0.63
2.91E−02
−1.26E+00
2.56E−03
9.80E−04
−0.94
3.99E−02


HMGN2
−0.73
2.35E−03
−1.27E+00
3.17E−02
9.72E−04
−0.99
3.99E−02


GM20939
−0.57
2.07E−02
−1.52E+00
3.51E−03
9.70E−04
−0.93
3.99E−02


MAX
0.69
2.32E−04
−3.12E−01
5.79E−01
9.79E−04
0.56
3.99E−02


CEBPD
2.35
2.74E−02
  1.87E+00
2.68E−03
9.68E−04
0.34
3.99E−02


ARHGAP18
−0.33
1.43E−01
−1.14E+00
6.32E−04
9.93E−04
−1.36
4.01E−02


THY1
0.58
2.06E−04
−1.20E−16
1.00E+00
1.02E−03
0.57
4.10E−02


CNN3
0.31
3.79E−02
  2.85E+00
2.12E−03
1.03E−03
0.87
4.14E−02


CPNE8
−0.36
4.91E−02
−1.29E+00
1.68E−03
1.04E−03
−0.96
4.16E−02


HMGCR
−0.83
2.38E−04
−3.12E−01
6.48E−01
1.05E−03
−0.86
4.18E−02


ETS1
−0.74
2.13E−04
−1.20E−16
1.00E+00
1.05E−03
−0.74
4.18E−02


MRPL23
−0.50
4.25E−04
  1.07E+00
2.54E−01
1.05E−03
−0.42
4.18E−02


TEFM
−1.01
5.57E−04
−4.25E−01
1.83E−01
1.06E−03
−0.79
4.21E−02


RPLP1
−0.19
2.20E−04
−1.20E−16
1.00E+00
1.08E−03
−0.19
4.27E−02


WASF2
0.52
2.22E−04
−1.20E−16
1.00E+00
1.09E−03
0.52
4.29E−02


NME2
0.34
2.70E−04
  9.82E−01
5.46E−01
1.10E−03
0.36
4.30E−02


UBXN2A
1.06
2.55E−04
  1.70E−01
6.21E−01
1.10E−03
0.87
4.30E−02


MYO10
0.62
7.30E−03
  1.14E+00
1.19E−02
1.15E−03
0.93
4.49E−02


GNPDA2
0.68
4.91E−03
  8.88E−01
1.79E−02
1.16E−03
1.50
4.49E−02


PHF2
0.35
7.46E−02
−1.01E+00
1.30E−03
1.16E−03
−0.22
4.49E−02


KDSR
1.07
2.77E−04
−2.18E−01
5.99E−01
1.17E−03
0.77
4.50E−02


RFX3
1.39
2.26E−02
−1.18E+00
3.96E−03
1.17E−03
−0.10
4.50E−02


ILTIFB

1.00E+00
  2.89E+00
1.17E−03
1.17E−03

4.50E−02


PNO1
0.60
3.60E−03
  1.59E+00
2.54E−02
1.18E−03
1.13
4.53E−02


TIAL1
−0.40
1.33E−01
−1.10E+00
8.10E−04
1.19E−03
−0.82
4.53E−02


MYC
0.79
3.07E−04
−3.76E−01
5.24E−01
1.21E−03
0.61
4.61E−02


RNF214
−0.85
2.53E−04
  4.19E−02
9.24E−01
1.23E−03
−0.53
4.66E−02


SLC25A33
1.62
7.18E−04
  5.45E−01
1.66E−01
1.26E−03
0.55
4.75E−02


DCLK1
0.71
1.81E−02
  9.19E−01
5.40E−03
1.28E−03
1.08
4.82E−02


FUNDC2
−0.46
3.04E−02
−1.03E+00
3.31E−03
1.29E−03
−1.13
4.83E−02


FAU
−0.19
2.68E−04
−1.20E−16
1.00E+00
1.31E−03
−0.19
4.89E−02


RAB24
−0.09
7.96E−01
  1.21E+00
2.79E−04
1.31E−03
1.01
4.89E−02


DGAT2
0.90
4.85E−01
−2.43E+00
3.50E−04
1.32E−03
−0.41
4.90E−02


UBE2D3
0.36
5.33E−04
  1.43E+00
2.68E−01
1.34E−03
0.40
4.99E−02


SRSF11
0.59
5.36E−04
  1.43E+00
2.68E−01
1.35E−03
0.63
5.00E−02


SYVN1
0.62
5.18E−03
  9.73E−01
2.04E−02
1.37E−03
0.98
5.04E−02


H2-T22
−0.61
2.81E−04
−1.20E−16
1.00E+00
1.36E−03
−0.61
5.04E−02


IL18BP
−1.87
3.37E−04
−2.30E−01
5.69E−01
1.38E−03
−0.45
5.05E−02


IFT46
0.93
8.85E−04
  5.26E−01
1.47E−01
1.39E−03
1.04
5.08E−02


ADAM10
−0.64
1.99E−03
−9.08E−01
5.96E−02
1.43E−03
−0.97
5.21E−02


SLC43A1
1.42
2.36E−01
−2.36E+00
6.39E−04
1.45E−03
−0.32
5.30E−02


DDB2
−1.01
4.65E−03
−7.13E−01
2.48E−02
1.47E−03
−1.26
5.34E−02


H2-Q9
−0.71
2.65E−02
−9.25E−01
4.49E−03
1.50E−03
−1.68
5.44E−02


SSBP4
0.67
1.01E−02
  8.65E−01
1.17E−02
1.52E−03
1.36
5.50E−02


ULBP1
0.16
7.02E−01
  1.27E+00
3.48E−04
1.55E−03
1.14
5.56E−02


MICU2
0.83
7.01E−04
  4.76E−01
2.27E−01
1.55E−03
1.10
5.56E−02


GFPT2
0.57
1.79E−01
  1.23E+00
8.55E−04
1.56E−03
0.92
5.60E−02


ROGDI
0.19
6.48E−01
−1.19E+00
3.65E−04
1.57E−03
−1.12
5.62E−02


HIST2H3B
1.06
5.77E−04
  3.80E−01
3.05E−01
1.58E−03
0.62
5.62E−02


IRGM1
−0.48
7.39E−02
−1.47E+00
1.86E−03
1.60E−03
−1.20
5.64E−02


GLTSCR2
−0.29
3.34E−04
−1.20E−16
1.00E+00
1.61E−03
−0.29
5.64E−02


CCR8
−0.78
6.94E−03
−8.18E−01
1.81E−02
1.60E−03
−1.57
5.64E−02


IL16
−0.60
2.13E−02
−9.43E−01
5.94E−03
1.61E−03
−1.27
5.64E−02


APOPT1
−0.81
1.00E−03
−6.98E−01
1.52E−01
1.60E−03
−1.07
5.64E−02


FLOT1
0.58
4.20E−03
  1.32E+00
3.10E−02
1.62E−03
1.13
5.65E−02


ESYT1
0.57
3.98E−03
  1.47E+00
3.26E−02
1.61E−03
0.95
5.65E−02


ATP6V1H
−0.50
3.31E−02
−9.79E−01
3.94E−03
1.62E−03
−1.50
5.65E−02


SEMA4F
0.53
9.72E−02
  1.05E+00
1.50E−03
1.64E−03
1.52
5.69E−02


TMEM50A
0.38
3.42E−04
−1.20E−16
1.00E+00
1.64E−03
0.38
5.69E−02


AUP1
−0.41
3.45E−04
−1.20E−16
1.00E+00
1.65E−03
−0.41
5.72E−02


ADAM28
0.41
4.34E−03
  6.73E−01
3.13E−02
1.68E−03
0.34
5.80E−02
















TABLE 1B







Th1 KO GFP+ vs GFP−














Gene
coefC
pvalC
coefD
pvalD
pvalH
logFC
FDR

















IL23R
1.17
1.84E−02
  3.63E+00
3.38E−20
2.45E−20
3.97
3.17E−16


EGFP_IRES_IL23R
0.75
2.22E−01
  2.77E+00
5.60E−13
2.44E−12
3.48
1.58E−08


GZMB
−1.78
1.06E−03
−1.69E+00
1.27E−06
3.77E−08
−3.93
1.50E−04


CHCHD10
−1.17
1.68E−08
−1.31E+00
1.64E−01
4.64E−08
−1.33
1.50E−04


ARPC3
0.96
1.19E−07
  1.73E+00
2.91E−02
7.56E−08
1.32
1.96E−04


TPT1
−0.51
2.53E−08
−3.03E−17
1.00E+00
1.82E−07
−0.51
3.94E−04


TIMP1
0.80
1.14E−01
  1.86E+00
1.08E−07
2.13E−07
3.64
3.94E−04


FAM162A
0.93
1.25E−07
  1.04E+00
4.91E−01
6.77E−07
0.95
1.10E−03


SMOX
1.10
7.85E−06
2.52E+00
1.22E−02
1.99E−06
1.37
2.87E−03


GM8096

1.00E+00
−3.73E+00
3.81E−06
3.81E−06

4.49E−03


ANP32B
−1.04
8.44E−06
−1.55E+00
2.26E−02
3.67E−06
−1.17
4.49E−03


S100A10
0.73
9.67E−07
−3.03E−17
1.00E+00
6.17E−06
0.73
6.66E−03


PHF11C
−1.84
9.44E−05
−1.16E+00
3.84E−03
7.49E−06
−1.16
7.42E−03


IRF7
−0.62
4.18E−02
−1.51E+00
1.10E−05
8.01E−06
−2.17
7.42E−03


SPHK1
−1.19
2.91E−01
  2.67E+00
2.71E−06
9.50E−06
1.22
8.06E−03


TNC
−0.49
5.40E−02
  1.66E+00
1.10E−05
9.94E−06
0.29
8.06E−03


RPS6KC1
−1.07
6.49E−02
  1.69E+00
1.06E−05
1.12E−05
0.97
8.52E−03


PRDX2
0.65
2.69E−06
−3.03E−17
1.00E+00
1.65E−05
0.65
9.37E−03


TNFRSF8
0.75
2.12E−02
  1.60E+00
4.38E−05
1.66E−05
1.92
9.37E−03


EBF1
0.34
3.16E−01
  1.66E+00
4.39E−06
1.60E−05
1.57
9.37E−03


BHLHE40
0.99
4.08E−06
  1.45E+00
3.30E−01
1.53E−05
1.02
9.37E−03


ATP6V0D2
1.48
2.44E−03
  1.24E+00
3.18E−04
1.55E−05
2.42
9.37E−03


H2−Q10
0.99
9.72E−03
  1.53E+00
8.35E−05
1.54E−05
2.35
9.37E−03


INSL5
3.64
3.57E−03
  2.52E+00
2.57E−04
1.80E−05
0.92
9.72E−03


IFITM2
0.84
2.15E−05
  1.48E+00
7.92E−02
2.58E−05
1.12
1.34E−02


SERPINF1
1.36
3.38E−05
  8.46E−01
7.16E−02
3.65E−05
1.79
1.82E−02


S1PR1
1.10
9.87E−05
  1.25E+00
2.36E−02
3.93E−05
1.44
1.82E−02


P4HA2
1.14
3.09E−03
  1.18E+00
7.20E−04
4.12E−05
1.96
1.82E−02


ASS1
−0.95
1.11E−04
−1.05E+00
2.02E−02
3.84E−05
−1.61
1.82E−02


AP1B1
0.39
1.56E−01
  2.70E+00
2.05E−05
4.21E−05
1.19
1.82E−02


PDCD1
0.63
6.70E−02
  1.52E+00
4.38E−05
4.41E−05
2.17
1.82E−02


RPSA
−0.31
7.66E−06
−3.03E−17
1.00E+00
4.49E−05
−0.31
1.82E−02


AW554918
−2.25
1.02E−05
  8.16E−02
8.82E−01
5.86E−05
−0.37
2.23E−02


KCTD11
0.08
9.12E−01
  1.84E+00
1.01E−05
5.79E−05
1.24
2.23E−02


MGARP
0.44
9.71E−02
  1.70E+00
4.97E−05
6.73E−05
2.03
2.42E−02


AHNAK
1.34
2.86E−05
  1.21E+00
1.86E−01
6.58E−05
1.40
2.42E−02


ITFG2
−1.36
1.07E−04
−7.36E−01
4.28E−02
7.06E−05
−0.97
2.47E−02


SLC7A14
−0.44
1.89E−04
−1.90E+00
2.43E−02
7.44E−05
−0.48
2.54E−02


CD200
1.05
4.03E−04
  2.51E+00
1.13E−02
7.74E−05
1.24
2.57E−02


NCF4
−0.45
1.09E−01
−1.62E+00
5.74E−05
8.44E−05
−1.74
2.74E−02


GARS
−0.71
5.86E−05
−1.37E+00
1.34E−01
1.01E−04
−0.75
2.87E−02


LAMB3
−1.61
1.67E−01
−2.77E+00
5.05E−05
1.04E−04
−0.48
2.87E−02


VHL
−0.32
3.76E−01
  1.44E+00
2.77E−05
1.03E−04
1.37
2.87E−02


CCDC71L
0.43
4.05E−01
  1.61E+00
2.58E−05
1.01E−04
1.12
2.87E−02


ARHGEF1
−0.82
1.82E−05
  3.31E−01
7.33E−01
9.67E−05
−0.75
2.87E−02


AMDHD1

1.00E+00
−3.43E+00
9.86E−05
9.86E−05

2.87E−02


LUM
1.22
5.18E−01
  2.17E+00
2.18E−05
9.89E−05
1.56
2.87E−02


CCDC102A

1.00E+00
  3.16E+00
1.22E−04
1.22E−04

3.24E−02


DOCK8
−1.05
4.53E−05
  4.39E−01
2.46E−01
1.25E−04
−0.52
3.24E−02


RC3H1
−0.91
4.24E−04
−8.27E−01
1.81E−02
1.22E−04
−1.02
3.24E−02


HVCN1
0.52
6.37E−02
  1.43E+00
1.57E−04
1.42E−04
1.88
3.60E−02


RABGAP1
1.46
5.17E−04
  7.96E−01
1.98E−02
1.60E−04
1.14
3.98E−02


RORA
0.14
6.69E−01
  1.46E+00
3.27E−05
1.64E−04
1.07
4.01E−02


RAC1
−1.00
1.08E−04
−1.94E+00
1.26E−01
1.72E−04
−1.03
4.05E−02


IZUMO1R
−0.89
2.76E−03
−1.02E+00
3.72E−03
1.69E−04
−1.97
4.05E−02


SPTAN1
−1.12
4.17E−05
  2.41E−01
5.78E−01
1.93E−04
−0.77
4.41E−02


CD44
0.18
5.40E−01
  1.82E+00
4.34E−05
1.94E−04
1.36
4.41E−02


RNH1
0.67
4.22E−05
  8.23E−01
7.11E−01
2.13E−04
0.68
4.74E−02


MPHOSPH6
0.84
2.64E−04
−1.07E+00
5.88E−02
2.16E−04
0.63
4.74E−02


SAA4
0.15
4.53E−01
−1.68E+00
5.84E−05
2.34E−04
−0.20
4.97E−02


SLC15A3
0.98
2.93E−02
  1.24E+00
5.32E−04
2.31E−04
2.03
4.97E−02


AZIN2
−2.18
6.54E−05
  4.58E−01
3.86E−01
2.38E−04
−0.12
4.97E−02


GINM1
0.08
6.96E−01
  1.81E+00
4.94E−05
2.45E−04
1.43
5.05E−02


SERPINA3F
−3.97
5.18E−04
−1.37E+00
3.34E−02
2.52E−04
−0.69
5.06E−02


MIR703
0.17
2.73E−01
−1.55E+00
8.91E−05
2.54E−04
−2.61
5.06E−02


TESC
−0.89
1.40E−03
−8.94E−01
1.27E−02
2.72E−04
−1.70
5.16E−02


IER2
−0.98
8.39E−05
−5.54E−01
3.21E−01
2.67E−04
−1.06
5.16E−02


HMGN2
−0.63
1.38E−02
−1.49E+00
1.32E−03
2.79E−04
−1.08
5.16E−02


RNASEK
0.27
2.40E−01
  3.28E+00
1.02E−04
2.64E−04
1.09
5.16E−02


SLC7A5
−0.93
3.83E−03
−1.08E+00
4.64E−03
2.78E−04
−1.24
5.16E−02


PGAM1
0.66
5.65E−05
  5.86E−01
8.08E−01
2.92E−04
0.67
5.19E−02


MTF2
−0.31
3.26E−01
−1.57E+00
9.07E−05
2.91E−04
−1.24
5.19E−02


YKT6
−0.73
1.43E−03
  1.07E+00
1.32E−02
2.87E−04
−0.06
5.19E−02


INPP5B
0.94
8.05E−05
  4.90E−01
4.27E−01
3.07E−04
1.03
5.29E−02


ARF6
−0.95
2.72E−04
−8.36E−01
8.95E−02
3.13E−04
−1.05
5.29E−02


CDT1
−0.93
5.72E−04
−8.47E−01
3.73E−02
3.03E−04
−1.52
5.29E−02


TRIM24
−1.17
3.45E−03
−9.70E−01
5.92E−03
3.14E−04
−0.96
5.29E−02


CAMK2B

1.00E+00
  3.62E+00
3.37E−04
3.37E−04

5.60E−02


ZC3H12C
−1.13
1.68E−01
  2.20E+00
1.77E−04
3.42E−04
0.41
5.61E−02


GABARAPL1
0.41
9.16E−02
  3.08E+00
3.13E−04
3.64E−04
0.99
5.77E−02


BNIP3
0.32
2.23E−01
  2.05E+00
1.48E−04
3.57E−04
1.66
5.77E−02


TMBIM4
0.06
7.87E−01
  3.26E+00
7.20E−05
3.65E−04
1.01
5.77E−02


ETV5
0.23
5.98E−01
  1.39E+00
8.49E−05
3.85E−04
1.61
6.01E−02


SERF1
0.86
4.65E−04
  6.83E−01
6.59E−02
4.03E−04
1.39
6.07E−02


TRAF3IP3
−0.43
9.12E−02
−2.00E+00
3.47E−04
3.99E−04
−1.18
6.07E−02


KHDRBS1
−0.88
2.32E−04
−7.20E−01
1.46E−01
3.96E−04
−1.01
6.07E−02


GDF3

1.00E+00
−3.20E+00
4.08E−04
4.08E−04

6.08E−02


SLC13A3
0.92
3.81E−01
  1.99E+00
1.19E−04
4.16E−04
0.78
6.13E−02


ISG20
−0.74
1.06E−01
−1.37E+00
3.31E−04
4.30E−04
−1.74
6.27E−02


PHPT1
−0.18
5.04E−01
−1.62E+00
1.09E−04
4.47E−04
−1.42
6.43E−02


SLC17A9
0.77
8.71E−03
  1.48E+00
3.63E−03
4.66E−04
1.29
6.64E−02


MT1
0.89
3.74E−04
  1.16E+00
1.04E−01
4.77E−04
1.12
6.72E−02


SYNGAP1
−0.49
3.12E−01
  1.46E+00
1.60E−04
4.83E−04
0.48
6.74E−02


CSNK1G2
−0.99
4.37E−04
  5.87E−01
9.77E−02
5.24E−04
−0.11
7.15E−02


PRMT5
−0.83
1.02E−03
−9.03E−01
3.76E−02
5.24E−04
−1.18
7.15E−02


SOX5
0.67
3.12E−02
  1.11E+00
1.24E−03
5.35E−04
1.10
7.22E−02


CYBRD1
−0.24
3.12E−02
−1.24E+00
1.36E−03
5.81E−04
−0.35
7.68E−02


CALM2
0.52
1.45E−04
  1.10E+00
4.89E−01
5.78E−04
0.54
7.68E−02


TMEM265
0.09
8.93E−01
  1.77E+00
1.18E−04
5.99E−04
0.82
7.69E−02


GRINA
−0.82
1.71E−04
−4.37E−01
3.90E−01
5.92E−04
−0.94
7.69E−02


NUDCD1
1.23
4.20E−04
−5.67E−01
1.21E−01
5.97E−04
0.53
7.69E−02


PKIB
0.32
5.35E−01
  1.58E+00
1.55E−04
6.46E−04
0.92
8.21E−02


ITGB7
−0.66
9.97E−03
−1.55E+00
4.82E−03
6.80E−04
−1.27
8.45E−02


EDA2R

1.00E+00
  3.08E+00
6.74E−04
6.74E−04

8.45E−02


SLFN1
−0.27
3.60E−01
−1.59E+00
2.10E−04
6.85E−04
−1.41
8.45E−02


USP20
−1.25
1.89E−03
  8.15E−01
2.71E−02
6.95E−04
0.33
8.46E−02


PERP
0.75
1.25E−02
  1.09E+00
4.00E−03
7.05E−04
1.81
8.46E−02


SLC4A7
0.97
7.26E−04
  8.29E−01
7.90E−02
7.08E−04
1.19
8.46E−02


MYLK
0.61
4.30E−01
  1.70E+00
1.96E−04
7.11E−04
0.58
8.46E−02


GABARAP
0.62
1.44E−04
  5.59E−01
8.83E−01
7.20E−04
0.62
8.48E−02


PADI2
−0.20
4.73E−01
−1.53E+00
1.93E−04
7.41E−04
−0.62
8.65E−02


CD74
1.23
3.42E−03
  8.19E−01
1.60E−02
7.60E−04
1.64
8.80E−02


ZFP420

1.00E+00
−3.16E+00
7.87E−04
7.87E−04

8.95E−02


AKR1B8
0.31
2.95E−01
  1.28E+00
2.78E−04
7.81E−04
1.89
8.95E−02


RPL30
−0.30
1.59E−04
−3.03E−17
1.00E+00
8.01E−04
−0.30
9.03E−02


SHMT2
−0.78
3.82E−03
−1.31E+00
1.61E−02
8.44E−04
−0.97
9.37E−02


RAD23B
−0.61
2.03E−03
−9.57E−01
3.29E−02
8.80E−04
−0.80
9.37E−02


NOL7
−0.70
5.69E−04
−9.39E−01
1.39E−01
8.81E−04
−0.81
9.37E−02


JAK2
−0.89
3.74E−03
  8.62E−01
1.68E−02
8.60E−04
0.04
9.37E−02


CHD7
−0.77
1.74E−04
  4.52E−02
1.00E+00
8.79E−04
−0.76
9.37E−02


AKNA
−0.73
6.84E−04
−1.18E+00
1.07E−01
8.53E−04
−0.83
9.37E−02


MMP11
1.03
3.94E−01
−2.32E+00
2.57E−04
8.72E−04
−0.45
9.37E−02


LAMP1
−1.10
2.19E−04
−2.71E−01
5.41E−01
8.98E−04
−1.12
9.39E−02


TRIB3
−1.58
1.90E−03
−7.58E−01
3.61E−02
8.94E−04
−1.43
9.39E−02


SGK1
2.86
3.53E−02
−1.63E+00
2.06E−03
9.45E−04
−0.30
9.73E−02


SPIRE1
0.38
4.69E−01
  1.47E+00
2.50E−04
9.41E−04
0.92
9.73E−02


CLEC2I
−1.41
1.96E−04
  7.37E−02
8.33E−01
9.54E−04
−0.69
9.74E−02


ZFP109
0.12
9.13E−01
−2.22E+00
2.00E−04
9.86E−04
−0.56
9.91E−02


MARK4
−1.43
4.30E−04
  4.72E−01
2.28E−01
9.82E−04
−0.07
9.91E−02
















TABLE 1C







Th1 Combined Model














Gene
coefC
pvalC
coefD
pvalD
pvalH
logFC
FDR

















RPS2
1.32
4.71E−18
  2.12E−16
1.00E+00
5.17E−17
1.32
3.66E−14


ANP32B
2.23
1.17E−14
−4.90E−01
6.02E−01
1.00E−13
2.13
3.54E−11


1110008F13RIK
2.33
3.24E−09
  1.51E+00
4.38E−04
5.09E−11
3.23
1.20E−08


RNF187
2.11
2.26E−09
  2.21E+00
4.97E−03
3.37E−10
2.69
5.96E−08


H2-T23
−1.06
5.68E−11
  2.12E−16
1.00E+00
4.77E−10
−1.06
6.74E−08


LSM4
1.53
1.33E−10
  1.47E+00
2.88E−01
6.26E−10
1.59
7.37E−08


LAMP1
2.08
4.71E−09
  1.06E+00
6.44E−02
6.42E−09
2.38
6.48E−07


LARS2
0.83
9.96E−10
  2.12E−16
1.00E+00
7.82E−09
0.83
6.91E−07


RAC1
1.85
4.53E−09
  1.91E+00
1.30E−01
1.09E−08
1.88
6.99E−07


IER2
1.72
1.72E−08
  1.58E+00
2.61E−02
1.05E−08
2.19
6.99E−07


TESC
1.81
4.78E−06
  1.75E+00
6.04E−05
9.17E−09
2.96
6.99E−07


PELI1
1.83
1.25E−07
  2.10E+00
5.89E−03
1.92E−08
2.22
1.13E−06


VAPA
1.66
1.43E−08
  1.79E+00
1.61E−01
3.91E−08
1.78
2.13E−06


RBMS1
1.18
9.16E−04
  2.46E+00
5.99E−06
1.46E−07
2.64
6.44E−06


RN7S1
0.57
3.98E−02
  2.26E+00
1.71E−07
1.40E−07
2.08
6.44E−06


RN7S2
0.57
3.98E−02
  2.26E+00
1.71E−07
1.40E−07
2.08
6.44E−06


EIF3F
0.98
3.35E−08
  2.12E−16
1.00E+00
2.39E−07
0.98
9.94E−06


PPP4C
1.29
6.66E−07
  2.10E+00
7.73E−02
9.05E−07
1.47
3.55E−05


LRP10
1.09
6.44E−04
  3.07E+00
8.61E−05
1.33E−06
1.82
4.94E−05


TMEM30A
1.11
1.06E−04
  3.43E+00
7.12E−04
1.78E−06
1.55
5.76E−05


NOL7
1.42
5.48E−07
  1.08E+00
2.14E−01
1.65E−06
1.52
5.76E−05


CLASP2
1.88
1.33E−06
  1.48E+00
7.94E−02
1.79E−06
2.00
5.76E−05


TMEM160
1.36
1.86E−05
  1.45E+00
5.29E−03
2.14E−06
2.12
6.58E−05


2310036022RIK
1.66
9.17E−06
  1.06E+00
1.19E−02
2.25E−06
2.09
6.63E−05


FAM49B
1.22
6.37E−07
  5.76E−01
4.62E−01
3.15E−06
1.25
8.90E−05


ARF6
1.60
1.04E−06
  7.63E−01
2.44E−01
3.37E−06
1.63
9.17E−05


UCK2
1.47
2.84E−06
  1.59E+00
7.81E−02
3.68E−06
1.69
9.63E−05


KHDRBS1
1.31
3.06E−06
  1.16E+00
7.71E−02
3.91E−06
1.59
9.87E−05


TMEM161B
−2.04
1.88E−05
−1.11E+00
1.46E−02
5.38E−06
−0.98
1.31E−04


NUBP1
1.36
2.51E−06
  7.50E−01
1.55E−01
5.61E−06
1.70
1.32E−04


UTP18
2.04
2.58E−06
  5.60E−01
2.04E−01
7.07E−06
1.84
1.61E−04


ESYT1
1.12
5.72E−06
  1.44E+00
1.25E−01
1.05E−05
1.32
2.31E−04


ENSA
−1.29
2.71E−04
−1.59E+00
1.98E−03
1.10E−05
−1.88
2.31E−04


STX6
1.27
3.60E−04
  1.78E+00
1.50E−03
1.11E−05
2.12
2.31E−04


RALA
0.68
6.00E−03
  2.51E+00
1.16E−04
1.37E−05
1.68
2.76E−04


PRKCH
1.27
1.09E−05
  1.18E+00
9.69E−02
1.59E−05
1.61
3.12E−04


CBX3
−0.76
2.96E−06
  2.12E−16
1.00E+00
1.81E−05
−0.76
3.46E−04


NDFIP2
0.01
9.72E−01
  1.98E+00
4.48E−06
2.69E−05
2.05
5.00E−04


PANX1
0.81
4.76E−02
  1.74E+00
3.85E−05
2.94E−05
2.42
5.26E−04


PRRC2A
0.88
5.23E−06
  7.78E−01
7.56E−01
2.97E−05
0.88
5.26E−04


PHF20L1
0.91
8.52E−03
  1.73E+00
2.15E−04
3.33E−05
1.52
5.75E−04


ACBD6
0.93
8.77E−04
  1.72E+00
2.18E−03
3.60E−05
2.16
6.05E−04


RBM42
1.20
2.54E−05
  1.47E+00
1.07E−01
3.85E−05
1.41
6.34E−04


ITSN2
1.76
6.90E−06
  6.62E−02
8.74E−01
4.01E−05
1.41
6.45E−04


EIF4A2
−0.85
2.00E−05
−2.05E+00
1.61E−01
4.20E−05
−0.97
6.59E−04


OPTN
2.39
1.15E−04
  1.19E+00
2.29E−02
4.43E−05
1.31
6.81E−04


RBM17
1.01
1.47E−05
  1.50E+00
2.76E−01
4.63E−05
1.02
6.96E−04


OST4
−1.17
1.64E−05
−1.21E+00
2.75E−01
5.11E−05
−1.30
7.53E−04


NOP9
0.55
8.29E−02
  2.08E+00
5.06E−05
6.03E−05
2.00
8.53E−04


UBA5
2.14
2.02E−05
  4.70E−01
2.58E−01
5.98E−05
1.37
8.53E−04


CLPTM1
1.25
2.83E−04
  1.24E+00
1.31E−02
6.33E−05
1.80
8.77E−04


GPSM2
2.50
2.30E−04
  1.40E+00
1.75E−02
6.72E−05
1.37
9.13E−04


BLOC1S4
1.02
5.50E−02
  1.78E+00
8.84E−05
7.29E−05
2.13
9.58E−04


RPL10A
−0.33
1.37E−05
  2.12E−16
1.00E+00
7.82E−05
−0.33
9.58E−04


WDR70
1.95
4.88E−05
  6.94E−01
1.11E−01
7.34E−05
1.79
9.58E−04


RPL9
−0.29
1.38E−05
  2.12E−16
1.00E+00
7.86E−05
−0.29
9.58E−04


THY1
0.93
1.43E−05
  7.57E−01
7.48E−01
7.77E−05
0.95
9.58E−04


PGS1
1.29
3.68E−05
  9.61E−01
1.67E−01
7.70E−05
1.52
9.58E−04


D030056L22RIK
1.71
1.75E−02
  1.75E+00
2.87E−04
8.29E−05
2.06
9.77E−04


CFL1
0.38
1.45E−05
  2.00E−01
1.00E+00
8.25E−05
0.38
9.77E−04


AMDHD1

1.00E+00
  3.44E+00
8.76E−05
8.76E−05

1.01E−03


DUSP2
1.36
3.83E−03
  1.57E+00
1.56E−03
1.02E−04
2.46
1.17E−03


ZFAND5
1.23
8.17E−04
  1.12E+00
9.07E−03
1.23E−04
1.43
1.36E−03


POLR2M
1.08
3.84E−05
  8.14E−01
3.03E−01
1.23E−04
1.26
1.36E−03


ZFP78
−5.85
5.20E−05
−1.19E+00
2.07E−01
1.26E−04
−0.24
1.37E−03


RPL39
−0.31
2.47E−05
  2.12E−16
1.00E+00
1.37E−04
−0.31
1.47E−03


ANKRD49
1.15
5.68E−04
−1.02E+00
1.85E−02
1.64E−04
−0.40
1.73E−03


LRP12
−2.63
3.38E−05
  1.45E−01
7.80E−01
1.78E−04
−0.17
1.85E−03


TSEN34
0.98
1.74E−02
  1.42E+00
6.80E−04
1.85E−04
2.09
1.86E−03


ZBTB38
1.35
6.47E−03
  1.38E+00
1.74E−03
1.82E−04
1.90
1.86E−03


ATXN2L
1.05
6.53E−05
  1.10E+00
2.81E−01
1.93E−04
1.10
1.90E−03


TPR
0.93
3.75E−05
  4.02E−01
7.25E−01
1.92E−04
0.95
1.90E−03


MGAT2
0.97
9.70E−03
  1.50E+00
1.28E−03
1.97E−04
2.07
1.91E−03


CD3E
0.91
3.71E−05
  3.72E−02
1.00E+00
2.02E−04
0.91
1.93E−03


MAP3K1
−1.02
1.17E−04
−1.20E+00
1.51E−01
2.13E−04
−1.12
2.01E−03


TMEM55B
1.59
6.60E−04
  9.73E−01
2.38E−02
2.36E−04
1.45
2.04E−03


NOMO1
1.01
1.25E−03
  1.55E+00
1.24E−02
2.41E−04
1.59
2.04E−03


RPS6KC1
0.76
2.02E−01
−1.74E+00
9.89E−05
2.27E−04
−0.99
2.04E−03


FAHD2A
−1.11
1.15E−02
−1.40E+00
1.36E−03
2.43E−04
−2.02
2.04E−03


SERBP1
0.49
4.06E−05
  2.12E−16
1.00E+00
2.20E−04
0.49
2.04E−03


CYB5R4
1.21
4.50E−03
  1.22E+00
3.36E−03
2.40E−04
1.86
2.04E−03


SCAND1
0.49
1.66E−01
  1.66E+00
1.19E−04
2.32E−04
1.83
2.04E−03


EIF4B
−0.69
4.52E−05
  3.61E−01
8.89E−01
2.42E−04
−0.68
2.04E−03


EMC7
0.51
5.74E−03
  2.99E+00
2.65E−03
2.41E−04
1.09
2.04E−03


SIRT1
−2.52
6.79E−05
  4.37E−01
4.03E−01
2.52E−04
−0.18
2.10E−03


DUS2
1.61
3.53E−04
  8.10E−01
5.31E−02
2.61E−04
1.72
2.14E−03


UBE2D3
0.57
5.48E−05
  6.10E−01
7.65E−01
2.80E−04
0.57
2.23E−03


STYX
0.82
1.81E−02
  1.52E+00
1.01E−03
2.76E−04
1.42
2.23E−03


SDHD
−0.90
5.29E−05
−9.17E−02
9.04E−01
2.81E−04
−0.90
2.23E−03


YKT6
1.05
3.87E−04
−1.05E+00
6.13E−02
3.20E−04
0.48
2.51E−03


GM5111

1.00E+00
  2.97E+00
3.54E−04
3.54E−04

2.75E−03


EIF3J1
1.47
1.06E−04
  5.25E−01
3.74E−01
3.68E−04
1.54
2.83E−03


E130309D02RIK
1.48
3.46E−04
  7.31E−01
8.77E−02
3.86E−04
1.55
2.87E−03


EMC10
0.53
1.17E−01
  1.61E+00
2.65E−04
3.79E−04
1.76
2.87E−03


RPS26
−0.26
7.32E−05
  2.12E−16
1.00E+00
3.85E−04
−0.26
2.87E−03


CAMK2D
0.95
1.68E−02
  1.45E+00
1.65E−03
4.07E−04
1.55
2.97E−03


ITGB1
0.59
1.08E−01
  1.84E+00
3.08E−04
4.08E−04
1.57
2.97E−03


ZFP622
1.51
1.77E−04
  5.07E−01
2.26E−01
4.25E−04
1.30
3.05E−03


MAPK1
0.97
3.38E−03
  1.59E+00
8.51E−03
4.27E−04
1.56
3.05E−03


RFNG
0.47
2.04E−01
  1.60E+00
1.94E−04
4.31E−04
1.94
3.05E−03


NPTN
−1.37
3.67E−04
−8.01E−01
9.73E−02
4.43E−04
−1.37
3.10E−03


RPL7A
−0.28
8.68E−05
  2.12E−16
1.00E+00
4.52E−04
−0.28
3.13E−03


LYSMD2
1.10
3.47E−03
  1.07E+00
9.46E−03
4.82E−04
1.86
3.31E−03


VPS37A
0.90
1.41E−02
  1.43E+00
2.70E−03
5.47E−04
1.58
3.67E−03


SLC30A9
1.02
2.92E−02
  1.41E+00
1.36E−03
5.51E−04
1.86
3.67E−03


RPS21
−0.35
1.06E−04
  2.12E−16
1.00E+00
5.44E−04
−0.35
3.67E−03


POLE4
0.86
8.45E−04
  1.60E+00
5.20E−02
5.77E−04
1.09
3.81E−03


IQGAP1
0.95
1.40E−04
−7.52E−01
5.66E−01
6.03E−04
0.93
3.95E−03


MTRF1L
0.61
2.51E−01
  1.69E+00
2.40E−04
6.09E−04
1.55
3.95E−03


HDAC9
−4.55
1.23E−04
  7.41E−02
1.00E+00
6.31E−04
−0.26
4.05E−03


RPL36A
−0.33
1.29E−04
  2.12E−16
1.00E+00
6.55E−04
−0.33
4.17E−03


ANKLE2
1.22
1.88E−03
  1.07E+00
2.56E−02
6.61E−04
1.49
4.17E−03


ABHD12
0.16
7.30E−01
  1.66E+00
1.42E−04
6.79E−04
1.86
4.24E−03


UBQLN1
0.86
1.16E−02
  1.61E+00
4.19E−03
6.83E−04
1.58
4.24E−03


SACS
0.34
6.27E−01
  1.91E+00
1.54E−04
6.90E−04
1.06
4.24E−03


YIPF4
0.87
5.63E−04
  1.47E+00
1.12E−01
7.41E−04
1.03
4.26E−03


ANXA2
0.77
1.43E−04
  4.12E−01
8.60E−01
7.11E−04
0.77
4.26E−03


A530064D06RIK
0.43
2.35E−02
  1.47E+00
2.25E−03
7.22E−04
0.38
4.26E−03


ARPC1B
0.43
1.44E−04
  2.12E−16
1.00E+00
7.27E−04
0.43
4.26E−03


IFT57
0.97
2.20E−02
  1.28E+00
2.44E−03
7.35E−04
1.65
4.26E−03


GTF2H5
0.88
2.01E−04
−6.71E−01
4.17E−01
7.17E−04
0.75
4.26E−03


ATP2B1
1.19
1.44E−04
  1.52E−01
7.97E−01
7.06E−04
1.08
4.26E−03


HIST2H2AC
1.63
1.81E−02
  1.78E+00
2.94E−03
7.33E−04
1.24
4.26E−03


EEF1A1
−0.30
1.51E−04
  2.12E−16
1.00E+00
7.61E−04
−0.30
4.34E−03


DDAH2
2.45
2.60E−03
−1.25E+00
2.17E−02
7.69E−04
−0.21
4.35E−03


AW554918
1.86
1.63E−04
−1.42E−01
8.09E−01
7.94E−04
0.26
4.37E−03


RAB24
0.28
5.86E−01
  1.65E+00
1.82E−04
7.82E−04
1.47
4.37E−03


INSL5
−4.06
6.56E−03
−1.73E+00
8.72E−03
7.98E−04
−2.52
4.37E−03


THAP11
0.64
8.01E−02
  1.47E+00
8.15E−04
7.97E−04
2.06
4.37E−03


ASF1A
0.68
5.82E−02
  1.40E+00
1.15E−03
8.42E−04
1.70
4.58E−03


FAM162A
−0.76
1.73E−04
  1.55E−01
9.93E−01
8.65E−04
−0.76
4.63E−03


WRNIP1
1.19
3.37E−02
  1.40E+00
1.95E−03
8.64E−04
1.38
4.63E−03


SRM
0.98
2.46E−03
  1.37E+00
2.68E−02
8.78E−04
1.96
4.66E−03


GLIS2
4.24
9.05E−04
−1.25E+00
8.07E−02
8.84E−04
0.07
4.66E−03


TRIM27
1.19
7.85E−04
  9.23E−01
9.67E−02
8.95E−04
1.47
4.69E−03


ZDHHC7
1.04
2.63E−02
  1.29E+00
2.58E−03
9.04E−04
1.85
4.70E−03


CCDC85B
0.64
3.91E−02
  1.59E+00
1.82E−03
9.22E−04
1.20
4.73E−03


KARS
−0.76
1.87E−04
  4.95E−01
8.53E−01
9.16E−04
−0.73
4.73E−03


ARGLU1
−0.84
1.91E−04
  3.61E−01
9.11E−01
9.45E−04
−0.83
4.77E−03


TNP2
−0.74
8.97E−02
−1.45E+00
8.83E−04
9.41E−04
−1.86
4.77E−03


CELF1
0.94
1.99E−04
  2.75E−01
8.30E−01
9.64E−04
0.94
4.80E−03


ALDOA
−0.33
1.95E−04
  2.12E−16
1.00E+00
9.71E−04
−0.33
4.80E−03


SUMF1
0.95
1.56E−01
  1.59E+00
5.67E−04
9.63E−04
1.56
4.80E−03


PDCD4
−0.82
4.50E−03
−2.10E+00
1.61E−02
9.79E−04
−1.33
4.81E−03


MRPL3
0.94
9.30E−04
  1.07E+00
9.20E−02
1.01E−03
1.46
4.91E−03


LIMS1
0.66
3.32E−02
  1.67E+00
2.36E−03
1.02E−03
1.37
4.93E−03


MLF2
0.72
2.37E−04
−4.48E−01
6.68E−01
1.06E−03
0.64
5.11E−03


RAB33B
1.30
3.19E−04
−4.65E−01
4.41E−01
1.14E−03
0.94
5.46E−03


DBI
0.76
2.41E−04
  3.96E−01
8.92E−01
1.17E−03
0.76
5.55E−03


GFER
0.78
3.95E−03
−1.76E+00
2.32E−02
1.19E−03
0.07
5.63E−03


RAP1A
0.88
2.75E−04
  7.85E−01
7.26E−01
1.26E−03
0.88
5.90E−03


H1F0
1.32
1.79E−03
  8.38E−01
5.89E−02
1.28E−03
1.67
5.96E−03


XDH
2.22
2.08E−02
  1.70E+00
4.92E−03
1.32E−03
1.21
6.11E−03


APIP
1.51
5.49E−04
−4.87E−01
2.59E−01
1.35E−03
0.06
6.16E−03


ANKRD13A
0.61
1.41E−01
  1.45E+00
8.88E−04
1.35E−03
1.63
6.16E−03


HIST1H3A
−0.73
2.46E−01
  2.23E+00
5.88E−04
1.39E−03
0.78
6.28E−03


PAXBP1
−0.94
2.43E−03
−1.11E+00
5.02E−02
1.48E−03
−1.34
6.68E−03


6030458C11RIK
−1.38
3.12E−04
  6.07E−02
8.95E−01
1.49E−03
−1.02
6.68E−03


FAU
−0.25
3.17E−04
  2.12E−16
1.00E+00
1.53E−03
−0.25
6.79E−03


ERI1
0.58
3.08E−02
  1.76E+00
3.98E−03
1.54E−03
1.12
6.79E−03


PRG4
1.02
4.05E−02
−1.57E+00
3.14E−03
1.56E−03
−0.09
6.87E−03


FZR1
0.82
1.77E−02
  1.43E+00
6.97E−03
1.57E−03
1.72
6.87E−03


CHD7
0.91
3.47E−04
−2.77E−01
8.59E−01
1.64E−03
0.88
7.10E−03


JUND
0.73
7.14E−04
  4.85E−01
2.45E−01
1.66E−03
0.61
7.15E−03


MIDN
1.01
7.18E−04
  5.70E−01
2.48E−01
1.68E−03
1.02
7.21E−03


EXOSC6
0.61
2.57E−01
  1.56E+00
7.06E−04
1.70E−03
1.50
7.22E−03


RPS15
−0.24
3.61E−04
  2.12E−16
1.00E+00
1.72E−03
−0.24
7.30E−03


OCIAD1
0.51
3.81E−04
  6.44E−01
7.68E−01
1.74E−03
0.52
7.31E−03


STXBP1
0.96
1.20E−01
  1.56E+00
1.34E−03
1.75E−03
1.22
7.32E−03


USP39
0.88
3.80E−03
  1.44E+00
3.80E−02
1.76E−03
1.27
7.32E−03


DAXX
0.45
8.40E−02
−2.44E+00
1.93E−03
1.84E−03
−0.97
7.54E−03


RABGAP1
−1.05
1.92E−02
−1.11E+00
7.63E−03
1.83E−03
−1.31
7.54E−03


GLB1L
−1.77
5.95E−03
−1.14E+00
2.60E−02
1.91E−03
−0.75
7.77E−03


HERPUD1
1.22
4.18E−04
  1.40E−01
7.78E−01
1.90E−03
1.10
7.77E−03


MARC2
0.62
1.43E−02
−1.54E+00
1.15E−02
2.05E−03
−0.83
8.27E−03


RC3H1
1.10
5.92E−04
  3.16E−01
4.61E−01
2.09E−03
0.83
8.38E−03


DONSON
1.03
4.12E−02
  1.20E+00
4.27E−03
2.10E−03
1.75
8.39E−03


PDGFB
1.34
4.97E−04
  1.88E−01
6.76E−01
2.13E−03
1.02
8.47E−03


RBPJ
−0.66
4.55E−04
  9.10E−02
1.00E+00
2.14E−03
−0.66
8.47E−03


SPATA5L1
0.31
6.51E−01
  1.66E+00
5.23E−04
2.20E−03
1.30
8.62E−03


CYP4F17
−1.50
6.37E−02
−1.98E+00
3.02E−03
2.21E−03
−0.41
8.62E−03


CHTF18
0.66
1.16E−01
  1.66E+00
1.86E−03
2.29E−03
1.32
8.86E−03


HIST1H2AC
4.08
7.12E−04
−6.84E−01
4.01E−01
2.28E−03
0.03
8.86E−03


NSUN2
0.89
1.07E−03
  8.23E−01
2.40E−01
2.38E−03
1.21
9.08E−03


MAPK6
0.61
4.22E−02
  2.39E+00
4.79E−03
2.38E−03
1.02
9.08E−03


FRMD6
−1.29
5.03E−03
  9.28E−01
4.17E−02
2.46E−03
−0.04
9.29E−03


ODC1
1.13
5.40E−04
  1.59E−01
8.26E−01
2.45E−03
1.12
9.29E−03


CTBP1
1.09
1.38E−03
  5.97E−01
1.86E−01
2.49E−03
1.34
9.38E−03


PITHD1
0.70
5.45E−02
  1.37E+00
4.25E−03
2.65E−03
1.81
9.90E−03


SSBP4
0.27
4.49E−01
  1.54E+00
7.88E−04
2.68E−03
1.61
9.98E−03


RFX3
1.77
2.63E−03
−9.27E−01
9.65E−02
2.72E−03
−0.02
1.00E−02


TRIM24
1.30
3.48E−03
  7.69E−01
6.99E−02
2.71E−03
0.80
1.00E−02


RPS20
−0.30
5.92E−04
  2.12E−16
1.00E+00
2.74E−03
−0.30
1.00E−02


TEC
−1.94
6.18E−04
  1.22E−01
8.05E−01
2.76E−03
−0.28
1.01E−02


PHLDA3
0.96
4.66E−02
  1.24E+00
5.55E−03
2.95E−03
2.09
1.06E−02


TRPM3
−2.12
2.73E−03
  1.35E+00
1.03E−01
2.96E−03
−0.01
1.06E−02


TRAPPC6B
1.26
7.22E−04
  2.31E−01
6.32E−01
2.94E−03
1.21
1.06E−02


RPL28
−0.27
6.69E−04
  2.12E−16
1.00E+00
3.07E−03
−0.27
1.09E−02


1810026J23RIK
0.35
3.71E−01
  1.47E+00
1.03E−03
3.06E−03
1.58
1.09E−02


GNAI2
0.73
1.13E−03
−1.28E+00
3.54E−01
3.25E−03
0.69
1.15E−02


MXD4
5.26
4.14E−03
  1.78E+00
7.29E−02
3.28E−03
0.74
1.15E−02


HPS6
1.30
1.20E−03
  4.22E−01
3.30E−01
3.28E−03
1.08
1.15E−02


PJA1
−1.02
7.27E−04
−1.94E−02
1.00E+00
3.32E−03
−0.82
1.16E−02


TDP2
0.52
2.81E−01
  1.41E+00
1.39E−03
3.37E−03
1.84
1.17E−02


DGAT2
1.60
2.17E−01
−2.78E+00
1.79E−03
3.55E−03
−0.35
1.22E−02


TMEM102
−7.18
2.07E−03
  1.64E+00
1.92E−01
3.71E−03
−0.01
1.27E−02


FBXO2
1.52
1.66E−02
  1.20E+00
1.99E−02
3.78E−03
1.45
1.29E−02


GM4951
−2.97
3.17E−03
−8.57E−01
1.24E−01
3.94E−03
−0.67
1.34E−02


ASPM
1.19
2.17E−03
  8.42E−01
2.00E−01
4.01E−03
0.52
1.36E−02


RPL18
−0.22
9.24E−04
  2.12E−16
1.00E+00
4.14E−03
−0.22
1.39E−02


ABHD15
4.36
3.50E−03
−1.20E+00
1.24E−01
4.30E−03
0.08
1.44E−02


TUSC2
0.31
5.09E−01
  1.41E+00
1.25E−03
4.41E−03
1.64
1.47E−02


ACTB
−0.36
1.00E−03
  2.12E−16
1.00E+00
4.46E−03
−0.36
1.48E−02


FBXL22
−2.73
1.06E−03
  1.69E−01
7.93E−01
4.54E−03
−0.31
1.50E−02


GTF2A1
−1.18
1.22E−03
  2.36E−01
6.17E−01
4.72E−03
−0.75
1.54E−02


CALM1
0.45
1.28E−03
−9.16E−01
5.59E−01
4.71E−03
0.43
1.54E−02


UPF3A
0.68
1.19E−01
  1.21E+00
4.08E−03
4.80E−03
1.66
1.56E−02


PIK3C2B
−0.56
3.39E−01
−1.58E+00
1.82E−03
4.91E−03
−0.62
1.59E−02


LRRFIP2
0.99
1.24E−02
  8.81E−01
3.71E−02
5.01E−03
1.36
1.62E−02


TAF4
1.14
3.70E−02
−1.14E+00
1.27E−02
5.10E−03
−0.31
1.64E−02


TAF2
−0.20
6.11E−01
  1.36E+00
1.35E−03
5.15E−03
0.66
1.65E−02


GGNBP2
1.00
3.18E−03
  9.19E−01
1.80E−01
5.25E−03
1.26
1.67E−02


GATAD2A
0.64
2.12E−02
  1.87E+00
2.36E−02
5.43E−03
1.05
1.72E−02


GM8096

1.00E+00
  2.30E+00
5.49E−03
5.49E−03

1.73E−02


AKR1B3
0.57
5.83E−03
  1.51E+00
9.45E−02
5.52E−03
0.82
1.74E−02


LTA
−1.13
1.61E−03
−5.70E−01
5.32E−01
5.69E−03
−1.17
1.78E−02


WDR24
0.81
2.67E−02
  1.01E+00
2.07E−02
5.90E−03
1.48
1.84E−02


LAPTM4B
2.03
1.40E−03
−5.19E−02
8.89E−01
6.02E−03
0.52
1.87E−02


MARK4
1.48
2.96E−03
  5.64E−01
2.43E−01
6.11E−03
0.78
1.89E−02


MICU2
0.63
3.65E−02
  1.26E+00
1.60E−02
6.15E−03
1.53
1.89E−02


RPL12
−0.25
1.43E−03
  2.12E−16
1.00E+00
6.18E−03
−0.25
1.89E−02


CCDC12
0.81
1.98E−03
  6.55E−01
4.49E−01
6.28E−03
0.93
1.92E−02


CCR3

1.00E+00
  3.05E+00
6.51E−03
6.51E−03

1.98E−02


UBXN2A
1.21
3.80E−03
  5.67E−01
2.00E−01
6.66E−03
1.33
2.01E−02


CTSF
4.73
6.85E−03
−1.20E+00
1.03E−01
6.84E−03
0.16
2.06E−02


SMARCA5
0.53
1.50E−01
  1.36E+00
5.66E−03
7.71E−03
1.36
2.31E−02


PLEK
−0.36
4.84E−01
  1.41E+00
2.45E−03
7.95E−03
1.42
2.37E−02


GZMB
1.01
1.28E−01
  1.12E+00
6.96E−03
8.21E−03
2.11
2.44E−02


NRM
−1.15
4.65E−03
−5.89E−01
2.14E−01
8.41E−03
−1.43
2.48E−02


BHLHE40
−0.73
2.03E−03
  4.47E−01
8.55E−01
8.42E−03
−0.73
2.48E−02


HIST1H2AH
2.10
3.16E−02
−1.81E+00
2.65E−02
8.47E−03
−0.15
2.48E−02


GM5177
0.23
1.44E−02
−7.82E−01
6.02E−02
8.55E−03
−0.03
2.50E−02


PSMD3
0.58
2.69E−03
  7.33E−01
4.98E−01
8.80E−03
0.61
2.56E−02


ARID3A
0.75
4.66E−02
  9.95E−01
2.02E−02
9.30E−03
1.01
2.69E−02


MRPL11
0.55
2.12E−02
−1.14E+00
4.45E−02
9.32E−03
−0.04
2.69E−02


IL22

1.00E+00
  2.80E+00
9.43E−03
9.43E−03

2.71E−02


CANX
−0.44
2.27E−03
  2.12E−16
1.00E+00
9.46E−03
−0.44
2.71E−02


TMSB10
0.35
2.34E−03
  2.12E−16
1.00E+00
9.76E−03
0.35
2.77E−02


RPGRIP1
−0.59
8.48E−02
−1.09E+00
1.21E−02
9.74E−03
−1.03
2.77E−02


C2CD2L
−1.15
8.56E−03
  6.49E−01
1.44E−01
1.09E−02
−0.08
3.07E−02


RPS27A
−0.20
2.84E−03
  2.12E−16
1.00E+00
1.16E−02
−0.20
3.28E−02


RPS10
−0.21
2.91E−03
  2.12E−16
1.00E+00
1.19E−02
−0.21
3.32E−02


ZBED6
0.67
8.45E−02
−1.05E+00
1.53E−02
1.19E−02
−0.28
3.32E−02


RPL19
−0.17
2.92E−03
  2.12E−16
1.00E+00
1.19E−02
−0.17
3.32E−02


GPR18
0.63
5.19E−02
  1.50E+00
2.46E−02
1.21E−02
1.34
3.35E−02


GARS
0.59
5.10E−03
  1.38E+00
3.25E−01
1.22E−02
0.61
3.35E−02


MAP2K2
0.56
1.37E−02
  2.10E+00
9.77E−02
1.22E−02
0.70
3.35E−02


A130010J15RIK
−1.19
1.81E−02
−7.75E−01
7.36E−02
1.23E−02
−1.19
3.35E−02


RBM3
−0.36
3.02E−03
  2.12E−16
1.00E+00
1.23E−02
−0.36
3.35E−02


ISCU
0.65
2.38E−02
  1.22E+00
5.47E−02
1.23E−02
1.23
3.35E−02


ADIPOR1
0.78
4.40E−03
  7.02E−01
4.16E−01
1.25E−02
0.90
3.37E−02


ITFG2
1.22
3.84E−03
  2.67E−01
5.33E−01
1.26E−02
0.50
3.40E−02


RPS28
−0.26
3.16E−03
  2.12E−16
1.00E+00
1.28E−02
−0.26
3.45E−02


MAX
0.78
3.32E−03
  1.53E−01
8.32E−01
1.31E−02
0.77
3.51E−02


CCDC102A

1.00E+00
−1.97E+00
1.35E−02
1.35E−02

3.60E−02


RPL23
−0.18
3.47E−03
  2.12E−16
1.00E+00
1.40E−02
−0.18
3.71E−02


GBF1
0.50
1.16E−01
  1.19E+00
1.39E−02
1.41E−02
1.05
3.73E−02


ADAM28
0.34
7.76E−02
  9.76E−01
2.01E−02
1.41E−02
0.37
3.73E−02


WIPI2
0.70
2.81E−02
  1.14E+00
6.75E−02
1.69E−02
1.07
4.43E−02


GRINA
0.62
2.20E−02
−1.30E+00
9.03E−02
1.73E−02
−0.24
4.54E−02


CDH11
0.25
8.19E−02
−1.02E+00
2.46E−02
1.76E−02
−0.05
4.59E−02


ZFP420

1.00E+00
  2.22E+00
1.77E−02
1.77E−02

4.59E−02


SLAIN2
1.41
8.38E−03
  4.53E−01
2.91E−01
1.77E−02
0.60
4.59E−02


DNA2
−0.97
4.82E−02
−9.50E−01
4.36E−02
1.86E−02
−1.06
4.79E−02


TMEM265
−0.52
5.21E−01
−1.59E+00
6.00E−03
1.87E−02
−0.94
4.80E−02


APLF
−0.09
7.96E−01
−1.34E+00
5.06E−03
1.90E−02
−0.71
4.87E−02


DYNC1LI1
0.86
1.16E−02
  9.87E−01
2.17E−01
1.93E−02
1.05
4.92E−02


SLC7A5
0.99
9.53E−03
  4.57E−01
3.01E−01
2.04E−02
0.84
5.15E−02


NHLRC2
0.81
8.24E−02
  9.32E−01
2.91E−02
2.04E−02
1.28
5.15E−02


CBLN3
0.59
6.31E−03
−2.45E−01
5.69E−01
2.04E−02
0.21
5.15E−02


ZFP109
1.91
1.09E−01
  1.49E+00
2.24E−02
2.05E−02
0.36
5.15E−02


MRS2
0.91
1.10E−02
  5.15E−01
2.63E−01
2.11E−02
1.08
5.29E−02


CISD3
−0.80
5.54E−03
  7.77E−02
9.48E−01
2.13E−02
−0.73
5.32E−02


HSH2D
−0.63
3.75E−01
−1.47E+00
8.74E−03
2.17E−02
−0.53
5.40E−02


RPS13
−0.17
5.72E−03
  2.12E−16
1.00E+00
2.20E−02
−0.17
5.45E−02


MTX1
0.52
5.73E−02
−1.38E+00
4.56E−02
2.23E−02
−0.12
5.50E−02


BEND4
1.02
6.41E−03
  1.86E−01
6.93E−01
2.25E−02
0.87
5.54E−02


SLC4A11
0.85
8.01E−03
  3.68E−01
4.84E−01
2.33E−02
1.00
5.72E−02


NCOA1
1.00
6.14E−03
  2.04E−02
9.86E−01
2.34E−02
0.67
5.73E−02


HIST2H3C2
0.77
1.16E−01
  1.48E+00
2.53E−02
2.38E−02
1.77
5.80E−02


MTRF1
−0.78
1.16E−01
  1.09E+00
2.62E−02
2.45E−02
0.52
5.95E−02


CHCHD10
0.64
8.36E−03
  7.25E−01
5.21E−01
2.51E−02
0.74
6.08E−02


EGFP_IRES_IL23R
1.59
8.29E−02
  1.35E+00
3.70E−02
2.52E−02
2.43
6.09E−02


MMS22L
0.81
4.38E−02
  8.49E−01
7.00E−02
2.54E−02
1.11
6.11E−02


PRDX2
−0.42
6.84E−03
  2.12E−16
1.00E+00
2.58E−02
−0.42
6.19E−02


RNR1
0.54
6.98E−03
  2.19E−02
1.00E+00
2.63E−02
0.54
6.28E−02


RBM43
−0.48
2.17E−01
−1.01E+00
1.73E−02
2.75E−02
−1.28
6.54E−02


ZFP944
−0.98
9.89E−03
  3.41E−01
4.68E−01
2.76E−02
−0.46
6.54E−02


ZC3H12C
2.14
3.34E−02
−1.10E+00
1.11E−01
2.93E−02
−0.01
6.92E−02


PRMT5
0.62
2.34E−02
  8.63E−01
1.66E−01
2.94E−02
1.04
6.92E−02


DTD1
0.81
9.24E−03
−2.67E−01
6.19E−01
2.98E−02
0.25
7.01E−02


WDR83
0.91
1.09E−02
−3.24E−01
4.66E−01
3.00E−02
0.14
7.02E−02


KHNYN
−0.52
2.28E−01
−1.02E+00
1.86E−02
3.03E−02
−0.99
7.07E−02


NUDCD1
−1.09
8.33E−03
  4.01E−03
9.88E−01
3.08E−02
−0.80
7.11E−02


SAA4
−0.04
8.14E−01
  1.36E+00
8.54E−03
3.06E−02
0.14
7.11E−02


PLBD2
0.35
3.00E−01
  1.17E+00
1.52E−02
3.08E−02
1.17
7.11E−02


GM20939
−0.80
1.48E−02
−6.14E−01
3.32E−01
3.20E−02
−0.92
7.36E−02


IFITM2
−0.66
9.52E−03
  6.88E−01
7.07E−01
3.23E−02
−0.62
7.40E−02


ACTR2
−0.41
8.79E−03
  2.12E−16
1.00E+00
3.23E−02
−0.41
7.40E−02


FURIN
0.41
2.08E−01
−2.46E+00
2.19E−02
3.27E−02
0.11
7.44E−02


SKAP1
0.21
4.14E−01
−2.05E+00
1.29E−02
3.26E−02
−0.49
7.44E−02


SYNGAP1
0.81
1.56E−01
−1.00E+00
2.86E−02
3.33E−02
−0.16
7.51E−02


RBFOX2
2.97
1.62E−02
  9.60E−01
3.11E−01
3.32E−02
0.50
7.51E−02


PGAM1
−0.44
9.10E−03
  5.37E−02
1.00E+00
3.33E−02
−0.43
7.51E−02


GABARAP
−0.49
9.14E−03
  3.72E−02
1.00E+00
3.35E−02
−0.49
7.51E−02


ATP6V0D2
−1.33
1.28E−02
  3.65E−01
4.44E−01
3.37E−02
−0.33
7.55E−02


TRP53I11
0.13
6.75E−01
−1.21E+00
1.03E−02
3.42E−02
−1.19
7.62E−02


ANKRD46
−0.63
2.10E−02
−7.77E−01
2.36E−01
3.45E−02
−0.85
7.65E−02


P4HA2
−0.92
2.25E−02
−5.29E−01
2.17E−01
3.45E−02
−1.24
7.65E−02


ARL6IP5
−0.45
6.55E−02
−2.03E+00
6.86E−02
3.50E−02
−0.75
7.72E−02


GM10416
1.46
3.85E−02
−9.71E−01
1.21E−01
3.54E−02
−0.08
7.79E−02


TCTEX1D1
−2.53
1.35E−02
  6.12E−01
4.52E−01
3.56E−02
−0.05
7.82E−02


PGP
0.73
1.66E−02
  5.52E−01
3.39E−01
3.60E−02
0.98
7.87E−02


ATP5G2
−0.29
1.03E−02
  2.12E−16
1.00E+00
3.71E−02
−0.29
8.10E−02


GYPC
0.89
1.40E−02
−3.57E−01
4.66E−01
3.73E−02
0.48
8.11E−02


TAGAP
0.93
7.93E−02
−8.82E−01
6.16E−02
3.74E−02
−0.27
8.11E−02


SLC17A9
−0.11
7.46E−01
−1.54E+00
1.12E−02
3.80E−02
−0.78
8.22E−02


COX15
0.22
6.24E−01
−1.11E+00
1.23E−02
3.86E−02
−0.37
8.33E−02


LGALS4
−1.06
1.33E−02
  2.38E−01
5.47E−01
3.89E−02
−0.16
8.34E−02


PABPC4
0.71
4.66E−02
−8.71E−01
1.11E−01
3.89E−02
−0.05
8.34E−02


CDCA7
−0.11
7.64E−01
−1.49E+00
1.16E−02
3.96E−02
−1.01
8.46E−02


CTSD
0.57
1.89E−02
  1.40E+00
3.33E−01
3.99E−02
0.62
8.49E−02


NCAPH2
−0.24
2.77E−01
−2.29E+00
2.19E−02
4.01E−02
−0.54
8.51E−02


ARPC3
0.54
1.28E−02
  8.12E−01
6.35E−01
4.02E−02
−0.51
8.51E−02


STAU1
0.65
2.56E−02
  6.46E−01
2.32E−01
4.06E−02
0.90
8.57E−02


RINL
0.74
3.24E−02
−6.96E−01
1.79E−01
4.11E−02
−0.05
8.64E−02


CCDC184
0.48
5.50E−01
−1.22E+00
1.41E−02
4.12E−02
−0.54
8.65E−02


AGPAT5
0.42
1.68E−01
  1.24E+00
3.64E−02
4.34E−02
0.45
9.07E−02


PAIP1
−0.51
7.01E−02
−9.91E−01
8.39E−02
4.35E−02
−0.80
9.08E−02


AKNA
0.69
1.39E−02
  1.83E−01
7.35E−01
4.58E−02
0.70
9.53E−02


MDFIC
0.79
1.33E−02
  2.70E−02
9.58E−01
4.66E−02
0.65
9.65E−02


ZBTB7A
0.74
1.71E−02
−4.46E−01
5.11E−01
4.69E−02
0.62
9.70E−02


KLF6
0.69
3.43E−02
−8.59E−01
2.08E−01
4.83E−02
0.41
9.95E−02


TRAF3IP3
0.44
1.57E−01
  1.26E+00
4.43E−02
4.86E−02
1.23
9.98E−02


PDE4B
0.86
4.37E−02
  7.72E−01
1.60E−01
4.87E−02
1.17
9.98E−02
















TABLE 1D







Th17 Ctrl GFP+ vs GFP−














Gene
coefC
pvalC
coefD
pvalD
pvalH
logFC
FDR

















IL23R
1.41
3.62E−02
4.02E+00
3.92E−22
5.36E−22
4.29
7.04E−18


OST4
1.71
3.76E−16
9.93E−01
6.10E−01
3.42E−15
1.74
2.25E−11


EGFP_IRES_IL23R
3.10
1.03E−02
3.77E+00
7.06E−14
2.50E−14
2.90
1.10E−10


LARS2
−0.93
5.68E−15
1.18E−16
1.00E+00
5.65E−14
−0.93
1.86E−10


SDHD
1.48
1.43E−13
1.20E+00
5.22E−01
1.10E−12
1.49
2.90E−09


CALM2
1.06
1.55E−13
1.18E−16
1.00E+00
1.46E−12
1.06
3.20E−09


IZUMO1R
−1.61
5.82E−07
−2.57E+00 
4.20E−07
1.05E−11
−3.67
1.96E−08


IL12RB2
1.84
1.27E−08
2.35E+00
4.54E−05
2.29E−11
3.02
3.77E−08


RORA
1.18
2.84E−03
2.25E+00
2.86E−09
2.54E−10
2.30
3.71E−07


NPTN
1.80
2.52E−09
1.33E+00
3.87E−03
2.98E−10
2.18
3.92E−07


PRRC2A
−1.13
1.27E−10
−1.80E+00 
1.55E−01
3.80E−10
−1.16
4.54E−07


LSM4
−1.25
1.58E−10
1.08E+00
2.78E−01
7.21E−10
−1.10
7.90E−07


CCDC71L
0.85
3.78E−02
2.34E+00
9.40E−10
8.55E−10
2.12
8.65E−07


CASP6
1.43
5.71E−10
1.20E+00
1.16E−01
1.32E−09
1.71
1.24E−06


RNH1
0.94
1.93E−10
1.18E−16
1.00E+00
1.57E−09
0.94
1.38E−06


COX17
0.93
2.98E−10
5.81E−01
8.63E−01
2.37E−09
0.93
1.95E−06


OSTF1
1.45
1.04E−08
1.87E+00
2.32E−02
5.82E−09
1.86
4.50E−06


EMB
1.22
1.31E−09
1.08E+00
4.87E−01
8.01E−09
1.24
5.85E−06


SMOX
1.66
2.99E−08
1.61E+00
1.60E−02
1.17E−08
2.34
8.13E−06


NCS1
1.49
1.97E−09
−3.45E−01 
5.45E−01
1.26E−08
1.32
8.32E−06


TRIP10
1.31
4.41E−06
1.55E+00
1.11E−04
1.51E−08
2.13
9.45E−06


RAD50
−1.26
6.40E−09
−6.14E−01 
2.40E−01
2.40E−08
−1.36
1.44E−05


TIAM1
−1.42
2.41E−04
−1.66E+00 
4.28E−06
3.04E−08
−1.68
1.74E−05


TIMP1
2.32
3.00E−03
1.83E+00
9.54E−07
7.44E−08
3.87
4.08E−05


HIVEP3
−1.51
1.94E−07
−8.81E−01 
1.77E−02
7.87E−08
−1.62
4.14E−05


S1PR1
1.25
1.96E−05
1.58E+00
1.56E−04
8.66E−08
2.33
4.38E−05


ARGLU1
1.09
1.53E−08
1.08E−01
1.00E+00
1.12E−07
1.08
5.46E−05


BHLHE40
1.43
2.00E−07
1.35E+00
6.42E−02
2.43E−07
1.77
1.14E−04


PDGFA
1.46
4.10E−02
2.29E+00
3.65E−07
2.99E−07
2.01
1.31E−04


AHCYL2
−1.13
9.11E−05
−1.73E+00 
1.21E−04
2.92E−07
2.05
1.31E−04


IL4
−1.42
1.60E−02
−1.90E+00 
9.98E−07
3.50E−07
−2.52
1.48E−04


SBNO2
1.28
1.22E−07
1.70E+00
2.00E−01
3.68E−07
1.34
1.51E−04


NOL7
−1.13
4.33E−06
−1.81E+00 
5.20E−03
5.25E−07
−1.69
2.09E−04


H2-Q10
1.84
2.31E−05
1.13E+00
1.40E−03
7.84E−07
2.61
2.79E−04


FLOT1
1.14
3.82E−05
2.08E+00
8.11E−04
7.62E−07
1.92
2.79E−04


LGALS1
0.85
1.12E−07
1.18E−16
1.00E+00
7.71E−07
0.85
2.79E−04


TSPO
0.82
1.44E−07
1.07E+00
4.86E−01
7.71E−07
0.86
2.79E−04


JUNB
0.93
1.46E−07
1.18E−16
1.00E+00
9.95E−07
0.93
3.42E−04


TMEM258
0.70
1.49E−07
1.18E−16
1.00E+00
1.01E−06
0.70
3.42E−04


ACTB
0.53
1.66E−07
1.18E−16
1.00E+00
1.13E−06
0.53
3.70E−04


IL17F
7.41
1.04E−04
1.75E+00
4.86E−04
1.22E−06
2.68
3.92E−04


NPC2
0.82
2.04E−07
1.18E−16
1.00E+00
1.38E−06
0.82
4.31E−04


UBASH3A
−0.85
6.02E−03
−1.59E+00 
1.32E−05
1.73E−06
−2.33
4.81E−04


PKIB
1.34
8.54E−02
2.19E+00
1.18E−06
1.70E−06
1.20
4.81E−04


STAT5A
1.11
2.72E−07
8.05E−01
7.53E−01
1.73E−06
1.12
4.81E−04


RPS2
−0.78
2.68E−07
1.18E−16
1.00E+00
1.79E−06
−0.78
4.81E−04


GNB5
0.55
6.89E−02
1.88E+00
1.43E−06
1.72E−06
2.48
4.81E−04


TPT1
−0.39
2.69E−07
1.18E−16
1.00E+00
1.79E−06
−0.39
4.81E−04


RNF187
−1.40
1.45E−06
−1.00E+00 
6.32E−02
1.62E−06
−1.82
4.81E−04


INPP5B
1.24
5.23E−07
7.84E−01
2.75E−01
1.88E−06
1.43
4.95E−04


NMT1
1.15
3.77E−06
1.85E+00
2.76E−02
2.02E−06
1.32
5.20E−04


ARHGDIA
0.47
3.30E−07
1.18E−16
1.00E+00
2.19E−06
0.47
5.47E−04


LTB
−1.61
1.35E−06
−7.33E−01 
1.01E−01
2.21E−06
−1.95
5.47E−04


TREML2
−1.13
3.47E−05
−1.11E+00 
3.46E−03
2.64E−06
−1.84
6.44E−04


PABPC1
−0.55
4.21E−07
1.18E−16
1.00E+00
2.77E−06
−0.55
6.62E−04


SH2D3C
−1.34
7.23E−05
−1.13E+00 
1.74E−03
2.83E−06
−1.82
6.64E−04


MT2
1.69
6.27E−06
8.36E−01
2.80E−02
3.32E−06
2.37
7.67E−04


NDUFA1
0.75
9.18E−07
1.36E+00
3.20E−01
3.58E−06
0.80
7.85E−04


TMEM160
−1.20
1.04E−05
−9.29E−01 
1.75E−02
3.56E−06
−1.79
7.85E−04


RNF10
−1.21
9.36E−06
−1.25E+00 
1.93E−02
3.52E−06
−1.56
7.85E−04


MYCN
−1.36
2.00E−01
2.53E+00
1.36E−06
3.77E−06
1.41
8.00E−04


SMIM3
0.56
1.37E−01
1.76E+00
1.81E−06
3.73E−06
2.64
8.00E−04


ILTIFB

1.00E+00
3.62E+00
4.09E−06
4.09E−06

8.16E−04


MTMR7
0.88
8.76E−03
1.60E+00
2.28E−05
4.09E−06
2.09
8.16E−04


H2-T23
0.68
6.16E−07
1.18E−16
1.00E+00
3.99E−06
0.68
8.16E−04


SUN2
−1.20
3.48E−06
−7.46E−01 
7.00E−02
4.08E−06
−1.50
8.16E−04


PTPN14
1.30
1.81E−02
2.10E+00
1.36E−05
4.78E−06
0.75
9.39E−04


SOCS3
1.22
2.93E−04
1.76E+00
7.74E−04
4.99E−06
2.20
9.66E−04


IL22
5.60
6.60E−03
2.47E+00
3.89E−05
5.27E−06
1.93
1.01E−03


ITSN2
−1.03
3.75E−04
−1.43E+00 
7.03E−04
5.75E−06
−1.74
1.05E−03


D17H6S53E
1.09
1.12E−05
9.75E−01
2.79E−02
5.77E−06
1.30
1.05E−03


ANXA2
1.18
8.81E−07
1.18E−16
1.00E+00
5.64E−06
1.18
1.05E−03


TUBA1A
0.97
2.13E−06
1.65E+00
2.19E−01
6.19E−06
1.09
1.12E−03


RPS28
0.38
1.02E−06
1.18E−16
1.00E+00
6.46E−06
0.38
1.15E−03


ERMN
1.44
2.99E−04
1.35E+00
1.09E−03
7.00E−06
2.52
1.23E−03


SPHK1
−0.96
3.38E−01
2.32E+00
1.87E−06
7.34E−06
1.08
1.27E−03


SRRM2
−0.76
1.22E−06
1.18E−16
1.00E+00
7.70E−06
−0.76
1.32E−03


TRIM27
−1.39
4.25E−06
−6.99E−01 
1.34E−01
8.34E−06
−1.52
1.39E−03


ACSL4
0.98
1.85E−06
−1.16E+00 
4.23E−01
8.37E−06
0.94
1.39E−03


CRISPLD2
1.07
2.52E−01
2.14E+00
2.80E−06
8.87E−06
1.47
1.46E−03


MS4A6D
2.75
1.76E−06
2.58E−01
5.34E−01
9.03E−06
0.71
1.47E−03


ADAM8
1.71
1.20E−03
1.35E+00
3.63E−04
9.16E−06
1.66
1.47E−03


PRDX2
0.58
1.54E−06
1.18E−16
1.00E+00
9.64E−06
0.58
1.53E−03


SNAPC1
0.74
1.50E−03
3.11E+00
3.31E−04
1.03E−05
1.42
1.61E−03


HSD17B10
0.82
1.67E−06
3.40E−01
1.00E+00
1.06E−05
0.86
1.62E−03


SEPT2
0.90
2.16E−06
1.08E+00
4.87E−01
1.05E−05
0.92
1.62E−03


CKS2
0.78
4.87E−06
1.82E+00
1.59E−01
1.08E−05
0.90
1.63E−03


CLK4
−0.40
1.53E−01
2.26E+00
5.11E−06
1.10E−05
1.15
1.64E−03


ATXN1
−1.11
1.82E−06
4.97E−02
1.00E+00
1.14E−05
−0.98
1.69E−03


CBX3
0.78
1.89E−06
1.18E−16
1.00E+00
1.17E−05
0.78
1.72E−03


UNC50
1.07
4.64E−06
1.02E+00
1.92E−01
1.19E−05
1.32
1.72E−03


RASGRP1
−0.75
1.73E−02
−1.59E+00 
4.30E−05
1.37E−05
−1.63
1.94E−03


TOMM7
0.56
2.22E−06
1.18E−16
1.00E+00
1.37E−05
0.56
1.94E−03


PRPF8
−0.72
2.68E−06
−1.73E−01 
8.53E−01
1.61E−05
−0.72
2.26E−03


IL16
−0.11
7.04E−01
−1.83E+00 
2.95E−06
1.68E−05
−1.87
2.32E−03


GPR34

1.00E+00
−3.67E+00 
1.85E−05
1.85E−05

2.53E−03


S100A10
0.87
3.33E−06
1.18E−16
1.00E+00
2.02E−05
0.87
2.69E−03


FCF1
0.74
1.77E−05
2.10E+00
7.21E−02
1.98E−05
0.96
2.69E−03


WNK1
−0.76
6.78E−06
−1.55E+00 
2.41E−01
2.01E−05
−0.79
2.69E−03


SERPINE1
0.62
3.12E−01
1.87E+00
6.49E−06
2.30E−05
1.15
3.02E−03


GIMAP4
−0.78
5.99E−04
−2.61E+00 
2.15E−03
2.50E−05
−1.32
3.25E−03


D630039A03RIK
−1.44
1.69E−02
−1.73E+00 
9.27E−05
2.77E−05
−1.50
3.57E−03


RAB37
0.48
6.02E−01
−2.32E+00 
5.98E−06
3.09E−05
−1.04
3.95E−03


GPBP1L1
−1.16
2.08E−05
7.34E−01
1.20E−01
3.49E−05
−0.67
4.42E−03


ZBTB7C
−0.78
5.08E−01
2.83E+00
8.21E−06
3.85E−05
0.61
4.75E−03


IL1R1
0.76
6.58E−01
2.78E+00
7.17E−06
3.83E−05
0.82
4.75E−03


NOTCH1
−0.86
8.77E−06
−5.79E−01 
4.55E−01
3.87E−05
−0.89
4.75E−03


LUM
2.31
1.70E−03
1.27E+00
1.23E−03
3.93E−05
2.08
4.79E−03


NANOG
0.86
1.05E−05
3.80E−01
3.71E−01
4.07E−05
0.82
4.91E−03


LY6A
0.86
7.69E−06
1.18E−16
1.00E+00
4.51E−05
0.85
5.40E−03


IL17A
3.32
3.20E−01
2.57E+00
1.31E−05
4.60E−05
2.42
5.42E−03


RAD23A
0.93
2.81E−05
1.91E+00
1.19E−01
4.62E−05
1.06
5.42E−03


GSK3B
0.87
1.38E−05
1.46E+00
3.15E−01
4.74E−05
0.92
5.52E−03


REST
−1.16
2.55E−05
−5.71E−01 
1.44E−01
4.87E−05
−1.21
5.62E−03


WTAP
0.75
7.17E−04
2.79E+00
3.85E−03
5.02E−05
1.10
5.74E−03


CYP11A1
−1.32
3.22E−03
−1.16E+00 
8.76E−04
5.14E−05
−2.26
5.75E−03


RPSA
−0.37
8.85E−06
1.18E−16
1.00E+00
5.16E−05
−0.37
5.75E−03


CYSTM1
0.95
6.59E−05
1.16E+00
5.00E−02
5.10E−05
1.46
5.75E−03


TNFSF9
1.64
1.28E−03
1.11E+00
2.26E−03
5.29E−05
1.75
5.84E−03


TNFAIP3
1.07
6.62E−04
1.44E+00
4.54E−03
5.41E−05
1.80
5.93E−03


CD3E
−0.86
9.85E−06
1.18E−16
1.00E+00
5.71E−05
−0.86
6.19E−03


SDF2
0.81
4.79E−04
2.03E+00
6.77E−03
5.74E−05
1.40
6.19E−03


SDC4
0.14
7.01E−01
1.66E+00
1.08E−05
5.81E−05
1.64
6.21E−03


CRIP1
0.77
2.08E−04
2.53E+00
1.76E−02
6.17E−05
1.06
6.49E−03


MYLK
1.04
5.23E−01
2.95E+00
1.32E−05
6.15E−05
0.31
6.49E−03


GATM
1.41
1.91E−04
1.05E+00
2.04E−02
6.45E−05
2.05
6.73E−03


ACTR2
0.50
1.13E−05
1.18E−16
1.00E+00
6.52E−05
0.50
6.75E−03


RPGRIP1
0.56
2.42E−02
1.40E+00
1.67E−04
6.60E−05
1.24
6.78E−03


REPS1
−0.86
1.72E−02
−1.31E+00 
2.49E−04
7.13E−05
−1.40
7.27E−03


TNFRSF18
−0.86
1.25E−05
1.18E−16
1.00E+00
7.18E−05
−0.86
7.27E−03


PLAGL2
−0.86
1.47E−05
7.98E−01
6.56E−01
7.56E−05
−0.84
7.59E−03


KHSRP
−0.96
1.61E−05
−2.22E−01 
5.67E−01
7.74E−05
−0.76
7.71E−03


GATA3
−1.00
7.13E−04
−2.28E+00 
6.31E−03
7.82E−05
−1.45
7.73E−03


TRAT1
−0.68
5.61E−02
−1.42E+00 
9.49E−05
7.93E−05
−2.63
7.78E−03


APOA1BP
0.83
1.24E−04
1.27E+00
4.22E−02
8.05E−05
1.34
7.79E−03


ATXN2L
−1.01
1.41E−05
−1.13E−02 
9.57E−01
8.05E−05
−1.00
7.79E−03


POU2AF1
−0.39
6.49E−01
−2.32E+00 
1.64E−05
8.38E−05
−0.59
8.04E−03


CCR8
−1.04
5.80E−03
−1.52E+00 
8.50E−04
8.52E−05
−2.45
8.12E−03


SRRM1
−0.65
1.58E−05
1.18E−16
1.00E+00
8.99E−05
−0.64
8.51E−03


GNGT2
0.89
1.03E−04
9.36E−01
6.18E−02
9.32E−05
1.58
8.76E−03


RERE
−0.45
5.12E−02
−1.76E+00 
1.26E−04
9.63E−05
−1.18
8.98E−03


ZFP467
0.60
2.73E−01
−1.77E+00 
3.25E−05
9.75E−05
−0.89
9.03E−03


LMNA
0.88
2.02E−02
1.28E+00
3.19E−04
1.03E−04
2.10
9.52E−03


AMICA1
−1.37
1.44E−01
−2.19E+00 
5.69E−05
1.04E−04
−1.17
9.52E−03


KLF6
0.68
4.05E−03
1.70E+00
1.52E−03
1.06E−04
1.71
9.57E−03


ASB2
−1.17
3.00E−02
−1.29E+00 
2.45E−04
1.14E−04
−1.78
1.03E−02


UBR4
−0.82
3.59E−05
1.45E+00
3.06E−01
1.16E−04
−0.78
1.04E−02


RPS27
0.35
2.09E−05
1.18E−16
1.00E+00
1.17E−04
0.35
1.04E−02


ABCB9
−0.82
1.64E−02
−1.23E+00 
4.46E−04
1.18E−04
−1.71
1.04E−02


RORC
0.75
5.29E−02
1.34E+00
1.57E−04
1.22E−04
1.88
1.07E−02


CCDC88C
−0.86
5.25E−05
5.04E−01
2.18E−01
1.31E−04
−0.43
1.14E−02


TRIM56
−0.26
2.35E−01
−1.50E+00 
5.28E−05
1.39E−04
−0.63
1.20E−02


LAMA5
−0.90
3.98E−04
−1.16E+00 
2.23E−02
1.39E−04
−1.22
1.20E−02


EIF3F
−0.83
2.56E−05
1.18E−16
1.00E+00
1.42E−04
−0.83
1.21E−02


STOM
0.04
9.29E−01
1.56E+00
2.69E−05
1.48E−04
2.01
1.25E−02


BEND4
0.27
4.95E−01
1.50E+00
3.42E−05
1.48E−04
1.17
1.25E−02


ITPRIPL1
0.83
2.84E−05
8.11E−01
7.68E−01
1.50E−04
0.84
1.25E−02


CDKN2D
0.74
5.62E−05
9.31E−01
2.38E−01
1.49E−04
1.00
1.25E−02


CCR4
−0.95
1.33E−04
−9.50E−01 
8.34E−02
1.51E−04
−1.32
1.25E−02


KMT2A
−0.77
8.23E−05
−7.95E−01 
1.57E−01
1.58E−04
−0.87
1.30E−02


MT1
0.93
2.33E−03
1.66E+00
4.34E−03
1.66E−04
1.64
1.35E−02


NUBP1
−0.89
3.11E−05
−8.06E−02 
8.41E−01
1.68E−04
−0.80
1.35E−02


MAP3K1
0.80
2.08E−04
1.12E+00
5.68E−02
1.68E−04
0.98
1.35E−02


RPS12
−0.41
3.11E−05
1.18E−16
1.00E+00
1.71E−04
−0.41
1.37E−02


DTWD1
1.39
3.72E−05
2.58E−01
5.97E−01
1.76E−04
1.23
1.40E−02


GTF2IRD1
−0.14
7.41E−01
−1.56E+00 
3.48E−05
1.80E−04
−0.68
1.43E−02


USMG5
0.49
3.33E−05
1.18E−16
1.00E+00
1.82E−04
0.49
1.44E−02


DNMT3A
−0.90
1.41E−04
−8.99E−01 
1.02E−01
1.87E−04
−1.05
1.47E−02


PERP
0.68
7.71E−02
1.47E+00
1.86E−04
1.94E−04
2.44
1.51E−02


EGFR
−0.45
3.58E−01
1.47E+00
5.65E−05
1.97E−04
1.39
1.53E−02


ASAH2

1.00E+00
3.37E+00
2.00E−04
2.00E−04

1.53E−02


TNIP2
0.97
3.43E−04
1.28E+00
4.15E−02
2.06E−04
1.42
1.57E−02


RND1
0.83
3.29E−02
1.27E+00
4.41E−04
2.14E−04
1.25
1.62E−02


SYTL1
−0.15
6.14E−01
−1.50E+00 
4.64E−05
2.20E−04
−1.96
1.66E−02


TCEB1
0.63
4.33E−05
1.18E−16
1.00E+00
2.34E−04
0.63
1.76E−02


FERMT3
0.66
4.42E−05
1.18E−16
1.00E+00
2.39E−04
0.66
1.78E−02


BYSL
0.71
4.90E−03
2.16E+00
3.08E−03
2.39E−04
1.33
1.78E−02


TWF1
0.85
1.64E−04
1.16E+00
1.16E−01
2.41E−04
1.13
1.78E−02


EIF4EBP2
−0.90
5.11E−03
−1.11E+00 
3.03E−03
2.45E−04
−1.71
1.80E−02


DIAPH1
−0.71
5.96E−03
−1.30E+00 
2.62E−03
2.46E−04
−1.31
1.80E−02


RPS20
−0.37
4.64E−05
1.18E−16
1.00E+00
2.50E−04
−0.37
1.81E−02


FYB
−0.74
1.07E−04
−1.21E+00 
2.11E−01
2.53E−04
−0.85
1.83E−02


EP300
−0.62
5.27E−03
−1.58E+00 
3.17E−03
2.62E−04
−1.06
1.88E−02


CHD4
−0.71
6.06E−05
−6.09E−01 
5.41E−01
2.67E−04
−0.72
1.89E−02


SETD5
−0.90
1.53E−04
−1.01E+00 
1.44E−01
2.66E−04
−1.01
1.89E−02


CAPN3
−3.22
4.49E−02
−2.50E+00 
4.20E−04
2.66E−04
−0.62
1.89E−02


FAM60A
1.06
6.50E−05
8.04E−01
4.82E−01
2.68E−04
1.15
1.89E−02


TRBC2
−0.94
6.01E−05
−6.29E−01 
5.67E−01
2.71E−04
−1.03
1.89E−02


FAM102A
−0.20
5.55E−01
−1.44E+00 
6.60E−05
2.93E−04
−1.44
2.04E−02


KPNA2
0.72
1.33E−04
1.25E+00
1.97E−01
2.95E−04
0.89
2.04E−02


HN1
0.57
5.69E−05
1.18E−16
1.00E+00
3.03E−04
0.57
2.06E−02


CHURC1
0.74
5.63E−05
1.18E−16
1.00E+00
3.00E−04
0.74
2.06E−02


GPR83
−1.30
1.01E−02
−1.10E+00 
1.94E−03
3.02E−04
−1.51
2.06E−02


BCL2A1B
−1.05
2.94E−04
−6.65E−01 
8.05E−02
3.10E−04
−1.67
2.08E−02


GSG1L

1.00E+00
−3.15E+00 
3.11E−04
3.11E−04

2.08E−02


SMG7
−0.76
1.80E−03
−1.42E+00 
1.14E−02
3.12E−04
−1.11
2.08E−02


ATRNL1
2.19
1.61E−03
1.24E+00
1.28E−02
3.11E−04
0.48
2.08E−02


MYL12A
0.47
5.92E−05
1.18E−16
1.00E+00
3.15E−04
0.47
2.09E−02


GGNBP2
−0.85
2.13E−04
−9.13E−01 
1.22E−01
3.19E−04
−1.05
2.11E−02


VEZT
−0.87
1.85E−04
5.14E−01
1.49E−01
3.26E−04
−0.12
2.14E−02


D930015E06RIK
−0.81
7.05E−03
−1.10E+00 
3.04E−03
3.29E−04
−1.30
2.15E−02


LRRC2
0.25
2.79E−02
1.24E+00
8.23E−04
3.32E−04
0.39
2.16E−02


PNO1
0.23
3.17E−01
3.35E+00
1.07E−04
3.35E−04
0.92
2.17E−02


HSF2
0.78
5.33E−03
1.68E+00
4.15E−03
3.39E−04
1.29
2.18E−02


SCOC
0.87
3.39E−04
6.47E−01
7.71E−02
3.41E−04
1.27
2.19E−02


MED12
−0.83
6.61E−05
−5.86E−02 
8.75E−01
3.45E−04
−0.79
2.20E−02


COTL1
−0.80
7.53E−05
8.72E−01
6.20E−01
3.49E−04
−0.78
2.22E−02


ATP6V0E
0.56
6.84E−05
5.76E−01
8.26E−01
3.52E−04
0.57
2.23E−02


ZHX1
−0.21
4.28E−01
2.10E+00
9.70E−05
3.67E−04
0.78
2.30E−02


PRPF19
−0.77
1.69E−04
6.25E−01
1.95E−01
3.67E−04
−0.53
2.30E−02


EEF1D
0.47
7.05E−05
1.18E−16
1.00E+00
3.71E−04
0.47
2.30E−02


NUP210
−0.73
3.74E−04
−2.13E+00 
7.63E−02
3.71E−04
−0.81
2.30E−02


CHMP5
0.62
1.20E−04
1.49E+00
3.24E−01
3.77E−04
0.70
2.31E−02


SUPT4A
0.60
2.76E−04
−1.76E+00 
1.11E−01
3.77E−04
0.52
2.31E−02


NEDD8
0.54
7.51E−05
7.81E−01
7.54E−01
3.75E−04
0.56
2.31E−02


EZH2
−1.08
2.16E−04
−7.60E−01 
1.53E−01
3.84E−04
−1.27
2.34E−02


TESC
−0.36
2.94E−01
−1.37E+00 
1.41E−04
4.10E−04
−1.94
2.49E−02


DYNLT1C
1.08
8.26E−05
2.83E−01
8.06E−01
4.18E−04
1.11
2.52E−02


BRMS1
0.81
1.82E−04
6.85E−01
2.19E−01
4.27E−04
1.14
2.55E−02


RAB24
−1.12
1.67E−04
−3.93E−01 
2.46E−01
4.27E−04
−0.82
2.55E−02


KDELR2
0.77
8.27E−05
1.18E−16
1.00E+00
4.32E−04
0.77
2.57E−02


CDC37
0.35
8.35E−05
1.18E−16
1.00E+00
4.35E−04
0.35
2.58E−02


AKNA
−0.59
1.64E−02
−2.16E+00 
1.85E−03
4.40E−04
−1.09
2.60E−02


TUBA1C
0.52
1.23E−02
1.97E+00
2.50E−03
4.51E−04
1.05
2.65E−02


AHCY
−0.73
1.60E−04
−1.46E+00 
2.97E−01
4.67E−04
−0.79
2.73E−02


MCTP2
−0.14
7.16E−01
1.49E+00
9.93E−05
4.80E−04
1.06
2.79E−02


NDUFB8
−0.60
1.27E−04
1.15E+00
4.46E−01
4.84E−04
−0.55
2.80E−02


SHTN1
−1.08
5.43E−02
−1.57E+00 
7.17E−04
5.13E−04
−0.56
2.96E−02


DPYSL2
0.78
1.59E−04
−1.32E+00 
3.48E−01
5.16E−04
0.75
2.96E−02


PLEKHJ1
0.51
1.74E−03
2.47E+00
2.11E−02
5.20E−04
0.77
2.97E−02


MED14
−0.22
5.51E−01
−1.36E+00 
1.25E−04
5.34E−04
−1.00
3.04E−02


SNHG11
0.47
6.03E−04
7.75E−01
6.99E−02
5.39E−04
0.48
3.05E−02


H1F0
−1.14
3.26E−04
−5.40E−01 
1.47E−01
5.49E−04
−1.24
3.10E−02


AAK1
−0.80
1.08E−04
−1.06E−02 
9.64E−01
5.56E−04
−0.63
3.11E−02


ATP1A1
−0.87
1.32E−03
−8.58E−01 
3.04E−02
5.54E−04
−1.23
3.11E−02


STXBP3
0.84
5.13E−04
6.72E−01
8.82E−02
5.60E−04
1.30
3.12E−02


SKIV2L
−0.60
2.38E−03
1.21E+00
1.66E−02
5.62E−04
0.15
3.12E−02


TMEM8B
−0.91
2.72E−01
−2.01E+00 
2.15E−04
5.80E−04
−0.19
3.18E−02


H2-Q4
−1.06
1.17E−04
2.15E−01
7.99E−01
5.80E−04
−1.02
3.18E−02


HCN3
−0.44
7.55E−01
2.71E+00
1.19E−04
5.80E−04
0.53
3.18E−02


GPR18
0.80
9.91E−03
1.14E+00
4.10E−03
5.84E−04
2.01
3.18E−02


NAA15
−0.81
9.38E−04
−1.14E+00 
4.75E−02
5.89E−04
−1.10
3.20E−02


GALE
0.70
9.38E−04
1.11E+00
4.77E−02
5.92E−04
1.34
3.20E−02


SEC61G
0.53
1.16E−04
1.18E−16
1.00E+00
5.94E−04
0.53
3.20E−02


MLLT3
−1.01
1.64E−04
−3.61E−01 
4.23E−01
5.97E−04
−0.98
3.20E−02


TRIM28
−0.68
1.40E−03
−1.32E+00 
3.17E−02
6.04E−04
−1.06
3.23E−02


CHP1
0.72
1.21E−04
1.95E−01
1.00E+00
6.23E−04
0.73
3.27E−02


ECHDC1
0.82
6.67E−03
1.11E+00
6.45E−03
6.18E−04
1.67
3.27E−02


SLC39A8
0.52
2.11E−01
1.28E+00
2.79E−04
6.20E−04
1.50
3.27E−02


ZFAND5
−0.68
4.48E−02
−1.17E+00 
1.05E−03
6.23E−04
−1.09
3.27E−02


ANP32B
−0.93
4.10E−04
−1.18E+00 
1.30E−01
6.19E−04
−1.07
3.27E−02


RAP1A
−0.66
1.28E−04
−1.72E−01 
8.12E−01
6.33E−04
−0.66
3.29E−02


ZMIZ1
−0.84
1.40E−04
−2.37E−01 
6.31E−01
6.33E−04
−0.82
3.29E−02


PLSCR1
0.96
2.18E−04
6.32E−01
3.04E−01
6.36E−04
1.14
3.29E−02


YTHDF3
−1.16
1.38E−04
1.10E−01
7.99E−01
6.76E−04
−0.78
3.48E−02


RAB11FIP4
1.05
9.02E−02
−1.48E+00 
6.34E−04
6.94E−04
−0.42
3.57E−02


D830030K20RIK

1.00E+00
−3.19E+00 
7.00E−04
7.00E−04

3.58E−02


BC031181
0.68
3.93E−04
1.78E+00
1.63E−01
7.07E−04
0.79
3.61E−02


GNPDA2
1.13
2.65E−04
4.75E−01
2.81E−01
7.21E−04
1.36
3.66E−02


SLC12A7
0.54
8.12E−02
1.18E+00
7.33E−04
7.30E−04
1.26
3.68E−02


MAGED1
1.04
3.85E−02
−1.66E+00 
1.44E−03
7.30E−04
−0.54
3.68E−02


ALKBH5
0.77
4.01E−04
1.74E+00
1.72E−01
7.49E−04
0.81
3.76E−02


CYSLTR2
0.83
1.11E−02
1.26E+00
4.91E−03
7.59E−04
1.78
3.78E−02


ZIC5

1.00E+00
3.09E+00
7.59E−04
7.59E−04

3.78E−02


CD209C
−0.29
2.68E−01
1.29E+00
2.92E−04
7.65E−04
0.54
3.78E−02


TNFRSF4
−0.73
5.37E−04
−1.91E+00 
1.23E−01
7.62E−04
−0.88
3.78E−02


SLC4A11
0.34
2.54E−01
1.47E+00
3.05E−04
7.70E−04
1.85
3.79E−02


KLHL6
0.94
3.90E−04
9.03E−01
1.87E−01
7.75E−04
1.25
3.81E−02


BCKDHA
0.65
5.10E−03
1.09E+00
1.14E−02
8.03E−04
1.54
3.90E−02


TANGO2
0.92
1.96E−02
1.07E+00
3.00E−03
8.04E−04
1.81
3.90E−02


TREX1
0.55
2.54E−02
1.90E+00
2.33E−03
8.01E−04
1.63
3.90E−02


CTXN1
0.40
7.00E−01
2.16E+00
1.75E−04
8.14E−04
0.74
3.94E−02


ERCC4
0.95
1.85E−03
−8.03E−01 
3.37E−02
8.23E−04
0.28
3.96E−02


LFNG
−0.37
6.72E−01
−1.91E+00 
1.83E−04
8.36E−04
−0.52
4.01E−02


UCK2
−0.87
1.45E−03
−1.19E+00 
4.55E−02
8.48E−04
−1.31
4.05E−02


MRGPRA6
−0.36
1.70E−04
1.18E−16
1.00E+00
8.52E−04
−0.36
4.06E−02


SLAIN1
−1.15
7.18E−03
−9.75E−01 
8.68E−03
8.61E−04
−0.96
4.09E−02


EML3
−0.75
6.28E−03
1.15E+00
1.01E−02
8.73E−04
0.11
4.13E−02


ACOT8
0.42
1.14E−01
1.37E+00
6.76E−04
8.90E−04
1.70
4.16E−02


LAMP1
−0.82
4.20E−03
−1.04E+00 
1.57E−02
8.98E−04
−1.61
4.16E−02


BRCA2
−0.86
9.09E−03
−1.08E+00 
7.19E−03
8.98E−04
−0.76
4.16E−02


RPS6KA4
−0.01
9.74E−01
1.52E+00
1.79E−04
8.93E−04
1.38
4.16E−02


HIST1H1E
−0.71
7.99E−03
−9.86E−01 
8.16E−03
8.97E−04
−1.58
4.16E−02


PAPSS2
2.10
2.19E−04
−2.67E−01 
5.30E−01
8.88E−04
0.23
4.16E−02


EIF5B
−0.54
1.81E−04
4.15E−01
1.00E+00
9.04E−04
−0.54
4.17E−02


SMC4
−0.86
1.83E−04
1.26E−01
9.93E−01
9.12E−04
−0.83
4.19E−02


TLR7

1.00E+00
−3.06E+00 
9.19E−04
9.19E−04

4.21E−02


MTA1
−0.79
6.77E−04
−6.03E−01 
1.19E−01
9.23E−04
−0.92
4.21E−02


SEC23B
0.81
1.93E−04
−8.51E−02 
8.05E−01
9.32E−04
0.77
4.23E−02


RN7S2
−0.79
2.03E−04
−1.49E−01 
7.01E−01
9.35E−04
−0.71
4.23E−02


RN7S1
−0.79
2.03E−04
−1.49E−01 
7.01E−01
9.35E−04
−0.71
4.23E−02


CHRNA1
0.45
4.87E−04
5.16E−01
1.82E−01
9.39E−04
0.45
4.23E−02


ANKRD17
−0.79
2.20E−04
−3.57E−01 
6.03E−01
9.47E−04
−0.80
4.25E−02


CTS8-PS

1.00E+00
−3.09E+00 
9.50E−04
9.50E−04

4.25E−02


HUWE1
−0.64
2.71E−04
−1.16E+00 
4.23E−01
9.58E−04
−0.65
4.26E−02


SLC43A1
−3.09
1.49E−01
−2.43E+00 
5.84E−04
9.55E−04
−0.50
4.26E−02


SLC43A2
−0.04
9.01E−01
−1.36E+00 
1.97E−04
9.71E−04
−0.71
4.30E−02


PRR12
−0.34
2.00E−01
−1.28E+00 
4.72E−04
9.77E−04
−0.58
4.31E−02


1110037F02RIK
−0.98
2.90E−04
−3.06E−01 
4.04E−01
9.94E−04
−0.86
4.37E−02


ATP10D
0.12
7.14E−01
1.32E+00
2.19E−04
1.01E−03
0.83
4.43E−02


HPCAL4

1.00E+00
3.01E+00
1.03E−03
1.03E−03

4.51E−02


CPSF4
−0.98
2.33E−04
−1.80E−01 
6.61E−01
1.04E−03
−0.89
4.53E−02


FGF2
−0.70
7.29E−01
−2.62E+00 
2.26E−04
1.05E−03
−0.51
4.54E−02


HNRNPAB
−0.84
6.61E−04
−1.02E+00 
1.46E−01
1.05E−03
−1.05
4.55E−02


SOX5
−0.23
4.26E−01
1.35E+00
3.02E−04
1.06E−03
0.62
4.59E−02


ENSA
0.63
2.62E−02
1.48E+00
3.15E−03
1.08E−03
1.25
4.64E−02


DOK2
−0.70
1.51E−02
−1.69E+00 
5.36E−03
1.08E−03
−1.45
4.64E−02


ZFP622
−0.97
2.42E−03
−7.35E−01 
3.58E−02
1.11E−03
−1.02
4.72E−02


TUBB4B
0.48
2.84E−03
2.37E+00
3.01E−02
1.11E−03
0.74
4.72E−02


PRKCB
−0.24
4.15E−01
−1.33E+00 
3.24E−04
1.12E−03
−1.06
4.74E−02


NUDT3
0.51
2.26E−02
2.78E+00
3.77E−03
1.12E−03
0.80
4.74E−02


FABP5
0.77
4.00E−04
−8.10E−01 
3.08E−01
1.13E−03
0.62
4.76E−02


SLC15A3
1.09
1.42E−03
9.35E−01
6.62E−02
1.14E−03
1.70
4.78E−02


CCNT1
−0.83
7.75E−04
7.48E−01
1.34E−01
1.14E−03
−0.16
4.78E−02


SYMPK
−0.68
5.07E−03
−1.21E+00 
1.70E−02
1.14E−03
−1.02
4.78E−02


STK11
−0.97
5.46E−04
4.53E−01
2.11E−01
1.16E−03
−0.15
4.83E−02


PON3
2.13
8.53E−04
8.38E−01
1.26E−01
1.19E−03
0.35
4.95E−02


PGLYRP2
−1.12
3.78E−02
−1.23E+00 
2.50E−03
1.20E−03
−1.15
4.95E−02


VEZF1
−0.84
3.05E−03
−8.57E−01 
3.14E−02
1.23E−03
−1.17
5.05E−02


KMO

1.00E+00
−3.13E+00 
1.24E−03
1.24E−03

5.08E−02


PAIP1
0.68
1.90E−03
1.14E+00
5.34E−02
1.25E−03
0.96
5.09E−02


LRRN4CL
−0.28
5.48E−02
−1.08E+00 
1.86E−03
1.25E−03
−0.42
5.09E−02


CYTIP
0.55
2.56E−04
1.18E−16
1.00E+00
1.25E−03
0.55
5.09E−02


TPST1
−0.71
3.56E−01
−1.63E+00 
4.11E−04
1.27E−03
−0.76
5.15E−02


HNRNPU
−0.76
4.24E−04
−9.77E−01 
3.40E−01
1.27E−03
−0.80
5.15E−02


CXCR2
0.64
2.68E−04
2.88E−01
8.27E−01
1.28E−03
0.65
5.15E−02


PHGDH
−0.70
2.90E−04
7.78E−01
6.87E−01
1.30E−03
−0.68
5.18E−02


SLAMF6
−0.06
9.38E−01
−1.37E+00 
2.67E−04
1.30E−03
−1.39
5.18E−02


DNTTIP1
−1.28
7.47E−04
−5.04E−01 
1.65E−01
1.29E−03
−0.71
5.18E−02


GZMB
0.44
5.20E−01
−1.59E+00 
3.33E−04
1.30E−03
−0.98
5.19E−02


MRPL27
0.75
2.37E−03
1.44E+00
4.44E−02
1.31E−03
1.10
5.19E−02


FBXO46
−0.90
1.84E−03
7.61E−01
5.92E−02
1.32E−03
−0.15
5.22E−02


CCDC63
−0.46
2.96E−01
1.33E+00
4.91E−04
1.33E−03
0.85
5.26E−02


CELF1
−0.75
3.95E−04
−8.32E−01 
4.12E−01
1.34E−03
−0.77
5.28E−02


TCF20
−0.74
8.17E−04
−1.41E+00 
1.59E−01
1.37E−03
−0.79
5.37E−02


TRIM17

1.00E+00
−3.03E+00 
1.38E−03
1.38E−03

5.40E−02


IL10RA
−0.19
6.76E−01
−1.25E+00 
3.13E−04
1.38E−03
−1.39
5.40E−02


TPD52
0.28
1.86E−01
3.03E+00
7.30E−04
1.39E−03
0.90
5.41E−02


PTPN1
0.65
5.36E−04
1.50E+00
2.87E−01
1.42E−03
0.71
5.49E−02


CREBBP
−0.82
5.38E−04
−4.53E−01 
2.89E−01
1.43E−03
−0.87
5.53E−02


ZFP704
−0.17
8.59E−01
−2.49E+00 
3.01E−04
1.43E−03
−0.05
5.53E−02


MCUR1
−1.13
3.33E−04
−1.34E−01 
6.80E−01
1.47E−03
−0.52
5.63E−02


TUBB6
0.76
1.88E−02
1.17E+00
6.06E−03
1.46E−03
1.92
5.63E−02


TAF2
−0.66
1.42E−02
−9.90E−01 
8.02E−03
1.47E−03
−1.09
5.64E−02


NT5C
0.55
4.46E−04
1.21E+00
4.06E−01
1.49E−03
0.59
5.64E−02


S100A13
0.51
1.38E−02
2.62E+00
8.34E−03
1.48E−03
0.98
5.64E−02


KMT2C
−0.74
5.12E−04
−4.10E−01 
3.30E−01
1.49E−03
−0.72
5.64E−02


PPP6C
0.63
1.71E−03
1.55E+00
7.58E−02
1.51E−03
0.86
5.69E−02


SRGN
0.53
3.13E−04
1.18E−16
1.00E+00
1.51E−03
0.53
5.69E−02


AHDC1
−0.02
9.47E−01
−1.29E+00 
3.13E−04
1.51E−03
−0.48
5.69E−02


GDPD2

1.00E+00
3.28E+00
1.52E−03
1.52E−03

5.71E−02


ZFP65
−0.51
3.22E−04
1.18E−16
1.00E+00
1.55E−03
−0.51
5.74E−02


FBXO22
1.18
4.01E−04
3.00E−01
5.23E−01
1.55E−03
1.17
5.74E−02


TRAPPC2L
0.67
5.55E−03
1.10E+00
2.22E−02
1.57E−03
1.60
5.74E−02


EPAS1
−1.29
1.26E−02
−9.26E−01 
9.68E−03
1.57E−03
−1.01
5.74E−02


RELT
0.03
9.46E−01
−1.31E+00 
3.23E−04
1.55E−03
−1.21
5.74E−02


RXRA
−0.32
5.82E−01
−1.32E+00 
3.81E−04
1.56E−03
−0.98
5.74E−02


ZFP41
0.33
4.82E−01
−1.55E+00 
4.16E−04
1.54E−03
−0.84
5.74E−02


MYL6
0.35
3.25E−04
1.18E−16
1.00E+00
1.56E−03
0.34
5.74E−02


RPL5
−0.22
3.27E−04
1.18E−16
1.00E+00
1.57E−03
−0.22
5.74E−02


SNX3
−0.39
3.30E−04
1.18E−16
1.00E+00
1.59E−03
−0.39
5.79E−02


CCDC66
−1.26
3.42E−04
8.65E−02
8.23E−01
1.60E−03
−0.70
5.82E−02


DCLRE1C
0.78
5.07E−04
1.21E+00
3.86E−01
1.63E−03
0.80
5.90E−02


BAG6
−0.69
4.49E−04
−3.49E−01 
4.72E−01
1.63E−03
−0.75
5.91E−02


NSMCE4A
0.07
8.71E−01
−1.32E+00 
3.56E−04
1.68E−03
−1.22
5.94E−02


GOLT1B
0.77
1.12E−03
1.86E+00
1.43E−01
1.69E−03
0.88
5.94E−02


ACSL3
−1.01
4.95E−03
−7.79E−01 
2.73E−02
1.69E−03
−1.15
5.94E−02


CLIC5
1.70
2.11E−01
2.27E+00
7.99E−04
1.65E−03
0.25
5.94E−02


UBE3A
−0.68
2.13E−02
−1.18E+00 
6.15E−03
1.65E−03
−1.24
5.94E−02









Table 2A-2G. Tables related to the 10×, single-cell sequencing on T cells derived from the in-vivo mouse experiments. Table 2A-2F—results of Tissue vs. Tissue differential expression comparisons (both between-tissue comparisons and within-tissue, genotype comparisons) Table 2G—Tissue combined.


Table Description and Headings:


Spleen Ctrl vs KG: Genotype comparison between cells extracted from the Spleen. Positive log FC associated with higher expression in Ctrl cells (compared with KG Cells).


Colon LPL Ctrl vs KO: Genotype comparison between cells extracted from the Colon Lamina Propria. Positive log FC associated with higher expression in Ctrl cells (compared with KO Cells).


Small Intestine LPL Ctrl vs KO: Genotype comparison between cells extracted from the Small Intestine Lamina Propria. Positive log FC associated with higher expression in Ctrl cells (compared with KO Cells).


Colon IEL Ctrl vs KO: Genotype comparison between cells extracted from the Colon Epithelium. Positive log FC associated with higher expression in Ctrl cells (compared with KO Cells).


LPL vs Spleen: Comparison between cells taken from the Lamina Propria (Colon and Small Intestine) vs. Spleen. Positive log FC associated with higher expression in Lamina Propria.


IEL vs Spleen: Comparison between cells taken from the Colon Epithelium vs. Spleen. Positive log FC associated with higher expression in Colon Epithelium.


Tissue Combined: ANOVA-like test for tissue-specific expression. Tests the inclusion of all tissue coefficients simultaneously. Reference level—Spleen.


GeneID: Unique Ensembl identifier for the gene being tested


GeneSymbol: Common symbol used for this gene


log FC: log 2 coefficient of the linear model


log CPM: log 2 counts-per-million average expression


LR: likelihood ratio from which p-values are derived


PValue: Associated p-value for this gene's coefficient


FDR: Benjamini-Hochberg False Discover Rate









TABLE 2A







Spleen Ctrl vs KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















B2m
−0.394594818
12.75972879
1444.404623
0
0


Rpl8
0.468048248
11.72273016
1161.570028
 1.3719E−254
 1.0569E−250


Rpl18
0.434763597
11.79581946
1104.869146
 2.8881E−242
 1.4833E−238


Ifi2712a
−1.367469104
10.39056913
1082.936188
  1.689E−237
 6.5061E−234


Rpl14
0.467863321
11.90179131
999.0735997
 2.8552E−219
 8.7985E−216


Rpl18a
0.40844965
12.7923771
976.338732
 2.4971E−214
 6.4125E−211


Rps5
0.425613673
12.21232007
963.9572813
 1.2269E−211
 2.7005E−208


Rpl17
0.406079885
12.23488643
922.7043597
 1.1382E−202
 2.1922E−199


Tmsb10
−0.430569001
12.90243511
917.8571853
  1.288E−201
 2.2051E−198


Rpl13a
0.318130864
13.07963904
880.2603075
 1.9189E−193
 2.9566E−190


Rps6
0.387608536
12.2862602
879.5297959
  2.766E−193
 3.8744E−190


Ubb
−0.427975051
11.87538618
854.4454932
 7.8543E−188
 1.0085E−184


Rpl3
0.392996062
12.07431934
853.9654869
 9.9877E−188
 1.1838E−184


Rps18
0.441028555
12.56725217
846.7465436
 3.7058E−186
 4.0784E−183


Rps3
0.326489663
11.9717569
804.8381021
 4.7882E−177
 4.9185E−174


Rps14
0.361847774
12.58774591
790.9068962
 5.1178E−174
 4.9284E−171


Rpl29
0.403548785
11.32743279
789.2408217
 1.1785E−173
 1.0681E−170


Hbb-bs
−1.322316458
9.139899255
774.1781884
 2.2197E−170
 1.9001E−167


Rps23
0.366380189
12.42732913
772.3794594
 5.4626E−170
 4.4298E−167


Rpl32
0.342303232
12.55404626
755.0295723
 3.2344E−166
 2.4918E−163


Pfn1
−0.384163523
12.60884857
710.1081556
 1.8951E−156
 1.3905E−153


Rplp0
0.316020006
12.54798341
706.666425
 1.0618E−155
 7.4367E−153


Rpl24
0.345910071
11.74324764
701.1303805
 1.6978E−154
 1.1374E−151


Rpl21
0.351304057
11.78074345
696.9180321
 1.3993E−153
 8.9833E−151


Rpl13
0.383449286
12.64381099
695.1792673
  3.342E−153
 2.0598E−150


Rps24
0.387091918
11.96746781
683.7521651
 1.0208E−150
 6.0497E−148


Rpl10a
0.399442811
11.25682159
681.0036857
 4.0426E−150
  2.307E−147


Il7r
1.03867114
9.716667054
678.6930989
 1.2857E−149
 7.0749E−147


Rps4x
0.331978848
11.96044745
670.9400055
  6.24E−148
 3.3154E−145


Rpl19
0.284781004
12.05752888
636.4445613
 1.9824E−140
 1.0182E−137


AW112010
−0.543245425
11.59018241
633.9186211
 7.0236E−140
  3.491E−137


Rpl4
0.314340007
11.74124626
627.5348359
 1.7178E−138
 8.2712E−136


Rps19
0.395757239
12.83023757
615.6591388
 6.5748E−136
 3.0698E−133


Rps7
0.354149685
12.00850254
606.9322923
 5.1998E−134
 2.3564E−131


Rps3a1
0.299122173
11.79361689
588.9227548
 4.2976E−130
 1.8919E−127


Rps9
0.332982718
11.94213912
586.8353858
 1.2225E−129
 5.2324E−127


Rpl23a
0.320735899
12.0892703
578.7802504
 6.9088E−128
  2.877E−125


Rpl12
0.50132843
10.9317396
576.0114318
 2.7649E−127
 1.1211E−124


Tmsb4x
−0.270263653
14.50537537
568.0807108
 1.4683E−125
 5.8009E−123


Rpl23
0.338209227
11.6086807
556.8680667
 4.0357E−123
 1.5546E−120


Rps13
0.303056725
11.84034228
550.8608727
 8.1793E−122
 3.0738E−119


mt-Co1
0.322058669
12.25832103
542.7662554
 4.7167E−120
 1.7304E−117


Rps10
0.322943166
11.23934257
537.8337752
 5.5807E−119
 1.9997E−116


Rsrp1
−0.547900074
10.29205708
531.868532
 1.1077E−117
 3.8791E−115


Rpl26
0.317557283
11.55435837
530.2211529
 2.5283E−117
  8.657E−115


Rps15a
0.328204873
12.2017224
529.9491858
 2.8974E−117
 9.7049E−115


Rpl6
0.299225556
11.6914612
522.7460832
 1.0693E−115
 3.5055E−113


Rpl30
0.376508954
10.91773473
522.2066548
 1.4011E−115
 4.4974E−113


Rplp1
0.335197804
11.71666386
510.0333892
 6.2366E−113
 1.9611E−110


Rps2
0.358100913
11.64912595
488.7668525
 2.6432E−108
 8.1453E−106


Hba-a1
−0.920500794
9.095022031
476.6698426
 1.1334E−105
 3.4242E−103


Rps8
0.286460085
11.80270255
474.8469891
 2.8251E−105
 8.3711E−103


Rpsa
0.273857677
11.6751798
471.4739516
 1.5312E−104
 4.4514E−102


Rps16
0.275293093
12.28556335
448.530665
 1.5062E−99
4.29771E−97


Rpl36a
0.442909207
10.94274968
446.158868
 4.9438E−99
1.38498E−96


Sh3bgrl3
−0.341561055
11.40559323
440.3930387
8.89009E−98
2.44604E−95


Rpl27a
0.294504688
11.64048213
438.3535946
2.47041E−97
6.67791E−95


Cfl1
−0.314322281
11.4854451
437.6224597
3.56364E−97
9.46699E−95


Sub1
−0.411655331
10.76071441
436.4866305
6.29648E−97
1.64434E−94


Myl6
−0.314779512
11.36366325
433.2092611
3.25386E−96
8.35591E−94


Hspa1a
−1.336716152
9.242931161
430.8805791
1.04527E−95
2.64026E−93


Rpl34
0.278104357
11.77163488
430.4209651
1.31603E−95
3.27054E−93


Hnrnpa3
−0.464034776
10.23003684
427.6656651
5.23551E−95
1.28046E−92


Eef2
0.294044382
11.17784701
424.7944526
2.20745E−94
5.31444E−92


Gnb2l1
0.351421332
10.53545348
417.6969993
7.73971E−93
1.83467E−90


Prdx1
−0.443893585
10.25016103
405.1065332
4.25916E−90
 9.9432E−88


Rps12
0.392808532
10.82428255
404.9917445
 4.5114E−90
1.03749E−87


Eef1b2
0.464170287
10.11001442
404.8440126
4.85814E−90
 1.1008E−87


Rplp2
0.281131176
11.78981311
403.697428
8.63098E−90
1.92734E−87


Rps27a
0.272166684
11.85785907
403.2559785
1.07685E−89
2.37031E−87


Eef1a1
0.230267534
12.30506479
395.0564055
6.56311E−88
1.42429E−85


Serf2
−0.294324233
10.78514217
392.1550889
2.81006E−87
6.01352E−85


Rpl11
0.246557229
11.72200823
387.7373487
2.57314E−86
5.43108E−84


Rps20
0.363934892
11.13696988
381.8405125
4.94601E−85
1.02984E−82


Rps11
0.226974358
12.39603371
378.4530376
2.70247E−84
5.55196E−82


Hspa1b
−0.944735319
9.137289838
356.5410016
1.59507E−79
 3.2338E−77


Rpl5
0.359361035
10.54545781
341.8660149
2.50316E−76
5.00892E−74


Ms4a4b
−0.306121376
11.83323511
339.3968419
8.63432E−76
1.70561E−73


Hmgn2
−0.9381794
9.557710879
338.9838185
1.06213E−75
2.07156E−73


S100a11
−0.412995978
10.68782699
337.6388092
2.08498E−75
4.01566E−73


Cd3e
−0.387729698
10.30595328
336.0488677
4.62777E−75
8.80304E−73


Hnrnpa2b1
−0.40798608
10.28844325
326.7138354
4.99493E−73
9.38559E−71


Rps25
0.270160344
11.11755248
325.1522005
1.09312E−72
2.02925E−70


Rpl36
0.292774874
11.53238972
323.7246145
2.23673E−72
4.10281E−70


Rpl9
0.249983812
11.74080817
321.4482229
7.00566E−72
1.26992E−69


Plac8
1.012302318
9.652571139
318.2423485
3.49751E−71
6.26624E−69


Tsc22d3
0.697894281
9.554940607
317.6897125
4.61464E−71
8.17268E−69


Myl12a
−0.335034242
10.60425227
314.7301327
2.03621E−70
3.56521E−68


Bcl2
0.906160685
9.588703364
313.2636118
4.24894E−70
7.35592E−68


Hmgb2
−0.696396429
11.06074981
311.7640665
9.01443E−70
1.54327E−67


Stat1
−0.697258014
9.534895283
306.4652959
1.28603E−68
2.17748E−66


Psme2
−0.393710072
10.13966069
300.8422195
2.15914E−67
3.61609E−65


Hba-a2
−0.676429421
9.081900495
299.835836
3.57715E−67
5.92653E−65


Hspa8
0.261320173
11.52981983
289.4131945
6.67446E−65
1.09404E−62


Tpt1
0.204354222
11.56490731
286.7839208
2.49646E−64
4.04899E−62


Acp5
0.600613336
9.490932375
273.4792682
1.97986E−61
3.17768E−59


Ms4a6b
−0.294195147
10.88050411
272.369232
3.45584E−61
5.48944E−59


Pdia3
−0.40435809
9.947067745
268.7935278
2.07901E−60
3.26871E−58


Cyba
−0.298957075
10.70076607
257.3695116
6.42556E−58
1.00005E−55


Rpl7
0.20397207
11.24994647
255.4080291
1.71985E−57
2.64994E−55


Dusp2
0.695936163
9.421733241
249.5519128
3.25182E−56
 4.9608E−54


Calm3
−0.457829973
9.738712517
249.1451719
3.98842E−56
6.02486E−54


Gm9844
−0.598681314
9.498462623
246.8932384
1.23526E−55
1.84785E−53


Cdc42
−0.266127107
10.66030324
245.2729444
2.78624E−55
4.12793E−53


Ppia
−0.24330961
11.96233228
242.3342812
1.21825E−54
 1.7877E−52


Hbb-bt
−0.498398902
9.069464739
241.8093712
1.58558E−54
2.30477E−52


Fau
0.185333561
12.0738768
241.4373304
 1.9112E−54
2.75213E−52


Rpl7a
0.267864394
10.57501611
239.9695494
3.99342E−54
5.69728E−52


Hsp90b1
−0.491697038
9.746474506
236.6017656
2.16618E−53
3.06206E−51


Eno1
−0.348932991
10.05496627
233.3201331
1.12538E−52
1.57635E−50


Ddit4
0.538960929
9.672816531
233.2496451
1.16592E−52
1.61843E−50


Ptma
−0.370972377
11.21833373
223.7026613
1.40854E−50
1.93775E−48


Ybx1
−0.285294787
10.48744422
222.7185656
2.30893E−50
3.14832E−48


H3f3b
−0.260942477
11.14558946
221.6453302
3.95823E−50
5.34986E−48


Itgb1
−0.666523293
10.23396472
220.1474805
8.39874E−50
1.12529E−47


Fxyd5
0.269233669
10.67479998
216.001067
6.74044E−49
8.95317E−47


Klf2
0.339556672
11.0136358
215.1873446
1.01437E−48
1.33585E−46


Gm10076
−0.558406186
9.458585833
213.9666957
1.87276E−48
2.44538E−46


Eef1g
0.293402137
10.47224312
211.2066869
7.49211E−48
9.70071E−46


Ifngr1
0.49965726
9.929229799
209.6778484
1.61492E−47
2.07355E−45


Ly6a
−0.341921357
10.6371311
209.1069354
2.15134E−47
2.73949E−45


Tmbim6
−0.296577287
10.12994397
206.583007
7.64514E−47
9.65543E−45


Anxa2
−0.517046321
10.04332864
202.0678195
7.38922E−46
9.25635E−44


Cd52
−0.210917208
12.51348717
195.7909614
1.73136E−44
2.15135E−42


Arl6ip1
−0.405136227
10.09908166
195.5723749
1.93238E−44
2.38192E−42


Ndufa3
−0.334866237
9.839878945
195.390331
2.11749E−44
2.58939E−42


Tuba1b
−0.67879043
10.00008493
195.1176906
2.42843E−44
2.94624E−42


Rtp4
−0.793831448
9.147652434
194.6736275
3.03559E−44
3.65409E−42


Capg
−0.495718911
9.935583727
193.4909519
5.50006E−44
6.56937E−42


Hnrnpdl
−0.50199538
9.362300942
193.1180335
6.63376E−44
7.86254E−42


Tma7
−0.269138523
10.19317796
189.7301451
3.64112E−43
4.28262E−41


Eif3f
0.233701824
10.65753688
188.392098
 7.1336E−43
8.32686E−41


Lgals1
−0.38078271
12.63361906
187.9718066
8.81159E−43
1.02082E−40


Rbm3
0.277674976
10.70166498
184.7747377
4.39516E−42
5.05378E−40


Uba52
−0.408087039
9.952856342
183.6984284
7.55001E−42
8.61708E−40


Sh2d1a
−0.491016053
9.642697413
179.860533
5.19842E−41
5.88951E−39


Ctla2a
0.588010327
9.748854778
179.6570959
5.75825E−41
6.47614E−39


Tap1
−0.415743191
9.53747222
178.4958846
1.03237E−40
1.15267E−38


Txn1
−0.325654396
10.05357118
176.6338416
2.63285E−40
2.91849E−38


Arl4c
0.407528267
9.783232926
176.3804994
2.99053E−40
3.29129E−38


Gltscr2
0.305069843
10.068061
174.8774404
6.36752E−40
6.95821E−38


Ccng1
−0.542528285
9.308847938
174.5743604
7.41577E−40
8.04663E−38


Cox7c
−0.258404342
10.16243436
174.2395106
8.77566E−40
9.45563E−38


Sec61g
−0.28454506
10.08219258
173.0412387
1.60311E−39
1.71533E−37


Psmb9
−0.349239421
9.782360113
172.413577
2.19805E−39
 2.3357E−37


Arhgdib
−0.188477383
11.23130777
172.327412
2.29539E−39
2.42242E−37


Rpl35a
0.170485936
11.73666243
171.8379009
2.93605E−39
3.07746E−37


Wdr1
−0.338161055
9.787807742
171.5059364
3.46947E−39
 3.612E−37


Itgb2
−0.319512386
10.05832132
170.556406
5.59298E−39
5.78366E−37


Atp5k
−0.362856145
9.63851564
164.5794993
1.13023E−37
1.16098E−35


Rabac1
0.405039787
9.640125814
162.7941386
2.77456E−37
2.83116E−35


Rps27rt
−0.447016904
10.76991423
162.249778
3.64854E−37
3.69847E−35


Alyref
−0.535399757
9.490162415
162.2144125
3.71404E−37
3.74025E−35


Dtx1
0.560691764
9.35639362
160.7218922
7.86911E−37
 7.8732E−35


Ndufa4
−0.312282402
9.983525258
159.2954748
 1.6128E−36
1.60323E−34


Lsm5
−0.407548255
9.652256708
159.0796182
1.79781E−36
1.77568E−34


Il17re
0.590542136
9.074926885
158.4513557
2.46614E−36
2.42028E−34


Tpm3-rs7
−0.294787222
9.951730222
158.186127
 2.8182E−36
2.74828E−34


Tapbp
−0.360215199
9.633906361
158.1391765
2.88556E−36
2.79627E−34


Rpl27
0.199841065
11.18362874
157.30377
4.39311E−36
4.23057E−34


Tmem258
−0.318818743
9.706925426
157.1801446
4.67505E−36
4.47411E−34


Btg1
0.36057321
10.56026433
157.00365
5.10919E−36
4.85941E−34


mt-Co2
0.178449904
11.53302585
156.9703025
5.19564E−36
4.91132E−34


Tmed2
−0.296688017
9.866059965
156.6971734
5.96104E−36
5.60047E−34


Satb1
0.535626973
9.41396337
154.740485
1.59553E−35
1.48994E−33


Lcp1
−0.251556666
10.3183034
154.3223776
1.96914E−35
1.82774E−33


Dnajc15
0.31387085
9.931084321
153.721031
2.66499E−35
2.45881E−33


Cd7
0.668431811
9.510504639
153.5856393
2.85288E−35
 2.6165E−33


Sepw1
−0.27518717
10.11754145
150.0979543
1.65025E−34
1.50456E−32


Ewsr1
−0.345594062
9.627042746
150.0365057
1.70208E−34
1.54269E−32


Cdkn2c
−0.636702077
9.207647914
149.3358462
2.42175E−34
2.18213E−32


Actr2
−0.34076163
9.642504656
148.8367424
3.11334E−34
2.78897E−32


Tubb5
−0.417183951
10.30641471
145.4558067
1.70731E−33
1.52059E−31


Ngp
−0.763681094
9.100007972
145.0011994
2.14634E−33
1.90062E−31


Isg15
−0.719651949
9.17520338
143.8950283
3.74577E−33
3.29799E−31


Tceb2
−0.237515156
10.20307649
142.9938076
5.89637E−33
5.16201E−31


Rps15
0.168454585
11.47619806
142.2891217
8.40744E−33
7.31875E−31


Cytip
0.360334035
9.597191973
142.1887143
8.84338E−33
7.65498E−31


Clic1
−0.218361527
10.68495514
140.1304999
2.49274E−32
 2.1457E−30


Ube2s
−0.454337114
9.814291968
137.7313987
 8.3432E−32
7.14178E−30


Klf13
0.398593604
9.628466206
137.2456797
1.06552E−31
9.07045E−30


Prr13
−0.278815789
10.28885144
136.8919515
1.27328E−31
1.07795E−29


Cdkn2a
−0.609121377
9.14054978
135.9701759
 2.0255E−31
 1.7054E−29


Cox17
−0.329594045
9.66363411
135.6492986
2.38076E−31
1.99363E−29


Stmn1
−0.82419623
9.807967069
133.4210017
7.31357E−31
6.09121E−29


Uqcrb
−0.273218922
9.8678254
132.0266827
1.47622E−30
1.22288E−28


Pkm
−0.240731434
10.20918593
131.7398269
1.70571E−30
1.40543E−28


2810417H13Rik
−0.967373055
9.637529027
131.3105515
2.11748E−30
1.73543E−28


Rbm39
0.23545176
10.26100638
130.597203
 3.0331E−30
 2.4727E−28


Ube2n
−0.31188351
9.608778462
129.8514637
4.41618E−30
3.58129E−28


Ywhah
−0.296531841
9.906272871
129.0537086
6.60079E−30
5.32486E−28


Calm1
−0.188744202
11.10279906
128.1469284
1.04234E−29
8.36476E−28


Lmnb1
−0.553332185
9.492228417
127.3329829
1.57079E−29
1.25403E−27


Pdia4
−0.417941212
9.32860591
126.601842
2.27046E−29
1.80326E−27


Psma2
−0.250801241
9.885834901
126.3445928
 2.5847E−29
2.04231E−27


Ppp4c
−0.306484664
9.664046883
125.3439349
4.27957E−29
3.36427E−27


mt-Co3
0.148713029
12.38729466
124.5410801
6.41375E−29
 5.0164E−27


Cox6b1
−0.201143661
10.26082572
122.5363554
1.76158E−28
1.37083E−26


Pomp
−0.26160036
9.873253648
122.454949
1.83536E−28
1.42106E−26


Dbi
−0.365045445
9.623042963
121.9090122
2.41671E−28
1.86183E−26


Cox7a2l
0.25365352
10.09942318
121.8347741
2.50885E−28
1.91816E−26


1810037I17Rik
−0.312590156
9.676973201
121.8301355
2.51473E−28
1.91816E−26


Zeb2
−0.774138414
9.127424397
121.6173644
2.79941E−28
2.12479E−26


Atp5j
−0.228873779
10.1072932
121.0463043
3.73316E−28
2.81963E−26


Npm1
0.235150388
10.40971878
119.8911973
6.68273E−28
 5.0228E−26


Atp1b3
0.318801787
9.708024434
119.2417087
9.27148E−28
6.93471E−26


Tmem176a
0.763367915
9.182539974
119.1449011
9.73518E−28
7.24636E−26


Pdcd4
0.420098355
9.642492644
118.9155041
1.09287E−27
8.09565E−26


Cd247
−0.333565058
9.579185183
118.7057752
1.21475E−27
8.95546E−26


Rpl22l1
0.208609039
10.83580793
118.6842487
1.22801E−27
9.01007E−26


Hnrnpa1
−0.369311881
9.492414828
118.3490179
1.45412E−27
1.06185E−25


Shfm1
−0.229553147
10.0031327
117.0924606
2.73992E−27
1.99135E−25


Rps21
0.238376482
10.63600103
116.6726207
3.38588E−27
2.44928E−25


Tceb1
−0.31869581
9.529590194
116.660403
3.40681E−27
 2.4529E−25


Srrm2
0.30189204
9.744719687
116.4576604
 3.7735E−27
2.70428E−25


Canx
−0.374606446
9.405124767
116.1573065
4.39053E−27
3.13191E−25


Cenpa
−0.706828827
9.37944655
115.835444
5.16417E−27
 3.6668E−25


Lztfl1
0.577921378
9.128139284
115.7740802
5.32646E−27
3.76468E−25


Pglyrp1
−0.371039398
9.700031151
114.7295603
9.01963E−27
6.34587E−25


Ifi27
−0.367396341
9.485380503
114.4243909
1.05202E−26
7.36797E−25


Cox6c
−0.199529709
10.2464669
114.0849521
1.24844E−26
8.70403E−25


Myl12b
−0.219178436
10.11053816
113.7928401
1.44659E−26
1.00401E−24


Igfbp4
0.750607125
9.125936959
113.3553129
1.80375E−26
1.24628E−24


S100a9
−0.788616203
9.108492579
112.2912902
3.08488E−26
2.12196E−24


Nkg7
−0.352273992
11.35660318
112.1715336
3.27696E−26
2.24406E−24


Wsb1
−0.434373342
9.210910529
110.9196712
6.16175E−26
 4.2009E−24


Cox7a2
−0.244165019
9.904372175
110.9093932
6.19378E−26
4.20413E−24


Erh
−0.267511865
9.871191334
110.0778456
9.42172E−26
 6.3671E−24


Cks1b
−0.63195329
9.374265449
109.9305553
1.01484E−25
6.82826E−24


Ube2l6
−0.474836411
9.105066783
108.9541719
1.66082E−25
 1.1126E−23


Capza1
−0.321589878
9.49698091
108.9198525
1.68982E−25
1.12713E−23


Pik3ip1
0.517288658
9.141032834
108.454519
2.13698E−25
1.41925E−23


S100a10
−0.239806506
11.56390824
107.633748
3.23332E−25
2.13816E−23


Cd160
0.699025169
9.159417004
107.4577704
3.53355E−25
2.32671E−23


Rbx1
−0.227759516
9.906193708
107.2191678
3.98563E−25
2.61322E−23


Gzma
1.120093335
10.5303845
106.7164441
5.13647E−25
 3.3535E−23


Camp
−0.466568955
9.07752253
106.5101125
5.70009E−25
3.70578E−23


Ctsb
−0.318746012
9.577536052
106.4526506
5.86779E−25
3.79878E−23


Vcp
−0.290019259
9.600777235
105.6169585
8.94588E−25
5.76729E−23


Ppp1ca
−0.179862972
10.60111574
105.4922694
9.52689E−25
6.11626E−23


Ran
−0.290507861
10.03079907
105.213453
1.09663E−24
6.98217E−23


Zbp1
−0.425278438
9.318275709
105.2157644
1.09535E−24
6.98217E−23


H2-D1
−0.124251699
12.15670663
104.0015903
2.02154E−24
 1.2818E−22


Myc
0.512412291
9.116237101
103.4698379
2.64389E−24
1.66955E−22


Atp8a2
0.33886315
9.069620419
101.2967204
7.91868E−24
4.98004E−22


Use1
0.333960173
9.51419359
100.7604386
1.03809E−23
 6.502E−22


Iigp1
−0.614742376
9.132296579
100.6538941
1.09546E−23
6.83355E−22


Eif4g2
−0.258455174
9.738725432
100.5005074
1.18367E−23
 7.354E−22


Cdk1
−0.677159182
9.209723077
100.3484505
1.27812E−23
7.90893E−22


Pttg1
−0.428228606
9.427760824
100.0562925
1.48127E−23
9.12934E−22


Tomm7
−0.264886375
9.683676151
99.52716681
1.93491E−23
1.18777E−21


Ubl5
−0.217789014
9.954866528
98.70357382
2.93272E−23
1.79315E−21


Gnb1
−0.310852241
9.598111237
98.56239704
3.14943E−23
1.91804E−21


Hnrnpl
−0.318458149
9.458965323
98.41828059
3.38718E−23
2.05471E−21


Tecpr1
0.380153257
9.37320746
98.26258599
3.66424E−23
2.21406E−21


Hprt
−0.296022775
9.583675978
97.63539867
5.02967E−23
3.02723E−21


Tmem176b
0.699466756
9.197393426
97.44004885
5.55118E−23
3.32812E−21


Ywhaq
−0.251767896
9.876197724
97.04439604
6.77901E−23
4.04849E−21


Tmem234
0.291933521
9.600002857
96.25813041
 1.0084E−22
5.99902E−21


Cd3g
−0.157389506
10.99201317
95.96100216
1.17169E−22
6.94361E−21


Arpc5
−0.208198677
10.28464975
95.71542866
1.32643E−22
7.83049E−21


Lockd
−0.440867625
9.277369705
95.06964861
1.83803E−22
1.08093E−20


Ctsd
−0.266169224
10.13340333
94.71984408
2.19329E−22
1.28495E−20


Atp5j2
−0.19242437
10.13808543
94.60218126
2.32762E−22
1.35848E−20


Pyhin1
−0.418379849
9.287028936
92.6509167
6.23817E−22
3.62708E−20


Tox
−0.508928639
9.127330992
92.52335084
6.65351E−22
3.85403E−20


Gnai2
−0.206265604
10.42766401
92.48466885
6.78484E−22
3.91538E−20


ler2
0.319611087
9.601826126
92.17549933
7.93207E−22
4.56035E−20


Erdr1
0.464102541
9.15671915
91.25689209
 1.2618E−21
7.22743E−20


Polr2k
−0.3265931
9.353097422
91.23516042
1.27573E−21
7.28017E−20


Hspa5
−0.281941206
9.834386077
90.86640181
1.53708E−21
8.73921E−20


Calr
−0.270251962
9.906445352
90.85450983
1.54634E−21
8.75957E−20


Hnrnpc
−0.276698646
9.578766056
90.02748793
2.34874E−21
1.32562E−19


Ccnb1
−0.644827058
9.19263149
88.81860324
4.32727E−21
2.43338E−19


Ubc
−0.215315232
10.26377247
88.71348916
4.56343E−21
2.55685E−19


Gltp
−0.291647317
9.558026501
88.50731529
5.06472E−21
2.82744E−19


Lyz2
−0.428623551
9.078273475
88.19924611
5.91825E−21
 3.292E−19


Usmg5
−0.24683068
9.690988814
87.30309401
9.31021E−21
5.16014E−19


Top2a
−0.71236757
9.359267312
86.94889885
1.11362E−20
6.15004E−19


Prc1
−0.564899799
9.171688394
86.75767354
1.22667E−20
6.75019E−19


Mcm4
−0.46256567
9.182537346
86.62660008
1.31072E−20
7.18705E−19


Fkbp5
0.406142801
9.186149988
86.58136614
1.34105E−20
7.32726E−19


Nebl
0.450513843
9.267107621
86.56702713
1.35081E−20
 7.3545E−19


Ube2c
−0.742287675
9.351481647
86.45041123
1.43285E−20
7.77374E−19


Serinc3
−0.415468602
9.341672534
86.3641674
1.49672E−20
8.06347E−19


Zfos1
0.384189119
9.321085288
86.37049565
1.49194E−20
8.06347E−19


Atp5b
−0.177130163
10.37817024
86.3041995
1.54281E−20
8.28277E−19


Hn1
−0.246470949
9.902695291
85.15461992
2.75922E−20
1.47618E−18


Sumo2
−0.192747248
10.32612922
85.14414532
2.77388E−20
1.47889E−18


Kpna2
−0.504832734
9.174376154
84.76049621
3.36786E−20
1.78938E−18


Nrp1
−0.485433003
9.201842589
84.64158269
3.57663E−20
1.89377E−18


Cd48
−0.2378112
10.47381146
84.55076715
3.74475E−20
 1.976E−18


Sec11c
−0.261864887
9.668953903
84.28019512
4.29395E−20
2.25806E−18


Psma1
−0.24204948
9.631502029
84.05535049
4.81115E−20
2.52143E−18


Pdia6
−0.351868353
9.419021935
83.95203204
5.06926E−20
 2.6477E−18


Il2rg
−0.24963658
9.757825523
83.84407232
5.35379E−20
2.78686E−18


Gstp1
−0.388378062
9.150648089
83.63583556
5.94849E−20
3.08601E−18


Phf11b
−0.316529852
9.423111324
83.42271577
6.62563E−20
3.42576E−18


Lsp1
−0.184489544
10.86029924
83.39875856
6.70641E−20
3.45593E−18


Eif1
−0.129281955
11.09222913
83.30726216
7.02411E−20
3.60758E−18


Cd82
−0.251979593
9.997069085
83.03896084
 8.0452E−20
4.11829E−18


Cox6a1
−0.18589785
10.09965413
82.98347132
8.27424E−20
 4.2215E−18


Mcm6
−0.434741928
9.318941361
82.92037214
8.54262E−20
4.34405E−18


Klrg1
−0.66112222
9.201832156
82.30022292
1.16909E−19
5.92544E−18


Tpx2
−0.545063238
9.154537098
82.14046294
1.26751E−19
6.40321E−18


Gm4955
−0.422636634
9.199318312
82.10881749
1.28797E−19
6.48529E−18


Birc5
−0.689978042
9.419044284
82.03479723
1.33712E−19
6.71085E−18


Bcl2a1d
−0.405058381
9.237077308
81.62305429
1.64682E−19
8.21171E−18


Arpc3
−0.180051392
10.13466789
81.62580935
1.64452E−19
8.21171E−18


Pim1
0.390466534
9.465218659
80.9601044
2.30321E−19
1.14477E−17


Ly6c1
0.593973796
9.127161031
80.76900017
2.53707E−19
1.25695E−17


Irf9
−0.394471258
9.19085953
80.46333485
2.96149E−19
1.46252E−17


H2-Ke6
0.382623802
9.247819067
80.1878396
3.40456E−19
1.67596E−17


Rrm2
−0.775593179
9.444956821
80.1075085
3.54582E−19
1.73994E−17


Gm12840
0.522105321
9.292404221
80.07311968
3.60808E−19
1.76486E−17


Reep5
−0.24357654
9.869875747
80.00448864
 3.7356E−19
1.82146E−17


Ghitm
−0.274937749
9.459227183
79.78746135
 4.1693E−19
2.02652E−17


Ltf
−0.187637988
9.059775685
79.75490723
4.23857E−19
2.05371E−17


Gbp4
−0.389063896
9.207766155
79.50041075
4.82125E−19
2.32871E−17


Glrx
−0.340129563
9.454384182
79.40690341
5.05492E−19
2.43394E−17


Kif20a
−0.451598251
9.112260701
79.35667874
5.18507E−19
2.48883E−17


Psmb2
−0.226426476
9.718811454
79.29191389
5.35785E−19
2.56378E−17


mt-Atp6
0.121761131
12.70239722
78.91658426
6.47886E−19
 3.0906E−17


Smc4
−0.3872419
9.525409897
78.88407307
6.58636E−19
3.13218E−17


Gpr183
0.431381035
9.245014018
78.76805609
6.98474E−19
3.31141E−17


Ifit1
−0.619753615
9.092845233
78.68290656
7.29238E−19
3.44666E−17


Mad2l1
−0.454685107
9.179564856
78.45025661
8.20383E−19
3.86558E−17


Ccna2
−0.640701651
9.236667297
78.27864952
8.94838E−19
4.20356E−17


Tacc3
−0.502848596
9.173056684
77.6145441
1.25244E−18
5.86555E−17


Hnrnpk
−0.164547584
10.2842712
77.29445282
1.47279E−18
 6.8766E−17


Klrc1
−0.449082904
9.467992396
77.21304596
1.53476E−18
 7.1443E−17


H2afx
−0.539317748
9.440262415
76.90569528
1.79319E−18
8.32214E−17


Lcn2
−0.206390753
9.061453383
76.82683074
1.86625E−18
8.63518E−17


Rpa3
−0.380997971
9.230128239
76.68099999
2.00927E−18
9.26912E−17


Rpl35
−0.158961239
11.13831905
76.53702308
2.16123E−18
9.94037E−17


Fkbp2
−0.362439923
9.306762226
76.51376299
2.18684E−18
1.00282E−16


Slc25a5
0.166065043
10.50386566
76.50621506
2.19521E−18
1.00367E−16


Cks2
−0.49697529
9.402047794
76.41366059
2.30054E−18
1.04872E−16


Atp5e
−0.167024801
10.21622649
76.28704667
2.45288E−18
1.11486E−16


Banf1
−0.308953202
9.400476146
75.55734849
3.54946E−18
1.60853E−16


Emb
0.269409659
9.697311771
75.23259584
4.18402E−18
1.89054E−16


Gbp2
−0.415666499
9.261598091
74.89491319
4.96447E−18
2.23663E−16


Cenpe
−0.487374968
9.137306059
74.4729421
6.14751E−18
2.76154E−16


Nusap1
−0.72741448
9.229804121
74.10995709
7.38847E−18
3.30935E−16


0610010K14Rik
−0.344310005
9.213495182
73.8659897
8.36044E−18
3.73385E−16


Cdc20
−0.647281342
9.224041274
73.85642712
8.40104E−18
3.74113E−16


Capza2
−0.218860051
9.723851677
73.74804301
8.87522E−18
3.94091E−16


Gramd3
0.340204113
9.380450868
73.42778822
1.04386E−17
4.62178E−16


Sept7
−0.235753818
9.711512245
73.25364665
1.14014E−17
5.03362E−16


Actn2
0.525915728
9.209592958
73.0212856
1.28259E−17
5.64633E−16


Fbxo5
−0.558938262
9.177037636
72.85443826
1.39573E−17
6.12691E−16


Kif22
−0.493813608
9.15961124
72.47963983
1.68764E−17
7.38727E−16


Xaf1
−0.393829891
9.158800712
72.38895324
 1.767E−17
7.71274E−16


2700094K13Rik
−0.315350601
9.485438786
71.71621114
2.48483E−17
1.08153E−15


Ranbp1
−0.272803989
9.7032701
71.66786291
2.54646E−17
1.10524E−15


Ssbp2
0.400331997
9.148764243
71.61265527
2.61872E−17
 1.1334E−15


S100a8
−0.942163941
9.144819806
71.51122989
2.75685E−17
1.18985E−15


Rbbp7
−0.324552015
9.3940054
71.46912886
 2.8163E−17
1.21211E−15


Rpl22
0.157903002
10.51485597
71.45778022
2.83255E−17
1.21571E−15


Rbbp4
−0.279482571
9.494526185
71.18615873
3.25061E−17
1.39126E−15


Emp3
−0.193585605
10.48526769
71.03770835
3.50462E−17
1.49582E−15


Rpl31
0.137375726
10.8998412
70.82973716
3.89423E−17
1.65752E−15


Dek
−0.326257475
9.575932497
70.56532173
4.45276E−17
1.89003E−15


Pdcd1
−0.412579078
9.161776078
70.07124061
5.72009E−17
2.42129E−15


Pde2a
0.378065671
9.096741072
69.85305389
6.38911E−17
2.69708E−15


Timp2
0.426434752
9.155914851
69.76664138
6.67523E−17
2.81016E−15


Car5b
−0.401522657
9.137375624
69.60125161
7.25908E−17
3.04763E−15


Spc25
−0.494263147
9.140489027
69.5855285
7.31718E−17
3.06367E−15


Nap1l1
−0.297646823
9.452697682
69.31010443
8.41374E−17
3.51325E−15


Ifng
−0.470155564
9.195873407
69.27531811
8.56346E−17
 3.5661E−15


Plscr1
−0.366671337
9.165831717
69.15277185
9.11242E−17
3.78448E−15


Ncapg
−0.441222811
9.11714452
69.07600109
9.47412E−17
3.92412E−15


Capzb
−0.165768529
10.32096611
68.88018602
1.04631E−16
4.32212E−15


Mrps21
−0.244713874
9.534978075
68.45138093
1.30045E−16
5.35756E−15


Ccnb2
−0.590482352
9.326857307
68.23617077
1.45041E−16
5.95943E−15


Rpl39
0.126575039
11.54192101
68.06484771
1.58206E−16
6.48308E−15
















TABLE 2B







Colon LPL Ctrl vs KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hsp90aa1
−1.296438691
10.855082
1796.189057
0
0


Rpl35
0.579539672
11.07230469
1743.711997
0
0


Dnaja1
−1.10964182
10.81123241
1596.155309
0
0


Dnajb1
−2.33531776
10.34134508
2179.594615
0
0


Hsp90ab1
−0.982797393
11.27051881
2052.383487
0
0


Ubb
−0.694803098
12.95887764
2028.318147
0
0


Hspa8
−0.737680613
12.41996892
1606.669603
0
0


Hspa1a
−3.015660998
11.06978681
1470.85346
0
0


Gm8730
0.693343323
10.36024832
1323.369049
  9.437E−290
 1.6608E−286


Malat1
−0.593417954
14.67213889
1137.684854
 2.1302E−249
  3.374E−246


Hspe1
−1.038624464
10.30562386
1074.381316
 1.2219E−235
 1.7594E−232


Rbm3
0.546053782
10.66488443
928.3699119
  6.678E−204
 8.8144E−201


Gm10076
0.869179815
9.517410456
890.0933345
 1.3977E−195
  1.703E−192


Chchd2
−0.492618776
10.4561239
823.1952025
 4.8876E−181
 5.5296E−178


Hsph1
−1.267762622
9.425286154
757.4238333
 9.7545E−167
  1.03E−163


Jund
−0.668130275
11.8228244
748.5293847
 8.3785E−165
 8.2942E−162


Rplp0
0.268693712
12.37075798
671.3237314
 5.1491E−148
 4.7975E−145


Hspa1b
−1.599727007
9.248134998
620.7646715
 5.0985E−137
 4.4864E−134


Ddx5
−0.386151289
11.1817586
603.7799595
 2.5213E−133
 2.1019E−130


H2-D1
−0.247894687
12.34520231
546.2254928
 8.3388E−121
 6.6039E−118


H2-K1
−0.323864629
11.66121845
544.5044601
 1.9747E−120
 1.4894E−117


Hspd1
−0.837182162
9.767644293
537.1408453
 7.8966E−119
 5.6852E−116


Fosb
−1.164635491
9.364618516
517.7187705
  1.327E−114
 9.1381E−112


H2-Q7
−0.422171081
10.64378871
516.4435666
 2.5136E−114
 1.6589E−111


Eef2
0.274087183
11.28374076
505.1485441
 7.2071E−112
 4.5661E−109


mt-Co1
0.272956043
12.17896251
503.0154954
 2.0983E−111
 1.2783E−108


Eno1
0.551566329
9.902385531
499.021854
 1.5517E−110
 9.1025E−108


Rpl32
0.22194434
12.42741546
492.9658819
 3.2246E−109
 1.8241E−106


Rgcc
−1.118136609
9.550274028
486.3554888
 8.8475E−108
 4.8323E−105


Rpl6l
0.478179424
10.15590832
484.5969007
 2.1354E−107
 1.1274E−104


Fth1
−0.335462508
11.63346883
472.0661866
  1.138E−104
 5.8146E−102


B2m
−0.19628426
12.80490735
466.5540764
 1.8015E−103
 8.9168E−101


Rpl29
0.283720025
11.21054861
459.7879827
  5.346E−102
 2.5659E−99


Arhgdib
0.386013595
10.67695562
447.048832
 3.165E−99
1.47443E−96


Lmna
−0.94001507
9.757618312
441.2087912
5.90701E−98
2.67317E−95


Crem
−0.759239846
10.12298761
430.3980194
1.33125E−95
5.85713E−93


Ubald2
−0.477416083
10.61574622
420.040934
2.39076E−93
1.02344E−90


Eif1
−0.24664365
11.86551627
418.9616487
4.10635E−93
1.71159E−90


Odc1
−0.632215319
10.52031093
405.1128919
4.24561E−90
1.72426E−87


Rpl3
0.197968255
12.08615037
391.114481
4.73428E−87
1.87466E−84


Gm2000
0.620129441
9.580454828
389.15096
1.26682E−86
4.89394E−84


Gm11808
0.472407768
10.12797784
386.6017314
4.54666E−86
1.71463E−83


Hspa5
−0.400182424
11.01753787
383.96611
1.70407E−85
6.27694E−83


Coro1a
0.372189609
10.69909524
376.690267
6.53959E−84
 2.3541E−81


Prr7
−0.593803345
9.822329769
370.3859824
1.54225E−82
5.42837E−80


Rps11
0.197413243
12.24071835
370.1436999
1.74143E−82
 5.9962E−80


Limd2
0.478902583
9.998680235
369.6083445
2.27756E−82
7.67538E−80


Bin2
0.616456928
9.522717136
361.9853895
1.04058E−80
3.43369E−78


Rpl22l1
0.33367178
10.80916121
354.53505
 4.361E−79
1.40967E−76


Eif2s3y
0.846852212
9.189708727
353.9086731
5.97013E−79
1.89122E−76


Cd52
0.329531615
11.76968202
350.1895093
3.85364E−78
1.19682E−75


Gm9493
0.397130464
10.27648549
349.5148795
5.40483E−78
1.64629E−75


Cdkn1a
−0.794410975
9.655752351
348.30647
9.90677E−78
2.96063E−75


Junb
−0.439739713
11.78308969
344.4692692
6.78518E−77
 1.9902E−74


Rpl27-ps3
0.564371664
9.812969165
341.4961833
3.01322E−76
8.67752E−74


Slc25a5
0.356515832
10.33629693
334.2365652
1.14835E−74
3.24799E−72


Klf2
0.966338109
9.87646467
331.2250796
5.19954E−74
1.44483E−71


Rac2
0.275882336
11.06163595
325.2530092
1.03923E−72
2.83799E−70


Rpl15
0.276369843
10.68387878
321.477891
6.90219E−72
1.85295E−69


Gm9844
0.5647633
9.461659088
318.7422393
2.72189E−71
7.18533E−69


Ptprcap
0.476661033
9.942632577
318.6711031
2.82076E−71
7.32426E−69


Rpl24
0.194887307
11.7645521
317.3192251
5.55699E−71
1.41963E−68


Fus
−0.428773907
9.866010533
316.630995
7.84794E−71
1.97307E−68


Rpl13-ps3
0.525225173
9.582684681
312.3660701
6.66497E−70
1.64948E−67


S100a6
0.525962148
11.03347261
310.3419701
1.83962E−69
4.48274E−67


Eif3f
0.27112225
10.61842693
309.6198908
2.64259E−69
6.34181E−67


H2-Q6
−0.488240508
9.705178604
307.3949645
8.06718E−69
1.90711E−66


Eif5
−0.462609431
9.797249973
305.4905297
2.09703E−68
4.88455E−66


Apobec3
0.625969666
9.401539187
304.9819365
2.70648E−68
6.21274E−66


Gm9843
0.405097402
10.47924093
303.2731905
6.37773E−68
 1.4431E−65


H1f0
0.85409956
9.356160563
303.2280563
6.52377E−68
1.45535E−65


Cnn2
0.459644323
9.811452628
296.4205581
1.98439E−66
4.36538E−64


Sertad1
−0.717279998
9.235302519
293.8116324
7.34606E−66
1.59389E−63


Lsp1
0.381730916
10.25962615
291.7842784
2.03134E−65
4.34789E−63


Rpl9-ps6
0.500123891
9.813279691
290.7553132
3.40393E−65
7.18865E−63


Rpl10-ps3
0.553256709
9.514158932
289.0389389
8.05312E−65
1.67833E−62


Ubc
−0.375514664
10.9972925
286.6902384
 2.6166E−64
5.38238E−62


Zfp3612
0.599554856
9.691467426
281.0413259
4.45323E−63
 9.0429E−61


Pycard
0.595529185
9.493681974
279.3579798
1.03634E−62
 2.0778E−60


Gm10073
0.522116351
9.637520171
278.0697639
1.97803E−62
3.91625E−60


Rgs2
−0.635850555
10.09899367
276.0893809
5.34329E−62
1.04484E−59


Rpl23a-ps3
0.343715493
10.69786568
274.1111792
1.44185E−61
2.78506E−59


S100a4
0.738831043
9.845301206
271.3430121
5.78373E−61
1.10372E−58


Epsti1
0.443939453
9.867770305
266.4193722
6.84401E−60
 1.2905E−57


Ifrd1
−0.474596587
10.00161652
262.3022178
5.40376E−59
1.00694E−56


Cacybp
−0.560229675
9.442844244
260.8502655
 1.1199E−58
2.06257E−56


Uba52
0.356717075
10.18138302
260.7323335
1.18819E−58
2.16319E−56


Arf4
−0.398360184
9.945640276
259.6927564
2.00211E−58
3.60357E−56


Mat2a
−0.579951827
9.446706214
253.6395059
4.17847E−57
7.43626E−55


Cd7
0.9863336
9.31700291
253.534729
4.40411E−57
7.75074E−55


Lcp1
0.350365569
10.21732737
253.1792183
5.26452E−57
9.16315E−55


Gm10020
0.626059668
9.179717204
250.3467675
2.18193E−56
3.75648E−54


Saraf
−0.367375045
10.20218079
248.9026846
4.50471E−56
7.67205E−54


Pglyrp1
0.745685753
9.248613864
248.7407525
4.88618E−56
8.23322E−54


Hmha1
0.4442368
9.65919282
245.5542415
 2.4193E−55
4.03361E−53


Tbc1d10c
0.555749736
9.412018375
245.2494518
 2.8193E−55
4.65155E−53


Il21r
−0.437344694
10.2017939
235.2828562
4.20044E−53
6.85885E−51


Got1
−0.578693665
9.873061625
227.775993
1.82126E−51
2.94356E−49


Id2
−0.428153652
10.67713064
227.1293055
2.52005E−51
4.03183E−49


Gzma
1.097864847
10.4314706
224.6382402
8.80465E−51
1.39457E−48


Ass1
0.551203488
9.461406247
224.0954108
 1.1564E−50
1.81348E−48


Atf3
−0.847490224
9.233159259
220.5128652
6.99061E−50
1.08553E−47


Gnai2
0.343784913
10.10321215
218.455168
1.96497E−49
3.02167E−47


Vgll4
−0.495246625
9.708628848
217.328475
3.46041E−49
5.21994E−47


Gm10036
0.488692316
9.447957927
217.3445053
3.43266E−49
5.21994E−47


Vps37b
−0.356521425
10.62817923
213.0553128
2.96009E−48
4.42311E−46


Ctla4
−0.425992423
10.1474776
212.5306436
3.85271E−48
5.70309E−46


Pfn1
0.240155328
12.08589684
211.5092731
6.43562E−48
9.43832E−46


Gm6133
0.385457869
9.838579615
210.5516257
1.04116E−47
1.51293E−45


Rgs10
0.482419062
9.543994531
209.2301427
2.02222E−47
2.91181E−45


Dgat1
−0.509721261
9.781782774
202.6225445
5.59181E−46
7.97916E−44


Calm2
−0.288834956
10.41747073
201.1940212
1.14623E−45
 1.621E−43


Klf4
−0.805778426
9.163911069
198.5381953
4.35348E−45
6.10219E−43


Gstp1
0.560007281
9.167288045
197.5281815
7.23193E−45
1.00479E−42


Clic1
0.288038175
10.28204409
197.2507071
8.31399E−45
1.14509E−42


Hmgb2
0.354889486
10.66675652
196.7520978
1.06813E−44
1.45846E−42


Il7r
0.473145073
9.661302261
195.7526991
1.76497E−44
2.38934E−42


Gm10250
0.518735292
9.261259604
193.764279
4.79415E−44
6.43513E−42


Cd48
0.460544257
9.63721787
192.5550895
8.80297E−44
1.17168E−41


Nmrk1
−0.588456161
9.417758277
192.2468691
1.02779E−43
1.35659E−41


Rps18-ps3
0.492924084
9.426467835
191.4030749
1.57064E−43
2.05598E−41


Gmfg
0.288142784
10.16792471
190.062755
3.08058E−43
3.99946E−41


Cd160
0.772172194
9.171269402
187.9194935
9.04635E−43
1.16492E−40


Fos
−0.848606018
9.403276926
187.6453713
1.03827E−42
1.32623E−40


Calr
−0.332836814
10.00618833
187.4552473
1.14239E−42
1.44755E−40


Ltb
0.435310874
10.06047948
187.4344179
1.15441E−42
1.45117E−40


Sptssa
0.443750066
9.506220885
187.1311408
1.34451E−42
1.67683E−40


Rps19
0.163786035
12.56834608
186.4521678
 1.8914E−42
2.34046E−40


Nop56
−0.471203711
9.397440468
185.7941949
2.63281E−42
3.23265E−40


Cox4i1
0.202013585
10.64833002
185.2586938
3.44606E−42
4.19863E−40


Cnbp
−0.263558911
10.22998911
181.685277
2.07714E−41
2.51143E−39


Lck
0.257552685
10.24063704
179.7802094
5.41265E−41
6.49477E−39


AY036118
0.563399136
9.204622057
178.8367065
8.69799E−41
1.03585E−38


Itgae
0.682063184
9.148814961
178.4772671
1.04208E−40
1.23176E−38


Phlda1
−0.673473912
9.377283171
178.2435364
1.17203E−40
1.37509E−38


Stat3
−0.443604694
9.594221317
177.9403458
1.36502E−40
1.58975E−38


Cd47
0.266539976
10.2319394
176.5081391
2.80463E−40
3.24252E−38


Rpl18
0.144665747
11.79456362
175.0801355
5.75052E−40
6.60018E−38


Nr3c1
−0.516138019
9.401251838
174.75596
 6.7686E−40
 7.7128E−38


Lrrc58
0.46964707
9.349073684
171.1319595
4.18736E−39
 4.7374E−37


Isg15
−0.670410352
9.423880415
169.027457
1.20665E−38
1.35548E−36


Dnaja4
−0.644926354
9.231175487
168.0185211
2.00427E−38
2.23561E−36


Gramd1a
0.466406544
9.358991876
166.9212357
3.48044E−38
3.85502E−36


Satb1
0.439489127
9.719193943
166.7565659
3.78098E−38
4.15881E−36


Pitpna
0.435855152
9.418669714
166.5808975
4.13025E−38
4.51165E−36


Lmnb1
−0.393042571
9.763928547
164.0771622
1.45514E−37
1.57863E−35


Rab8a
0.415127367
9.432790068
164.0612625
1.46683E−37
1.58048E−35


Rpl36-ps3
0.441944981
9.423156321
163.8405856
1.63903E−37
1.75409E−35


Dnajb6
−0.293570643
10.00275021
162.2193209
3.70488E−37
3.93836E−35


Zyx
0.538469116
9.22950728
162.1601301
3.81685E−37
4.03034E−35


Gm42418
0.493993592
9.306589985
161.57956
5.11145E−37
 5.3616E−35


Rpl13a
0.119258065
13.13921041
161.206428
6.16686E−37
6.42612E−35


Tpt1
−0.145383512
11.80754119
160.7269708
7.84903E−37
8.12554E−35


Bag3
−0.659792855
9.118691017
159.9745004
1.14609E−36
1.17876E−34


Ccnd2
−0.396544062
9.784153549
159.2696002
1.63393E−36
1.66967E−34


Arhgap9
0.438276791
9.35894319
157.7278258
3.54905E−36
3.60343E−34


Glipr2
0.446096284
9.423554685
157.1318986
4.78992E−36
4.83233E−34


Fam110a
−0.472890454
9.453583185
157.1015845
4.86354E−36
4.87554E−34


Selplg
0.274720161
10.17793864
156.6736327
6.03206E−36
6.00892E−34


Cycs
−0.32552726
9.75607587
156.6281029
6.17184E−36
6.10974E−34


Il4ra
−0.452891333
9.452897121
156.4370671
6.79453E−36
6.68439E−34


Emp3
0.353071287
9.834646436
156.2537044
7.45123E−36
7.28518E−34


Rpl4
0.134730304
11.68362122
155.6700537
9.99467E−36
 9.712E−34


Hnrnpa3
0.266912928
10.08163683
155.1519983
1.29711E−35
1.25274E−33


Rpsa
0.151911683
11.60418555
154.4391519
1.85677E−35
1.78238E−33


Sec62
−0.329708774
9.701018261
152.843486
4.14456E−35
3.95456E−33


BC021614
0.531468977
9.186997015
152.6941588
4.46801E−35
4.23766E−33


Hnrnpf
0.226485212
10.3476999
152.4248087
 5.1166E−35
4.82392E−33


Btf3
0.174817152
10.69728489
150.1944197
1.57204E−34
1.47335E−32


Tuba4a
−0.500013194
9.3182479
149.6257279
2.09299E−34
1.95005E−32


Rplp2
−0.144805547
11.92184821
149.256893
2.51993E−34
 2.3341E−32


Gch1
−0.466693357
9.423417801
148.6833891
3.36316E−34
3.09704E−32


Arpc1b
0.211873522
10.49392739
148.4554378
3.77203E−34
3.45348E−32


Stk17b
0.281362595
10.00322266
148.0916995
4.52987E−34
4.12349E−32


Ppp1ca
0.240424662
10.26494776
148.060095
4.60251E−34
4.16567E−32


Rpl7a-ps5
0.486459932
9.2808747
148.0086319
4.72329E−34
4.25069E−32


Cyp51
−0.517971726
9.223050414
146.0605091
1.25925E−33
1.12685E−31


Sub1
−0.214884457
11.18398687
145.3238318
1.82458E−33
1.62357E−31


Actr3
0.249028441
10.16798322
145.0491999
 2.0951E−33
1.85387E−31


Ms4a6b
0.294576449
10.12969439
144.501494
2.76025E−33
2.42886E−31


Tubb4b
−0.459637938
9.394536981
144.3920797
2.91655E−33
2.55222E−31


Eif3h
0.208541804
10.26895897
144.1508682
3.29311E−33
2.86591E−31


Coq10b
−0.411794907
9.435490542
144.0065092
3.54134E−33
 3.0651E−31


Atp5c1
0.269041545
9.839431013
142.7411254
6.69627E−33
5.76425E−31


Rps18
0.122847279
12.46503118
139.9990592
 2.6633E−32
2.28021E−30


Nr4a2
−0.513897887
9.457054691
139.5805932
3.28798E−32
2.79991E−30


Calm1
−0.187542883
10.85460141
139.4756112
3.46647E−32
2.93612E−30


Rpl13
0.114773349
12.62813742
138.4213697
5.89437E−32
 4.966E−30


Ict1
0.423189272
9.30361635
138.3204015
6.20181E−32
5.19738E−30


Hmgn2
0.550119942
9.341504132
138.1803419
6.65501E−32
5.54783E−30


Lef1
0.504911527
9.197619018
137.0327804
1.18611E−31
 9.836E−30


Grk6
0.422500161
9.358866658
136.6318883
1.45146E−31
1.19738E−29


Gm10263
0.500153042
9.186742654
136.3215546
1.69699E−31
1.39267E−29


Gem
−0.660716773
9.293071626
134.6824614
 3.8743E−31
3.16314E−29


Klhl6
0.483227269
9.233459769
133.712411
6.31515E−31
5.12952E−29


Cd27
−0.611171828
9.270411364
133.5494989
6.85521E−31
5.53978E−29


Rpl10a
0.159600898
11.11793653
133.4138158
7.34009E−31
5.90151E−29


Xbp1
−0.375600558
9.506719641
132.8318821
9.84016E−31
7.87163E−29


Actb
0.349014866
13.2991423
132.5191377
1.15191E−30
9.16838E−29


Shisa5
0.187947346
10.97087
132.4670563
1.18253E−30
9.36503E−29


Dnajc15
0.287104543
9.848245672
132.2517602
1.31799E−30
1.03859E−28


Fmnl1
0.429752574
9.260548258
129.9782686
4.14289E−30
3.24847E−28


Cdkn2d
0.464791922
9.29200856
129.2330519
6.03052E−30
4.70529E−28


Fxyd5
0.182264591
10.89173272
128.760728
7.65071E−30
5.94018E−28


Arpc5
0.249915994
10.04618205
128.6880991
7.93585E−30
6.13151E−28


Tob1
−0.446983839
9.361751749
128.221138
1.00408E−29
7.72024E−28


Sp100
0.378951326
9.450532416
127.737472
1.28117E−29
9.80309E−28


Cox7a2l
0.233483798
10.08201636
127.107975
1.75936E−29
1.33974E−27


Xist
−0.56767985
9.970373424
126.6271392
 2.2417E−29
1.69887E−27


Hist1h1c
0.557306764
9.489015558
126.3156087
2.62273E−29
1.97816E−27


Pgk1
0.418281433
9.112923746
125.3115168
4.35006E−29
3.26543E−27


Actg1
0.182969375
12.14233273
125.146896
4.72632E−29
3.53114E−27


Mtch1
0.458946966
9.20177114
124.5864031
6.26892E−29
4.66166E−27


Atp2b1
−0.38615604
9.501506429
124.1820724
7.68576E−29
5.68854E−27


Ncl
−0.245541061
10.05061385
123.9476575
8.64954E−29
 6.3721E−27


S1pr1
0.528441748
9.211582313
123.7386899
9.61016E−29
7.04701E−27


Slc25a4
0.348268536
9.539790652
123.6240204
1.01819E−28
7.43185E−27


Tmem234
0.309086225
9.603992608
123.5902044
1.03569E−28
7.52492E−27


Ahsa1
−0.373673862
9.394169648
123.4119192
1.13306E−28
8.19477E−27


Oat
−0.435562041
9.261683421
123.1811798
1.27279E−28
9.16353E−27


Eif4a1
−0.209870948
10.40687573
123.0223878
1.37884E−28
9.88212E−27


Srsf5
−0.243227861
10.03951019
121.6337503
2.77639E−28
1.98086E−26


Rasal3
0.417194458
9.277924457
121.128153
3.58228E−28
2.54438E−26


Txn1
−0.257078553
9.989683557
120.9745987
3.87056E−28
2.73687E−26


Dusp5
−0.290377017
9.972912538
120.6642471
 4.526E−28
3.18611E−26


Mrfap1
−0.307122783
9.592747399
120.576342
4.73107E−28
3.31572E−26


Srsf2
−0.297033097
9.8103015
120.5673514
4.75256E−28
3.31611E−26


Sfn
−0.630910469
9.178735424
120.3008256
5.43595E−28
3.77632E−26


Rps12-ps3
0.308504409
9.879369687
120.1649948
5.82119E−28
4.02373E−26


Ccdc85b
0.376786261
9.099879984
120.1576082
5.84291E−28
4.02373E−26


Eif3e
0.216240052
10.08436298
119.78202
7.06084E−28
4.84141E−26


Smox
−0.474515311
9.123010044
119.5466722
7.95026E−28
5.42777E−26


Prelid1
0.300888669
9.653107806
119.1448432
9.73547E−28
6.61803E−26


Socs1
−0.469790829
9.336838521
117.5893552
2.13272E−27
 1.4436E−25


Gpi1
0.268069428
9.724725928
117.3315071
2.42881E−27
1.63702E−25


Gm8186
0.400557572
9.271352225
117.0049248
2.86356E−27
1.92186E−25


Gm26917
0.355608704
9.439877032
116.7023452
3.33552E−27
2.22917E−25


Kdm6b
−0.474669899
9.658683083
116.14973
4.40733E−27
 2.9331E−25


Morf4l2
−0.385016023
9.334072103
115.2078964
7.08649E−27
4.69635E−25


mt-Atp6
0.13109516
12.41359392
114.2993627
1.12049E−26
7.39475E−25


Rps21
−0.181566483
10.91649475
114.161468
1.20118E−26
 7.8944E−25


Traf1
−0.259615851
10.09188115
113.4484171
1.72101E−26
1.12641E−24


Hmgb1
0.245489958
10.23428059
113.378642
1.78265E−26
1.16195E−24


Rps27
−0.126585153
13.17754164
113.3397676
1.81794E−26
 1.1801E−24


Gimap4
0.215414428
10.44074796
113.191718
1.95888E−26
 1.2664E−24


Gnb2
0.258833488
9.763400839
112.9354823
2.22912E−26
1.43524E−24


Itgb7
0.274275587
9.895610202
112.219657
3.19837E−26
2.05097E−24


Kcnab2
0.416180538
9.204098465
110.340368
8.25308E−26
5.27099E−24


Rps6
0.103817085
12.19422287
109.8318232
1.06667E−25
6.78514E−24


Itpkb
−0.372082819
9.445651895
108.7449466
1.84571E−25
1.16937E−23


Kxd1
0.377030142
9.31810604
108.4195949
2.17497E−25
1.37248E−23


Gm5424
0.355390948
9.09348985
108.2876044
2.32474E−25
1.46117E−23


Ctsw
0.281167862
9.869959927
106.8287454
4.85349E−25
3.03852E−23


Qrfp
0.243034806
9.076767353
106.3828523
6.07814E−25
3.79022E−23


Capzb
0.213939408
10.11156981
106.153532
6.82381E−25
4.23853E−23


Tpgs1
0.420110336
9.169815546
105.7409159
8.40342E−25
5.19929E−23


Itga4
0.412518622
9.298709558
105.4396292
9.78336E−25
6.02952E−23


Ankrd11
0.350142771
9.482587467
104.8812954
1.29676E−24
7.96102E−23


Pkp3
0.331642575
9.632608745
104.763521
1.37618E−24
8.41594E−23


Znrf1
0.393356078
9.30009727
104.5615058
1.52389E−24
9.28341E−23


Gpsm3
0.273081602
9.652489804
103.3850532
2.75949E−24
1.67462E−22


Csrp1
−0.407937762
9.37033353
103.2949394
 2.8879E−24
1.74586E−22


Ier5l
−0.547686053
9.138751627
102.9398289
3.45484E−24
2.08065E−22


Vasp
0.227570734
9.975852973
102.8106476
3.68762E−24
2.21243E−22


Rbm39
−0.167004852
10.64268875
102.3487305
4.65597E−24
2.78286E−22


Pnrc1
−0.206120221
10.52842542
101.7477551
6.30616E−24
3.75501E−22


Arpc3
−0.186319393
10.54396257
101.3233979
7.81274E−24
4.63468E−22


Lrch4
0.386196626
9.117920834
101.0593439
8.92685E−24
5.27583E−22


Tnfsf11
−0.479155286
9.528185643
100.5769031
1.13888E−23
6.70585E−22


Ms4a4b
0.224364573
10.74767447
100.0145775
1.51279E−23
 8.8745E−22


Wsb1
−0.383939877
9.299259433
99.70808238
1.76599E−23
1.03216E−21


Cox17
−0.255036164
9.759086926
99.34607039
2.12018E−23
1.23038E−21


Rps26-ps1
0.376422445
9.302607157
99.34560267
2.12068E−23
1.23038E−21


Aprt
0.302163807
9.570312455
97.89843718
4.40401E−23
2.54581E−21


Commd8
0.340663528
9.362522227
97.69437133
4.88208E−23
 2.8119E−21


Cmtm7
0.347833176
9.445414037
97.66881931
4.94549E−23
 2.8381E−21


Cdk2ap1
0.40313369
9.207010836
97.41784043
5.61379E−23
  3.21E−21


Nhp2l1
−0.25771889
9.660380552
97.18476802
6.31506E−23
3.59799E−21


Arhgap15
0.345069342
9.353711095
97.13997149
6.45956E−23
3.66713E−21


Ikzf1
0.364959967
9.314515256
97.12258211
6.51654E−23
3.68627E−21


Mrps6
−0.445518043
9.167109148
97.06634456
6.70428E−23
3.77897E−21


Pdlim2
0.398459075
9.182597688
96.96123973
7.06979E−23
3.97086E−21


Hspa2
−0.459505667
9.124122695
96.94098529
7.14248E−23
3.99752E−21


Vim
0.262752919
10.51559022
96.26760304
1.00359E−22
5.59713E−21


Traf4
−0.411142056
9.288678658
96.17375062
1.05231E−22
5.84825E−21


Coro1b
0.359271007
9.291592437
95.80235442
1.26945E−22
7.03034E−21


Litaf
−0.434433383
9.369696159
95.74269972
1.30828E−22
7.22016E−21


Ier5
−0.332369309
9.648355931
95.20641105
1.71534E−22
9.43377E−21


Cxcr6
0.285170249
10.38589926
94.75608108
2.15351E−22
1.18026E−20


Gyg
0.404072997
9.169055117
94.60060052
2.32948E−22
 1.2723E−20


Gngt2
−0.414175481
9.266095139
94.22857227
2.81113E−22
1.53009E−20


Srgn
−0.156866717
11.40960169
94.22033317
2.82286E−22
1.53121E−20


Traf3ip3
0.398126336
9.211377897
94.14101487
2.93827E−22
1.58837E−20


Slc25a3
−0.223869744
9.929245406
93.89114737
3.33362E−22
1.79596E−20


C1d
0.358002392
9.257445341
93.60629381
3.84962E−22
2.06692E−20


Taf10
0.329789291
9.42027031
93.17625006
4.78387E−22
2.55986E−20


Rrad
−0.422165808
9.481942925
92.71155163
6.04994E−22
3.22643E−20


Myo1f
0.386024191
9.211461927
90.89289789
1.51663E−21
8.06104E−20


Hsd11b1
0.410088948
9.207302928
90.62179281
1.73934E−21
9.21385E−20


Ctla2a
−0.340237861
10.39420628
90.54680962
1.80652E−21
9.53783E−20


Tubb5
0.33277636
9.951843603
90.14093695
2.21785E−21
1.16706E−19


Gramd3
0.284054197
10.20990355
90.01056232
2.36892E−21
1.24243E−19


Jun
−0.655178909
9.472386028
89.47089847
3.11182E−21
1.62667E−19


Fam169b
0.401940452
9.20492433
89.45833686
3.13165E−21
1.63165E−19


Fermt3
0.346761961
9.277314729
89.42967881
3.17734E−21
1.65003E−19


Ikzf3
−0.43554387
9.229056647
89.22703786
3.52005E−21
1.82203E−19


Caprin1
0.362718036
9.222741789
89.18692735
3.59215E−21
1.85329E−19


Bola2
−0.279074797
9.545437178
89.07835747
 3.7948E−21
1.95149E−19


1700097N02Rik
0.426479844
9.138943007
88.54524555
4.96853E−21
2.54682E−19


Akt1
0.388322632
9.186110081
88.23288633
5.81845E−21
2.97285E−19


Set
0.275235713
9.68026491
87.87236611
6.98173E−21
3.55574E−19


Lcn4
0.386003461
9.104970691
87.03518994
1.06607E−20
5.41203E−19


Ptpn6
0.374733064
9.254685928
86.45613527
1.42871E−20
7.20681E−19


Tmem71
0.392168946
9.18300717
86.45911911
1.42656E−20
7.20681E−19


Prkcq
0.385697348
9.187898023
86.1059948
1.70545E−20
8.57544E−19


Rps3a1
0.101927456
11.66239034
86.05600387
1.74911E−20
8.76715E−19


Hilpda
−0.363494493
9.621933344
85.85753408
1.93377E−20
9.66215E−19


Rpl13a-ps1
0.369121872
9.125886702
85.80554006
1.98529E−20
9.88838E−19


Cotl1
0.189250759
10.42452425
85.51065232
2.30457E−20
1.14426E−18


Kpna1
−0.370106801
9.300870038
85.23248687
2.65268E−20
1.31299E−18


Gabpb1
−0.35309655
9.443575937
85.20182613
2.69413E−20
1.32936E−18


Fosl2
−0.360285481
9.496287214
85.06065057
2.89352E−20
1.42331E−18


mt-Nd2
−0.223466869
9.877039562
84.76700348
 3.3568E−20
1.64608E−18


Ctbp1
0.291313018
9.41304975
84.69950904
3.47337E−20
1.69798E−18


Stat4
−0.316811236
9.451262982
84.38770905
4.06668E−20
1.98191E−18


Lgals1
0.205366044
11.71367544
84.2394234
4.38342E−20
2.12972E−18


Def6
0.357773345
9.254739348
84.07852182
4.75509E−20
2.30324E−18


Plscr1
−0.37206631
9.476236025
83.60981525
6.02731E−20
2.91056E−18


Gltscr2
0.174676511
10.26087104
83.346365
6.88653E−20
3.31537E−18


Pik3ip1
0.330447087
9.095932723
83.00333665
 8.1915E−20
3.93167E−18


Naca
0.132857132
10.78159304
82.76181285
 9.2561E−20
4.41914E−18


Lbr
0.318806475
9.348045598
82.76035438
9.26293E−20
4.41914E−18


Ly6e
−0.164934597
10.75197012
82.47918371
1.06789E−19
5.07937E−18


Ubxn4
−0.283952138
9.497877918
82.09781857
1.29515E−19
 6.1419E−18


Maff
−0.449911666
9.211492069
81.93490116
1.40644E−19
6.64972E−18


Slc5a3
−0.383528621
9.112932121
81.55251603
1.70666E−19
8.04516E−18


Ywhah
0.252414688
9.657038205
81.37024179
1.87155E−19
8.79628E−18


Susd3
0.35903436
9.274618606
81.24943703
1.98952E−19
9.29559E−18


Snhg12
−0.372153059
9.217070705
81.25063679
1.98832E−19
9.29559E−18


Pim3
−0.419460628
9.239693094
81.10803033
 2.1371E−19
9.95573E−18


Sema4d
0.336007509
9.272910863
81.03992068
2.21204E−19
1.02746E−17


Nrip1
−0.351147226
9.518465731
80.79922139
2.49856E−19
1.15716E−17


Errfi1
−0.415709417
9.203060475
80.77279894
 2.5322E−19
1.16931E−17


Adora2a
−0.337733868
9.371066602
80.11544679
3.53161E−19
1.62608E−17


Rps15a
−0.091705836
12.40648985
80.05818453
3.63545E−19
1.66904E−17


Tcf7
0.361212693
9.327301692
79.84620757
4.04716E−19
1.85269E−17


Klrb1f
0.310571128
9.09219065
79.5343695
4.73909E−19
2.16318E−17


Rpl23a
−0.093737153
12.18419476
79.4984072
4.82614E−19
2.19659E−17


Atp5l
0.148555301
10.43217254
79.40175043
5.06812E−19
2.30011E−17


Rps27rt
0.194128581
11.15059622
79.12000934
5.84493E−19
2.64508E−17


Hist1h2ap
0.371210153
9.098222032
79.03133498
6.11326E−19
2.75863E−17


Dad1
−0.188540821
9.987070117
78.99222215
6.23549E−19
 2.8058E−17


Pdia6
−0.305181564
9.433423543
78.96680159
6.31625E−19
2.83408E−17


Dedd2
−0.361161452
9.208472136
78.60470661
7.58684E−19
3.39458E−17


Capza1
0.275051341
9.421084656
78.45568471
8.18131E−19
3.65025E−17


Whsc1l1
0.286256556
9.465405344
77.97147828
1.04539E−18
4.65111E−17


Dusp14
−0.490461557
9.164191183
77.49990377
1.32729E−18
5.88878E−17


Pabpc1
0.128653685
10.80961358
77.10286727
1.62282E−18
7.17983E−17


Flt3l
0.342999594
9.248983424
76.47498946
 2.2302E−18
9.83958E−17


Arrb2
0.323205878
9.299307513
76.15477607
 2.6228E−18
1.15396E−16


mt-Co3
0.113435634
12.04559976
76.05277042
2.76185E−18
1.21177E−16


Sept9
0.288906266
9.423194345
76.02239789
2.80465E−18
1.22715E−16


2810001G20Rik
0.388632897
9.147759194
75.85013039
3.06032E−18
1.33533E−16


1600014C10Rik
0.376989592
9.154287123
75.75980593
3.20356E−18
1.39399E−16


Tmem30a
0.308038318
9.310066934
75.25148409
4.14419E−18
1.79835E−16


Nfkbie
−0.336107134
9.343303521
75.20801706
4.23643E−18
1.83336E−16


Gpx4
−0.205314323
10.06582643
75.20257186
4.24813E−18
1.83341E−16


Gm42726
0.320348649
9.104150123
75.1172932
4.43564E−18
1.90913E−16


Ramp3
−0.440634397
9.976673631
75.0436194
4.60429E−18
1.97635E−16


Ifitm3
0.451646848
9.710327146
74.9885843
4.73444E−18
2.02672E−16


Cisd3
0.352850049
9.208350817
74.66564795
5.57579E−18
2.38046E−16


Top1
−0.28395075
9.452133131
74.61436731
5.72252E−18
2.43653E−16


Sppl3
0.331427267
9.125075068
73.91656836
8.14895E−18
3.46035E−16


Usmg5
−0.19994212
10.00954642
73.69959983
9.09573E−18
3.85207E−16


Bst2
−0.31574848
9.349556332
73.67662979
 9.2022E−18
3.88676E−16


Gm26740
−0.290618009
9.614149283
73.6072547
9.53137E−18
4.01509E−16
















TABLE 2C







Small Intestine LPL Ctrl vs KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Malat1
−1.270390299
14.65408192
1391.007551
 1.8902E−304
 2.5698E−300


Dnajb1
−2.989003621
10.24133724
1248.384643
 1.8627E−273
 1.2662E−269


Ubb
−0.928036045
12.68983308
1129.213594
 1.4776E−247
 6.6959E−244


Hsp90aa1
−1.73334477
10.38503603
848.7603464
 1.3523E−186
 4.5961E−183


Hsp90ab1
−1.124878483
10.88661857
744.3402084
 6.8242E−164
 1.8555E−160


Hspa1a
−3.477661443
10.7136333
610.5048084
 8.6886E−135
 1.9687E−131


Hspe1
−1.481859098
10.17562846
609.4431434
 1.4787E−134
 2.8718E−131


Hspa1b
−2.45826073
9.673476745
541.557568
 8.6415E−120
 1.4685E−116


Hspa8
−0.733021848
11.94760636
536.6824715
 9.9348E−119
 1.5007E−115


Dnaja1
−1.142985442
10.58020182
500.7270965
 6.6034E−111
 8.9774E−108


Hsph1
−1.674119669
9.693521287
391.0098358
4.98925E−87
6.16626E−84


Pfn1
0.556969656
12.36179331
354.5323953
4.36681E−79
4.94723E−76


Ifi27l2a
−1.526203755
10.06603444
308.5419345
4.53792E−69
4.74562E−66


Ddx5
−0.569218691
11.28301838
295.0912662
3.86588E−66
3.75404E−63


Crip1
1.063247863
11.26439747
275.0510604
8.99683E−62
8.15413E−59


Ubc
−0.684801113
11.25718429
269.2572026
 1.6474E−60
1.39978E−57


Jun
−1.621216633
10.08346217
267.8801831
3.28792E−60
2.62937E−57


Lgals1
1.123792206
11.27737133
266.4474621
 6.7482E−60
5.09677E−57


Cd52
0.579508154
11.896613
259.9242984
1.78245E−58
1.27539E−55


Hspd1
−1.123244696
9.873827325
248.7759061
4.80071E−56
3.26328E−53


Cd160
1.612792846
9.910004584
244.9841777
 3.2209E−55
2.08515E−52


Rbm3
0.606449645
10.9936177
229.5941443
7.30892E−52
4.51658E−49


S100a6
1.204174767
10.87443069
219.9356841
9.34141E−50
5.52159E−47


Gzma
1.993209068
11.53461012
215.7661412
7.58466E−49
4.29639E−46


Rps29
−0.33975966
12.45913805
214.1327455
1.72289E−48
 9.3691E−46


Slc25a5
0.672711688
10.63606639
207.9571703
3.83322E−47
2.00433E−44


Cd7
1.532985299
10.09719296
198.2226571
5.10148E−45
2.56869E−42


Fos
−1.555883912
9.951733106
191.3239371
1.63437E−43
7.93543E−41


Junb
−0.603167841
12.24822312
187.5138271
1.10924E−42
5.20006E−40


Vim
0.928746254
10.32884884
180.8919276
3.09513E−41
1.40261E−38


S100a4
1.526515304
9.992761306
176.514377
2.79585E−40
1.22611E−37


Klf6
−0.926855403
10.30217968
170.4261312
5.97167E−39
2.53703E−36


AY036118
−1.061137817
9.604280179
168.5762641
1.51402E−38
6.23731E−36


Eif4a2
−0.786277362
10.01209351
167.6815977
2.37437E−38
9.49399E−36


Rplp0
0.305778795
12.4630419
163.5750167
1.87328E−37
7.27635E−35


Zfp36l2
0.955324495
10.26398104
162.744194
2.84515E−37
1.07444E−34


Gm42418
−1.048481014
9.719045857
160.8447438
 7.3975E−37
2.71808E−34


Eif3f
0.463631301
10.85999602
157.5770827
 3.8287E−36
1.36977E−33


Gadd45b
−1.017411734
9.987572676
156.6695014
6.04462E−36
2.10709E−33


Dusp1
−0.925508201
10.28518602
154.6952798
1.63224E−35
5.54759E−33


Ier5
−0.849926882
9.977632158
153.3008753
3.29244E−35
1.09172E−32


Rpl24
0.336154281
11.8173782
153.1549619
3.54329E−35
1.14693E−32


Itgb7
0.730684655
10.21660441
145.9816063
1.31027E−33
 4.1426E−31


Ppp1r15a
−0.850080959
9.962305144
145.3477627
1.80274E−33
5.57004E−31


mt-Nd2
−0.666229752
10.16694083
142.9422572
 6.0514E−33
 1.8282E−30


Rps27
−0.280332283
13.43297512
140.2437348
2.35459E−32
6.95883E−30


Emp3
0.853721822
10.01923353
138.8508125
4.74812E−32
1.37342E−29


Jund
−0.511687126
11.88052936
138.1873795
6.63147E−32
1.87823E−29


Arpc5
0.641891287
10.33312177
137.1516697
1.11718E−31
 3.0996E−29


Prkca
−0.936438709
9.803809383
135.1375687
3.08067E−31
8.37635E−29


Tagln2
0.728752002
10.27956689
132.3672087
1.24352E−30
3.31485E−28


Cacybp
−0.820907994
9.761275879
127.6377263
 1.3472E−29
3.52215E−27


Itgae
1.141170294
9.754012995
127.2951357
1.60103E−29
4.10679E−27


Cd47
0.621464194
10.28476905
123.8215437
9.21714E−29
 2.3205E−26


Rpl23a-ps3
−0.389746504
10.83309006
119.834953
6.87492E−28
1.69935E−25


H2afz
0.681004033
10.6429052
118.7869428
1.16605E−27
2.83079E−25


S100a10
0.525127377
10.79175384
117.9491163
1.77894E−27
4.24292E−25


Fosb
−1.063020116
9.629543946
117.8377317
1.88169E−27
4.41063E−25


Cox5a
0.592668928
10.24515525
115.5012812
6.11196E−27
1.40234E−24


Rpl38
−0.268147527
11.78716014
115.4764231
6.18905E−27
1.40234E−24


Ptprcap
0.548197307
10.41240534
109.6451952
1.17198E−25
2.61197E−23


Arhgdib
0.404256062
10.95537113
109.2336833
1.44238E−25
3.16277E−23


Rpl37a
−0.219867372
12.67658574
108.9253496
1.68514E−25
3.63643E−23


Rps27rt
−0.377704095
11.22532454
107.7024833
3.12311E−25
6.63417E−23


Atf3
−0.833608127
9.564432286
107.484863
3.48557E−25
7.29021E−23


Rpl32
0.234928384
12.53119065
107.2016913
4.02093E−25
8.28252E−23


Rpl29
0.348661409
11.2510885
106.283271
6.39137E−25
1.29688E−22


Zfp36
−1.069360095
9.720937454
105.7272946
8.46138E−25
1.69165E−22


Nfkbia
−0.548369836
11.02410921
105.552441
9.24194E−25
1.82093E−22


Tnfaip3
−0.556203662
10.4976442
105.1592788
1.12702E−24
2.18884E−22


Rpl3
0.23946729
12.12971157
103.4841404
2.62487E−24
5.02607E−22


Lcp1
0.476475494
10.58352627
101.648977
6.62859E−24
1.25161E−21


Dnaja4
−0.883775551
9.627504548
101.2617633
8.05967E−24
1.50097E−21


Fus
−0.583225585
10.0621585
100.5551387
1.15146E−23
2.11543E−21


Eef2
0.30089659
11.36578563
98.60722272
3.07894E−23
 5.5811E−21


Gm10073
−0.587468651
9.971221351
98.04010631
4.09994E−23
7.33404E−21


H2-Q6
−0.666621999
9.913841776
96.58296852
8.55813E−23
1.51101E−20


Lsp1
0.478483224
10.575597
96.3577739
9.58906E−23
1.67132E−20


Cxcr6
0.682928486
10.4358259
95.40449085
1.55201E−22
2.67084E−20


Rplp1
−0.248800579
11.77289572
95.07571795
1.83241E−22
 3.0755E−20


Itpkb
−0.755356088
9.788344057
95.07750247
1.83076E−22
 3.0755E−20


Bag3
−0.73666804
9.556132624
92.98437325
5.27089E−22
8.73875E−20


H2-Q4
−0.600298455
10.03136803
92.46838803
6.84088E−22
 1.1205E−19


Cd69
−0.675277132
10.22899337
91.3465498
 1.2059E−21
1.95169E−19


Son
−0.580002512
9.985249388
89.75818
2.69123E−21
4.30439E−19


Gm8797
−0.760754138
9.695703486
89.16169111
3.63827E−21
5.75142E−19


Reep5
0.715048932
9.86923952
89.08940618
3.77366E−21
5.89689E−19


Ermn
0.936240345
9.607995489
88.5867298
4.86542E−21
7.51652E−19


Cyba
0.440199696
10.55096537
86.79334234
1.20474E−20
1.84028E−18


Emp1
−0.831580324
9.618680989
86.48342872
1.40913E−20
2.12857E−18


Hnrnpf
0.389350328
10.63476331
86.40296267
1.46765E−20
 2.1926E−18


Capzb
0.449426755
10.36936752
85.10253926
2.83287E−20
4.18617E−18


Arpc2
0.346828272
10.81151028
84.90559109
3.12957E−20
4.57489E−18


Cd48
0.616642092
10.0606017
83.06747655
7.92997E−20
1.14689E−17


Clic1
0.426604672
10.51946677
82.45485129
1.08112E−19
1.54713E−17


Actn2
0.736387991
10.03167641
81.77982597
1.52123E−19
2.15429E−17


Atp51
0.360702257
10.67458586
80.93617442
2.33127E−19
3.26738E−17


Dedd2
−0.731727354
9.632338182
79.43149123
 4.9924E−19
6.92568E−17


Ltb4r1
0.814916101
9.601858422
78.85441688
6.68598E−19
 9.1814E−17


Ctsw
0.566396655
10.24368719
78.62204359
7.52055E−19
1.02242E−16


Prelid1
0.656109752
9.891171439
78.22322584
9.20301E−19
1.23876E−16


Tra2b
−0.488661709
10.19577356
78.08892868
9.85045E−19
1.31291E−16


AA467197
0.877651163
9.704984918
77.24922157
1.50691E−18
1.98897E−16


Pycard
0.6838354
9.919490954
77.04275231
1.67297E−18
2.18693E−16


Rac2
0.29382085
11.24349839
76.89574027
1.80225E−18
2.31148E−16


Pim1
−0.515291779
11.06070107
76.91273522
1.78681E−18
2.31148E−16


H2-Q7
−0.386384264
10.55176719
76.55241546
2.14445E−18
2.72465E−16


Sdhb
0.633252714
9.861109849
76.36407516
2.35904E−18
2.96955E−16


Ctla4
−0.596909051
10.20745116
75.50013879
3.65381E−18
4.55721E−16


Clk1
−0.544683385
10.07692244
75.47808739
3.69485E−18
4.56649E−16


Gngt2
−0.726299968
9.753641865
74.79477041
5.22279E−18
6.39674E−16


Ltb
0.532854208
10.5105756
74.55802359
 5.8882E−18
7.14732E−16


Nkg7
0.509213128
11.37225605
74.38601574
6.42425E−18
 7.729E−16


Maff
−0.79964788
9.685276468
73.36704807
1.07648E−17
1.28375E−15


Uba52
−0.358108045
10.48612483
72.43979314
1.72206E−17
2.03578E−15


Cyb5a
0.670808798
9.838120266
72.29714293
1.85115E−17
2.16952E−15


Hmgb2
0.48219955
10.90748683
71.21488181
3.20363E−17
 3.7225E−15


Ccl5
0.756221662
13.88516502
71.19613316
3.23421E−17
 3.7262E−15


Gm9843
−0.351089612
10.56964271
70.95037373
3.66324E−17
4.18502E−15


Rbm39
−0.311869482
10.84233663
70.52963247
4.53405E−17
 5.1367E−15


Myl12a
0.366072373
10.71572431
70.13817584
5.52925E−17
6.21241E−15


Dnajb4
−0.770020972
9.617001768
70.05549857
5.76592E−17
6.42522E−15


Gm11808
−0.372654204
10.38068834
69.90975696
6.20806E−17
6.86167E−15


Fyn
−0.550598359
9.891289908
69.7258551
 6.8147E−17
7.47143E−15


Actg1
0.324605067
11.94604458
69.47463064
7.74037E−17
8.41843E−15


Itm2b
0.314557643
11.12684555
69.30828715
 8.4215E−17
9.08653E−15


Ap2s1
0.644724334
9.796122343
68.94810314
1.01089E−16
1.08213E−14


Ass1
0.738922713
9.844567328
68.21415472
1.46669E−16
1.55779E−14


Btf3
0.303005054
10.81309008
67.9718735
1.65844E−16
1.74779E−14


Glipr2
0.730000014
9.753269937
67.88661614
1.73173E−16
1.81099E−14


Avl9
−0.653986116
9.731535525
67.59763449
2.00508E−16
2.08084E−14


Ccr9
0.832857974
9.857154544
66.4667878
3.55839E−16
3.66487E−14


Phlda1
−0.788431684
9.719239609
66.02764339
4.44643E−16
4.54505E−14


Tcf7
−0.644655858
9.792717352
65.67511056
5.31732E−16
5.39469E−14


Selplg
0.423459877
10.38010922
65.19224058
6.79365E−16
6.84146E−14


mt-Atp8
−0.67106869
9.60986082
65.17736304
6.84513E−16
6.84262E−14


Rps15
−0.216414105
11.50041078
64.92079989
7.79697E−16
7.73721E−14


mt-Nd4
−0.330338383
10.75014686
64.82286657
8.19427E−16
8.07254E−14


Anxa2
0.722644648
9.881882506
64.73674853
8.56034E−16
 8.3725E−14


Cmtm7
0.647790672
9.807118552
64.60455779
9.15434E−16
8.88951E−14


Tnfsf8
0.902577267
10.03565206
64.1198142
1.17078E−15
1.12885E−13


Eno1
0.487848032
10.1319159
64.08709309
1.19039E−15
1.13967E−13


Nfkbiz
−0.574034994
9.90564368
62.46141902
2.71716E−15
 2.5832E−13


Fxyd5
0.312416423
10.90172663
62.20646567
3.09271E−15
2.91982E−13


Eif3h
0.357810898
10.43681116
60.86483882
 6.1131E−15
5.73156E−13


Epsti1
0.463984054
10.26085662
60.42054667
7.66091E−15
7.13357E−13


Cdc42
0.336991213
10.5652973
59.55545044
1.18896E−14
1.09959E−12


Oas1a
−0.500430515
9.548339965
59.48066541
1.23502E−14
1.13446E−12


Tox
−0.678206587
9.574160554
59.40704481
1.28209E−14
 1.1698E−12


Eif1
−0.213223134
11.84549357
58.9703578
1.60065E−14
1.45072E−12


Rsrp1
0.438310679
10.37261005
58.78113414
1.76223E−14
1.58659E−12


Mbd2
−0.588160192
9.73972323
58.59763888
1.93448E−14
1.73022E−12


Sumo2
0.349177283
10.46272601
58.53783873
1.99419E−14
1.77196E−12


Rpl13a
0.155012279
13.10930771
58.46581604
2.06854E−14
1.82609E−12


Tm2d2
0.70831406
9.63412223
58.26594334
2.28974E−14
2.00832E−12


Fam101b
−0.645014148
9.557985731
58.10375522
2.48651E−14
2.16693E−12


Cotl1
0.387933321
10.63154185
57.52288348
 3.3407E−14
2.87448E−12


Anxa6
0.529264421
9.947806186
57.53218843
3.32493E−14
2.87448E−12


Ppp1ca
0.358071833
10.45650421
57.42631271
3.50882E−14
3.00015E−12


Lat
0.30090055
10.83480524
57.38755335
3.57865E−14
3.04073E−12


Dusp10
−0.701807188
9.734497108
57.23375587
3.86972E−14
3.26763E−12


Plac8
0.676955079
10.50997571
56.88041406
4.63136E−14
3.88662E−12


Rasgrp1
−0.606007374
9.755482259
56.82249163
 4.7698E−14
3.97824E−12


Ostf1
0.446931969
10.18723338
56.7994366
4.82605E−14
4.00062E−12


Coro1a
0.296036382
11.05941162
56.57479441
5.41009E−14
4.45759E−12


3830403N18Rik
0.585483615
9.565458172
56.42066917
5.85121E−14
 4.792E−12


Lncpint
−0.683465689
9.609082259
56.32648915
6.13829E−14
4.99701E−12


Uhrf2
−0.636453151
9.805742233
56.23935181
6.41644E−14
5.19235E−12


Slc5a3
−0.573447632
9.553448168
56.14658929
6.72642E−14
5.41099E−12


Dnajc15
0.456892242
10.09941767
55.77454562
8.12771E−14
6.49978E−12


Rpsa
0.216885157
11.60513144
55.21856755
1.07845E−13
8.57401E−12


Arpc1b
0.273302652
10.796252
55.10881601
1.14038E−13
9.01366E−12


Cxcr5
−0.518113656
9.543138573
54.75402302
1.36599E−13
1.07345E−11


Klf4
−0.752577219
9.566058556
54.6749753
1.42206E−13
1.11108E−11


Rpl4
0.194418668
11.72659741
54.3921545
1.64217E−13
1.27573E−11


Ifngr1
0.390565787
10.81929358
54.24193902
1.77263E−13
1.36925E−11


Ifng
−0.868111197
9.899362081
54.09247489
1.91272E−13
1.46802E−11


Rps6
0.165515494
12.27313172
54.08288209
1.92208E−13
1.46802E−11


Rhoh
−0.534449576
9.837142269
54.02000635
1.98459E−13
1.50729E−11


Cfl1
0.250192333
11.29422153
53.90728076
2.10177E−13
1.58742E−11


Sptssa
0.543646713
9.96326749
53.71520935
2.31762E−13
1.74078E−11


mt-Cytb
−0.262082792
11.3111964
53.61065466
 2.4443E−13
1.82584E−11


Rps16
−0.163309899
12.29143504
53.35615702
2.78238E−13
2.06702E−11


Bcl2
−0.704176859
9.768025777
52.18045653
5.06275E−13
3.74066E−11


Txk
−0.607016555
9.712272046
52.10336758
5.26546E−13
 3.8694E−11


Acp5
0.578040126
9.78903337
51.61203372
6.76258E−13
4.94287E−11


Tspo
0.428503603
10.1185085
51.38616936
7.58712E−13
5.51588E−11


Ccl20
−0.810411094
9.550654384
51.08543215
8.84322E−13
6.39487E−11


Rpl22l1
0.261648578
11.13468717
50.8848051
9.79489E−13
7.04558E−11


Ywhah
0.468443163
10.00113273
50.82097896
1.01186E−12
7.24015E−11


Srrm2
−0.411464931
10.16628193
50.49824308
1.19272E−12
8.45462E−11


Cox4i1
0.260656313
10.85377808
50.49607584
1.19403E−12
8.45462E−11


AW112010
0.291301825
11.71248698
50.43757707
1.23016E−12
 8.6653E−11


Pnrc1
−0.326990414
10.78196761
50.29780369
1.32097E−12
9.25702E−11


mt-Nd1
−0.2653544
11.28494672
50.0634124
1.48857E−12
 1.0378E−10


Saraf
−0.365543292
10.30384933
49.9328995
1.59095E−12
1.10352E−10


Ppib
0.404822673
10.10011401
49.89019449
1.62595E−12
1.12207E−10


Pgls
0.555219426
9.786227624
49.5295049
1.95411E−12
1.34172E−10


Dusp2
0.724800828
9.811340529
49.34390873
 2.148E−12
1.46744E−10


Plp2
0.604877901
9.591056513
49.25934175
2.24263E−12
1.52443E−10


Chst12
0.650249975
9.626540055
48.68536907
 3.005E−12
2.03249E−10


Ldha
0.363117284
10.40180441
48.62626572
3.09694E−12
 2.0843E−10


Fcer1g
−0.360864211
9.537643508
48.33462077
3.59351E−12
2.40659E−10


Actr3
0.317519138
10.50564793
47.9423529
4.38937E−12
2.92517E−10


Lpxn
0.464741167
9.978535981
47.92799909
4.42162E−12
2.93229E−10


Ybx3
0.60013217
9.599423261
47.61601782
5.18432E−12
 3.4214E−10


mt-Nd4l
−0.576765365
9.612318145
47.30905404
6.06315E−12
3.98163E−10


Ccnl1
−0.505607902
9.806469989
47.29981488
 6.0918E−12
3.98163E−10


Tmed2
0.388398507
10.11413497
47.23996875
6.28066E−12
4.08543E−10


Hnrnpk
0.324953239
10.40058528
46.9167236
 7.4068E−12
4.79502E−10


Gpr171
0.492019928
9.992435057
46.74373012
8.09034E−12
5.21271E−10


Ifi27
−0.48213806
9.837918078
46.66378408
8.42721E−12
5.40415E−10


Rpl8
0.187142948
11.68698224
46.50058276
9.15912E−12
5.84593E−10


Furin
−0.58250301
10.5517053
46.2400125
1.04618E−11
6.64621E−10


Chd3
−0.531844197
9.761077098
46.22174406
1.05599E−11
6.67726E−10


Socs3
−0.606438847
9.77952663
45.945977
1.21559E−11
7.65092E−10


Klrd1
0.740622758
9.641291475
45.83007932
1.28968E−11
8.07981E−10


Atp5f1
0.407703841
10.0510207
45.80329176
1.30744E−11
8.15349E−10


mt-Co1
0.185405435
12.35512272
44.9562193
2.01489E−11
 1.2508E−09


Vasp
0.352930373
10.31326066
44.93521323
2.03662E−11
1.25854E−09


Mxd1
−0.513254014
9.919607654
44.40709369
2.66719E−11
1.64074E−09


Lgals3
0.683541289
10.03825331
44.0922441
 3.1326E−11
1.91836E−09


Sh2d1a
−0.486118075
9.853138169
44.01761352
3.25434E−11
1.98398E−09


Srsf5
−0.338591946
10.31310722
43.5233511
 4.1893E−11
2.54257E−09


Ywhae
0.464501426
9.922516842
43.45147215
4.34605E−11
2.61436E−09


Adam8
0.535877549
9.576468918
43.45269502
4.34333E−11
2.61436E−09


Hmgb1
0.323083852
10.55704335
43.41280646
4.43278E−11
2.65478E−09


Cisd3
0.602086754
9.632969394
43.28209301
4.73901E−11
2.82574E−09


Ccdc117
−0.570173683
9.594031621
42.87429725
5.83726E−11
3.46539E−09


Ubald2
−0.36571417
10.66143541
42.56689302
6.83058E−11
4.03747E−09


Tram1
0.459368816
9.883728186
42.3939177
7.46217E−11
 4.3917E−09


Ddx60
−0.373678564
9.541837476
41.90575092
9.57805E−11
5.61266E−09


Rpl18
0.16500821
11.86839686
41.52080501
1.16623E−10
6.80469E−09


Ftl1
−0.254126258
11.02867874
41.24955394
1.33982E−10
7.78415E−09


Cnn2
0.351443965
10.25976365
41.23898797
1.34709E−10
7.79304E−09


Arf5
0.335902191
10.19854297
41.17413621
1.39253E−10
 8.0218E−09


Rps28
−0.17669445
11.84765533
41.03874747
1.49241E−10
8.56089E−09


Nrip1
−0.533322514
9.859993551
40.99470604
1.52642E−10
 8.7192E−09


Uqcrfs1
0.407154567
9.966955579
40.84086269
1.65144E−10
 9.3547E−09


Ddx24
−0.456807659
9.828797982
40.84178616
1.65066E−10
 9.3547E−09


Spcs3
0.558898275
9.669879283
40.41720553
2.05127E−10
1.15714E−08


Psmd13
0.539440109
9.697470476
40.40366824
2.06553E−10
1.16037E−08


Sdcbp
0.448461817
9.891466083
40.3625637
2.10945E−10
1.18016E−08


Rtp4
−0.563163546
9.565691325
39.98728135
2.55622E−10
1.42425E−08


Cd28
−0.364314583
10.50430705
39.97688609
2.56986E−10
1.42601E−08


Gm10076
−0.363789063
10.01444869
39.8563226
2.73348E−10
1.51064E−08


1500009L16Rik
0.542202591
9.583684757
39.7287938
2.91792E−10
1.60604E−08


S100a13
0.386023024
10.11272451
39.59415967
3.12617E−10
1.71372E−08


Tprgl
0.439315767
9.937270565
39.49031889
 3.2969E−10
1.80005E−08


Uqcrh
0.258509129
10.66055691
39.26239503
3.70509E−10
2.01483E−08


Hnrnpdl
−0.425883748
9.851559277
39.24467677
3.73886E−10
2.02509E−08


Trps1
−0.581094547
9.593491566
39.22474925
3.77722E−10
2.03775E−08


Sh3bgrl3
0.234852888
11.18097545
39.21492611
3.79627E−10
2.03993E−08


Nr4a1
−0.490052945
9.985650751
39.19056878
3.84393E−10
2.05741E−08


Zfand2a
−0.537861078
9.566631043
39.02336362
4.18764E−10
2.23259E−08


Irf1
−0.514113223
9.768522493
38.96928106
4.30527E−10
2.28633E−08


Limd2
0.322761237
10.43727909
38.93205538
4.38815E−10
2.31229E−08


Zbtb20
−0.581062467
9.584425294
38.93617746
 4.3789E−10
2.31229E−08


Asb2
−0.544248262
9.850342678
38.84496818
4.58835E−10
2.40844E−08


Tiparp
−0.580123163
9.609123279
38.4953443
5.48845E−10
2.86982E−08


Isg15
−0.584150245
9.800573377
38.45870296
5.59246E−10
2.91301E−08


Csrnp1
−0.517948042
9.779414893
38.26534917
6.17494E−10
3.20414E−08


Tmem50a
0.386836955
10.00814313
38.15703896
6.52738E−10
3.37414E−08


Actn1
−0.533996189
9.567435546
38.08192888
6.78355E−10
3.49327E−08


Psmd8
0.424531567
9.892382532
38.00538221
7.05497E−10
3.60573E−08


Gm26699
−0.473480345
9.765120668
38.00550982
7.05451E−10
3.60573E−08


Cd244
0.388278993
9.55144543
37.91921304
7.37355E−10
3.75444E−08


Rps11
0.141420944
12.35636328
37.86091045
7.59723E−10
3.85173E−08


Ilk
0.536823666
9.680259126
37.85474135
7.62129E−10
3.85173E−08


Sdcbp2
−0.542086538
9.622445807
37.59342632
8.71377E−10
4.38754E−08


Ahr
−0.59092619
9.672948429
37.54436013
8.93574E−10
4.48271E−08


Rps21
−0.21136896
10.97596554
37.1282141
1.10612E−09
5.52855E−08


Plin2
−0.537264515
9.575959069
37.10475461
 1.1195E−09
5.57497E−08


Rpl10a
0.200698396
11.2570968
37.0300252
1.16324E−09
5.77163E−08


Sdf2l1
0.529962562
9.709620662
37.00327913
1.17931E−09
5.83007E−08


Cox5b
0.305999662
10.32202341
36.9673266
1.20125E−09
5.91705E−08


Apobec3
0.437401019
9.902621042
36.93631025
1.22052E−09
5.99022E−08


Rpl9-ps6
−0.351320591
9.989161867
36.53264344
1.50131E−09
7.34183E−08


Gem
−0.682793999
9.688105676
36.46631611
1.55327E−09
7.56873E−08


Eprs
0.53788575
9.694503208
36.43986079
 1.5745E−09
7.64476E−08


Gstp1
−0.504141129
9.64657452
36.38114233
1.62266E−09
7.85054E−08


Trp53inp1
−0.513550556
9.595006556
36.2425247
1.74227E−09
8.39935E−08


Ahnak
0.498211225
9.785411173
36.12837239
1.84737E−09
8.87458E−08


Arpc4
0.366807267
10.06345714
36.05320569
1.92003E−09
9.19111E−08


Rap1b
0.315806112
10.27367424
36.01786076
1.95517E−09
9.32651E−08


Kcnk5
−0.515305339
9.574931238
35.71192387
 2.2876E−09
1.08741E−07


Cd9
−0.471749722
9.565476632
35.54177757
2.49639E−09
1.18252E−07


Ostc
0.453743376
9.79984885
35.34117534
 2.7672E−09
1.30625E−07


Gnai2
0.271442641
10.46001918
35.19685572
2.98004E−09
1.40186E−07


Npm3
0.426799674
9.885664227
34.91904872
3.43702E−09
1.61125E−07


Hif1a
−0.430822834
9.908262886
34.69387483
3.85844E−09
1.80259E−07


Spcs2
0.323040264
10.17009625
34.61830814
4.01116E−09
1.86752E−07


Ap2m1
0.423344592
9.842161501
34.58702108
4.07615E−09
1.89101E−07


Edf1
0.331625317
10.10367538
34.58068966
4.08943E−09
1.89101E−07


Izumo1r
−0.621017876
9.606866954
34.41958125
4.44231E−09
 2.0462E−07


Manf
0.417472957
9.905200221
34.41397814
4.45512E−09
 2.0462E−07


Tgfb1
0.456071377
9.908533916
34.35865156
4.58358E−09
2.09811E−07


Rps3
0.136732909
11.97017084
34.23146089
4.89315E−09
2.22666E−07


Degs1
0.499847178
9.710625605
34.22985792
4.89718E−09
2.22666E−07


Ciapin1
0.505447675
9.69209499
33.8265408
6.02513E−09
2.73039E−07


Btg2
0.338891136
10.81509287
33.75955166
6.23621E−09
2.81665E−07


Hint1
0.319099291
10.22665553
33.64099662
 6.6281E−09
 2.9711E−07


Casp4
−0.476037532
9.726331048
33.63641218
6.64373E−09
 2.9711E−07


Anxa11
0.487304216
9.703047741
33.64158832
6.62608E−09
 2.9711E−07


Rnf115
0.477692622
9.719266495
33.60418158
6.75474E−09
3.01084E−07


Coq10b
−0.435536512
9.823130381
33.38844922
7.54709E−09
3.35303E−07


Gltscr2
0.281894891
10.46438057
33.12678111
8.63413E−09
3.82348E−07


Ero1l
0.519056603
9.611552364
33.00007472
9.21553E−09
 4.0677E−07


Tomm7
−0.313476679
10.05823488
32.94049529
9.50232E−09
4.18071E−07


Ywhaq
0.413376988
9.880284734
32.91496101
9.62795E−09
4.22232E−07


Psmb8
0.247937082
10.58696086
32.69682093
1.07713E−08
4.70856E−07


Rhob
−0.466893188
9.565551549
32.68298283
1.08483E−08
 4.727E−07


Rps10
0.169459818
11.27074258
32.67170702
1.09114E−08
4.73931E−07


Cd82
0.343430004
10.23707609
32.59801177
1.13331E−08
4.90678E−07


Abcb1a
−0.490964544
9.634618666
32.5330167
1.17185E−08
5.05754E−07


Ecm1
−0.428948374
9.548168048
32.5121924
1.18447E−08
5.09585E−07


Chchd2
−0.242250124
10.4145197
32.4935448
1.19589E−08
5.12875E−07


Stmn2
0.31474375
9.547934398
32.44033935
1.22908E−08
5.25453E−07


Ptprk
0.322461174
9.547124172
32.39925874
1.25534E−08
5.34997E−07


Zfp280d
−0.455933504
9.577105785
32.39298477
 1.2594E−08
 5.3505E−07


RP24-48411.3
0.45581967
9.573621121
32.28892999
1.32868E−08
5.62724E−07


Vps37b
−0.330737492
10.53077373
32.22402668
1.37381E−08
5.80031E−07


Tuba4a
−0.495588026
9.695802967
32.05135878
 1.5015E−08
6.31978E−07


Cd27
−0.623155836
9.654241658
31.96170218
1.57242E−08
6.59787E−07


Rps19
0.147463744
12.62869486
31.76897993
1.73644E−08
7.26366E−07


Ndufa11
0.395844467
9.869001574
31.75589903
1.74817E−08
7.29032E−07


Pglyrp1
0.554448261
9.675823263
31.7328135
1.76908E−08
7.35493E−07


Gpr132
−0.347377843
10.08111363
31.62652046
 1.8686E−08
7.74501E−07


Dnajb2
−0.398965682
9.552710551
31.53488229
 1.9589E−08
8.09458E−07


Sfr1
0.436841829
9.79905978
31.52744207
1.96642E−08
8.10103E−07


Stmn1
0.869255435
9.718320163
31.23884134
2.28155E−08
 9.3709E−07


Chn2
0.50726472
9.602283449
31.11036095
2.43767E−08
9.98195E−07


Atp8a2
0.515838144
9.630965479
30.97464046
2.61422E−08
1.06728E−06


Cd40lg
−0.471028099
9.806462091
30.89285541
2.72674E−08
1.10895E−06


Cxcl10
−0.727462227
9.649729541
30.88867223
2.73262E−08
1.10895E−06


Egr1
−0.58434076
9.573320341
30.82712287
2.82068E−08
1.14128E−06


Nubp1
0.473403814
9.680677072
30.783805
2.88435E−08
1.16358E−06


Eif3m
0.33858974
10.03086842
30.533751
3.28108E−08
1.31971E−06


Gm26917
−0.386612599
9.867968155
30.27290912
3.75332E−08
 1.5052E−06


Atp5a1
0.330745474
10.05398237
30.25219304
3.79362E−08
1.51689E−06


Sytl1
0.450310542
9.57672802
30.16768361
3.96258E−08
 1.5798E−06


Mier1
0.429759379
9.849073912
29.99380834
4.33428E−08
1.71869E−06


Tagap
−0.481023723
9.753295815
29.99293376
4.33624E−08
1.71869E−06


Ahsa1
−0.415991957
9.7343473
29.8494272
4.66935E−08
1.84534E−06


Acot9
0.486670609
9.629157206
29.79529145
4.80157E−08
 1.8921E−06


Rps3a1
0.144785051
11.73486958
29.76024635
4.88915E−08
1.92104E−06


Serinc3
0.488696277
9.653334653
29.75265681
4.90833E−08
1.92302E−06


Rplp2
−0.134128458
11.87909328
29.57476782
5.38008E−08
2.10179E−06


Eif5a
0.271331035
10.45412985
29.306058
6.18022E−08
2.40745E−06


Tmem176a
0.659501681
9.760786899
29.24814254
6.36772E−08
2.47341E−06


Sh2d2a
0.372695089
10.07434142
29.15725241
6.67355E−08
2.58481E−06


Prmt1
0.433541135
9.752599757
29.09939463
6.87585E−08
2.64808E−06


Wdr89
−0.260435474
10.29803674
29.10467471
6.85713E−08
2.64808E−06


Msn
0.303992139
10.11460226
28.9457299
7.44347E−08
2.85859E−06


Ict1
0.436674726
9.753338871
28.93128095
 7.4992E−08
2.87188E−06


Ythdc1
−0.434898908
9.695559663
28.82288915
7.93083E−08
3.02864E−06


Rpl13-ps3
−0.319707654
9.989340753
28.73260083
8.30931E−08
3.16429E−06


Gimap6
−0.244548357
10.59710866
28.72414041
8.34569E−08
3.16926E−06


Tmem30a
0.437623733
9.744492786
28.69389532
8.47705E−08
3.21018E−06


Rac1
0.311594293
10.06053352
28.63136373
8.75526E−08
3.29865E−06


Sesn1
−0.368525972
9.551406608
28.63049009
8.75921E−08
3.29865E−06


4930503L19Rik
−0.444136554
9.569307661
28.62410095
8.78815E−08
3.30041E−06


Gramd3
0.454475792
10.22334111
28.60513397
8.87466E−08
3.32372E−06


Nt5c
0.418853625
9.783355854
28.57256775
9.02518E−08
 3.3708E−06


Zyx
0.49949057
9.653615873
28.51246827
 9.3097E−08
3.46755E−06


Jmjd1c
−0.470611575
9.671839485
28.41495083
9.79063E−08
3.63671E−06


Oaz1
0.157157942
11.32703266
28.22495552
1.08003E−07
4.00082E−06


Atp5o
0.340449858
9.966789533
28.09237029
1.15661E−07
4.27285E−06


Slc25a4
0.403613648
9.854301686
28.07715311
1.16574E−07
4.29491E−06


2810417H13Rik
0.864238455
9.675098575
28.05895758
1.17675E−07
4.32377E−06


Cmpk1
0.392640439
9.806513171
27.94059504
1.25098E−07
 4.5841E−06


Stat3
−0.40036914
9.799207752
27.92008019
1.26431E−07
 4.6205E−06


Tmem160
0.361394762
9.896444569
27.89373698
1.28164E−07
4.67128E−06


Atf4
−0.416309212
9.732097606
27.83823326
1.31894E−07
4.79437E−06


Zfp706
0.377304609
9.852188098
27.77685472
1.36145E−07
4.93572E−06


Prr13
0.259162854
10.44540802
27.68287373
1.42922E−07
5.16764E−06
















TABLE 2D







Colon IEL Ctrl vs KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hspa1a
−4.912418231
10.69640911
4353.406085
0
0


Ubb
−0.77403293
12.42365996
2268.704696
0
0


Malat1
−0.969266612
14.67682077
2468.851731
0
0


Rbm3
0.950879034
10.81487562
1615.458299
0
0


Dnajb1
−2.106865401
9.893638618
1434.569266
0
0


Jun
−2.095847257
10.05710788
1333.458514
 6.0574E−292
 1.4803E−288


Fos
−2.354918413
10.11294467
1287.060873
 7.3297E−282
 1.5354E−278


Ubc
−0.885778987
10.8737827
1160.271008
 2.6281E−254
 4.8169E−251


Hspa1b
−1.572519816
9.464180989
1005.757106
 1.0067E−220
 1.6401E−217


Rps27rt
−0.855944525
10.45058647
960.5894229
 6.6203E−211
 9.7073E−208


Rps27
−0.456664488
12.77091707
884.4000389
  2.416E−194
 3.2205E−191


Rsrp1
−0.7538665
10.47574847
825.1217025
 1.8632E−181
 2.2767E−178


Rpl38
−0.450854758
11.36672195
727.8453794
 2.6346E−160
 2.9716E−157


S100a4
1.196877127
10.20124983
675.3497526
  6.858E−149
 7.1828E−146


Hsp90ab1
−0.625671337
10.70244953
672.3653519
 3.0564E−148
 2.9878E−145


Rplp0
0.358265483
12.22246018
637.178858
 1.3725E−140
 1.2578E−137


Rpl37a
−0.341973881
12.31974039
618.461248
  1.616E−136
 1.3938E−133


Asb2
−1.087110199
9.986148994
587.987702
 6.8646E−130
  5.592E−127


Dusp2
1.140087471
10.1241259
564.8664371
 7.3454E−125
 5.6687E−122


Hsp90aa1
−0.884650897
10.03922356
545.7934307
 1.0354E−120
 7.5908E−118


Uba52
−0.715686894
10.02413792
535.1932376
 2.0948E−118
 1.4627E−115


Rps29
−0.3494107
11.76226086
526.5778531
 1.5684E−116
 1.0453E−113


S100a6
0.665033272
11.40505169
473.014171
 7.0773E−105
 4.5119E−102


Rpl22l1
0.492941427
10.81346165
469.0919932
 5.0508E−104
 3.0858E−101


Slc25a5
0.48478658
10.63486828
453.0258552
 1.5835E−100
9.28738E−98


Ass1
1.043502352
9.681786921
439.9535277
1.10805E−97
6.24899E−95


Rpl32
0.270960395
12.3093303
421.5380521
1.12894E−93
 6.131E−91


Tmsb10
−0.379217961
12.59401337
403.7190476
8.53796E−90
4.47115E−87


Dynll1
0.539955191
10.37288347
403.0311001
1.20534E−89
6.09443E−87


Rps28
−0.361971479
11.20834805
399.8352948
5.98121E−89
2.92342E−86


Rpl3
0.251619694
12.09990026
380.8827502
7.99417E−85
3.78124E−82


H2-K1
−0.345378791
11.57577177
372.4393757
5.50898E−83
2.52432E−80


H2-D1
−0.260139164
12.2312739
355.6894705
2.44458E−79
1.08621E−76


Rpl29
0.374981802
11.0435012
354.0148476
5.66062E−79
2.44122E−76


Mptx1
−0.940597371
9.428866314
349.7728959
4.74892E−78
1.95256E−75


Gngt2
−0.855819774
9.686351451
349.7541182
4.79384E−78
1.95256E−75


Gm10076
−0.737584834
9.708049893
340.536643
4.87528E−76
1.93206E−73


Fosb
−0.857299353
9.419033424
337.6702214
2.05239E−75
7.91953E−73


H2-Q7
−0.485711612
10.45033154
337.4095826
2.33896E−75
8.79391E−73


Rpl24
0.274190325
11.71749233
330.3088265
8.23237E−74
3.01778E−71


Rpl41
−0.209689141
12.53198319
315.3142841
1.51906E−70
5.43268E−68


Plac8
0.788837939
10.43214592
307.2290402
8.76735E−69
3.06085E−66


Rps2
0.31789432
11.392
298.9635462
5.54091E−67
1.88945E−64


Klf6
−0.788289496
10.16162079
294.3554236
5.59207E−66
1.86356E−63


BC021614
0.881668333
9.536127554
287.8216032
1.48325E−64
 4.8331E−62


Stat1
−0.701927733
9.831890541
283.3313126
1.41143E−63
 4.4991E−61


Ifngr1
0.611436865
10.15474423
279.8164944
8.23351E−63
2.56868E−60


Crip1
0.445133772
11.63845182
278.3682928
1.70285E−62
5.20186E−60


B2m
−0.192178232
12.76962568
273.0340514
2.47551E−61
7.40783E−59


Rpsa
0.27943496
11.44702036
271.2401369
6.09017E−61
 1.786E−58


Gm11808
−0.543144555
9.925523693
269.4920183
1.46427E−60
4.20993E−58


Eif4a2
−0.603016602
9.902866294
267.009303
5.09016E−60
1.43533E−57


Tomm7
−0.49876914
9.956780815
256.1536398
1.18292E−57
3.27266E−55


Vim
0.478069679
10.67155362
255.4815988
 1.6575E−57
4.50071E−55


Rps3a1
0.242880798
11.51721161
254.1602609
3.21732E−57
8.57738E−55


Rps11
0.21510739
12.18975268
245.7818357
2.15808E−55
5.65071E−53


Cox17
−0.476013244
10.03899143
243.7133207
6.09623E−55
1.56823E−52


Rpl8
0.248159642
11.41010456
240.8276921
2.59557E−54
6.56187E−52


Ptprcap
0.389634275
10.51759166
240.350875
3.29761E−54
 8.1954E−52


Dusp1
−0.904271717
10.0322272
236.1269017
2.74943E−53
6.71914E−51


Pycard
0.564371274
9.949662724
231.922578
2.27022E−52
5.45709E−50


Bhlhe40
0.630615216
9.942561935
230.8478654
3.89438E−52
9.21022E−50


Rcbtb2
−0.742317781
9.655868727
229.5682165
 7.4047E−52
1.72342E−49


Rps6
0.203977864
12.02748398
229.4067809
8.02998E−52
1.83974E−49


Rpl10a
0.28962533
11.05684293
227.5062085
 2.0855E−51
4.70456E−49


Wdr89
−0.524129877
9.860629364
225.9165989
4.63338E−51
1.02938E−48


Ccnd2
−0.468969455
10.33483348
218.2900005
2.13493E−49
4.67232E−47


Rps21
−0.33368489
10.56800568
217.5306651
3.12624E−49
6.74118E−47


Eif3f
0.304579066
10.76016509
214.3927099
1.51198E−48
3.21307E−46


H2afz
0.505010513
10.64921003
214.215217
1.65298E−48
3.46252E−46


Gm9843
−0.436865437
10.06758138
211.9041073
5.27779E−48
1.08998E−45


Neat1
0.7478016
9.746628843
210.8010385
9.18551E−48
1.87066E−45


Rpl18
0.221574798
11.68576023
209.1814055
2.07234E−47
4.16257E−45


Ltb
0.524512641
10.49312487
205.1159497
1.59766E−46
3.16575E−44


Phlda1
−0.955844714
9.533129244
202.73707
5.27912E−46
 1.0321E−43


Cd160
0.733852101
9.934715958
202.6916375
5.40102E−46
1.04204E−43


Actg1
0.281414796
12.31487365
196.162142
1.43674E−44
2.73596E−42


Eif2s3y
0.687418848
9.547993406
195.8072505
1.71724E−44
3.22819E−42


Satb1
0.751494377
9.529465747
194.8575828
2.76754E−44
5.13677E−42


Serf2
−0.250130527
10.9456737
193.9668336
4.33015E−44
7.93662E−42


Ccl4
1.485785617
11.36531232
192.365257
9.68418E−44
1.75308E−41


Ldha
0.357711111
10.5986605
192.321415
9.89993E−44
1.77028E−41


Ndufa3
−0.395696872
10.08011666
190.6069001
2.34347E−43
4.14003E−41


Jund
−0.387305885
11.36254002
189.980835
3.21007E−43
5.60348E−41


Emp3
0.438130914
10.18357209
189.0713646
5.07031E−43
8.74659E−41


Cd52
0.210775009
12.64363478
184.4061463
5.28984E−42
9.01918E−40


Cd47
0.384229869
10.24153152
181.0529042
2.85451E−41
4.81101E−39


Bola2
−0.500931151
9.816144873
180.209206
4.36257E−41
7.26913E−39


Nop10
−0.447267852
9.964174868
178.3896367
1.08902E−40
1.79419E−38


Cotl1
0.347861789
10.82474878
177.3790784
1.81008E−40
2.94901E−38


Gpr18
0.707432613
9.62318615
176.8067404
2.41364E−40
3.88914E−38


Cbx4
−0.657383357
9.485214987
175.6581823
 4.3001E−40
6.85351E−38


Rps10
0.235850397
11.06031224
174.7426765
6.81396E−40
1.07433E−37


Alyref
0.562801095
9.80640343
173.2604322
 1.4358E−39
 2.2397E−37


Hspe1
−0.498929135
9.822812601
172.3436082
2.27677E−39
3.51413E−37


Mif4gd
0.596663991
9.624117642
171.0774302
4.30377E−39
6.57356E−37


Btg1
0.33237651
11.54672282
170.0633984
7.16671E−39
1.08335E−36


Ywhae
0.451607278
9.886722446
169.5446464
9.30296E−39
1.39193E−36


Fgl2
−0.599214624
9.754853926
167.848361
2.18335E−38
3.23378E−36


Abi3
−0.514355959
9.839809501
166.8618241
3.58601E−38
5.25817E−36


Cox7c
−0.295724359
10.44152118
166.0753922
5.32595E−38
7.73213E−36


S100a11
−0.296848696
10.91816565
165.5905177
6.79695E−38
9.77095E−36


Coro1a
0.233952804
11.24278869
161.3819745
5.64562E−37
8.03706E−35


Zyx
0.598281587
9.607741404
160.0838661
1.08474E−36
1.52938E−34


Rad23a
−0.620382828
9.457741846
156.8432936
 5.5385E−36
7.73439E−34


Gmfg
0.341067596
10.34860251
155.1988037
1.26692E−35
1.75253E−33


Hmgb2
0.55422263
10.54001319
154.9366563
1.44556E−35
1.96262E−33


Snrpg
−0.37093984
10.05500868
154.9375473
1.44491E−35
1.96262E−33


Cd247
−0.484714034
9.801664107
154.4549065
1.84211E−35
2.47806E−33


Icos
0.610190592
9.74486266
153.8284708
2.52473E−35
3.33515E−33


Gapdh
0.301102423
10.80087158
153.8412635
2.50853E−35
3.33515E−33


Rgs10
0.478781426
9.963476703
153.4973144
2.98254E−35
3.90473E−33


Lpar6
−0.636355346
9.566478995
153.46167
3.03652E−35
3.94022E−33


Klf2
0.990778098
10.07901749
150.7316392
1.19962E−34
1.54298E−32


Ifi27
−0.461697659
9.803250594
149.8692448
1.85157E−34
2.36083E−32


H2afy
−0.325716736
10.24951783
147.3520485
6.57313E−34
8.30878E−32


Rasgrp4
−0.504364183
9.405509348
147.1171723
7.39804E−34
9.27158E−32


Limd2
0.371058117
10.22214485
146.6145931
9.52761E−34
1.18393E−31


mt-Co1
0.202675662
12.19348251
143.8546255
3.82274E−33
4.71032E−31


Btf3
0.238036805
10.77125033
143.4716622
4.63559E−33
5.66431E−31


Grcc10
−0.537895935
9.60614827
143.4452179
4.69772E−33
5.69278E−31


Lax1
0.604314275
9.491039638
142.4955928
7.57737E−33
9.10713E−31


Tpm4
0.511683249
9.75042318
142.4364652
7.80633E−33
9.30603E−31


Rpl4
0.175431416
11.61378607
142.0480365
9.49244E−33
1.12248E−30


Gm9844
−0.536348989
9.601478567
141.5180167
1.23957E−32
1.45406E−30


Gm8797
−0.579685824
9.452636417
138.8347619
4.78665E−32
5.57037E−30


Txnip
−0.547016389
9.661178104
137.4469207
9.62828E−32
1.11165E−29


Pglyrp1
0.644569275
9.565961199
135.9739899
2.02161E−31
2.31585E−29


Gm42418
−0.592774056
9.478911026
134.3456302
4.59061E−31
 5.218E−29


Ost4
−0.422518077
9.806199001
133.7229779
6.28163E−31
7.08519E−29


Atp5e
−0.277541227
10.36033547
133.4118899
7.34721E−31
8.22383E−29


Dkkl1
−0.607062031
9.511202131
132.8270224
9.86427E−31
1.09576E−28


Ifi27l2a
−0.682729091
9.830872885
132.0563095
1.45435E−30
1.60339E−28


PISD
−0.578023174
9.545282024
131.4161277
2.00781E−30
2.19705E−28


Usmg5
−0.349820825
9.9964598
130.3323663
3.46601E−30
 3.7646E−28


Gpr171
0.438173645
9.903960288
127.5732549
1.39168E−29
1.50046E−27


Rgs1
0.397257884
11.60966783
125.5147395
3.92663E−29
4.20264E−27


Fxyd5
0.228232386
10.90619274
125.1071312
4.82199E−29
5.12354E−27


Ppp3r1
−0.54142838
9.487871313
124.5160325
6.49522E−29
6.85176E−27


Rpl37
−0.161343968
11.81568565
124.1329903
7.87824E−29
8.25133E−27


Cmtm7
0.454020607
9.769874757
122.7886537
1.55123E−28
1.61317E−26


Prelid1
0.389762152
9.89081496
122.7394091
1.59021E−28
1.64206E−26


Cox5a
0.261555498
10.46343799
122.650577
1.66303E−28
1.70524E−26


Cd4
−0.379389302
9.985453892
121.4080927
3.11084E−28
3.16766E−26


H3f3b
0.195676561
11.62147274
120.5475044
4.80034E−28
 4.8543E−26


Sfpq
0.426928473
9.766528868
119.9027458
6.64394E−28
6.67261E−26


Rpl23a-ps3
−0.284048391
10.26446957
118.2728016
1.51108E−27
1.50728E−25


Ctsw
0.287951157
10.51671124
118.1709245
1.59072E−27
 1.576E−25


Il27ra
−0.536474502
9.51098448
116.3402136
4.00371E−27
3.94003E−25


Nab1
0.501005233
9.58946001
115.9990896
4.75515E−27
4.64832E−25


Rpl39
−0.176812196
11.51658061
115.8551826
5.11303E−27
4.96505E−25


Esm1
0.580091419
9.435676786
115.739511
5.42012E−27
5.22864E−25


Rpl31
0.236225624
10.69362592
113.5096718
1.66865E−26
1.59918E−24


Glipr2
0.451381886
9.775168242
113.0218075
2.13415E−26
2.02059E−24


Rps26
0.232520083
10.83772226
113.0201539
2.13593E−26
2.02059E−24


Rps5
0.148067744
11.95622251
112.7529071
2.44413E−26
2.29732E−24


S1pr1
0.588401834
9.457285155
112.1393936
3.33051E−26
3.11053E−24


Sh3bgrl3
−0.168091093
11.68103931
112.1252361
3.35438E−26
3.11299E−24


Slc25a4
0.38380581
9.862505837
111.5888161
4.39661E−26
4.05456E−24


Rps19
0.154571784
12.45475351
111.1783432
5.40801E−26
 4.9561E−24


Lgals1
0.264441023
11.89998374
111.0088631
5.89068E−26
 5.3649E−24


Psmb9
−0.328731197
9.976063465
108.9172043
1.69208E−25
1.53154E−23


Gnai2
0.222498644
10.64920018
108.8441011
1.75565E−25
1.57934E−23


Mir142hg
0.551042944
9.496107108
108.2667593
2.34932E−25
2.10049E−23


Cd3e
−0.223197162
10.83627589
107.8485188
2.90126E−25
2.57826E−23


Fus
−0.355382378
9.87695395
107.2238774
3.97617E−25
3.51221E−23


Ppm1h
−0.510426159
9.531317964
106.7556798
5.03577E−25
4.42153E−23


Rpl36
−0.169365981
11.60496907
106.6065855
5.42925E−25
4.73864E−23


Ppp1r15a
−0.547132695
9.584142239
106.4313775
5.93112E−25
5.14603E−23


Ahrr
−0.268421399
9.388438844
104.7234475
1.40429E−24
1.21124E−22


Erdr1
0.54023863
9.475463995
104.6521757
1.45573E−24
1.24826E−22


Atp5k
−0.358970242
9.829102548
103.4309785
2.69626E−24
2.29856E−22


Shisa5
0.218856868
11.19765366
103.3840867
2.76083E−24
2.34001E−22


Eif3h
0.242394534
10.41255751
102.9208658
3.48806E−24
 2.9394E−22


Mmp9
−0.359554026
9.392330763
102.2123398
4.98782E−24
4.17923E−22


Ubl3
0.463107639
9.607014043
102.0906527
5.30382E−24
4.41875E−22


Pet100
−0.433689861
9.632374387
101.939089
5.72555E−24
4.74315E−22


Capzb
0.223546007
10.5338718
101.9175981
 5.788E−24
4.76795E−22


Rpl26
0.158164308
11.42098645
101.7241051
 6.3819E−24
5.22781E−22


Reg3b
−0.500721243
9.406631246
101.3406774
7.74489E−24
6.30907E−22


Ub15
−0.252423517
10.30008476
99.79503049
1.69014E−23
 1.3692E−21


Ptpn22
0.348842201
10.01581807
98.94795597
2.59225E−23
2.08847E−21


Bst2
−0.480431543
9.573589557
98.81392257
2.77378E−23
2.22251E−21


Ptp4a2
0.336132395
9.932198353
98.33705988
3.52899E−23
2.81226E−21


Ndufa5
−0.391689506
9.697497933
97.92740041
4.34006E−23
3.43991E−21


Fam189b
−0.444063386
9.678923066
97.73586286
4.78085E−23
 3.7689E−21


Pim1
0.475298479
10.00737164
97.41181842
5.63089E−23
4.41528E−21


Hilpda
0.552369546
9.501052392
97.15607765
6.40723E−23
 4.9973E−21


Fth1
−0.182222184
11.1646769
96.91852629
7.22396E−23
5.60449E−21


Bcl2a1b
0.376789448
10.02781406
96.24135593
1.01698E−22
7.84843E−21


Psme2
−0.259919999
10.31903574
96.15844171
1.06048E−22
8.14125E−21


Rps3
0.130737293
11.81737892
95.9917874
1.15361E−22
8.76445E−21


Rps16
−0.128415044
12.15232601
95.99483852
1.15183E−22
8.76445E−21


Bin2
0.33387622
9.94413916
95.89670834
1.21036E−22
9.14824E−21


Timp2
0.500779729
9.554063201
95.71940824
1.32376E−22
9.95402E−21


Rps4x
0.141401747
11.71126116
95.58313032
 1.4181E−22
 1.0609E−20


Agr2
−0.405588336
9.399615257
95.57125335
1.42663E−22
1.06186E−20


Ly6e
−0.239270346
10.72940372
95.54576674
1.44512E−22
1.07019E−20


2010107E04Rik
−0.282366294
10.06037516
95.05323724
1.85333E−22
 1.3656E−20


Ywhah
0.314522758
10.03215277
94.92177622
1.98059E−22
1.45207E−20


S1pr4
0.461593658
9.637339017
94.89959417
2.00291E−22
1.46113E−20


Atf7ip
−0.497497145
9.522767261
94.00649346
 3.1449E−22
2.28286E−20


Hnrnpf
0.206540192
10.67023919
93.76002102
3.56194E−22
2.57284E−20


Cxcr3
0.411891354
9.824285959
93.20771164
4.70843E−22
 3.3843E−20


Rps15
−0.157626985
11.27418535
92.7653109
5.88782E−22
4.21137E−20


Rps18
0.12718884
12.37845441
92.51742519
6.67346E−22
4.75014E−20


Map2k3
0.484872054
9.558650852
91.50771196
1.11158E−21
7.87397E−20


Romo1
−0.364175595
9.742699809
90.79819383
1.59099E−21
1.12157E−19


Hic1
−0.486819612
9.58081968
90.32504307
2.02079E−21
1.41774E−19


Spink4
−0.422462121
9.400067934
90.00579616
2.37463E−21
1.65806E−19


Ang4
−0.232083493
9.386587169
89.63651639
2.86193E−21
1.98884E−19


Muc3
−0.250250477
9.387731659
88.43624664
5.24999E−21
3.63116E−19


1500009L16Rik
0.542706342
9.449829859
88.40371265
5.33705E−21
3.67405E−19


Mien1
−0.347724265
9.765232979
88.18655845
5.95633E−21
 4.0812E−19


Gramd3
0.55125369
9.499432993
88.06414473
6.33659E−21
4.32155E−19


Pkm
0.240126678
10.49678124
88.04399147
6.40148E−21
 4.3456E−19


Rpl27
−0.157552345
11.22543808
87.99513948
6.56155E−21
4.43373E−19


Dpm3
−0.360538159
9.721395651
87.74227048
7.45637E−21
5.01527E−19


Rhob
−0.532371904
9.442446398
87.18704808
9.87282E−21
6.61028E−19


Cxcr6
0.260123251
11.11844547
86.10298628
1.70805E−20
1.13841E−18


Sec61g
−0.221864807
10.42657775
86.01134149
1.78907E−20
1.18702E−18


Rps8
0.157110222
11.43109006
85.75218409
2.03959E−20
1.34714E−18


Cox7a2
−0.253012989
10.14397168
85.33018222
 2.5248E−20
1.66014E−18


Il2rb
0.4060724
9.69063229
85.14880794
2.76735E−20
 1.8115E−18


Cox14
−0.351555119
9.765850837
84.88340428
3.16488E−20
2.06252E−18


Srsf3
0.313008472
9.979900806
84.60915088
3.63579E−20
2.35892E−18


Tagln2
0.299483696
10.35627371
84.45265033
3.93527E−20
2.54198E−18


H2-Q6
−0.394471662
9.687987566
83.5063727
6.35109E−20
4.08448E−18


Arpc1b
0.173890126
10.87245212
83.26504726
7.17572E−20
4.59466E−18


Krt8
−0.403281524
9.403467815
82.98133851
8.28317E−20
 5.2807E−18


Rps15a
−0.124996535
12.34731808
82.92709526
8.51362E−20
5.40412E−18


Wbscr16
−0.410455344
9.411788422
82.02708053
1.34235E−19
8.48399E−18


Rpl7
0.154932946
11.11907579
81.95526321
1.39202E−19
8.76017E−18


Penk
1.313010388
9.664975606
81.20109876
2.03879E−19
1.27755E−17


Rps7
0.129528661
11.72687307
80.86606628
2.41546E−19
1.50714E−17


Hsd11b1
0.447395686
9.606894656
80.84119223
2.44606E−19
1.51977E−17


Naca
0.178706035
10.80182933
80.33963058
3.15282E−19
1.95062E−17


Fcgbp
−0.217260104
9.386487028
80.30030325
 3.2162E−19
1.98147E−17


Gltscr2
0.258412919
10.25123713
79.51651322
4.78212E−19
 2.9339E−17


Socs3
0.641425478
9.534871697
79.32402869
5.27147E−19
3.22065E−17


Rpl10
0.162358681
11.36672343
79.30037032
5.33497E−19
3.24592E−17


Arpc2
0.162260977
10.92620521
79.11050195
5.87313E−19
3.55858E−17


Gstp1
−0.434068798
9.504080093
79.07810684
5.97023E−19
3.60253E−17


Krt19
−0.391532021
9.402773272
78.95610969
6.35052E−19
 3.8163E−17


Itm2c
−0.366659839
9.727481117
78.79268166
6.89821E−19
4.12851E−17


Itga4
0.470754127
9.548703143
78.60469602
7.58688E−19
4.52222E−17


mt-Co2
0.156269384
11.43908237
78.49872805
8.00498E−19
 4.7521E−17


Lamtor2
−0.320200859
9.784237142
78.001988
1.02937E−18
6.08614E−17


Rplp2
−0.128947756
11.60786585
77.94171939
1.06126E−18
 6.2495E−17


Eif3e
0.229380939
10.26281367
77.57368334
1.27862E−18
7.48572E−17


Atp5c1
0.238726429
10.16724288
77.56940157
 1.2814E−18
7.48572E−17


Il7r
0.426216078
9.82476784
77.38599496
1.40609E−18
8.18153E−17


Acot9
0.433260317
9.502553768
76.63286792
2.05884E−18
1.19323E−16


Epsti1
0.290518536
10.14939008
76.08122385
2.72234E−18
1.57156E−16


Pitpna
0.304228394
9.828351065
75.94567837
2.91577E−18
1.67662E−16


Lgals4
−0.431804311
9.417498631
75.87867365
 3.0164E−18
1.72772E−16


Ccl3
1.454717185
9.969073606
75.79213983
3.15153E−18
1.79809E−16


Son
−0.321404034
9.820683121
75.4525749
 3.7429E−18
2.12721E−16


Nfkb1
0.419614213
9.561478136
75.28061286
 4.0835E−18
2.31183E−16


Tgoln1
−0.393359511
9.57609321
75.24554336
4.15668E−18
 2.3442E−16


Atp5j2
−0.213360835
10.28220098
75.01663083
4.66766E−18
2.62229E−16


Car1
−0.319128886
9.392996933
75.00343268
4.69896E−18
2.62981E−16


Hnrnpdl
−0.372863275
9.619707402
74.56253495
5.87476E−18
3.27534E−16


Pfn1
0.121037041
12.58660393
74.20797213
7.03058E−18
 3.9049E−16


Uqcrb
−0.231417337
10.14719696
73.86549321
8.36255E−18
4.62717E−16


Clca1
−0.232891953
9.388355562
73.82187536
8.54939E−18
4.71277E−16


ler5
−0.353397065
9.877196287
73.48444421
1.01432E−17
5.54964E−16


Stk17b
0.287659497
10.00946148
73.4861738
1.01344E−17
5.54964E−16


Rpia
−0.369007261
9.412241636
73.08643749
1.24094E−17
6.76429E−16


Syce1
−0.185525854
9.385331258
72.9581642
1.32427E−17
7.19179E−16


Tox
−0.427585214
9.428121663
72.61849444
1.57298E−17
8.47964E−16


H2-T23
−0.40377288
9.555965873
72.62324991
1.56919E−17
8.47964E−16


Cd44
−0.364888789
9.66492874
72.55033094
1.62826E−17
8.74548E−16


Atp1b3
0.41433275
9.580707758
72.36048167
1.79268E−17
9.59346E−16


Muc2
−0.224942562
9.387606097
72.28636024
1.86129E−17
9.92442E−16


Swt1
−0.41385543
9.494442155
71.64189782
2.58019E−17
1.37077E−15


Mpv17
−0.378283479
9.414892521
71.13939089
3.32858E−17
1.76198E−15


Xcl1
1.410763345
9.9045535
71.09150442
3.41035E−17
1.79878E−15


Gimap6
−0.242600873
10.32529467
71.01180327
3.55094E−17
1.86622E−15


mt-Atp6
0.124721425
12.48272412
70.91305335
 3.7332E−17
 1.955E−15


Slc3a2
0.341605532
9.804740905
70.51801022
4.56084E−17
2.37747E−15


Pigr
−0.280051952
9.389838816
70.51302832
4.57237E−17
2.37747E−15


Os9
−0.333807082
9.73183663
70.40523305
4.82917E−17
2.50212E−15


Gpr55
−0.377093893
9.4164776
70.06607575
5.73508E−17
2.96104E−15


Hist1h1e
0.382731133
9.412783797
69.86440121
6.35246E−17
3.26829E−15


Usp50
−0.40726079
9.47788197
69.75271034
6.72254E−17
 3.4466E−15


Ifng
0.586034647
10.08145339
68.9524593
1.00866E−16
5.15329E−15


Chmp4b
0.279912699
9.888899548
68.63971522
 1.182E−16
6.01792E−15


Marcksl1
0.566499192
9.462957421
68.27387403
1.42294E−16
7.21956E−15


Arf5
0.21433798
10.20061958
68.25797953
1.43445E−16
 7.2529E−15


Ets1
−0.265183278
10.06484846
68.00483487
1.63095E−16
8.21809E−15


Errfi1
−0.506623695
9.438930011
67.59798357
2.00472E−16
1.00669E−14


Plp2
0.413929934
9.492940408
67.57578957
2.02742E−16
1.01461E−14


Rcn1
−0.40907025
9.519216091
66.03242907
4.43565E−16
2.20474E−14


Rtp4
−0.379831897
9.409532416
66.03488329
4.43013E−16
2.20474E−14


5430421N21Rik
0.469971619
9.44775018
65.67951525
5.30545E−16
2.62817E−14


Tpi1
0.400390794
9.596173139
65.25696016
6.57416E−16
3.24569E−14


Grb2
0.295777902
9.791814485
65.08737903
7.16495E−16
3.52549E−14


Arpc5
0.205320349
10.43833468
64.93908067
7.72497E−16
3.78834E−14


Gm20069
−0.42431626
9.468444875
64.77221814
8.40762E−16
4.10937E−14


Gm27166
−0.395023504
9.408886931
64.69484784
8.74432E−16
4.25973E−14


Atp6v0e
−0.220993968
10.11729457
64.50744858
9.61681E−16
4.66925E−14


Pkp3
0.260630633
10.14960699
64.12737993
1.16629E−15
5.64402E−14


Gm8186
−0.384808147
9.50310457
64.06797442
 1.202E−15
5.77968E−14


Rbms1
0.355457007
9.624050922
64.06762225
1.20221E−15
5.77968E−14


Mns1
−0.413951384
9.50381656
64.02853318
 1.2263E−15
5.87623E−14


Toporsos
−0.40742359
9.471023228
64.01861969
1.23249E−15
5.88664E−14


Tspan31
−0.373860991
9.600422269
63.53853721
 1.5726E−15
 7.4867E−14


Tyrobp
−0.256002079
9.38856945
63.32068377
 1.7565E−15
8.33514E−14


Smim11
−0.348900564
9.59541229
62.78883943
2.30099E−15
1.08837E−13


Dusp5
0.43286125
9.605908356
62.67423675
2.43885E−15
1.14735E−13


Gnb2l1
0.185704553
10.46584315
62.67223491
2.44133E−15
1.14735E−13


Hspa8
0.143712814
11.71849799
62.55214913
2.59482E−15
1.21559E−13


3830403N18Rik
0.406986395
9.402762899
62.5092234
 2.652E−15
1.23842E−13


Cd200r4
−0.437039881
9.478380078
61.39944901
4.65941E−15
2.16892E−13


Flna
0.405123767
9.466784234
61.36779384
4.73493E−15
 2.1971E−13


Vasp
0.208908637
10.30936964
61.32523678
4.83839E−15
2.23802E−13


Sub1
0.172336396
10.71571666
61.2872353
4.93268E−15
2.27446E−13


Slc16a3
0.361619599
9.420568619
61.03912894
5.59516E−15
2.57185E−13


Phf11b
0.377804723
9.570888004
60.72994541
6.54667E−15
2.99981E−13


Ostf1
0.226133252
10.18287746
60.70239948
6.63892E−15
 3.0326E−13


Vimp
0.357852382
9.630389398
60.39765297
7.75053E−15
3.52938E−13


Lypd8
−0.390113249
9.406877274
60.34483363
7.96132E−15
3.61415E−13


Mrpl52
−0.280626279
9.865813964
60.25390377
8.33773E−15
3.77334E−13


Gbp9
−0.384088329
9.438016299
60.13147871
8.87279E−15
4.00313E−13


Gnb2
0.225652666
10.06366194
60.06352254
9.18448E−15
4.13104E−13


Prkca
−0.382483897
9.504593373
59.99856572
9.49265E−15
 4.2566E−13


Nudt21
0.308378932
9.720296786
59.88459376
1.00586E−14
4.49661E−13


1700025G04Rik
0.352987835
9.414190726
59.85240893
1.02244E−14
4.55686E−13


Cd3c
−0.153434384
10.94640525
59.77094849
1.06565E−14
4.73503E−13


Arhgdib
0.152619993
11.04633827
59.54265492
1.19672E−14
5.30136E−13


Ppp1cc
0.238784091
10.02736042
59.42918784
1.26775E−14
5.59909E−13


Eif1ax
0.353361615
9.588431037
59.17084112
 1.4456E−14
6.36542E−13


Fau
−0.098888973
12.14505857
59.09913899
1.49925E−14
6.58188E−13


Rhoc
−0.387685476
9.453376689
58.34747412
2.19679E−14
9.61536E−13


Metap2
0.320908991
9.689184268
58.25059244
2.30767E−14
1.00707E−12


Sumo3
0.363648648
9.56114032
58.19517047
2.37361E−14
1.03277E−12


Gm12840
0.529072179
9.692861276
58.17118308
2.40273E−14
1.04234E−12


Tmem258
−0.239649837
9.950028733
57.86056954
2.81371E−14
1.21373E−12


Cytip
0.291537672
9.828704032
57.86012562
2.81435E−14
1.21373E−12


Selplg
0.207253382
10.43074656
57.58231875
3.24126E−14
1.39374E−12


Napsa
0.378797818
9.426630211
57.53254537
3.32433E−14
1.42528E−12


Rps17
0.195072222
10.51281529
57.36114851
3.62702E−14
1.55052E−12


Fas
0.397724601
9.519041189
56.98223888
4.39766E−14
 1.8745E−12


Tbc1d10c
0.239368702
10.02017144
56.89287049
4.60211E−14
1.95596E−12


Rpl36-ps3
−0.368028492
9.521129953
56.68238187
5.12204E−14
2.17065E−12


Cox5b
0.205874088
10.23822956
56.60953206
5.31536E−14
2.24608E−12


Wbp1
−0.35246475
9.588426001
56.54338706
5.49719E−14
2.31625E−12


Gm8730
0.208874873
10.17481148
56.32847716
6.13208E−14
2.57635E−12


Tmbim6
−0.186680089
10.30239205
56.20299569
6.53619E−14
2.73829E−12


Rpl28
0.170032447
10.65239961
55.96849437
7.36417E−14
3.07638E−12


Ptpn1
0.303817614
9.726537881
55.73155029
8.30743E−14
3.46056E−12


Dnajb4
−0.355898832
9.426224573
55.55704902
9.07857E−14
3.77108E−12


Rap1a
0.229851445
10.02152566
55.44147997
9.62831E−14
3.98813E−12


Clec12a
0.407493649
9.44431809
55.2921659
1.03882E−13
4.29076E−12


Cirbp
−0.294228645
9.79666609
55.26784248
1.05175E−13
4.32478E−12


Zfp207
0.298332611
9.707086273
55.26559828
1.05295E−13
4.32478E−12


Nkg7
0.161386214
11.93144149
55.10052132
1.14521E−13
4.69054E−12


Ybx3
0.37881093
9.487988706
55.03788543
1.18229E−13
4.82894E−12


AY036118
−0.290741331
9.40297876
54.54808416
 1.5169E−13
6.17844E−12


1110008F13Rik
0.315450921
9.63797391
54.46226129
1.58462E−13
6.43636E−12


Akt1
0.337984736
9.572351874
54.42636768
1.61383E−13
 6.5369E−12


Klf10
−0.383277795
9.492201262
54.33969083
1.68661E−13
6.81286E−12


Gpr183
0.432865552
9.527212243
54.26631414
1.75078E−13
7.05264E−12


Rps27l
0.285042685
9.82708366
54.23787371
 1.7763E−13
7.13586E−12


Zbtb20
−0.398415973
9.422971
54.10646146
1.89916E−13
7.60856E−12


Tpgs1
0.351098997
9.528091017
53.97780948
2.02767E−13
8.10128E−12


Hpgds
−0.332016761
9.41069171
53.93805376
2.06911E−13
 8.2444E−12


Ppp3cc
−0.357588437
9.462008133
53.67190385
2.36927E−13
9.41481E−12


Skap1
−0.217904307
10.0596894
53.6434695
2.40381E−13
9.52625E−12


Sepw1
−0.202083637
10.28598242
53.38429242
2.74281E−13
1.08404E−11


Dapk2
−0.346083162
9.615406468
53.30411175
2.85708E−13
1.12617E−11


Il12rb2
−0.419238551
9.511930592
53.19792577
3.01577E−13
1.18553E−11


Cd53
0.216440054
10.33331217
52.86673853
3.56964E−13
1.39811E−11


Rps12
0.175598473
10.54841503
52.86346056
 3.5756E−13
1.39811E−11


Cers4
−0.370534066
9.475950653
52.85080455
3.59871E−13
 1.4034E−11
















TABLE 2E







LPL vs Spleen












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Vps37b
4.009558718
10.15969053
23880.81061
0
0


Plac8
1.581001007
10.261266
2298.679714
0
0


Arl4c
−1.096267234
9.613739122
2298.057615
0
0


Gch1
1.451694506
9.324851002
2284.134024
0
0


Hspe1
1.120375739
10.04122428
2264.096349
0
0


Rps27
0.45403743
13.06487318
2254.517103
0
0


Vcpkmt
1.340902143
9.338076923
2247.925659
0
0


Zfp36l2
1.282113838
9.632863878
2245.382999
0
0


Clic1
−0.600757562
10.48551744
2235.204657
0
0


S1pr4
−1.034174133
9.576670552
2210.175336
0
0


Ehd1
1.34833462
9.340919328
2195.710203
0
0


Vgll4
1.246877772
9.565538844
2194.672026
0
0


Relb
1.295849411
9.344579138
2181.915352
0
0


Rpl41
0.311798353
12.67215529
2161.526683
0
0


Chd2
1.272965567
9.362981374
2130.251594
0
0


Psmb8
−0.521650348
10.57770041
2126.610125
0
0


Emb
0.955845249
10.04817873
2119.007483
0
0


Ninj1
1.323056016
9.256191245
2095.293443
0
0


Birc3
1.298784799
9.307476648
2040.969039
0
0


Anxa1
−1.543033853
9.396439695
2030.512514
0
0


Hsp90ab1
0.695394356
10.97592722
2021.815733
0
0


Nrp1
−1.298891806
9.180343991
1989.469145
0
0


Gm26532
1.340633117
9.201977563
1986.395582
0
0


Nr3c1
1.335661273
9.320572183
1975.598067
0
0


Fos
1.939072126
9.356513533
1949.123994
0
0


Ptpn7
−1.098586112
9.378744957
1946.818351
0
0


Herpud1
1.160978832
9.421398845
1921.000688
0
0


Lpxn
0.972160773
9.577823699
1912.201507
0
0


Dusp10
1.450167924
9.339187515
1910.235573
0
0


Cebpb
1.354746762
9.345842525
1906.273395
0
0


Cfl1
−0.480630683
11.2788147
2308.202655
0
0


Snx18
1.251604623
9.230155635
1884.711722
0
0


Cnbp
0.723097233
10.09221857
2327.043345
0
0


Smim3
1.463749514
9.239342615
2362.38165
0
0


Serpinb9
1.701828092
9.633156639
2778.027215
0
0


Nmrk1
1.703580609
9.325880651
2775.614
0
0


Lmna
1.988196567
9.500793605
2775.326852
0
0


Kcnn4
−1.280719622
9.426740809
2763.826967
0
0


Cnn2
−0.796651795
10.07688931
2733.152098
0
0


Ets1
0.865935776
10.06873785
2730.781656
0
0


Ifnar1
1.394023698
9.39348068
2702.666246
0
0


Nfkb2
1.416451857
9.378018127
2696.575281
0
0


Rpl38
0.479291508
11.50231551
2689.835505
0
0


Kdm2b
1.49910175
9.314276976
2668.313076
0
0


Hist1h1c
1.899413675
9.376902339
2666.207296
0
0


Tnfrsf1b
1.486664627
9.318747024
2637.622067
0
0


Fosb
1.843370572
9.275443905
2631.524006
0
0


Pfn1
−0.471336396
12.35410724
2630.65958
0
0


Ly6c2
−2.353611076
9.526958136
2598.695467
0
0


Tnfsf11
1.874016005
9.378727031
2597.403773
0
0


Rac2
−0.470957461
11.26305817
2586.49052
0
0


Per1
1.427684134
9.218646505
2584.621529
0
0


Rrad
1.697678281
9.38211759
2577.710629
0
0


Ddit4
−1.378670763
9.499428949
2548.030456
0
0


Nrip1
1.534927003
9.422635525
2531.038897
0
0


Dennd4a
1.439765985
9.24072726
2516.239312
0
0


Map3k8
1.567239393
9.298416412
2506.429161
0
0


Maff
1.476351404
9.20355435
2486.721122
0
0


Gpr183
1.345546371
9.514196163
2445.661726
0
0


Anxa6
−0.826956439
9.887832738
2436.02059
0
0


Litaf
1.609729506
9.308467153
2431.541523
0
0


Tbc1d10c
−0.950810827
9.643337868
2373.820075
0
0


Rpl37a
0.39133888
12.46681026
2368.041434
0
0


Rbm39
0.607400682
10.52053927
2327.915783
0
0


Actr3
−0.664337821
10.4077094
2779.972955
0
0


Plcxd2
1.339741239
9.251069352
1883.281793
0
0


Tspo
−0.647613294
10.04645974
1882.222917
0
0


Cdc42
−0.463632709
10.51588855
1603.493133
0
0


Selk
0.625079555
9.913225022
1602.885033
0
0


Zfp3611
1.170501061
9.40624196
1597.645418
0
0


Nr4a3
1.016389034
9.172429909
1596.136019
0
0


Cxcl10
1.598883919
9.240851428
1591.202272
0
0


Zyx
−1.045672086
9.373220658
1590.948124
0
0


Lin54
1.190845071
9.222484632
1579.909581
0
0


Rpl37
0.321884655
11.9503646
1579.248798
0
0


mt-Cytb
−0.421897009
11.23550207
1579.172468
0
0


Hnrnpf
−0.455123386
10.52390819
1578.292187
0
0


Peli1
0.916803098
9.61652175
1577.029497
0
0


Malat1
0.546709942
14.46716245
1575.560381
0
0


Insig1
1.23314691
9.265929909
1572.809776
0
0


Ppp1r16b
1.143580107
9.365739316
1572.696243
0
0


Reep5
−0.746733789
9.737965346
1566.865393
0
0


Gpx4
0.724736901
9.927359165
1560.006316
0
0


Ifng
1.694424607
9.500982203
1559.868513
0
0


Fkbp1a
−0.649924112
9.83535715
1555.689567
0
0


Stx11
1.159910256
9.327908379
1555.317141
0
0


Socs3
1.280365319
9.361846802
1552.722296
0
0


Phlda1
1.392376646
9.315470837
1528.438748
0
0


Mfsd6
1.164224359
9.264014917
1526.311577
0
0


Gzmb
1.732500572
10.06757702
1511.117786
0
0


Hbp1
1.068823826
9.308365307
1505.133032
0
0


Traf4
1.168895052
9.255444042
1498.895049
0
0


Ddit3
1.179486367
9.269696228
1491.285564
0
0


Dtx4
1.034303937
9.178017295
1490.811143
0
0


Sik1
1.038369744
9.179583562
1489.469987
0
0


AB124611
−1.056831806
9.18576542
1487.66957
0
0


Cdc42se1
−0.903345939
9.439589721
1606.39814
0
0


Gabpb1
1.275991664
9.34485467
1882.835108
0
0


Kpna1
1.188926205
9.266532319
1609.29646
0
0


Ldlrad4
1.213360812
9.205367734
1622.44325
0
0


Sp100
−0.864441892
9.662295373
1868.043867
0
0


Gpr171
1.021072703
9.57636816
1834.625452
0
0


Atf3
1.325297273
9.196373801
1802.980884
0
0


Tnfaip8l2
−1.05719081
9.395004626
1800.880544
0
0


Spn
−0.928132208
9.500542247
1791.461043
0
0


Plscr1
1.309849059
9.383402199
1789.387598
0
0


Aebp2
1.116047127
9.343970926
1785.470204
0
0


Dnajb9
1.24033724
9.281272707
1779.954261
0
0


Arl6ip5
−0.682541103
9.890325667
1770.083233
0
0


Tob2
1.323296597
9.313589329
1750.65385
0
0


Ppp1ca
−0.517869863
10.43097858
1746.20318
0
0


Ifi27l2a
−1.251027487
10.08297152
1740.339055
0
0


Crip1
−0.764501171
11.97479307
1738.170641
0
0


Wdr1
−0.778630406
9.661982528
1729.765806
0
0


Stat3
1.077543403
9.486265548
1729.317606
0
0


Nabp1
1.103465745
9.487243674
1721.614948
0
0


Arpc3
0.554163297
10.38658938
1713.609041
0
0


Hk2
1.233253218
9.197875054
1701.077294
0
0


Prkcq
−1.046433802
9.3213095
1691.976912
0
0


Areg
1.913703104
9.255472455
1691.701767
0
0


Rgcc
1.578501766
9.406425986
1661.879727
0
0


Bcl2l11
1.250982211
9.230833464
1657.235805
0
0


Uhrf2
1.180900948
9.419077555
1649.885224
0
0


Prdx1
−0.634280751
10.07947019
1648.801939
0
0


Jun
1.867730862
9.427464308
1639.113455
0
0


Ywhaq
−0.743677921
9.740986041
1631.460167
0
0


Nfkbie
1.19011788
9.287419751
1627.853905
0
0


Fut7
−1.062699209
9.158108524
1627.249297
0
0


Rpl36
0.367174335
11.74359785
1627.246697
0
0


Txndc5
−1.090326933
9.243654724
1617.22599
0
0


Ppia
−0.511777146
11.74358668
2794.793642
0
0


Sema4a
−1.424308061
9.241797243
2470.2212
0
0


S100a6
−1.045197044
11.39764863
2830.471179
0
0


Itgb1
−2.897673381
9.764726657
7266.956354
0
0


Nr4a1
2.692070423
9.419456526
7059.962503
0
0


Btg2
1.671637356
10.22813028
7057.938285
0
0


Ifrd1
2.113629694
9.751098304
6942.518787
0
0


Slc3a2
1.818065901
9.824654011
6939.012246
0
0


Rnf157
1.564061754
9.236925083
2811.277242
0
0


Cd48
−1.552731996
10.08313072
6733.969626
0
0


Orai1
2.031182755
9.642689825
6709.374791
0
0


Ms4a6b
−1.10429405
10.51708752
6525.231353
0
0


Mxd1
2.454007515
9.403127833
6451.949777
0
0


Gpr132
1.862994857
9.638154261
6304.793777
0
0


Prdx6
1.568918578
9.939310118
6301.185371
0
0


Nfkbiz
2.356142607
9.431478134
6262.978333
0
0


Fth1
0.904024109
11.31936277
6242.555727
0
0


Bcl2a1d
2.042665993
9.693840798
6226.697766
0
0


Ddx5
0.952948791
10.94169958
6176.842997
0
0


Neurl3
2.291995793
9.422883382
6083.82123
0
0


Pde4b
2.141569839
9.459117556
6048.258702
0
0


Ramp3
2.930687962
9.642864931
5988.463883
0
0


Cd52
−0.796245466
12.13359984
5974.617413
0
0


Kdm6b
2.638646687
9.504202492
5850.261738
0
0


Coro1a
−0.838091837
11.0659365
5816.078249
0
0


Fosl2
2.335832539
9.352839289
5695.725353
0
0


Got1
2.334162607
9.599631296
5680.076036
0
0


Gramd3
1.916759134
9.918543027
5620.679858
0
0


Zc3h12a
2.176380795
9.362848531
5610.099047
0
0


Klf2
−1.767005406
10.48569203
5373.578517
0
0


Gadd45b
2.426306327
9.500826601
5239.796282
0
0


Hif1a
1.780128237
9.565953875
5140.654989
0
0


Nfkbia
2.074463071
10.45274542
7539.224662
0
0


Emp3
−1.213102789
10.15411072
5128.633776
0
0


Traf1
1.897847312
9.834035476
7663.691793
0
0


Akap13
1.663872351
10.02648752
8049.393054
0
0


Junb
2.921231675
11.34612064
21369.42787
0
0


Btg1
2.116029741
11.76687431
18450.45163
0
0


Tnfaip3
3.546622186
9.77629499
17313.81847
0
0


Ubald2
2.898183798
10.20759585
16609.50842
0
0


Rgs1
3.741819446
10.58284028
16488.72974
0
0


H3f3b
1.419705723
11.96347813
16463.45133
0
0


Bhlhe40
2.475029045
10.31956761
15891.72535
0
0


Jund
2.107406468
11.36637401
15261.14463
0
0


Ctla4
3.553585624
9.803253865
14522.85331
0
0


Pnrc1
2.15434723
10.22062858
13387.98624
0
0


Pim1
2.650738825
10.39640396
12688.13388
0
0


Odc1
3.273282194
10.05458095
12438.55364
0
0


Ms4a4b
−1.388879734
11.2982785
12023.83633
0
0


Hspa5
1.762426402
10.61032756
10372.84498
0
0


Dusp5
2.558389281
9.706009226
10293.91778
0
0


Crem
3.182372679
9.742097098
10249.83742
0
0


Tnfrsf4
2.842699768
10.21808516
9824.168095
0
0


Ifngr1
1.731994699
10.73718794
9664.17174
0
0


Eif1
0.89426742
11.59142126
9507.112454
0
0


Furin
3.228695217
9.993985472
9448.5407
0
0


Ubb
1.103098222
12.5650094
9356.998296
0
0


Dusp1
3.172241508
9.640554712
9051.339287
0
0


Bcl2a1b
2.039441995
10.06905308
8924.378246
0
0


Rgs2
3.216003123
9.735808693
8865.377702
0
0


Tgif1
2.669467418
9.488421786
8609.872205
0
0


Icos
2.257604109
9.939093266
8555.625143
0
0


Gna13
2.210200992
9.714523893
8465.331307
0
0


Il21r
2.276530222
9.883875602
8187.01809
0
0


Prr7
2.588699784
9.57070472
8146.897164
0
0


Srgn
1.128130336
11.07156455
8022.942843
0
0


Nr4a2
2.380718393
9.345009261
5127.819344
0
0


Dgat1
2.502339096
9.536306398
6766.351571
0
0


Lilr4b
2.068066286
9.554402213
5105.653595
0
0


Pglyrp1
−1.578157174
9.494896552
3736.717229
0
0


Clk1
1.412333559
9.582346831
3707.927922
0
0


Hsp90aa1
1.398095596
10.45163337
3583.071262
0
0


S100a10
−0.838341879
11.23216634
3576.86891
0
0


Srsf5
1.06692542
9.897475047
3538.850894
0
0


AI467606
−1.477840682
9.366543594
3529.615644
0
0


D16Ertd472e
1.538790532
9.456346393
3480.361308
0
0


Pycard
−1.186370114
9.771692598
3477.954478
0
0


Ptpn22
1.180249407
9.888180464
3456.544416
0
0


Il4ra
1.73212666
9.347559129
3449.594642
0
0


Hsd11b1
−1.455842293
9.399808528
3413.567354
0
0


Cirbp
1.295170619
9.642760985
3349.752172
0
0


Dnaja1
1.152714388
10.49300516
3345.386455
0
0


Myl6
−0.594146002
11.12573097
3316.559472
0
0


Fasl
1.646552093
9.427586977
3258.871927
0
0


Cd28
1.075016619
10.15896389
3221.672715
0
0


Csrnp1
1.751004019
9.322536386
3211.316895
0
0


Sqstm1
1.424220111
9.492387286
3195.177459
0
0


Klf6
1.575786258
9.681592634
3153.720756
0
0


Ptprcap
−0.830524912
10.24764013
3140.577969
0
0


Dnajb6
1.025227273
9.838018226
3095.166709
0
0


Coq10b
1.529034118
9.363466488
3063.979793
0
0


Rel
1.688619703
9.305031672
3052.495801
0
0


Itgb2
−1.323533083
9.794213175
5122.905985
0
0


Rnf125
1.43084709
9.410691476
3015.190192
0
0


Atp1b3
−1.188356367
9.541177167
2959.565466
0
0


Crbn
1.35989983
9.537037527
2862.044372
0
0


Lilrb4a
1.62136421
9.469548765
2849.108644
0
0


Tnfsf8
2.003699437
9.748893292
2841.22511
0
0


Fam110a
1.855968483
9.339616307
3742.547868
0
0


Lsp1
−0.85697683
10.56861487
3749.810676
0
0


Ccnd3
−1.115585967
9.67648159
3025.973562
0
0


Stk17b
1.121601456
9.887717235
3796.865615
0
0


Hilpda
2.295082881
9.459740509
5096.687516
0
0


P2ry10
2.00384552
9.406978436
5064.082883
0
0


Skil
2.104468774
9.381816818
5012.624057
0
0


Itgb7
−1.084543942
10.22214203
4961.314584
0
0


Ubc
1.107062199
10.77239943
4775.13384
0
0


Hspa8
0.861483141
12.05339949
4723.217104
0
0


Arf4
1.361714648
9.759651944
4573.762943
0
0


S100a4
−1.822225081
10.3993079
4512.496598
0
0


Lgals1
−1.14532414
12.13039325
4400.084682
0
0


Samsn1
1.812848974
9.577321817
4380.19289
0
0


Rora
1.625105758
9.750458338
4279.038537
0
0


Cd69
1.956584843
9.648469291
4244.509669
0
0


Itk
1.558211507
9.611291599
4240.243249
0
0


Arid5a
1.670309896
9.477417365
4224.262832
0
0


Dnajb1
2.4916257
9.971238873
4317.921832
0
0


Arhgap31
1.920161613
9.463440841
4211.687512
0
0


Tnfrsf18
1.32855039
9.848184871
3814.199865
0
0


Gm12840
2.186828689
9.862794257
3868.008163
0
0


Ctsd
−1.262237547
9.86539271
4217.656935
0
0


Sh2d2a
1.535581984
9.642030852
4029.081971
0
0


Cytip
1.135941313
9.972903526
4032.840636
0
0


Hspa1a
3.929295111
10.49028171
3753.849294
0
0


Ptp4a1
1.541286869
9.515613922
4057.508994
0
0


Cdkn1a
2.230173637
9.480758236
3950.6614
0
0


Arhgdib
−0.675912229
10.95838921
4102.421066
0
0


Tspan32
−1.853896914
9.311138568
4112.407261
0
0


Bin2
−1.121802636
9.796752534
4061.613939
0
0


Glipr2
−1.355596511
9.677643142
4113.247068
0
0


Rasgrp2
−1.490656382
9.547266701
4194.458667
0
0


Ppp1r15a
1.921918974
9.417222937
4206.958192
0
0


Rps27l
−0.790585793
9.634266967
1451.086527
0
0


Lztfl1
1.239473856
9.305427356
1450.149784
0
0


Tmem123
0.845950877
9.530098905
1448.989968
0
0


Actn2
1.250413478
9.425542778
1448.693327
0
0


Ndufa4
−0.671796207
9.843210891
1446.791341
0
0


Vim
−0.707157046
10.6775884
1442.832741
0
0


Arpc1b
−0.403868405
10.67217992
1440.52746
0
0


Phf11b
−0.946380058
9.358275331
1438.351162
0
0


Capn2
−0.91793996
9.369740513
1428.333582
0
0


Mxi1
1.087678308
9.216625774
1426.267933
0
0


Tgif2
1.040060076
9.18888498
1415.219631
0
 6.605E−308


Apobec3
−0.782739383
9.585116167
1403.461263
3.7178E−307
2.3626E−305


Tnfrsf9
1.369904528
9.278619133
1396.683257
1.1045E−305
6.9933E−304


Esyt1
−0.897252948
9.384944625
1382.905158
1.0894E−302
6.8727E−301


Flna
−0.978570065
9.307490367
1380.264205
 4.084E−302
2.5671E−300


Usmg5
0.63064033
9.923002096
1378.078435
1.2192E−301
7.6359E−300


Adora2a
1.059391205
9.316041201
1370.747214
4.7772E−300
2.9814E−298


D8Ertd738e
0.617633538
9.895276459
1370.032005
6.8326E−300
4.2489E−298


Id3
−1.333328527
9.200499915
1367.64552
2.2552E−299
1.3974E−297


Prdx4
−1.059670059
9.193532854
1363.160708
 2.127E−298
1.3133E−296


Sdf4
0.70306217
9.785099467
1362.622111
2.7849E−298
1.7134E−296


Nfil3
1.075323099
9.192168652
1362.527538
2.9198E−298
1.7901E−296


Il2rg
0.652629336
9.986962428
1360.726772
7.1891E−298
4.3921E−296


H2-Q4
0.817421022
9.616635172
1357.777577
3.1445E−297
1.9144E−295


Gimap6
0.618227968
10.30516051
1355.495711
9.8496E−297
5.9756E−295


Zeb1
1.106302599
9.265995084
1354.501578
1.6198E−296
9.7928E−295


Avl9
1.038144975
9.286737515
1345.10992
1.7796E−294
1.0722E−292


Rps27rt
0.555934358
11.01209013
1344.386415
 2.556E−294
1.5346E−292


Btg3
1.056866822
9.23085599
1337.533638
7.8836E−293
4.7172E−291


Rsrp1
−0.606429022
10.12693264
1333.093968
7.2695E−292
4.3348E−290


Gngt2
1.116293195
9.262770571
1332.833959
8.2796E−292
4.9203E−290


Gm20186
1.128143873
9.208968634
1331.733776
1.4358E−291
8.5034E−290


Lck
−0.448015594
10.43154115
1327.416216
1.2455E−290
7.3514E−289


Zcchc11
1.033365137
9.25900753
1326.729463
1.7562E−290
1.0331E−288


Dtx1
−1.112944741
9.293744389
1324.589255
5.1247E−290
3.0044E−288


Polg2
1.008383697
9.189277582
1324.203906
6.2146E−290
3.6311E−288


Pde4d
0.978758479
9.184653426
1318.71138
9.7051E−289
5.6517E−287


Il22
2.340701289
9.319200911
1307.314053
2.9092E−286
1.6885E−284


Ms4a4c
−1.131637582
9.194976637
1297.197315
 4.595E−284
2.6581E−282


Map3k14
1.068225388
9.243899938
1290.032314
1.6571E−282
9.5541E−281


Dusp4
0.943758908
9.167405616
1289.59139
2.0662E−282
1.1873E−280


Hexb
−0.955449076
9.253917287
1284.064918
3.2821E−281
1.8799E−279


Calm1
−0.398344969
10.95709394
1280.097217
 2.39E−280
1.3644E−278


S100a13
−0.556791844
9.994311271
1273.779414
5.6411E−279
3.2099E−277


Lfng
−0.911433167
9.448019615
1270.087278
3.5788E−278
2.0298E−276


Abcb1a
1.030096997
9.210772627
1262.459651
1.6269E−276
9.1972E−275


Cyba
−0.443659225
10.54811046
1258.623632
1.1092E−275
6.2501E−274


Tmsb4x
−0.267366545
14.35989227
1257.793098
1.6807E−275
9.4401E−274


Ccr5
1.14137339
9.386994832
1254.698733
 7.906E−275
4.4263E−273


Dynll1
−0.533721052
10.16004138
1245.450142
8.0885E−273
 4.514E−271


Cdc25b
−1.011124608
9.240089381
1241.171393
6.8823E−272
3.8286E−270


Itpkb
0.954598204
9.393345749
1231.44857
8.9273E−270
4.9504E−268


Ifi47
−1.019302639
9.324191671
1226.120429
1.2843E−268
7.0989E−267


Pim3
1.120079893
9.232710072
1223.737702
4.2313E−268
2.3315E−266


Mir142hg
1.002778292
9.203588598
1221.931528
1.0447E−267
5.7384E−266


Slc38a2
0.980080989
9.356984714
1217.969539
7.5865E−267
 4.154E−265


Add3
−0.936691018
9.260409169
1206.100053
2.8813E−264
1.5727E−262


H2-Q6
0.761009186
9.610491146
1203.68587
 9.644E−264
5.2475E−262


Asb2
1.117112448
9.36183005
1199.915336
6.3635E−263
3.4518E−261


Sesn3
0.935543404
9.346703299
1196.855271
2.9426E−262
1.5912E−260


Fus
0.646782373
9.766633699
1195.296437
6.4197E−262
3.4607E−260


Myo1f
−0.873721079
9.342854295
1195.091822
7.1119E−262
 3.822E−260


Hsph1
1.166689856
9.349269322
1192.706446
2.3464E−261
1.2571E−259


Ptpn6
−0.882603255
9.388975554
1187.971213
 2.509E−260
1.3401E−258


Def6
−0.806896845
9.38910456
1185.235824
9.8624E−260
5.2515E−258


Sub1
0.452332616
11.00148656
1179.659467
1.6066E−258
8.5285E−257


Abcb1b
1.031343273
9.207220814
1177.281825
 5.28E−258
2.7944E−256


4930523C07Rik
0.720136823
9.698992642
1167.683789
6.4357E−256
3.3957E−254


Traf3ip3
−0.853000826
9.34798616
1163.769696
4.5631E−255
2.4004E−253


Ube2b
0.610256432
9.791411125
1160.573155
2.2593E−254
1.1849E−252


Sytl3
0.90845429
9.39100109
1157.949128
8.3997E−254
 4.392E−252


Smad7
0.993817761
9.276173853
1155.62533
2.6872E−253
1.4009E−251


Casp4
0.970497764
9.304035945
1150.905397
2.8518E−252
1.4822E−250


Cxcr3
−0.782625551
9.636541469
1140.943197
4.1712E−250
2.1616E−248


Zc3hav1
0.783012423
9.545786673
1139.080842
1.0593E−249
5.4732E−248


Prkar1a
0.51534633
9.989784924
1129.99109
1.0013E−247
5.1583E−246


Stat4
0.87162553
9.393938041
1124.641897
 1.456E−246
7.4785E−245


Pabpc1
0.354811986
10.74945661
1118.678903
2.8785E−245
1.4741E−243


Tpst2
−0.683138851
9.562387953
1118.595548
3.0011E−245
1.5324E−243


Camk2n1
1.044877893
9.246195314
1099.512516
4.2154E−241
2.1461E−239


Rcsd1
−0.841278225
9.314558222
1097.472831
1.1699E−240
5.9389E−239


Irf4
0.93980886
9.17631645
1097.239553
1.3148E−240
6.6549E−239


Fam65b
−0.901719998
9.278382726
1091.496759
2.3282E−239
 1.175E−237


Lbr
−0.742593678
9.489271039
1091.478886
2.3491E−239
1.1822E−237


Apbb1ip
−0.734076752
9.476988831
1091.350028
2.5056E−239
1.2573E−237


Ctla2a
0.918347724
10.12270773
1087.781562
1.4945E−238
7.4778E−237


Ndfip1
0.723456574
9.542168744
1087.435345
1.7773E−238
 8.867E−237


Ubl5
0.460259851
10.14988664
1085.990773
3.6621E−238
1.8218E−236


Fam46a
1.216427371
9.373607718
1084.141952
9.2377E−238
4.5825E−236


Kcnab2
−0.822790253
9.316762961
1080.193997
6.6626E−237
3.2957E−235


Ahr
1.055054007
9.234738845
1079.788424
8.1619E−237
4.0259E−235


Hbb-bs
−0.875475832
9.153071488
1078.386874
 1.646E−236
8.0958E−235


Osgin1
0.942209138
9.166127069
1076.502703
4.2261E−236
2.0728E−234


Il12rb2
1.030381194
9.249916639
1075.546924
6.8183E−236
3.3348E−234


Fau
0.234758491
12.21265562
1071.940035
 4.146E−235
2.0221E−233


Mier1
0.825393149
9.428014107
1070.148889
1.0161E−234
 4.942E−233


mt-Co3
−0.275253772
12.22313569
1069.075336
1.7389E−234
8.4338E−233


Rasa3
−0.903689186
9.255738017
1058.61195
3.2696E−232
1.5814E−230


E2f2
−0.8392467
9.159524644
1053.99296
3.2995E−231
1.5914E−229


Ptp4a2
0.574398647
9.844619398
1050.023682
2.4054E−230
 1.157E−228


Rpl27
0.281823678
11.36103815
1048.388203
5.4533E−230
2.6158E−228


Pomp
−0.550362574
9.774637428
1047.45567
8.6966E−230
 4.16E−228


Ube2j1
0.830125377
9.345358827
1046.789853
1.2136E−229
5.7893E−228


Dbi
−0.752178664
9.531198139
1041.960926
1.3604E−228
6.4718E−227


Rbpj
0.922052977
9.288273063
1040.747485
2.4969E−228
1.1846E−226


Racgap1
−1.030040933
9.267128908
1032.284027
1.7258E−226
8.1657E−225


Rinl
−0.701653781
9.499382409
1031.73747
2.2688E−226
1.0706E−224


Map1lc3a
0.930943669
9.222575159
1025.770847
4.4945E−225
2.1151E−223


Stk38
−0.839920214
9.310126564
1016.59735
4.4323E−223
2.0802E−221


Rom1
−0.922814364
9.186853274
1016.525731
4.5941E−223
2.1503E−221


Ier5l
0.849227509
9.153032957
1016.270631
5.2197E−223
2.4366E−221


Atic
−0.890335932
9.211770003
1015.191565
8.9576E−223
4.1703E−221


Bcl2l1
0.976985439
9.276721393
1013.469591
2.1207E−222
9.8469E−221


Abracl
−0.493515818
10.02337263
1012.64476
3.2046E−222
 1.484E−220
















TABLE 2F







IEL vs Spleen












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Rgs1
4.262079706
10.67767028
16605.4657
0
0


Cd160
1.993212278
9.512810414
2102.741037
0
0


Actn2
1.659090902
9.531861239
2089.000144
0
0


Pglyrp1
−1.501489373
9.640341062
2053.499203
0
0


Gngt2
1.675642097
9.359655682
1985.016955
0
0


Ifng
2.245135482
9.611310602
1971.078308
0
0


Atp1b3
−1.310004856
9.650252258
1944.791465
0
0


Osgin1
1.626820627
9.262214394
1937.431479
0
0


Ubc
0.849179414
10.53817088
1905.724403
0
0


Ckb
1.739428091
9.348935381
1902.202899
0
0


Ly6c2
−2.504398179
9.67510089
2151.306825
0
0


Rps19
−0.525105269
12.68187153
1875.342571
0
0


mt-Cytb
−0.557479877
11.32634498
1739.463783
0
0


Litaf
1.571091076
9.323626777
1730.972116
0
0


Lgals1
−0.864462482
12.37139459
1689.543998
0
0


Dapk2
1.539044461
9.314819002
1679.288972
0
0


Ms4a4b
−0.585021214
11.67414781
1629.224356
0
0


Emp3
−0.828192522
10.36526113
1589.900258
0
0


Rplp0
−0.402486196
12.41844544
1541.987891
0
0


Ddx5
0.577762999
10.6942535
1491.549434
0
0


Gpr34
1.45129199
9.307758489
1483.078432
0
0


Rps8
−0.501436752
11.65645422
1855.710838
0
0


Tspan32
−1.857483249
9.43206433
2309.54436
0
0


Ubb
0.587733421
12.12717783
2159.371295
0
0


Btg2
1.389291695
10.01747436
2562.865196
0
0


Junb
2.384505986
10.73966867
7545.660651
0
0


Dusp1
3.030607317
9.53465407
4234.923152
0
0


Itgb1
−2.870641087
9.973925881
4205.16325
0
0


Cd69
2.283758528
9.690665292
4092.761065
0
0


Abi3
2.236724652
9.438058313
4047.605221
0
0


Jund
1.265368178
10.81995682
3897.741946
0
0


Fos
3.359701466
9.582648832
3867.81214
0
0


Klf2
−1.774396751
10.69289158
3810.169639
0
0


Jun
2.95696533
9.570921865
3765.507669
0
0


Ms4a6b
−0.806571053
10.73301473
2352.116967
0
0


Btg1
1.17808929
11.04741079
3248.989903
0
0


Cxcr6
1.462933277
10.57309895
3323.908054
0
0


Hspa1a
3.860361274
9.996281107
3132.38968
0
0


Ctsw
1.202949028
10.10085922
2877.890061
0
0


Rasgrp2
−1.634496669
9.675037233
2872.189184
0
0


Klf6
1.892054861
9.70857084
2829.292235
0
0


Asb2
2.111944299
9.548775661
2817.279328
0
0


Amica1
1.953284071
9.478445084
2779.961972
0
0


Furin
2.413436865
9.609122409
2776.783836
0
0


Itm2b
0.705576535
11.21870081
2774.794338
0
0


Cd3g
0.678489262
11.28334695
2737.378773
0
0


Itgae
2.265437232
9.373851416
3164.762104
0
0


Crip1
−0.770514594
12.07555511
1477.500162
0
0


mt-Atp6
−0.388845529
12.61166871
1444.234208
0
0


S100a4
−1.18365345
10.66366393
1435.922499
0
0


Rpl8
−0.45414365
11.59716841
1428.757788
0
0


mt-Co3
−0.393548607
12.29236826
1428.055822
0
0


Skil
1.402316776
9.30797085
1426.937262
0
0


Ifi2712a
−1.450531959
10.18524586
1396.949077
9.6694E−306
3.1179E−303


Gadd45b
1.580780927
9.341379728
1381.831612
1.8641E−302
5.9015E−300


Ccl4
3.686687264
10.50318841
1373.907492
9.8271E−301
3.0555E−298


AW112010
0.590006061
11.88680588
1344.968361
1.9103E−294
5.8353E−292


Hic1
1.42721533
9.293785776
1341.859244
9.0517E−294
2.7174E−291


Ly6g5b
1.413897369
9.280717651
1325.037738
4.0946E−290
1.2084E−287


Bcl2a1d
1.240479361
9.479817541
1319.618632
6.1637E−289
1.7887E−286


Dusp2
1.29812206
9.739066913
1311.780358
3.1131E−287
8.8861E−285


S1pr4
−1.041809426
9.681229931
1297.038961
4.9739E−284
1.3969E−281


Sgk1
−1.39232095
9.335085016
1280.164904
2.3104E−280
6.3856E−278


Mapkapk3
1.160234155
9.443868055
1274.296635
4.3548E−279
1.1848E−276


Rps3a1
−0.385150761
11.68169968
1260.878972
3.5881E−276
9.6118E−274


Glipr2
−0.940668004
9.853250247
1246.002646
6.1347E−273
1.6185E−270


Rps20
−0.56020392
10.99041833
1243.157128
2.5479E−272
6.6216E−270


Rps17
−0.563047054
10.69497822
1233.249546
3.6252E−270
9.2825E−268


Malat1
0.588800482
14.37997813
1223.18936
5.5673E−268
1.4049E−265


Tnfaip3
1.426715741
9.302203564
1222.117432
9.5192E−268
2.3678E−265


Slamf6
−1.452746909
9.424776552
1207.916821
1.1608E−264
2.8467E−262


Lag3
1.863437794
9.404044177
1184.663271
1.3135E−259
3.1764E−257


Rps6
−0.367229946
12.18088129
1181.87815
5.2931E−259
1.2625E−256


Bcl2a1b
1.013192394
9.692981785
1171.176339
1.1209E−256
2.6373E−254


S100a10
−0.611743271
11.3818739
1171.100606
1.1641E−256
2.7027E−254


Ehd1
1.245626999
9.349651414
1170.157928
1.8659E−256
4.2748E−254


H2afz
−0.815169676
10.88644706
1166.361727
1.2472E−255
2.8202E−253


Apol9b
1.139074323
9.225731368
1166.140287
1.3933E−255
3.1103E−253


Cd38
1.278780699
9.321520345
1155.58763
2.7384E−253
6.0356E−251


Rpl29
−0.451553781
11.21299617
1154.787878
4.0861E−253
8.8935E−251


Rbpj
1.213743294
9.354366621
1142.009944
2.4458E−250
5.2575E−248


Gpr171
0.992352465
9.586322101
1112.18461
7.4241E−244
1.5764E−241


Dnajb1
1.309635611
9.56298969
1106.132968
1.5343E−242
3.2188E−240


Plac8
1.290227127
10.01229068
1102.413441
9.8705E−242
 2.046E−239


Aldoa
0.640398084
10.2226702
1095.154589
3.7326E−240
7.6461E−238


Rps5
−0.368948183
12.10797403
1089.924265
5.1144E−239
1.0355E−236


Anxa1
−1.436448141
9.514591367
1086.543383
2.7773E−238
5.5584E−236


Rgs2
1.44060445
9.304465505
1075.968262
 5.522E−236
1.0926E−233


Rgs10
1.055568254
9.634558763
1068.444474
2.3845E−234
 4.665E−232


Rplp1
−0.407337669
11.58510276
1067.917965
3.1033E−234
6.0039E−232


Rpl21
−0.372542865
11.67596432
1061.07808
9.5166E−233
1.8209E−230


Camk2n1
1.271116935
9.309540856
1052.321018
7.6181E−231
1.4418E−228


Arhgdib
−0.41229592
11.15444337
1045.725621
2.0672E−229
3.8703E−227


Neat1
1.195998299
9.446396783
1025.145275
6.1469E−225
1.1386E−222


Rpl32
−0.325305646
12.45425636
1010.039595
1.1804E−221
2.1635E−219


Mxd1
1.25624995
9.266182111
1003.274001
3.4883E−220
 6.327E−218


mt-Nd4
−0.510585429
10.65212475
996.4531242
1.0598E−218
1.9024E−216


Ctla4
1.2913399
9.290657695
984.1703115
4.9556E−216
8.8048E−214


Rps4x
−0.339096552
11.85896399
976.6294311
 2.159E−214
3.7972E−212


Hbb-bs
−1.006330094
9.230738885
976.6079899
2.1823E−214
3.7997E−212


Cd3e
0.493125143
10.54127341
975.2453323
4.3162E−214
 7.441E−212


Srgn
0.536001419
10.69028649
969.6923156
6.9529E−213
1.1869E−210


Rps7
−0.361780836
11.89493797
958.9162718
1.5296E−210
2.5858E−208


Smim3
1.114768141
9.249649885
955.3599849
9.0702E−210
1.5186E−207


Fasl
1.135893724
9.368313371
945.8583186
1.0545E−207
1.7487E−205


Nr4a1
1.432783006
9.262165007
943.1908477
4.0077E−207
6.5831E−205


Lpxn
0.860705006
9.573491654
939.7712079
2.2194E−206
3.6117E−204


Nrp1
−1.151078008
9.269548869
922.0870285
1.5504E−202
2.4995E−200


Hcst
0.587237628
10.53140426
918.4462426
9.5912E−202
1.5321E−199


Cd9
−1.245593031
9.317378372
913.1639268
1.3495E−200
2.1361E−198


Susd3
0.938349002
9.478294991
907.2901186
 2.553E−199
4.0047E−197


Rpl38
0.391339203
11.2758405
896.3541086
6.0869E−197
9.4629E−195


Itgb7
−0.559510469
10.45112407
894.290745
1.7098E−196
2.6346E−194


Bin2
−0.632699558
9.986168083
887.0930266
6.2757E−195
9.5853E−193


Rps11
−0.292018742
12.31112894
886.2098796
9.7646E−195
1.4784E−192


Neurl3
1.119559655
9.280786296
858.9627424
8.1858E−189
1.2287E−186


Hmgb2
−0.947980515
10.87140735
857.9515297
 1.358E−188
 2.021E−186


Tnfrsf25
−1.141346675
9.325984856
852.1182469
 2.518E−187
3.7155E−185


Il21r
0.94141111
9.484637076
838.9198588
1.8639E−184
2.7273E−182


H3f3b
0.374221947
11.35853232
838.6673109
2.1151E−184
 3.069E−182


Ccr7
−1.230256877
9.274847488
834.9590376
1.3537E−183
1.9481E−181


Sh2d1a
−0.93528822
9.633910801
834.4242155
1.7693E−183
2.5252E−181


Fam65b
−1.061529155
9.353791259
831.196016
8.9052E−183
1.2606E−180


Rpsa
−0.326786093
11.58222174
826.7117255
8.4056E−182
1.1803E−179


S1pr1
−1.045505474
9.378176807
823.4981118
4.1999E−181
5.8503E−179


Ldlrad4
1.006112174
9.235552707
809.9266305
3.7484E−178
 5.18E−176


Prdx4
−1.066608254
9.276690245
808.031196
9.6816E−178
1.3274E−175


AB124611
−1.023170957
9.268582849
807.8449459
1.0628E−177
1.4457E−175


Klf3
−1.186891126
9.31685725
805.2114908
3.9719E−177
5.3611E−175


Nedd9
0.99989357
9.334070971
800.3269765
4.5811E−176
6.1359E−174


Ppp1r15a
1.114264497
9.318633918
796.3865749
3.2937E−175
4.3779E−173


Ahr
1.105381504
9.279326539
796.2018926
3.6128E−175
4.7656E−173


Rps2
−0.38282646
11.545051
795.678974
4.6939E−175
6.1451E−173


Rpl35a
−0.310787517
11.63257095
791.8001781
3.2724E−174
4.2521E−172


Gzmb
1.515904822
9.944249279
782.411994
 3.598E−172
4.6406E−170


Cish
0.979424054
9.414754089
780.9865643
7.3449E−172
9.4036E−170


Akap13
0.752120035
9.708953687
778.3867251
2.6993E−171
3.4307E−169


Gzma
1.951748481
11.34314196
773.458912
3.1819E−170
4.0148E−168


Gadd45g
1.350903661
9.293836915
771.2493214
9.6188E−170
1.2049E−167


Ccr5
1.055098668
9.400279713
767.3790788
6.6776E−169
 8.305E−167


Ccl5
1.208924468
13.67587951
757.739843
8.3271E−167
1.0283E−164


Limd2
−0.586230549
10.26889424
757.5864436
8.9918E−167
1.1026E−164


Plekhf1
1.019330549
9.263192932
728.2887944
 2.11E−160
2.5692E−158


Rpl28
−0.391130178
10.77653256
726.4014939
5.4284E−160
6.5639E−158


Nkg7
0.578359003
11.62073593
723.3444287
2.5085E−159
3.0123E−157


Sema4a
−1.025446315
9.351055105
722.8049034
3.2865E−159
3.9195E−157


Rps12
−0.454488734
10.7143326
716.5056658
7.7001E−158
9.1207E−156


Mir142hg
0.981584406
9.249452604
714.3596403
 2.255E−157
 2.653E−155


Nr4a2
1.310458939
9.245298726
710.3616104
1.6693E−156
1.9507E−154


Plk3
1.067784554
9.346984393
699.4513487
3.9356E−154
4.5685E−152


Rps27a
−0.296136488
11.76900547
698.3920575
 6.689E−154
7.7132E−152


Bhlhe40
0.858136819
9.662074795
696.7934058
1.4894E−153
1.7061E−151


Ms4a4c
−1.088441443
9.282107963
693.3564808
8.3251E−153
9.4743E−151


mt-Nd1
−0.380326867
11.2629884
690.4436462
3.5795E−152
4.0471E−150


Med10
0.73641002
9.523002102
687.5656361
1.5124E−151
 1.699E−149


Rpl10a
−0.355092665
11.17378178
687.3757938
1.6632E−151
1.8564E−149


S100a6
−0.583209178
11.66425634
676.2798097
4.3047E−149
4.7741E−147


Flna
−0.915188626
9.394672482
676.1026688
 4.704E−149
5.1839E−147


Slc3a2
0.786942874
9.537633493
675.8712633
5.2819E−149
5.7841E−147


Fth1
0.349796278
10.96871293
669.4836567
1.2939E−147
1.4081E−145


Pim1
0.899833541
9.699776734
669.2064071
1.4866E−147
1.6077E−145


Ermn
1.063075406
9.259478586
668.7191115
1.8974E−147
2.0394E−145


Rps18
−0.298129514
12.48866118
668.1114963
2.5722E−147
2.7476E−145


Pnrc1
0.704253854
9.692827582
667.913303
2.8405E−147
3.0158E−145


Hist1h1c
1.172958994
9.29446422
656.8278894
7.3146E−145
7.7189E−143


Pdlim1
−0.922335931
9.370260078
656.2072833
9.9807E−145
1.0469E−142


Rnf149
0.917040109
9.334081045
653.6098152
3.6648E−144
3.8211E−142


Tff1
1.026000433
9.22546748
648.9038566
3.8681E−143
 4.009E−141


Hsd11b1
−0.77670808
9.561647283
629.6623451
5.9191E−139
6.0985E−137


Cd47
−0.476883342
10.29751655
617.2298436
 2.994E−136
3.0666E−134


Rpl31
−0.363933126
10.81463059
616.0827323
5.3181E−136
5.4151E−134


Gpr18
0.981990926
9.352283484
615.5237916
7.0359E−136
7.1227E−134


Pycard
−0.59566406
9.979121804
610.9981535
6.7865E−135
6.8305E−133


Runx3
0.728527491
9.562720515
609.0561824
1.7949E−134
1.7961E−132


Ubac2
0.756993118
9.471979592
604.7793569
1.5285E−133
1.5208E−131


Gimap7
0.557513099
10.02409941
604.3949278
 1.853E−133
1.8332E−131


Cd27
−1.036859444
9.404666177
603.3770562
3.0851E−133
3.0349E−131


Fut7
−0.813298011
9.241991725
601.2763096
8.8347E−133
8.6421E−131


Cd7
1.054957536
9.801914175
598.3586942
3.8089E−132
 3.705E−130


Hspa8
0.305700865
11.60840881
597.894494
4.8058E−132
4.6488E−130


Coro1a
−0.302618405
11.3347192
596.775756
8.4159E−132
 8.096E−130


Cdc25b
−0.926265339
9.328139226
594.1243079
3.1756E−131
3.0381E−129


Gramd3
−0.898686441
9.420567345
593.3827375
4.6038E−131
4.3804E−129


Ccl3
2.761276819
9.496917967
588.348771
 5.729E−130
5.4213E−128


Nsg2
−0.821700106
9.230550514
581.3504475
1.9069E−128
1.7948E−126


Prdx6
0.617318162
9.661183975
580.9418509
 2.34E−128
2.1905E−126


Dok2
−0.748098844
9.542583178
575.0766093
 4.416E−127
4.1118E−125


Apol9a
0.687625082
9.203228477
574.0747894
7.2937E−127
6.7552E−125


Mptx1
0.725791051
9.203528419
573.8140249
8.3113E−127
7.6569E−125


Ptpn22
0.614248744
9.745489627
570.9953324
3.4104E−126
3.1254E−124


Gm26532
0.863998792
9.218766316
567.0071602
2.5139E−125
2.2917E−123


Adgrg1
0.666167406
9.202504636
561.9069435
3.2344E−124
2.9332E−122


Prdx5
0.626969797
9.618053492
558.211872
2.0587E−123
1.8573E−121


Rps3
−0.233251504
11.90667401
557.2016632
3.4147E−123
3.0648E−121


Ypel3
0.698378192
9.67572785
555.8482393
6.7262E−123
 6.006E−121


Pmepa1
0.722569784
9.209646525
555.5816234
7.6873E−123
6.8291E−121


P2rx7
0.872094397
9.290334827
553.6533556
2.0195E−122
1.7849E−120


Rftn1
0.780530727
9.38529654
553.5817803
2.0932E−122
1.8408E−120


Rps15
−0.281171407
11.39272392
550.2446875
1.1137E−121
9.7444E−120


Ier2
0.664096741
9.809742381
549.9735323
1.2757E−121
1.1106E−119


Cotl1
0.432498996
10.57561017
548.7207422
2.3894E−121
2.0698E−119


Rpl14
−0.278682856
11.83763413
544.6000766
1.8824E−120
1.6226E−118


Id2
0.489582245
10.94720261
538.5213781
3.9546E−119
 3.392E−117


Nabp1
0.775579548
9.441457345
538.4457335
4.1073E−119
3.5057E−117


Serpina3g
0.932154861
9.583786505
537.5406431
6.4634E−119
5.4675E−117


Ywhaq
−0.525927234
9.879377712
537.5390489
6.4686E−119
5.4675E−117


mt-Nd2
−0.534446067
9.939205918
537.222614
7.5797E−119
6.3757E−117


Cpd
0.725500446
9.212757368
536.6810278
 9.942E−119
8.3226E−117


Samhd1
−0.727184214
9.58455645
535.8115532
1.5368E−118
1.2804E−116


Prkcg
−0.768998828
9.429526956
533.8722419
 4.06E−118
3.3663E−116


Slc9a3r1
0.50081584
9.871867879
531.9985034
1.0379E−117
8.5651E−116


Prdx1
−0.436919808
10.23820402
515.5474221
3.9379E−114
3.2343E−112


Cd2
−0.451491441
10.25558839
514.4176199
6.9355E−114
5.6695E−112


Ly6c1
−0.845983228
9.223958343
514.1576066
7.9003E−114
6.4281E−112


Rom1
−0.874065681
9.273403894
511.8000784
2.5738E−113
2.0844E−111


Aim2
0.8277845
9.261912654
504.4701056
1.0125E−111
8.1526E−110


Sec61g
0.400877072
10.22586732
504.4630547
 1.016E−111
8.1526E−110


Gstm5
0.902058784
9.230637004
503.3328649
1.7898E−111
1.4296E−109


mt-Co2
−0.264507091
11.49074591
502.8822201
2.2432E−111
1.7835E−109


Tspo
−0.42076822
10.19442167
501.8646488
3.7348E−111
2.9559E−109


Map3k8
0.886100204
9.270683592
501.6110699
4.2407E−111
3.3411E−109


St6galnac3
0.883785968
9.281772021
499.8464583
1.0265E−110
8.0514E−109


Ucp2
0.468618682
10.01352738
497.1644322
3.9349E−110
3.0724E−108


Lsp1
−0.374419062
10.79768635
495.9820381
7.1155E−110
 5.531E−108


Hba-a1
−0.61069366
9.205576591
495.0296708
1.1466E−109
8.8734E−108


Fgl2
0.806015418
9.503341859
493.6372642
2.3035E−109
1.7747E−107


Efhd2
0.593457057
9.629719472
493.1402658
2.9548E−109
2.2665E−107


Stk17b
0.544966261
9.749708021
491.2101692
7.7713E−109
5.9348E−107


Cd4
0.566897576
9.757520572
491.0179769
8.5568E−109
6.5062E−107


1600014C10Rik
0.804522875
9.336807011
490.7645054
9.7155E−109
 7.355E−107


Cmah
−0.647892227
9.221071111
490.4164898
1.1566E−108
8.7182E−107


Wbp1
0.78371793
9.336308361
483.5355138
3.6344E−107
2.7277E−105


Smad7
0.824276691
9.295734689
482.9761258
 4.81E−107
3.5945E−105


5430421N21Rik
0.787547001
9.216296912
482.101492
7.4553E−107
5.5475E−105


Igfbp4
−0.890958237
9.223424268
479.0282947
3.4768E−106
2.5761E−104


Rhob
0.762632846
9.215115957
477.1124388
9.0798E−106
 6.699E−104


Rpl4
−0.233195869
11.68632408
476.3582095
1.3249E−105
9.7341E−104


Ccl1
3.115968281
9.596379606
475.9162433
1.6534E−105
1.2096E−103


Gramd1a
0.681833843
9.490134539
474.69533
3.0482E−105
2.2207E−103


Prkar1a
0.427630344
9.98187113
474.2673884
3.7771E−105
2.7403E−103


Lilrb4a
0.909524168
9.363990735
472.8669947
7.6189E−105
5.5046E−103


Kcnn4
−0.660071444
9.574572775
471.6792428
1.3815E−104
 9.94E−103


Rps26
−0.315405888
10.92694571
470.3775483
2.6522E−104
1.9004E−102


Isg20
0.825783773
9.282559299
468.9706448
5.3674E−104
3.8302E−102


Tnfsf11
0.884737646
9.274816839
466.9953633
1.4441E−103
1.0263E−101


Cd82
0.481854251
10.17845419
466.5620801
1.7943E−103
 1.27E−101


Tpm4
−0.612729082
9.709350388
466.1516286
 2.204E−103
1.5537E−101


2810474O19Rik
−0.765852699
9.427307461
464.4024391
5.2949E−103
3.7175E−101


Gcnt2
0.670930148
9.208179265
463.4609738
8.4865E−103
5.9344E−101


Dusp5
0.823340659
9.351651501
459.0693513
7.6633E−102
5.3373E−100


Dok1
0.747411005
9.32999967
458.9167176
8.2724E−102
5.7386E−100


Tmem256
0.61810974
9.531009831
458.096344
1.2478E−101
 8.622E−100


Adgrg5
0.685604528
9.212262974
457.8845661
1.3875E−101
9.5494E−100


Pfdn5
0.361119936
10.44951346
454.7727164
6.5986E−101
4.5234E−99 


Traf1
0.665520256
9.518543672
454.3640596
8.0981E−101
5.5296E−99 


Rps10
−0.264905947
11.16449461
454.1113701
9.1913E−101
6.2515E−99 


Itga1
0.74909445
9.228969457
453.097764
1.5274E−100
1.03485E−98 


Lilr4b
0.858881674
9.344215918
451.2048016
3.9438E−100
2.66163E−98 


Rasa3
−0.781161253
9.347767194
450.5315409
5.5263E−100
3.71524E−98 


Izumo1r
−1.216792535
9.314620339
448.5664961
1.4794E−99 
9.90745E−98 


Rpl12
−0.365836896
10.8499333
448.4935947
1.5344E−99 
1.02367E−97 


Tnfaip8l2
−0.656173911
9.525752027
444.3087909
1.24939E−98 
8.30319E−97 


Txndc5
−0.757766414
9.346388362
443.7890437
1.62111E−98 
1.07326E−96 


Lef1
−0.800271093
9.363794019
442.1237796
3.7345E−98 
2.46307E−96 


Prrt1
0.602550339
9.204288164
440.8898295
6.93083E−98 
4.55395E−96 


St6galnac2
0.639011431
9.20894446
436.5796195
6.00979E−97 
3.93393E−95 


Tcf7
−0.852294436
9.454127633
429.8926644
1.71494E−95 
1.11837E−93 


Frmd4b
0.73174728
9.22917364
425.8933346
1.27266E−94 
8.26851E−93 


Bcl2
−0.888178196
9.591081981
423.7626419
3.7023E−94 
2.39645E−92 


Rpl10
−0.249865961
11.48093566
423.7211872
3.78002E−94 
2.43769E−92 


Penk
1.86460897
9.328467588
423.0442881
5.30673E−94 
3.40962E−92 


Rps24
−0.243016167
11.88186655
420.8311132
1.60896E−93 
1.02997E−91 


Dgka
−0.685020808
9.458704546
420.0237087
2.41149E−93 
1.53805E−91 


Cox17
0.477747199
9.819102932
418.0059291
6.62952E−93 
4.21289E−91 


Nt5e
0.784054933
9.259960638
417.8805506
7.05947E−93 
4.4698E−91 


Plcxd2
0.772699883
9.245478992
414.2485755
4.35845E−92 
2.74961E−90 


Reep5
−0.488697469
9.868713475
412.7987005
9.01418E−92 
5.66624E−90 


Cd244
0.705384043
9.214900481
411.9645549
1.36929E−91 
8.57629E−90 


Ifitm3
−1.027216242
9.940629422
411.873886
1.43295E−91 
8.94286E−90 


Arid5a
0.713220342
9.354599172
411.1681094
2.04108E−91 
1.26926E−89 


Myl6
−0.261289897
11.30790412
409.3658743
5.03686E−91 
3.12106E−89 


Ppp2r2c
0.519156642
9.197405353
408.2335859
8.88447E−91 
5.48569E−89 


Ly6e
−0.333786835
10.78770429
406.6496223
1.96528E−90 
1.20917E−88 


Sike1
−0.692535807
9.394852686
405.2866661
3.89146E−90 
2.38585E−88 


Ndufa4
−0.441522604
9.985023527
404.1704464
6.80914E−90 
4.16003E−88 


1500009L16Rik
−0.898102208
9.364736674
404.1467767
6.89041E−90 
4.19496E−88 


Nt5c
−0.559849517
9.571043992
402.8215085
1.33885E−89 
8.12269E−88 


Icam2
−0.738300082
9.298358105
401.7927545
2.24221E−89 
1.3556E−87 


Id3
−0.987410593
9.302895586
399.6777741
6.47261E−89 
3.89969E−87 


Znrf1
0.698891421
9.390734877
399.2341991
8.08426E−89 
4.8539E−87 


Kcnab2
−0.660175762
9.41152398
398.2712409
1.30998E−88 
7.83829E−87 


Satb1
−0.760996699
9.4527421
396.169245
3.75709E−88 
2.24036E−86 


Ccdc107
0.654848921
9.378243207
393.4693721
1.45412E−87 
8.64132E−86 


Add3
−0.706199058
9.360336043
393.3945083
1.50972E−87 
8.94125E−86 


Ppia
−0.251687631
11.88768862
392.2838879
2.63436E−87 
1.5549E−85 


Tnf
0.969127686
9.271925014
391.1558162
4.6372E−87 
2.7278E−85 


Fkbp1a
−0.411230721
9.974773786
389.5576999
1.03316E−86 
6.05702E−85 


Ppp1r16b
0.748777981
9.348007448
389.2877898
1.18284E−86 
6.91129E−85 


Acot7
0.540236341
9.607603124
387.5039543
2.8925E−86 
1.68442E−84 


Rps25
−0.258837917
11.05911713
387.094298
3.55188E−86 
2.06151E−84 


Gfi1
0.715163437
9.250672945
386.1958488
5.57257E−86 
3.22358E−84 


Plscr1
0.753523551
9.338606765
381.7694026
5.12551E−85 
2.95514E−83 


Gm10076
0.602471507
9.555749844
380.8630837
8.07337E−85 
4.63939E−83 


Ubl5
0.359954618
10.09812301
377.4561365
4.45456E−84 
2.55141E−82 


Capg
0.525034521
10.11973006
375.9622763
9.41997E−84 
5.37772E−82 


Xcl1
2.334924237
9.473572265
373.6035421
3.07328E−83 
1.74875E−81 


Hemk1
0.683812596
9.224911739
373.2693929
3.63374E−83 
2.06094E−81 


Fam101b
−0.826001151
9.238078205
371.9127234
7.17361E−83 
4.05542E−81 


Sub1
−0.312398738
10.73812115
371.8733076
7.31678E−83 
4.12297E−81 


Tnfrsf1b
0.703666663
9.266812765
370.9442092
1.16577E−82 
6.54784E−81 


Arl4c
0.52714599
9.791946773
366.58533
1.03677E−81 
5.80458E−80 


Hba-a2
−0.455920224
9.198210536
366.2675731
1.21582E−81 
6.78522E−80 


AU020206
0.673883407
9.367737735
365.5506469
1.74169E−81 
9.68894E−80 


Hnrnpf
−0.273127308
10.67200379
365.2988081
1.97609E−81 
1.09579E−79 


Hilpda
0.741609608
9.26631349
364.3414744
3.19342E−81 
1.7652E−79 


Il12rb2
0.780042435
9.272220666
363.7489147
4.29814E−81 
2.36833E−79 


Cd200r4
0.745073965
9.245788536
363.332146
5.29697E−81 
2.90949E−79 


Selm
0.724967002
9.255274695
362.2132873
9.2822E−81 
5.08244E−79 


Rpl13
−0.20692553
12.59341642
358.9936129
4.66361E−80 
2.54554E−78 


Itga4
−0.709429771
9.457128938
355.272428
3.01313E−79 
1.63952E−77 


Eef1b2
−0.395983278
10.08532252
354.6347115
4.14843E−79 
2.25023E−77 


Rps27rt
0.40920376
10.6486322
352.6986737
1.09514E−78 
5.92194E−77 


Zap70
0.480186036
9.677477571
352.1255183
1.45976E−78 
7.86915E−77 


Rpl26
−0.219220515
11.49710179
350.9988084
2.56824E−78 
1.38019E−76 


Ass1
−0.614408133
9.641662833
348.5785901
8.64318E−78 
4.63062E−76 


Gm26740
−0.613073552
9.548079775
348.4571538
9.18583E−78 
4.90625E−76 


Zfp36
0.755036205
9.294838731
346.525669
2.41955E−77 
1.28836E−75 


Csrnp1
0.702657077
9.254044021
346.1586592
2.90843E−77 
1.54395E−75 


Cd226
0.652794243
9.387067308
345.9790994
3.18245E−77 
1.68428E−75 


Gpr68
0.666874983
9.328829504
344.9771686
5.25962E−77 
2.77517E−75 


Pabpc1
0.253543554
10.71757424
344.7679366
5.84144E−77 
3.07284E−75 


Gm12840
0.891047188
9.457231655
344.4593021
6.81918E−77 
3.57637E−75 


Cd48
−0.38459015
10.43479465
343.3816553
1.17062E−76 
6.12098E−75 


Sh2d2a
0.579542848
9.466676588
343.2133641
1.2737E−76 
6.64001E−75 


Cxcr5
−0.530471666
9.20561145
343.1932453
1.28661E−76 
6.68732E−75 


Il6ra
−0.569058542
9.20917833
342.7785351
1.58403E−76 
8.20865E−75 


Rpl37a
0.203138206
12.26116013
342.1077689
2.21738E−76 
1.14567E−74 


Lypd8
0.44842715
9.193249939
340.9066075
4.04975E−76 
2.08622E−74 


H2afy
0.371108067
10.00724113
340.4917522
4.98627E−76 
2.56109E−74 


Vmp1
0.567628617
9.458764331
339.5017466
8.19184E−76 
4.19519E−74 


Sh3bgrl3
0.23283736
11.52323202
339.0176875
1.04424E−75 
5.33207E−74 


Gzmm
−0.713492859
9.237177807
338.9103634
1.10198E−75 
5.61045E−74 


Pld3
0.591215902
9.428245291
335.7969448
5.25095E−75 
2.66558E−73 


Rpl7
−0.20865182
11.19387534
329.5334866
1.21449E−73 
6.14731E−72 


Sephs2
0.578851155
9.452454792
328.8405202
1.71919E−73 
8.6767E−72 


Sepp1
−0.737185666
9.351250863
328.6008691
1.93875E−73 
9.75651E−72 


Eef1g
−0.318644983
10.44466423
328.1917319
2.38031E−73 
1.19441E−71 


Anxa6
−0.378854677
10.05966028
327.9775338
2.65025E−73 
1.32604E−71 


Rps16
−0.187940518
12.22909973
325.4524705
9.40299E−73 
4.69126E−71 


Rhoh
0.549715634
9.52013598
325.1010815
1.12151E−72 
5.57934E−71 


Pelo
0.667576923
9.295180382
324.3424209
1.64077E−72 
8.13934E−71 


Rpl15
−0.29061008
10.58474029
322.6470854
3.83987E−72 
1.89942E−70 


Klrg1
−0.895311661
9.277471359
322.4765157
4.18282E−72 
2.06321E−70 


Tmem71
−0.63467876
9.368776477
322.1358738
4.96211E−72 
2.44069E−70 


Ier5
0.533178217
9.643609832
320.6619551
1.03923E−71 
5.09723E−70 


Hspa5
0.441769561
9.991491978
320.244836
1.28106E−71 
6.2657E−70 


Gm27166
0.478783135
9.194488904
319.8860088
1.53367E−71 
7.48017E−70 


2310001H17Rik
−0.69570124
9.36500569
319.8349174
1.57347E−71 
7.65289E−70 


Fam3c
0.611290084
9.369315527
319.6288024
1.74484E−71 
8.46273E−70 


Rpl18
−0.200629143
11.74785
317.5684137
4.9041E−71 
2.37195E−69 


Reg3b
0.438054199
9.193236754
314.9256552
1.846E−70
8.90373E−69 


Ran
−0.432537043
10.02805166
314.4525328
2.34041E−70 
1.12573E−68 


Tesc
0.585196699
9.463706763
310.4006473
1.78627E−69 
8.56818E−68 


Nrgn
0.67256668
9.21031371
310.1873651
1.98796E−69 
9.50946E−68 


E2f2
−0.632366672
9.24570481
309.703225
2.5344E−69 
1.20901E−67 


Sidt1
−0.607133596
9.231615429
309.1636563
3.32214E−69 
1.58047E−67 


Metrnl
0.670144523
9.278658789
307.297602
8.47095E−69 
4.01897E−67 


Ddit4
−0.556082538
9.690594056
307.1181298
9.26894E−69 
4.38562E−67 


Itgb2
−0.379932245
10.0524446
306.9472813
1.00983E−68 
4.7651E−67 


Ptk2b
0.589498004
9.37852549
304.9252424
2.78455E−68 
1.3104E−66 


Stk38
−0.601169306
9.410018622
302.5222046
9.29556E−68 
4.36265E−66 


Krt8
0.394913343
9.191735533
301.4893461
1.56061E−67 
7.29917E−66 


Asap1
−0.713638856
9.28327877
301.4854993
1.56363E−67 
7.29917E−66 


Glrx
0.526069658
9.6245233
301.1671216
1.83441E−67 
8.54031E−66 


Cd96
0.50746649
9.566029171
300.5855052
2.4559E−67 
1.14032E−65 


Msn
−0.354638678
9.969662732
300.3359931
2.78336E−67 
1.28893E−65 


Mmd
0.683389713
9.258719061
299.6070719
4.01215E−67 
1.85304E−65 


Rpl30
−0.249820608
10.85133779
297.5170069
1.14483E−66 
5.27347E−65 


Car5b
−0.612063244
9.237859904
296.8403488
1.60755E−66 
7.38541E−65 


Crbn
0.554618233
9.427304818
296.368566
2.03683E−66 
9.33296E−65 


Phlda1
0.803113616
9.291148392
296.236558
2.17628E−66 
9.94579E−65 


Ggt1
−0.702663215
9.290810258
295.9132706
2.55948E−66 
1.16664E−64 


Atic
−0.635349325
9.302037984
295.1729731
3.71062E−66 
1.68693E−64 


Rgs16
0.765148476
9.216610114
293.8288353
7.28293E−66 
3.30235E−64 


Csnk2b
0.416324203
9.685639631
290.8795747
3.1982E−65 
1.44642E−63 


Gm9843
0.381109199
10.19320765
290.8378149
3.26592E−65 
1.47322E−63 


Rps271
−0.43391813
9.777142341
290.2792293
4.3223E−65 
1.9447E−63 


Iqgap2
−0.638076071
9.307359719
289.8537682
5.3508E−65 
2.40124E−63 


Cirbp
0.504746243
9.53720808
289.2138674
7.37646E−65 
3.30177E−63 


Cd200r1
0.672026366
9.260019867
288.664971
9.71515E−65 
4.33744E−63 


Btla
−0.591546048
9.228534142
286.415877
3.00276E−64 
1.33719E−62 


Phfl1b
−0.53811808
9.475914441
284.1505726
9.35702E−64 
4.15624E−62 


Gng2
0.468934308
9.57488742
282.8266548
1.81815E−63 
8.05538E−62 


Lztfl1
0.726684698
9.295833236
281.3215644
3.86907E−63 
1.70985E−61 


Scn1b
0.440541002
9.1964611
280.6666827
5.37422E−63 
2.36901E−61 


Rpl17
−0.180962475
12.17902552
279.7927545
8.33218E−63 
3.66363E−61 


Tgfb1
0.484671853
9.622712466
279.7162695
8.65817E−63 
3.79738E−61 


Ikzf3
0.655518838
9.312842571
279.698909
8.73392E−63 
3.82098E−61 


Sdf4
0.413417447
9.734416359
279.5030756
9.63574E−63 
4.20154E−61 


2900026A02Rik
0.349760831
9.191105265
279.4997042
9.65205E−63 
4.20154E−61 


Calm1
−0.231941553
11.07867785
278.0942215
1.9539E−62 
8.48413E−61 
















TABLE 2G





Tissue Combined


















GeneSymbol
logFC.TissueColon_IEL
logFC.TissueColon_LPL
logFC.TissueSI_LPL





Vps37b
0.777474128
3.99446302
3.903208385


Rps8
−0.462894732
−0.282560786
−0.227185564


Dnajb9
0.242194076
1.230337941
1.179743784


Gm8369
−0.434682295
0.68750399
0.476744935


Ckb
1.683488654
0.985367182
1.041027108


Nr3c1
0.596866537
1.3763776
1.026938489


Sp100
−0.276734925
−0.946107553
−0.567656721


Gabpb1
0.40379582
1.330686374
0.891949362


Uhrf2
0.100713404
1.227704361
0.927995577


Gm8730
−0.398463357
−0.292225535
0.59358649


Dtx1
−0.612484351
−1.44822264
−0.207521149


Areg
0.212427582
1.905811086
1.755119712


Gpr171
1.020738775
1.026142826
0.96946795


Dusp2
1.26074017
−0.285136711
−0.04232493


Cebpb
0.417904147
1.289160943
1.492710901


Snx18
0.253512243
1.181248291
1.402214668


Lpxn
0.960187902
0.964976389
0.97218611


Atf3
0.221926725
1.430600805
0.663376037


Plcxd2
0.80714267
1.178350458
1.765824897


Tspo
−0.459439563
−0.604962665
−0.816095379


Rps19
−0.488789043
−0.220762212
−0.310099291


Ppp1ca
−0.138260669
−0.481445397
−0.664694124


Prkcq
−0.831805974
−1.064405565
−0.910979538


Bcl2l11
0.298668059
1.269735942
1.018797786


Nfkbie
0.320540429
1.253990691
0.778292075


Tnfaip8l2
−0.656745597
−1.002594927
−1.249789844


AB124611
−1.071538249
−1.025761529
−1.069656175


Rsrp1
0.045934577
−0.695910085
−0.308240957


Vim
−0.426911231
−0.60007612
−1.201605759


Zfp36l1
0.409767222
1.004959319
1.615568571


Ninj1
0.456984649
1.330843731
1.146988409


Fut7
−0.902591648
−1.053104849
−0.949863456


Gm26532
0.78795718
1.322682827
1.290107828


Lin54
0.125129429
1.125966706
1.315252047


Tob2
0.373497726
1.295279865
1.335778732


Stx11
0.108734331
1.219878433
0.820456389


Cxcl10
0.238497963
1.594973302
1.451352068


Rpl37
0.116065648
0.27929211
0.479609638


Malat1
0.589352269
0.540521994
0.566513255


Tmsb4x
0.034205633
−0.250963133
−0.32512786


Wdr1
−0.110386912
−0.7976657
0.69312976


Plscr1
0.820629431
1.375621367
0.946173857


Rpl36
0.109936658
0.304016116
0.591038405


Relb
0.452701151
1.315929558
1.088010985


Ehd1
1.350600781
1.355200628
1.225979164


Rps28
−0.052612178
0.164343875
0.733603222


Hsp90ab1
0.183973249
0.770065508
0.382334631


Anxa6
−0.440796803
−0.777608644
−1.033157811


Map3k8
0.786413742
1.533242075
1.57543773


Hist1h1c
1.156393093
1.914039852
1.713398295


Clic1
−0.126278872
−0.577454964
−0.698476892


Ddit4
−0.550655713
−1.322882165
−1.549423159


AW112010
0.530350631
−0.269167964
−0.120512172


Rbm39
0.121133079
0.591211818
0.666508922


Actn2
1.674186971
1.09423599
1.668343285


Sema4a
−1.076586289
−1.381910022
−1.47235225


S1pr4
−1.055213166
−1.004407804
−1.132415542


Tnfrsf1b
0.839325851
1.485819835
1.360630531


Anxa1
−1.511107054
−1.396051355
−2.188471733


Rpl41
0.089207305
0.269891062
0.458372809


Dennd4a
0.40921547
1.450236431
1.196022302


Emb
0.256860695
1.031210454
0.639730557


Sub1
−0.212606624
0.525046364
0.171178095


Arl4c
−0.49415572
−0.985244078
−1.582854063


Smim3
1.157858029
1.41368162
1.507860613


Ifng
2.239791472
1.729179922
1.492569488


Rgcc
0.283384363
1.767101847
0.447220961


Psmb8
−0.110504023
−0.489140738
−0.649175005


Satb1
−0.73170529
0.829100852
0.63424116


mt-Cytb
−0.546265334
−0.42351736
−0.415001765


Dusp10
0.166031321
1.460807234
1.313007697


Osgin1
1.638804775
0.665375907
1.581835883


Vcpkmt
0.485718496
1.353540366
1.181968319


Chd2
0.490638634
1.209409986
1.442340463


Ifi27l2a
−1.447651542
−1.320038979
−1.014727105


Cnbp
0.328954303
0.714682188
0.750969488


Gngt2
1.6715869
1.008170978
1.394249117


Ptpn7
0.034473291
−1.133069364
−0.919157917


Herpud1
0.052692615
1.177557859
1.034451055


Nrp1
−1.191469771
−1.264227267
−1.279785482


Gch1
0.60986345
1.540707807
0.845457397


Birc3
0.178272259
1.269097181
1.31937574


Cfl1
−0.181428647
−0.482315806
−0.478158167


Vgll4
0.553934184
1.336407518
0.803366983


Kcnn4
−0.66182234
−1.259249871
−1.318323926


Kpna1
0.236709891
1.160296596
1.200898507


Nabp1
0.898469347
1.13108023
0.937505709


Hsph1
0.063771251
1.223646137
0.804849095


Il22
0.636407037
1.727603551
3.375767379


Lrrc58
−0.280678767
−0.931657812
0.078861966


Polg2
0.115967235
0.988832852
0.963823755


Lck
−0.046016642
−0.478587291
−0.328836522


Rps27l
−0.422405737
−0.706969497
−1.151277553


4930523C07Rik
−0.049553342
0.77439766
0.458814483


Capg
0.444179609
−0.258086072
−1.063350641


Rbpj
1.221814752
0.931669327
0.810911354


Aldoa
0.602520735
0.466664486
−0.004097069


Rps17
−0.554098377
−0.38055098
−0.294626154


Zc3hav1
−0.118281001
0.800121918
0.686580555


Ddit3
0.633412182
1.056768321
1.505656004


Camk2n1
1.281680699
1.103759494
0.695796302


Il2rg
0.199050169
0.585724189
0.878628642


Traf4
0.387903813
1.143370115
1.166481487


Hnrnpf
−0.289637392
−0.457763526
−0.442403466


Ppp1r16b
0.722505925
1.131785945
1.123510124


Usmg5
0.338211483
0.562446426
0.884243935


Gm9493
−0.373348956
−0.119724093
0.654836138


Gm20186
0.376387595
0.983081489
1.508057083


Cyba
−0.12164775
−0.398081178
−0.628053762


Zeb1
0.268976051
1.117792672
0.955359161


Gm9843
0.050245934
0.036828943
0.933575173


Rpl27
0.112631873
0.224950706
0.508803925


Dusp4
0.153431151
0.94029633
0.821545552


Tnfrsf9
0.954876882
1.509800497
0.514373324


PhIda1
0.741010016
1.447979137
1.083660668


Map3k14
0.236317904
0.977429196
1.3068537


Slamf6
−1.45895434
−0.965084691
−0.811078956


Ctla2a
0.298799669
1.071932508
0.251123192


Hdac1
0.284581969
−0.596423747
−0.759024583


H2-Q4
0.275988306
0.749276391
1.06798585


Fam46a
0.080223304
1.343132414
0.596687066


Fam65b
−1.112352618
−0.915624467
−0.779034525


Mxi1
0.327724833
1.096423847
0.916698704


Ccr5
1.136442096
1.03663238
1.414443159


D8Ertd738e
0.149173189
0.591554745
0.705970327


Gzmb
1.484474865
1.671588876
1.899825501


Sdf4
0.478973842
0.771120166
0.376506356


Stat3
0.590121867
1.132951528
0.779233082


Zyx
−0.565107863
−1.017829067
−1.105422427


Ms4a4c
−1.135742662
−1.080990165
−1.214454415


Hic1
1.490225264
0.64937241
1.158758155


Rpl23a-ps3
−0.108683292
−0.042050175
0.797803645


Hbp1
0.153253653
1.045263235
1.08918818


Ywhaq
−0.50728297
−0.695383339
−0.933175471


Dtx4
0.325907203
0.900111631
1.402409997


Prdx1
−0.441253622
−0.579820321
−0.84275194


Dapk2
1.504802415
0.556414029
1.01750907


Rpl35
−0.198257565
−0.137039195
0.501566337


Tgif2
0.028216662
1.039982456
0.913047919


Aebp2
0.532530932
1.101390751
1.10384383


Spn
−0.442218027
−0.924628279
−0.908993083


Peli1
0.180571514
0.945055781
0.778179164


Rplp0
−0.40462238
−0.178016
−0.146562691


Insig1
0.334913953
1.102843857
1.570247867


Arpc3
0.335449112
0.581367164
0.431387866


Hk2
0.400462873
1.272037672
0.895345873


Arl6ip5
−0.350457803
−0.638658603
−0.860140937


Reep5
−0.543838571
−0.696314196
−0.957208206


Gpx4
0.416949548
0.78623455
0.456449996


Prdx4
−1.087776303
−1.023745704
−1.086234685


mt-Co3
−0.373726515
−0.283800873
−0.245313316


Slc38a2
0.027794305
0.890981228
1.265084578


Fkbp1a
−0.457711587
−0.609776872
−0.807238893


Cdc42se1
−0.509406321
−0.94083351
−0.723317952


Mfsd6
0.322475507
1.177204896
0.993936731


Hbb-bs
−0.951439469
−0.833727323
−0.920809369


Sgk1
−1.401626324
−0.881994243
−1.153947764


Ccr9
0.472499792
0.23501735
2.246312713


Cdc42
−0.194978171
−0.457363489
−0.492606763


Nr4a3
0.37734512
1.000912689
0.932683465


Sash3
0.284465257
−0.904496449
−0.450998844


Flna
−1.021845631
−0.972657753
−0.939784581


Id2
0.546829646
−0.150446648
−0.594648468


Ccl4
3.615166269
0.52950705
1.537818194


Sik1
0.187430647
1.003588487
1.049624518


Ldlrad4
0.983465129
1.170317969
1.242760762


Sh3bgrl3
0.178502582
−0.151124267
−0.520462292


Selk
0.20817301
0.633800345
0.574745819


Txndc5
−0.793923149
−1.079044363
−1.044409331


Lztfl1
0.811919165
1.025717051
1.778608941


Lilrb4a
1.040771731
1.662603733
1.34866513


Plac8
1.367181977
1.647105676
1.336533536


Pfn1
−0.227374524
−0.464331976
−0.494146426


Got1
0.912228134
2.351604957
2.113401784


Lgals1
−0.94241438
−0.994539931
−1.811527329


Coro1a
−0.383867449
−0.878811184
−0.690027583


Neurl3
1.260230617
2.259242074
2.263083272


Bcl2a1d
1.325205435
1.991992964
2.161429488


Fosl2
0.686981772
2.317777656
2.162692641


Ddx5
0.655299575
0.933006654
1.022505971


Mxd1
1.185545347
2.408175848
2.46113118


Prdx6
0.739133202
1.540245599
1.651132315


Btg2
1.340461972
1.610387778
1.855311255


Zc3h12a
0.368012894
2.196963947
1.920529072


Nr4a1
1.42026219
2.585195396
2.900870393


Fth1
0.438172042
0.958382191
0.695953321


Kdm6b
0.591919262
2.601159919
2.643867444


Ms4a6b
−0.855435822
−1.113772966
−1.061157866


Gpr132
0.493626692
1.832550927
1.916165176


Dgat1
1.068086006
2.507427706
2.268265285


P2ry10
0.323139521
1.961409192
2.046154573


Hspa8
0.262418528
0.947116547
0.507076538


Hif1a
0.506541402
1.846412062
1.394299692


Emp3
−0.885092139
−1.135130594
−1.534190065


Cytip
0.137241836
1.150444566
1.050113634


Arhgap31
0.592761886
1.828812646
2.147009927


Cd160
1.958868733
0.090626817
1.530097888


Ubc
0.781082329
1.059189076
1.267041913


Rora
0.393843317
1.626184495
1.580189974


Arf4
0.450172863
1.33901057
1.4270623


Dnajb1
1.088486132
2.625921173
1.768476477


S100a4
−1.381786387
−1.735446939
−2.192760959


Slc3a2
0.924990309
1.747063943
2.041745429


Skil
1.356501548
2.046292284
2.167743506


Tspan32
−1.855941613
−1.830468648
−1.826575438


Gadd45b
1.644895671
2.363959806
2.524371898


Cd69
2.140083096
1.914092308
2.039146629


Lilr4b
0.990097521
2.072444849
1.943112929


Itgb2
−0.437930531
−1.311953723
−1.34504361


Rasgrp2
−1.64073261
−1.468891321
−1.529423898


Hilpda
0.905718851
2.266685919
2.255743112


Klf2
−1.908273266
−1.798692995
−1.640237406


Itgb7
−0.626689284
−1.091031288
−1.049129185


Samsn1
0.78733775
1.881432949
1.370388308


Nfkbiz
0.564142293
2.33024327
2.303550906


Cd48
−0.503647963
−1.580728968
−1.440014098


Crem
1.206942842
3.204559128
2.776895991


Tnfrsf4
0.711364773
2.978807129
2.192236669


Hspa5
0.512591422
1.816140229
1.534632246


Ifngr1
0.1883354
1.834862227
1.306178775


Ms4a4b
−0.69284433
−1.322205103
−1.664468636


Pim1
0.795270671
2.633332305
2.675211977


Pnrc1
0.753615753
2.106610657
2.294488941


Odc1
0.740493817
3.345533836
2.810015439


Jund
1.182643946
2.186035889
1.805102708


Ctla4
1.41332301
3.559115658
3.332369379


Bhlhe40
0.657224846
2.50015099
2.34894059


H3f3b
0.477447103
1.445573521
1.329294416


Junb
2.293137211
2.821816343
3.206316002


Btg1
1.136233966
2.049380574
2.322550341


Tnfaip3
1.367360021
3.427648559
3.788144571


Rgs1
4.407235959
3.620285869
4.048113626


Ubald2
0.135059491
2.902661389
2.820329823


Dusp5
0.88846288
2.589658521
2.324825039


Tgif1
0.340947728
2.662628566
2.532311028


Eif1
0.243600213
0.897018313
0.883631546


Gramd3
−0.887373725
2.001685574
1.518112402


Ramp3
0.522452694
2.929582726
2.693749522


Orai1
0.427837319
2.054256414
1.840750897


Cd52
−0.037974717
−0.76219941
−0.92083237


Srgn
0.650406948
1.163382845
0.975668862


Akap13
0.784905453
1.650364325
1.687843023


Traf1
0.731922421
1.939073251
1.667369064


Dusp1
2.876266732
3.102439229
3.283532744


Nfkbia
0.475871735
2.098426093
1.964656983


Pde4b
0.340023511
2.135521921
2.032281316


Il21r
1.066352442
2.30984097
2.07051372


Bcl2a1b
1.159629853
2.026583358
2.045369986


Rgs2
1.759347044
3.276603612
2.690971945


Itgb1
−2.939748656
−2.801847036
−3.211007959


Icos
0.760296669
2.291146199
2.058091574


Prr7
0.576910072
2.642494452
2.148843937


Gna13
0.539301733
2.190136992
2.212428937


Ubb
0.608762321
1.16229746
0.888058795


Ifrd1
−0.341562044
2.123182298
2.008949468


Furin
2.373523387
3.208611369
3.210149442


Lmna
0.355749856
2.240959029
−0.139418188


Ctsd
−0.140445912
−1.256042585
−1.271899886


Dnaja1
0.065582453
1.228590453
0.7971197


Crip1
−0.848292102
−0.618979571
−1.41225136


Gpr183
−0.01113956
1.374005606
1.168714694


Rrad
0.234847579
1.697004089
1.594487107


Ccnd3
−0.329577306
−1.091466059
−1.193102261


Nmrk1
0.428665057
1.738810544
1.410635343


Rps29
−0.118044035
0.078118241
0.675561481


Itgae
2.118239644
0.501790147
1.613848439


Rps27rt
0.111778933
0.348355098
1.256433873


Dnajb6
0.42215896
1.048311667
0.903790169


Ptprcap
−0.333296008
−0.877052246
−0.657134231


Itm2b
0.681017998
0.052557376
0.053940026


Maff
0.050178399
1.358068789
1.717191704


Coq10b
0.487474641
1.48815124
1.590649725


Nr4a2
1.446906214
2.322415055
2.418160579


Rnf157
0.220493355
1.530141868
1.533565628


Csrnp1
0.705386191
1.723900036
1.723469654


Asb2
2.113128181
1.044679174
1.30745449


Fosb
0.448314652
1.939752943
1.173309182


Per1
0.223435351
1.324161399
1.655894131


Tnfsf8
0.591517515
2.049539473
1.756714493


Jun
2.701679209
1.602621976
2.540136604


Rpl37a
0.189109219
0.337383963
0.57738162


Ppia
−0.260468097
−0.515647244
−0.498914699


Actr3
−0.264798485
−0.678531948
−0.608192443


Ets1
0.308769926
0.854380244
0.897921106


Tbc1d10c
−0.086644317
−1.048383269
−0.603012764


Ctsw
1.133912136
0.290339316
0.428742181


Rac2
−0.090279627
−0.457497646
−0.519640137


Hspe1
0.125328811
1.183289599
0.848573905


Cirbp
0.671161615
1.276126719
1.325610584


Nrip1
0.295798404
1.495372547
1.599803514


Amica1
1.912537743
0.540771353
0.63720074


Tnfsf11
1.000192602
2.011665838
1.063992968


Ifnar1
0.410475913
1.357726581
1.453941357


Cd3g
0.649613891
0.161480653
0.074462457


Kdm2b
0.35110053
1.500408169
1.365103199


Litaf
1.724751835
1.533159899
1.755054093


Nfkb2
0.309083464
1.45267526
1.126281499


Cnn2
−0.125436839
−0.833705916
−0.656443942


Crbn
0.689883175
1.357746765
1.315931184


Hsd11b1
−0.845495767
−1.422255063
−1.515881372


Fasl
1.24195807
1.680829553
1.40489363


Myl6
−0.303122474
−0.557407151
−0.743323701


Tnfrsf18
0.51027686
1.418821878
0.897476585


Sh2d2a
0.683649276
1.523838419
1.534011293


S100a6
−0.701943112
−0.925981609
−1.558846918


Bin2
−0.716008243
−1.168500998
−0.929495808


Arhgdib
−0.47819901
−0.678544906
−0.662983446


Abi3
2.169958211
0.784928318
1.430075624


Ppp1r15a
1.012213891
1.834038062
2.123484272


Serpinb9
−0.332079489
1.762867925
1.404007136


Cdkn1a
0.659293662
2.26693393
1.978030213


Itk
0.717407706
1.534128909
1.605916535


Glipr2
−1.012290006
−1.288705972
−1.608611968


Pglyrp1
−1.560081733
−1.527481278
−1.707966652


Fam110a
0.441701934
1.956309955
1.205559948


S100a10
−0.686684425
−0.755853614
−1.196982129


Ptp4a1
0.423511875
1.501139578
1.631998685


Arid5a
0.615734799
1.671003212
1.588627125


Hsp90aa1
0.265232836
1.516738352
0.86998671


Fos
3.307489836
1.662604426
2.60078825


Il4ra
0.262122295
1.768613781
1.41559797


Gm12840
0.852894278
2.038425581
2.604479224


Lsp1
−0.469255726
−0.871230904
−0.802596375


Rel
0.328871591
1.654583385
1.684956995


Rpl38
0.304384053
0.391714781
0.80557411


Pycard
−0.68605811
−1.204678987
−1.095961376


Cxcr6
1.481967857
0.614235458
0.242141429


Zfp36l2
−0.069112161
1.097355571
1.827830136


Ptpn22
0.637640602
1.105479795
1.407606827


AI467606
−0.359100183
−1.428559988
−1.619259014


Sqstm1
0.312316129
1.45874511
1.187923862


D16Ertd472e
0.528778168
1.560727657
1.355501147


Ly6c2
−2.635976447
−2.243628333
−2.730896442


Hspa1a
3.317587579
4.024832432
3.280867889


Atp1b3
−1.338905265
−1.163595102
−1.260436923


Srsf5
0.318943246
1.058847246
1.077088912


Rps27
0.105449775
0.336978206
0.811170641


Stk17b
0.539893656
1.082520549
1.239142099


Cd28
0.068398706
1.095601812
0.97109367


Rnf125
−0.044505337
1.467264431
1.164227533


Clk1
0.561911434
1.338154822
1.645145128


Klf6
1.842955526
1.439880235
1.966650811


Apobec3
−0.366808091
−0.852090391
−0.527398995


Ndufa4
−0.442428302
−0.680313916
−0.62851769


Apol9b
1.129514917
0.060106654
0.431228775


Tmem123
0.395783307
0.858468607
0.762317881


Pim3
0.156477935
1.049132589
1.270764685


Rpl39
−0.003885791
0.14733345
0.492421372


Adora2a
0.327386179
1.093504821
0.814533896


Id3
−0.983976649
−1.278212723
−1.408714151


Abcb1b
0.084811939
1.03652624
0.878461297


Calm1
−0.195447541
−0.347331831
−0.60335137


Cdc25b
−1.001522994
−0.97877959
−1.052446445


Phf11b
−0.595465154
−0.962170945
−0.832403232


Arpc1b
−0.172988304
−0.41263938
−0.36702828


Btg3
0.40302651
0.954493008
1.329566612


Socs3
0.534617386
1.276515071
1.205826408


Gpr34
1.406180781
0.523866618
0.752660178


Cd7
0.935530259
−0.713133698
0.512262464


Capn2
−0.394029971
−0.888329339
−1.003188684


Pde4d
0.245207794
0.967356097
0.893857778


Nfil3
0.397653866
1.106103131
0.792415119


Gimap6
0.349265811
0.588644836
0.727785154


Ly6g5b
1.33303203
0.485097242
0.157396087


mt-Atp6
−0.360413265
−0.197400255
−0.170326369


Lfng
−0.266671791
−0.820206738
−1.30945717


Avl9
0.413463318
0.992356488
1.138418506


Esyt1
−0.466108154
−0.899494199
−0.850901825


Itpkb
0.167612218
0.953070885
0.909004332


Irf4
0.02354066
0.928322708
0.868943333


Mir142hg
1.033642023
0.963245615
1.048769847


Nkg7
0.53133988
−0.169812636
−0.218528706


Zcchc11
0.416794184
0.991651408
1.111287695


Prkarla
0.498190887
0.547270984
0.36703625


Def6
−0.079903039
−0.845247189
−0.627240921


Slc9a3r1
0.490368769
−0.270993821
−0.330351807
















GeneSymbol
logCPM
LR
PValue
FDR







Vps37b
10.03454595
30072.7125
0
0



Rps8
11.62809538
2038.340013
0
0



Dnajb9
9.316221247
2038.542663
0
0



Gm8369
9.792018318
2044.58434
0
0



Ckb
9.342944532
2055.399452
0
0



Nr3c1
9.352262661
2059.924855
0
0



Sp100
9.725036992
2060.348785
0
0



Gabpb1
9.366278776
2073.287426
0
0



Uhrf2
9.439369633
2077.350399
0
0



Gm8730
10.38863469
2087.887702
0
0



Dtx1
9.344984765
2098.163291
0
0



Areg
9.282241434
2108.862759
0
0



Gpr171
9.650575449
2109.203412
0
0



Dusp2
9.611670263
2127.669358
0
0



Cebpb
9.3841575
2133.511667
0
0



Snx18
9.268008725
2190.232089
0
0



Lpxn
9.6426486
2193.717339
0
0



Atf3
9.235797229
2208.396751
0
0



Plcxd2
9.299070121
2035.025508
0
0



Tspo
10.07426107
2023.345914
0
0



Rps19
12.63595929
2023.3203
0
0



Ppp1ca
10.49158341
1994.14525
0
0



Prkcq
9.361161976
1853.113558
0
0



Bcl2l11
9.267192159
1854.01069
0
0



Nfkbie
9.322134913
1856.618069
0
0



Tnfaip8l2
9.437338541
1861.9971
0
0



AB124611
9.228809043
1871.487619
0
0



Rsrp1
10.20843239
1878.782142
0
0



Vim
10.67445805
1885.643262
0
0



Zfp36l1
9.441704346
1885.761429
0
0



Ninj1
9.293255705
2231.202495
0
0



Fut7
9.205232517
1929.797777
0
0



Gm26532
9.255741547
1938.00365
0
0



Lin54
9.261013077
1938.45873
0
0



Tob2
9.34461902
1940.459028
0
0



Stx11
9.356175668
1942.830244
0
0



Cxcl10
9.271930887
1943.092733
0
0



Rpl37
11.92011245
1950.728079
0
0



Malat1
14.51807182
1976.820212
0
0



Tmsb4x
14.40631533
1989.761718
0
0



Wdr1
9.737409412
1932.290417
0
0



Plscr1
9.425543981
1845.833759
0
0



Rpl36
11.71243313
2232.517819
0
0



Relb
9.371248744
2289.99945
0
0



Ehd1
9.407112899
2500.528557
0
0



Rps28
11.51231021
2511.446233
0
0



Hsp90ab1
10.9175943
2531.925683
0
0



Anxa6
9.925148315
2535.31738
0
0



Map3k8
9.344670944
2540.995063
0
0



Hist1h1c
9.414339905
2569.222047
0
0



Clic1
10.5597468
2577.83152
0
0



Ddit4
9.550516634
2600.936733
0
0



AW112010
11.67788795
2611.060111
0
0



Rbm39
10.50344179
2642.465618
0
0



Actn2
9.546273651
2644.093081
0
0



Sema4a
9.283140537
2653.703924
0
0



S1pr4
9.586568308
2654.674252
0
0



Tnfrsf1b
9.355129694
2660.647695
0
0



Anxa1
9.411481213
2691.011076
0
0



Rpl41
12.6407868
2731.32137
0
0



Dennd4a
9.274100293
2760.713271
0
0



Emb
10.0275267
2499.689705
0
0



Sub1
10.94059551
2495.827025
0
0



Arl4c
9.658613942
2472.060488
0
0



Smim3
9.29654546
2450.775194
0
0



Ifng
9.645960024
2313.756922
0
0



Rgcc
9.423330348
2323.950455
0
0



Psmb8
10.64253999
2337.404757
0
0



Satb1
9.601014895
2341.400318
0
0



mt-Cytb
11.21803568
2343.700873
0
0



Dusp10
9.359033873
2356.458156
0
0



Osgin1
9.252826914
2372.802143
0
0



Vcpkmt
9.367243143
2393.600427
0
0



Chd2
9.393875664
2268.146622
0
0



Ifi27l2a
10.02903758
2393.718927
0
0



Cnbp
10.09284839
2394.16337
0
0



Gngt2
9.361328315
2400.498408
0
0



Ptpn7
9.466595096
2419.001687
0
0



Herpud1
9.439096692
2425.533038
0
0



Nrp1
9.223298204
2432.20787
0
0



Gch1
9.354399974
2433.304066
0
0



Birc3
9.33752681
2433.841201
0
0



Cfl1
11.32725331
2444.786376
0
0



Vgll4
9.587844265
2393.91655
0
0



Kcnn4
9.466905719
2772.34088
0
0



Kpna1
9.300137202
1843.522866
0
0



Nabp1
9.532328268
1838.067205
0
0



Hsph1
9.370438221
1557.836398
0
0



Il22
9.338583329
1562.121908
0
0



Lrrc58
9.493596476
1562.433427
0
0



Polg2
9.233059976
1579.366602
0
0



Lck
10.49845031
1579.753574
0
0



Rps27l
9.674913084
1579.872913
0
0



4930523C07Rik
9.699182127
1581.475882
0
0



Capg
9.985868123
1585.265244
0
0



Rbpj
9.368575331
1587.924302
0
0



Aldoa
10.22924571
1589.244945
0
0



Rps17
10.6596725
1592.755036
0
0



Zc3hav1
9.554454222
1593.51781
0
0



Ddit3
9.316873219
1601.418493
0
0



Camk2n1
9.323686292
1602.078899
0
0



Il2rg
10.00219656
1605.322872
0
0



Traf4
9.292948329
1608.521941
0
0



Hnrnpf
10.55525903
1613.128498
0
0



Ppp1r16b
9.413801897
1557.800865
0
0



Usmg5
9.936350613
1552.872437
0
0



Gm9493
10.23217758
1549.335257
0
0



Gm20186
9.253161772
1546.807571
0
0



Cyba
10.60431895
1498.529546
0
0



Zeb1
9.301751944
1502.294376
0
0



Gm9843
10.33749646
1503.691737
0
0



Rpl27
11.33055291
1504.195501
0
0



Dusp4
9.213500374
1507.49956
0
0



Tnfrsf9
9.321390476
1509.427303
0
0



PhIda1
9.361394132
1509.496196
0
0



Map3k14
9.283321913
1519.537609
0
0



Slamf6
9.377252261
1615.425761
0
0



Ctla2a
10.09921699
1523.777018
0
0



Hdac1
9.546612696
1527.943772
0
0



H2-Q4
9.630172513
1528.27877
0
0



Fam46a
9.394476103
1532.18059
0
0



Fam65b
9.310020493
1535.116406
0
0



Mxi1
9.258459389
1535.331101
0
0



Ccr5
9.453526865
1545.929884
0
0



D8Ertd738e
9.906338542
1546.031392
0
0



Gzmb
10.14452997
1546.525056
0
0



Sdf4
9.821782432
1526.727595
0
0



Stat3
9.515695899
1840.239522
0
0



Zyx
9.42338924
1618.184248
0
0



Ms4a4c
9.23739877
1629.796583
0
0



Hic1
9.283045422
1737.143544
0
0



Rpl23a-ps3
10.57494605
1741.679055
0
0



Hbp1
9.340839113
1751.790252
0
0



Ywhaq
9.77397317
1756.913129
0
0



Dtx4
9.223206978
1775.308624
0
0



Prdx1
10.11192982
1776.398305
0
0



Dapk2
9.293084109
1780.844891
0
0



Rpl35
11.13718458
1785.683581
0
0



Tgif2
9.23223275
1790.943013
0
0



Aebp2
9.382936752
1810.668654
0
0



Spn
9.544899055
1812.185322
0
0



Peli1
9.632602802
1812.607057
0
0



Rplp0
12.40493661
1817.429013
0
0



Insig1
9.305878553
1819.439028
0
0



Arpc3
10.3928013
1822.685843
0
0



Hk2
9.240976423
1830.502099
0
0



Arl6ip5
9.930300727
1836.898892
0
0



Reep5
9.767497293
1733.322052
0
0



Gpx4
9.948950125
1731.797924
0
0



Prdx4
9.235537849
1731.056056
0
0



mt-Co3
12.20719178
1713.852782
0
0



Slc38a2
9.380152268
1635.802681
0
0



Fkbp1a
9.869140443
1647.111254
0
0



Cdc42se1
9.485319255
1658.571945
0
0



Mfsd6
9.299958076
1663.612597
0
0



Hbb-bs
9.200640448
1664.72306
0
0



Sgk1
9.293049535
1668.770669
0
0



Ccr9
9.24920942
1669.561887
0
0



Cdc42
10.55125063
1672.292717
0
0



Nr4a3
9.219687388
1624.091677
0
0



Sash3
9.392380929
1680.800024
0
0



Flna
9.339442013
1690.430613
0
0



Id2
10.81654571
1695.187398
0
0



Ccl4
10.14764842
1696.147403
0
0



Sik1
9.224860652
1703.135534
0
0



Ldlrad4
9.264750802
1703.376687
0
0



Sh3bgrl3
11.4029623
1704.291179
0
0



Selk
9.923482712
1709.896179
0
0



Txndc5
9.289175725
1710.771391
0
0



Lztfl1
9.35467745
1684.358705
0
0



Lilrb4a
9.500994059
2799.837328
0
0



Plac8
10.29800915
2666.923532
0
0



Pfn1
12.40959764
2823.18042
0
0



Got1
9.572501168
6155.123374
0
0



Lgals1
12.08066005
6170.117639
0
0



Coro1a
11.10558954
6173.409649
0
0



Neurl3
9.445974691
6174.776117
0
0



Bcl2a1d
9.713856957
6253.274041
0
0



Fosl2
9.360613737
6382.142761
0
0



Ddx5
10.94756817
6396.297438
0
0



Mxd1
9.428217948
6638.119592
0
0



Prdx6
9.932199951
6693.369054
0
0



Btg2
10.27784938
6722.847197
0
0



Zc3h12a
9.375963011
6767.694681
0
0



Nr4a1
9.441853787
6805.260947
0
0



Fth1
11.28479407
6872.446213
0
0



Kdm6b
9.499428313
6926.302094
0
0



Ms4a6b
10.51149168
7027.371621
0
0



Gpr132
9.625285306
7072.34788
0
0



Dgat1
9.520162453
7113.950101
0
0



P2ry10
9.409785965
6070.471392
0
0



Hspa8
11.98283195
6067.230307
0
0



Hif1a
9.566468789
5800.541484
0
0



Emp3
10.15792608
5634.940442
0
0



Cytip
9.939689328
4728.057313
0
0



Arhgap31
9.474258321
4796.907361
0
0



Cd160
9.433702154
2814.080819
0
0



Ubc
10.79352095
4856.266946
0
0



Rora
9.735274165
4955.577014
0
0



Arf4
9.74527555
4956.839167
0
0



Dnajb1
9.951049781
4962.650222
0
0



S100a4
10.35643749
5050.816426
0
0



Slc3a2
9.817091287
7244.608843
0
0



Skil
9.427601511
5070.343816
0
0



Tspan32
9.333183118
5088.9466
0
0



Gadd45b
9.530669537
5134.595901
0
0



Cd69
9.782614588
5148.722666
0
0



Lilr4b
9.559633455
5221.957907
0
0



Itgb2
9.853071355
5228.958886
0
0



Rasgrp2
9.546231995
5314.353412
0
0



Hilpda
9.465091188
5456.24451
0
0



Klf2
10.40246321
5566.904066
0
0



Itgb7
10.24576431
5083.968747
0
0



Samsn1
9.573511029
4684.830967
0
0



Nfkbiz
9.434908969
7264.143413
0
0



Cd48
10.15245869
7549.34267
0
0



Crem
9.682165373
11246.04429
0
0



Tnfrsf4
10.12383994
11439.35552
0
0



Hspa5
10.52876384
11491.98875
0
0



Ifngr1
10.6249228
12241.35701
0
0



Ms4a4b
11.32479865
12696.72714
0
0



Pim1
10.31487793
14315.81915
0
0



Pnrc1
10.16392663
14881.26408
0
0



Odc1
9.952419577
15414.75011
0
0



Jund
11.36341037
15875.17087
0
0



Ctla4
9.751318648
16157.30951
0
0



Bhlhe40
10.24123106
18383.23837
0
0



H3f3b
11.89130548
18628.63053
0
0



Junb
11.37526503
19488.80684
0
0



Btg1
11.71813077
19540.27276
0
0



Tnfaip3
9.733547635
19674.48034
0
0



Rgs1
10.88182319
21795.32212
0
0



Ubald2
10.08974357
22204.07143
0
0



Dusp5
9.681302178
11216.17781
0
0



Tgif1
9.475989105
10855.11363
0
0



Eif1
11.52939519
10657.53
0
0



Gramd3
9.833476646
10324.26187
0
0



Ramp3
9.589354936
7595.304751
0
0



Orai1
9.620559436
7682.097248
0
0



Cd52
12.265481
7737.734437
0
0



Srgn
11.04442682
7769.393006
0
0



Akap13
10.01433481
8164.656794
0
0



Traf1
9.817235232
8193.623841
0
0



Dusp1
9.732110949
8513.455523
0
0



Nfkbia
10.38534176
8552.271703
0
0



Pde4b
9.456656488
7281.724662
0
0



Il21r
9.854712698
8723.721998
0
0



Bcl2a1b
10.05711684
8913.380572
0
0



Rgs2
9.702426281
8964.070432
0
0



Itgb1
9.705679139
9226.334266
0
0



Icos
9.895747212
9291.702058
0
0



Prr7
9.545379603
9695.382535
0
0



Gna13
9.680943589
9786.483787
0
0



Ubb
12.53331081
9989.288582
0
0



Ifrd1
9.693003713
10167.64578
0
0



Furin
10.01245811
8904.797941
0
0



Lmna
9.487124604
4658.20846
0
0



Ctsd
9.949305296
4845.431139
0
0



Dnaja1
10.42008114
4631.648037
0
0



Crip1
11.90464273
3132.064265
0
0



Gpr183
9.513344586
3141.680794
0
0



Rrad
9.39537213
3149.5252
0
0



Ccnd3
9.736841478
3152.424211
0
0



Nmrk1
9.349533747
3167.947491
0
0



Rps29
12.07015461
3191.395691
0
0



Itgae
9.329438603
3234.931065
0
0



Rps27rt
10.90517839
3265.713412
0
0



Dnajb6
9.840231332
3283.455427
0
0



Ptprcap
10.30898425
3310.884109
0
0



Itm2b
11.11270922
3315.950892
0
0



Maff
9.240293623
3337.823207
0
0



Coq10b
9.389551852
3344.97829
0
0



Nr4a2
9.378053303
4644.481088
0
0



Rnf157
9.270523021
3363.842169
0
0



Csrnp1
9.355377363
3381.74524
0
0



Asb2
9.517846942
3394.318362
0
0



Fosb
9.303641607
3126.413381
0
0



Per1
9.256131905
3124.848247
0
0



Tnfsf8
9.718612422
3082.301398
0
0



Jun
9.585203942
3082.055112
0
0



Rpl37a
12.4341219
2829.244733
0
0



Ppia
11.75036121
2843.993406
0
0



Actr3
10.45956272
2849.847024
0
0



Ets1
10.064916
2856.422455
0
0



Tbc1d10c
9.730725723
2875.702927
0
0



Ctsw
10.03070607
2876.03227
0
0



Rac2
11.32889337
2877.122189
0
0



Hspe1
9.993360632
2881.352973
0
0



Cirbp
9.674191382
3397.589205
0
0



Nrip1
9.435157115
2943.750441
0
0



Amica1
9.41423544
2949.790876
0
0



Tnfsf11
9.406688169
2954.591251
0
0



Ifnar1
9.421114289
2964.121212
0
0



Cd3g
11.2059335
2977.399621
0
0



Kdm2b
9.339281333
2987.835357
0
0



Litaf
9.380464881
3000.045609
0
0



Nfkb2
9.395165675
3024.090259
0
0



Cnn2
10.16482738
3076.591106
0
0



Crbn
9.56278392
2946.210161
0
0



Hsd11b1
9.443353968
3412.966153
0
0



Fasl
9.476220888
3349.320794
0
0



Myl6
11.14840445
3511.339172
0
0



Tnfrsf18
9.841475941
4250.584103
0
0



Sh2d2a
9.653507549
4255.040768
0
0



S100a6
11.39787222
3469.674452
0
0



Bin2
9.826963154
4264.487697
0
0



Arhgdib
10.97661097
4277.750305
0
0



Abi3
9.391339833
4283.327994
0
0



Ppp1r15a
9.451226916
4287.130131
0
0



Serpinb9
9.595001511
4348.90624
0
0



Cdkn1a
9.482496831
4408.038615
0
0



Itk
9.614921991
4410.719519
0
0



Glipr2
9.696046944
4420.494789
0
0



Pglyrp1
9.506947739
4470.0937
0
0



Fam110a
9.361980417
4511.411134
0
0



S100a10
11.19773491
4516.927676
0
0



Ptp4a1
9.525742489
4529.394015
0
0



Arid5a
9.50033819
4544.040212
0
0



Hsp90aa1
10.36821572
4593.064023
0
0



Fos
9.552464487
4202.563514
0
0



Il4ra
9.363165505
4128.939871
0
0



Gm12840
9.824287347
4262.194424
0
0



Lsp1
10.59943054
3987.168317
0
0



Rel
9.330686608
3532.720938
0
0



Rpl38
11.47201227
3553.915854
0
0



Pycard
9.8090997
3566.116382
0
0



Cxcr6
10.49165114
4030.459915
0
0



Zfp36l2
9.621046058
3625.420712
0
0



Ptpn22
9.913891288
3635.182121
0
0



AI467606
9.43007721
3640.142865
0
0



Sqstm1
9.498888294
3650.157793
0
0



D16Ertd472e
9.472104236
3737.310203
0
0



Ly6c2
9.502687689
3618.463071
0
0



Hspa1a
10.53633121
3787.129231
0
0



Atp1b3
9.546244885
3800.287392
0
0



Srsf5
9.897879383
3863.410621
0
0



Rps27
13.00250321
3869.553469
0
0



Stk17b
9.912060431
3906.395949
0
0



Cd28
10.12482917
3764.96956
0
0



Rnf125
9.417495282
3924.712406
0
0



Clk1
9.595487126
3970.918448
0
0



Klf6
9.797177616
3972.157002
0
0



Apobec3
9.640320763
1495.459668
0
0



Ndufa4
9.876365917
1492.897357
0
0



Apol9b
9.199371767
1487.707525
0
0



Tmem123
9.564567543
1487.503495
0
0



Pim3
9.272489284
1486.441633
0
0



Rpl39
11.64815567
1484.740228
0
0



Adora2a
9.348672319
1483.853226
0
0



Id3
9.247020127
1483.833186
0
0



Abcb1b
9.244761887
1482.289748
0
0



Calm1
10.97692159
1481.737386
0
0



Cdc25b
9.279842463
1481.142685
0
0



Phf11b
9.40303954
1474.921118
0
0



Arpc1b
10.71697209
1472.676489
0
0



Btg3
9.276956785
1467.968361
0
0



Socs3
9.39717008
1464.828407
0
0



Gpr34
9.284399972
1464.226552
0
0



Cd7
9.668408289
1454.523736
0
0



Capn2
9.422824606
1450.935801
0
0



Pde4d
9.22996209
1445.702756
0
0



Nfil3
9.237942693
1431.837424
0
0



Gimap6
10.30711133
1428.814757
0
7.8975E−308



Ly6g5b
9.254627632
1426.806364
0
2.1484E−307



mt-Atp6
12.54893107
1421.705249
5.7448E−308
2.7405E−306



Lfng
9.501444391
1418.204835
3.3025E−307
1.5711E−305



Avl9
9.328579122
1409.911793
2.0816E−305
9.8758E−304



Esyt1
9.431724645
1407.121941
8.3901E−305
3.9698E−303



Itpkb
9.419678004
1402.3989
8.8845E−304
4.1923E−302



Irf4
9.221609323
1396.730424
1.5089E−302
7.1006E−301



Mir142hg
9.267707121
1391.820647
 1.754E−301
 8.232E−300



Nkg7
11.44730108
1387.945816
1.2157E−300
5.6904E−299



Zcchc11
9.302440385
1383.018269
1.4258E−299
6.6559E−298



Prkarla
10.04221526
1363.674016
2.2468E−295
 1.046E−293



Def6
9.460419037
1358.115422
3.6117E−294
 1.677E−292



Slc9a3r1
9.774883184
1355.051977
1.6689E−293
7.7286E−292










Table 3A-3Y. Tables related to the 10×, single-cell sequencing on T cells derived from the in-vivo mouse experiments originating from the small intestine or colonic lamina propria. Table 3A-X Contains the results of 1 vs all differential expression tests for each of the 12 clusters defined in the study. Additionally, contains the results of within-cluster, between-genotype differential expression comparisons. Table 3Y—GWAS.


Table Description and Headings:


Table 3B-3X: Each section contains the output from an edgeR likelihood ratio test


LPL-X vs. All: Differential expression between cells of cluster LPL-X and the remaining cells. Positive log FC values are associated with genes with higher expression in LPL-X than in the remaining clusters.


LPL-X Ctrl vs. KG: Differential expression between the Ctrl cells of cluster LPL-X and the KG cells of cluster LPL-X. Positive log FC values are associated with genes with higher expression Ctrl cells.


Table 3Y: LogFC and FDR are from the respective LPL-X Ctrl vs. KG data. GWAS?represents whether or not the gene is associated with an JBD GWAS loci









TABLE 3A







LPL-0 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Kdm6b
2.107587482
9.740581499
2670.288539
0
0


Actb
1.497848932
13.40498915
2396.01558
0
0


Pim1
1.461379632
10.82584099
2720.504688
0
0


Pdcd4
1.219186897
9.736968363
1010.192462
 1.0935E−221
 4.4192E−218


Ptpn22
0.952379409
10.09353484
1004.31626
 2.0705E−220
 6.6942E−217


Cdkn1b
1.406854085
9.41746112
924.3880645
 4.9003E−203
 1.3203E−199


Skil
1.075200413
9.558821973
630.5081997
 3.8752E−139
 8.9495E−136


Insig1
1.236303319
9.37347705
609.4877932
  1.446E−134
 2.9219E−131


Cbx3
1.138162421
9.518041852
583.4355315
  6.711E−129
 1.2054E−125


Ppp1r16b
1.071177085
9.488149826
577.2586691
 1.4804E−127
 2.3932E−124


Abhd2
1.264504281
9.292308214
557.0948216
 3.6024E−123
 5.2943E−120


Kmt2d
1.182934835
9.264164205
501.3129014
 4.9239E−111
 6.6333E−108


Malat1
0.469300018
14.66860135
468.8149754
 5.8028E−104
  7.216E−101


Notch2
1.144895562
9.219647316
460.7171162
 3.3561E−102
 3.8753E−99


Srrm2
0.728412434
9.808238582
450.9545447
 4.4708E−100
4.81828E−97


Ric1
1.070534111
9.254655607
415.4351764
2.40462E−92
2.42957E−89


B4galt1
0.929978748
9.375488034
378.7315027
2.35036E−84
2.23505E−81


Gm2a
0.806274736
9.581878937
372.8559359
4.47069E−83
4.01518E−80


Gnb1
0.683710369
9.703253309
339.4692154
8.32657E−76
 7.0846E−73


Akap13
0.490064243
10.3088199
317.9684284
 4.0126E−71
3.24338E−68


Birc6
0.899837946
9.320978822
316.6681692
7.70296E−71
5.92981E−68


Ncoa3
0.950672833
9.252526077
311.806689
8.82375E−70
6.48385E−67


Furin
0.768132247
10.38141056
304.7209557
3.08504E−68
2.16838E−65


Actg1
−0.386910949
12.09926089
303.0075558
 7.2868E−68
4.90827E−65


Klf13
0.673649384
9.695536973
286.8107826
2.46304E−64
 1.5927E−61


Alkbh5
0.7944529
9.368743909
269.8374031
1.23125E−60
7.65554E−58


Marf1
0.860276436
9.233752654
237.0707291
1.71172E−53
1.02488E−50


Slc39a1
0.870689481
9.215151083
236.7856356
1.97515E−53
1.14037E−50


Acot2
0.85369456
9.215557552
228.5059564
1.26233E−51
7.03684E−49


Rpgrip1
0.891339331
9.229068972
226.3087385
3.80516E−51
2.05047E−48


Lgals1
−0.482229612
11.62762181
224.1163784
1.14428E−50
5.96725E−48


S100a10
−0.401281287
10.93996309
224.0265794
1.19707E−50
6.04744E−48


Arglu1
0.754488666
9.336509872
221.4240554
4.42349E−50
2.16697E−47


Srsf2
0.517320857
9.857790838
219.0310508
1.47143E−49
6.99619E−47


Dpysl2
0.723664118
9.405651172
217.5019153
3.17171E−49
1.46497E−46


S100a4
−0.950902667
9.86649183
208.771962
2.54561E−47
1.14312E−44


Atxn1
0.741510873
9.344913237
202.2253919
6.82676E−46
2.98274E−43


Zc3hav1
0.547715562
9.665242259
200.5016307
1.62318E−45
6.90533E−43


Klf2
−1.069853137
9.96079822
200.3107523
1.78657E−45
7.40554E−43


Supt16
0.80168198
9.269926089
199.557353
2.60872E−45
1.05432E−42


Crip1
−0.533283322
11.66663236
199.1348964
3.22566E−45
1.27185E−42


Btg1
0.311293881
12.25006794
188.8750979
5.59599E−43
2.15392E−40


Myh9
0.651340239
9.438500102
187.5898867
1.06764E−42
4.01382E−40


Emp3
−0.572932793
9.864609149
179.6697432
5.72175E−41
2.10222E−38


Pitpnc1
0.634559946
9.3795869
168.1865931
1.84181E−38
 6.6166E−36


S100a6
−0.529021515
10.99619486
159.8843786
1.19925E−36
4.21459E−34


Ppm1h
0.63807851
9.32382984
154.0799487
2.22463E−35
7.65177E−33


Erdr1
0.702265193
9.351150867
153.7127232
2.67615E−35
9.01305E−33


H2afz
−0.426974884
10.7655434
153.4276703
3.08892E−35
1.01909E−32


Cdk6
0.69278665
9.323662785
148.8770447
3.05082E−34
9.86392E−32


Whsc1l1
0.512329382
9.540585951
145.903876
1.36256E−33
4.31904E−31


Jund
0.351175103
11.8341681
144.7390714
 2.4491E−33
7.61388E−31


Mbnl1
0.413036368
9.849897993
142.1924147
8.82692E−33
2.69238E−30


Rbm15
0.628984036
9.221090464
133.4475927
7.21627E−31
2.16034E−28


Vim
−0.437802323
10.47337793
131.8303156
1.62971E−30
4.79015E−28


Pan3
0.626656499
9.234208712
129.8623289
4.39208E−30
 1.2679E−27


Btg2
0.352738759
10.53793205
129.3740822
 5.6169E−30
1.59303E−27


Tmf1
0.627601139
9.275192923
129.1549672
6.27249E−30
1.74829E−27


2810417H13Rik
−1.247677001
9.337299453
126.8996408
1.95409E−29
5.35422E−27


Stmn1
−1.206782014
9.430175049
126.1409638
 2.864E−29
7.71656E−27


Yme1l1
0.579622353
9.30034005
126.1065549
2.91409E−29
7.72281E−27


Tacc1
0.604302394
9.2685904
124.1370695
7.86206E−29
2.04997E−26


Rps2
−0.205226981
11.63566325
123.1141609
1.31652E−28
3.37823E−26


Paip1
0.551270107
9.192203166
115.9410137
4.89646E−27
1.23681E−24


Actr2
0.392668307
9.67646915
114.132176
1.21906E−26
3.03189E−24


Picalm
0.555431958
9.321258484
113.9378103
 1.3446E−26
3.29346E−24


Sbno1
0.513517128
9.426293354
113.1197864
2.03125E−26
4.90107E−24


Inpp4a
0.587876896
9.237580327
112.0650956
3.45769E−26
8.22015E−24


Ldha
−0.320721971
10.35600944
111.3867557
4.86835E−26
1.12431E−23


Sik1
0.602626506
9.263004564
111.4022104
4.83054E−26
1.12431E−23


Wtap
0.491265482
9.408000204
110.6189664
7.17102E−26
1.63277E−23


Ets1
0.290857133
10.24994698
109.3408892
1.36644E−25
3.06804E−23


Coro1a
−0.280380953
10.77303317
107.8067187
 2.9631E−25
6.56185E−23


Junb
0.298950285
11.89123884
106.8133985
4.89122E−25
1.06853E−22


Slc25a36
0.582838679
9.248175989
106.3278949
6.24906E−25
1.34696E−22


Vps54
0.565971111
9.235814078
103.7126119
2.33898E−24
4.97525E−22


Slc24a5
0.553964628
9.200019039
103.63554
2.43176E−24
5.10543E−22


Tra2b
0.370231771
9.814904189
103.315665
2.85785E−24
5.92307E−22


Gm11713
0.572636965
9.228906171
103.2557973
2.94552E−24
6.02751E−22


Ms4a4b
−0.307441662
10.75184171
100.524946
1.16915E−23
2.36256E−21


Ubc
−0.296729819
11.05003167
100.4017801
1.24416E−23
 2.4831E−21


Gapdh
−0.27320874
10.56202545
99.15190914
2.33857E−23
4.61041E−21


Atp5b
−0.290696215
10.21322353
98.82442542
 2.7591E−23
5.37394E−21


Clk1
0.36378697
9.76646424
96.66015417
8.23092E−23
1.58406E−20


Rbm39
0.215576064
10.68049787
92.55576108
6.54543E−22
1.24486E−19


Tuba1b
−0.552571308
9.729974254
92.05832174
8.41593E−22
 1.582E−19


Ass1
−0.523431526
9.534289055
91.07958592
1.38008E−21
2.56441E−19


Gm28875
0.563226861
9.244792702
90.68509289
1.68458E−21
3.09464E−19


Ran
−0.404512958
9.801116978
89.98963
2.39412E−21
4.34868E−19


Mxd1
0.445030151
9.600631761
88.53118238
5.00398E−21
8.98826E−19


Cdc42
−0.241615643
10.40474043
88.09235834
6.24685E−21
1.10974E−18


Dctn4
0.515634719
9.226791755
87.91551187
6.83109E−21
1.20034E−18


Tagln2
−0.315292626
10.29861125
85.67548392
2.12025E−20
3.68559E−18


Pycard
−0.480518193
9.577079204
85.3625029
2.48386E−20
4.27172E−18


Iqgap1
0.367736638
9.634427689
85.30814659
2.55309E−20
4.34456E−18


Ccna2
−0.429260011
9.193741049
85.24349744
2.63795E−20
4.44219E−18


Rps17
−0.238111557
10.6149625
84.2556873
4.34751E−20
7.24555E−18


Tspo
−0.3241737
9.918108481
82.82928905
8.94546E−20
1.47564E−17


Birc5
−0.774306859
9.251476471
82.78125795
9.16549E−20
1.49666E−17


Rps20
−0.199278964
11.06854686
82.45020041
1.08366E−19
1.75185E−17


Lsp1
−0.289441501
10.32146402
82.23662981
1.20732E−19
1.93242E−17


Tmsb4x
−0.124205111
14.24920305
81.97789106
1.37618E−19
 2.1811E−17


Anxa2
−0.424357411
9.842409891
81.44249127
1.80436E−19
2.83198E−17


Slc25a5
−0.256183417
10.39387945
80.44715179
2.98585E−19
4.64127E−17


Twistnb
0.466840475
9.374854863
80.3380422
3.15535E−19
4.85804E−17


Vmp1
0.412669378
9.490475476
79.90893633
3.92069E−19
5.97943E−17


Erh
−0.369077248
9.741195422
79.50363006
 4.8134E−19
7.27228E−17


Luc7l2
0.340413015
9.66558153
78.75848933
7.01865E−19
1.05059E−16


Hmgb2
−0.305301671
10.71128878
77.75424372
1.16692E−18
1.73069E−16


2310035C23Rik
0.479288441
9.250856289
77.25219276
1.50464E−18
2.21128E−16


D17H6S53E
0.406173804
9.17696648
76.49933424
2.20287E−18
3.20826E−16


Fhl3
0.398167305
9.169266684
76.3836551
2.33577E−18
3.37143E−16


Rpl10a
−0.169361349
11.14217591
73.76932407
8.78005E−18
1.25609E−15


Ube2c
−0.641235053
9.233348605
72.70415792
1.50616E−17
2.13585E−15


Rpl32
−0.117506557
12.44734553
72.55274494
1.62627E−17
2.28611E−15


Rpl7
−0.15134652
11.21186942
71.29300761
3.07925E−17
4.26112E−15


Rpl28
−0.19927858
10.72551078
71.29000083
3.08395E−17
4.26112E−15


4933434E20Rik
0.427011884
9.335042118
71.15520058
3.30201E−17
4.52376E−15


Myef2
0.473342591
9.220160509
70.98360765
3.60205E−17
4.89334E−15


Asf1b
−0.519244424
9.223192204
69.8277614
6.47156E−17
8.71827E−15


Hsf2
0.362266417
9.168337049
69.71039283
6.86833E−17
9.17631E−15


Arhgdib
−0.215029523
10.73176838
69.28228906
8.53324E−17
1.13072E−14


Ube2h
0.460203792
9.263527957
68.76398418
1.10981E−16
1.45863E−14


Gsk3b
0.407848736
9.383828957
68.63067832
1.18742E−16
1.54806E−14


Itgb1
−0.651985291
9.299264118
68.61024305
1.19979E−16
1.55167E−14


Rps27a
−0.126520352
11.80972706
68.55707054
1.23258E−16
1.58142E−14


Brd4
0.414924172
9.358976296
68.13900406
1.52367E−16
 1.9395E−14


Pkm
−0.263117525
10.16193974
67.81711708
1.79385E−16
2.26558E−14


Eif4a1
−0.22402961
10.43971408
67.73133076
1.87363E−16
2.34799E−14


Rpl10
−0.154085529
11.48655718
67.63680055
1.96564E−16
2.44435E−14


Cdca3
−0.407079178
9.196715741
67.36575915
2.25532E−16
2.78317E−14


Rps8
−0.141029567
11.59257343
67.11812291
2.55717E−16
3.13176E−14


Cd48
−0.386951826
9.721176096
66.9921926
2.72585E−16
3.31323E−14


Paxbp1
0.466529975
9.251251081
66.57229938
3.37293E−16
4.06916E−14


Rps3
−0.111776312
11.96705488
66.29601134
3.88043E−16
4.64674E−14


Otub1
0.41672661
9.332259923
66.2658541
3.94026E−16
4.68369E−14


Myl6
−0.177794839
10.93119837
65.70031043
5.24976E−16
6.19472E−14


Rnf157
0.433755297
9.351493602
64.59611437
9.19365E−16
1.07699E−13


Rps10
−0.147538768
11.22179603
64.31354938
1.06113E−15
1.23412E−13


Eef1a1
−0.110321731
12.38176503
63.52961517
1.57974E−15
1.82415E−13


Rps12
−0.195856238
10.77060475
63.26015038
1.81132E−15
2.07672E−13


Gnb2l1
−0.190267377
10.54006448
62.23026714
3.05555E−15
 3.4786E−13


Nusap1
−0.491535516
9.207147356
61.59057605
4.22838E−15
4.78013E−13


Il18r1
0.368848685
9.526791354
61.355196
4.76532E−15
5.34973E−13


Gzmk
−0.690300473
9.363676844
61.27842647
 4.9548E−15
5.52409E−13


Tyms
−0.498994778
9.238838131
61.20745879
5.13666E−15
5.66822E−13


Lrrc8a
0.409765583
9.190599691
61.20074377
5.15421E−15
5.66822E−13


Cdca8
−0.458035324
9.207869503
60.94749215
5.86176E−15
6.40278E−13


Rrm2
−0.611980984
9.247497636
60.56190851
7.13004E−15
7.73586E−13


Ccnb2
−0.485513492
9.212240288
59.84990711
1.02374E−14
1.10332E−12


Rpl31
−0.170290124
10.87151483
59.78576465
1.05766E−14
1.13232E−12


Pnrc1
0.208894663
10.57788165
59.46508287
1.24483E−14
1.32395E−12


Clic1
−0.227413644
10.32554613
59.07912283
1.51458E−14
 1.6003E−12


Ccnb1
−0.297805543
9.183009169
58.84515862
1.70581E−14
1.79066E−12


Gnl3l
0.393730748
9.189382723
58.79316531
1.75149E−14
1.82674E−12


Zscan26
0.396044821
9.188162719
58.13789649
2.44373E−14
2.53239E−12


B2m
−0.093766772
12.79982
57.0257555
4.30142E−14
4.42909E−12


Gm26699
0.375519253
9.394464865
56.90560992
 4.5724E−14
4.67831E−12


Rplp0
−0.108717289
12.38775842
56.85972585
4.68034E−14
4.75864E−12


Rpsa
−0.129421707
11.60009635
56.83524585
4.73896E−14
4.78813E−12


Plcxd2
0.426020085
9.360396846
56.77268616
4.89214E−14
 4.9122E−12


Wnk1
0.324700375
9.627959621
56.58347879
5.38625E−14
5.37494E−12


Foxo3
0.45328937
9.215455773
56.21309552
 6.5027E−14
6.44924E−12


Fbxo46
0.342072366
9.178401822
56.16217377
6.67331E−14
 6.5781E−12


Abcg1
0.404303623
9.204739969
56.05560672
 7.045E−14
6.90239E−12


Cks1b
−0.545261815
9.261603647
55.41157135
9.77593E−14
9.52034E−12


Eomes
−0.641532838
9.215520909
55.26385568
1.05389E−13
1.02019E−11


Ddx3y
0.488648104
9.286792787
55.16274371
1.10952E−13
1.06765E−11


Lbh
0.382006384
9.408476281
54.62758716
1.45676E−13
1.39349E−11


Ppia
−0.134187803
11.56530329
54.30730708
1.71463E−13
1.62098E−11


Cdkn1a
0.406730252
9.693181563
54.31309281
1.70959E−13
1.62098E−11


Rpl7a
−0.167038867
10.71263743
53.61755631
2.43573E−13
 2.2893E−11


Gngt2
0.409025485
9.363461133
52.9479409
3.42507E−13
3.20056E−11


Rps7
−0.11087119
11.94311471
52.54889015
 4.1967E−13
3.89907E−11


Itgb7
−0.270792151
9.956558259
52.49357441
4.31658E−13
3.98754E−11


Neurl3
0.323822382
9.619672539
52.41712233
4.48794E−13
4.12227E−11


Rplp1
−0.124745324
11.7032513
52.07151016
5.35158E−13
4.88777E−11


Mcmbp
0.413813179
9.263665081
51.20857013
8.30552E−13
 7.5431E−11


Itpkb
0.339679714
9.50966549
51.02768436
9.10724E−13
8.22501E−11


Rpl23
−0.117810619
11.70858916
50.8216993
1.01149E−12
9.08433E−11


Glipr2
−0.378200114
9.484106509
50.74315683
1.05279E−12
9.40298E−11


Rplp2
−0.114755509
11.91005984
50.19613435
1.39122E−12
1.23574E−10


Ppib
−0.241497971
9.880914383
49.93316246
1.59073E−12
1.40523E−10


Rbbp7
−0.389687456
9.3983099
49.65461608
1.83338E−12
1.61079E−10


Etv3
0.407752576
9.25329147
49.62740311
1.85899E−12
1.62446E−10


Ptma
−0.16554087
11.28820186
49.53884871
1.94482E−12
1.69032E−10


Hmgb1
−0.226258893
10.2970404
49.01334479
2.54227E−12
2.19777E−10


Arhgap31
0.330556748
9.65435635
48.91411752
2.67419E−12
2.29952E−10


Gigyf1
0.347864515
9.189703078
48.79333282
2.84405E−12
2.41067E−10


Txn1
−0.239849684
10.00206855
48.790484
2.84818E−12
2.41067E−10


Rasgrp2
−0.418570333
9.377071127
48.79152979
2.84667E−12
2.41067E−10


Clasp2
0.332052036
9.17236319
48.4325801
3.41841E−12
2.86332E−10


Rps3a1
−0.108391678
11.67388738
48.43755822
3.40975E−12
2.86332E−10


Hnrnpk
−0.203363418
10.15623829
48.37079186
3.52784E−12
2.93974E−10


Dut
−0.4252743
9.370293948
47.66015211
5.06891E−12
4.20225E−10


1500009L16Rik
−0.436094888
9.246962693
47.54794259
5.36751E−12
 4.4271E−10


Rps23
−0.091493016
12.48529685
47.41265727
5.75101E−12
4.71933E−10


Rpl5
−0.166750551
10.56753913
47.10915065
6.71415E−12
5.48187E−10


Cdc45
−0.176040165
9.168332637
46.94437406
7.30303E−12
 5.9327E−10


Psma4
−0.320075079
9.543453421
46.8948269
7.49002E−12
6.05418E−10


Dusp5
0.244343465
9.994465583
46.81799425
7.78949E−12
6.26492E−10


Tgif1
0.288197973
9.720285893
46.55851466
 8.8923E−12
7.11648E−10


Iqsec1
0.306868317
9.175097412
46.31161233
1.00864E−11
8.03238E−10


Arhgap26
0.362226979
9.20131511
46.26928545
1.03067E−11
8.16756E−10


Smc2
−0.457838158
9.240576863
46.18600984
1.07542E−11
8.48062E−10


Aurkb
−0.227897739
9.176287527
46.17329213
1.08243E−11
8.49441E−10


Themis
0.338780405
9.406121809
46.15809092
1.09086E−11
8.51922E−10


Rad51ap1
−0.168933582
9.168873929
45.83353646
1.28741E−11
1.00059E−09


Ddit4
−0.457302383
9.366175801
45.70124776
1.37735E−11
1.06285E−09


Set
0.268072579
9.77371175
45.6965463
1.38066E−11
1.06285E−09


Bcl2l1
0.374282608
9.376443509
45.58015518
1.46519E−11
1.12257E−09


Tpx2
−0.255816003
9.180936262
45.48370732
1.53914E−11
1.17367E−09


Uvssa
0.357771198
9.191219939
45.45775589
1.55967E−11
1.18374E−09


Uhrf2
0.345073862
9.554452999
45.43283888
1.57964E−11
1.19329E−09


Rbm3
−0.174412186
10.73098646
45.27873534
1.70895E−11
1.28497E−09


Rap2b
0.386872593
9.217861261
45.25646564
1.72849E−11
1.29365E−09


Ahnak
0.279946145
9.648666059
45.20386587
1.77554E−11
1.32274E−09


Anp32a
−0.238121521
9.878253526
44.91218759
2.06071E−11
1.52814E−09


Anxa6
−0.266357286
9.747058157
44.88962553
2.08459E−11
1.53879E−09


Hspa5
−0.188078636
10.97852379
44.34155639
2.75799E−11
2.02662E−09


Calr
−0.237935659
10.02077588
44.24976673
2.89039E−11
 2.1143E−09


Tk1
−0.276494249
9.186384692
44.05815286
3.18763E−11
2.32123E−09


Ezr
−0.28511791
9.722755344
43.93118787
3.40126E−11
2.46568E−09


Peli1
0.262373761
9.756230653
43.77706211
3.67993E−11
2.65579E−09


Hmmr
−0.151166002
9.167541924
43.57211811
 4.0862E−11
2.93589E−09


Dbi
−0.354303671
9.462114256
43.44556351
4.35919E−11
3.11817E−09


Hint1
−0.205762868
10.08266688
43.31598681
4.65763E−11
3.31697E−09


Snrpe
−0.239207361
9.827296541
43.27064695
4.76681E−11
3.37984E−09


Tppp3
−0.326363173
9.18599552
43.02109733
5.41527E−11
3.82285E−09


Cct8
−0.301160499
9.521391609
42.40689585
7.41282E−11
5.21025E−09


Hmgcr
0.36841636
9.25124838
42.32625686
7.72485E−11
5.40606E−09


Ly6c2
−0.697969266
9.265996044
42.30561042
7.80683E−11
5.43988E−09


Tnfaip3
0.227027416
10.12507605
42.22671488
8.12821E−11
5.61541E−09


Mki67
−0.3515189
9.202982177
42.22810773
8.12242E−11
5.61541E−09


Rrm1
−0.384070718
9.219634699
41.86633532
9.77309E−11
6.72305E−09


Hist1h2ap
−0.286036608
9.18659925
41.65572091
1.08846E−10
7.45598E−09


Stim2
0.362672122
9.238378298
41.47872855
 1.1916E−10
8.12805E−09


Fn3krp
0.184846223
9.161101118
41.29537404
1.30878E−10
8.88982E−09


Bmp2k
0.358909864
9.218888635
41.24306732
1.34428E−10
9.05483E−09


Rps24
−0.101666272
12.00584544
41.25017653
 1.3394E−10
9.05483E−09


Spc24
−0.346692321
9.204100128
40.95893737
1.55461E−10
1.04282E−08


Hnrnpa2b1
−0.196534148
10.12046099
40.88778863
1.61225E−10
1.07274E−08


S1pr1
−0.422059619
9.290338593
40.88748874
 1.6125E−10
1.07274E−08


mt-Atp6
0.102698372
12.47134724
40.86302484
1.63281E−10
1.08181E−08


Prdx1
−0.232856001
9.945082204
40.62557883
1.84377E−10
1.21659E−08


Xist
−0.490990751
9.888398691
40.56781288
1.89909E−10
 1.248E−08


Smap2
0.28963393
9.515102178
40.50424865
1.96189E−10
1.28404E−08


Rpl26
−0.103119108
11.57423238
40.39614168
 2.0735E−10
1.35162E−08


Btf3
−0.134387238
10.715474
40.35161787
 2.1213E−10
1.37722E−08


Rps4x
−0.09543889
11.84794084
40.24202475
2.24369E−10
1.45086E−08


Naca
−0.135088853
10.80132827
40.22731503
2.26065E−10
 1.456E−08


Zbtb21
0.346325707
9.20850205
40.1126819
2.39728E−10
1.53787E−08


Ppp1ca
−0.180999333
10.29795938
40.09980116
2.41314E−10
1.54193E−08


Anp32e
−0.31717177
9.516881137
39.89016764
2.68652E−10
1.70985E−08


Cct4
−0.269302589
9.5936703
39.78464151
2.83566E−10
 1.7977E−08


Yes1
0.387710552
9.221085842
39.58488074
3.14106E−10
1.98353E−08


Reep5
−0.27118009
9.637135956
39.51909329
3.24867E−10
2.04351E−08


Sept2
0.342873186
9.274290012
39.48946663
3.29834E−10
 2.0667E−08


Rpl35a
−0.09831683
11.7234212
39.28221717
3.66766E−10
2.28925E−08


Cotl1
−0.182341504
10.46112717
39.11250618
4.00073E−10
2.48753E−08


Il7r
0.272892916
9.753485896
38.72699605
4.87421E−10
3.01902E−08


Psmb7
−0.295620167
9.46523868
38.2618874
6.18591E−10
3.81685E−08


Atf7ip
0.365085149
9.253987334
37.9190664
 7.3741E−10
4.53269E−08


Hnrnpul1
0.306269675
9.37910581
37.75916648
8.00397E−10
4.90122E−08


Cdkn3
−0.220464584
9.177347936
37.69331595
8.27877E−10
5.05037E−08


Dnajb1
0.393957367
10.31781379
37.62379926
8.57913E−10
5.21392E−08


Cd2
−0.195141092
10.31973533
37.56156193
8.85728E−10
 5.3628E−08


Klhl9
0.321655077
9.198908172
37.50704817
9.10833E−10
5.49422E−08


Cenpm
−0.21208704
9.175769069
37.44666956
 9.3947E−10
 5.6459E−08


Mcm2
−0.372335465
9.227695356
37.4049719
9.59771E−10
5.74654E−08
















TABLE 3B







LPL-1 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Actb
−1.788578756
13.40456535
1969.985989
0
0


Vps37b
0.895007394
10.60462528
1103.972392
 4.5239E−242
 3.6566E−238


S100a4
−2.066980708
9.866840932
990.3446629
 2.2542E−217
 1.2147E−213


S100a6
−1.154115196
10.99649875
760.3528646
 2.2508E−167
 9.0966E−164


Crem
1.135777664
10.06722635
752.2332434
 1.3116E−165
 4.2408E−162


Ifngr1
0.612024932
11.11302914
721.8445664
 5.3157E−159
 1.4322E−155


Pfn1
−0.538711172
12.14558847
686.3702201
 2.7519E−151
 6.3553E−148


Plac8
1.128214216
10.5691871
665.727518
 8.4869E−147
  1.715E−143


Klf2
−1.940850631
9.960578273
662.9676093
 3.3803E−146
 6.0718E−143


Rgs2
1.097780206
10.06000559
658.8370261
 2.6746E−145
 4.3237E−142


Got1
1.084074843
9.855972072
655.3423412
 1.5391E−144
 2.2619E−141


Il21r
0.809669496
10.19619539
636.1687863
  2.276E−140
 3.0662E−137


Coro1a
−0.610607496
10.77323885
589.3688971
  3.437E−130
 4.2741E−127


Serpinb9
1.081184718
9.858313142
578.5602139
 7.7137E−128
 8.9071E−125


Eif1
0.337833647
11.85889679
560.5165898
  6.49E−124
 6.9945E−121


Lgals1
−0.72773285
11.62802019
535.1379291
 2.1536E−118
  2.176E−115


Lsp1
−0.654984065
10.32147718
488.4511929
 3.0961E−108
 2.9442E−105


Ptprcap
−0.783000793
10.0401488
488.2382418
 3.4447E−108
 3.0937E−105


Pycard
−1.085203588
9.577184042
487.7836331
 4.3258E−108
 3.6806E−105


Dgat1
0.89679146
9.778871165
483.8844962
 3.0514E−107
 2.4664E−104


Fosl2
0.952434136
9.53162468
477.9445926
 5.9841E−106
 4.6066E−103


Rps27rt
0.520913608
11.16205822
470.2190332
 2.8715E−104
  2.11E−101


Neurl3
0.799145197
9.619598144
457.07289
 2.0839E−101
1.46474E−98


Rps27
0.285776264
13.23482323
418.9475401
4.13549E−93
 2.7856E−90


Fth1
0.376259293
11.58476825
415.2458293
 2.644E−92
1.64396E−89


Tmsb4x
−0.273689693
14.24925717
415.3072706
2.56382E−92
1.64396E−89


H2-K1
0.343352537
11.6100296
411.2718478
1.93767E−91
1.16016E−88


KIrc1
1.023930603
9.658425729
411.0322548
 2.1849E−91
1.26147E−88


Ubald2
0.549709616
10.62002464
403.3569592
 1.0237E−89
5.70662E−87


Cd52
−0.444841022
11.79358725
396.9799802
2.50243E−88
1.34847E−85


Cfl1
−0.392116577
11.11291947
384.8948211
1.06979E−85
5.57879E−83


Il4ra
0.774913613
9.499541933
367.1576528
7.78158E−82
3.93116E−79


Dusp5
0.581228407
9.994361734
364.1948693
3.43699E−81
1.68371E−78


Samsn1
0.721144616
9.795511159
359.8134916
3.09169E−80
1.47001E−77


Fgl2
0.863824189
9.496139473
356.3691619
 1.7386E−79
8.03034E−77


Rps21
0.368294596
10.92388869
355.6060267
2.54903E−79
1.14466E−76


Arhgdib
−0.446836849
10.7318272
353.5929365
 6.9942E−79
 3.0559E−76


H2-D1
0.251752892
12.28194438
353.1089558
8.91515E−79
3.79269E−76


Gna13
0.565688846
9.98513228
340.9752456
3.91273E−76
1.62188E−73


Ddx5
0.344568543
11.1991571
340.3406904
5.37866E−76
2.17379E−73


Cnn2
−0.654811498
9.902885218
336.4034115
3.87396E−75
1.52748E−72


Emp3
−0.70120027
9.864713566
333.8561537
1.38972E−74
5.34909E−72


Cd48
−0.798426594
9.72124298
328.3159143
2.23659E−73
8.40854E−71


Pik3r1
0.73885528
9.484799174
319.99719
1.45049E−71
5.32921E−69


Lilrb4a
0.738717163
9.646925283
318.7921692
2.65457E−71
 9.5364E−69


Ndufa4
−0.679488465
9.73553315
315.5972178
1.31808E−70
 4.6322E−68


mt-Co3
−0.28661259
12.09929008
308.8719528
 3.8456E−69
1.32272E−66


Prr7
0.638751806
9.824437298
306.931633
1.01779E−68
3.42783E−66


Fasl
0.69087468
9.594176945
306.2337496
1.44442E−68
 4.7654E−66


Slc25a5
−0.452500278
10.39410252
304.0526899
4.31366E−68
1.39469E−65


Rac2
−0.337772566
11.09602488
296.8583091
1.59313E−66
5.04992E−64


Dnaja1
0.566084182
10.76357045
294.7162074
4.66622E−66
1.45066E−63


Nrip1
0.732165744
9.582519625
288.2422587
1.20104E−64
3.59555E−62


Arpc3
0.372459303
10.54021408
288.2457578
1.19893E−64
3.59555E−62


Litaf
0.809822856
9.445009121
284.4411901
8.08743E−64
2.37712E−61


Arpc1b
−0.375752302
10.55364549
281.7754455
3.08106E−63
8.89436E−61


Tubb5
−0.772688378
10.00334547
281.1572307
4.20163E−63
1.19164E−60


Ctla2a
0.700790544
10.33575323
279.3695207
1.03036E−62
2.87186E−60


Rpl37a
0.210248664
12.61564007
277.6971692
2.38468E−62
6.53402E−60


Bin2
−0.728028996
9.612828291
277.1285376
3.17211E−62
8.54673E−60


Wdr89
0.513393949
10.42643281
274.3649881
1.26942E−61
3.36418E−59


Eif5
0.511485385
9.823441033
269.7699212
1.27366E−60
3.32097E−58


Nabp1
0.636082496
9.632410631
268.2210034
2.77101E−60
7.11051E−58


Klrk1
0.934839579
9.564414696
268.1106967
2.92873E−60
 7.3978E−58


Rplp0
−0.218100349
12.38791042
267.9073344
3.24342E−60
8.06663E−58


Rcbtb2
0.809053481
9.39894406
265.5508845
1.05829E−59
2.59216E−57


Rpl38
0.237996532
11.67460313
258.5201237
3.60659E−58
8.70212E−56


Tmem176a
−1.165497721
9.404480668
252.8672547
6.15696E−57
1.46373E−54


mt-Atp6
−0.243334052
12.4711756
248.1279894
6.64601E−56
1.55709E−53


Capzb
−0.431404911
10.15899075
247.9573988
7.24023E−56
1.67208E−53


Clic1
−0.422522733
10.32564272
246.7932166
1.29887E−55
2.95739E−53


Ifrd1
0.521730657
10.02583298
238.8278921
7.08402E−54
1.59056E−51


Nfkbia
−0.581770075
10.83335684
237.7851151
 1.1958E−53
2.64812E−51


Usmg5
0.41505392
10.06859317
237.6977148
1.24944E−53
2.72953E−51


Nr3c1
0.688319036
9.448726347
237.0161873
1.75925E−53
 3.792E−51


Actr3
−0.415162569
10.23427966
234.8065523
5.33531E−53
1.13488E−50


Ppp1ca
−0.397132915
10.29810957
233.8723064
8.52878E−53
 1.7906E−50


Cnbp
0.356953072
10.25780671
233.8107991
 8.7963E−53
1.82309E−50


Gimap6
0.391836768
10.4658122
231.7934375
2.42231E−52
4.95685E−50


Gnai2
−0.456079708
10.17424924
231.4370798
2.89697E−52
5.85405E−50


Pglyrp1
−0.932489522
9.331204668
231.4010017
2.94993E−52
5.88747E−50


Rplp2
0.21411519
11.91020827
230.6878952
4.22012E−52
8.31982E−50


Lilr4b
0.578605702
9.77812791
228.9456823
1.01222E−51
1.97151E−49


Irak2
0.726366279
9.278620156
226.4881484
3.47731E−51
6.69217E−49


Rpl35
−0.293445674
11.18862876
225.0845461
7.03672E−51
 1.3383E−48


Lmna
0.838878501
9.713616963
223.8901563
1.28196E−50
2.40979E−48


Cbx3
−0.793973529
9.51797351
221.1859312
4.98546E−50
9.26378E−48


Itk
0.497130976
9.814380172
220.0345571
8.88885E−50
1.63292E−47


Jun
−1.278105538
9.603448288
218.9495885
1.53288E−49
2.78433E−47


Ifitm2
0.728838581
10.68450898
218.2894633
2.13551E−49
3.83585E−47


Nr4a2
0.715704419
9.52121308
217.1365889
3.81052E−49
6.76933E−47


P2ry10
0.557735676
9.588148915
216.0497309
6.57768E−49
1.15581E−46


Dennd4a
0.661822792
9.353169932
215.1945639
 1.0107E−48
1.75688E−46


Dnajb6
0.402259307
10.0235756
214.4131266
1.49656E−48
2.57376E−46


Rps24
0.201933056
12.00595021
212.9332807
3.14722E−48
5.35558E−46


Il12rb2
0.713180429
9.345960823
210.587897
1.02236E−47
1.72161E−45


Fus
0.415736893
9.89924265
209.6682075
1.62276E−47
2.70449E−45


Actg1
−0.305072557
12.09966478
209.2739452
1.97821E−47
3.26323E−45


Cotl1
−0.387624119
10.46139499
208.5595047
2.83234E−47
4.62502E−45


Hilpda
0.643315922
9.667586402
207.5609804
4.67741E−47
 7.5615E−45


Abracl
−0.459491705
9.935333895
204.9361765
1.74868E−46
2.79893E−44


Stmn1
−1.408402171
9.430733602
204.5829412
2.08827E−46
 3.3097E−44


S100a13
−0.460207609
9.897903663
200.3466085
1.75467E−45
2.75397E−43


Zyx
−0.78157278
9.311171714
198.7702945
3.87423E−45
6.02219E−43


mt-Co1
−0.219039635
12.21547146
198.0155703
5.66095E−45
8.71571E−43


Tnfrsf1b
0.594415005
9.452768175
197.5495441
7.15471E−45
1.09116E−42


Cks1b
−0.902420001
9.26180276
197.452059
7.51393E−45
1.13524E−42


Cdkn1a
0.684828228
9.693082603
197.3870862
 7.7633E−45
1.16205E−42


Rpl36
0.191378672
11.87412411
196.3232522
 1.325E−44
1.96514E−42


Prdx6
0.387419462
10.19719876
195.9655521
1.58592E−44
2.33073E−42


2810417H13Rik
−1.348762706
9.337778098
195.5943825
1.91112E−44
2.78335E−42


Pkp3
−0.590268938
9.709686255
194.7192546
2.96677E−44
4.28222E−42


H2-Q7
0.318794872
10.6210556
194.3215104
 3.6232E−44
5.18343E−42


Rps28
0.239174935
11.70755238
194.1805529
3.88917E−44
5.51512E−42


Myl6
−0.272160511
10.93133884
189.5951424
3.89676E−43
5.47782E−41


Itgb7
−0.467285899
9.956624675
189.2773925
4.57154E−43
6.37099E−41


1700097N02Rik
−0.721214639
9.227389704
187.3734805
1.19032E−42
1.64468E−40


Prkca
0.631509347
9.472730429
185.026078
3.87351E−42
5.30671E−40


Abcb1b
0.705256247
9.297095082
184.288226
5.61288E−42
7.62503E−40


Bcl2l11
0.679389484
9.333331974
183.929455
6.72219E−42
9.05591E−40


Slc3a2
0.401407628
10.08963433
183.7616752
7.31374E−42
 9.7714E−40


Osbpl9
0.664999167
9.306537304
183.4761973
8.44237E−42
1.10959E−39


Lcp1
−0.387042933
10.2911179
183.490149
8.38337E−42
1.10959E−39


S1pr1
−0.798212974
9.290347096
183.128455
 1.0055E−41
1.31088E−39


Sh2d1a
−0.668941826
9.507382786
182.7651867
1.20696E−41
1.56094E−39


Rabac1
0.420182689
9.787494723
182.5076575
1.37378E−41
1.76258E−39


Sec61b
−0.425196971
9.885092925
181.610947
2.15622E−41
2.74469E−39


Riok1
0.638753261
9.379978763
181.4859042
2.29612E−41
2.89993E−39


Gpr132
0.416559375
9.8660454
180.8336852
 3.1871E−41
 3.994E−39


Crip1
−0.493199874
11.66680468
180.0759095
4.66494E−41
5.80103E−39


Rps16
0.16161083
12.35143085
179.5347494
6.12356E−41
7.55676E−39


Abcb1a
0.648799063
9.300398573
178.4612223
1.05052E−40
1.28657E−38


BC021614
−0.744896507
9.270925728
178.3219969
1.12669E−40
1.36948E−38


Orai1
0.43534957
9.884592153
176.58257
2.70161E−40
3.25927E−38


Gabpb1
0.596714389
9.478113973
175.9501956
3.71289E−40
4.44611E−38


Rexo2
−0.610677527
9.465244675
175.0647112
5.79529E−40
6.88873E−38


Hspa8
0.298364729
12.33067999
171.6427177
3.23885E−39
3.82184E−37


Tbc1d10c
−0.609447245
9.522567817
171.179049
4.08936E−39
4.79048E−37


Ap2s1
−0.560849494
9.498112489
171.1596432
4.12946E−39
4.80266E−37


Atp5c1
−0.393590419
9.901816954
170.3699703
6.14273E−39
 7.0931E−37


Chchd2
0.281156025
10.44216726
169.2568613
1.07517E−38
1.23271E−36


Glipr2
−0.62575301
9.484139571
169.1833807
1.11565E−38
1.27011E−36


Ltb
−0.525135472
10.15487923
169.094768
1.16649E−38
1.31871E−36


Apobec3
−0.614418213
9.503277979
168.9346551
1.26431E−38
1.41936E−36


Hsp90ab1
0.358235846
11.19703839
168.5749929
1.51499E−38
1.68906E−36


Traf4
0.618977528
9.359798595
168.1736074
1.85388E−38
2.05273E−36


Gch1
0.58977029
9.459478409
167.9384628
2.08662E−38
2.29471E−36


Rps15a
0.15887194
12.4038352
167.7357859
2.31053E−38
2.52379E−36


Pim1
−0.449599367
10.82518403
166.6702327
3.94877E−38
4.28429E−36


AW112010
−0.356352013
11.38310706
166.0238903
5.46572E−38
5.89059E−36


Arpc5
−0.374716295
10.09994182
165.8699709
5.90568E−38
6.32259E−36


Tmem176b
−0.88387982
9.4480561
164.2381697
1.34194E−37
1.42722E−35


Pde4b
0.463371289
9.65862148
164.1390035
1.41057E−37
1.49041E−35


Cdc42
−0.290733616
10.40483847
164.0282804
1.49136E−37
1.56554E−35


Rbm3
−0.303875972
10.73119655
163.8078342
1.66626E−37
1.73785E−35


Stat4
0.509660197
9.50654617
161.4842906
5.36238E−37
5.55694E−35


Pomp
−0.461350255
9.70146416
160.7695414
7.68272E−37
7.91076E−35


Isg15
0.724401352
9.495169432
160.4188089
9.16525E−37
9.37756E−35


Tspo
−0.399054221
9.918101434
160.304487
9.70783E−37
9.87023E−35


Arf4
0.373788321
9.974865872
159.6926899
1.32066E−36
1.33437E−34


Gm11808
0.354253549
10.17414183
159.250362
1.64982E−36
1.65659E−34


Flna
−0.685998565
9.27108819
159.1706353
1.71734E−36
1.71374E−34


Uba52
0.326559163
10.2399743
158.987408
1.88318E−36
 1.8677E−34


Hsp90aa1
0.484135824
10.76861348
157.8713379
3.30183E−36
3.25472E−34


Adora2a
0.552025884
9.426699157
157.5091965
3.96173E−36
3.88153E−34


Gm9843
0.337819429
10.49171063
156.9213278
5.32526E−36
5.18603E−34


Vim
−0.444021646
10.47382906
156.4739419
6.66963E−36
6.45636E−34


Hspe1
0.476979188
10.27539148
156.3922483
 6.9495E−36
6.68724E−34


Pkm
−0.357373771
10.1621659
155.5786776
1.04649E−35
1.00104E−33


Ccnd2
0.45234154
9.824519901
155.4920344
1.09313E−35
 1.0395E−33


Kpna1
0.56949201
9.374027049
155.1833538
1.27681E−35
1.20707E−33


D16Ertd472e
0.457345281
9.624068057
154.0966474
2.20601E−35
2.07339E−33


S100a10
−0.30141114
10.94016781
154.0320192
2.27893E−35
2.12955E−33


Ccnb2
−0.632375053
9.212365668
153.0418621
 3.7508E−35
 3.4848E−33


Arf5
−0.352340754
9.981775241
152.9596822
3.90917E−35
3.61118E−33


Wdr1
−0.508723478
9.566638472
150.3847378
1.42845E−34
1.31207E−32


Slamf6
−0.73893756
9.319065378
149.892996
1.82957E−34
 1.671E−32


Nfkb2
0.481830243
9.521885906
149.3244526
2.43568E−34
2.21209E−32


Ctla4
0.427747962
10.1530728
149.2551209
2.52217E−34
2.27785E−32


Gm26740
0.475205161
9.65890753
147.7317529
5.42961E−34
 4.8764E−32


Ube2c
−0.767726489
9.233532012
147.2871077
6.79154E−34
6.06586E−32


Ago2
0.552705416
9.333716732
147.1394927
7.31539E−34
6.49784E−32


Birc5
−0.876229377
9.251711307
146.9093125
8.21402E−34
7.25617E−32


Gapdh
−0.299112432
10.56241857
146.8533552
8.44868E−34
 7.4229E−32


Tagln2
−0.374638047
10.29890981
145.9056211
1.36136E−33
1.18961E−31


H2-Q6
0.403745938
9.740233488
145.8383905
1.40822E−33
1.22394E−31


Slc25a4
−0.505941443
9.597149244
145.6070287
1.58216E−33
1.36777E−31


Limd2
−0.388646178
10.08900365
145.4829362
1.68415E−33
1.44819E−31


Eif3h
−0.278504501
10.29703998
144.4345701
2.85483E−33
2.44186E−31


Acadl
0.535803555
9.426500038
143.2243213
 5.2503E−33
4.46718E−31


Set
−0.454430557
9.773657326
143.1546396
5.43776E−33
4.60245E−31


Ifi27l2a
−0.716236939
9.817229705
143.0476155
5.73879E−33
4.83194E−31


Naca
−0.227053893
10.80149233
142.6503305
7.00947E−33
5.87125E−31


Ccr2
0.502477166
9.897669405
142.4515995
7.74707E−33
6.45563E−31


Cox5b
−0.342361485
10.0435119
142.0600531
9.43518E−33
7.82201E−31


Atp5l
−0.258434484
10.47768281
141.8235363
1.06284E−32
8.76623E−31


Crot
0.556863942
9.397231084
141.2860124
1.39316E−32
1.14324E−30


Batf
−0.546937194
9.653590189
140.6727645
1.89713E−32
1.54894E−30


Prelid1
−0.441857874
9.693857441
140.6149759
1.95315E−32
1.58053E−30


Tmem243
0.522419335
9.382999777
140.6127047
1.95538E−32
1.58053E−30


Tnfsf8
−0.746667051
10.01800671
139.9167141
2.77604E−32
2.23271E−30


Hnrnpa3
−0.33187099
10.15611501
139.2100176
3.96249E−32
3.17117E−30


Cd7
−0.955133649
9.49407751
138.7709549
4.94294E−32
3.93634E−30


Dtx4
0.588912666
9.260819691
138.0520211
7.09925E−32
5.62581E−30


H2-Q4
0.389274444
9.753654107
136.5636584
 1.5022E−31
1.18461E−29


Cd53
0.267838459
10.54705558
136.2510731
1.75831E−31
1.37984E−29


Cirbp
0.372879235
9.821591303
136.0340404
1.96139E−31
1.53178E−29


Vcpkmt
0.490218515
9.468573275
135.7031786
2.31703E−31
1.80082E−29


Ms4a6b
−0.363533853
10.19483269
135.0862488
3.16134E−31
2.44527E−29


Rps23
0.136676892
12.485355
134.6595977
3.91917E−31
3.01701E−29


Tnfrsf18
0.363350646
10.06784669
134.0909261
5.21897E−31
3.99858E−29


Erh
−0.424916553
9.741395893
134.0299115
5.38185E−31
4.10392E−29


Ran
−0.43677254
9.801466447
132.078733
1.43801E−30
1.09141E−28


Pnrc1
0.279551131
10.57763129
131.7585909
1.68966E−30
1.27641E−28


Tox2
−0.494429465
9.191330625
130.5732514
3.06992E−30
2.30829E−28


Rpl23a-ps3
0.275124423
10.72027491
130.4319429
3.29643E−30
2.46713E−28


Cytip
0.305917579
10.18851993
130.0553827
3.98502E−30
2.96875E−28


Eomes
−0.808402797
9.215475259
129.9784094
4.14259E−30
3.07198E−28


Gnb1
−0.441806484
9.703176458
129.6601205
4.86309E−30
 3.5898E−28


Calm2
0.281457442
10.41344741
129.5654599
5.10063E−30
3.74803E−28


Cdk6
−0.652717771
9.323625219
128.9918874
6.80961E−30
4.98119E−28


Plscr1
0.538048062
9.521580156
128.9205551
7.05879E−30
 5.1402E−28


Ldha
−0.30771685
10.3562952
128.8545946
7.29731E−30
5.29006E−28


Btg2
0.325367246
10.53756271
128.1980853
1.01582E−29
 7.3311E−28


Lmnb1
0.417613687
9.781595274
127.9843878
1.13129E−29
8.12822E−28


Rgcc
0.688439061
9.563499202
127.9722539
1.13823E−29
8.14188E−28


mt-Co2
−0.195884131
11.38674194
127.8524506
1.20905E−29
8.61038E−28


Rpl37
0.14371841
12.07306348
127.7719313
1.25911E−29
8.92756E−28


Tpt1
0.157950068
11.78349556
127.3775638
 1.5359E−29
1.08425E−27


Gramd3
0.412706804
10.20636682
127.0334653
1.82667E−29
1.28391E−27


Gpx4
0.323281731
10.07618977
126.6694303
2.19444E−29
1.53573E−27


Cdca3
−0.472652508
9.196810536
126.3015826
2.64133E−29
1.84051E−27


Ccr5
0.540398603
9.51436215
125.9629608
3.13276E−29
2.17357E−27


Xist
0.750105813
9.888938449
125.3127903
4.34727E−29
3.00333E−27


Amz2
0.525949285
9.343188021
125.1580219
 4.6999E−29
3.23313E−27


St8sia4
0.546224409
9.30811702
125.1322589
4.76131E−29
 3.2615E−27


Zfp36
−0.811141834
9.294562058
124.0351838
 8.2763E−29
5.64534E−27


Gltp
−0.507531701
9.448093847
122.3124798
 1.972E−28
1.33947E−26


Rps29
0.16387477
12.24471453
121.9208529
2.40233E−28
1.61844E−26


mt-Cytb
−0.234943587
11.07879665
121.9205166
2.40274E−28
1.61844E−26


Igtp
0.504055964
9.509084729
121.2284811
3.40562E−28
2.28445E−26


Tbx21
0.557575631
9.277655891
120.9884633
3.84361E−28
2.56759E−26


Capn2
−0.559140819
9.322209356
120.5648275
4.75861E−28
3.16575E−26


Tnfaip8
0.423063549
9.630282095
120.3926675
5.19002E−28
 3.4386E−26


Cox6b1
−0.278552491
10.15777506
118.9346766
1.08236E−27
 7.1418E−26


Arpc4
−0.35503697
9.810411465
118.1622595
1.59769E−27
1.04993E−25


Ncl
0.289826807
10.07288426
116.7834774
3.20182E−27
2.09557E−25


Anp32b
−0.444708978
9.652821361
116.7595092
3.24075E−27
 2.1125E−25


2700094K13Rik
−0.564948118
9.385390715
116.5920387
3.52629E−27
 2.2894E−25


Mfsd6
0.50695786
9.369441943
116.3646697
3.95464E−27
2.55723E−25


Tuba4a
0.505604749
9.389389134
116.122805
4.46758E−27
 2.8774E−25


Psmb3
−0.320343547
9.906091127
116.0098837
4.72934E−27
3.03391E−25


Gcnt2
0.569564724
9.21801522
115.8092096
5.23294E−27
 3.3437E−25


Bcl2l1
0.52714474
9.376464751
115.7519424
5.38625E−27
3.42812E−25


Rpl23a
0.13563776
12.17564937
115.2767761
6.84457E−27
4.33919E−25


Rilpl2
−0.546494215
9.398901147
115.0842673
7.54234E−27
4.74599E−25


Hcst
0.252834434
10.61089101
115.0835741
7.54497E−27
4.74599E−25


Ass1
−0.51973323
9.534398406
114.7355685
8.99234E−27
 5.6345E−25


Ubb
0.210452543
12.90465659
114.6470029
9.40307E−27
5.86911E−25


Rpl12
0.207576935
10.99249069
113.9508319
 1.3358E−26
8.30559E−25


Ywhah
−0.3943071
9.722022338
113.8003544
1.44112E−26
8.92609E−25


Emp1
0.514205699
9.358540577
113.4343025
 1.7333E−26
1.06949E−24


Hint1
−0.296617099
10.08286375
113.2323232
1.91917E−26
1.17967E−24


Dkkl1
0.504724291
9.308686473
113.1616116
1.98885E−26
1.21787E−24


Tcp11l2
0.490513451
9.433883691
112.7141682
2.49235E−26
1.52043E−24


Xcl1
1.194998958
9.40506854
112.2843688
3.09567E−26
1.88137E−24


Rpl24
−0.148371665
11.77231549
111.9741934
3.61992E−26
2.19174E−24


Antxr2
0.524111919
9.257858404
111.8224562
3.90784E−26
2.35725E−24


Tnfrsf25
−0.601839819
9.258889969
111.8014874
3.94939E−26
2.37345E−24


Timp2
−0.576983903
9.295775851
110.8832755
6.27592E−26
3.75765E−24


Amd1
0.506986556
9.33704939
110.5121875
7.56787E−26
4.51447E−24


Hsd11b1
−0.573712404
9.289649192
109.2285995
1.44609E−25
8.59464E−24


Cyba
−0.255410775
10.4309546
108.8830417
 1.7215E−25
1.01941E−23


Twf2
−0.506092699
9.389135379
108.4415119
2.15105E−25
1.26912E−23


Cldnd1
0.437135874
9.795121381
108.1944154
2.43665E−25
 1.4324E−23


H3f3b
0.176835587
12.3442743
107.9279532
2.78728E−25
1.63258E−23


Sub1
0.223420381
11.1488509
107.9028414
2.82282E−25
1.63562E−23


Nme1
−0.410983186
9.653644082
107.9169334
2.80282E−25
1.63562E−23


Dbi
−0.503923317
9.46225676
107.9081308
 2.8153E−25
1.63562E−23


Mat2a
0.442640021
9.501583097
107.6673044
3.17904E−25
1.82891E−23


Emb
0.3409222
10.25108753
107.6709239
3.17324E−25
1.82891E−23


Itga4
−0.538393532
9.394382328
107.19807
4.02829E−25
2.30927E−23


Tpgs1
−0.547232328
9.260754207
106.3574922
6.15642E−25
3.51678E−23


Eno1
−0.340480149
9.942475304
106.210237
6.63132E−25
3.77472E−23


Sash3
−0.558983887
9.280791065
105.5651388
9.18291E−25
 5.2088E−23


Rpl21
0.141624442
11.76877751
105.5424416
 9.2887E−25
5.25039E−23


Rpl18a
0.115781407
12.84271355
105.3725254
1.01203E−24
5.70054E−23


Bak1
−0.530049389
9.291925002
104.9557381
1.24895E−24
7.01059E−23


Tmpo
−0.551234966
9.399332732
104.4649178
1.60001E−24
8.95012E−23


Fkbp1a
−0.359503623
9.733415831
104.2324114
1.79923E−24
1.00298E−22


Ndfip1
0.349750518
9.658014518
103.9167295
  2.11E−24
1.17218E−22


Rgs1
0.371335135
11.08975907
103.6582181
2.40408E−24
1.33097E−22


Ech1
−0.423155488
9.539595739
103.6369821
2.42999E−24
1.34072E−22


Nop56
0.424122186
9.44999363
103.4998715
2.60411E−24
1.43191E−22


Il22
−1.546604232
9.482887499
103.4238643
2.70596E−24
1.48286E−22


Gnb2
−0.326724769
9.816182555
102.9851985
3.37662E−24
1.84413E−22


Psma4
−0.420490298
9.543577958
102.9024256
3.52068E−24
1.91634E−22


Coq10b
0.407565103
9.509829344
102.7580597
3.78682E−24
2.05429E−22


Kdm6b
−0.564998666
9.740092853
102.2484393
4.89775E−24
2.64806E−22


Def6
−0.512941554
9.346043162
100.9911559
9.23951E−24
4.97886E−22


Rpl9-ps6
0.349639434
9.841114929
100.3147377
1.30006E−23
6.95919E−22


Gpr171
0.366635846
9.722718651
100.3157828
1.29937E−23
6.95919E−22


Rpl9
0.128286541
11.84230049
100.2331707
1.35472E−23
7.22783E−22


Rpl27-ps3
0.364109983
9.836595897
100.0840856
1.46062E−23
7.76726E−22


Srsf5
0.266057713
10.09087953
99.90009247
1.60282E−23
8.49546E−22


Mki67
−0.465243552
9.203073676
99.69938332
1.77376E−23
9.37081E−22


Cisd3
−0.525536963
9.289876433
99.52839188
1.93371E−23
1.01825E−21


Arid5a
0.364870228
9.656742664
99.48865318
 1.9729E−23
1.03552E−21


Fau
0.117665937
12.30167106
99.0301156
2.48691E−23
1.30108E−21


Nr4a3
0.496623394
9.253599057
98.98547036
2.54361E−23
1.32645E−21


Klf6
−0.463656693
9.896878744
98.88672106
2.67366E−23
1.38979E−21


Rpl23
0.143460142
11.70879327
98.81011908
2.77911E−23
1.43997E−21


Cdkn3
−0.295491219
9.177389757
98.76406715
2.84449E−23
1.46914E−21


Taf10
−0.439262723
9.515336126
98.5028028
3.24565E−23
1.67099E−21


Acp5
−0.483724271
9.39691276
98.31170727
3.57446E−23
1.83444E−21


Alyref
−0.512386856
9.471617456
98.26781953
3.65457E−23
1.86961E−21


Mtch1
−0.522764482
9.286913269
97.80966112
4.60595E−23
2.34889E−21


Malat1
0.220170852
14.6684552
97.38689353
5.70222E−23
2.89881E−21


Rps14
0.110659316
12.65498594
97.1959583
6.27947E−23
3.18225E−21


Tk1
−0.352993071
9.186456549
97.00099196
6.92926E−23
3.50058E−21


Rpl36a
0.183239744
11.04535005
96.7894076
7.71075E−23
3.88324E−21


Icos
0.315321976
10.25650888
96.68836511
8.11447E−23
4.07387E−21


Serf2
−0.187728813
10.7068503
96.04038582
1.12564E−22
5.63376E−21


Tnfsf11
0.557938441
9.547078237
95.67026522
1.35703E−22
6.77093E−21


Aprt
−0.395206011
9.637373978
95.66236935
1.36246E−22
6.77707E−21


Lamtor5
−0.44478946
9.410023241
95.65457018
1.36784E−22
6.78295E−21


Sec62
0.310396292
9.756891332
95.09887676
1.81109E−22
8.95356E−21


Glul
0.464844545
9.375643512
94.1625981
2.90641E−22
1.43247E−20


Hmgn2
−0.576602296
9.445404975
94.09059207
3.01408E−22
1.48102E−20


Grap2
0.454216031
9.308784996
94.05858529
3.06322E−22
1.50061E−20


Hspa5
0.244336232
10.97867799
94.03946443
3.09295E−22
1.51059E−20


Gm2a
−0.430040205
9.581841921
93.88699024
3.34063E−22
1.62664E−20


Izumo1r
−0.608712826
9.250980816
93.71023726
3.65267E−22
1.77324E−20


Adrb2
0.535741715
9.281420121
93.6761559
3.71611E−22
1.79864E−20


Traf1
0.282213829
10.10515014
92.36351394
7.21318E−22
3.48084E−20


Ptpn7
−0.519506241
9.307713029
92.22828093
7.72331E−22
3.71593E−20


Crbn
0.358418487
9.708112889
92.04198204
8.48571E−22
4.07062E−20


Calm3
−0.363800232
9.648589796
92.00946041
8.62631E−22
4.12583E−20


Snrpe
−0.308597904
9.827468486
91.71067545
1.00322E−21
 4.7841E−20


Peli1
0.331773787
9.75612779
91.23737361
1.27431E−21
6.05895E−20


Cdkn2d
−0.507234255
9.369237934
91.08746139
 1.3746E−21
6.51665E−20


1500009L16Rik
−0.548390626
9.247085147
91.06913756
1.38739E−21
6.55805E−20


Saraf
0.265182173
10.21648935
91.0409854
1.40727E−21
6.63262E−20


Me2
0.460112182
9.315619916
90.96509981
1.46229E−21
 6.8719E−20


Tnfrsf9
0.580005635
9.402134791
90.77972333
1.60591E−21
7.52495E−20


Ccna2
−0.400426756
9.19384283
90.75730099
1.62421E−21
7.58871E−20


Mrpl42
−0.491601474
9.309100457
90.67135954
1.69631E−21
7.90275E−20


Socs1
0.473388021
9.398189402
89.78506933
 2.6549E−21
1.23331E−19


Nusap1
−0.513197969
9.207259227
89.5987643
2.91706E−21
1.35121E−19


Atp5f1
−0.299068276
9.82227645
89.58192797
2.94199E−21
1.35886E−19


Dut
−0.525005434
9.370492812
89.35609919
3.29774E−21
1.51884E−19


Rpl22l1
−0.210893716
10.87576972
89.25595861
3.46896E−21
1.59316E−19


Oat
0.438985505
9.329297018
89.15554471
3.64959E−21
1.67137E−19


Wtap
−0.440428643
9.407943162
89.1100865
3.73442E−21
1.70539E−19


Arpc5l
−0.465637304
9.354510705
88.86346776
4.23024E−21
1.92637E−19


Reep5
−0.359793383
9.637232149
88.39947996
5.34849E−21
2.42875E−19


Rps18-ps3
0.402507463
9.485009861
88.29003132
5.65276E−21
2.55973E−19


Eif3f
−0.187506949
10.66456064
88.11582239
6.17319E−21
2.78759E−19


Anxa6
−0.329415877
9.7471733
87.93028771
6.78025E−21
3.05319E−19


Rpl36-ps3
0.382762365
9.494055337
87.66475526
7.75439E−21
3.48215E−19


Tob1
0.4322116
9.42000657
87.56689353
8.14771E−21
3.64864E−19


Eif1ax
−0.447944725
9.373714585
87.11118469
1.02589E−20
4.58135E−19


Itpkb
0.388213113
9.50956752
86.97951369
1.09651E−20
4.88325E−19


Rps11
−0.120222506
12.26312327
86.95742035
1.10883E−20
4.92454E−19


Ccr7
−0.827352902
9.273177568
86.88147711
1.15223E−20
 5.1033E−19


Rps13
0.118476361
11.9252863
86.86801277
1.16011E−20
5.12412E−19


Sytl3
0.385802963
9.504493169
85.81774359
1.97308E−20
8.69122E−19


Hnrnpf
−0.218975824
10.40312097
85.6906052
 2.1041E−20
9.24318E−19


Relb
0.381710195
9.473542129
85.55433278
2.25422E−20
 9.8758E−19


Prdx1
−0.30210979
9.945243865
85.47656524
2.34464E−20
1.02442E−18


Hif1a
0.31517707
9.774227368
85.08751446
2.85447E−20
1.24381E−18


Cox5a
−0.258557899
10.08167074
84.9467374
3.06512E−20
1.33201E−18


Rasgrp2
−0.489347096
9.377108103
84.74049136
3.40211E−20
1.47449E−18


Tob2
0.453132367
9.437008471
84.68313645
3.50225E−20
1.51383E−18


Asf1b
−0.504596732
9.223323692
84.66123288
3.54126E−20
1.52661E−18


Id2
0.312337499
10.64556525
84.33429136
4.17805E−20
1.79634E−18
















TABLE 3C







LPL-2 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Lgals1
1.107635326
11.62794788
1745.765645
0
0


Crip1
1.160964893
11.66677342
1329.701702
 3.969E−291
 3.2081E−287


S100a6
1.198020946
10.99644365
1210.536111
 3.1298E−265
 1.6865E−261


S100a10
0.711665053
10.94013071
1098.436026
 7.2245E−241
 2.9198E−237


Lgals3
1.396672722
10.20022841
1079.543841
 9.2247E−237
 2.9825E−233


S100a4
1.527217655
9.866777731
973.9490277
 8.2582E−214
 2.225E−210


Itgb1
1.751523134
9.299279016
928.1234969
 7.5546E−204
 1.7447E−200


Emp3
0.930153302
9.864694656
866.1214647
 2.2739E−190
 4.5949E−187


Actg1
0.557655647
12.09959146
800.9549005
 3.3454E−176
 6.0091E−173


Vim
0.882078214
10.4737473
792.3381022
 2.4998E−174
 4.0412E−171


Ifitm1
3.164079151
9.599747165
776.5403323
 6.8031E−171
 9.9982E−168


Rps27
−0.387759423
13.23483519
632.9819097
 1.1228E−139
 1.5125E−136


Rps29
−0.402671414
12.24470733
625.94336
 3.8116E−138
 4.7399E−135


Itgb7
0.728056874
9.956612648
623.3865772
 1.3715E−137
 1.5837E−134


Ms4a4b
0.643490527
10.75178795
622.8012833
 1.8386E−137
 1.9815E−134


Junb
−0.777993669
11.89087159
602.8382153
 4.0408E−133
 4.0827E−130


Pglyrp1
1.2119906
9.331208685
570.368253
 4.6689E−126
 4.4398E−123


Lsp1
0.607948171
10.3214748
559.4531755
 1.1055E−123
 9.9289E−121


Cd52
0.479542234
11.79358704
526.2289603
 1.8679E−116
 1.5893E−113


Klrd1
1.281868785
9.372635779
515.4102303
 4.2181E−114
 3.4095E−111


Got1
−1.246704373
9.855927617
502.3476321
 2.9321E−111
 2.2571E−108


Odc1
−0.999359158
10.45374948
480.1976985
 1.9352E−106
 1.422E−103


Nkg7
0.635156724
11.21006764
466.4812842
 1.8684E−103
 1.3133E−100


Cd48
0.801758485
9.721230863
465.5348676
 3.0021E−103
 2.0222E−100


Glipr2
0.840279767
9.484133594
428.4566632
3.52206E−95
 2.2775E−92


Anxa1
1.198698478
9.278573422
424.2938572
2.83693E−94
1.76392E−91


Klf2
1.251446468
9.96061809
422.5102224
6.93538E−94
 4.1525E−91


Pycard
0.821577501
9.577165063
416.4397023
1.45343E−92
 8.3915E−90


Rps28
−0.384870366
11.70752993
413.5454065
6.19998E−92
3.45617E−89


AA467197
0.966906994
9.471388865
399.1453036
8.45263E−89
4.55484E−86


Ramp3
−1.423901616
9.937109715
376.5001514
7.19354E−84
3.75131E−81


Rps27rt
−0.541894598
11.16203814
374.50616
 1.9547E−83
9.87488E−81


Fxyd5
0.374291229
10.88895574
373.588429
3.09665E−83
1.51698E−80


S1pr4
0.789331367
9.466032912
359.098318
 4.4251E−80
2.10401E−77


Rgs1
−0.786014575
11.08978155
352.5170907
1.19954E−78
5.54048E−76


Bin2
0.674444277
9.612834003
332.5449837
2.68221E−74
1.20446E−71


Zyx
0.871870874
9.311172942
332.0349778
3.46394E−74
1.51346E−71


Anxa2
0.694314803
9.842643949
325.6200897
8.64484E−73
3.67769E−70


Tnfrsf4
−0.770960782
10.62243251
323.315614
 2.746E−72
1.13825E−69


Ifitm2
0.899150526
10.68445772
319.4990272
1.86219E−71
7.52605E−69


Ctla4
−0.717492
10.15306486
313.1390335
4.52291E−70
1.78335E−67


Malat1
−0.429232236
14.66848179
310.0933732
2.08393E−69
8.02116E−67


Crem
−0.936462251
10.06717199
309.4765776
2.83955E−69
1.06754E−66


Ifitm3
1.07385109
9.717589617
305.0557418
2.60811E−68
9.58243E−66


Myl6
0.319639864
10.93131338
295.8728592
 2.6119E−66
9.38311E−64


Gna15
0.723530518
9.413846926
293.4396749
8.85314E−66
 3.1113E−63


Reep5
0.576970257
9.637214739
287.0003799
2.23954E−64
7.70305E−62


Rpl12
−0.361118726
10.9924655
286.9340944
2.31527E−64
7.79763E−62


S1pr1
0.88219731
9.290345556
285.4522276
4.86969E−64
 1.6066E−61


Arhgdib
0.369730687
10.73181656
282.2713569
2.40234E−63
7.76726E−61


Rpl37a
−0.230463204
12.61563546
281.1880744
 4.1371E−63
1.31138E−60


S100a13
0.477912226
9.89789302
277.2675542
2.95838E−62
9.19714E−60


Sh3bgrl3
0.316794291
11.24486223
275.9719088
5.66773E−62
1.72877E−59


Rpl36a
−0.336268091
11.04533644
275.3234377
7.84748E−62
 2.3493E−59


Hspe1
−0.734968089
10.27537472
273.5809707
1.88136E−61
5.52982E−59


Cd47
0.409603749
10.23585118
273.0362546
2.47277E−61
7.13837E−59


Ly6c2
1.596385353
9.266014145
270.6111246
 8.3506E−61
2.36835E−58


Rac2
0.302952162
11.09602966
268.3984579
2.53491E−60
 7.0654E−58


Rps16
−0.212403538
12.35142328
267.4464731
4.08742E−60
1.11995E−57


Klrc1
0.869453849
9.658428758
264.6488216
1.66425E−59
4.48404E−57


Tspo
0.452765846
9.918102726
261.1004221
9.87762E−59
2.61773E−56


Ptma
−0.368146026
11.28837461
260.25122
1.51271E−58
3.94427E−56


Klrk1
0.967738565
9.564428224
260.2132923
1.54178E−58
3.95627E−56


Ubb
−0.340558743
12.90467053
253.8842203
3.69547E−57
9.33454E−55


Rps15a
−0.209512678
12.40382894
252.2257436
8.49603E−57
2.11303E−54


Selplg
0.412758765
10.21362445
248.0654969
6.85781E−56
1.67975E−53


Coro1a
0.365510663
10.77320156
247.1536687
1.08388E−55
2.61521E−53


Rasgrp2
0.746165592
9.377101403
245.1227903
3.00439E−55
 7.1425E−53


Rplp2
−0.239346191
11.91018134
243.9392817
5.44245E−55
1.27511E−52


Ggt1
0.845090141
9.203353657
240.5208096
3.02793E−54
 6.9928E−52


Ctsd
0.558572919
9.641720936
239.4727209
5.12479E−54
1.16687E−51


Hsp90ab1
−0.478995578
11.19701824
238.7640474
7.31478E−54
1.64237E−51


Prr13
0.385685076
10.23778924
236.1715783
2.68844E−53
 5.9536E−51


Klhl6
0.724094678
9.316899465
233.3735902
1.09557E−52
2.39338E−50


Rps20
−0.30849135
11.06878098
226.7801872
3.00297E−51
 6.4728E−49


Anxa6
0.477668152
9.747152467
226.6718002
3.17095E−51
6.74495E−49


Ms4a6b
0.431526867
10.19485172
224.1053813
1.15062E−50
 2.4157E−48


Epsti1
0.481889636
9.946002487
222.8372549
2.17532E−50
4.50849E−48


Tnfsf11
−0.995325248
9.547066191
222.1985428
2.99803E−50
6.13496E−48


Ccl5
0.805026235
13.31088043
221.9811923
3.34383E−50
6.75704E−48


Vps37b
−0.498283973
10.60463013
221.6741013
3.90145E−50
7.78651E−48


Arl6ip5
0.446676163
9.776818831
218.2461026
2.18253E−49
4.30278E−47


Asb2
−0.823122831
9.480734994
211.5725771
6.23419E−48
1.21424E−45


Tagln2
0.425196214
10.29885571
211.0250542
8.20787E−48
1.57962E−45


Fth1
−0.300407416
11.58475892
209.3862439
 1.8697E−47
3.55594E−45


Rplp1
−0.235120996
11.70338212
208.9022913
2.38428E−47
 4.4819E−45


Prkca
−0.804901317
9.47273378
207.833874
4.07816E−47
7.57788E−45


Gadd45b
−0.794871222
9.727248868
207.396577
5.08014E−47
9.33244E−45


Dusp1
−0.761030155
9.939132795
205.1520683
1.56893E−46
2.84982E−44


Rps24
−0.211580124
12.0059312
198.8559219
3.71107E−45
 6.6659E−43


Rpl29
0.231642848
11.21438856
194.4462645
3.40302E−44
6.04542E−42


Hsp90aa1
−0.610066784
10.76858556
190.5798156
2.37559E−43
4.17432E−41


Gzma
1.156987494
10.72602929
190.2449752
2.81098E−43
4.88628E−41


Socs3
−0.775105706
9.492203988
183.9508242
6.65037E−42
1.14372E−39


Gngt2
−0.76920447
9.363427733
183.8492044
6.99892E−42
1.19099E−39


Ahnak
0.497917205
9.6486335
183.5158121
8.27591E−42
1.39363E−39


Isg15
−0.919606683
9.495169961
182.7671755
1.20575E−41
2.00951E−39


Eif1
−0.215075871
11.85890479
181.8854963
1.87824E−41
3.09833E−39


Arpc1b
0.279591712
10.55364386
181.858684
1.90373E−41
3.10866E−39


Usmg5
−0.411662014
10.06859105
179.6012963
5.92208E−41
9.57363E−39


Arpc5
0.357914994
10.09992322
178.1056272
1.25618E−40
2.01063E−38


Pfn1
0.266033705
12.14558689
176.9357799
2.26201E−40
3.58507E−38


Rps27a
−0.185752928
11.80983865
173.8717911
 1.0558E−39
 1.6571E−37


Ncf4
0.616931601
9.322576992
173.4282403
1.31961E−39
2.05124E−37


Izumo1r
−0.833944275
9.250979762
173.23288
1.45583E−39
2.24143E−37


Ddx5
−0.273154117
11.19917209
171.9221905
 2.8142E−39
4.29191E−37


Tob2
−0.749576508
9.437017288
170.2866433
6.40562E−39
9.67787E−37


Nrp1
0.475718816
9.166737051
169.9443495
7.60889E−39
1.13894E−36


Il21r
−0.505264995
10.19620078
168.9413091
1.26008E−38
1.86885E−36


Fosl2
−0.703183417
9.531613662
167.1288651
3.13532E−38
4.60778E−36


Cnbp
−0.336972315
10.25780833
165.3131087
 7.8147E−38
1.13813E−35


Slc25a5
0.31094711
10.3940621
164.7439998
1.04048E−37
1.50182E−35


Cyba
0.29682531
10.43094576
164.7129212
1.05687E−37
1.51198E−35


Rgs2
−0.683188002
10.05998032
161.9432033
4.25694E−37
6.03664E−35


Abracl
0.369184781
9.935327557
160.800472
 7.5641E−37
1.06332E−34


Fus
−0.414749315
9.899258939
159.1748408
1.71371E−36
2.38827E−34


Rps21
−0.275761051
10.92385795
157.8355226
3.36186E−36
4.64512E−34


Cnn2
0.399519194
9.90288659
157.5798679
3.82334E−36
5.23797E−34


Dgat1
−0.627039178
9.778835893
157.0134201
5.08414E−36
6.90674E−34


AB124611
0.538688322
9.180449702
156.1726476
 7.7614E−36
1.04559E−33


Ctsw
0.407627769
9.94349627
154.5480574
1.75775E−35
2.34842E−33


Rom1
0.565412526
9.185573671
153.2571454
3.36569E−35
4.45982E−33


Wdr89
−0.438648459
10.42635108
151.6029863
7.73744E−35
1.01694E−32


Fos
−1.040226793
9.517179661
151.265106
 9.1716E−35
1.19571E−32


1500009L16Rik
0.743494969
9.247062972
151.0129633
1.04125E−34
1.34663E−32


Rasa3
0.62108061
9.237628541
150.0581948
 1.6836E−34
2.16009E−32


Serpinb6b
0.578341369
9.622263112
148.5069318
3.67553E−34
4.65689E−32


S100a11
0.301724985
10.60261496
148.500602
3.68725E−34
4.65689E−32


Dusp10
−0.723669213
9.475537805
148.3230479
4.03195E−34
5.05275E−32


Furin
−0.608670033
10.38118207
147.4418599
 6.2826E−34
7.81265E−32


Rpl38
−0.196298052
11.67459296
147.2648676
 6.868E−34
8.47542E−32


Lfng
0.600318631
9.38679975
146.3855751
1.06918E−33
1.30942E−31


Cdkn1a
−0.694573024
9.693100492
143.1294135
5.50726E−33
6.69401E−31


Flna
0.610624204
9.27107707
141.7573801
1.09883E−32
1.32565E−30


Ube2s
−0.407475264
10.00303894
140.9661991
1.63657E−32
1.95976E−30


Msn
0.333987136
9.894256294
140.9427275
1.65602E−32
1.96847E−30


Rps9
−0.160448533
11.99541117
140.6491255
1.91985E−32
2.26542E−30


Rps8
−0.188998621
11.59272654
140.2001816
2.40679E−32
2.81944E−30


Tuba1b
−0.648609572
9.730329249
139.675338
 3.1348E−32
3.64584E−30


Hspa8
−0.295280678
12.33066824
139.3532611
3.68674E−32
4.25713E−30


Slc25a4
0.446208668
9.597123846
136.8862867
1.27692E−31
1.45371E−29


mt-Co1
0.180371584
12.21548846
136.8986462
 1.269E−31
1.45371E−29


BC021614
0.604666583
9.270921447
135.1654782
3.03767E−31
3.43406E−29


Trib2
−0.68443991
9.363798856
134.4595166
 4.3347E−31
4.86631E−29


Sdf4
−0.390564968
9.917420235
133.745527
6.21069E−31
6.92427E−29


Adgre5
0.508601548
9.38877853
132.9968145
 9.0557E−31
 1.0027E−28


Rpl23a
−0.155302608
12.17563324
132.7561574
1.02227E−30
1.11663E−28


Hsph1
−0.728156382
9.472375617
132.7619407
 1.0193E−30
1.11663E−28


Saraf
−0.355176401
10.21648742
131.5242654
1.90136E−30
2.06291E−28


Arhgap31
−0.552171788
9.654221563
131.071069
2.38898E−30
2.57469E−28


Hspd1
−0.558182167
9.781137532
130.015877
4.06513E−30
4.35211E−28


Hmha1
0.381765719
9.750126154
129.5912318
5.03483E−30
5.35481E−28


Atp1b3
0.486515092
9.413034296
129.2689007
5.92258E−30
6.25781E−28


Cd27
−0.803947605
9.342803037
126.3516604
2.57551E−29
2.70362E−27


Tnfsf8
−0.737355758
10.01797843
126.0626608
2.97926E−29
3.10727E−27


Il22
−1.756753656
9.482889609
126.0406633
3.01247E−29
3.12177E−27


Ubald2
−0.351497132
10.62004401
124.5294437
6.45147E−29
6.64296E−27


Rpl36
−0.164380166
11.87412221
124.1971999
7.62739E−29
7.80407E−27


Ifi27l2a
−0.68890883
9.81720141
123.5990198
 1.0311E−28
1.04835E−26


Rpl23a-ps3
−0.295698901
10.72022914
123.4369527
1.11886E−28
1.13046E−26


Gas7
0.571971199
9.194248976
121.9870221
2.32353E−28
2.33305E−26


Nccrp1
0.393930301
9.164828209
121.8725845
2.46149E−28
2.45633E−26


Gpx4
−0.351438364
10.07617554
121.6178872
2.79867E−28
2.77567E−26


Rps23
−0.138447821
12.48534445
121.4722896
3.01179E−28
2.96882E−26


Gramd3
0.418596938
10.20637838
121.4465525
3.05111E−28
2.98935E−26


Rps15
−0.172864084
11.49080729
120.486991
4.94903E−28
4.81964E−26


Gzmm
0.434802686
9.16991855
118.6914094
1.22358E−27
1.18446E−25


Icos
−0.390581255
10.25649242
118.6538485
1.24697E−27
1.19992E−25


Dnaja1
−0.411629472
10.76360037
118.4506794
1.38147E−27
1.32147E−25


Plp2
0.532759958
9.268337634
117.7246556
1.99209E−27
1.89436E−25


Cdc42
0.23089803
10.40482074
117.6820088
2.03538E−27
1.92421E−25


Tppp3
0.695346253
9.186033366
117.5848399
2.13758E−27
2.00908E−25


Tnfrsf1b
−0.53842263
9.452770816
117.4706506
2.26426E−27
2.11584E−25


Capn2
0.485018692
9.322203269
114.5742255
9.75458E−27
9.06279E−25


Eif3f
0.203096883
10.66455686
114.1050524
1.23585E−26
1.14164E−24


Lcp1
0.287302962
10.29112703
113.717244
 1.5028E−26
1.38036E−24


Stat1
−0.513852248
9.580220981
113.5655779
1.62226E−26
1.48167E−24


Jun
−0.94325618
9.603506659
113.0395558
2.11513E−26
1.92096E−24


Tmsb4x
0.144182849
14.24924733
112.5416481
2.71893E−26
2.45554E−24


Clic1
0.268803753
10.32562522
112.5094932
2.76339E−26
2.48183E−24


Vasp
0.287636612
10.04115431
112.1944017
3.23938E−26
2.89325E−24


Sema4a
0.512251592
9.198626437
112.0481305
 3.4874E−26
3.09766E−24


Btf3
0.187828928
10.71559571
111.2147299
5.30965E−26
4.69048E−24


Esyt1
0.475445557
9.338053167
110.1227206
9.21083E−26
8.09251E−24


Arpc3
−0.254844539
10.54018788
108.5503449
2.03612E−25
1.77924E−23


Hsd11b1
0.527808948
9.289647124
107.9739699
2.72331E−25
2.36694E−23


Rps25
−0.179054311
11.11875547
107.5235213
3.41824E−25
2.95505E−23


Areg
−1.179794443
9.38613304
107.4853962
3.48464E−25
2.99642E−23


Rap1b
0.265092354
10.1124176
107.3677512
3.69775E−25
3.16285E−23


Tpt1
−0.15517681
11.7834661
107.2473914
3.92927E−25
3.34319E−23


Actr3
0.261765133
10.23426606
107.0671408
 4.3034E−25
3.64235E−23


Tox
−0.523743046
9.202083903
104.462925
1.60162E−24
1.34853E−22


Cd7
0.758734546
9.494093275
104.186839
1.84109E−24
1.54213E−22


Rpl23
−0.156527601
11.70875625
103.6246787
2.44512E−24
2.03752E−22


Supt4a
0.284417019
9.962767148
103.560841
2.52519E−24
2.09345E−22


Gm11808
−0.317351685
10.17411983
101.4055452
7.49537E−24
6.18215E−22


Rpl39
−0.154446809
11.7773745
101.3066649
7.87902E−24
 6.4656E−22


Gna13
−0.357361906
9.985128145
100.8831794
9.75716E−24
7.96638E−22


Phf11b
0.486488786
9.311766492
100.510537
1.17769E−23
9.56709E−22


Eef1a1
−0.130787248
12.38191171
99.99485692
1.52793E−23
1.23503E−21


Hspa1a
−1.119432968
11.00098792
99.97583829
1.54268E−23
1.24074E−21


Ccnd3
0.409152136
9.527402171
99.62411953
1.84247E−23
1.47452E−21


Adam8
0.511454079
9.247167125
99.41606727
2.04655E−23
1.62978E−21


Fosb
−0.690931948
9.410758224
99.12867187
2.36618E−23
1.87508E−21


Prss16
0.453141756
9.187154617
99.03879299
2.47604E−23
1.95257E−21


Fut7
0.243038107
9.160603564
98.82820564
2.75384E−23
 2.1611E−21


Capzb
0.252231093
10.1589729
98.61753077
3.06296E−23
2.39207E−21


2810001G20Rik
0.514611056
9.235596474
98.50063828
 3.2492E−23
2.52532E−21


Tra2b
−0.360766994
9.814709276
98.41122462
3.39927E−23
2.62931E−21


Maf
−0.499169931
9.56864775
98.38318927
3.44774E−23
 2.6541E−21


Dnajc15
0.302461752
9.893147259
98.27310767
3.64482E−23
2.79252E−21


Rpl9
−0.13362575
11.84228944
96.87312552
7.39152E−23
5.63638E−21


Dnajb1
−0.701565277
10.3172835
96.68446985
8.13045E−23
6.17074E−21


Sla
−0.448798408
9.546198944
96.60348318
8.46991E−23
6.39835E−21


Ptprcap
0.315090568
10.04014467
96.37240421
9.51847E−23
 7.157E−21


Nr4a2
−0.567778459
9.521228879
96.12073243
1.08087E−22
8.08951E−21


Gm9843
−0.294369077
10.49166455
95.54204333
1.44784E−22
 1.0786E−20


Laptm5
0.208711783
10.49799071
94.88345685
 2.0193E−22
1.49743E−20


Snrpg
−0.264157695
10.10181353
94.14112586
2.93811E−22
2.16883E−20


Ass1
0.437532946
9.53437863
92.9075629
5.47947E−22
4.02642E−20


ler5l
−0.591031741
9.223274756
92.85145529
5.63704E−22
4.12345E−20


Birc5
−0.774093032
9.251668784
92.70648319
6.06546E−22
4.41685E−20


Rpl21
−0.141074021
11.76876712
92.34010486
7.29901E−22
5.29129E−20


Lmnb1
−0.395473345
9.781576618
92.00566036
8.64289E−22
6.23754E−20


Qrfp
0.327357379
9.165807799
91.69725749
1.01005E−21
7.25708E−20


Eno1
0.29946273
9.942452612
91.61301618
1.05397E−21
7.53918E−20


Ppp1ca
0.233359723
10.29808235
91.22780891
1.28048E−21
9.11905E−20


Gm10073
−0.394855462
9.699374848
90.63658937
1.72638E−21
1.22407E−19


Itpkb
−0.452002805
9.509585234
90.53161196
1.82045E−21
1.28513E−19


Tmem176a
−0.709693164
9.404482276
90.2402785
2.10924E−21
1.48252E−19


Mpnd
0.436149431
9.307880167
90.19537586
2.15766E−21
1.50999E−19


Rab8a
0.368294453
9.516531936
89.88306722
 2.5266E−21
1.76056E−19


Mt1
0.685595236
9.253327294
89.15305586
3.65418E−21
2.53534E−19


Capg
0.383533992
9.809408711
88.6700908
4.66465E−21
 3.2226E−19


Ikzf2
−0.697619136
9.29885187
88.40616184
5.33045E−21
 3.6669E−19


Hrh4
0.220443917
9.160771464
88.04349384
6.40309E−21
4.38612E−19


Eif5
−0.335801311
9.823445443
87.78758948
7.28748E−21
4.97086E−19


Rpl41
−0.105943424
12.79526034
87.62321264
7.91898E−21
5.37892E−19


Degs1
0.387396398
9.418897111
87.48336602
8.49916E−21
5.74884E−19


Ccna2
−0.40044653
9.193824398
87.40535243
8.84109E−21
5.95521E−19


Il4ra
−0.451028003
9.499550436
86.23410607
1.59847E−20
1.07223E−18


Kcnab2
0.447184668
9.290281332
85.60058808
 2.2021E−20
1.47104E−18


Cdkn2d
0.465467752
9.369239164
85.53454873
2.27688E−20
1.51474E−18


Rps12-ps3
−0.339355757
9.91463743
85.02653826
2.94387E−20
1.95044E−18


Dok2
0.39150937
9.437395362
84.64612001
3.56843E−20
2.35458E−18


Ecm1
−0.527046667
9.213869135
84.63123432
 3.5954E−20
2.36273E−18


Srsf7
−0.369743626
9.589293129
84.41319337
 4.0146E−20
2.62753E−18


Gnai2
0.258354443
10.17425826
84.02128898
4.89475E−20
3.19067E−18


Atp5l
0.187626855
10.47767657
82.95184884
8.40767E−20
5.45857E−18


2810474O19Rik
0.414915888
9.518034833
82.51633462
 1.048E−19
6.77682E−18


Tmem176b
−0.636118826
9.448063427
82.22323647
1.21552E−19
7.82875E−18


Cenpa
−0.530464482
9.394708498
80.8065773
2.48928E−19
1.59689E−17


Rpl6l
−0.255942445
10.20631876
80.66181687
2.67848E−19
1.70474E−17


Rplp0
0.119720189
12.38788281
80.66592463
2.67292E−19
1.70474E−17


Srsf2
−0.318215702
9.857765406
80.54991993
2.83453E−19
1.79698E−17


Il1r2
−0.709588642
9.25672179
80.41166541
3.03995E−19
1.91968E−17


Cox4i1
0.165502192
10.68635697
79.34468754
5.21663E−19
 3.2814E−17


Sp100
0.35419291
9.553598448
79.04472727
6.07196E−19
3.80462E−17


Coq10b
−0.402784111
9.509847044
78.97265199
6.29757E−19
3.93075E−17


Lcn4
0.452058809
9.193732712
78.58412421
 7.6663E−19
4.76667E−17


Penk
−0.97476906
9.250330203
78.56769485
7.73033E−19
4.78807E−17


Rps17
−0.207724729
10.61521551
77.30519082
1.46481E−18
9.03819E−17


Npc2
0.258897774
9.848502166
77.27191156
 1.4897E−18
9.15682E−17


Kpna1
−0.465763262
9.374034121
77.23584317
1.51715E−18
9.29025E−17


Klrc2
0.494282599
9.283377565
77.02917358
1.68451E−18
1.02762E−16


1810058124Rik
0.350718585
9.463204041
76.79034685
1.90105E−18
1.15535E−16


Tubb5
−0.402918211
10.00329454
76.77948586
1.91153E−18
1.15737E−16


Runx2
0.418744898
9.311867377
76.7116709
1.97831E−18
1.19333E−16


Hspa1b
−0.811543031
9.330502334
76.31282443
2.42106E−18
1.45498E−16


Pld3
0.396449863
9.363194614
76.05243089
2.76232E−18
1.65391E−16


2810417H13Rik
−1.011187289
9.337691412
75.408969
3.82648E−18
2.28261E−16


Hist1h1c
0.520548203
9.543347573
75.2055756
4.24168E−18
2.52099E−16


Abi3
−0.513763069
9.334628841
74.69953195
5.48091E−18
3.24558E−16


Maff
−0.542704954
9.305194699
74.66275934
5.58396E−18
3.29453E−16


Eprs
−0.467694903
9.384361092
74.62296026
5.69767E−18
 3.3494E−16


Plec
0.418445279
9.207830137
74.5132662
6.02322E−18
3.52795E−16


Ctsa
0.36742707
9.447076929
74.12724047
7.32407E−18
 4.2744E−16


Uba52
−0.247091632
10.23997211
73.81613397
8.57429E−18
4.98604E−16


Xist
−0.668090773
9.888840859
73.76865447
8.78303E−18
5.08912E−16


Stmn1
−0.902189526
9.430632462
73.4820959
1.01553E−17
5.86324E−16


Tmsb10
0.127806456
12.94248487
73.30106466
1.11308E−17
6.40357E−16


Rps13
−0.114822052
11.92527065
72.93365805
1.34082E−17
7.68641E−16


Hmgn1
−0.472844497
9.24964203
72.65748184
1.54221E−17
8.80968E−16


Top2a
−0.571920918
9.285394761
72.45227309
1.71121E−17
9.74063E−16


Spc24
−0.4090324
9.204180171
72.24512376
 1.9006E−17
1.07807E−15


Ppp1r15a
−0.411070109
9.595245048
72.1100221
2.03527E−17
1.15043E−15


Eomes
−0.680093092
9.215483506
71.67702638
2.53467E−17
1.42771E−15


Swap70
0.410801492
9.194641096
71.595587
2.64147E−17
1.48271E−15


Itga4
0.403875994
9.394391702
71.57584864
2.66802E−17
1.49243E−15


Anp32e
−0.379405088
9.516990745
70.78954069
3.97439E−17
2.21551E−15


Arl2bp
0.321268348
9.473272776
70.77467715
4.00444E−17
 2.2246E−15


Sike1
0.404053142
9.285336783
70.63030965
4.30847E−17
 2.3853E−15


Myo1f
0.413029505
9.304626444
70.51398558
4.57015E−17
2.52154E−15


Fxyd4
0.216164291
9.161845803
70.34300404
4.98393E−17
2.74048E−15


Insig1
−0.468471973
9.373382406
70.3189397
 5.0451E−17
2.76471E−15


Anxa5
0.335340423
9.456501432
70.29264776
5.11279E−17
2.79234E−15


Rps12
−0.189372327
10.77087646
69.76259892
6.68892E−17
3.64085E−15


Arpc2
0.155543095
10.79500611
69.53607194
7.50297E−17
4.07024E−15


Pnrc1
−0.22302859
10.57767668
69.46707965
7.77006E−17
4.20103E−15


Ppib
0.233842294
9.881020252
69.34980439
8.24608E−17
4.44354E−15


Gm9493
−0.228613016
10.33361801
69.2113078
8.84594E−17
4.75095E−15


Dpcd
0.422954441
9.248387156
69.18710349
8.95517E−17
4.79369E−15


Rpl24
0.115597877
11.77230384
69.10660292
9.32825E−17
4.97692E−15


Pkp3
0.322991067
9.70969078
69.06988323
9.50356E−17
5.05377E−15


Crip2
0.493033563
9.219720142
68.71993548
1.13488E−16
6.01523E−15


Rps6
−0.104903549
12.20844385
68.69896404
1.14701E−16
6.05967E−15


Cox5a
0.222688552
10.08163797
68.41076629
1.32751E−16
6.99039E−15


Kdm6b
−0.473433547
9.740181133
68.2056575
1.47303E−16
7.73147E−15


Rbm3
0.190550874
10.73115847
67.86636293
1.74961E−16
9.15344E−15


Rpl6
−0.112569061
11.76088309
67.73571974
1.86946E−16
9.74893E−15


Arpc4
0.248366607
9.810389381
67.10469229
2.57465E−16
1.33832E−14


Rpl13
−0.102585652
12.63773605
66.84961241
 2.9303E−16
1.51346E−14


D8Ertd738e
−0.24018408
10.02747279
66.85109585
2.92809E−16
1.51346E−14


Hmgn2
−0.499593273
9.445371749
66.69834967
 3.164E−16
1.62896E−14


Atox1
0.27625198
9.640004593
66.58567045
3.35013E−16
1.71931E−14


Eef2
0.127179582
11.29644286
66.52871607
3.44833E−16
1.76411E−14


Nr4a3
−0.449594613
9.253600396
66.40569813
 3.6704E−16
1.87179E−14


H2afx
−0.484140494
9.351631242
66.38946902
3.70074E−16
1.88133E−14


Rcbtb2
−0.478710507
9.398952659
66.37266476
3.73242E−16
1.89149E−14


Il17a
−0.932121997
9.237217593
66.09431516
4.29854E−16
2.17157E−14


Tuba4a
−0.427821736
9.389392328
66.08179574
4.32593E−16
 2.1786E−14


Fau
−0.101663836
12.30166869
65.56169951
5.63228E−16
2.82768E−14


Paxbp1
−0.443740412
9.251233688
65.53032342
5.72266E−16
2.85533E−14


Rpl5
−0.176646222
10.56771244
65.53343568
5.71363E−16
2.85533E−14


Rrm2
−0.60210116
9.247674435
65.35593265
6.25214E−16
3.10991E−14


Abcb1a
−0.448389508
9.300396921
65.34292109
6.29356E−16
3.12091E−14


Pim3
−0.482845753
9.328422325
65.07244979
7.21944E−16
 3.5691E−14


Spef2
0.337654887
9.175320605
65.03415325
7.36111E−16
3.62804E−14


Car5b
0.345768026
9.17782806
64.90035524
7.87829E−16
3.87114E−14


Xrn2
0.37261421
9.343045417
64.8757557
7.97726E−16
3.90789E−14


Ech1
0.305307325
9.539590664
64.52484105
 9.5323E−16
4.65556E−14


Rap1gap2
0.247182525
9.165395658
64.43601206
9.97188E−16
4.85558E−14


Tox2
−0.366384133
9.191330824
64.11910587
 1.1712E−15
5.68578E−14


Tnfaip8l2
0.393193127
9.325796745
63.9932113
1.24849E−15
6.04283E−14


Nt5c
0.321207331
9.46177492
63.91994481
1.29579E−15
6.25306E−14


Rasgrp1
−0.390344872
9.487650699
63.86570537
1.33196E−15
6.40848E−14


Prelid1
0.277620155
9.693827343
63.70800001
1.44297E−15
6.92199E−14


Rpl13a
0.093506977
13.1315227
63.41756016
1.67221E−15
 7.9979E−14


Cks1b
−0.54776796
9.261766706
63.35897481
1.72269E−15
8.21503E−14


Mmd
−0.493783446
9.302850291
63.28725567
1.78656E−15
8.49459E−14


Serpini1
0.297936677
9.172144254
63.1533642
1.91223E−15
9.06541E−14


Rps18-ps3
−0.383942395
9.484983983
63.13228605
 1.9328E−15
9.13615E−14


Atp8b4
0.282378055
9.170105411
62.70317375
2.40328E−15
1.13269E−13


Chchd2
−0.185649555
10.44214805
62.67240577
2.44112E−15
1.14718E−13


Rpl22
−0.161149578
10.60718396
62.52082164
2.63643E−15
1.23538E−13


Madd
0.355724386
9.387289733
62.16934741
3.15155E−15
1.47249E−13


Spc25
−0.265138721
9.180366242
62.11597042
3.23815E−15
1.50858E−13


Apobec3
0.340744453
9.503283445
61.75805314
 3.8836E−15
1.80409E−13


Nmrk1
−0.43682095
9.470654245
61.62438468
4.15639E−15
1.92528E−13


Ltb
0.299299727
10.15492701
61.50031252
4.42673E−15
2.04464E−13


Itgb2
0.302934438
9.575070658
61.4814308
4.46938E−15
2.05846E−13


Rgs19
0.371295223
9.28716881
61.40647112
4.64282E−15
2.13227E−13


Chchd10
−0.473427777
9.239735277
61.29318067
4.91781E−15
2.25216E−13


Arhgap15
0.327112956
9.436551627
60.90418079
5.99215E−15
2.73641E−13


5430427O19Rik
0.372356642
9.195518327
60.83083196
6.21962E−15
2.83229E−13


1110008F13Rik
0.315751896
9.430011424
60.72906256
 6.5496E−15
2.97418E−13


Adora2a
−0.392567249
9.426697678
60.21879694
8.48778E−15
3.84351E−13


Cbx3
−0.405488348
9.517985802
60.17684028
8.67064E−15
3.91535E−13


Snx10
0.373362566
9.204288337
60.06212372
9.19101E−15
4.13877E−13


Ccr4
−0.421655714
9.227421818
59.72211968
1.09242E−14
4.90556E−13


Cxcl10
−0.664443182
9.358371286
59.64847266
1.13407E−14
5.07851E−13


Cfl1
0.149724783
11.11290366
59.32651689
1.33565E−14
5.96252E−13


Fam65b
0.396364559
9.256723776
59.32179213
1.33886E−14
5.96252E−13


Kxd1
0.3361848
9.397333347
59.2482617
1.38983E−14
6.17253E−13


Nusap1
−0.426549788
9.207238975
59.13228173
1.47421E−14
6.52933E−13


P2ry14
0.347177821
9.17900749
59.03492232
1.54898E−14
6.84177E−13


Oat
−0.395947403
9.329291217
58.93175541
1.63236E−14
7.19041E−13


Flt3l
0.35959273
9.333363234
58.9039048
1.65563E−14
7.27309E−13


Fmnl1
0.350065739
9.349669898
58.68899791
1.84671E−14
 8.0905E−13


Morf412
−0.364938214
9.397534901
58.42868198
2.10795E−14
9.21005E−13


Slc25a24
0.377308788
9.218974536
58.36398837
2.17842E−14
9.49228E−13


Rpl14
−0.107475124
11.87708218
58.29747299
2.25333E−14
9.79231E−13


Faah
0.370597532
9.275976683
58.27112054
2.28372E−14
9.89775E−13


Cotl1
0.197250984
10.46134647
58.24188048
2.31792E−14
9.99238E−13


Tmem71
0.38204988
9.273813725
58.24380723
2.31565E−14
9.99238E−13


Plek
0.43842105
9.215818477
57.95124621
2.68695E−14
1.15525E−12


Fam110a
−0.37843848
9.494240477
57.91214141
 2.7409E−14
1.17532E−12


Calm2
−0.204357886
10.41345274
57.66217283
3.11231E−14
1.33105E−12


Cdc20
−0.352635513
9.190015265
57.57131431
3.25945E−14
 1.3903E−12


Rilpl2
0.353546322
9.398891472
57.47613338
3.42105E−14
1.45539E−12


Nucks1
−0.385021534
9.378610594
57.24063171
3.85622E−14
1.63621E−12


Traf4
−0.412707476
9.35979853
57.1752643
3.98654E−14
1.68708E−12


Myo1g
0.326411976
9.439455324
56.91402368
4.55288E−14
1.92172E−12


PISD
−0.424075103
9.326147814
56.80816092
4.80468E−14
2.02272E−12


Bbc3
0.390523027
9.210384865
56.78266578
4.86738E−14
2.04379E−12


Mki67
−0.367343453
9.203057109
56.75183508
4.94429E−14
2.07071E−12


1700025G04Rik
0.355444841
9.18123029
56.74235589
4.96818E−14
2.07534E−12


Phlda1
−0.491778784
9.440764624
56.55498898
5.46486E−14
2.27693E−12


Tmem160
0.265315817
9.59150512
56.52865987
5.53852E−14
2.30169E−12


Arf5
0.198635135
9.981768048
56.30803437
6.19617E−14
2.56839E−12


Trpv2
0.372377047
9.250925444
56.10050974
6.88593E−14
 2.847E−12


Usp3
0.355354175
9.292631844
56.06888598
6.99758E−14
2.88579E−12


Pqlc3
0.362365955
9.234748342
56.01745486
7.18305E−14
2.95474E−12


Rpl9-ps6
−0.290907311
9.841070067
55.92224168
7.53948E−14
3.09348E−12


Gabpb1
−0.386813549
9.478096364
55.7462451
8.24556E−14
3.37463E−12


Rpl37
−0.100831831
12.07305382
55.51209471
9.28858E−14
 3.7919E−12


Ptprc
0.203113685
10.11524395
55.28566724
1.04226E−13
4.24412E−12


Tmem234
0.252630089
9.671898221
55.08446668
 1.1546E−13
4.68976E−12


Tesc
−0.34262081
9.483468613
55.07619352
1.15947E−13
4.69773E−12


Xcl1
−0.961147086
9.405065931
55.04662835
1.17704E−13
4.75701E−12


Lag3
−0.642931722
9.272156156
55.01140439
1.19832E−13
4.83095E−12


Uqcrfs1
0.229745717
9.714864078
54.99578919
1.20788E−13
4.85737E−12


Tktl1
0.186029244
9.161740461
54.91081279
1.26125E−13
 5.0594E−12


Edf1
0.203844061
9.905022216
54.87068451
1.28727E−13
5.15099E−12


Cirbp
−0.263662128
9.821626437
54.83975146
1.30769E−13
5.21978E−12


Ska1
−0.153998658
9.167697937
54.81765797
1.32247E−13
5.26578E−12


Cdc42se1
0.329661747
9.377124053
54.67523687
1.42187E−13
5.64764E−12


Asf1b
−0.438345195
9.223299882
54.65077324
1.43968E−13
5.70437E−12


Hmgb1
−0.219889837
10.29714889
54.58969676
1.48512E−13
5.87005E−12


Hic1
−0.432264919
9.270363669
54.4810714
1.56952E−13
6.18852E−12


Sept11
0.356045397
9.343747121
54.27766493
1.74069E−13
6.84672E−12


Tprgl
0.251967719
9.655126678
54.16606559
1.84241E−13
7.22924E−12


Nfatc2
−0.402648226
9.26546375
54.15455217
1.85324E−13
7.25411E−12


Gyg
0.370089737
9.256694676
54.09174115
1.91344E−13
7.47165E−12


H2-K1
−0.13757215
11.61002041
53.98001915
2.02539E−13
7.88974E−12


Isy1
−0.370234123
9.388840432
53.94586091
2.06091E−13
 8.0088E−12


Cenpe
−0.220150784
9.175332099
53.84735181
2.16687E−13
8.38029E−12


Fryl
−0.393078983
9.288378553
53.84761229
2.16658E−13
8.38029E−12


Tacc3
−0.302069013
9.190084756
53.74794908
2.27932E−13
8.79415E−12


Dusp4
−0.416920504
9.244696816
53.55668266
2.51238E−13
9.67028E−12


Tpm4
0.30198206
9.580032755
53.4530001
2.64854E−13
1.01701E−11


Ccdc12
0.24770037
9.642269047
53.43241053
2.67645E−13
1.02529E−11


Stk11
−0.342997764
9.400849509
53.3637069
2.77171E−13
1.05928E−11


Acp5
0.327797466
9.39691335
53.27003737
2.90707E−13
1.10839E−11


Serf2
0.134205382
10.706856
53.12999948
3.12188E−13
1.18749E−11


Nr3c1
−0.376848168
9.448729303
52.68065901
3.92437E−13
1.48923E−11


Cdca8
−0.387769623
9.207959893
52.53102797
4.23504E−13
1.60337E−11


Srrm2
−0.257041817
9.807993986
52.48496978
4.33554E−13
1.63758E−11


Prkcq
0.358224651
9.276198391
52.33872288
4.67073E−13
1.76007E−11


Ccl4
−1.176767063
9.567226392
52.26773318
4.84267E−13
1.82062E−11


Smc2
−0.437413231
9.240676881
52.25511877
4.87387E−13
 1.8281E−11


Kcnn4
0.360084555
9.328517363
52.18835536
5.04243E−13
1.88694E−11


Icam1
0.396186315
9.404345015
51.59667848
6.81568E−13
2.54463E−11


Tpgs1
0.358707501
9.260754154
51.49756628
7.16859E−13
2.67022E−11


Lck
0.169753726
10.31649673
51.26743412
8.06017E−13
2.99542E−11


Riok1
−0.390179495
9.379968099
51.08907685
8.82681E−13
3.25786E−11


Mapkapk3
0.323418904
9.378101749
51.09610669
8.79526E−13
3.25786E−11


Dnajb2
−0.356805427
9.204584167
51.09030293
 8.8213E−13
3.25786E−11


Rrm1
−0.36213335
9.219702428
51.03600203
9.06873E−13
3.33952E−11


Ckb
−0.422149772
9.335719986
50.72744307
1.06125E−12
3.89914E−11


Rpl13-ps3
−0.279124517
9.66187407
50.69891137
1.07679E−12
3.94726E−11


Lin54
−0.392624993
9.319364611
50.60318457
1.13061E−12
4.13518E−11


Aurkb
−0.208001106
9.176325027
50.50706228
1.18737E−12
4.33295E−11


Fam71b
0.31531926
9.185043177
50.47467455
1.20713E−12
4.39513E−11


Fam188a
0.352368275
9.234514724
50.44674626
1.22443E−12
4.44811E−11


Cyb5r4
0.316676256
9.336417497
50.28053448
1.33265E−12
 4.8304E−11


Rnf138
0.269807224
9.608877256
50.16919159
1.41045E−12
5.10097E−11


H2-Q4
−0.265803125
9.753674988
50.11945341
1.44666E−12
5.22024E−11


Gpr171
0.266612793
9.722723261
50.08308592
1.47372E−12
5.30604E−11


mt-Nd1
−0.157466526
11.14928249
49.66729327
1.82157E−12
 6.5439E−11


Arhgap30
0.318944329
9.36964608
49.49433071
1.98946E−12
7.13117E−11


Ranbp1
−0.295883166
9.626989183
49.47831386
2.00577E−12
7.17194E−11


Ube2d3
0.142474457
10.46165668
49.47446563
2.00971E−12
7.17194E−11


Gng2
0.272653394
9.504051907
49.4405448
2.04476E−12
7.28096E−11


Gm7676
0.177214754
9.1626667
49.12506242
2.40152E−12
8.53253E−11


Rps18
−0.093749751
12.47336152
49.06724846
2.47336E−12
8.76848E−11


Atp5c1
0.195509129
9.901795293
48.70713718
2.97183E−12
1.05126E−10


Rpl31
−0.139099182
10.87169602
48.69410038
2.99165E−12
1.05596E−10


Tnfaip3
−0.241621431
10.12478557
48.62414786
3.10028E−12
1.09192E−10


Mrpl52
−0.256915947
9.675785023
48.59779994
3.14222E−12
1.10428E−10


Csrnp1
−0.361872414
9.467384752
48.40889259
3.45996E−12
1.21331E−10


Nudc
−0.299772679
9.486198177
48.36831434
 3.5323E−12
 1.236E−10


Gdi2
−0.219013875
9.887687816
48.28408552
3.68733E−12
1.28468E−10


Hnrnpab
−0.306971441
9.483082447
48.28732967
3.68123E−12
1.28468E−10


H2afz
−0.227597078
10.76601923
48.17724714
 3.8938E−12
 1.3537E−10


Lef1
0.357453344
9.289398985
48.07662452
4.09884E−12
1.42193E−10


Sgip1
−0.382056564
9.193478703
47.83666323
4.63248E−12
1.60361E−10


Wnk1
−0.291417518
9.627909802
47.80634854
4.70466E−12
1.62512E−10


Aldoa
0.180711042
10.23632336
47.80033381
4.71912E−12
1.62664E−10


Dusp 14
−0.452661472
9.24162358
47.66873348
5.04677E−12
1.73587E−10


Rpl27-ps3
−0.279625551
9.836541137
47.62586986
5.15833E−12
1.77048E−10


Sema4d
0.313025469
9.35787998
47.5753698
5.29293E−12
1.81283E−10


Nfkbid
−0.465977677
9.347258824
47.55442849
5.34978E−12
1.82842E−10


Ccr7
−0.653811338
9.273164068
47.46702965
5.59369E−12
1.90775E−10


Napsa
0.299633138
9.173963637
47.45450146
5.62955E−12
1.91594E−10


Mt2
0.405205255
9.179003522
47.44257025
5.66392E−12
1.92359E−10


Impdh2
−0.328858199
9.377823225
47.41545958
 5.7428E−12
1.94629E−10


Tpx2
−0.235310258
9.180975529
47.31848587
6.03405E−12
2.04072E−10


D930028M14Rik
0.221228249
9.165073917
47.30826359
 6.0656E−12
2.04711E−10


Shcbp1
−0.186670641
9.173032321
47.12435823
6.66226E−12
2.24379E−10


Snx5
0.285118196
9.443629607
46.87702366
7.55837E−12
 2.5403E−10


Rnf13
0.334006595
9.270089812
46.83603919
 7.7181E−12
 2.5886E−10


Zfp36l1
−0.354382619
9.536461336
46.67959216
 8.3595E−12
2.79792E−10


Mad2l1
−0.336041583
9.208096533
46.66245921
8.43291E−12
2.81666E−10


Gm8369
0.245202324
9.924470839
46.62050658
8.61539E−12
2.87168E−10


Itgb1bp1
0.312257232
9.308749164
46.50417327
9.14235E−12
3.04106E−10


Npm3
0.254196025
9.590225344
46.44713082
9.41241E−12
3.11805E−10


Slamf7
0.355858539
9.281091881
46.4475631
9.41033E−12
3.11805E−10


Nop10
−0.247091186
9.680893727
46.36563341
9.81215E−12
3.24383E−10


IlZrb
0.250143282
9.646387369
46.35369914
 9.8721E−12
3.25699E−10


St13
−0.295016503
9.483628577
46.29117192
1.01922E−11
3.35575E−10


Lamb3
0.352261752
9.282524225
46.10335197
1.12176E−11
3.68586E−10


4930503L19Rik
−0.366113571
9.217222488
46.0856953
1.13192E−11
3.71168E−10


Psmb3
0.188881553
9.906083726
46.05925169
 1.1473E−11
3.75451E−10


Itm2c
−0.297908775
9.518082662
45.91218367
1.23674E−11
4.03903E−10


Dynll2
−0.337577901
9.353846602
45.64014248
1.42099E−11
4.63141E−10


Ppp3ca
0.310612578
9.326663671
45.56895099
1.47359E−11
4.79317E−10


Pdcd10
0.238398558
9.559474431
45.50441543
1.52295E−11
4.94378E−10


Hnrnpa1
−0.26197532
9.626210649
45.43016426
1.58179E−11
5.12451E−10


Cxcr6
0.246872073
10.38993842
45.24422742
1.73932E−11
5.62358E−10


Ckap2l
−0.110672662
9.164094745
45.23933167
1.74368E−11
5.62641E−10


Ndufa5
−0.282769786
9.479890673
44.84834027
2.12901E−11
 6.8561E−10


Pbk
−0.121046883
9.166098176
44.70325909
2.29275E−11
7.36872E−10


Slc3a2
−0.220945351
10.08964541
44.59582917
2.42207E−11
7.76889E−10


Rbms1
0.285512041
9.408009945
44.5829661
2.43804E−11
7.80461E−10


Tbc1d10c
0.280613085
9.522585953
44.55291444
2.47575E−11
7.90967E−10


Tiparp
−0.383475799
9.253515787
44.52403539
2.51254E−11
8.01137E−10


Ablim1
0.286261251
9.407304211
44.49848449
2.54554E−11
8.10064E−10


Ccnb1
−0.246088895
9.183063921
44.26867125
2.86261E−11
9.09174E−10


Fyb
−0.19056904
10.08185682
44.23904901
2.90626E−11
9.21226E−10


Smco4
−0.348268101
9.324729592
44.19116783
2.97822E−11
 9.4219E−10


Nhp2l1
−0.22781492
9.714965176
43.83830396
3.56656E−11
1.12611E−09


Ncl
−0.191524875
10.07286917
43.70541544
3.81714E−11
1.20288E−09


Cldnd1
−0.308788378
9.795081241
43.55524172
4.12159E−11
 1.2963E−09


Marcksl1
−0.412529974
9.352502046
43.54726008
4.13843E−11
1.29907E−09


Hist1h2ap
−0.268260711
9.186664241
43.4233744
 4.4089E−11
1.38128E−09


Avl9
−0.326052978
9.389562788
43.36184802
4.54973E−11
1.42265E−09


Itgav
−0.360644343
9.245488736
43.33825691
4.60492E−11
1.43712E−09


Hk2
−0.407653809
9.291524998
43.16055459
5.04271E−11
1.57072E−09


AW011738
−0.339602901
9.202092298
43.07369562
5.27163E−11
1.63887E−09


Ppp1cc
−0.199608403
10.14033253
42.81442413
6.01867E−11
1.86752E−09


Bpnt1
−0.336240301
9.20504925
42.69801734
 6.3877E−11
1.97823E−09


Mvb12a
0.294858646
9.323824234
42.65192056
6.54002E−11
2.02153E−09


Eif3h
0.142723574
10.29701565
42.48500485
7.12262E−11
2.19741E−09


Psmb1
0.150510975
10.1666932
42.38821715
7.48396E−11
2.30449E−09


Acot7
0.241728025
9.577204572
42.3784288
 7.5215E−11
2.31165E−09


Bak1
0.314497757
9.291916907
42.22934344
8.11729E−11
2.49002E−09


Grap
0.253931168
9.547624225
42.1727058
8.35581E−11
2.55833E−09


Tpst2
0.257626354
9.502673289
42.15008125
8.45304E−11
2.58321E−09


Nuf2
−0.124493218
9.166373674
42.01178275
9.07251E−11
2.76729E−09


Card19
0.31293595
9.298133437
42.00070748
9.12404E−11
2.77776E−09


Nop56
−0.297251616
9.449988788
41.996255
9.14484E−11
2.77886E−09


Pdlim1
0.34171296
9.286551213
41.96937305
9.27143E−11
2.81204E−09


St3gal4
0.317411314
9.222969771
41.85826443
9.81351E−11
2.97088E−09


Fcgrt
0.184065277
9.164513649
41.8039417
 1.009E−10
3.04887E−09


Msrb1
0.314774706
9.280628983
41.77610517
1.02347E−10
3.08682E−09


Rasgrp4
−0.295228004
9.196046455
41.7685978
 1.0274E−10
3.09292E−09


AI467606
0.324438402
9.267747664
41.73680495
1.04425E−10
3.13779E−09


Cdc37
0.203897376
9.718870186
41.71248815
1.05731E−10
3.17116E−09


Casc5
−0.148113275
9.168214058
41.66042957
1.08585E−10
 3.2507E−09


Plk1
−0.149116992
9.169178309
41.61760036
 1.1099E−10
3.31656E−09


Tspan13
−0.27748507
9.546665786
41.59956108
1.12018E−10
3.34112E−09


Lrrfip1
0.242872199
9.612103437
41.52173694
1.16568E−10
3.47041E−09


Phpt1
−0.340431832
9.254999299
41.51672903
1.16867E−10
3.47291E−09


Neurl3
−0.286535533
9.619611619
41.47993197
1.19087E−10
3.53241E−09


Samsn1
−0.284615787
9.795489494
41.41464949
1.23131E−10
3.64568E−09


Zfand2b
0.305793679
9.278292325
41.37076738
1.25927E−10
3.72162E−09


Myl12a
0.136720366
10.6785009
41.28722683
1.31425E−10
3.87703E−09


Abhd17c
−0.333647132
9.339492108
41.13540964
 1.4204E−10
4.18254E−09


H1f0
0.390304588
9.42979381
41.10570101
1.44215E−10
4.23887E−09


Eif4e3
0.324534257
9.248327932
41.0449197
 1.4877E−10
4.36474E−09


Glmp
0.274250566
9.373701727
41.04141669
1.49037E−10
4.36474E−09


Rps3a1
−0.090667436
11.67400244
40.92375183
1.58286E−10
4.62721E−09


Gm15518
0.228681393
9.168202192
40.85271619
1.64145E−10
4.78983E−09


Rpl15
−0.128287104
10.73595635
40.74537027
1.73414E−10
5.05118E−09


AI662270
0.246465493
9.519765054
40.71742886
1.75911E−10
5.11471E−09


Mettl23
0.24517514
9.492427646
40.62567419
1.84368E−10
5.35098E−09


Klhdc2
0.319366014
9.222186834
40.59634857
1.87156E−10
5.42216E−09


Mina
0.323015776
9.23713881
40.58692412
1.88061E−10
5.43863E−09


Tspan17
0.219617857
9.166558893
40.57116773
1.89584E−10
5.47287E−09


Mast4
−0.268505285
9.181693356
40.49239029
1.97383E−10
5.68788E−09


Nrros
0.326643367
9.212274046
40.45712311
2.00978E−10
5.78117E−09


Rpl35a
−0.091306405
11.72350894
40.31639133
2.15989E−10
6.16905E−09


Tecpr1
0.291847632
9.413080476
40.31802823
2.15808E−10
6.16905E−09


Tnfaip8
−0.272987616
9.630271166
40.31930658
2.15667E−10
6.16905E−09


Iqgap2
0.31845389
9.250835755
40.32196987
2.15373E−10
6.16905E−09


Nacc2
0.113924114
9.158821816
40.16272262
2.33665E−10
6.66212E−09


Sdc4
−0.319690858
9.184319545
40.14933305
2.35272E−10
6.69613E−09


Cox5b
0.173428491
10.04348938
40.0573221
2.46619E−10
7.00674E−09


Clec12a
0.347851947
9.187024502
39.98950738
2.55331E−10
7.24154E−09


Gadd45a
−0.316811725
9.199789132
39.9749406
2.57242E−10
7.28297E−09


Osbpl9
−0.347920433
9.306529663
39.95290108
2.60161E−10
7.35273E−09


Fabp5
−0.345368512
9.261083113
39.92194667
2.64317E−10
7.45714E−09


Skil
−0.300077713
9.558668519
39.91051627
2.65868E−10
7.48784E−09


Wdr95
0.256187953
9.168701519
39.61982647
3.08535E−10
 8.6744E−09


Plac8
0.315422604
10.56912296
39.54916829
3.19903E−10
8.97838E−09


Gzmb
0.462504549
10.35039813
39.53373005
3.22442E−10
9.03395E−09


Uqcrh
0.128854127
10.54582243
39.49939278
3.28161E−10
 9.1783E−09


Uqcrc2
0.243771762
9.469343526
39.41541302
3.42582E−10
9.56508E−09


Cdk1
−0.282404204
9.197337951
39.40808657
 3.4387E−10
9.58449E−09


Gm10263
−0.356543926
9.257269073
39.30048844
 3.6335E−10
 1.011E−08


Jak2
−0.339854318
9.275558522
39.22581003
3.77517E−10
1.04861E−08


Tff1
−0.343877655
9.186730263
39.16799524
3.88863E−10
1.07828E−08


Lypla1
0.281543012
9.34948844
39.03404604
4.16479E−10
1.15288E−08


H2afv
−0.270944916
9.565009799
38.95620237
4.33421E−10
1.19772E−08


Cmtm7
0.271258758
9.51328408
38.81166005
4.66732E−10
1.28757E−08


Zdhhc20
0.287294355
9.3491135
38.69079567
4.96545E−10
1.36293E−08


Sla2
0.304926143
9.310517201
38.69603223
4.95215E−10
1.36293E−08


Kif4
−0.083959125
9.162292079
38.69067267
4.96576E−10
1.36293E−08


Ythdc1
−0.304345812
9.376355755
38.65093522
 5.0679E−10
 1.3886E−08


Nek2
−0.092225985
9.163012699
38.61679108
5.15733E−10
1.41072E−08


Rad51
−0.174396222
9.174504007
38.53074142
 5.3898E−10
1.47182E−08


Serp2
0.23272394
9.169810674
38.36728567
5.86067E−10
 1.5977E−08


Dstn
0.315401763
9.262001726
38.26911479
6.16304E−10
 1.6773E−08


Stk17b
0.177968741
10.0837855
38.26279885
6.18302E−10
1.67991E−08


Rps7
−0.087706789
11.94320961
38.23534949
6.27061E−10
1.70085E−08


Rad51ap1
−0.140603093
9.168896905
38.1844517
6.43632E−10
1.74287E−08


1700097N02Rik
0.369642879
9.22738468
38.17693316
6.46117E−10
1.74668E−08


Gbp9
−0.314504429
9.2142636
38.1724911
 6.4759E−10
1.74774E−08


Ppdpf
0.258511912
9.446285275
38.05634714
6.87308E−10
1.85184E−08


Klra3
0.226113548
9.163693648
38.03066405
6.96415E−10
1.87325E−08


Ipmk
−0.359137989
9.271383503
38.01288193
7.02791E−10
1.88726E−08


Ebi3
−0.24348842
9.178706953
37.89078919
7.48176E−10
2.00581E−08


Lig1
−0.326558724
9.221381095
37.80398986
7.82216E−10
2.09359E−08


Ndc80
−0.199325077
9.175316165
37.55760968
8.87525E−10
2.36761E−08


Cphx3
0.057112739
9.157760229
37.56039337
8.86259E−10
2.36761E−08


Fam64a
−0.106025888
9.164136557
37.51593717
9.06691E−10
2.41476E−08


Bcl2l1
−0.336680952
9.376460922
37.44850717
9.38585E−10
2.49149E−08


Stat4
−0.279257694
9.506546424
37.45009794
 9.3782E−10
2.49149E−08
















TABLE 3D







LPL−3 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Ccl5
−3.484093569
13.31083469
2049.126973
0
0


Nkg7
−2.068053995
11.21003636
2880.823851
0
0


Plac8
−2.112200427
10.56917796
1107.936846
 6.221E−243
 3.3523E−239


Tmem176a
1.889821585
9.404480898
1048.337873
 5.5924E−230
 2.2602E−226


Ifitm2
−2.051929407
10.68450167
928.579589
 6.0127E−204
 1.944E−200


Tmem176b
1.68947291
9.448057145
897.7209976
 3.0708E−197
 8.2737E−194


Gzmb
−2.848731127
10.35041419
861.179545
 2.6985E−189
 6.2321E−186


Gzma
−3.564634629
10.72609336
855.0832065
 5.7078E−188
 1.1534E−184


Lgals3
−1.660989425
10.20024122
735.8113412
 4.8816E−162
 8.7685E−159


Ctsw
−1.058583981
9.943492884
639.5495471
 4.187E−141
 6.7688E−138


Trib2
1.252838144
9.363791422
630.2041805
 4.5125E−139
 6.6317E−136


Fgl2
−1.622816533
9.496139008
629.1073924
 7.8155E−139
 1.0529E−135


Ccr5
−1.619827421
9.514363816
614.231888
 1.3437E−135
 1.671E−132


mt-Co3
0.389203125
12.09929332
564.6764741
 8.0786E−125
 9.3285E−122


Rgs1
−1.059866606
11.08976227
547.5976498
 4.1937E−121
 4.5197E−118


Rpl24
0.322646952
11.77231383
525.051429
 3.3694E−116
 3.4043E−113


Ifitm3
−1.878179626
9.717619666
520.6260984
 3.0926E−115
 2.9409E−112


Rps27a
0.315480197
11.80985986
518.9505848
 7.1591E−115
 6.4296E−112


Rpl35
0.438027821
11.18862718
511.4426173
 3.0785E−113
 2.6193E−110


mt-Atp6
0.346407175
12.47118005
484.3733011
 2.3885E−107
 1.9307E−104


Il17re
1.006347022
9.176312021
478.786329
 3.925E−106
 3.0215E−103


Emb
0.723801071
10.25108396
461.5739746
 2.1846E−102
 1.6053E−99


Rps3a1
0.298969367
11.67402431
449.1348284
 1.1128E−99
7.82125E−97


AW112010
−0.654555404
11.38311024
444.3256362
1.23889E−98
8.34493E−96


mt-Co1
0.333063388
12.21547389
441.1231167
6.16614E−98
3.98727E−95


Rps7
0.296343917
11.94322764
440.2941583
 9.3417E−98
5.80838E−95


Tcf7
0.970709967
9.419632902
430.9726984
9.98116E−96
5.97613E−93


Serpinb1a
1.594483756
9.512634337
428.3674149
3.68317E−95
 2.1265E−92


Rplp0
0.280821674
12.38790648
420.5795835
1.82513E−93
1.01741E−90


Rps19
0.311069961
12.57927057
409.2190817
5.42142E−91
2.92142E−88


Rpl31
0.392600539
10.8717304
403.7205395
8.53158E−90
4.44908E−87


Fasl
−1.073589983
9.594179124
401.7278324
2.31638E−89
 1.1702E−86


Ifng
−1.773900792
9.68657816
393.9867729
1.12192E−87
5.49606E−85


mt-Nd1
0.433097056
11.1492421
392.3866971
2.50204E−87
1.18965E−84


Tnfrsf25
1.035091499
9.258890182
381.807873
5.02761E−85
2.32218E−82


Rps29
0.309768839
12.24471351
380.2129007
1.11843E−84
5.02238E−82


Satb1
0.803900794
9.757124872
378.0954162
3.23312E−84
1.41261E−81


Slamf6
1.078369968
9.319064798
371.7261222
 7.8771E−83
3.35108E−80


Rpl4
0.268392668
11.68907178
368.4591631
4.05214E−82
1.67966E−79


1110034G24Rik
1.031636667
9.229074688
368.1006541
4.85002E−82
1.96014E−79


Rpl10
0.330381836
11.48679578
365.7282838
1.59329E−81
6.28221E−79


Klrk1
−1.466071219
9.564416625
363.1277724
5.86852E−81
2.25882E−78


Rps8
0.298612024
11.59275565
354.4180219
4.62455E−79
1.73862E−76


Rps18
0.253195601
12.47336872
353.1207929
 8.8624E−79
3.25613E−76


Rpl11
0.254557202
11.70912388
351.9326937
1.60795E−78
5.77646E−76


Ramp3
1.163483877
9.937171094
350.6122351
3.11758E−78
1.09562E−75


Litaf
−1.200479411
9.445010559
345.721109
3.62197E−77
 1.2458E−74


Rpl6
0.253049825
11.76090091
341.3669788
3.21491E−76
1.08275E−73


Rpl32
0.241752504
12.44743739
338.9149259
1.09947E−75
3.56635E−73


Hspa8
−0.492721587
12.33067832
338.9084539
1.10304E−75
3.56635E−73


Rpl18
0.257294066
11.80695531
335.2274387
6.98668E−75
2.21464E−72


Rpl17
0.235452932
12.29667899
334.8509986
8.43833E−75
2.62335E−72


Rps11
0.243194098
12.26312142
333.0602877
2.07139E−74
6.31813E−72


Ccl4
−2.829589103
9.567161703
332.3003568
 3.0323E−74
 9.0778E−72


Dnajb1
−1.447456963
10.31718294
330.6483343
6.94352E−74
2.04089E−71


Nebl
0.947797864
9.313896931
326.9696736
4.39345E−73
1.26829E−70


mt-Co2
0.314373224
11.38674425
320.6458124
1.04768E−71
2.97138E−69


Gzmk
−1.551161338
9.363616364
319.3540035
2.00269E−71
5.58198E−69


Ctla2a
−0.96000106
10.33574783
318.1231264
3.71303E−71
1.01737E−68


mt-Nd4
0.424844629
10.50325528
313.2764014
4.22177E−70
1.13749E−67


AA467197
−1.116233892
9.471396917
303.1631618
6.73964E−68
1.78612E−65


Ccr6
0.698205543
9.169603333
297.721111
1.03341E−66
2.69452E−64


mt-Cytb
0.368527173
11.07880159
295.4669217
3.20185E−66
8.21605E−64


Tox2
0.915454575
9.191330653
295.0827827
3.88237E−66
9.80661E−64


Sh3bgrl3
−0.377804436
11.24487265
294.6544492
4.81306E−66
1.19705E−63


Rpl13a
0.205282595
13.13152313
285.2357853
5.42831E−64
1.32961E−61


Klrd1
−1.254419995
9.372630202
281.7142906
3.17707E−63
7.66574E−61


Naca
0.316236433
10.80148809
280.0481025
7.33017E−63
1.74264E−60


Rps14
0.200329253
12.65498588
275.9777944
5.65102E−62
1.32398E−59


Cdkn1a
−1.052199877
9.693085153
274.133611
1.42571E−61
3.29258E−59


Rpl13
0.20968469
12.63773823
272.0638942
4.02809E−61
9.17155E−59


Rpl21
0.243080459
11.76877603
271.3049896
5.89515E−61
1.32363E−58


Epsti1
−0.650432645
9.945996659
268.5614751
2.33578E−60
5.17264E−58


Rpl8
0.242856061
11.65231323
268.265358
2.71001E−60
5.92028E−58


Rps9
0.221652232
11.99541867
264.7442415
1.58643E−59
3.41949E−57


Nav2
0.696878506
9.1720222
262.7499097
4.31632E−59
9.18126E−57


Rpl26
0.240002472
11.57434921
260.0823989
1.64648E−58
3.45674E−56


Ms4a4b
−0.505784178
10.7517777
255.3500466
1.77064E−57
3.66976E−55


Rpl35a
0.231823918
11.72352561
254.4117161
2.83582E−57
5.80302E−55


KIf2
1.050914377
9.96058395
253.5496162
4.37132E−57
8.83335E−55


Dnaja1
−0.649029266
10.76357472
252.0606719
  9.23E−57
1.84213E−54


Dapk2
−0.98929305
9.267215042
251.000474
1.57155E−56
3.09826E−54


Rps6
0.203360892
12.20845582
250.6981996
1.82905E−56
3.56247E−54


Ccnd2
−0.72559072
9.824522402
248.9497462
4.39953E−56
 8.467E−54


Rpl15
0.315788404
10.73598071
247.5305633
8.97036E−56
1.70606E−53


Rps28
0.291807857
11.70754918
244.5326764
4.04034E−55
7.59489E−53


Ccr2
−0.829690745
9.897671261
243.2619236
7.64681E−55
 1.4209E−52


Il12rb2
−0.988980941
9.345961023
240.1135399
3.71491E−54
6.82447E−52


Tnfsf8
0.919482593
10.01800267
236.6741879
2.08882E−53
3.79415E−51


1700003C15Rik
0.760033251
9.171905958
236.1461485
2.72298E−53
4.89108E−51


Rpl34
0.203480775
11.98010645
235.5343091
3.70223E−53
6.57694E−51


Il1r1
0.593316052
9.16767934
234.6804095
5.68417E−53
9.98807E−51


Zfp3611
0.736388217
9.5364341
234.5048916
6.20785E−53
 1.0791E−50


Amica1
−1.075213054
9.335190274
234.4351252
6.42917E−53
1.10568E−50


Id2
−0.621714646
10.64556657
232.0313476
2.14955E−52
3.65786E−50


Serpina3g
−0.944522464
9.674077113
230.2129487
5.35676E−52
9.02056E−50


Pim1
−0.589343531
10.82520099
229.9043517
6.25463E−52
 1.0424E−49


Rps4x
0.212878973
11.84808117
229.3253412
8.36518E−52
1.37991E−49


Rpl10a
0.271453577
11.14239123
227.5823075
 2.0073E−51
3.27778E−49


Rplp1
0.244800173
11.70340699
226.3395342
3.74676E−51
6.05702E−49


Rps25
0.258258722
11.11877073
223.8649551
1.29829E−50
2.07803E−48


Rps20
0.300464014
11.06882543
221.3182323
4.66495E−50
7.39349E−48


H2-D1
−0.231313769
12.28194321
220.6330101
6.58126E−50
1.03294E−47


Sgip1
0.972538832
9.193478982
220.2322415
 8.0487E−50
1.25111E−47


Bhlhe40
−0.446071264
10.72333649
218.3308818
2.09154E−49
3.22018E−47


Hspa1a
−1.839599971
11.00088949
218.2514974
2.17662E−49
3.31956E−47


Lysmd2
0.793775935
9.24333495
213.2812689
2.64248E−48
3.99237E−46


Rpl18a
0.178127329
12.84271416
213.0268771
3.00268E−48
4.49457E−46


1700012B07Rik
0.635632788
9.170176807
211.5320497
6.36241E−48
9.43621E−46


Znrf1
0.677706008
9.400584211
210.8496366
8.96398E−48
1.31738E−45


Rps5
0.196579458
12.08892933
208.586472
2.79423E−47
4.06951E−45


Rpl14
0.206279565
11.87709072
208.0441994
3.66923E−47
5.29615E−45


Rps23
0.183689361
12.48535349
207.3464825
5.20961E−47
7.45297E−45


Serpinb9
−0.869185379
9.8583095
205.8671083
1.09544E−46
1.55341E−44


Rps27
0.222000489
13.23482494
204.3505846
2.34686E−46
3.29907E−44


Cmtm7
−0.738958546
9.513298908
203.6105545
3.40379E−46
4.74359E−44


Pde5a
0.594157393
9.168289214
203.3978824
3.78764E−46
5.23341E−44


Ubb
−0.320988013
12.90465858
202.2363742
6.78919E−46
 9.3012E−44


Smco4
0.707891435
9.324733933
202.1246558
7.18119E−46
9.75556E−44


Hilpda
−0.79271988
9.667584429
195.5064907
1.99743E−44
2.69087E−42


Gadd45b
−0.824371717
9.727231622
195.3857517
2.12237E−44
2.83556E−42


Rcbtb2
−0.897551208
9.398945286
194.1830275
3.88434E−44
5.14707E−42


Slamf7
−0.863101363
9.281089293
193.3260324
5.97533E−44
7.85344E−42


Anxa2
−0.662567838
9.842688336
192.9337152
7.27762E−44
9.48791E−42


Rpl19
0.175722974
12.1175247
192.3267078
9.87363E−44
1.27694E−41


Rpl22l1
0.315937439
10.87576896
192.041405
1.13959E−43
1.46211E−41


Tuba1b
−0.817728304
9.730396626
189.0237562
 5.1931E−43
6.61037E−41


Ifitm1
−2.386356518
9.599763038
188.2845877
7.52969E−43
9.50977E−41


Icos
0.472569335
10.25650654
188.1996714
7.85803E−43
9.84751E−41


Rora
0.507992709
9.982330628
187.9097328
9.09084E−43
1.13048E−40


Rps24
0.205699287
12.0059475
184.8181341
4.30032E−42
5.30679E−40


Smim3
−0.828729834
9.350028927
184.7835494
4.37574E−42
5.35895E−40


Klrc1
−0.911521288
9.658426162
183.5897616
7.97391E−42
 9.6922E−40


Il1r2
1.118729196
9.256730933
183.3064645
9.19434E−42
1.10922E−39


Xcl1
−1.732920533
9.405068169
182.9886277
1.07872E−41
1.29175E−39


Il22
1.870572455
9.482887799
182.8520365
 1.1554E−41
1.37339E−39


Plek
−0.751460525
9.215817596
182.2332023
1.57702E−41
1.86089E−39


Rps2
0.235163135
11.63594659
180.5370278
 3.6997E−41
4.33401E−39


Fosb
−1.0044227
9.410738732
179.1890367
7.28599E−41
8.47377E−39


Lilr4b
−0.647414806
9.778128629
177.1360399
2.04534E−40
2.36179E−38


Rpl12
0.278475812
10.9924871
176.0772239
3.48315E−40
3.99352E−38


Rassf3
0.683581715
9.199068087
176.0013684
3.61857E−40
4.11956E−38


Rps16
0.174627684
12.35142977
175.5750544
4.48364E−40
5.06871E−38


Cldnd1
−0.684362495
9.795115659
175.4406393
4.79715E−40
5.38546E−38


Ctsd
−0.594814309
9.64172066
172.9552202
1.67397E−39
1.86631E−37


Rpl23
0.203421469
11.70878799
170.7965908
4.95662E−39
5.48827E−37


Rgs10
0.539364334
9.631678923
169.9400775
7.62525E−39
 8.3857E−37


S1pr1
0.756906257
9.290346876
168.9861794
1.23197E−38
1.34567E−36


Dusp5
−0.50010877
9.994364417
168.5445148
1.53839E−38
 1.6691E−36


Sptssa
0.530775409
9.597728351
168.3290064
 1.7145E−38
1.84778E−36


Lsp1
0.371113465
10.32147684
167.8015721
2.23534E−38
2.39314E−36


Tmsb4x
−0.190326855
14.24925577
166.3632964
4.60795E−38
 4.9008E−36


Icam1
−0.836752343
9.404341293
166.161961
5.09903E−38
5.38764E−36


Rps26
0.255375413
10.99418168
166.0950448
5.27357E−38
5.53588E−36


Socs2
−0.893608998
9.351698274
165.9933737
5.55026E−38
5.78874E−36


Rpa2
−0.768064662
9.392655105
164.4327646
1.21681E−37
1.26096E−35


Rps3
0.163431739
11.96715944
163.6126366
1.83816E−37
1.89272E−35


Rpl41
0.148484636
12.79527095
163.2689082
2.18512E−37
2.23574E−35


Tspan13
0.526355965
9.546671007
162.7547983
2.83002E−37
2.87736E−35


Cd69
−0.700203337
9.886218478
161.6594313
4.91014E−37
4.96108E−35


Odc1
0.530928101
10.453789
160.6935792
 7.982E−37
8.01472E−35


Bcl2l1
−0.778019491
9.376464206
159.4570551
1.48688E−36
1.48376E−34


Mrps5
0.67574663
9.263071627
158.1039542
2.93715E−36
2.91301E−34


Hey1
0.339150364
9.161115987
157.942378
 3.1859E−36
3.14044E−34


Glrx
−0.646284655
9.565877632
157.1553176
4.73381E−36
4.63799E−34


Abi3
−0.803877473
9.334617896
156.9668392
 5.2047E−36
5.06863E−34


H2afy
−0.435862619
9.9300789
156.0855564
8.10908E−36
7.84978E−34


Samsn1
−0.607961392
9.795508071
156.0048309
8.44524E−36
8.12653E−34


Rps15
0.19771985
11.49082426
154.2349025
2.05775E−35
1.96838E−33


Rpl29
0.219501544
11.21441306
152.8746442
4.08009E−35
3.87992E−33


Gmfg
0.332354389
10.21757862
152.1259771
5.94693E−35
5.62211E−33


Limd2
0.389855996
10.089006
150.8366734
1.13785E−34
1.06945E−32


Rpl23a
0.168220353
12.17564707
150.4212869
1.40242E−34
1.31049E−32


Rpl28
0.263182468
10.72582102
149.6866768
2.02976E−34
1.88581E−32


Lilrb4a
−0.653757891
9.646924972
148.6586133
3.40536E−34
3.14578E−32


Ftl1
0.286104977
10.82038569
148.5083679
3.67287E−34
3.37361E−32


Cd3g
−0.263497128
11.10927275
148.2266944
4.23231E−34
3.86551E−32


Arhgap31
0.539802079
9.654196025
146.6272891
9.46691E−34
8.59787E−32


Serpinb6b
−0.694956176
9.622268614
145.5103981
1.66103E−33
1.50012E−31


Tbx21
−0.741006971
9.277656746
144.9687718
2.18167E−33
1.95938E−31


Tmem64
0.7402499
9.248102293
143.79394
3.94133E−33
 3.5202E−31


Gnb2l1
0.257536167
10.54032337
143.4136363
4.77301E−33
4.23959E−31


Tm6sf1
−0.614151136
9.205991409
141.0728903
1.55097E−32
1.37011E−30


Gpr171
−0.527919467
9.722719309
140.898755
1.69309E−32
1.48753E−30


Ass1
0.557775131
9.534395587
140.432394
2.14121E−32
1.87107E−30


Hsp90aa1
−0.551436005
10.7686095
140.4135022
2.16168E−32
 1.8788E−30


Nsg2
0.457632765
9.167222657
139.9230257
2.76724E−32
2.39225E−30


Rpl22
0.24172144
10.60720364
139.3472402
3.69794E−32
3.17983E−30


Krtcap2
−0.356333163
10.06414216
139.1868613
4.00896E−32
3.42904E−30


Stk24
0.468770685
9.608428218
138.9674266
4.47733E−32
3.79489E−30


Rgcc
−0.900503044
9.563503156
138.9646335
4.48364E−32
3.79489E−30


Gpr34
−0.757646242
9.25651743
138.0295522
7.18003E−32
6.04544E−30


St6galnac1
0.564245409
9.173614926
137.6712982
8.59957E−32
7.20314E−30


Pkp4
0.568152144
9.180314385
136.6038442
 1.4721E−31
 1.2267E−29


Slpi
0.486549059
9.166637373
135.5644851
2.48466E−31
2.05985E−29


Cxcr3
0.531979192
9.551340066
134.7179405
3.80568E−31
3.13891E−29


Lmna
−0.825151176
9.713615726
133.8629815
5.85392E−31
4.80378E−29


Rpl7
0.189257523
11.21210542
133.217726
8.10208E−31
6.61506E−29


2810417H13Rik
−1.285204722
9.337765738
132.6784218
 1.0631E−30
8.63619E−29


S100a4
0.670964086
9.866831921
132.345813
 1.257E−30
1.01603E−28


Ifi27l2a
0.667189776
9.81722567
132.2788965
1.30009E−30
1.04564E−28


Tubb5
−0.571247104
10.00333821
131.589452
1.83994E−30
 1.4725E−28


Birc5
−0.886968249
9.251705243
131.3715948
2.05336E−30
 1.6352E−28


Txn1
−0.38477823
10.00228125
130.9094939
2.59157E−30
2.04367E−28


Dtx1
0.710488782
9.250196625
130.9121903
2.58805E−30
2.04367E−28


Mast4
0.551969332
9.181692037
129.6748765
4.82707E−30
3.78808E−28


Cd38
−0.722178037
9.272404605
129.2849214
5.87497E−30
4.58815E−28


Iltifb
0.466521316
9.164994613
128.6602113
8.04814E−30
6.25511E−28


Plcb4
0.396482666
9.163609867
128.5931213
8.32484E−30
 6.4392E−28


Eef1a1
0.151323644
12.38193961
127.3339193
1.57005E−29
1.20864E−27


Gbp2
−0.762105085
9.365780295
126.7822278
2.07319E−29
 1.5884E−27


Rpl3
0.150394133
12.09257424
126.6318569
2.23638E−29
1.70535E−27


Ccr7
1.097629633
9.273175644
125.9374899
3.17323E−29
2.40838E−27


Nr4a2
−0.69869436
9.521215332
125.4110146
4.13733E−29
3.12542E−27


Rplp2
0.17351654
11.91020443
124.8852816
5.39237E−29
4.05456E−27


Rps10
0.188460525
11.22201226
123.7513581
 9.549E−29
7.14672E−27


Eif3f
0.224777999
10.6645601
123.6885264
9.85622E−29
7.34265E−27


Klrg1
−0.619319207
9.202815326
123.5187912
1.07365E−28
7.96173E−27


Ppia
−0.201559198
11.56548656
122.9632193
1.42058E−28
1.04863E−26


mt-Nd2
0.348333644
9.930964526
122.1357147
2.15576E−28
1.58409E−26


Cxcr6
−0.460498452
10.38993977
122.1090465
2.18493E−28
1.59826E−26


Stmn1
−1.215251954
9.430719181
120.6930632
4.46074E−28
 3.2483E−26


Hspa1b
−1.061056122
9.330476915
120.3110025
5.40813E−28
3.92053E−26


Plscr1
−0.642118473
9.521580006
119.2788005
9.09973E−28
6.56724E−26


Ccnd3
−0.536704025
9.527398394
118.8178614
1.14801E−27
8.24835E−26


Izumo1r
0.73550348
9.250980666
118.2124259
1.55778E−27
 1.1143E−25


Cdk5r1
0.576455527
9.178698472
117.6513688
2.06707E−27
1.47208E−25


Eef1b2
0.295763405
10.0755718
117.2418803
2.54109E−27
1.80172E−25


Camk2n1
−0.685364499
9.340459445
117.1854268
2.61445E−27
1.84564E−25


Nfkbia
−0.443575026
10.83336515
117.0602753
2.78475E−27
1.95731E−25


2010111l01Rik
−0.58976034
9.402743483
116.5749773
3.55676E−27
2.48911E−25


Rps17
0.255513344
10.61526354
115.2722497
6.86021E−27
4.77841E−25


Mxd1
−0.561117916
9.600457879
115.2644894
6.88711E−27
4.77841E−25


Gngt2
−0.645521342
9.363421412
114.291152
1.12514E−26
7.73998E−25


Eif3e
0.276298263
10.13949795
114.293671
1.12371E−26
7.73998E−25


Rpl9
0.148253371
11.84229891
113.9941505
1.30693E−26
 8.9525E−25


Ccr4
0.593390397
9.227425335
113.5628703
1.62448E−26
1.10807E−24


Txk
0.567145719
9.335340173
113.2795033
1.87405E−26
1.27293E−24


Aqp3
0.501331766
9.177291322
112.4084827
2.90782E−26
1.96685E−24


S100a11
−0.300484266
10.60261953
112.3500062
2.99486E−26
2.01729E−24


Pecam1
0.57408471
9.257221083
111.8795665
3.79688E−26
 2.5469E−24


Avpi1
0.587850586
9.200072787
111.4995665
4.59906E−26
3.07225E−24


Ly6c2
−1.077631275
9.266017563
111.3836024
 4.8761E−26
3.24391E−24


Rpl36a
0.210891627
11.04534811
109.1644599
1.49364E−25
 9.896E−24


Tnfrsf26
0.569766024
9.206961652
107.6619109
 3.1877E−25
2.10336E−23


Rbpj
−0.56851782
9.385158504
107.1608345
4.10469E−25
2.69741E−23


Smpdl3a
0.418240822
9.556683298
106.5726921
 5.5229E−25
3.61471E−23


Fau
0.133036285
12.30167072
106.2430132
6.52254E−25
4.25175E−23


Slbp
0.483341551
9.609796597
106.0970615
7.02107E−25
4.55834E−23


Efhd2
−0.507188907
9.465456867
105.6326427
8.87536E−25
5.73916E−23


Actn1
0.575522456
9.187194301
105.6017048
9.01501E−25
5.80624E−23


Itga1
−0.481159298
9.197482484
104.95344
 1.2504E−24
 8.0214E−23


Junb
−0.334624697
11.89080177
104.8572636
1.31259E−24
8.38706E−23


Tspo
0.314378756
9.918101619
104.6270095
1.47433E−24
9.38349E−23


Dusp10
0.58029624
9.475539651
104.0297313
1.99303E−24
 1.2635E−22


Rpl30
0.19389992
10.96422059
103.0676934
 3.2389E−24
2.04531E−22


Lztfl1
−0.623767739
9.420902283
102.5746732
 4.1541E−24
2.61304E−22


Dennd4a
−0.578405941
9.353169382
102.5290984
4.25078E−24
2.66349E−22


5430421N21Rik
0.646852187
9.214329084
102.1476476
 5.1534E−24
 3.2166E−22


Ldha
0.277341313
10.35628782
101.9060758
5.82177E−24
 3.6198E−22


Eomes
−0.779813416
9.215476434
101.3944563
7.53744E−24
4.66859E−22


Ppp1cc
0.303541918
10.14034874
99.89229099
1.60914E−23
9.92879E−22


Malat1
−0.254811632
14.66845899
99.87543084
 1.6229E−23
9.97559E−22


Gpr18
−0.656361909
9.406528173
99.35693704
2.10858E−23
1.29119E−21


H2-K1
0.198523334
11.61002829
98.90320569
 2.6515E−23
1.61751E−21


Runx3
−0.471586573
9.557610794
97.59444435
5.13478E−23
3.12063E−21


Tmsb10
0.154827346
12.94248991
97.16784513
6.36926E−23
3.85639E−21


Lag3
−0.863184819
9.272147436
97.12994873
6.49234E−23
3.91624E−21


Cpm
0.566098049
9.24931383
97.09275961
6.61544E−23
3.97566E−21


Ms4a6b
−0.333588841
10.1948354
96.00750204
1.14449E−22
6.85253E−21


H2-Q7
−0.264138572
10.62105384
95.84377435
1.24316E−22
7.41586E−21


Rpl27a
0.13805365
11.7398871
94.43658567
2.53071E−22
 1.5041E−20


Gas7
−0.461230762
9.194247453
94.25268389
 2.7771E−22
1.64449E−20


Tecpr1
0.465177325
9.413068687
93.95828779
3.22244E−22
1.90124E−20


Tsc22d1
0.514971286
9.170828337
93.63509947
 3.794E−22
2.23032E−20


Rorc
0.340741054
9.165458039
92.99485602
5.24304E−22
3.07098E−20


Ptrh1
0.416669722
9.177194315
92.97032326
5.30844E−22
3.09806E−20


Dhrs3
0.469692706
9.174233573
92.76398048
5.89178E−22
3.42613E−20


Nfkbiz
−0.472625752
9.633382235
92.64171855
6.26723E−22
 3.6314E−20


Gnas
−0.249759348
10.37740546
92.59947857
6.40243E−22
3.69649E−20


Il2ra
−0.594584914
9.266141063
91.94031851
8.93303E−22
 5.1392E−20


Slc9a3r1
−0.397597403
9.651360086
91.91314639
9.05654E−22
5.19177E−20


Smoc2
0.217368642
9.159952973
91.81873843
9.49907E−22
5.42622E−20


Asb2
−0.566764352
9.480727364
91.47295697
1.13128E−21
6.43952E−20


Ccnb2
−0.574479423
9.212362432
91.21075062
1.29157E−21
7.32613E−20


Chst12
−0.591913388
9.307931014
91.00443213
1.43351E−21
8.10282E−20


Dusp2
−0.651560783
9.446121177
90.7507899
1.62956E−21
9.17892E−20


Rexo2
0.41801584
9.465243005
89.60388759
2.90952E−21
1.63317E−19


Hsph1
−0.62803205
9.472358293
88.22977687
 5.8276E−21
3.25983E−19


Arf6
−0.341525694
9.853237401
87.74031434
7.46375E−21
4.16066E−19


Cd84
0.465838199
9.34855222
87.58985183
8.05368E−21
4.47408E−19


Gbp3
−0.575087315
9.305894756
86.67276617
1.28048E−20
7.08912E−19


Cyb5a
0.418826942
9.520944338
86.4705939
1.41831E−20
7.82537E−19


Traf4
−0.547865622
9.359798586
85.45465565
2.37076E−20
 1.3036E−18


Prkcb
0.470193718
9.208819069
84.45661779
3.92738E−20
2.15221E−18


Lrrc25
0.258088384
9.161329097
84.44163993
3.95725E−20
2.16125E−18


Sh2d2a
−0.380576774
9.846351053
84.3959534
4.04976E−20
2.20432E−18


Hmgn2
−0.601700458
9.445400237
83.92876523
5.12928E−20
2.78255E−18


Rhoc
−0.562347362
9.244274494
83.85510055
5.32401E−20
2.87852E−18


Acsbg1
0.47503696
9.314382446
83.81601429
5.43031E−20
2.92622E−18


Dkkl1
−0.529480805
9.308686946
83.51509157
6.32314E−20
3.39601E−18


Hcst
−0.252513111
10.61089653
83.25678198
7.20579E−20
3.85724E−18


Acad
−0.497894127
9.426499963
83.21766254
7.34981E−20
3.92135E−18


Asap1
0.515125763
9.22985191
82.67182493
9.68723E−20
5.15144E−18


Cox7a21
0.245914858
10.13150038
82.17709101
1.24424E−19
6.59486E−18


Ap3s1
0.392394745
9.478733316
82.12212471
1.27932E−19
6.75868E−18


Shisa5
0.193645712
11.05064206
82.01459451
1.35085E−19
7.11333E−18


Ltb
0.362820009
10.15488605
81.87811624
1.44743E−19
7.59713E−18


Ccna2
−0.403785662
9.193840202
81.36484801
1.87666E−19
9.81817E−18


Mns1
−0.536056376
9.250789284
81.30652077
1.93288E−19
1.00796E−17


Csf1
−0.510822609
9.192100854
81.19288199
2.04728E−19
1.06419E−17


Ramp1
0.361595708
9.166176693
80.89429173
2.38121E−19
 1.2338E−17


Cyba
−0.238796652
10.43095334
80.73209482
 2.5849E−19
1.33506E−17


Ptms
−0.527438745
9.287856152
80.5814284
2.78969E−19
1.43625E−17


Ccl3
−0.910093878
9.220257049
80.47423238
2.94521E−19
 1.5115E−17


Ppm1j
−0.509834666
9.231926591
80.0920149
3.57374E−19
1.82826E−17


Asf1b
−0.539633023
9.223320297
80.00113282
3.74195E−19
1.90828E−17


Rpl39
0.140509529
11.77739482
79.99106699
3.76106E−19
1.91199E−17


Eif3h
0.207162722
10.29703651
79.51031985
4.79713E−19
2.43105E−17


Itm2b
−0.202508228
10.97659374
79.05171761
6.05051E−19
3.05664E−17


Rpl5
0.195642628
10.56774531
78.40370728
8.39944E−19
4.23007E−17


Mt1
−0.681149163
9.25333207
78.01199452
1.02417E−18
5.14183E−17


Slc2a3
−0.535215118
9.267489223
77.88899828
1.08997E−18
5.45524E−17


Jund
−0.291126203
11.83355423
77.37694158
1.41255E−18
7.04791E−17


Vcam1
0.41406013
9.169856475
77.29191905
1.47468E−18
7.33529E−17


Cxcl3
0.555799907
9.168367119
77.24424832
1.51071E−18
7.49144E−17


Ralgps2
0.447656391
9.202191153
77.21516413
1.53312E−18
7.57933E−17


Atf3
−0.680296415
9.293174358
76.62548982
2.06655E−18
1.01853E−16


Osgin1
−0.593267168
9.241885952
76.07875288
2.72574E−18
1.33934E−16


Ctla2b
−0.522490544
9.270070138
76.04275853
2.77588E−18
1.35985E−16


Faah
0.44588788
9.275977389
75.14662319
4.37024E−18
2.13442E−16


Prr7
−0.393644523
9.824437204
75.07309927
4.53605E−18
2.20873E−16


Tnfrsf18
−0.323439954
10.06784361
74.91937037
4.90336E−18
2.38041E−16


Fam101b
0.44395883
9.174664735
74.87849381
5.00593E−18
2.42293E−16


Sla
0.378547652
9.546204364
74.52405875
5.99038E−18
2.89076E−16


Cdca3
−0.416722054
9.196808089
73.81078112
8.59757E−18
4.13656E−16


Lgals1
−0.288816159
11.62800987
73.67765585
9.19741E−18
4.41203E−16


Stk32c
−0.48699157
9.236288863
73.53762236
9.87362E−18
4.72239E−16


Gm9493
0.236255264
10.33364392
73.33101042
1.09632E−17
5.22805E−16


Rrm2
−0.656260613
9.247707962
73.06368613
1.25533E−17
5.96873E−16


Gm8730
0.223093492
10.44488374
72.87273433
1.38285E−17
6.55579E−16


Serpina3f
−0.661617841
9.259699948
72.26884197
1.87789E−17
 8.8766E−16


Il14ra
−0.441442073
9.499543146
71.80778832
2.37214E−17
1.11802E−15


Ckb
0.483538637
9.335721648
71.61412486
2.61677E−17
1.22973E−15


Acp5
0.397423986
9.396912844
71.56913307
2.67712E−17
1.25185E−15


Rcn1
−0.444001155
9.211899643
71.5675056
2.67933E−17
1.25185E−15


Spc24
−0.443249395
9.204195345
70.62308424
4.32427E−17
2.01459E−15


Rps12
0.192586529
10.77092803
70.24630421
5.23433E−17
2.43155E−15


Clta
−0.284608639
9.8733927
70.18241162
5.40664E−17
 2.5044E−15


Skil
−0.428945944
9.558639486
69.82061796
6.49504E−17
2.99997E−15


Cdkn2c
−0.492927169
9.239141777
69.80701627
6.53998E−17
3.01212E−15


2310001H17Rik
0.45313487
9.290442993
69.72339182
6.82321E−17
3.13364E−15


Egln3
0.460826066
9.20786883
69.16184134
9.07061E−17
4.15398E−15


Ncor1
0.309981143
9.664996809
69.00893228
9.80185E−17
4.47618E−15


Tnfrsf9
−0.607969904
9.402131727
68.99666734
 9.863E−17
4.49141E−15


Prelid2
0.424695126
9.192055381
68.68295117
1.15636E−16
5.25106E−15


Padi2
−0.447711328
9.215639868
67.88323124
 1.7347E−16
7.85524E−15


Ndufa4
0.305255781
9.735529358
67.70371654
1.90005E−16
8.57995E−15


Gbp7
−0.476561834
9.290910914
67.67068329
1.93215E−16
 8.7006E−15


Ube2c
−0.631545281
9.233527278
67.5201665
2.08543E−16
9.36474E−15


Ifrd1
−0.336527284
10.02583543
67.17457762
2.48498E−16
 1.1128E−14


Cdk1
−0.39769185
9.19735213
67.15632591
2.50809E−16
1.12005E−14


Tuba4a
−0.464387774
9.389389589
67.02800208
2.67678E−16
1.19209E−14


Neurl3
−0.393731218
9.619600065
66.75753682
3.07041E−16
1.36363E−14


Cnn3
0.198623534
9.160462978
66.70096425
 3.1598E−16
1.39949E−14


Cd47
−0.236561159
10.2358714
66.62087045
3.29083E−16
1.45354E−14


Pelo
−0.459502434
9.234978423
66.57690441
3.36506E−16
1.48228E−14


Ubc
−0.246876595
11.04983306
66.51122535
3.47907E−16
1.52833E−14


Ptma
−0.194475287
11.28840747
66.30598276
3.86085E−16
1.69145E−14


Itgb1
−0.6429514
9.29928184
66.26452004
3.94292E−16
1.72274E−14


Rpl37a
0.114612104
12.61563941
66.16203022
4.15337E−16
1.80979E−14


Ptger4
−0.503230593
9.34461786
66.11246381
4.25914E−16
1.85089E−14


Rps15a
0.109891473
12.40383431
66.08931246
4.30946E−16
1.86774E−14


Ccl1
−1.01837332
9.258139682
65.45285896
5.95208E−16
2.57276E−14


Tcp11l2
0.407869719
9.433884628
65.28344021
6.48641E−16
2.79625E−14


Eif3k
0.209698805
10.09230815
65.11697117
7.05816E−16
3.03463E−14
















TABLE 3E







LPL−4 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Jun
2.590143686
9.603439503
1533.659276
0
0


Klf6
1.545036169
9.89686973
1361.417237
 5.089E−298
 4.1134E−294


Dusp1
1.611063957
9.939042764
1258.200347
 1.3708E−275
 7.387E−272


Fos
2.334554203
9.517129944
1248.343188
 1.9017E−273
 7.6858E−270


Ubb
0.716874178
12.90465449
1126.424498
 5.9667E−247
 1.9291E−243


Rgs1
1.270826473
11.08975568
1112.879546
 5.2433E−244
 1.4127E−240


Hspa1a
2.826179586
11.00085583
1078.202577
 1.805E−236
 4.1685E−233


Ubc
0.914435003
11.0498222
1066.356992
 6.778E−234
 1.3697E−230


Dnajb1
1.892963828
10.31714857
948.4998693
 2.8108E−208
 5.0489E−205


Cd69
1.363050626
9.886202315
884.9866185
 1.8013E−194
 2.9119E−191


Zfp36
1.848813098
9.294559476
835.0942821
 1.2651E−183
 1.8593E−180


Hspa1b
2.15174286
9.330468231
793.0459723
 1.7539E−174
 2.3628E−171


Hspa8
0.696470563
12.33068176
751.3892978
 2.0013E−165
 2.4887E−162


Nfkbia
0.985907956
10.83334808
699.2477201
 4.3581E−154
 5.0323E−151


Gadd45b
1.286294082
9.727225725
674.2268837
 1.2033E−148
 1.2969E−145


H2afz
−1.07018428
10.76614048
664.4674558
 1.5951E−146
 1.6116E−143


Junb
0.793003216
11.89077788
658.8329868
  2.68E−145
 2.5485E−142


Ppp1r15a
1.114516956
9.595202536
607.3150774
 4.2927E−134
 3.8553E−131


Ifngr1
−0.797175635
11.1130316
606.1095339
 7.8512E−134
 6.6802E−131


Tnfaip3
0.803794065
10.12471168
549.5002817
 1.617E−121
 1.307E−118


Tagap
1.261551553
9.424665079
531.4945681
 1.336E−117
 1.0284E−114


Phlda1
1.400498169
9.440744496
524.7965068
 3.8283E−116
 2.8131E−113


Gramd3
1.16036844
10.20636507
497.1879766
 3.8888E−110
 2.7333E−107


Hsp90aa1
0.935956122
10.76861769
471.3892672
 1.5976E−104
 1.0761E−101


Fosb
1.329877314
9.41073207
435.298814
1.14187E−96
7.38381E−94


ler5
0.885845247
9.710298508
407.4325977
1.32736E−90
8.25311E−88


Tsc22d3
0.984645148
9.704342129
404.9225279
4.67066E−90
2.79652E−87


Hsp90ab1
0.633814222
11.19704142
400.9346148
3.44732E−89
1.99033E−86


Emb
−0.904301807
10.2510913
391.702411
3.52584E−87
1.96547E−84


Serpinb9
−1.366273321
9.858316986
378.3861841
2.79458E−84
1.50591E−81


Asb2
1.034237011
9.480724756
375.4102947
 1.2423E−83
6.47842E−81


Ramp3
−1.695838734
9.93719207
371.2181081
1.01619E−82
5.13367E−80


Bag3
1.280714683
9.20292133
370.6579391
1.34568E−82
6.59218E−80


Ostf1
−0.757739549
10.18398253
354.6784426
4.05846E−79
1.92968E−76


Ifng
1.390059422
9.686573599
352.8816351
9.99148E−79
4.61492E−76


Hsph1
1.120114423
9.472352373
351.0872604
2.45683E−78
1.10325E−75


Csrnp1
0.935572167
9.467362177
341.0348346
3.79755E−76
1.65922E−73


Ppp1cc
−0.712400694
10.14035428
333.4083474
1.73963E−74
7.40074E−72


Satb1
−1.050886834
9.757129414
330.9907931
 5.8478E−74
2.42399E−71


Sub1
−0.498310969
11.14885309
313.5062323
3.76209E−70
1.52045E−67


Atf3
1.255366092
9.293173328
311.0704066
1.27657E−69
5.03343E−67


Tnfrsf4
−0.886369845
10.622478
308.5109707
4.60895E−69
1.77401E−66


Dgat1
−1.090343512
9.778876472
305.9824441
1.63848E−68
6.15991E−66


Odc1
−0.912868376
10.45380252
294.6839137
4.74244E−66
1.74241E−63


Dnaja1
0.660328779
10.76356594
292.0198727
1.80488E−65
6.48395E−63


Hmgb2
−0.68462046
10.71173142
285.2036862
5.51645E−64
1.93867E−61


Tnfrsf9
−1.386299016
9.402138025
270.8266947
7.49438E−61
2.57775E−58


Abi3
0.939528469
9.334614155
254.4801334
2.74009E−57
9.22838E−55


Icos
−0.694823726
10.25651136
252.956149
5.88827E−57
1.94265E−54


Lmnb1
−0.796445565
9.781598082
235.4925917
3.78059E−53
1.22234E−50


Tpm4
−0.870737305
9.58004696
232.0124485
2.17005E−52
6.87863E−50


Gabpb1
−1.01277835
9.478116622
231.3253372
3.06417E−52
9.52602E−50


Il21r
−0.709656805
10.19619458
230.7497394
4.09108E−52
1.24786E−49


Actg1
−0.385352565
12.09967582
227.9718392
1.65067E−51
 4.9416E−49


Nfkb2
−0.872840303
9.521887809
227.4662535
2.12776E−51
6.25408E−49


Tra2b
0.566603683
9.814659783
225.7459621
5.04794E−51
1.45723E−48


Nr4a1
0.760017624
9.629880779
225.0326612
7.22249E−51
 2.0484E−48


Actb
−0.686498084
13.40455375
224.189125
1.10323E−50
3.07497E−48


Malat1
0.384658746
14.66845119
222.1869687
3.01551E−50
8.26249E−48


Crem
−0.929344412
10.06723454
221.6786464
3.89255E−50
1.04878E−47


Irf1
0.800988362
9.430944526
220.5435406
6.88374E−50
 1.8243E−47


S100a4
−1.124176336
9.866850446
220.2298465
8.05839E−50
2.10116E−47


Dnajb4
0.898452918
9.252159229
218.0567114
2.40034E−49
6.15935E−47


Eif4a2
0.587188346
9.723691704
215.5267639
8.55372E−49
2.16062E−46


Lgals1
−0.544772962
11.62803108
210.6664274
9.82814E−48
2.44433E−45


Vps37b
−0.567998001
10.60462455
208.2553343
3.29997E−47
8.08292E−45


Arpc2
−0.339096705
10.79502771
198.9781559
3.48999E−45
8.42077E−43


Ldha
−0.477227524
10.356303
198.1191431
5.37386E−45
1.27756E−42


Slc38a2
0.6945798
9.471310328
196.4081687
1.26965E−44
2.97467E−42


Rhoh
0.680272061
9.50146616
195.902854
1.63669E−44
3.77982E−42


Kcnk5
0.865065562
9.212048811
195.5640523
1.94048E−44
4.41827E−42


Cd47
−0.469147919
10.23587831
193.5887493
5.23627E−44
1.17569E−41


Cd28
0.462328972
10.37935338
193.379503
 5.8169E−44
1.28817E−41


Hspe1
0.62125485
10.275394
192.4921794
9.08574E−44
1.98487E−41


Tnfrsf18
−0.597638271
10.06784994
192.2396956
 1.0315E−43
2.22336E−41


Gadd45g
1.091498475
9.253008237
191.6702361
1.37329E−43
2.92114E−41


Sh2d2a
−0.665095634
9.846350864
191.0225578
1.90166E−43
3.99249E−41


Cd2
−0.492480832
10.31976175
186.0579796
2.30587E−42
4.77907E−40


Ccdc117
0.815294707
9.229125118
181.8435023
1.91832E−41
 3.9255E−39


mt-Nd1
−0.358612694
11.14922829
179.4352069
6.43782E−41
1.30092E−38


Prelid1
−0.628281747
9.693861972
176.724491
2.51555E−40
5.02053E−38


Ptp4a2
−0.517215133
9.957507214
175.4580103
4.75543E−40
9.37515E−38


Btg2
0.440636277
10.53755263
170.6805646
5.25444E−39
1.02341E−36


Rplp0
−0.21033764
12.38791457
169.8702747
7.89769E−39
1.51993E−36


Rora
−0.613089505
9.982326095
165.5083791
7.08364E−38
1.34723E−35


Cytip
−0.464571312
10.18852324
164.5920026
1.12315E−37
2.11126E−35


Ywhae
−0.599038836
9.677391704
163.9902312
1.52018E−37
2.82474E−35


Dusp2
0.836057215
9.446119208
163.7671751
1.70068E−37
3.12424E−35


Gm8797
0.673519794
9.41752959
163.683435
1.77385E−37
3.22203E−35


Txnip
0.67807196
9.461611552
163.1794609
2.28568E−37
4.06048E−35


Crip1
−0.565568902
11.66680939
163.1805573
2.28442E−37
4.06048E−35


Zeb1
−0.876726155
9.368997506
162.7540564
2.83107E−37
4.97469E−35


Xbp1
−0.711218017
9.544485173
161.4373091
5.49063E−37
9.54425E−35


Orai1
−0.579250032
9.884591795
160.2159281
1.01501E−36
 1.7456E−34


Kdm6b
−0.863501587
9.740079571
155.8597275
 9.0849E−36
1.54596E−33


Serpinb6b
−0.806046844
9.622270494
153.802115
2.55844E−35
 4.3083E−33


Rps27l
−0.691596722
9.542736211
153.7031579
2.68906E−35
4.48159E−33


S100a6
−0.604109019
10.99650705
153.6377922
2.77898E−35
4.58419E−33


Rbm3
−0.359226464
10.73120229
152.3012466
5.44486E−35
8.89107E−33


Pnrc1
0.353791235
10.57762445
151.8347313
6.88568E−35
1.11314E−32


Osgin1
0.824202552
9.241883295
149.9615518
1.76752E−34
2.82908E−32


Ppp1r16b
−0.763243765
9.488059972
148.3650029
 3.9477E−34
6.25671E−32


Jund
0.404038488
11.83352068
147.7973495
5.25327E−34
8.24508E−32


Dnajb6
−0.461679658
10.02357702
146.7975356
8.68943E−34
 1.3507E−31


Mns1
0.755135013
9.25079002
146.6385192
9.41355E−34
1.44933E−31


Rhob
0.74975205
9.186759187
145.176197
1.96535E−33
2.99735E−31


Rps26
−0.284540248
10.99419139
142.8574902
6.31524E−33
9.54133E−31


Amica1
0.785928661
9.335185757
138.7221207
 5.066E−32
7.58305E−30


Cd3g
0.261967409
11.10926437
138.1653066
6.70559E−32
9.94519E−30


Maff
0.743744556
9.305178125
136.9026641
1.26643E−31
 1.8612E−29


Bcl2a1d
−0.556400874
9.947971478
135.9736136
 2.022E−31
2.92191E−29


Cxcl10
1.022791565
9.358380139
135.9713164
2.02434E−31
2.92191E−29


mt-Co2
−0.245307237
11.3867395
134.1830298
 4.9824E−31
7.12791E−29


Ndufa4
−0.533333906
9.735537154
132.5007031
1.16265E−30
1.64873E−28


Got1
−0.718746583
9.85597876
130.9493044
2.54011E−30
3.57073E−28


mt-Co1
−0.214636506
12.2154689
130.618136
3.00128E−30
4.18265E−28


Gch1
−0.741103157
9.459479195
128.8681559
7.24762E−30
9.96255E−28


Stmn1
−1.367904009
9.430748828
128.8615105
7.27193E−30
9.96255E−28


Serpinb1a
−1.211789733
9.512634009
128.4498585
8.94794E−30
1.21557E−27


Zfp3612
0.548721708
9.813907288
127.2191653
 1.6635E−29
2.24102E−27


Samsn1
−0.60534197
9.795514419
124.3876645
 6.9293E−29
9.25777E−27


Cacybp
0.534106834
9.501045641
123.654719
1.00256E−28
1.32847E−26


Bcl11b
0.557187574
9.518363932
123.2267919
1.24387E−28
1.63483E−26


Nab1
−0.638659495
9.481607755
122.2066184
2.08007E−28
2.71181E−26


Eif4a1
−0.326967555
10.43982044
119.198664
9.47487E−28
1.22537E−25


Ctsw
0.420268747
9.943491723
118.6678023
1.23823E−27
1.58867E−25


Manf
−0.503781652
9.719597578
116.9764749
2.90493E−27
3.69772E−25


Sit1
0.594504365
9.400129387
116.683346
3.36762E−27
 4.2532E−25


Ahr
0.665620939
9.32837131
116.5385822
3.62263E−27
 4.5398E−25


Dnaja4
0.702154245
9.306294868
116.2943522
4.09737E−27
5.09524E−25


Rasgrp1
0.54719873
9.4876411
115.5982599
5.82026E−27
7.18247E−25


Rpl28
−0.277273945
10.72583795
114.4206894
1.05399E−26
1.29081E−24


Tnf
0.657378601
9.19510683
113.7154721
1.50415E−26
1.82828E−24


Map2k3
−0.639195811
9.403893144
112.180806
3.26167E−26
3.93493E−24


Bcl2a1b
−0.401042562
10.39223313
111.0495442
5.77103E−26
 6.9107E−24


mt-Co3
−0.206451547
12.09928666
110.9099873
6.19193E−26
 7.3602E−24


Ddit3
0.600713605
9.375996145
110.3339779
8.27972E−26
9.77007E−24


Arpc5
−0.375095913
10.09994462
110.1520132
9.07572E−26
1.06317E−23


Anxa2
−0.551214664
9.842703511
109.8227857
1.07155E−25
1.24623E−23


Tbx21
0.633815107
9.277654988
107.7502756
 3.0487E−25
3.52038E−23


Hspa5
−0.331253095
10.97868219
106.0074139
7.34599E−25
8.42235E−23


Gm26740
−0.5631075
9.658905522
105.6525046
8.78684E−25
1.00034E−22


Hspd1
0.522874198
9.781160578
105.5573721
9.21897E−25
 1.0422E−22


Egr1
0.693243113
9.204622648
105.294982
1.05242E−24
1.18149E−22


Arpc3
−0.300445815
10.54021802
104.3124691
1.72798E−24
1.92652E−22


Slc25a5
−0.317657126
10.39410861
102.9141475
3.49991E−24
3.87531E−22


Slc25a19
−0.671198564
9.304164557
102.4999831
4.31371E−24
4.74391E−22


Arf5
−0.355950623
9.981776324
102.4262272
4.47735E−24
4.89059E−22


P2ry10
−0.542627996
9.588148813
100.0926173
1.45435E−23
1.57792E−21


Tiparp
0.622859048
9.253508946
99.43211855
2.03003E−23
2.18784E−21


Dapk2
0.629735843
9.267212724
99.37047465
2.09422E−23
2.24206E−21


Srgn
−0.248081982
11.37107818
98.58322616
3.11648E−23
3.31454E−21


S1pr4
−0.599660571
9.466039302
98.42214907
3.38057E−23
3.57191E−21


Prdx1
−0.402768256
9.945248275
98.10603607
3.96568E−23
4.16294E−21


Mif4gd
−0.554622287
9.488410444
97.43644609
5.56129E−23
5.80025E−21


Pyhin1
0.625926041
9.241802634
97.31544236
5.91175E−23
6.12624E−21


Atp2b1
−0.577740061
9.529038489
96.38102805
 9.4771E−23
9.75839E−21


Klf4
0.785414982
9.240042515
95.6473965
 1.3728E−22
 1.4046E−20


Kdm2b
−0.590418174
9.446725658
95.06884645
1.83878E−22
1.86954E−20


Gpr34
0.643868069
9.256515481
94.58899127
2.34318E−22
2.36749E−20


Ddx5
0.222201788
11.19915484
94.33581499
2.66288E−22
 2.6738E−20


Dedd2
0.548833108
9.289954935
93.22117023
4.67652E−22
4.66671E−20


Gngt2
0.563130652
9.363419251
92.71645706
6.03496E−22
5.98535E−20


Ptger4
0.593740113
9.344615159
92.63473731
6.28938E−22
6.19964E−20


Rap1b
−0.323870206
10.11242022
92.0761552
8.34043E−22
 8.1716E−20


Ndfip1
−0.453916191
9.658016099
91.91248652
9.05956E−22
 8.8227E−20


Pmaip1
0.569597424
9.419279032
91.40457314
1.17106E−21
1.13361E−19


Ass1
−0.570778569
9.534401383
91.02169791
1.42105E−21
1.36742E−19


mt-Nd4
−0.283267739
10.50324563
89.83638465
2.58693E−21
2.47457E−19


Stat4
−0.539139242
9.506546131
89.82057516
2.60768E−21
2.47975E−19


Zfand2a
0.571863902
9.203483651
89.75384762
2.69713E−21
2.54982E−19


Peak1
0.543559655
9.307893678
89.44490698
3.15298E−21
2.96343E−19


Ube2c
−0.73303176
9.233537011
89.11225779
3.73032E−21
 3.4858E−19


Klc1
−0.689120968
9.658425271
89.02069137
3.90705E−21
3.62996E−19


Ccnb2
−0.590326734
9.212369085
88.83145927
4.29924E−21
3.97152E−19


Kras
−0.549993886
9.430506668
88.81040425
4.34525E−21
3.99121E−19


Atf4
0.472417228
9.430489091
88.68127167
4.63836E−21
4.23637E−19


Tbc1d10c
0.461521425
9.522565087
88.25782723
5.74554E−21
5.21812E−19


S1pr1
−0.676389037
9.290347327
87.8844838
6.93909E−21
6.26689E−19


Oaz1
−0.179343623
11.23129158
87.66043355
7.77135E−21
6.97954E−19


Mkrn1
−0.435496851
9.625707011
86.99298233
1.08907E−20
9.72701E−19


Mpc1
−0.482130101
9.498929683
86.81722357
1.19028E−20
1.05726E−18


Cwc15
−0.440746307
9.591066965
86.59722366
1.33034E−20
 1.1752E−18


Yeats4
−0.576896023
9.335828716
86.0310623
1.77131E−20
1.55625E−18


Zc3hav1
−0.453828247
9.665187247
85.82752191
1.96335E−20
1.71565E−18


Mxi1
−0.615229665
9.308272849
85.48875372
2.33023E−20
 2.0253E−18


Gna13
−0.394257142
9.985132901
85.39771314
2.44003E−20
2.10938E−18


Eno1
−0.376092563
9.94247872
85.37363547
2.46992E−20
2.12387E−18


Metap2
−0.532246668
9.437215686
84.64093112
3.57781E−20
3.06026E−18


Cd53
−0.276565437
10.54705579
84.11975064
4.65695E−20
3.96233E−18


H3f3a
−0.262916696
10.34162816
84.03680502
4.85649E−20
4.11047E−18


Chmp4b
−0.386119126
9.755857713
83.79332771
5.49299E−20
4.62498E−18


Rgcc
0.655205768
9.563495027
82.72779326
9.41678E−20
7.88765E−18


Fam189b
0.494624586
9.381139083
82.68518295
9.62198E−20
8.01799E−18


Srp9
−0.371205013
9.749456535
82.04588879
1.32963E−19
 1.1023E−17


Myl12a
−0.241036233
10.67854662
81.89353345
1.43618E−19
1.18456E−17


Ube2d2a
−0.380758113
9.705617285
81.87867272
1.44702E−19
1.18744E−17


Rcbtb2
0.554113844
9.398942766
81.83643178
1.47828E−19
1.20697E−17


C1d
−0.55506624
9.33962429
81.52340884
1.73198E−19
1.40699E−17


Cenpa
−0.644600095
9.394732697
81.06499933
2.18414E−19
1.76544E−17


Rps2
−0.182975709
11.63596206
80.5615055
2.81796E−19
2.26642E−17


Rab2a
−0.405486929
9.638428497
80.08770238
3.58155E−19
 2.8663E−17


Rps17
−0.253525207
10.61527996
79.99091046
3.76136E−19
2.99538E−17


Crbn
−0.45331621
9.708110897
79.55964126
4.67886E−19
3.70777E−17


Evl
0.449484781
9.48202136
79.48943941
 4.8481E−19
3.82314E−17


Atp1b3
−0.525675487
9.413041736
79.31700201
5.29025E−19
4.15156E−17


Birc5
−0.803153176
9.251717708
78.81955099
6.80503E−19
 5.3145E−17


Pelo
0.534389282
9.234977676
78.7693748
6.98008E−19
 5.425E−17


Ube2b
−0.340873439
9.912296976
78.67640507
7.31642E−19
 5.6592E−17


Slc25a3
−0.335596538
9.94973675
78.52605368
7.89501E−19
6.07765E−17


Gimap9
0.414105757
9.580964503
77.89866942
1.08464E−18
8.31012E−17


Gbp8
0.519003936
9.225073835
77.70588153
1.19585E−18
 9.1189E−17


Sash3
0.526717574
9.280790532
76.92431049
1.77637E−18
1.34821E−16


Nfkb1
−0.482750495
9.537095283
76.9019338
1.79661E−18
 1.3572E−16


Tgfb1
−0.436908782
9.751104871
76.52399621
2.17553E−18
 1.6358E−16


Gm19585
−0.589333363
9.333697403
76.49300801
2.20994E−18
1.65398E−16


2810417H13Rik
−1.137160497
9.337791148
76.28397891
2.45669E−18
1.83018E−16


Erh
−0.391194693
9.741401362
75.75485582
 3.2116E−18
 2.3816E−16


Nabp1
−0.474933711
9.632410427
75.07324761
4.53571E−18
3.34814E−16


H3f3b
−0.183055632
12.3442719
75.06348853
4.55818E−18
3.34944E−16


Tra2a
0.437013456
9.420550179
74.87618174
 5.0118E−18
 3.6661E−16


Rpl4
−0.145002236
11.68907687
74.81745426
5.16312E−18
3.75978E−16


Reep5
−0.410263139
9.63723477
74.70029247
 5.4788E−18
3.97176E−16


ler2
0.372614919
9.828501111
74.64201981
5.64293E−18
4.07248E−16


Abcb1b
−0.617002181
9.297095714
74.45737621
6.19617E−18
4.45188E−16


Atp5a1
−0.343731345
9.817876037
74.34844531
6.54768E−18
4.68362E−16


Pfn1
−0.208967825
12.14558871
74.16052907
7.20159E−18
5.12868E−16


Madd
−0.529984212
9.387287048
74.00633058
7.78669E−18
5.52104E−16


Tomm20
−0.285577806
10.023749
73.94492556
8.03272E−18
5.67061E−16


Cmas
−0.523719597
9.365634653
73.92293145
8.12272E−18
5.70921E−16


Cdca3
−0.440059827
9.19681312
73.80929833
8.60403E−18
6.02133E−16


Cd226
0.541531319
9.268561012
73.70228655
9.08336E−18
6.32938E−16


Stk4
−0.531488797
9.393563986
73.65355009
9.31042E−18
6.45976E−16


Cript
−0.418219478
9.556480747
73.60266337
9.55357E−18
6.60013E−16


Lztfl1
0.516188841
9.420902233
73.17831763
 1.1845E−17
8.14834E−16


Cox5b
−0.29984058
10.04351529
72.98093175
1.30909E−17
8.96723E−16


Snrpe
−0.339808137
9.827473175
72.71911464
1.49479E−17
1.01961E−15


Rps3a1
−0.144846919
11.67403179
72.62804541
1.56539E−17
1.06328E−15


Gpx4
−0.322618499
10.07619191
71.72461952
2.47426E−17
1.67359E−15


Lcp1
0.267873223
10.29111652
70.77546944
4.00283E−17
2.69624E−15


Gramd1a
0.428949158
9.45882935
70.50743203
4.58536E−17
 3.0758E−15


Rpl22l1
−0.227855341
10.87577052
70.42828761
4.77306E−17
3.18848E−15


Carnmt1
−0.533340181
9.382599136
70.14896737
5.49908E−17
3.65836E−15


Fam78a
0.483182295
9.208922936
69.96525619
6.03583E−17
3.99898E−15


Itk
−0.384569882
9.814381707
69.34499645
8.26621E−17
5.45435E−15


Sirt7
0.451348242
9.346429512
69.25139271
8.66797E−17
 5.6962E−15


Lpar6
0.50184775
9.25603568
69.13687452
9.18617E−17
6.01229E−15


Podnl1
0.465684375
9.399826176
69.07032239
9.50144E−17
6.19356E−15


Cd27
−0.693527396
9.342790688
69.00506198
 9.8211E−17
6.37622E−15


Il1r2
−0.769598989
9.256734057
68.4351569
1.31119E−16
8.47868E−15


Rpl31
−0.198288808
10.87174216
68.22727856
1.45696E−16
9.38377E−15


Ube2a
−0.430232394
9.476224302
68.15744891
1.50948E−16
9.68345E−15


Il2rg
0.284318296
10.13321138
68.10803166
1.54779E−16
9.88995E−15


Btf3
−0.188936964
10.71562669
67.84995712
1.76422E−16
1.12285E−14


Flna
−0.543132079
9.271089863
67.71229144
1.89181E−16
1.19933E−14


Ostc
−0.417712022
9.507638046
67.39567345
2.22136E−16
1.40275E−14


Nap1l1
−0.446817289
9.497843766
67.25802126
 2.382E−16
1.49834E−14


Gm26532
0.539119111
9.298825204
67.17554702
2.48376E−16
 1.5563E−14


Rassf5
0.40289647
9.456960458
67.14089843
 2.5278E−16
1.57598E−14


Psmd6
−0.511849794
9.309065396
67.13554255
2.53467E−16
1.57598E−14


Slc39a1
−0.517971835
9.215123658
66.93618839
2.80439E−16
 1.737E−14


Sipa1
0.445171877
9.377580607
66.78277931
3.03135E−16
1.87041E−14


Rpl24
−0.138569497
11.77231724
66.27823268
3.91559E−16
2.40682E−14


Plk3
0.492663873
9.37620264
66.21240355
4.04857E−16
2.47913E−14


1500009L16Rik
−0.568387028
9.247088485
65.79956575
4.99192E−16
3.04526E−14


Arf4
−0.322744466
9.97486799
65.76286864
5.08574E−16
3.09083E−14


Ccr7
−0.852512495
9.2731796
65.71215821
 5.2183E−16
3.15507E−14


Hmgb1
−0.289258843
10.29717658
65.70756036
5.23048E−16
3.15507E−14


Psmb5
−0.408420536
9.522708713
65.65722349
5.36579E−16
3.22466E−14


Zfp3611
0.437347092
9.536424792
65.53388802
5.71232E−16
 3.4202E−14


Rsrp1
0.294708181
10.00255998
65.36956236
6.20905E−16
3.70389E−14


Ccnd3
0.392403552
9.527397103
64.82584356
 8.1819E−16
4.86282E−14


Etf1
−0.44463723
9.430618507
64.09079524
1.18815E−15
7.03578E−14


Rpl37a
0.122987072
12.61564076
63.93640264
1.28501E−15
7.58157E−14


Gapdh
−0.237914704
10.5624293
63.49863181
1.60478E−15
9.43379E−14


St3gal6
0.467788849
9.290007328
63.39446236
1.69193E−15
9.91005E−14


Stat3
−0.427360634
9.627931004
63.34309522
1.73663E−15
1.01352E−13


Capza2
−0.336100212
9.686699536
63.08839131
1.97635E−15
1.14927E−13


Aim1
−0.518130757
9.317849014
62.96031012
2.10914E−15
1.22209E−13


4930503L19Rik
0.477664395
9.217221064
62.90849567
2.16536E−15
1.25019E−13


Ptpn22
−0.320448302
10.0931864
62.87594088
2.20145E−15
 1.2665E−13


Isy1
−0.489261775
9.388853979
62.86177423
2.21734E−15
1.27112E−13


Dcun1d5
−0.394885964
9.525965055
62.63746655
2.48481E−15
1.41942E−13


Sys1
−0.391713519
9.549646283
62.46696151
2.70952E−15
1.54233E−13


Cox6a1
−0.247773288
10.15026993
62.43173845
2.75842E−15
1.56465E−13


Hif1a
−0.36303621
9.774226901
62.23603398
3.04662E−15
1.72209E−13


Dennd4a
−0.506038575
9.353170513
61.80891426
3.78457E−15
2.13176E−13


Ermn
−0.670779521
9.304666665
61.78992983
3.82124E−15
2.14493E−13


Pglyrp1
−0.581505876
9.331204063
61.76551296
3.86891E−15
2.16418E−13


Smad7
0.432811456
9.374760348
61.6967973
4.00631E−15
2.23331E−13


Emp3
−0.353830378
9.864716413
61.4528883
4.53465E−15
2.51914E−13


Mif
−0.336814609
9.843573442
61.40913837
4.63654E−15
2.56693E−13


Ncl
−0.277240909
10.07288653
61.28557928
4.93683E−15
2.72385E−13


Tax1bp1
−0.346224474
9.700820891
61.18575971
5.19358E−15
2.85576E−13


Gm11808
0.267683291
10.17414513
61.10326802
5.41582E−15
2.96787E−13


Tnip1
−0.466236205
9.396423421
61.03989719
5.59298E−15
 3.0546E−13


Il2rb
−0.377545771
9.646395321
60.97710191
5.77425E−15
3.14298E−13


Selk
−0.25836491
10.04778191
60.88064076
6.06423E−15
3.28974E−13


mt-Atp6
−0.143668358
12.47117091
60.56120241
 7.1326E−15
3.85638E−13


Rpl32
−0.118637876
12.44744241
60.38463939
7.80194E−15
4.20421E−13


Uap1
−0.479451457
9.373416437
60.17826839
8.66436E−15
4.65342E−13


B2m
0.104190832
12.79985088
60.16460126
8.72473E−15
4.67033E−13


Ubl3
−0.402699619
9.565973366
59.28291636
1.36557E−14
7.28574E−13


Cd160
0.664206821
9.334737973
59.26672523
1.37685E−14
7.32177E−13


Nfkbid
0.548241659
9.347248926
59.24549012
1.39179E−14
7.37694E−13


Sdhb
−0.373471788
9.57477766
59.140164
1.46831E−14
7.75712E−13


Cd40lg
0.434709702
9.469009802
59.079041
1.51464E−14
7.97579E−13


Ccl4
1.216184948
9.567139597
59.07002117
 1.5216E−14
7.98642E−13


Ifi203
0.397729022
9.466695884
59.02071419
1.56021E−14
8.16257E−13


Hsp90b1
−0.360458376
9.704110499
58.95054865
1.61685E−14
 8.4316E−13


Atp5f1
−0.298472638
9.82228089
58.8189421
1.72869E−14
8.98585E−13


Ms4a6b
0.26638962
10.19482982
58.69772529
1.83854E−14
9.52623E−13


Ell2
−0.499117657
9.233861253
58.59765846
1.93447E−14
9.99124E−13


Rps27
0.130528567
13.23482143
58.50543285
 2.0273E−14
1.04374E−12


Pin1
−0.459464991
9.345121381
58.32632468
2.22053E−14
1.13959E−12


Nmrk1
−0.50895163
9.47064308
58.21551447
2.34919E−14
 1.2018E−12


Ccna2
−0.39001523
9.193845605
58.12778027
2.45633E−14
1.25265E−12


Ube2j2
−0.376431055
9.513342518
58.03685007
2.57253E−14
1.30779E−12


Rpl38
0.138662549
11.67460466
58.0220768
2.59193E−14
1.31351E−12


Uqcrfs1
−0.314965169
9.7148766
57.9988405
2.62272E−14
1.32497E−12


Rasgrp4
0.436494297
9.196048428
57.85877003
2.81629E−14
1.41832E−12


Gm4955
0.499775199
9.225196819
57.61657645
 3.1853E−14
1.59918E−12


Pik3r1
−0.45075266
9.484798888
57.58402923
3.23844E−14
1.62083E−12


Tuba4a
0.431200046
9.389388654
56.87585494
4.64211E−14
2.31618E−12


Smarce1
−0.408252588
9.44121571
56.75737258
4.93039E−14
2.45245E−12


Rac1
−0.27734301
9.864108042
56.73130979
4.99617E−14
2.47755E−12


Nfkbiz
0.364141505
9.633378704
56.64467691
 5.2212E−14
2.58122E−12


Rpl7
−0.145513172
11.2121183
56.47267357
5.69848E−14
2.80859E−12


Tm2d2
−0.487628577
9.29650158
56.43314473
 5.8142E−14
2.84825E−12


Prkar1a
−0.244526548
10.1098473
56.43460194
5.80989E−14
2.84825E−12


Hn1
−0.290730748
9.912834007
56.21069494
6.51064E−14
3.17979E−12


Vimp
−0.385693308
9.528415566
56.17137881
6.64214E−14
3.23424E−12


Il12rb1
0.457617355
9.249603528
56.07279355
6.98368E−14
3.39034E−12


Sar1a
−0.38919719
9.487454256
55.83677354
7.87447E−14
3.81134E−12


Rgs3
0.445767105
9.212312097
55.42399885
9.71432E−14
4.68781E−12


H2afx
−0.53405617
9.351667018
55.39133439
9.87709E−14
4.75217E−12


Fam46a
−0.593104785
9.504386119
54.85249022
1.29924E−13
 6.2325E−12


Unc50
−0.463482394
9.291047169
54.8152367
 1.3241E−13
6.33297E−12


Psmb6
−0.315898886
9.664543895
54.5840988
1.48936E−13
7.10235E−12


Relb
−0.416261884
9.473543412
54.39215697
1.64217E−13
7.80803E−12


Areg
−0.981677364
9.386135347
54.37400443
1.65741E−13
7.85739E−12


Nusap1
−0.478892551
9.207262276
54.2609206
1.75559E−13
8.29849E−12


Dnajb11
−0.399861357
9.443671568
54.13350774
 1.8732E−13
8.82859E−12


Rpl8
−0.128862907
11.65232029
54.1236023
1.88266E−13
8.84742E−12


Psmb4
−0.368425685
9.512666637
54.07411222
1.93068E−13
9.04679E−12


Pfdn5
0.183243053
10.55366333
53.80238941
2.21703E−13
1.03585E−11


Pdia6
−0.405605687
9.493421923
53.74006008
2.28849E−13
1.06616E−11


Tdg
−0.465092218
9.267189123
53.56871386
2.49704E−13
1.15998E−11


Rasgrp2
−0.474109476
9.377109112
53.28818106
2.88034E−13
 1.3342E−11


Chordc1
0.43790998
9.243519132
53.22033495
2.98156E−13
1.37714E−11


Eomes
−0.676427393
9.215474018
52.88113851
3.54356E−13
1.63206E−11


Riok1
−0.482947013
9.379980367
52.86480692
3.57315E−13
1.64101E−11


Mrpl43
−0.430748788
9.347336785
52.85289924
3.59488E−13
1.64631E−11


B930036N10Rik
0.476518913
9.189748854
52.78752614
3.71654E−13
1.69722E−11


Snrpd1
−0.387511242
9.480040942
52.74552695
3.79687E−13
1.72902E−11


Rps27rt
0.21726945
11.16206124
52.6596686
3.96653E−13
1.80121E−11


Tnfrsf25
−0.507674416
9.258889745
52.54427375
4.20657E−13
1.90486E−11


Capzb
−0.237573376
10.15899344
52.46292909
4.38447E−13
1.97987E−11


Cks1b
−0.578941254
9.261808188
52.11841755
5.22525E−13
2.34643E−11


Eif1
−0.13433723
11.85889558
52.12359736
5.21149E−13
2.34643E−11


Psmb2
−0.31086955
9.69395085
52.03727219
5.44571E−13
2.43865E−11


Fnta
−0.448658046
9.225372599
51.97384086
 5.6245E−13
2.51176E−11


Cisd2
−0.391653223
9.458300452
51.95684696
5.67339E−13
2.52661E−11


Cirbp
−0.312038116
9.821586015
51.83115822
6.04843E−13
2.68623E−11


Cdc25b
−0.45061542
9.220519401
51.78564824
6.19026E−13
2.74169E−11


Ndufb9
−0.334018339
9.600272915
51.60840143
 6.7751E−13
2.99252E−11


Rps8
−0.135138035
11.5927656
51.58476284
6.85717E−13
3.02052E−11


Tmem165
−0.454708653
9.262410636
51.47792094
7.24068E−13
3.18079E−11


Acot9
−0.455587461
9.289681303
51.33930244
7.77043E−13
3.40425E−11


Gna15
−0.42915867
9.413846476
51.31381614
7.87197E−13
3.43941E−11


Batf
−0.397304061
9.653588452
51.22533009
8.23491E−13
3.58829E−11


Marcksl1
−0.536219973
9.352514486
51.11147635
8.72666E−13
3.79234E−11


Cd4
0.302355981
9.643165705
51.0304068
9.09462E−13
3.94165E−11


Fosl2
−0.454425467
9.531626337
50.9750422
9.35479E−13
4.04357E−11


Bcl211
−0.502971673
9.333332611
50.85441484
9.94773E−13
 4.2884E−11


mt-Cytb
−0.182059117
11.07879142
50.36934489
1.27368E−12
5.47616E−11
















TABLE 3F







LPL−5 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Tnfrsf4
1.093522489
10.62226106
635.4400281
 3.2785E−140
  5.3E−136


Tgfb1
0.975322652
9.751061303
520.2631269
 3.7093E−115
 2.9982E−111


Bcl2a1b
0.780135087
10.39216426
514.3928564
 7.022E−114
 3.7839E−110


Bcl2a1d
0.89577233
9.947939732
466.5419171
 1.8125E−103
 7.3252E−100


Rpl13a
−0.326086663
13.13152047
458.393353
 1.0753E−101
3.47664E−98


Furin
1.083121158
10.3814011
438.3306291
2.49901E−97
6.73315E−94


Fam110a
1.071979962
9.494271745
431.7915513
6.62154E−96
1.38439E−92


Srgn
0.499629456
11.37085449
431.7236111
6.85087E−96
1.38439E−92


Re
1.088827341
9.441983899
426.4493209
9.63164E−95
1.73006E−91


Ctla4
0.839377678
10.15303035
392.4986426
2.36551E−87
3.82408E−84


Id2
0.802587697
10.64561455
386.6248147
4.49435E−86
6.60507E−83


Mmd
1.251992193
9.302839885
381.7863212
5.08222E−85
 6.8466E−82


Cxcr6
0.819984404
10.3899312
377.6613434
4.01909E−84
4.99789E−81


Tnfrsf9
1.354848987
9.402019905
371.2362656
1.00698E−82
1.16278E−79


Rplp0
−0.336949142
12.38776356
370.2741409
1.63119E−82
1.75799E−79


Areg
2.120364333
9.386124375
352.1899639
1.41334E−78
1.42801E−75


Rps18
−0.319352603
12.47332519
347.6549277
1.37346E−77
1.30608E−74


Lag3
1.647526397
9.272200366
346.4561421
2.50539E−77
2.25012E−74


Sdf4
0.666738475
9.917375756
342.4166661
1.89919E−76
1.61591E−73


Hspa5
0.561489025
10.97852902
331.228038
5.19183E−74
4.19656E−71


Rpl32
−0.302417146
12.44734872
330.2768468
8.36546E−74
6.43981E−71


Ehd1
0.91198395
9.471470346
322.9608951
3.28068E−72
 2.4107E−69


Bhlhe40
0.560219792
10.72354665
318.8827651
2.53665E−71
1.78293E−68


Penk
2.37977032
9.250280046
318.735219
2.73149E−71
1.83989E−68


Gadd 45b
1.002640146
9.727336037
316.7675708
7.32834E−71
4.73879E−68


Il21r
0.742031608
10.19622389
314.7885445
1.97741E−70
 1.2295E−67


Stat3
0.825967681
9.627915766
310.4807593
1.71591E−69
1.02739E−66


Dusp14
1.311493662
9.241607784
302.6348425
8.78489E−68
5.07202E−65


Actb
−0.868840136
13.40497483
291.6698206
 2.1514E−65
1.19929E−62


Nmrk1
0.997099834
9.470696344
289.2668478
7.18297E−65
3.87066E−62


Plscr1
0.963349071
9.521574474
285.8877732
3.91377E−64
2.04097E−61


Rps19
−0.329912744
12.57926811
282.5048755
2.13673E−63
1.07945E−60


Rora
0.701354189
9.982410898
271.7577505
4.69699E−61
2.30096E−58


Klf2
−1.613268488
9.960790759
267.4297392
4.12189E−60
1.95984E−57


Capg
0.78217281
9.809382216
267.1893548
4.65038E−60
2.14795E−57


Rpl29
−0.371532652
11.21426477
265.936218
8.72202E−60
3.91667E−57


Junb
0.563013782
11.89122367
260.4847643
1.34539E−58
5.87828E−56


Odc1
0.760576176
10.45354943
252.8701509
6.14801E−57
2.61549E−54


Tnfrsf18
0.61336575
10.06773107
249.7951843
 2.878E−56
1.19297E−53


Rps5
−0.27022034
12.08886363
247.3691807
9.72734E−56
 3.9313E−53


Stx11
0.844497
9.44438744
243.9575398
 5.3928E−55
2.12634E−52


H2-D1
0.267762308
12.28190082
240.4816947
3.08798E−54
1.18858E−51


Ostf1
0.551472516
10.1838504
238.6389317
7.78902E−54
2.92831E−51


Ermn
1.23629042
9.304608573
238.0447323
1.04966E−53
3.85654E−51


Rpl18
−0.274617166
11.80689186
230.9705444
3.66172E−52
1.31545E−49


Rpl18a
−0.230919204
12.8427361
230.9237523
3.74877E−52
1.31745E−49


Ece1
0.949006386
9.199067932
228.403278
1.32913E−51
4.57163E−49


Gem
1.164414567
9.368386927
225.2504315
6.47426E−51
2.18048E−48


Rpl13
−0.237763931
12.637725
222.4024543
 2.7062E−50
8.92825E−48


Fam46a
1.075761036
9.504325402
218.6210206
1.80792E−49
5.84536E−47


Rps11
−0.249263758
12.26305424
217.0901119
3.90053E−49
1.23639E−46


Cd82
0.515694291
10.12752586
216.2520302
5.94214E−49
1.84732E−46


Ccl20
1.571767244
9.175986718
215.708926
 7.8058E−49
2.38092E−46


Rps6
−0.236751525
12.20838346
214.0506452
1.79543E−48
5.37499E−46


Tnfsf11
1.000729109
9.5470138
208.7598636
2.56113E−47
7.52787E−45


Rpl10a
−0.334028709
11.1421834
206.6183549
7.51057E−47
2.16814E−44


Rps4x
−0.25351799
11.84794571
203.2452547
4.08952E−46
1.15985E−43


H2-K1
0.310569301
11.6099805
199.5324875
2.64152E−45
7.36256E−43


Gramd3
−0.754266192
10.20642813
194.9036165
2.70425E−44
7.40965E−42


Vgll4
0.685758581
9.732056241
192.3735559
9.64387E−44
2.59838E−41


Rps10
−0.298690801
11.22180355
192.3216417
 9.8988E−44
2.62334E−41


Zeb2
1.004261208
9.266619145
189.0385742
5.15457E−43
1.34401E−40


Rps7
−0.249396851
11.94311863
188.1593636
8.01885E−43
2.05766E−40


Rpl14
−0.247313373
11.87703907
187.7451879
9.87468E−43
2.49428E−40


Rps16
−0.223372261
12.35139052
184.4010715
5.30335E−42
1.31898E−39


B2m
0.192848994
12.79982102
184.2318403
5.77425E−42
1.41434E−39


Rps3
−0.216536407
11.96705851
183.2730085
9.35028E−42
2.25607E−39


Rpl8
−0.253480179
11.65218841
179.8911834
5.11893E−41
1.21695E−38


Foxp3
0.625482423
9.163304427
179.8254281
5.29099E−41
1.23962E−38


H3f3b
0.284663226
12.34435911
173.7735014
 1.1093E−39
2.56184E−37


Timp2
0.802832395
9.295781647
172.1120915
2.55788E−39
5.82405E−37


Ikzf2
1.073873069
9.298841109
170.9085501
4.68525E−39
1.05197E−36


Ddx5
0.316171351
11.19923668
169.5222404
9.40838E−39
 2.0835E−36


Ly6e
0.358526245
10.76648585
169.4937633
9.54409E−39
 2.085E−36


Cdkn1a
0.806219522
9.693178201
169.0570774
1.18881E−38
2.56245E−36


Trps1
0.845530208
9.247854818
163.5175317
1.92824E−37
4.10156E−35


Orai1
0.526678565
9.884604613
162.1675472
3.80264E−37
7.98356E−35


Tmsb10
−0.244760928
12.94245948
160.4130676
9.19176E−37
1.90505E−34


Rpsa
−0.258005375
11.60010538
160.3539494
9.46924E−37
1.93772E−34


Zfp36l2
−0.788376864
9.814128538
159.4437221
1.49689E−36
3.02484E−34


Klf3
−0.990105413
9.422133449
159.1328844
1.75027E−36
 3.4932E−34


Itm2b
0.315828579
10.97659894
158.3293848
2.62222E−36
5.16961E−34


Marcksl1
0.883574181
9.352455125
155.3767044
1.15844E−35
 2.2563E−33


Ndfip1
0.526351822
9.657958285
154.7210113
1.61125E−35
3.10088E−33


Rps28
−0.295632581
11.7074328
154.5592024
1.74792E−35
3.32434E−33


Tnfsf8
0.870087777
10.01785574
153.9305856
2.39827E−35
 4.5082E−33


Rpl35
−0.315995326
11.18856979
153.1436099
3.56359E−35
6.62172E−33


Nfkb1
0.606837763
9.537083442
152.6546593
4.55771E−35
8.37273E−33


Rbpj
0.680460617
9.38517504
152.5848125
4.72076E−35
8.57482E−33


Tubb5
−0.744906297
10.00307441
152.0091079
6.30718E−35
1.13291E−32


S1pr1
−0.952521601
9.290338881
150.4433721
1.38692E−34
2.46383E−32


Il2rb
0.537577161
9.646357284
148.867921
3.06486E−34
 5.3855E−32


Litaf
0.754556108
9.445062895
147.9067642
4.97178E−34
8.64235E−32


Cd3g
0.286935653
11.10942082
145.2921461
1.85392E−33
3.18835E−31


Rplp1
−0.248269602
11.7032567
144.8967265
2.26224E−33
3.84962E−31


Slc15a3
0.801237735
9.227334772
144.1671838
3.26617E−33
5.50009E−31


Stk24
0.558224742
9.608522084
144.136344
3.31727E−33
5.52856E−31


Il1r2
1.188001348
9.256675468
142.1821627
8.87259E−33
1.46362E−30


Ccr1
0.904615136
9.184947429
142.1482447
9.02541E−33
1.47379E−30


Jund
0.428678506
11.83414679
141.6222609
1.17619E−32
1.90143E−30


Traf1
0.437567505
10.10521315
141.2746865
1.40113E−32
2.24264E−30


Lilrb4a
0.639236426
9.646913438
141.0375314
1.57883E−32
2.50229E−30


Rpl41
−0.169568893
12.79520696
140.2066552
2.39896E−32
 3.7652E−30


Rpl19
−0.186575538
12.11746352
138.3592406
6.08169E−32
9.45352E−30


Uhrf2
0.663533091
9.554448493
137.618841
8.82976E−32
1.35945E−29


Nfkbiz
0.589490901
9.633444859
137.3518839
1.01003E−31
1.54039E−29


Gm8730
−0.391879071
10.44464909
137.2040135
1.08811E−31
1.64397E−29


Eif1
0.221160233
11.85893927
136.6927236
1.40766E−31
2.10706E−29


Sdc4
0.864197912
9.184332418
136.104023
1.89346E−31
2.80823E−29


Nrgn
0.79593449
9.169490694
134.3836196
4.50361E−31
6.61867E−29


Ikzf3
0.758912682
9.310513762
134.3025958
 4.6912E−31
6.83225E−29


Gpr65
0.721922552
9.365534671
133.4092603
7.35695E−31
 1.0619E−28


ler5l
0.917735422
9.22331753
132.9741944
9.15947E−31
1.31037E−28


Sla
0.573929064
9.546171489
132.091611
1.42872E−30
2.02602E−28


Ptms
0.706758953
9.287837433
131.8631613
1.60296E−30
2.25335E−28


Epsti1
−0.531779216
9.946031824
129.0243258
6.69923E−30
9.33618E−28


Samsn1
0.565617595
9.795395326
127.6319862
 1.3511E−29
1.86683E−27


Btg1
0.316118724
12.25005454
126.0369939
3.01804E−29
4.13472E−27


Rpl4
−0.200905454
11.68898179
125.9194397
3.20222E−29
4.35018E−27


Rpl22l1
−0.325682762
10.87574132
122.9210326
1.45111E−28
1.95489E−26


Rps24
−0.209984223
12.00584899
122.8780161
1.48291E−28
1.98122E−26


Il2ra
0.732900379
9.266099444
122.2199043
2.06619E−28
2.73787E−26


Cd74
1.042070273
9.434236978
120.8762601
4.06726E−28
5.34563E−26


Rabgap1l
0.625903862
9.328937377
120.4547377
5.03015E−28
6.55785E−26


Bcl211
0.671196005
9.376444233
119.2060708
9.43956E−28
1.21377E−25


Rps27
−0.20992776
13.23488676
119.2017178
 9.4603E−28
1.21377E−25


Fas
0.720279276
9.354790431
119.0791946
1.00631E−27
1.28094E−25


Rps23
−0.172279837
12.48529882
117.8778644
 1.844E−27
2.32892E−25


Rpl17
−0.175623878
12.29663229
116.7248327
3.29791E−27
4.13287E−25


Rab11fip1
0.683102221
9.24534037
116.0444077
4.64772E−27
5.77962E−25


Ctsb
0.491115464
9.553686158
115.6909048
5.55461E−27
6.85464E−25


Csf1
0.893917069
9.192117276
114.1779361
1.19125E−26
1.45892E−24


Batf
0.556500291
9.653651878
113.1282182
2.02263E−26
2.45848E−24


Camk2n1
0.677140769
9.340531404
112.320738
 3.0394E−26
3.66679E−24


Lmnb1
0.496811846
9.781495667
112.1642896
3.28895E−26
3.93846E−24


Prr7
0.506933212
9.824433563
112.1237154
3.35695E−26
3.99033E−24


Wisp1
0.57314674
9.168186557
110.4669626
7.74251E−26
9.13616E−24


Rps29
−0.210381637
12.2446762
109.1261756
1.52277E−25
1.78385E−23


Rps3a1
−0.189505791
11.67389213
109.0426157
1.58834E−25
1.84727E−23


Rpl12
−0.280198685
10.99235633
108.860878
1.74086E−25
2.01019E−23


Plk2
0.750446155
9.17838771
108.6038869
1.98186E−25
2.27225E−23


Kdm2b
0.56499929
9.446703124
108.5076284
2.08048E−25
2.36852E−23


Wnk1
0.492798635
9.627957555
108.2227911
2.40202E−25
2.71545E−23


Cd83
0.807532146
9.178407827
106.7863598
4.95842E−25
5.56651E−23


Ifng
0.886646176
9.686658841
106.6990667
5.18171E−25
5.77707E−23


Rps27a
−0.184418544
11.80973167
106.5796788
5.50347E−25
6.09377E−23


Cytip
0.350491758
10.18840246
106.0027935
7.36313E−25
8.09744E−23


Lilr4b
0.511360258
9.778154625
105.7520711
8.35625E−25
9.12751E−23


Nfkbib
0.504241566
9.487223272
105.680851
8.66204E−25
9.39802E−23


Scn1b
0.509524106
9.169087199
105.5628385
9.19358E−25
9.90822E−23


Rps15
−0.203059364
11.4907216
102.7590505
3.78493E−24
4.05213E−22


Il17a
1.935391149
9.237168765
102.4199032
4.49166E−24
4.77712E−22


Ucp2
0.363772503
10.01286384
101.8832566
5.88922E−24
6.22256E−22


St6galnac3
0.675416095
9.261096607
101.3057309
7.88274E−24
8.27483E−22


Rpl37a
−0.172845664
12.61561552
100.6238399
1.11221E−23
  1.16E−21


Cd6
0.418108973
9.931698154
100.1180091
1.43582E−23
1.48104E−21


Rpl36
−0.186839018
11.87411391
100.1145234
1.43835E−23
1.48104E−21


Rpl9
−0.172551122
11.84224161
99.8545999
1.64006E−23
1.67805E−21


Rps13
−0.169190789
11.9252029
97.97494346
 4.2371E−23
4.30799E−21


Ctla2a
−0.609825116
10.33555104
96.53343799
8.77493E−23
8.86597E−21


Stat4
0.501673088
9.506547453
95.6224894
1.39018E−22
1.39588E−20


Nr4a1
0.550612812
9.629989419
95.20303248
1.71827E−22
1.71466E−20


Il7r
−0.558749116
9.75347996
95.17603619
1.74186E−22
1.72754E−20


Rpl26
−0.184107869
11.57423644
94.93673751
1.96568E−22
1.93763E−20


Rps14
−0.146333995
12.65498378
94.80316287
2.10289E−22
2.06033E−20


Rasgrp2
−0.687938938
9.37707238
94.64490756
2.27792E−22
2.21836E−20


Dnajc15
−0.415379881
9.893121495
94.12385202
2.96386E−22
2.86909E−20


Gzmk
−1.043301711
9.363674736
94.00786796
3.14272E−22
3.02412E−20


Rpl35a
−0.177783341
11.72342483
93.76286064
3.55684E−22
3.40236E−20


Rpl37
−0.16620817
12.07301201
93.58838916
 3.8846E−22
3.69402E−20


Emb
0.407065297
10.25095358
93.57139524
3.91809E−22
3.70409E−20


Gch1
0.570152772
9.459450391
93.03068278
5.14899E−22
4.83945E−20


D16Ertd472e
0.453585869
9.624017665
92.73130439
5.98986E−22
5.59723E−20


Dgat1
0.530352135
9.77868262
92.53634073
6.60998E−22
 6.1412E−20


Nfkbia
0.423596882
10.83366717
92.43061048
6.97272E−22
 6.4412E−20


Ly6c2
−1.111488738
9.265996796
91.81855201
9.49997E−22
8.72593E−20


Rpl3
−0.158339089
12.09253162
91.51920698
1.10514E−21
1.00936E−19


Zc3h12a
0.484764166
9.536813666
90.15458744
 2.2026E−21
2.00041E−19


Rps9
−0.162455931
11.99537323
90.08851031
 2.2774E−21
2.05679E−19


Tnfrsf1b
0.516562473
9.452782192
89.6453515
2.84917E−21
2.55888E−19


Rpl27a
−0.166874022
11.73983306
89.41629258
3.19891E−21
2.85711E−19


Pdcd1
0.790619463
9.244434269
89.09231595
3.76812E−21
 3.347E−19


Myl12a
0.247801136
10.67832871
89.02278242
3.90292E−21
3.44779E−19


Pim3
0.642188756
9.328476745
88.91325482
 4.1251E−21
3.62426E−19


Rpl23
−0.182988453
11.70859607
88.24623254
5.77932E−21
5.05019E−19


Il22
1.587785436
9.48289887
88.01465782
6.49712E−21
5.64691E−19


S100a11
0.291981912
10.60259181
87.37637479
8.97158E−21
7.75586E−19


Tgif1
0.448665946
9.72028063
87.1158878
1.02345E−20
8.80059E−19


Rpl39
−0.181027763
11.77727203
86.79123751
1.20603E−20
1.03157E−18


Sytl3
0.484538559
9.50441997
86.48786684
1.40597E−20
1.19626E−18


Mir155hg
0.675607589
9.203846162
86.09119012
1.71827E−20
1.45432E−18


Hif1a
0.401934609
9.774243864
86.00779175
1.79228E−20
1.50906E−18


Itgb1
−0.867290308
9.299264735
85.97505545
 1.8222E−20
 1.5263E−18


Smim3
0.576452859
9.350052324
85.96468815
1.83178E−20
1.52642E−18


Rpl6
−0.160525203
11.76079317
84.93181841
3.08833E−20
2.56031E−18


Rps20
−0.237673584
11.06855654
84.75338603
  3.38E−20
2.78781E−18


Bcl2a1a
0.64471644
9.252650209
84.52563174
3.79266E−20
3.11229E−18


Ccl1
1.624101666
9.258098088
83.86340919
5.30168E−20
4.30688E−18


Tmem176b
0.721063124
9.448095178
83.87163544
5.27966E−20
4.30688E−18


Cox17
0.352580634
9.818116404
83.64777925
5.91266E−20
4.77921E−18


Rpl21
−0.169864625
11.76872215
83.24580779
 7.2459E−20
5.82772E−18


Hmgb2
−0.387568788
10.71130337
82.84554995
8.87218E−20
7.10038E−18


Commd8
−0.54296912
9.438213878
82.57656026
1.01655E−19
8.09538E−18


Uap1
0.520815246
9.373356657
82.55889475
1.02568E−19
8.12801E−18


Eef2
−0.185290498
11.29631996
80.9150407
2.35633E−19
1.85817E−17


Mmp9
0.58263451
9.175261184
80.89442021
2.38105E−19
1.86855E−17


Emp3
−0.437281554
9.864612689
80.86112424
2.42151E−19
1.89112E−17


Crem
0.520771771
10.06693577
80.83319269
2.45598E−19
1.90881E−17


Tmem176a
0.756251292
9.404489195
80.19433366
3.39339E−19
2.62476E−17


Itm2c
0.438982008
9.518096519
79.53250521
4.74357E−19
3.65164E−17


Itk
0.389293322
9.814325519
79.31793277
5.28776E−19
4.05127E−17


Crlf2
0.486705303
9.388760459
79.07850293
5.96903E−19
4.55167E−17


Ms4a6b
−0.359447432
10.19493409
78.10427151
9.77424E−19
7.41832E−17


Arf6
0.343694888
9.853374067
78.01575022
1.02222E−18
7.72208E−17


Eea1
0.570647144
9.220110798
77.7632572
1.16161E−18
8.73423E−17


Tmem158
0.422938332
9.165141433
77.63465939
1.23975E−18
9.27864E−17


Fth1
0.215979972
11.58471842
77.57335302
1.27884E−18
9.52705E−17


Prkar1a
0.274347844
10.10979937
76.99987246
1.70969E−18
1.26784E−16


Rpl11
−0.151171628
11.70903164
76.76522996
1.92538E−18
1.42126E−16


Stat5a
0.552298427
9.260743354
76.06349512
2.74689E−18
2.01846E−16


Rpl23a
−0.147657414
12.17556349
75.49517478
3.66301E−18
2.67947E−16


Cd28
−0.347012261
10.37952986
75.2579058
4.13073E−18
3.00799E−16


Rps2
−0.18944846
11.63567309
74.93771616
 4.858E−18
3.52173E−16


Havcr2
0.539582937
9.180313486
73.34910354
1.08631E−17
7.83989E−16


Nfkbid
0.644113236
9.347296213
72.72063103
1.49364E−17
1.07317E−15


Cbx3
−0.581747509
9.518039516
72.62422047
1.56842E−17
1.12191E−15


Rpl24
−0.15447822
11.77225336
72.39600541
 1.7607E−17
 1.2539E−15


Sh2d2a
0.376644419
9.846354303
71.99999673
2.15198E−17
1.52583E−15


Lef1
−0.609615782
9.289425739
71.88108079
2.28565E−17
1.61353E−15


Gm27166
0.407317455
9.163327075
71.56233274
2.68636E−17
1.88816E−15


AW112010
0.282452628
11.38322545
71.2150772
3.20331E−17
2.24176E−15


Serpina3g
0.534098778
9.674243135
70.42584586
4.77897E−17
3.33003E−15


Ifitm1
−1.804896002
9.599666975
69.60975443
7.22786E−17
5.01483E−15


Cish
0.464190484
9.408302432
69.50815718
7.60991E−17
5.25734E−15


Myl12b
0.261240272
10.14192399
69.43717684
7.88876E−17
 5.4268E−15


Hccs
0.494564115
9.354685384
69.31445298
8.39521E−17
5.75072E−15


Ubald2
0.304205172
10.62012763
69.07611792
9.47356E−17
6.46201E−15


Ppp1r14c
0.355051825
9.162055719
68.72964003
1.12931E−16
7.67075E−15


Ubl3
0.399042618
9.565981005
67.66623714
1.93651E−16
1.30986E−14


Rplp2
−0.157925517
11.91006486
67.41326155
2.20163E−16
1.48298E−14


Rpl30
−0.196263195
10.96407438
66.75449795
3.07515E−16
2.06277E−14


Rpl36a
−0.20636157
11.04527747
65.99089756
 4.5301E−16
3.02618E−14


Ifitm3
−0.741460054
9.717437467
65.84393111
4.88081E−16
3.24704E−14


Pycard
−0.484732372
9.57708276
65.33967505
6.30393E−16
4.17661E−14


Ptp4a2
0.290548225
9.957583537
65.07030211
7.22731E−16
4.76884E−14


Ccl5
−0.614177482
13.31111049
65.02719932
7.38714E−16
4.85449E−14


H2-Q7
0.238928118
10.62098954
64.16806184
1.14246E−15
7.47732E−14


Nfil3
0.543821195
9.279162762
64.01922369
1.23211E−15
8.03157E−14


Gnb2l1
−0.219333271
10.54007349
63.52463448
1.58374E−15
1.02822E−13


Tmsb4x
0.134395465
14.24920488
63.32329405
1.75418E−15
1.13432E−13


Srxn1
0.443413556
9.179960772
62.81840721
 2.2667E−15
 1.4599E−13


Dusp4
0.542015029
9.244687523
62.16159044
3.16399E−15
2.02973E−13


Ifi27
0.364029871
9.579454659
61.73449754
3.93034E−15
2.51138E−13


Dennd5a
0.486880142
9.227017994
61.55510006
4.30525E−15
2.74011E−13


Ube2l6
0.494919463
9.197355951
61.47362964
4.48713E−15
2.84466E−13


Nrip1
0.453730601
9.582617594
61.30329582
4.89261E−15
 3.0896E−13


Rnf19b
0.466509748
9.379266424
60.94088293
5.88147E−15
 3.6996E−13


Dad1
0.255140794
10.03535203
60.85328081
6.14909E−15
3.85296E−13


Cd81
0.489308098
9.170580291
60.72356256
6.56793E−15
 4.0995E−13


Adora2a
0.449099604
9.426691213
60.60452645
6.97734E−15
4.33829E−13


Glipr2
−0.475835778
9.484107632
60.27095878
 8.2658E−15
5.11973E−13


2810417H13Rik
−1.104938967
9.337315681
60.12562098
8.89924E−15
5.49103E−13


Rpl28
−0.211074368
10.72552157
59.95350725
9.71248E−15
5.97003E−13


Cxcr3
−0.481054249
9.551371405
59.90276731
9.96612E−15
6.10274E−13


Hk2
0.558083103
9.291512241
59.86859259
1.01407E−14
 6.1862E−13


Ckb
0.537418423
9.335711504
59.82713032
1.03566E−14
6.29415E−13


Pqlc1
0.536550639
9.21423837
59.77158922
 1.0653E−14
6.45006E−13


Ubl5
0.227393519
10.27393085
59.43006853
1.26718E−14
7.64375E−13


Hlf
0.469359308
9.183131189
59.07360438
1.51883E−14
9.12766E−13


Ggt1
−0.482757461
9.203324774
58.96486419
1.60513E−14
9.61055E−13


Eef1g
−0.232791111
10.38514948
58.86655143
1.68736E−14
1.00657E−12


Tff1
0.800550053
9.186702666
58.58119672
1.95072E−14
1.15939E−12


Asb2
0.474910444
9.480773625
58.26906703
2.28611E−14
1.35374E−12


Rpl15
−0.196567365
10.73583328
58.16857192
2.40592E−14
1.41949E−12


Pdcd4
−0.433321184
9.736958579
57.54915517
3.29637E−14
1.93779E−12


Gm26740
0.385787547
9.658978649
57.29699619
3.74727E−14
2.19487E−12


Arf4
0.289627395
9.97479051
56.75239941
4.94287E−14
2.88471E−12


Kit
0.361389295
9.167862474
56.47666634
5.68692E−14
3.30701E−12


Stmn1
−0.996361487
9.43019399
56.43186032
 5.818E−14
 3.3711E−12


Btg2
0.279901817
10.53791954
56.13951487
6.75066E−14
3.89754E−12


Esm1
−0.770430889
9.307911702
56.02164157
7.16777E−14
4.12363E−12


Jun
−0.827066689
9.603760111
55.34047173
 1.0136E−13
5.81059E−12


Rps8
−0.149468965
11.59257976
55.20418787
1.08637E−13
6.20575E−12


Rps27rt
−0.255171721
11.16195099
55.0140882
1.19669E−13
6.81186E−12


Cd44
0.362141582
9.560095995
54.61856376
1.46347E−13
8.30119E−12


Myo1g
0.396341726
9.439415321
54.50805268
1.54812E−13
8.75068E−12


Calr
0.281098495
10.02078334
54.09506061
1.91021E−13
1.07597E−11


Crbn
0.353059697
9.708183401
53.96723433
2.03861E−13
1.14431E−11


Cd3e
0.233574904
10.3749064
53.67655956
2.36367E−13
1.32218E−11


Nr3c1
0.435805045
9.448742099
53.64404633
2.40311E−13
1.33961E−11


Sp100
−0.41585345
9.553686189
53.59274678
2.46668E−13
1.36563E−11


Klhl6
−0.508204735
9.316905875
53.59681118
2.46159E−13
1.36563E−11


Rps12
−0.210582225
10.77061599
53.54559432
 2.5266E−13
1.39403E−11


S1pr4
−0.454655152
9.466008758
52.71694568
3.85253E−13
2.11837E−11


Aplp1
0.432674667
9.212555161
52.59179415
4.10601E−13
2.25009E−11


Gimap4
−0.240367235
10.52502448
52.52162603
4.25537E−13
2.32406E−11


Plk3
0.478782538
9.376309307
52.27013392
4.83675E−13
2.63269E−11


Nfkb2
0.369018011
9.521818169
52.2111144
4.98432E−13
2.70391E−11


Herpud1
0.372438068
9.555345247
52.01800557
 5.4994E−13
2.97336E−11


Cotl1
−0.247357975
10.46113625
51.80498811
6.12959E−13
3.30303E−11


Rpl27
−0.143507587
11.47263607
51.4272134
7.43014E−13
3.99055E−11


Cdkn1b
−0.502025248
9.417453754
51.41112286
7.49129E−13
4.01007E−11


Slc25a3
0.260721523
9.949542602
51.20807313
8.30763E−13
4.43238E−11


1500009L16Rik
−0.542177966
9.246966845
51.17448647
8.45099E−13
4.49404E−11


Tbc1d10c
−0.420702224
9.522664674
51.06091305
8.95437E−13
4.74611E−11


Zap70
0.337335162
9.555404972
50.97047958
9.37656E−13
4.94794E−11


Csf2
0.79245829
9.183961698
50.96633727
9.39637E−13
4.94794E−11


Nabp1
0.36892163
9.632417698
50.79434236
1.02569E−12
5.38354E−11


Serpinb1a
0.721125754
9.512639892
50.70625213
1.07277E−12
5.61244E−11


Rpl34
−0.118076419
11.98010888
50.63819169
1.11063E−12
5.79174E−11


Rpl7a
−0.185997252
10.71264639
50.5255593
1.17623E−12
6.11412E−11


Atp1b3
−0.43409369
9.41300625
50.42513044
1.23799E−12
6.41452E−11


Ramp3
0.557408857
9.936798851
50.34255136
1.29119E−12
6.66882E−11


Tmbim6
0.218312849
10.08427218
49.92911906
1.59401E−12
8.20663E−11


Csnk1a1
0.284142186
9.708202059
49.80980859
1.69395E−12
8.69346E−11


Rpl38
−0.14321935
11.67454895
49.67673704
1.81283E−12
 9.2741E−11


Ubb
0.178674236
12.9047306
49.33933111
2.15302E−12
1.09797E−10


Itgav
0.460676285
9.245494327
49.23555497
2.26999E−12
1.15398E−10


Dnajb1
−0.621384827
10.31779183
49.17154489
2.34528E−12
1.18852E−10


Slamf6
−0.548414682
9.319043642
49.08519847
2.45083E−12
1.23813E−10


Tmem123
0.308551986
9.654226375
48.55589077
3.21009E−12
1.61664E−10


Cxcr4
0.458227755
9.20350922
47.73294408
4.88415E−12
2.45209E−10


Vamp8
0.288954516
9.668612941
47.46653284
5.59511E−12
2.79168E−10


Psme2
0.231125589
10.07701741
47.47010135
5.58493E−12
2.79168E−10


Dusp5
0.282745296
9.994462064
47.30156077
6.08637E−12
3.02746E−10


Tubb6
0.311404816
9.16596651
47.00909462
7.06581E−12
3.50386E−10


Xbp1
0.346296453
9.544395327
46.81439795
 7.8038E−12
3.84513E−10


Gabpb1
0.407342294
9.478019755
46.80899053
7.82536E−12
3.84513E−10


Gimap6
−0.250117271
10.46581517
46.81130486
7.81612E−12
3.84513E−10


Tcf7
−0.458371226
9.419705743
46.79725798
7.87235E−12
 3.8565E−10


Il21
0.334899575
9.167189925
46.65641679
8.45895E−12
4.13134E−10


Ppp1r11
0.315315515
9.56745842
46.63219242
8.56417E−12
4.17013E−10


Serpina3f
0.611380344
9.259717975
46.43170786
9.48679E−12
4.60551E−10


C2cd4b
0.305709635
9.163047524
45.77620863
1.32564E−11
6.41625E−10


Ccnd2
0.321927763
9.824613466
45.72543169
1.36045E−11
6.56508E−10


Pdlim1
−0.473620534
9.286476238
45.16874379
1.80767E−11
8.69727E−10


Ttc39c
0.403933345
9.318650364
44.88156534
2.09319E−11
1.00411E−09


Ciapin1
0.392937977
9.338637993
44.67693901
2.32378E−11
1.11143E−09


Smox
0.466037737
9.201962775
44.63380471
2.37554E−11
1.13283E−09


Itpr1
0.395519874
9.29809745
44.54267134
2.48873E−11
1.18332E−09


Csrnp1
0.398371772
9.467469906
44.4996176
2.54407E−11
1.20608E−09


Eef1b2
−0.234877371
10.07539868
44.48805958
2.55913E−11
1.20968E−09


Coro1a
−0.210386427
10.77304014
44.28150328
2.84391E−11
1.34037E−09


Ly6g5b
0.453449596
9.223291205
44.27562159
2.85246E−11
1.34049E−09


Hmgn2
−0.516427634
9.445227782
44.18024862
2.99488E−11
1.40334E−09


Arpc3
0.193568182
10.54007412
44.16091507
3.02461E−11
1.41317E−09


Itgb8
0.150825817
9.157971212
44.02687611
3.23898E−11
1.50897E−09


Rasa3
−0.456532606
9.237633903
43.88549931
3.48159E−11
1.61734E−09


4833407H14Rik
0.432971571
9.210586484
43.61892105
3.98963E−11
1.84803E−09


Srsf5
0.224610507
10.09105297
42.90253888
5.75359E−11
2.64993E−09


Tnfrsf26
−0.421012345
9.206974678
42.90779839
5.73815E−11
2.64993E−09


Uba52
−0.238263321
10.23996246
42.68346594
6.43539E−11
2.95553E−09


Tg
0.21283359
9.163083285
42.49207931
 7.0969E−11
 3.2501E−09


Eef1a1
−0.107002554
12.38177109
42.46218858
7.20619E−11
3.29083E−09


2700094K13Rik
−0.438643961
9.385257191
42.44288494
7.27767E−11
3.31411E−09


Cdca3
−0.392634098
9.196718956
42.4258423
7.34136E−11
3.33372E−09


Ptpn 18
−0.226744978
10.2346755
42.2886025
7.87502E−11
3.56604E−09


Il10
0.594261639
9.174516082
42.24369134
8.05795E−11
3.63868E−09


Rheb
0.295652408
9.556041475
42.10431461
8.65321E−11
3.89659E−09


Ebi3
0.367076397
9.178699077
41.85523589
9.82872E−11
4.41364E−09


Birc5
−0.679292998
9.251484435
41.7880138
1.01725E−10
4.55537E−09


Traf4
0.397393716
9.359798204
41.65359192
1.08965E−10
4.85815E−09


Naca
−0.15683386
10.80133383
41.65139444
1.09088E−10
4.85815E−09


Xcl1
0.951964559
9.405054453
41.31879274
 1.2932E−10
5.74335E−09


Pdia6
0.340678053
9.493316871
41.26199076
1.33133E−10
 5.8965E−09


Mki67
−0.402680653
9.20298528
41.2101277
1.36712E−10
 6.0385E−09


Cks1b
−0.56316805
9.261610399
41.09631286
1.44909E−10
6.38312E−09


Klrb1b
0.402897716
9.168673107
41.05896621
1.47705E−10
6.48858E−09


Cd4
0.28495697
9.643227058
40.87227781
 1.6251E−10
7.11962E−09


Maf
0.361126024
9.568694911
40.76659514
 1.7154E−10
7.49493E−09


Ube2c
−0.603273399
9.233354826
40.64117095
1.82912E−10
7.97022E−09


Ifrd1
0.287187244
10.02592468
40.57737019
1.88983E−10
8.21262E−09


Rpl31
−0.16139966
10.87152232
40.55059192
 1.9159E−10
8.30362E−09


Dusp10
−0.470357283
9.475528346
40.43935976
2.02814E−10
8.74317E−09


Rbm3
−0.193760967
10.73099358
40.43969521
2.02779E−10
8.74317E−09


Tacc3
−0.331766486
9.190029393
40.29368335
2.18514E−10
9.39495E−09
















TABLE 3G







LPL-6 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Ccl5
−2.119299251
13.31114939
553.6615868
 2.0112E−122
 3.2513E−118


Actb
−1.037279996
13.40503113
371.7898077
7.62957E−83
6.16698E−79


Malat1
−0.585159603
14.66861581
331.2421667
5.15517E−74
2.77795E−70


Tmsb4x
0.298469035
14.2491977
309.5886424
2.68433E−69
1.08487E−65


Jund
−0.708702846
11.83423061
291.9011257
1.91568E−65
6.19377E−62


Kdm6b
−1.224505023
9.740630281
265.2542981
1.22814E−59
3.30902E−56


Pim1
−0.747674341
10.82590639
254.0062819
3.47585E−57
8.02723E−54


Klf6
−0.974714591
9.897242743
244.207249
 4.7574E−55
9.61352E−52


Icos
0.600295791
10.25640856
233.1244444
1.24157E−52
2.23014E−49


Dnajb1
−1.387544483
10.31787822
204.9269834
1.75678E−46
2.84001E−43


Tnfrsf4
0.656744874
10.62223191
193.5807006
5.25749E−44
 7.7266E−41


Jun
−1.611103318
9.603803257
192.9520131
 7.211E−44
9.71443E−41


Klf2
−1.352858036
9.960820117
190.3008952
2.73308E−43
3.39869E−40


Junb
−0.53873041
11.89128335
178.4624427
1.04988E−40
1.21231E−37


Klrk1
−1.134540447
9.564496772
163.4242247
 2.0209E−37
2.17799E−34


Klrc1
−1.002669535
9.658443855
158.9563459
1.91284E−36
1.93269E−33


Rps11
0.194712205
12.26304473
156.1743432
7.75479E−36
7.37435E−33


Fos
−1.298192946
9.517399295
144.8988051
2.25988E−33
2.02962E−30


Actg1
0.308629396
12.09922083
140.7810921
1.79643E−32
1.52848E−29


Psme2
0.36279445
10.07701332
140.1516077
2.46638E−32
1.99358E−29


Cd52
0.319567834
11.79358582
139.3304579
3.72932E−32
2.87087E−29


Ifi27l2a
0.787112867
9.817057964
136.8601041
1.29387E−31
9.50759E−29


Cbx3
−0.769736489
9.518048716
136.1258701
1.87275E−31
 1.3163E−28


Satb1
0.570904875
9.757032638
135.046907
 3.2246E−31
2.17204E−28


Nr4a1
−0.731187746
9.630004042
133.3325151
7.64691E−31
 4.9448E−28


Nkg7
−0.477227983
11.21025218
127.7495144
1.27342E−29
7.73982E−27


Arpc2
0.244788106
10.79491082
127.7197104
1.29268E−29
7.73982E−27


Tmsb10
0.208835701
12.94245518
126.3656535
2.55741E−29
1.47654E−26


Rac2
0.253915556
11.09605368
126.0748863
2.96096E−29
1.65058E−26


Dusp1
−0.734404833
9.939529983
121.3508566
3.20189E−28
1.72539E−25


Sh3bgrl3
0.259050953
11.24480074
121.1440221
3.55374E−28
1.85322E−25


Pdcd4
−0.608087104
9.736997086
120.6294586
4.60607E−28
2.32693E−25


Ccl4
−2.269830956
9.567609898
120.086778
 6.0553E−28
2.96636E−25


Tra2b
−0.476194641
9.814927917
118.9336673
1.08291E−27
5.14892E−25


Fosb
−0.934865905
9.410873748
117.0575887
2.78852E−27
1.28798E−24


Tubb5
−0.629055114
10.0030371
114.7348946
 8.9954E−27
4.03943E−24


Eef2
0.193903782
11.29629909
111.5670215
4.44521E−26
 1.9422E−23


Rpl29
0.210961309
11.21424374
111.1928464
5.36859E−26
2.28391E−23


Coro1a
0.300729816
10.77301274
109.4044536
1.32332E−25
5.48533E−23


Zfp36
−0.929098819
9.294666471
107.2992323
3.82783E−25
1.54702E−22


Cotl1
0.313916071
10.46110054
105.4791704
9.59007E−25
 3.7813E−22


Btg1
−0.31432151
12.25010724
103.5727856
2.51001E−24
9.66116E−22


Rplp0
0.166102954
12.38774335
103.4192727
2.71223E−24
1.01967E−21


Crip1
−0.502107257
11.66661525
103.2854441
2.90177E−24
1.06614E−21


Cox4i1
0.21654735
10.68632092
101.9225287
5.77362E−24
2.07414E−21


Ptpn22
−0.418069094
10.09356864
101.6750761
6.54183E−24
2.29903E−21


Myl6
0.224771123
10.93118441
98.12750402
3.92292E−23
1.34932E−20


Tuba1b
−0.669934532
9.729931155
95.76193385
1.29563E−22
4.36358E−20


Rgcc
−0.874994054
9.563667858
94.81868148
2.08647E−22
6.88366E−20


Cdkn1b
−0.635174622
9.417482747
93.7734478
3.53786E−22
1.14386E−19


Neat1
−0.596555269
9.477111072
92.32207019
7.36583E−22
2.33482E−19


Csrnp1
−0.610932033
9.467484395
91.63024448
1.04484E−21
3.24824E−19


Naca
0.203875855
10.80131195
90.9215054
1.49486E−21
4.55961E−19


Gem
−0.865598263
9.368397194
89.87230954
2.54038E−21
7.46686E−19


Abhd2
−0.664957436
9.292318122
89.87963305
2.53099E−21
7.46686E−19


Rpl41
0.127967691
12.79519793
89.67974193
2.80008E−21
8.08322E−19


Pfn1
0.239223472
12.14557892
89.50160675
 3.0639E−21
8.68964E−19


Btf3
0.194596928
10.71545921
88.29955513
5.62561E−21
1.56799E−18


Ier2
−0.464679761
9.828717858
88.24976501
5.76901E−21
1.58071E−18


Rpgrip1
−0.620409035
9.229072115
87.48124452
8.50828E−21
2.29241E−18


Hspa1a
−1.404194987
11.00156878
87.25336404
9.54728E−21
2.53018E−18


Rpl32
0.144936887
12.44733618
86.78944154
1.20712E−20
3.14747E−18


Epsti1
0.367584515
9.946036789
86.67117338
1.28151E−20
 3.2884E−18


Rpl7a
0.213884318
10.71261113
86.19936713
 1.6268E−20
4.10919E−18


Atp5e
0.230435333
10.27341219
86.16667568
1.65391E−20
4.11341E−18


Clta
0.31374906
9.873288523
85.62610594
2.17386E−20
5.32465E−18


Klrd1
−0.780902756
9.372668746
85.1636242
2.74669E−20
 6.6273E−18


Ppp1ca
0.265838001
10.29794445
85.06970008
2.88031E−20
6.84751E−18


Rps27
−0.178481761
13.23489548
83.42957086
6.60269E−20
1.54694E−17


Eomes
−0.782994701
9.215525466
83.32009501
6.97866E−20
1.61167E−17


Btg2
−0.361177255
10.53796877
82.29599985
1.17159E−19
2.66759E−17


Arhgdib
0.246995265
10.73176252
81.72143316
1.56685E−19
3.51801E−17


Srsf2
−0.38575707
9.857793962
81.57579594
1.68667E−19
3.73517E−17


Ifng
−0.925453687
9.686670275
81.19858443
2.04138E−19
4.45959E−17


Rpl18
0.147120477
11.80688286
80.88213076
 2.3959E−19
5.16429E−17


B2m
0.127460393
12.79981702
80.45008985
2.98141E−19
6.34177E−17


Rps6
0.132843484
12.20837322
79.63837783
4.49607E−19
9.43941E−17


Gzmk
−0.915585703
9.363683032
78.08817128
9.85423E−19
2.04235E−16


Tsc22d3
−0.554100907
9.704520503
77.67486703
1.21477E−18
2.48582E−16


Atp5l
0.208815411
10.47764488
76.5962148
2.09741E−18
4.23835E−16


Klrc2
−0.638997942
9.283451384
75.72542726
3.25983E−18
6.42663E−16


Atp5h
0.204975402
10.35716243
75.73020212
3.25195E−18
6.42663E−16


Myl12a
0.216154026
10.67829946
74.71071179
5.44996E−18
1.06149E−15


Cldnd1
0.455613978
9.794877348
74.25249729
6.87378E−18
1.32288E−15


Rpl24
0.143523244
11.77224479
74.13572633
7.29265E−18
1.38698E−15


Tnfaip3
−0.365730976
10.12511135
73.48927117
1.01185E−17
1.90204E−15


Igtp
0.489020478
9.509011969
72.98604439
 1.3057E−17
 2.4262E−15


Zeb2
−0.683047486
9.266621361
72.37282587
 1.7815E−17
 3.2727E−15


Hspa1b
−0.982648588
9.33065317
71.96673669
2.18856E−17
 3.9753E−15


Gbp2
0.578294327
9.365760865
71.84703864
2.32542E−17
4.17698E−15


Limd2
0.306608864
10.08910343
70.73863745
4.07827E−17
7.24497E−15


Nr4a2
−0.594424353
9.521309096
70.3636035
4.93216E−17
8.66666E−15


Podnl1
0.474592382
9.399899052
69.83512388
6.44745E−17
1.12075E−14


Ubb
−0.227426973
12.90474075
69.5319117
7.51881E−17
1.29308E−14


Ctla4
0.371383943
10.15302447
68.7764088
1.10284E−16
1.87669E−14


Ier5
−0.446282214
9.710419
67.34884443
2.27475E−16
3.83059E−14


Cyba
0.228161069
10.43090095
67.27316027
2.36378E−16
3.93946E−14


Ly6a
0.344276567
10.37489399
66.83157909
2.95723E−16
4.87822E−14


Rpsa
0.151295131
11.60006986
65.95050999
4.62389E−16
7.55048E−14


Izumo1r
0.61967677
9.250974438
65.90232049
4.73833E−16
7.65999E−14


Ptpn18
0.246625147
10.23468686
65.53911194
 5.6972E−16
9.11891E−14


Eef1a1
0.126330716
12.38174726
65.51205207
5.77597E−16
9.15434E−14


Cd47
0.243733981
10.23573149
65.08241585
7.18302E−16
1.12739E−13


Tnfrsf18
0.317256822
10.06771506
64.95225433
 7.6735E−16
1.19279E−13


Rpl28
0.196367442
10.72547914
64.85165546
8.07542E−16
1.24331E−13


Dnaja1
−0.382910023
10.76375183
64.28950963
1.07416E−15
 1.6382E−13


Cdkn1a
−0.572722919
9.693191434
64.04001936
1.21917E−15
1.84198E−13


Pmaip1
−0.551162792
9.419398949
63.93022725
1.28905E−15
1.92951E−13


Psmb10
0.346016435
9.566302759
63.15714108
1.90856E−15
2.83063E−13


Camk2n1
−0.548998521
9.340541632
62.825393
2.25868E−15
3.31944E−13


Rpa2
−0.513404915
9.392689651
62.62460404
2.50109E−15
3.64258E−13


Rbm39
−0.201350849
10.68052293
62.46412644
2.71342E−15
3.91654E−13


Rgs16
−0.549477284
9.19690865
62.21207359
3.08391E−15
4.41191E−13


Rpl7
0.144293297
11.21184535
62.08606475
 3.2877E−15
4.66219E−13


Srgn
0.197435701
11.37082448
61.91810443
3.58043E−15
5.03314E−13


Gapdh
0.22553958
10.56198637
61.58565581
4.23896E−15
 5.9075E−13


Rps2
0.160373372
11.63563438
61.3663959
4.73829E−15
6.54694E−13


Rgs2
−0.521144086
10.0598516
60.74892465
6.48385E−15
8.88288E−13


Atp5c1
0.250321016
9.90168537
60.61894058
6.92643E−15
9.40947E−13


Gm26532
−0.572078015
9.298938254
60.31224518
8.09423E−15
1.09043E−12


Ctss
0.407612199
9.35788439
59.39882781
1.28746E−14
1.72009E−12


Rpl36al
0.178394642
10.49579188
59.19840331
1.42549E−14
 1.8889E−12


Psma5
0.353113416
9.439553675
58.52395081
2.00831E−14
2.63954E−12


Rpl3
0.117312584
12.09252558
58.41988325
 2.1174E−14
2.75249E−12


Gimap4
0.227922697
10.52504419
58.40977973
 2.1283E−14
2.75249E−12


Ppp1r16b
−0.456851556
9.488158562
58.18107506
2.39068E−14
3.06728E−12


Gbp3
0.466119067
9.305848055
57.61787477
 3.1832E−14
4.05193E−12


Kmt2d
−0.509132586
9.2641734
57.50848455
3.36524E−14
4.21725E−12


Srrm2
−0.320172857
9.808268375
57.51207828
 3.3591E−14
4.21725E−12


Rora
−0.362384089
9.982422283
57.46868504
3.43403E−14
4.27035E−12


Plek
−0.517944688
9.215823682
57.14493073
 4.0485E−14
4.96758E−12


Nfkbia
−0.369646528
10.83370997
57.14120793
4.05617E−14
4.96758E−12


Myeov2
0.282121028
9.682137922
57.06950421
4.20679E−14
 5.1133E−12


Litaf
−0.519571904
9.445070319
56.35236309
6.05804E−14
7.30853E−12


Cfl1
0.175243041
11.11282374
56.04269339
7.09143E−14
8.49185E−12


Lmna
−0.624473963
9.713563886
55.98834182
 7.2902E−14
8.66569E−12


Rpl31
0.170535302
10.87149283
55.72060327
8.35382E−14
 9.8575E−12


Eif4a2
−0.342532769
9.723875751
55.39883565
9.83947E−14
1.15264E−11


Klf4
−0.641217216
9.240094172
54.83835195
1.30862E−13
1.52195E−11


Il22
−1.523067898
9.482900463
54.56924671
1.50066E−13
1.73283E−11


H3f3b
−0.169982377
12.34437077
54.47679797
1.57294E−13
1.80342E−11


Psma2
0.235537521
9.873200775
54.25508068
1.76081E−13
 2.0046E−11


Ubl5
0.20032877
10.27392635
53.90086965
2.10864E−13
 2.3838E−11


Riok1
0.43384703
9.379913783
53.22660276
2.97206E−13
3.33656E−11


Odc1
0.372271092
10.4535154
53.12397078
3.13148E−13
3.49127E−11


Asb2
0.435113714
9.4807802
52.57892819
 4.133E−13
4.54517E−11


Tomm20
0.208801999
10.02363568
52.582178
4.12617E−13
4.54517E−11


Sdf4
0.266427534
9.917368178
52.46598598
4.37765E−13
 4.7817E−11


Glrx
0.371027895
9.565807787
52.40309399
4.52011E−13
4.87233E−11


Ptma
−0.20232451
11.28818093
52.40274773
4.52091E−13
4.87233E−11


Rps3
0.104436824
11.96704423
51.85522186
5.97476E−13
6.39655E−11


Pkp3
0.335067835
9.709713743
51.70638646
6.44528E−13
6.85489E−11


Ssr4
0.28033814
9.653692829
51.63120088
6.69688E−13
7.07593E−11


Rps10
0.137124331
11.22177397
51.58076967
6.87113E−13
 7.2129E−11


Pomp
0.278699623
9.701368752
51.44364086
7.36823E−13
7.68482E−11


Ifitm2
0.480316373
10.68419752
51.28794721
7.97639E−13
8.25903E−11


Rgs10
0.343212205
9.631731346
51.27700924
8.02095E−13
8.25903E−11


Il2rg
−0.273364109
10.13353391
51.09215035
 8.813E−13
9.01715E−11


Tbx21
−0.476153418
9.277692364
50.63469984
 1.1126E−12
1.13122E−10


Gcnt2
−0.470647546
9.218058561
50.41597291
1.24378E−12
1.25668E−10


Tesc
0.35234916
9.483450902
49.94337593
1.58247E−12
1.58896E−10


Slc39a1
−0.433417379
9.215153753
49.92774503
1.59513E−12
1.59178E−10


Tnfsf8
0.525733735
10.01783487
49.6323025
1.85435E−12
1.83911E−10


Rpl11
0.110213367
11.70901858
49.60546792
1.87989E−12
1.85307E−10


Tbca
0.241332603
9.75478561
49.50794918
 1.9757E−12
 1.9357E−10


Stk24
−0.345711816
9.60853542
49.47575144
2.00839E−12
1.95588E−10


Gngt2
0.417816178
9.363465198
49.3565518
 2.1342E−12
2.06596E−10


Ric1
−0.453997651
9.254662379
49.34080833
 2.1514E−12
2.07021E−10


Commd8
0.336386603
9.438214185
48.22616976
3.79786E−12
3.63291E−10


Eif3h
0.175401684
10.29689224
48.11637516
4.01658E−12
3.81953E−10


Sesn3
0.345251994
9.451624571
48.0760595
4.10002E−12
3.87608E−10


Tacc3
−0.330180442
9.190019982
47.8217631
4.66782E−12
 4.3872E−10


Lsm3
−0.397355218
9.359397052
47.76572348
4.80317E−12
4.48832E−10


Acot7
0.29321749
9.577129276
47.63640279
5.13069E−12
4.76682E−10


Ccna2
−0.368001411
9.19373092
47.55051727
5.36046E−12
4.95184E−10


Tuba1c
−0.469993277
9.281183564
46.81782197
7.79017E−12
7.15545E−10


Prelid1
0.27790907
9.693674656
46.79339374
7.88789E−12
7.20427E−10


Gdi2
0.236813278
9.887621903
46.18643907
1.07519E−11
9.76486E−10


Ldha
0.212909741
10.35598102
46.03661224
1.16064E−11
 1.0482E−09


Cd74
−0.739270074
9.434236295
46.00417217
1.18001E−11
1.05978E−09


Supt16
−0.441561553
9.269927603
45.92148251
1.23089E−11
1.09937E−09


Got1
0.405705948
9.855701415
45.77574039
1.32596E−11
1.17777E−09


Fxyd5
0.163739145
10.88897458
45.59890503
1.45123E−11
 1.282E−09


Sh2d2a
0.289479061
9.84635475
45.32644577
1.66782E−11
1.46532E−09


Zfp36l1
−0.418870473
9.536622714
45.19149366
1.78679E−11
1.56137E−09


Phlda1
−0.539847883
9.44085361
45.17023117
 1.8063E−11
1.56993E−09


Notch2
−0.425992475
9.219652512
45.03790208
1.93257E−11
 1.6707E−09


Gpi1
0.23829591
9.778165149
44.92930737
2.04278E−11
1.74728E−09


Pdcd1
−0.568864329
9.244437101
44.93462396
2.03724E−11
1.74728E−09


Pnrc1
−0.217943097
10.57790653
44.82469758
2.15487E−11
1.83346E−09


Rpl10a
0.138336371
11.14215396
44.52377247
2.51287E−11
2.12686E−09


AW112010
0.227357928
11.38324175
44.21979772
2.93498E−11
2.47119E−09


Plekhf1
−0.295061063
9.179229479
44.15833723
3.02859E−11
 2.5368E−09


Gstm5
−0.448209177
9.202000005
44.13230489
3.06914E−11
2.55751E−09


Tuba4a
−0.412258234
9.389408567
43.88249634
3.48693E−11
2.89076E−09


Ube2s
−0.268614956
10.0029558
43.69026594
 3.8468E−11
3.15672E−09


Tagap
−0.466944977
9.424808628
43.69120062
3.84497E−11
3.15672E−09


Nt5e
0.416621625
9.297374279
43.63415359
 3.9587E−11
3.23214E−09


Cd27
−0.572422105
9.34285757
43.59576726
4.03711E−11
 3.2796E−09


Hjurp
−0.393196909
9.227444004
43.52899827
4.17723E−11
3.37646E−09


Cdkn2d
−0.415706203
9.369245485
43.44303379
4.36483E−11
3.51054E−09


Itgb1
−0.592025611
9.299262307
43.33380996
4.61539E−11
3.69369E−09


Cd160
−0.650849788
9.334772106
43.31831197
4.65209E−11
3.70472E−09


Prdx2
0.285220158
9.529013404
43.19820628
 4.9466E−11
3.91399E−09


Dnajc15
0.238508998
9.893117104
43.19161067
 4.9633E−11
3.91399E−09


Cd69
−0.413066046
9.886545576
43.00176598
5.46905E−11
4.29187E−09


Gnb2l1
0.158004594
10.54003804
42.81387557
6.02036E−11
4.67909E−09


Slamf6
0.449149176
9.319040639
42.81726381
6.00994E−11
4.67909E−09


Smc4
−0.429041212
9.387774585
42.7743266
6.14331E−11
4.75181E−09


Insig1
−0.434558342
9.37348859
42.70816037
6.35466E−11
4.89188E−09


Lag3
−0.697350346
9.272207901
42.56198867
6.84773E−11
5.24646E−09


Ms4a4b
0.223679571
10.7518482
42.36461224
7.57483E−11
5.77616E−09


Pttg1
−0.391336105
9.448089255
42.14887763
8.45825E−11
6.41953E−09


Stat1
0.341265519
9.58026255
42.13598362
 8.5142E−11
 6.4318E−09


Hsph1
−0.497945951
9.472478285
42.07543816
8.78193E−11
 6.6032E−09


Nrip1
−0.403101209
9.582631136
41.82131157
1.00007E−10
7.48481E−09


Atp5j
0.205249314
9.978678584
41.68575303
1.07187E−10
 7.9852E−09


Nucks1
−0.385882183
9.378591222
41.51091348
1.17215E−10
8.69217E−09


Rps20
0.152105258
11.06851844
41.49249368
1.18324E−10
8.69469E−09


Luc7l2
−0.277739676
9.665593924
41.49974923
1.17886E−10
8.69469E−09


Arpc1b
0.161633259
10.55363559
41.32194002
1.29112E−10
9.44442E−09


Ddx5
−0.162093211
11.1992476
41.19466182
1.37798E−10
1.00345E−08


Nusap1
−0.445345836
9.207136218
41.16536981
1.39879E−10
1.01403E−08


Slfn1
0.377286016
9.289471571
40.95793788
1.55541E−10
1.12253E−08


Cytip
0.210964863
10.1883862
40.8692185
1.62765E−10
1.16945E−08


Atf3
−0.562020803
9.29319516
40.67024137
1.80211E−10
1.28907E−08


Ndufa13
0.175764796
10.09895175
40.4790137
1.98739E−10
1.41534E−08


Slfn2
0.241009028
10.08513049
40.44035
2.02711E−10
1.43729E−08


Amica1
−0.49791256
9.335281825
40.34320419
2.13045E−10
1.50397E−08


Rsrp1
−0.252392032
10.00279565
40.30324944
2.17447E−10
1.52837E−08


Eif3m
0.213365247
9.796143519
40.14217018
2.36136E−10
1.65254E−08


Inpp4a
−0.39180413
9.237585118
40.03084006
2.49985E−10
1.74192E−08


Bcl11b
−0.360053334
9.518587772
39.49937961
3.28164E−10
2.27686E−08


Id2
−0.297282362
10.6456213
39.45801276
 3.3519E−10
2.31567E−08


Rras2
0.375221763
9.260363101
39.37014601
3.50617E−10
2.41194E−08


Vmp1
−0.333230189
9.490487697
39.25674927
3.71582E−10
2.54533E−08


Plac8
0.394314739
10.56879742
39.04923729
4.13251E−10
2.81882E−08


Iqgap1
−0.285882286
9.634436107
38.96640363
4.31162E−10
2.90879E−08


Klf13
−0.313082682
9.695558545
38.96654438
4.31131E−10
2.90879E−08


Cd226
−0.412885191
9.268596107
38.96334564
4.31838E−10
2.90879E−08


Smdt1
0.229451251
9.710629839
38.94863378
4.35105E−10
2.91736E−08


Birc5
−0.64959892
9.251453099
38.94139823
 4.3672E−10
2.91736E−08


Ap2s1
0.279837623
9.49800778
38.89100224
4.48141E−10
2.98134E−08


Cenpe
−0.2171381
9.175299278
38.84242197
4.59434E−10
3.04394E−08


Cd7
−0.654275535
9.494173391
38.78759993
 4.7252E−10
3.11786E−08


Smc2
−0.461435056
9.240564708
38.73553039
4.85294E−10
3.18913E−08


Psma6
0.26537951
9.550367808
38.67878428
 4.9961E−10
3.26992E−08


Ly6c2
−0.81589776
9.265993835
38.62656686
5.13157E−10
3.34504E−08


Erdr1
−0.417244234
9.351156146
38.61788986
5.15443E−10
3.34645E−08


Rpl37
0.099363637
12.07300492
38.38701049
5.80173E−10
3.75163E−08


Ubl3
0.283805464
9.565982019
38.27260434
6.15203E−10
 3.9623E−08


Psmb1
0.163974308
10.16664399
38.2135354
 6.3411E−10
4.06787E−08


H2-DMa
0.355376414
9.273410275
37.58887051
8.73414E−10
5.58087E−08


Stmn1
−0.820204514
9.430119458
37.47441949
9.26198E−10
5.89485E−08
















TABLE 3H







LPL-7 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Eomes
3.2798103
9.215511584
3251.147989
0
0


Gzmk
3.190153811
9.363664177
2419.333478
0
0


Cd27
2.373366823
9.342839542
1206.34871
 2.5442E−264
  1.371E−260


Furin
−3.348783874
10.38135368
1145.327777
 4.6487E−251
 1.8788E−247


Ifitm2
−3.790176258
10.6842835
1115.433989
 1.4602E−244
 4.7212E−241


Cxcr6
−2.192953647
10.38993282
898.5245923
 2.0538E−197
 5.5336E−194


Ccl5
1.940472599
13.31106087
868.7682803
 6.0444E−191
 1.3959E−187


Plac8
−2.710532413
10.56890498
770.0228847
 1.7774E−169
 3.5916E−166


Esm1
2.269358847
9.307909321
724.0160454
 1.7922E−159
 3.2192E−156


Gm43291
1.497725884
9.168153577
705.4050464
 1.9969E−155
 3.2281E−152


Sh3bgrl3
−0.862038487
11.24482102
648.2472167
 5.3741E−143
  7.898E−140


Tnfsf8
−3.028860279
10.01788231
633.226239
 9.9345E−140
 1.3383E−136


Sh2d1a
1.383466761
9.507414541
592.0909227
 8.7924E−131
 1.0934E−127


Bend4
1.324976481
9.167728233
556.482621
 4.8952E−123
 5.6526E−120


Rgs16
1.955281568
9.196903871
517.915318
 1.2025E−114
  1.296E−111


Tmsb4x
−0.452472001
14.24921403
481.1750869
 1.1859E−106
 1.1982E−103


Ly6e
−0.861719259
10.76647189
465.704428
 2.7576E−103
 2.6223E−100


Tmsb10
−0.499708274
12.94246496
462.9150501
 1.1157E−102
 1.002E−99


Rpa2
1.383564395
9.392679857
455.3472281
  4.948E−101
4.20993E−98


Ifitm3
−2.675579011
9.717470428
450.7042073
 5.0683E−100
4.09669E−97


Nkg7
0.867977864
11.21019133
448.0411278
 1.925E−99
1.48185E−96


Tox
1.504061266
9.202103104
416.0140164
1.79909E−92
 1.322E−89


Cd52
−0.719754738
11.79358625
408.008358
9.94623E−91
 6.9909E−88


Emb
−1.227465129
10.25097718
388.8176348
 1.4972E−86
1.00849E−83


Chchd10
1.514895153
9.239742304
388.0906979
2.15545E−86
 1.3938E−83


Pim1
−1.140164893
10.82570706
385.4996796
7.89981E−86
4.91186E−83


Lgals1
−0.966904165
11.62770282
377.1045116
5.31326E−84
3.18126E−81


Vim
−1.164303346
10.47346981
371.6841636
8.04455E−83
4.64458E−80


Cldnd1
−1.594626701
9.794944744
356.8336127
1.37741E−79
7.67836E−77


Rgs10
−1.522269541
9.631716545
350.6347051
3.08265E−78
1.66114E−75


Actn2
−1.902931209
9.563357125
347.3787198
1.57749E−77
8.22635E−75


Cxcr5
1.132676561
9.169334986
340.3476
5.36006E−76
2.70784E−73


Lgals3
−1.631074577
10.20017765
340.2629549
5.59247E−76
2.73963E−73


Capg
−1.43890794
9.809387956
337.9741008
 1.7623E−75
8.37921E−73


Rpl41
−0.313152443
12.79521848
320.3014113
1.24522E−71
5.75151E−69


AA467197
−1.792859182
9.471356876
313.3817233
4.00453E−70
1.79826E−67


Tapbpl
1.233104394
9.305800519
312.4747442
6.31139E−70
2.75757E−67


Ly6a
−1.060460377
10.374912
311.9103347
8.37674E−70
3.56364E−67


Il18r1
−1.528906795
9.526772285
307.7518085
6.74503E−69
 2.7959E−66


Saraf
0.698107441
10.21648074
302.7946342
8.10819E−68
3.27693E−65


Asb2
−1.706305638
9.480765257
301.6467395
1.44213E−67
5.68623E−65


Itgb7
−1.03195597
9.956571795
298.2957969
7.74575E−67
2.98137E−64


Rasgef1a
0.954832896
9.166122273
293.4389939
8.85616E−66
3.32951E−63


Klrg1
1.479355795
9.202811068
292.035209
1.79105E−65
6.58048E−63


Tmem176b
−1.947455291
9.448088308
283.3636793
 1.3887E−63
4.98882E−61


Tnfsf11
−1.871570551
9.547025163
282.4665441
2.17822E−63
7.65502E−61


Dcp1b
1.217734056
9.182915755
273.4090354
2.05089E−61
7.05418E−59


Rps27
0.343182787
13.23487563
268.9950753
1.87901E−60
6.32836E−58


Fxyd5
−0.561431404
10.88896842
265.4526332
1.11178E−59
3.66797E−57


H2afy
−0.896629741
9.930098566
254.1059628
3.30622E−57
1.06897E−54


Txk
1.1165592
9.335401088
250.682348
1.84367E−56
5.84406E−54


Gm2a
−1.254112994
9.58187137
244.1366839
4.92896E−55
1.53234E−52


Cd2
0.602040611
10.31974063
234.8069914
5.33413E−53
1.62701E−50


Irf7
1.233359958
9.309194937
227.5376027
2.05288E−51
 6.1457E−49


Lag3
1.648447237
9.27219078
227.0251467
2.65538E−51
7.80488E−49


Rpl29
−0.426163608
11.21429155
226.6636948
3.18389E−51
 9.1912E−49


S100a6
−0.954302844
10.99625671
219.2973162
1.28724E−49
3.65078E−47


Ret
0.739017916
9.163901909
214.7890991
1.23901E−48
3.45342E−46


Tmem176a
−1.728150993
9.404487704
212.7090541
3.52245E−48
9.65151E−46


Ccr5
1.01474002
9.514413429
212.4623074
3.98726E−48
 1.0743E−45


Klrk1
−1.632071328
9.564474145
206.9732412
6.28407E−47
1.66538E−44


Wdr95
0.858966671
9.168703843
206.6330617
7.45528E−47
 1.9439E−44


Pde4b
−1.037180552
9.658605719
206.3101232
8.76851E−47
2.25003E−44


Neurl3
−1.11843401
9.61965738
204.6604978
2.00846E−46
5.07325E−44


Cd40lg
−1.325579191
9.46906787
203.2747273
4.02941E−46
1.00214E−43


H2-Q7
0.485660268
10.62100119
202.3256105
6.49151E−46
1.59003E−43


Dnajc15
−0.810147548
9.893127081
201.7430432
8.69899E−46
2.09892E−43


Gzma
−2.279019802
10.72577583
199.2659566
3.02008E−45
7.17979E−43


Sub1
0.447317923
11.14878706
198.1250066
5.35805E−45
1.25534E−42


Tnfrsf4
−0.896219752
10.62229818
189.4901987
4.10781E−43
 9.4867E−41


Ramp3
−1.526846449
9.936866207
184.7197481
4.51835E−42
1.02878E−39


Il10ra
0.940599026
9.177837324
184.0570113
6.30468E−42
1.41558E−39


Il12rb2
−1.311113717
9.345966917
182.373313
1.46977E−41
3.25483E−39


Rpl3
−0.276118955
12.09253931
182.2652047
1.55185E−41
3.39017E−39


Cd47
−0.591482576
10.23577103
171.4400476
3.58636E−39
7.73027E−37


Nr4a2
0.94692531
9.521282587
169.5951037
9.06986E−39
1.92925E−36


Amica1
−1.349724672
9.33525593
169.0337835
1.20282E−38
 2.5253E−36


Sema4a
0.976179233
9.198632285
167.4717442
2.63868E−38
5.46883E−36


Il7r
−0.953618116
9.753450222
166.8045235
3.69087E−38
7.55273E−36


Ctsw
−0.77682414
9.943509554
166.4720465
4.36268E−38
8.81588E−36


Icos
−0.730239997
10.25643633
164.2679456
1.32199E−37
2.63843E−35


Actb
−0.746061335
13.40490306
163.2109404
2.24977E−37
4.43534E−35


Satb1
−0.948024097
9.757058763
160.1639583
 1.0419E−36
2.02932E−34


Tagln2
−0.639877159
10.29867207
157.3789496
4.23005E−36
8.14082E−34


Rplp0
−0.262641417
12.38778931
157.2206301
4.58078E−36
8.71211E−34


Gtf2i
0.882631296
9.381266311
156.9371115
5.28314E−36
9.93107E−34


Gpr18
0.970290866
9.406589754
155.8660296
9.05614E−36
1.68278E−33


Klrc1
−1.245205556
9.658438919
154.722076
1.61038E−35
2.95835E−33


Sdcbp2
0.909955184
9.294064909
149.7774031
1.93916E−34
 3.5223E−32


Socs2
−1.266440957
9.351659082
148.7076923
3.32227E−34
5.96754E−32


mt-Co1
−0.296844605
12.21554609
147.9872407
4.77442E−34
8.48167E−32


Ahr
−1.187489037
9.328418697
147.556191
5.93126E−34
1.04222E−31


Rora
−0.769975041
9.982396399
147.3734285
6.50277E−34
1.13036E−31


Ctla4
−0.752514198
10.15303783
143.5610512
4.43161E−33
7.62142E−31


Gimap6
0.469906688
10.46581469
143.4578381
4.66797E−33
7.94341E−31


Srgn
−0.392519863
11.37089272
143.1641996
5.41165E−33
9.11299E−31


Ltb4r1
−1.111665991
9.272000172
142.6946671
6.85474E−33
1.14241E−30


Fam46a
−1.314561947
9.504335784
141.6679882
1.14942E−32
1.89607E−30


Samd3
0.636378603
9.164604728
140.6602121
1.90916E−32
3.11753E−30


Hk2
−1.16240928
9.291515007
139.523414
3.38402E−32
5.47061E−30


Itgae
−1.184859251
9.27549806
135.9237287
2.07344E−31
3.31873E−29


Fasl
0.707483582
9.594244101
135.8923984
2.10642E−31
3.33846E−29


Rbm47
0.718009897
9.170928286
135.5181016
2.54338E−31
3.99188E−29


Gpr34
−1.061027039
9.256545758
134.3366515
4.61142E−31
 7.1681E−29


Eif1
0.260507074
11.85893183
134.2575124
4.79894E−31
7.38855E−29


Gnas
0.39392693
10.37735049
133.5033298
7.01649E−31
1.07008E−28


Sp100
0.675383289
9.55366719
132.5975297
1.10731E−30
1.67297E−28


Tbxa2r
0.585759135
9.164267126
132.1983671
1.35391E−30
2.02661E−28


Nt5e
−1.088041733
9.297376625
132.0590116
1.45237E−30
2.15404E−28


Gxylt1
0.864574803
9.199924509
131.8738591
1.59435E−30
2.34311E−28


Asap1
0.888126055
9.229868598
130.5342162
3.13089E−30
4.55981E−28


Il2ra
−1.040299441
9.266106978
129.9752671
4.14915E−30
5.98886E−28


Rpl10
−0.310792871
11.48660702
129.9264066
4.25256E−30
6.08379E−28


Fam110a
−0.964708157
9.494264974
129.6194418
4.96378E−30
7.03899E−28


Cbx4
0.781047544
9.354636358
128.9857168
6.83082E−30
9.60235E−28


Slc3a2
0.511278475
10.08968291
128.1171727
1.05808E−29
1.47457E−27


Itgad
0.535714085
9.161955942
126.8819115
1.97163E−29
2.72422E−27


Tnfaip8
−0.821651414
9.630233952
126.0811572
2.95162E−29
4.04372E−27


Nebl
−1.069381966
9.313919832
124.5341642
6.43614E−29
8.74342E−27


Rpsa
−0.277280078
11.60015063
123.8483581
9.09342E−29
1.22503E−26


Epsti1
−0.651296117
9.946025493
123.5305898
1.06728E−28
1.42592E−26


Cst7
0.771669339
9.361569648
123.2695875
1.21733E−28
1.61306E−26


H2-T22
0.511037144
9.836593368
122.1981069
2.08902E−28
2.74561E−26


Klf3
0.838002162
9.422127484
120.9469914
 3.9248E−28
 5.1168E−26


Cd96
−0.884171126
9.446982611
120.5563123
4.77908E−28
6.18068E−26


Ifitm1
−2.559027388
9.599684322
118.0524471
1.68863E−27
2.16654E−25


Cxcr4
0.877743485
9.203511935
117.4615351
2.27469E−27
2.89548E−25


Dnase1l3
0.522754123
9.161900584
117.0414103
2.81136E−27
3.55066E−25


Ddit3
0.779019377
9.376075281
116.2467391
4.19693E−27
5.25951E−25


Plscr1
−0.95795568
9.521575487
115.5912639
5.84083E−27
7.26329E−25


Tspan3
0.784843484
9.325091853
114.3100538
1.11446E−26
 1.3753E−24


Klrd1
−1.164056439
9.372657862
113.7518146
1.47683E−26
1.80867E−24


Rps19
−0.246604045
12.57926856
113.2192993
1.93182E−26
2.34811E−24


Btg2
−0.527557012
10.53785684
112.9321685
2.23284E−26
2.69374E−24


Sat1
0.656951889
9.537032997
111.897264
3.76314E−26
4.50629E−24


Ngfrap1
0.646356558
9.495133067
111.7125177
4.13066E−26
4.91002E−24


S100a4
−1.018352282
9.866562997
111.1597843
5.45887E−26
6.44147E−24


Nfkbia
−0.597111959
10.83361265
105.0791749
1.17352E−24
1.37472E−22


Aprt
−0.701406151
9.637312921
104.6412923
1.46374E−24
1.70237E−22


Susd3
−0.901261435
9.36994386
104.5375265
1.54244E−24
1.78108E−22


H1f0
−1.071867051
9.429812238
104.4247351
1.63279E−24
1.87204E−22


Pfn1
−0.317456871
12.14558154
102.6778946
 3.9432E−24
4.48914E−22


H3f3b
0.257055136
12.34434425
102.3962134
 4.5457E−24
5.13886E−22


A930011G23Rik
0.339865641
9.15868181
102.3174094
4.73017E−24
5.31027E−22


Gm8369
0.521666409
9.924627075
101.6077892
6.76786E−24
7.54547E−22


Dkkl1
−0.896564378
9.308701044
100.1636514
1.40311E−23
1.55361E−21


Tm6sf1
0.797062802
9.205998818
99.8736915
1.62433E−23
1.78632E−21


Bhlhe40
−0.43201621
10.72350871
99.34549809
2.12079E−23
2.31654E−21


Irf2bpl
0.749110924
9.293163503
98.99862068
2.52678E−23
2.74147E−21


Ccr2
0.622882557
9.897726382
98.98187498
2.54823E−23
2.74632E−21


Irf2
0.698581849
9.326143404
98.03421665
4.11215E−23
4.40245E−21


Atp5l
−0.352277104
10.47765534
97.58180026
5.16767E−23
5.49609E−21


2010111I01Rik
0.659221506
9.402781177
96.19904171
1.03895E−22
1.09776E−20


St8sia1
−0.835504537
9.247015066
95.74994331
 1.3035E−22
1.36834E−20


Pdcd1
0.966655751
9.244430667
95.28801588
1.64607E−22
1.71679E−20


Rps27rt
0.36584719
11.16196987
95.19935627
1.72146E−22
1.78392E−20


Krtcap2
−0.449237684
10.06413459
95.17864624
1.73957E−22
 1.7912E−20


H2-Q10
0.746706806
9.219532223
94.78298372
2.12444E−22
2.17365E−20


Smco4
−0.864745743
9.324712373
94.70819526
2.20624E−22
2.24315E−20


Itm2b
−0.325043857
10.97659803
94.43754827
2.52948E−22
2.55573E−20


Trps1
0.807993435
9.24785037
94.38115316
2.60258E−22
2.61325E−20


Ehd1
−0.785381669
9.471478828
94.29520457
2.71808E−22
2.71238E−20


Lcp1
−0.445197114
10.29115797
93.45936544
4.14626E−22
4.11218E−20


Ccl4
1.798057092
9.567483078
93.36095469
4.35763E−22
4.29545E−20


Itgb2
0.557196956
9.575080932
93.16885995
4.80177E−22
4.70457E−20


Pttg1
0.665331536
9.448095727
93.09752183
 4.978E−22
4.81883E−20


Fubp3
0.676573702
9.185256957
93.09812625
4.97648E−22
4.81883E−20


Ly6g5b
−0.772528223
9.223289292
92.75608537
5.91533E−22
5.69209E−20


Wipf3
0.26176696
9.158140644
92.24996768
7.63914E−22
7.30736E−20


AB124611
0.682659164
9.180450532
92.21780357
7.76431E−22
 7.3834E−20


Asap2
0.462878352
9.163205905
92.17975453
7.91504E−22
7.48272E−20


Wbp5
0.710373707
9.336227139
92.08583153
8.29975E−22
 7.8008E−20


Lax1
0.750516768
9.205901785
91.84961807
9.35199E−22
8.73898E−20


mt-Co3
−0.242677521
12.09938987
91.67605628
1.02093E−21
9.48524E−20


Gm12840
−0.842973953
10.16274436
91.32502726
1.21909E−21
1.12616E−19


Ostf1
−0.48303019
10.18387303
91.04103711
1.40723E−21
1.29257E−19


Acot7
−0.644244133
9.577154168
90.9245269
1.49258E−21
1.36322E−19


Timp2
−0.865419253
9.295780623
90.80210372
1.58784E−21
1.44208E−19


Rexo2
−0.732259687
9.465193175
90.57002666
1.78545E−21
1.61249E−19


Abhd17c
−0.839404611
9.339494063
89.96047193
2.42966E−21
2.18211E−19


Ubc
0.3685984
11.04999023
89.59143681
2.92789E−21
2.61504E−19


Hspe1
0.538143649
10.27531776
89.36763916
3.27856E−21
2.91215E−19


Ms4a6b
0.412280945
10.19491628
89.30355751
 3.3865E−21
2.99159E−19


Klk8
−0.677530964
9.559198221
88.48589784
5.11986E−21
4.49824E−19


Prkch
0.58070113
9.449515994
86.82690444
1.18447E−20
1.03504E−18


Syf2
0.443448656
9.733081568
86.7777254
1.21429E−20
1.05539E−18


Prdx6
−0.457748392
10.19721197
86.54540808
1.36565E−20
 1.1806E−18


Adam8
−0.807293103
9.247155567
85.89615093
1.89638E−20
1.63068E−18


Ldlrad4
−0.879974484
9.298455799
84.9562291
3.05044E−20
2.60917E−18


Rcbtb2
−0.877505664
9.39898186
84.63477143
3.58898E−20
3.05365E−18


Gramd1a
−0.736031909
9.45889775
84.52414815
3.79551E−20
3.21247E−18


Socs3
0.669638314
9.492279241
84.41671087
4.00746E−20
 3.3742E−18


Kremen2
0.614419032
9.177276538
83.90371615
5.19468E−20
4.35115E−18


Ftl1
0.30419987
10.82047194
83.72493817
5.68634E−20
4.73741E−18


Fyn
0.561444187
9.486733177
83.7151954
5.71443E−20
4.73741E−18


Npc2
0.410579927
9.848489901
83.70139601
5.75446E−20
4.74625E−18


Gcnt2
−0.743016267
9.218046584
83.23349557
7.29117E−20
 5.9832E−18


Rpl13
−0.173445727
12.63772739
83.18432332
7.47482E−20
6.10292E−18


Cxcr3
0.586788812
9.551365757
83.01615013
8.13857E−20
6.61147E−18


Perp
0.636271306
9.176884673
81.52799393
1.72797E−19
1.39671E−17


Rps18
−0.182969674
12.47333304
81.01252335
2.24292E−19
1.80393E−17


H3f3a
−0.343723722
10.34149301
80.77491166
2.52949E−19
2.02434E−17


Prr5
−0.668175925
9.209950504
79.99053942
3.76207E−19
2.99594E−17


Maf
0.600777868
9.568684693
79.76182883
4.22374E−19
3.34711E−17


1700001O22Rik
0.372137118
9.160348241
79.58478248
 4.6197E−19
3.64303E−17


Slco3a1
−0.761871352
9.251168617
79.16254048
5.72045E−19
4.48916E−17


Rbm3
−0.335572075
10.73102924
78.7953872
6.88877E−19
 5.3799E−17


Cyb5a
−0.677604285
9.520917476
78.29568723
8.87153E−19
6.89506E−17


Anxa1
−0.915818021
9.278561592
77.85704634
1.10774E−18
8.56831E−17


Gramd3
0.483169371
10.20641741
77.84616622
1.11386E−18
8.57461E−17


Cd44
−0.628062155
9.560090954
77.66490234
1.22092E−18
9.35419E−17


Cd160
−1.060008934
9.334762898
77.45982745
 1.3545E−18
1.03287E−16


Gata3
−0.861175492
9.445565238
77.30607749
1.46415E−18
1.11124E−16


Podnl1
−0.768407408
9.399879407
76.93648778
1.76545E−18
1.33366E−16


Gpr55
−0.713985194
9.217387159
76.83201579
1.86136E−18
1.39957E−16


Cd247
0.514152093
9.534122941
76.54776484
2.14951E−18
1.60875E−16


Rps2
−0.231179288
11.63572242
75.92273731
2.94984E−18
2.19756E−16


Dapk2
−0.812348541
9.267248742
75.61455589
 3.4481E−18
2.55697E−16


Bcl2a1d
−0.536568274
9.947945196
74.71398893
5.44092E−18
4.01634E−16


Rpl35
−0.266038037
11.18858014
74.15706214
7.21425E−18
5.30116E−16


Ormdl3
0.662349433
9.242329201
73.61447025
9.49659E−18
6.94669E−16


Rpl24
−0.190402777
11.77226429
73.2218925
1.15863E−17
8.43716E−16


Tesc
−0.660354554
9.483456771
73.0535519
1.26179E−17
9.14715E−16


Cks2
−0.777355745
9.525757792
72.98672918
1.30525E−17
9.41991E−16


Gm12216
0.680896072
9.227687607
72.7754164
1.45275E−17
1.04379E−15


Plek
0.751449862
9.215821963
72.38413926
1.77132E−17
1.26704E−15


Sh3glb1
0.450965438
9.599133015
72.35881311
 1.7942E−17
1.27775E−15


Malat1
0.278672905
14.6685717
72.26960928
1.87716E−17
1.33097E−15


Rbpj
−0.711555719
9.385172047
71.94087461
2.21743E−17
1.56537E−15


Ppib
−0.424361083
9.880940736
71.9313067
2.22821E−17
1.56614E−15


mt-Atp6
−0.201773503
12.47131233
71.76755318
2.42101E−17
1.69429E−15


Sh2d2a
0.447240574
9.846353728
71.46835454
2.81741E−17
 1.9632E−15


Cish
−0.69379779
9.408299131
71.04548685
3.49083E−17
2.42201E−15


Hint1
−0.384281305
10.08270698
70.72226399
4.11225E−17
2.84097E−15


Cd74
−1.106243236
9.434237857
70.69797546
4.16319E−17
2.86392E−15


Lbh
0.579804787
9.408456529
70.37740415
4.89777E−17
3.35497E−15


Lpin1
0.632547096
9.197406237
69.60019426
7.26297E−17
4.95415E−15


Hsp90ab1
0.345884126
11.19694983
69.53672628
7.50048E−17
5.09466E−15


Ubb
0.242830128
12.90471764
69.26272166
8.61832E−17
5.82945E−15


Tm2d3
0.65663079
9.233563913
69.12669132
9.23372E−17
6.21968E−15


Clic1
−0.354187575
10.3255658
68.54893155
1.23768E−16
8.30222E−15


Mxi1
0.61312214
9.308254267
68.4810021
1.28106E−16
8.55768E−15


Kcnip3
0.214050413
9.158157362
68.20905605
1.47049E−16
9.78268E−15


Rgs2
−0.664820587
10.05989421
68.2006855
1.47674E−16
9.78403E−15


Cd69
−0.645530905
9.886453138
68.1516296
1.51394E−16
9.98955E−15


Irf1
0.591854113
9.431031538
67.47468468
 2.1341E−16
1.40243E−14


Gcg
0.648871754
9.162673096
67.15821837
2.50569E−16
1.63996E−14


Arpc3
−0.314794705
10.54009876
67.07583725
2.61261E−16
1.70304E−14


Clint1
−0.604253767
9.518647713
66.99244015
 2.7255E−16
 1.7695E−14


Myl6
−0.256992464
10.93122698
66.77019019
3.05077E−16
1.97275E−14


Nfkbiz
−0.598905696
9.633433533
66.72696278
 3.1184E−16
2.00845E−14


Reep5
−0.520338628
9.637155571
66.49848676
3.50162E−16
2.24632E−14


Nme1
−0.531092689
9.653532734
66.23423055
4.00398E−16
2.55843E−14


Nck1
0.612718075
9.252796487
66.02666346
4.44864E−16
2.83137E−14


Bcl2a1b
−0.398493382
10.39217608
65.1482998
6.94684E−16
4.40402E−14


Gng5
0.34112214
9.899707496
64.67244017
8.84433E−16
5.58506E−14


Cox5a
−0.369902109
10.08152668
64.56707148
9.33016E−16
5.86893E−14


D1Ertd622e
0.615527633
9.208393557
64.30341259
1.06661E−15
6.68325E−14


Ube2b
0.353641396
9.912283123
63.83320012
1.35412E−15
8.45202E−14


Pnrc1
0.298835463
10.57783069
63.57012017
1.54759E−15
9.62243E−14


Ier3
0.686673886
9.17570835
63.29753534
1.77727E−15
1.10082E−13


Cyb5r3
0.589129593
9.274984141
62.76482846
2.32921E−15
1.43718E−13


Sec62
0.390672881
9.756942892
62.73250459
2.36776E−15
 1.4554E−13


P2rx7
−0.686106279
9.260764108
62.71139686
2.39327E−15
1.46551E−13


Cd226
−0.718795459
9.268586644
62.40322215
2.79865E−15
1.70728E−13


Maff
−0.785642781
9.305243703
62.11356649
 3.2421E−15
1.97037E−13


Cir1
0.540883115
9.390079546
61.8636656
3.68079E−15
 2.2286E−13


Mier1
−0.56737739
9.536740084
61.39838388
4.66193E−15
2.81212E−13


Hvcn1
−0.697052978
9.29925934
61.38224575
 4.7003E−15
2.82472E−13


Leprotl1
0.387799851
9.724295192
61.16177005
5.25725E−15
3.14773E−13


Akap13
−0.346613669
10.30878346
61.06204963
 5.5304E−15
3.29906E−13


Cables1
0.58247393
9.182534864
60.94449572
5.87068E−15
3.48917E−13


Ubald2
0.334201988
10.62010958
60.89344557
6.02491E−15
3.56772E−13


Ass1
−0.613406117
9.534311369
60.42124224
7.65821E−15
4.51834E−13


Fam104a
0.504996169
9.38496573
60.18580376
8.63125E−15
5.05913E−13


Atp5h
−0.278014591
10.35719028
60.18440409
8.63739E−15
5.05913E−13


Dusp10
−0.717056732
9.475530411
60.11639783
8.94103E−15
5.21808E−13


6330403K07Rik
0.600891856
9.187821133
59.89795809
 9.9905E−15
5.80959E−13


mt-Cytb
−0.259020182
11.07894922
59.78485862
1.05814E−14
6.13116E−13


Sepp1
−0.723631668
9.293155529
59.50165472
1.22191E−14
 7.0548E−13


Il1r2
−0.903532683
9.256685507
59.46822742
1.24285E−14
7.15012E−13


Orai1
0.392968699
9.884602454
59.42944137
1.26758E−14
7.26658E−13


Crtam
0.457167582
9.163663097
59.2478005
1.39016E−14
7.94108E−13


Eif5
0.382500506
9.823460355
59.19925072
1.42488E−14
8.11078E−13


Actg1
−0.24698467
12.09934301
59.02051658
1.56037E−14
8.85083E−13


Vmp1
0.480500703
9.490450465
58.65631384
1.87765E−14
1.06133E−12


Cd3g
−0.238281838
11.10939413
58.41952928
2.11778E−14
1.19289E−12


Lysmd2
−0.676383806
9.243342087
58.30789378
2.24143E−14
1.25816E−12


Ccdc50
−0.636888834
9.24053109
58.24392228
2.31551E−14
1.29524E−12


Coro1a
−0.294730343
10.77307504
58.19082122
2.37886E−14
1.32609E−12


Ctsd
0.432871133
9.641722001
58.04221936
2.56552E−14
1.42523E−12


Adam19
0.588396014
9.250767663
57.92386217
2.72462E−14
1.50843E−12


Gm9844
−0.531404913
9.544148899
57.76929535
2.94735E−14
1.62064E−12


H2-Q6
0.39965633
9.740245985
57.7724562
2.94261E−14
1.62064E−12


Rnf149
−0.678390076
9.332967884
57.76244641
2.95763E−14
1.62078E−12


Faim
0.553709883
9.309636125
57.6673891
3.10407E−14
1.69528E−12


Gstm5
−0.595633706
9.20199523
57.63484148
3.15586E−14
1.71776E−12


Ssr4
−0.462687492
9.653712425
57.61772544
3.18344E−14
1.72696E−12


Ppp1ca
−0.313444097
10.29798996
57.51174091
3.35968E−14
1.81647E−12


Man1a
0.591903753
9.262299772
57.36248846
3.62455E−14
1.94666E−12


Ak2
−0.559791812
9.46480863
57.36453397
3.62078E−14
1.94666E−12


Hilpda
−0.610088711
9.667525426
57.29728897
3.74671E−14
2.00561E−12


Hspd1
0.490465034
9.781069436
57.21625898
 3.9043E−14
2.08307E−12


Ifrd1
−0.452953447
10.02590859
57.12858627
4.08229E−14
2.17086E−12


Sptssa
−0.528455842
9.597747238
57.11895346
4.10233E−14
2.17437E−12


Ero1l
−0.653981362
9.301167052
56.87647737
4.64064E−14
 2.4453E−12


Znrf1
−0.625877517
9.40064809
56.87516065
4.64374E−14
 2.4453E−12


Slc15a3
−0.645993624
9.22733484
56.72999974
 4.9995E−14
2.62409E−12


Snrpd3
−0.513107614
9.547220839
56.57419645
5.41174E−14
2.83127E−12


Nab1
0.476701688
9.481616428
56.13698376
6.75936E−14
 3.5249E−12


Tmbim4
−0.620175868
9.33363574
55.75215867
 8.2208E−14
4.27323E−12


Ptpn6
−0.655690323
9.338656784
55.65343816
8.64416E−14
4.47889E−12


Thap3
0.571712939
9.265378945
55.63069262
8.74476E−14
4.51654E−12


Son
0.380723151
9.69657111
55.47166754
9.48158E−14
 4.8815E−12


Erp44
0.484253067
9.382705163
55.39965547
9.83537E−14
5.04757E−12


H2-Q4
0.389723252
9.753745914
55.06953171
 1.1634E−13
5.95177E−12


Lmo1
0.219255613
9.158225061
55.00767127
 1.2006E−13
 6.1227E−12


Prf1
0.305417186
9.16134179
54.73770604
1.37738E−13
7.00212E−12


Sp110
0.488354994
9.437502438
54.636272
1.45034E−13
 7.3499E−12


Eif3h
−0.277769071
10.296933
54.59602322
1.48035E−13
7.47854E−12


Itga1
−0.499265851
9.19749427
54.25356867
1.76217E−13
8.87452E−12


Pde4d
0.552817694
9.266026673
54.1068785
1.89875E−13
9.53269E−12


Atf3
−0.817587319
9.293189291
54.0557667
1.94879E−13
9.75362E−12


Ets1
0.28518737
10.24991887
53.90587312
2.10328E−13
1.04943E−11


Ubash3b
0.502003409
9.181348024
53.89976936
2.10982E−13
1.04946E−11


Clec12a
−0.430462755
9.187014324
53.88824045
2.12224E−13
 1.0524E−11


Dgat1
−0.55834131
9.778715844
53.80814124
2.21055E−13
1.09284E−11


Cdc42ep3
0.575632949
9.28694131
53.17349427
3.05351E−13
1.50497E−11


Hsp90aa1
0.420791665
10.76849068
53.14096424
 3.1045E−13
1.52545E−11


Kdm6b
−0.638583048
9.740481683
53.04665018
 3.2572E−13
1.59563E−11


Spcs2
−0.360764471
9.914030831
52.97319432
3.38132E−13
1.65143E−11


H2afz
−0.360541992
10.76566171
52.78471826
3.72186E−13
1.81228E−11


Gm13546
−0.513269881
9.199885349
52.69946318
3.88697E−13
1.88699E−11


Rhoh
0.473436285
9.501551957
52.55043386
 4.1934E−13
2.02966E−11


Gm14718
−0.588453419
9.20570763
52.38609479
4.55941E−13
2.19367E−11


Cd48
−0.494282495
9.721189722
52.38800866
4.55497E−13
2.19367E−11


Traf1
−0.367189394
10.10520209
52.10848359
5.25175E−13
2.51183E−11


Cd9
0.629962799
9.231253154
52.1093635
 5.2494E−13
2.51183E−11


Armc7
0.550696024
9.197060421
52.04413059
5.42672E−13
2.58786E−11


Eef2
−0.182985174
11.29634654
52.01630705
5.50416E−13
2.61707E−11


Hnrnpdl
0.406565088
9.556908077
51.93389098
5.74011E−13
2.72125E−11


Cox6b1
−0.298181628
10.15773008
51.53029184
7.05009E−13
3.33251E−11


Anp32a
−0.368441055
9.87826882
51.36308833
7.67685E−13
3.61819E−11


Il10
0.872476336
9.17451578
51.1391009
8.60471E−13
4.04371E−11


Ndufs5
−0.512031204
9.463767548
51.08750093
 8.8339E−13
4.13939E−11


Fam3c
−0.605630051
9.322868853
51.02033744
9.14139E−13
4.27109E−11


Gna13
−0.397146052
9.985113984
50.90425396
9.69832E−13
4.51185E−11


Cpd
−0.473218402
9.194132269
50.90138385
9.71251E−13
4.51185E−11


Gpr174
0.55340071
9.263821812
50.88606644
 9.7886E−13
4.53417E−11


Osr2
0.528324536
9.161148525
50.41408333
1.24498E−12
5.75037E−11


Plxnc1
0.364392898
9.165511777
50.1943726
1.39247E−12
6.41328E−11


Gnai2
−0.334762855
10.17428897
50.13923682
1.43215E−12
6.57729E−11


Cox4i1
−0.221749475
10.68633283
50.06740638
1.48554E−12
6.80319E−11


H2-K1
0.188614934
11.60998915
50.02198623
1.52033E−12
6.94284E−11


Cytip
−0.328069424
10.18842314
50.00987741
1.52974E−12
6.94657E−11


Nrn1
0.483613566
9.165074057
50.01143543
1.52853E−12
6.94657E−11


Rab14
0.426761389
9.461449449
49.89200515
1.62445E−12
7.35599E−11


Gimap7
0.313625671
10.07498565
49.73569548
1.75916E−12
7.94374E−11


Yes1
−0.604422292
9.221082612
49.55380987
1.93005E−12
8.69112E−11


Cxcl10
−0.914697883
9.358345131
49.37721533
2.11184E−12
9.48335E−11


Gimap4
0.259745694
10.52499935
49.36824352
2.12152E−12
9.50043E−11


Rps26
−0.21575601
10.99404089
49.26863753
2.23203E−12
9.96766E−11


Gabarapl2
−0.350190949
9.899410329
48.56016717
3.20309E−12
1.42648E−10


Aldoa
−0.304682663
10.23625965
48.51986093
3.26961E−12
 1.4521E−10


Mef2d
0.532711694
9.220655304
48.44143467
3.40301E−12
1.50721E−10


Tmbim6
0.267484208
10.08427654
48.41247816
3.45364E−12
1.52129E−10


Rnf145
0.529781681
9.217590475
48.41300404
3.45271E−12
1.52129E−10


Klk1b27
0.380972786
9.165727377
48.39798189
3.47926E−12
1.52689E−10


Ckb
−0.660760349
9.33571335
48.39461397
3.48524E−12
1.52689E−10


Rnf19b
−0.589896188
9.379257024
48.23892168
3.77324E−12
 1.6486E−10


Pld3
0.485699376
9.363216876
48.13576818
3.97705E−12
1.73297E−10


Dennd5a
−0.564488698
9.227020583
47.77273449
4.78602E−12
2.07986E−10


Cd68
0.374640404
9.164093483
47.73200657
4.88649E−12
2.11783E−10


Ifng
−0.824643513
9.686644277
47.71134049
4.93827E−12
2.13455E−10


Nod1
0.399719281
9.170204215
47.68415533
5.00722E−12
2.15858E−10


Ndufa3
−0.350060637
9.879747436
47.57998143
 5.2805E−12
2.27033E−10


Pdlim1
−0.602115592
9.286492478
47.41649323
5.73977E−12
2.46125E−10


Dnaja1
0.34905358
10.76370187
47.35226766
5.93095E−12
 2.5365E−10


Pnrc2
0.469933719
9.363165739
47.30698162
6.06956E−12
2.58893E−10


Trpc1
0.383243845
9.166364579
47.20240867
6.40217E−12
2.72362E−10


Cd84
0.499531179
9.348586397
47.08726344
6.78955E−12
2.88083E−10


S100a13
−0.354122862
9.897856812
46.79593256
7.87767E−12
3.33378E−10


Hsph1
0.561731891
9.47244434
46.69789632
8.28179E−12
3.49565E−10


Ccnd3
−0.500150776
9.527417169
46.67505351
8.37889E−12
3.52742E−10


Slc25a51
−0.575066526
9.32805566
46.52560617
 9.0429E−12
3.79708E−10


Serpinb1a
−0.924931877
9.512638923
46.22319099
1.05521E−11
4.41929E−10


Fdx1
−0.61661336
9.293651654
46.1565072
1.09174E−11
4.56047E−10


Fgl2
−0.588978631
9.496125029
46.11929581
1.11267E−11
4.63594E−10


Calm2
0.260443806
10.41347078
45.85998996
1.27014E−11
5.27842E−10


Nrarp
0.497355543
9.184041384
45.77903133
1.32373E−11
5.48703E−10


Cfl1
−0.209942284
11.11285008
45.74902911
1.34416E−11
5.55746E−10


Gm8730
−0.272607384
10.44469147
45.58287839
1.46315E−11
 6.034E−10


Rps9
−0.140221794
11.99538144
45.57537937
1.46876E−11
6.04173E−10


Dctpp1
−0.584823203
9.308258583
45.45062678
1.56535E−11
6.42272E−10


Myeov2
−0.391999007
9.682148255
45.31640752
1.67639E−11
6.86088E−10


Lsp1
−0.305708206
10.32146671
45.30229843
1.68851E−11
6.89304E−10


Ccl1
−1.071553426
9.258105615
45.24994825
1.73425E−11
7.06194E−10


Ccna2
−0.408457876
9.193761792
45.04913135
1.92152E−11
7.80487E−10


Klrc2
−0.651905895
9.283426969
45.01296321
1.95734E−11
7.93043E−10


Zfp36l2
0.427884779
9.814090687
44.98399358
1.98652E−11
 8.0285E−10


2310031A07Rik
0.362915586
9.165479785
44.90459464
2.06872E−11
8.33988E−10


Lamb3
0.532127003
9.282561154
44.76329977
2.22351E−11
8.94163E−10


Rpl10a
−0.187109705
11.1422209
44.63983869
2.36823E−11
9.49997E−10


Tmem33
0.477950768
9.3077973
44.5371315
2.49579E−11
9.98685E−10


Larp7
0.487803635
9.322608334
44.48668833
2.56093E−11
1.02222E−09


Laptm5
0.221475236
10.49800706
44.38990272
2.69071E−11
1.07138E−09


2810417H13Rik
−1.100112922
9.337396993
44.380798
2.70326E−11
1.07373E−09


Tnfaip8l2
−0.584535976
9.325792226
44.31580305
2.79451E−11
1.10726E−09


Plekha2
0.500523877
9.289919496
44.30617094
 2.8083E−11
  1.11E−09


Ptma
−0.225883777
11.28824476
44.22970703
2.92016E−11
 1.1514E−09


E130308A19Rik
0.31445378
9.162753622
44.16856614
3.01281E−11
1.18504E−09


Nsmaf
0.506430735
9.239663944
44.08781407
3.13969E−11
1.23195E−09


Eif4a2
0.360471487
9.72382619
43.94614377
3.37537E−11
1.32122E−09


Susd1
0.169765045
9.158248282
43.86105877
3.52534E−11
1.37658E−09


Il4ra
−0.514186967
9.499579295
43.78225573
3.67018E−11
1.42969E−09


Gas7
0.534018731
9.194255021
43.70792329
3.81225E−11
1.48146E−09


Ncl
0.278368496
10.07281784
43.57228777
4.08584E−11
1.58397E−09


H2-DMa
−0.576877869
9.273413107
43.48277925
4.27707E−11
1.65414E−09


Nfkb1
−0.476422063
9.537085465
43.45398589
4.34047E−11
1.67167E−09


Klhl6
−0.579490641
9.316904493
43.45280579
4.34308E−11
1.67167E−09


Rsu1
−0.553456622
9.325990907
43.2691892
4.77036E−11
1.83177E−09


Zfp36l1
−0.538126975
9.536569365
43.14567424
5.08121E−11
1.94651E−09


Myo1g
−0.502350092
9.439423987
42.90718154
5.73996E−11
2.19367E−09


Bcl11b
0.437395638
9.518527425
42.87577242
5.83286E−11
2.22391E−09


Camk2n1
0.51765763
9.340518386
42.78669427
 6.1046E−11
2.32205E−09


Cox6c
−0.25524067
10.25790139
42.70764093
6.35635E−11
2.41213E−09


Xcl1
−1.217474518
9.40505696
42.44448966
 7.2717E−11
2.75303E−09


Ddx5
0.192028691
11.19922275
42.13065591
8.53743E−11
3.22467E−09


Hic1
−0.58737025
9.270379257
42.04651106
8.91281E−11
3.35861E−09


Hspa8
0.2217404
12.33062837
41.87878413
9.71106E−11
3.65091E−09


Tmem64
−0.615622886
9.248115386
41.48317304
 1.1889E−10
4.45934E−09


Chpt1
0.429457135
9.179331566
41.39841629
1.24158E−10
4.64615E−09


Ube2c
−0.66752016
9.233385993
41.22575977
1.35623E−10
5.06348E−09


BC094916
0.462966748
9.179306194
41.13909389
1.41772E−10
5.28085E−09


Kmt2e
0.392340073
9.498176274
40.93206348
1.57614E−10
5.85744E−09


Rps13
0.126889713
11.92521755
40.88192763
 1.6171E−10
5.99587E−09


Arhgdib
−0.23489064
10.73178038
40.82445287
1.66536E−10
6.16069E−09


Rps11
−0.128635338
12.26306636
40.75299459
1.72739E−10
6.37555E−09


Nrip1
−0.511508437
9.582600354
40.74521701
1.73427E−10
 6.3864E−09


Map1lc3b
0.268218052
9.979640755
40.65040396
 1.8205E−10
6.68867E−09


Spcs3
−0.531192179
9.347697431
40.61133177
1.85726E−10
6.80829E−09


Cnbp
0.239051499
10.25781376
40.46190118
2.00488E−10
7.33276E−09


Gimap9
0.386062289
9.581018999
40.26864864
2.21332E−10
8.07689E−09


Siah2
0.494945204
9.298903622
40.20996507
2.28082E−10
8.30444E−09


Il22
−1.480069678
9.482896849
40.13656655
2.36814E−10
8.60301E−09


Ermn
−0.714912853
9.304618523
39.83166035
2.76821E−10
1.00338E−08


Lrrk1
0.468677107
9.191477397
39.74374104
2.89567E−10
1.04724E−08


Gnb1
−0.391064061
9.703237593
39.63283371
3.06487E−10
1.10595E−08


Gimap5
0.370228394
9.666351398
39.62670839
 3.0745E−10
1.10696E−08


Phlda1
−0.636144657
9.440824176
39.56734338
3.16939E−10
1.13859E−08


Mns1
−0.550791808
9.250778634
39.43515476
3.39136E−10
1.21294E−08


Ugcg
0.492972956
9.205476436
39.43590289
3.39006E−10
1.21294E−08


Gngt2
−0.558255736
9.363452811
39.36832194
3.50944E−10
 1.2524E−08


Rpl28
−0.209984435
10.72557562
39.30306294
3.62872E−10
1.29211E−08


Rasd2
0.252071753
9.160323378
39.25591272
3.71741E−10
1.32078E−08


Cdca3
−0.432676987
9.196735064
38.86561366
4.54008E−10
1.60954E−08


Pyhin1
0.507982275
9.241830884
38.84662598
4.58446E−10
1.62171E−08


Gpr155
0.391019223
9.171320995
38.72724925
4.87358E−10
1.71855E−08


Fdps
−0.577186785
9.325334883
38.7248911
4.87947E−10
1.71855E−08


Pafah1b1
0.325223913
9.629847563
38.45459246
5.60425E−10
1.96953E−08


Ahcyl2
0.477977983
9.277929397
38.43033025
5.67436E−10
1.98984E−08


Tbca
−0.330314256
9.754797449
38.36938604
5.85436E−10
2.04852E−08


Sec61g
−0.241152419
10.28521272
38.33449562
5.95997E−10
2.08097E−08


Ggt1
−0.481485267
9.203331028
38.18802532
6.42455E−10
2.23835E−08


Stmn1
−0.969653028
9.430288892
38.12215366
6.64513E−10
2.31022E−08


Ms4a4b
0.250633898
10.75182838
38.11258677
 6.6778E−10
2.31659E−08


Setbp1
0.254687577
9.158648722
38.06296275
6.84981E−10
2.37118E−08


Emp1
−0.541943392
9.358546116
37.96775029
7.19237E−10
2.48444E−08


Itpk1
0.476912809
9.247476152
37.77295203
7.94761E−10
2.73423E−08


Smim3
−0.541785751
9.350048092
37.77252938
7.94933E−10
2.73423E−08


Tap1
0.398451698
9.443533326
37.73515593
 8.1031E−10
 2.7812E−08


2010107E04Rik
−0.300004943
9.866343542
37.56919881
8.82267E−10
3.02177E−08


Gimap3
0.303898627
9.896326654
37.49661931
9.15716E−10
 3.1297E−08
















TABLE 3I







LPL-8 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















2810417H13Rik
4.421635993
9.33967971
7636.915091
0
0


Hist1h2ap
2.09574419
9.186994176
1698.909855
0
0


Ccnb1
2.047353729
9.183341398
1613.079657
0
0


Hmgb2
2.042066843
10.71344588
4244.556365
0
0


Dut
2.014738394
9.371284608
1684.500852
0
0


Tk1
1.960291577
9.18674202
1653.526255
0
0


Tmpo
1.849269119
9.399807016
1521.174414
0
0


Malat1
−1.842629645
14.66785796
1809.716204
0
0


Alyref
1.825896572
9.471862774
1532.732128
0
0


Tacc3
2.134080213
9.190377363
1956.52509
0
0


2700094K13Rik
1.744910584
9.385940771
1515.690781
0
0


Btg1
−1.646278161
12.24806463
1559.814146
0
0


H2afz
1.610007538
10.76844958
1970.85919
0
0


Hmgb1
1.500577692
10.29770776
3186.436388
0
0


Anp32b
1.470164134
9.653444707
1632.790581
0
0


Rps27
−1.218652996
13.23455517
2460.77123
0
0


Ptma
1.34946352
11.28926493
3489.188041
0
0


Ube2s
1.317791113
10.00342164
1614.321852
0
0


Erh
1.270303306
9.742194835
1517.556473
0
0


Ran
1.738531804
9.802858584
3198.770133
0
0


H2afx
2.183010877
9.352344222
1727.503557
0
0


Stmn1
4.321604337
9.432950351
6902.354621
0
0


Cdk1
2.239500798
9.197717135
1974.285437
0
0


Birc5
3.697269867
9.252643265
5794.46549
0
0


Ube2c
3.240090144
9.234259206
2977.10756
0
0


Rrm2
3.204542691
9.248571475
3515.307592
0
0


Cks1b
3.075180267
9.262592977
4175.962604
0
0


Nusap1
2.820830963
9.207702494
2838.147599
0
0


Ccnb2
2.788955405
9.212862629
2442.72995
0
0


Cdc20
2.234954113
9.190262317
1579.632094
0
0


Tuba1b
2.745376143
9.732138323
4450.514283
0
0


Asf1b
2.67891665
9.2238456
2993.556039
0
0


Ccna2
2.623409165
9.194246974
3128.32616
0
0


Cdca8
2.623040933
9.208417544
2645.789881
0
0


Top2a
2.621298744
9.286093445
2205.726859
0
0


Smc2
2.577662882
9.241183844
2533.553825
0
0


Hmgn2
2.509685643
9.446134814
2642.35048
0
0


Ppia
0.798577016
11.56625059
1783.957265
0
0


Spc24
2.479141858
9.204585668
2657.29096
0
0


Tyms
2.261136472
9.239440332
1821.034615
0
0


Mki67
2.362693927
9.203436617
2323.523705
0
0


Tubb5
2.46042399
10.00447555
3985.581762
0
0


Cdca3
2.476526339
9.197186463
2533.838424
0
0


Gmnn
1.936716643
9.252450911
1428.654999
0
0


Spc25
1.802840265
9.180565556
1423.731434
0
0


Aurkb
1.728322959
9.176515087
1422.512724
0
0


Rbm3
0.993484866
10.73203615
1418.078619
0
8.5198E−308


Tpx2
1.875133132
9.181174219
1402.012636
 7.675E−307
2.5849E−304


Fbxo5
1.86163473
9.18189049
1400.863621
1.3638E−306
4.4995E−304


Rrm1
1.877528798
9.220046023
1360.531885
7.9254E−298
2.5624E−295


Rpl37a
−0.759463956
12.61574203
1355.666009
 9.045E−297
2.8671E−294


H2afv
1.493806059
9.565358508
1347.992844
4.2058E−295
1.3075E−292


Ranbp1
1.404278127
9.627530072
1294.507322
1.7655E−283
 5.385E−281


Fau
−0.627429509
12.30172216
1267.495359
1.3092E−277
3.9193E−275


Cdkn3
1.737691789
9.177555326
1258.830289
1.0002E−275
2.9399E−273


Rps14
−0.606632061
12.65499309
1255.627678
4.9668E−275
1.4338E−272


Tipin
1.929151372
9.251510347
1251.62808
3.6751E−274
1.0423E−271


Anp32e
1.418380455
9.517546841
1249.901683
8.7187E−274
2.4301E−271


Rad51
1.568013575
9.174694718
1222.970551
6.2115E−268
 1.702E−265


Ybx1
0.833180643
10.43974649
1218.225603
6.6741E−267
1.7982E−264


Mcm3
1.966718862
9.247410025
1217.41851
9.9952E−267
2.6489E−264


Rpl13a
−0.62938187
13.13153314
1206.09606
2.8871E−264
7.5278E−262


Cenpe
1.653275333
9.175480245
1197.730234
1.8993E−262
4.8735E−260


Racgap1
1.862785236
9.232911791
1182.243973
4.4076E−259
1.1133E−256


Kif22
1.608511734
9.177558442
1165.313674
2.1072E−255
5.2407E−253


Lig1
1.894174794
9.221722332
1152.147372
1.5317E−252
3.7519E−250


Mcm5
1.93647149
9.223522441
1145.109135
5.1862E−251
1.2513E−248


Dek
1.330339959
9.608297419
1108.987405
3.6773E−243
8.7423E−241


Lsm5
1.16498093
9.641405273
1067.935311
3.0765E−234
7.2079E−232


Rps27rt
−1.505651269
11.16249609
1067.058312
4.7717E−234
 1.102E−231


Pmf1
1.64552413
9.215533941
1064.284361
1.9125E−233
4.3545E−231


Shcbp1
1.506527243
9.17318021
1057.136768
6.8412E−232
 1.536E−229


Mcm7
1.747507535
9.230448074
1054.889735
2.1063E−231
4.6646E−229


Cenpf
1.666917175
9.175513788
1052.18582
8.1514E−231
1.7808E−228


Rpl34
−0.574832472
11.98009302
1041.129553
2.0623E−228
4.4453E−226


Ska1
1.293432357
9.167812846
1022.411565
2.4146E−224
5.1362E−222


Hcst
−1.243433262
10.61003451
1008.706121
2.3008E−221
4.8305E−219


Rpl18a
−0.561627543
12.84261735
1008.01621
3.2497E−221
6.7351E−219


Gapdh
0.881759066
10.56398779
1002.98404
4.0331E−220
8.2531E−218


Esco2
1.327312143
9.168283663
1000.336843
1.5172E−219
3.0659E−217


Mad2l1
1.648573874
9.208311898
997.1899147
7.3296E−219
1.4628E−216


Ezh2
1.668172168
9.233421923
993.4658486
4.7267E−218
9.3185E−216


Smc4
1.616908446
9.388203106
991.8276439
1.0731E−217
2.0901E−215


Hint1
0.850720336
10.08364789
978.6553338
7.8321E−215
1.5073E−212


Hmmr
1.307226984
9.167659346
947.1292515
5.5818E−208
1.0616E−205


Cenpa
1.819799027
9.395189412
944.3750433
2.2155E−207
4.1646E−205


Anapc5
1.398347276
9.36340878
942.2143264
6.5338E−207
1.2141E−204


Rad51ap1
1.283404233
9.169013279
921.3676391
2.2224E−202
4.0826E−200


Snrpe
0.905699046
9.828152436
913.3257782
1.2445E−200
2.2604E−198


Plk1
1.326982021
9.169293368
908.8251646
 1.184E−199
2.1267E−197


Uhrf1
1.454022969
9.180325757
906.7397897
3.3626E−199
5.9736E−197


Nuf2
1.191073084
9.166477547
896.459242
5.7748E−197
1.0147E−194


Pcna
1.440069441
9.444285329
882.2308741
7.1558E−194
1.2439E−191


Rpl36
−0.620306689
11.87416485
879.5581675
 2.727E−193
4.6899E−191


Pfdn5
−0.85624987
10.55314292
864.7146686
4.5983E−190
7.8249E−188


Dbi
1.368833292
9.462823711
858.1134292
1.2523E−188
2.1088E−186


Nap1l1
1.185055027
9.498411667
850.4819
5.7122E−187
9.5199E−185


Dnajc9
1.378564642
9.367319875
848.3018439
1.7012E−186
2.8062E−184


Lgals1
1.19567371
11.62962461
845.9087386
5.6366E−186
9.2042E−184


Pfn1
0.80604367
12.14562436
840.3634126
9.0489E−185
1.4628E−182


Knstrn
1.473768485
9.18618408
839.6230027
1.3109E−184
2.0982E−182


Cenpm
1.329309763
9.175946219
827.6359859
5.2921E−182
8.3874E−180


Lsm2
1.380526709
9.294336576
823.0375001
5.2891E−181
8.3013E−179


Cenpw
1.490656497
9.256061112
817.7818314
7.3455E−180
1.1418E−177


Clspn
1.292669733
9.172837657
812.9828057
 8.117E−179
1.2497E−176


Pbk
1.157650531
9.166198533
812.7880338
8.9483E−179
1.3647E−176


Hnrnpa3
0.835034638
10.15657482
797.3158283
2.0685E−175
3.1251E−173


Rps15a
−0.540860736
12.40397278
794.0829964
1.0436E−174
1.5621E−172


Ywhah
1.011739916
9.722350699
785.426649
7.9544E−173
1.1797E−170


Prc1
1.603165548
9.193597027
784.9083275
1.0311E−172
1.5153E−170


Kif11
1.323931035
9.173024115
770.7097078
1.2602E−169
1.8354E−167


Prdx1
0.952910094
9.945888311
770.5570053
1.3603E−169
1.9635E−167


Kif20a
1.187224656
9.167869132
764.7075308
2.5439E−168
3.6393E−166


Clic1
0.808262932
10.32602803
762.7488106
6.7824E−168
9.6179E−166


Hmgb3
1.455055923
9.208966791
761.6651289
1.1668E−167
1.6403E−165


Mcm6
1.533695009
9.312060518
761.2803647
1.4147E−167
1.9716E−165


H2-K1
−0.78477459
11.61022938
757.7886343
8.1261E−167
1.1228E−164


Cfl1
0.657597691
11.11327051
745.6811454
3.4872E−164
4.7775E−162


Casc5
1.197590409
9.16829785
740.8335564
3.9494E−163
5.3652E−161


Ccdc34
1.447741361
9.198023808
739.5048275
7.6816E−163
1.0348E−160


Rfc4
1.371829427
9.206979896
738.7492504
1.1214E−162
1.4982E−160


Ncapg
1.232809113
9.171161894
738.4232469
1.3202E−162
1.7493E−160


Cdca5
1.073990128
9.165655149
727.7176521
2.8086E−160
3.6913E−158


Rps27l
1.151450566
9.54350515
726.2661243
5.8091E−160
7.5734E−158


Cdc45
1.123918696
9.168465132
721.1692978
7.4541E−159
9.6403E−157


Slc25a5
0.764127042
10.39499188
716.7972352
6.6542E−158
8.5375E−156


Incenp
1.47758554
9.217026236
712.9734373
4.5142E−157
5.7462E−155


Nucks1
1.286634546
9.378701122
709.2481525
2.9151E−156
3.6817E−154


Tcf19
1.38178144
9.189300183
700.8400864
1.9635E−154
2.4606E−152


Prim1
1.368970463
9.192585042
691.3929603
2.2252E−152
2.7672E−150


Slbp
1.125615982
9.610102043
684.7426234
6.2169E−151
7.6719E−149


Rpl38
−0.602301624
11.67482758
672.1123304
3.4693E−148
4.2488E−146


Rfc5
1.29872706
9.203272872
669.8028531
1.1028E−147
1.3404E−145


Depdc1a
1.080566977
9.167299078
669.40795
1.3439E−147
1.6213E−145


Atp5b
0.684199477
10.2144056
667.0462036
 4.385E−147
 5.251E−145


Actb
1.341281009
13.40284709
666.0303963
7.2926E−147
8.6685E−145


Set
0.9980865
9.773450143
658.1483932
3.7758E−145
4.4555E−143


Fen1
1.346059401
9.228228642
652.6360738
5.9679E−144
 6.991E−142


Rbbp7
1.176391939
9.398753469
651.1468968
 1.258E−143
1.4631E−141


Mcm2
1.500969672
9.228064884
646.9215772
1.0438E−142
1.2053E−140


Rpl17
−0.466460143
12.29687914
646.8673029
1.0725E−142
1.2297E−140


Mrpl18
1.089849217
9.412606938
646.1342942
1.5482E−142
1.7626E−140


Hist1h1b
1.090360538
9.168316754
640.2582007
2.9362E−141
3.3193E−139


Fam64a
0.975294834
9.164201841
640.020908
3.3067E−141
3.7122E−139


Sgol1
1.052089005
9.166666095
636.43391
 1.993E−140
 2.222E−138


Cdc6
0.978089655
9.16484216
635.7066496
2.8687E−140
3.1764E−138


Mybl2
0.99941864
9.165876554
633.8085966
7.4215E−140
8.1616E−138


Shisa5
−0.780179318
11.05001528
633.6115951
 8.191E−140
 8.947E−138


Ddx39
1.198953115
9.33417475
630.1692678
4.5921E−139
4.9822E−137


Ndufa4
0.938937003
9.736118829
626.7178333
2.5862E−138
2.7873E−136


Hnrnpf
0.638042829
10.40327074
624.7187992
7.0379E−138
7.5347E−136


Banf1
1.165575172
9.354679405
619.6666195
8.8362E−137
9.3978E−135


Neil3
0.927084379
9.16396466
617.4284759
2.7105E−136
 2.864E−134


Ncapd2
1.219901417
9.183814831
616.4156886
4.5013E−136
4.7252E−134


Cep55
1.064886567
9.16709682
610.2205471
1.0018E−134
1.0448E−132


Lockd
1.459848715
9.293704619
608.8913956
1.9493E−134
 2.02E−132


H2-D1
−0.53825284
12.28212341
606.8538604
5.4081E−134
5.5686E−132


Cit
1.144554276
9.172719925
604.7868245
1.5228E−133
 1.558E−131


Nrm
1.336446732
9.221031657
603.5070411
2.8906E−133
 2.939E−131


Cbx3
1.370284119
9.517713266
603.3545264
3.1201E−133
3.1525E−131


Vps37b
−1.31771025
10.60451234
603.0754448
3.5881E−133
3.6028E−131


Ckap2l
0.940613678
9.164154324
599.4326761
2.2243E−132
2.2196E−130


Siva1
1.268781533
9.267321464
597.7669302
5.1228E−132
5.0807E−130


Ddx5
−0.748471247
11.19882055
596.8397774
8.1503E−132
 8.034E−130


Cox5b
0.721979233
10.04400742
596.6538048
 8.946E−132
8.7649E−130


Dhfr
1.14149443
9.174522367
594.1002916
 3.214E−131
 3.13E−129


Tagln2
0.894454006
10.30009936
591.5405549
1.1583E−130
1.1213E−128


Phgdh
1.224257094
9.327085258
589.7968759
2.7739E−130
2.6692E−128


Pnrc1
−0.970278369
10.57662978
589.1253447
3.8829E−130
3.7143E−128


Hnrnpab
1.039331347
9.483542457
585.1329548
2.8679E−129
2.7272E−127


Orc6
1.275932538
9.234245434
582.8772248
8.8762E−129
8.3914E−127


Rpa3
1.251758221
9.261572437
579.603602
4.5741E−128
4.2991E−126


Bub1
0.865618965
9.163406287
565.9473494
4.2745E−125
3.9943E−123


Ywhae
0.856367486
9.677989159
564.7314682
7.8591E−125
7.3017E−123


Eif1
−0.551908921
11.85871741
564.4588485
 9.009E−125
8.3223E−123


Atpif1
0.97015635
9.536110894
564.2183893
1.0162E−124
9.3341E−123


Coro1a
0.724915443
10.77406128
561.0456488
4.9792E−124
4.5476E−122


Chaf1a
1.055816166
9.171628848
557.4474793
3.0191E−123
 2.742E−121


Nudt21
0.915354374
9.525574065
556.9359865
3.9008E−123
3.5229E−121


Usp1
1.247336539
9.280558501
556.4284151
5.0299E−123
4.5174E−121


Kif2c
0.832711735
9.162579143
554.3565171
 1.42E−122
1.2682E−120


Kifc1
1.023267071
9.168333886
552.2123696
4.1563E−122
3.6918E−120


Melk
0.932950445
9.165498099
551.2116811
6.8612E−122
6.0611E−120


Cenph
0.913153757
9.165027676
548.8637447
2.2242E−121
1.9541E−119


Dlgap5
1.093157682
9.173768452
546.4514966
7.4463E−121
6.5068E−119


Gins2
1.150040727
9.177204875
542.5356577
5.2943E−120
4.6015E−118


Rps17
0.641426861
10.61650637
541.2097388
1.0286E−119
8.8924E−118


Rpl37
−0.446037144
12.07327741
536.8593604
9.0923E−119
7.8184E−117


Tpi1
1.264543892
9.324340119
533.6405003
4.5598E−118
3.9002E−116


E2f1
1.124053463
9.176359719
532.0684582
1.0022E−117
 8.527E−116


Mxd3
0.855249103
9.163935023
525.4969701
2.6954E−116
2.2813E−114


Dtymk
1.209633615
9.241120176
524.6423187
4.1357E−116
3.4822E−114


Fignl1
1.011624926
9.16854214
524.1311225
5.3428E−116
4.4752E−114


Rpl19
−0.3918592
12.11778681
523.3530167
7.8896E−116
6.5744E−114


Snrpd1
0.928277472
9.48039714
521.1514562
 2.377E−115
1.9706E−113


2700029M09Rik
1.118173547
9.300983612
519.4396362
5.6035E−115
4.6217E−113


Ubb
−0.799096052
12.90434358
518.3005588
9.9147E−115
8.1361E−113


Btg2
−1.147482427
10.53608889
515.3700463
4.3039E−114
 3.514E−112


Rps16
−0.424371382
12.35159808
514.640466
6.2028E−114
 5.039E−112


Ncapg2
0.92687554
9.167047467
512.6513438
1.6802E−113
1.3581E−111


Trip13
0.861097481
9.164683183
504.775635
8.6876E−112
6.9872E−110


Hnrnpa2b1
0.646022506
10.12102555
501.1795627
5.2641E−111
4.2128E−109


Prelid1
0.84830737
9.694516794
499.9674286
9.6618E−111
7.6942E−109


Mis18bp1
0.989123396
9.167160156
499.953746
9.7282E−111
7.7092E−109


Kif23
1.213665525
9.183868072
499.4902839
1.2271E−110
9.6766E−109


Cenpk
0.977765263
9.169824327
499.0265271
 1.548E−110
1.2148E−108


Cd53
−0.807204644
10.54707895
498.8751605
 1.67E−110
1.3042E−108


Rfc3
1.195377368
9.204736752
498.7666346
1.7633E−110
1.3705E−108


Nek2
0.822261208
9.163065177
498.6012871
1.9156E−110
1.4817E−108


Rbm39
−0.637569471
10.67924352
496.9893908
4.2956E−110
3.3068E−108


Rps23
−0.406286702
12.48558878
495.1050408
1.1041E−109
8.4595E−108


Kif4
0.767602407
9.162351714
493.2798993
2.7552E−109
2.1009E−107


Calm3
0.837078543
9.648791113
492.9071306
3.3209E−109
2.5205E−107


Mcm4
1.237704698
9.249504159
492.3921324
4.2985E−109
3.2472E−107


Lrr1
0.734760355
9.161832843
490.4959146
1.1115E−108
8.3574E−107


Tubg1
1.161123937
9.198088185
489.4483765
1.8786E−108
 1.406E−106


Tcp11l2
−1.634422416
9.433736844
488.1472401
3.6054E−108
2.6859E−106


Aurka
1.068308243
9.172368587
484.3164126
2.4576E−107
1.8225E−105


Ppp1ca
0.632645325
10.2987092
481.41766
1.0502E−106
7.7522E−105


Bub3
0.978303874
9.426163753
481.1590552
1.1955E−106
8.7845E−105


Gimap6
−0.955890984
10.46579288
476.4855883
 1.243E−105
9.0926E−104


Srsf3
0.779744858
9.795217966
474.5266694
 3.317E−105
2.4154E−103


Pkm
0.696135927
10.16306624
472.559179
8.8895E−105
6.4443E−103


Dnmt1
1.166056603
9.204828421
470.7607517
2.1889E−104
1.5797E−102


Rpl27
−0.473037067
11.47321822
470.6997649
2.2568E−104
1.6215E−102


Rad54l
0.7727084
9.162948533
470.3781788
2.6514E−104
1.8966E−102


Ckap2
0.975820995
9.166713898
468.4327904
7.0276E−104
5.0048E−102


Cox5a
0.656023439
10.08238974
466.6749309
1.6956E−103
1.2023E−101


Hdgf
0.972628235
9.445842742
464.44492
5.1833E−103
3.6591E−101


Gltp
0.950180258
9.448373052
463.8695222
6.9155E−103
4.8607E−101


Dpy30
1.023120178
9.328389705
461.7599758
1.9902E−102
1.3928E−100


1500009L16Rik
1.477260477
9.247571334
460.2967524
 4.143E−102
2.8869E−100


Fth1
−0.680771391
11.58497142
456.9938832
2.1681E−101
1.5043E−99 


Actg1
0.643649634
12.10129241
456.1278088
3.3462E−101
2.3118E−99 


Mtch1
1.10643288
9.287149805
453.1033746
1.5231E−100
1.04779E−98 


Cbfb
1.032820636
9.370135648
452.9002844
1.6863E−100
1.15512E−98 


Bub1b
0.959966682
9.170515641
452.1480922
2.4583E−100
1.67683E−98 


Diaph3
0.970096611
9.171298634
449.7795334
8.0556E−100
5.47168E−98 


Lsm3
0.997787164
9.359624215
448.7499742
1.3494E−99 
9.1277E−98 


Aunip
0.670434396
9.161326688
437.7231237
3.38833E−97 
2.28232E−95 


Mif
0.805872116
9.844056396
436.030808
7.91233E−97 
5.3075E−95 


Rpl23a
−0.403001699
12.17600595
433.3491727
3.03352E−96 
2.02644E−94 


Lbr
0.95205731
9.432005712
432.6024105
4.4104E−96 
2.93409E−94 


Apitd1
0.909142965
9.168446716
428.856621
2.88234E−95 
1.90967E−93 


Hprt
0.783237884
9.584874345
428.8234294
2.93069E−95 
1.93377E−93 


Gpr132
−1.004205471
9.86576297
428.4891485
3.46518E−95 
2.27716E−93 


Txn1
0.701081293
10.00315511
427.6708888
5.22182E−95 
3.41765E−93 


Dctpp1
1.094803772
9.308632593
425.8304762
1.31339E−94 
8.56142E−93 


Lsm6
0.903925819
9.407177719
421.4776028
1.16367E−93 
7.55498E−92 


Rnaseh2b
1.068717641
9.200404519
421.2669066
1.29327E−93 
8.36282E−92 


Gltscr2
−0.679984369
10.29702999
420.75614
1.67057E−93 
1.07595E−91 


Rabac1
−0.958867451
9.787137327
420.4818867
1.91672E−93 
1.22959E−91 


Fkbp2
1.050724632
9.308168075
420.4200596
1.97704E−93 
1.26327E−91 


Cks2
1.338981401
9.526677109
419.9007985
2.56471E−93 
1.63233E−91 


Rps13
−0.378713374
11.92563194
414.2002714
4.46526E−92 
2.8308E−90 


Ifngr1
−0.847815544
11.1133823
413.3409323
6.86908E−92 
4.33772E−90 


B2m
−0.355443938
12.79997004
412.3439791
1.13216E−91 
7.12156E−90 


Rps9
−0.383350015
11.99561226
412.0841273
1.28964E−91 
8.08074E−90 


Cdca2
0.821439849
9.166105864
411.4821296
1.74384E−91 
1.08845E−89 


Dtl
1.106896693
9.18924485
411.1634528
2.04585E−91 
1.27205E−89 


Atp5f1
0.643350443
9.822922483
409.6484511
4.37169E−91 
2.70777E−89 


Ptpn18
−0.758941589
10.23424984
409.0895315
5.78512E−91 
3.56955E−89 


Cdk4
0.985774613
9.357013312
408.7739438
6.77655E−91 
4.16539E−89 


Sumo2
0.540187794
10.26363646
405.7481332
3.08788E−90 
1.89086E−88 


Tmsb4x
0.414119715
14.2494783
405.2692031
3.92567E−90 
2.39481E−88 


Ndc80
0.962619823
9.175406644
404.1370231
6.92418E−90 
4.20813E−88 


Nme1
0.836072856
9.654201349
402.2147578
1.81473E−89 
1.09876E−87 


Ypel3
−1.161475289
9.689654982
401.7638557
2.27493E−89 
1.37226E−87 


Exosc8
0.957856248
9.341378608
400.5883908
4.10062E−89 
2.46434E−87 


Jund
−1.055752186
11.83099851
400.4895616
4.30887E−89 
2.5799E−87 


Metap2
0.915717569
9.437531426
399.7303403
6.30429E−89 
3.76071E−87 


Akap13
−0.793215709
10.30793282
398.3535435
1.25704E−88 
7.47107E−87 


Sdf2l1
0.994414931
9.406656647
396.5991925
3.02869E−88 
1.79348E−86 


Sapcd2
0.764844708
9.163945742
395.3862743
5.56287E−88 
3.2821E−86 


Lsm4
0.755115667
9.643812444
395.3395144
5.6948E−88 
3.34771E−86 


Gm9843
−0.915259848
10.49271816
392.3295433
2.57476E−87 
1.5081E−85 


Rps21
−0.62326269
10.92456287
390.9949889
5.02652E−87 
2.93353E−85 


Kif15
0.84331882
9.168692803
390.6634871
5.9352E−87 
3.45139E−85 


Ccne1
0.880144523
9.170524832
388.3596153
1.88362E−86 
1.09142E−84 


Cbx5
1.024894498
9.19230852
384.5739452
1.25648E−85 
7.2544E−84 


Rpl28
0.498102261
10.72710227
383.8744651
1.78419E−85 
1.02645E−83 


Hnrnpk
0.53146514
10.15656035
383.3645686
2.30383E−85 
1.3207E−83 


Psmb2
0.681940819
9.694383479
379.5347498
1.57128E−84 
8.97573E−83 


Cmc2
1.041743071
9.281104329
379.2509403
1.81152E−84 
1.03116E−82 


Spag5
0.706452348
9.163496664
374.1589094
2.3264E−83 
1.3196E−81 


Psat1
1.006005575
9.197437084
372.7504146
4.71356E−83 
2.66432E−81 


Poc1a
0.77141726
9.16662515
371.2310014
1.00964E−82 
5.68707E−81 


Nans
0.88765801
9.365818631
368.675622
3.63541E−82 
2.04063E−80 


Snrpb
0.57851806
9.840444383
365.151612
2.12744E−81 
1.19004E−79 


Ppih
0.980938815
9.212614072
363.5653328
4.71252E−81 
2.62699E−79 


Orai1
−1.016728243
9.884536331
362.5648516
7.78216E−81 
4.32325E−79 


Hnrnpa1
0.775375728
9.626739462
362.0919788
9.86428E−81 
5.46116E−79 


H2-Q7
−0.697290381
10.62132196
361.8112175
1.13553E−80 
6.26519E−79 


Rpl9
−0.352804756
11.84254424
361.6211449
1.24907E−80 
6.86818E−79 


Actr3
0.58213293
10.23457831
361.0728975
1.64424E−80 
9.01042E−79 


Paics
1.00190604
9.271004075
360.0098018
2.80188E−80 
1.53024E−78 


Pa2g4
0.925734895
9.357958
359.9198753
2.9311E−80 
1.59543E−78 


Rfc2
1.00323133
9.292032711
359.229939
4.1425E−80 
2.24724E−78 


Atp5a1
0.627339286
9.818566382
358.8898969
4.91255E−80 
2.65606E−78 


Psmd13
0.861321347
9.383420226
358.355887
6.42077E−80 
3.45994E−78 


Rpl27a
−0.355187932
11.74011835
356.7387685
1.4445E−79 
7.75805E−78 


Gpsm2
0.900753226
9.172278225
356.3796708
1.72946E−79 
9.25778E−78 


Dck
0.997033102
9.191785175
356.3011689
1.79889E−79 
9.59766E−78 


Ssr2
0.86771444
9.385650464
355.9665601
2.12749E−79 
1.13135E−77 


Cmtm7
0.934755685
9.513680523
355.7956012
2.3179E−79 
1.22856E−77 


Ssrp1
0.866024797
9.399511454
355.7340231
2.39058E−79 
1.26295E−77 


Atp5j
0.57633364
9.979028433
355.6056347
2.54953E−79 
1.34253E−77 


E2f8
0.654183684
9.162243958
354.7642703
3.88751E−79 
2.04044E−77 


Gnai2
0.652274503
10.17405449
353.6515535
6.79163E−79 
3.55318E−77 


Lilr4b
−1.271690435
9.778014426
353.5422247
7.17432E−79 
3.74129E−77 


Pkmyt1
0.925729349
9.188417389
353.5314431
7.21321E−79 
3.74948E−77 


Slc3a2
−0.909174492
10.08938712
352.8096247
1.03588E−78 
5.36734E−77 


Raly
0.620771468
9.75257472
352.2901969
1.34407E−78 
6.94192E−77 


Plk4
1.012850484
9.204610036
351.2839875
2.22605E−78 
1.14606E−76 


Ywhaq
0.759607883
9.638348777
350.7916279
2.84939E−78 
1.46233E−76 


Nhp2
0.965616532
9.336771458
347.9230005
1.20071E−77 
6.14264E−76 


Prdx4
0.95685906
9.185355071
347.3384828
1.60964E−77 
8.20866E−76 


Ttk
0.594320893
9.161194325
346.9284717
1.97705E−77 
1.00506E−75 


Ubald2
−0.910108518
10.61959322
346.3238081
2.67728E−77 
1.35677E−75 


Cox7a2
0.563324176
9.911912802
346.1469211
2.9256E−77 
1.47798E−75 


Nup62
1.005454222
9.206164865
346.0910614
3.00871E−77 
1.51523E−75 


Cdk2
0.981233292
9.192856049
345.9266664
3.26723E−77 
1.64031E−75 


Haus4
0.985440832
9.208147658
345.7031703
3.6547E−77 
1.82916E−75 


Hells
1.087821722
9.221371755
344.8659781
5.56121E−77 
2.77477E−75 


Rps24
−0.405347353
12.00637056
344.8094632
5.72106E−77 
2.84574E−75 


Tuba1c
1.190293172
9.28147513
343.4777414
1.11556E−76 
5.53193E−75 


Ect2
0.731575748
9.165310866
343.2551281
1.2473E−76 
6.16632E−75 


Chaf1b
0.954765111
9.189533469
343.1341221
1.32533E−76 
6.53209E−75 


Cotl1
0.615218959
10.46246128
341.9240189
2.4314E−76 
1.19471E−74 


Rps26
0.445540671
10.99491833
341.6432091
2.79905E−76 
1.3712E−74 


Capzb
0.553581167
10.15938328
340.7800705
4.31505E−76 
2.10746E−74 


Mrpl42
0.937339318
9.309229813
340.6852723
4.52513E−76 
2.20341E−74 


Il2rg
−0.835336928
10.13208397
338.9763865
1.0661E−75 
5.17553E−74 


4930579G24Rik
0.94917606
9.180623293
338.8571651
1.13178E−75 
5.47794E−74 


Junb
−0.943261022
11.88898263
336.5520948
3.59562E−75 
1.73513E−73 


Ncaph2
0.911927157
9.286995177
336.4469465
3.79031E−75 
1.82363E−73 


Emp3
0.793797327
9.865128415
334.8325828
8.51662E−75 
4.08545E−73 


Tnfaip3
−0.949263973
10.12331381
334.7605728
8.82979E−75 
4.22315E−73 


Gimap3
−0.902235267
9.895535563
334.5883792
9.62615E−75 
4.59045E−73 


Pgam1
0.94467201
9.352897068
334.0316833
1.27262E−74 
6.05091E−73 


Cenpp
0.638773234
9.162492986
333.9931832
1.29743E−74 
6.15078E−73 


Vim
0.855008339
10.47562831
333.5659031
1.60746E−74 
7.59832E−73 


Vdac1
0.887345388
9.320038733
332.2835275
3.058E−74
1.44127E−72 


Psma4
0.770905394
9.544071463
331.5369072
4.44682E−74 
2.08975E−72 


Cdkn2a
1.028553278
9.187324767
331.0716756
5.61534E−74 
2.63123E−72 


Ncaph
0.74820308
9.167317127
328.5739561
1.9651E−73 
9.18143E−72 


Traf1
−0.842403186
10.10488831
328.4463672
2.09495E−73 
9.75992E−72 


Neurl3
−1.151353941
9.619302411
327.1367677
4.04028E−73 
1.87687E−71 


Vdac3
0.834505977
9.365333685
325.806207
7.87442E−73 
3.6475E−71 


Impdh2
0.851176704
9.378159405
325.6656739
8.44944E−73 
3.90268E−71 


Saraf
−0.801725651
10.21652778
324.5600821
1.47109E−72 
6.77538E−71 


Smc1a
0.940917599
9.298422522
323.9352535
2.01249E−72 
9.24259E−71 


Fdps
1.173461658
9.32579499
323.4946271
2.5102E−72 
1.14957E−70 


Foxm1
0.630168945
9.162231863
323.3252654
2.73274E−72 
1.24795E−70 


Rpl18
−0.347893772
11.80722476
320.9543542
8.97477E−72 
4.07545E−70 


Pold2
0.971125766
9.227590909
320.9547906
8.9728E−72 
4.07545E−70 


Ubc
−0.807279913
11.04900464
319.2561808
2.1034E−71 
9.52481E−70 


1700097N02Rik
1.145940071
9.227500037
317.3504743
5.47057E−71 
2.47031E−69 


Rnf26
0.918800269
9.202614329
315.8383443
1.16793E−70 
5.25928E−69 


Brip1
0.682303488
9.163572773
315.4570916
1.41406E−70 
6.3499E−69 


Cd3g
−0.510882198
11.10863423
313.5489424
3.68235E−70 
1.649E−68


Anxa2
0.921408878
9.843831779
313.1314335
4.54019E−70 
2.02753E−68 


Got1
−1.503058838
9.856934685
312.1931746
7.26878E−70 
3.23711E−68 


Il7r
−1.159630154
9.752616304
312.1595397
7.39245E−70 
3.27415E−68 


Syce2
0.973513782
9.186518067
312.1627233
7.38066E−70 
3.27415E−68 


Ccr2
−1.363324439
9.897377867
310.7556679
1.49489E−69 
6.60282E−68 


Tubb4b
0.985482027
9.441615817
310.1736737
2.00166E−69 
8.81714E−68 


Bard1
0.7156241
9.16703328
309.8750016
2.32517E−69 
1.02143E−67 


Rps28
−0.497840868
11.70804915
309.4766684
2.83942E−69 
1.24396E−67 


Zfp367
0.842713939
9.17481005
309.4573584
2.86705E−69 
1.25267E−67 


H2-Q4
−0.898731428
9.753196254
307.5382342
7.50776E−69 
3.27144E−67 


E2f7
0.613202567
9.162536468
307.1197385
9.26146E−69 
4.02475E−67 


Hjurp
0.991807601
9.227531733
306.0744122
1.56461E−68 
6.78108E−67 


Hat1
0.94341255
9.268309904
306.0270499
1.60222E−68 
6.92554E−67 


Ndufc2
0.713850984
9.498050133
305.8636729
1.73906E−68 
7.49698E−67 


Tpt1
−0.370821499
11.78414713
303.762904
4.98859E−68 
2.14483E−66 
















TABLE 3J







LPL-9 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Vps37b
−3.362309366
10.60466024
553.5415461
 2.1358E−122
 3.4528E−118


Ubald2
−3.004928151
10.62016629
523.2616369
 8.2591E−116
 6.6758E−112


Junb
−2.255821875
11.89138657
469.9759664
 3.2434E−104
 1.7478E−100


H3f3b
−1.178871544
12.34439093
430.2412867
1.44003E−95
5.81989E−92


Ifngr1
−1.844725191
11.11290817
395.5179928
5.20745E−88
1.68367E−84


Bhlhe40
−2.046123117
10.72362795
388.2228925
2.01724E−86
5.43512E−83


AW112010
1.174769842
11.38326993
356.4332675
1.68361E−79
3.88817E−76


Cd52
0.932440577
11.79358549
322.7676071
3.61464E−72
7.30427E−69


Tnfrsf4
−2.757825477
10.62218143
315.7136553
1.24331E−70
2.23326E−67


Eif1
−0.893416996
11.85895519
311.8836544
 8.4896E−70
1.37243E−66


Odc1
−2.920870292
10.45345646
304.1215933
4.16711E−68
6.12414E−65


Btg1
−1.28118989
12.25019835
303.6088436
5.38941E−68
7.26043E−65


Tmsb4x
0.581187345
14.2491853
302.157629
 1.1161E−67
1.38791E−64


Gramd3
−2.802981311
10.20645101
301.2956029
1.71991E−67
 1.986E−64


Hspa5
−1.550719809
10.97847279
281.551035
3.44828E−63
3.71632E−60


Ctla4
−2.513468645
10.15301427
272.2227397
3.71946E−61
3.75805E−58


Jund
−1.558244203
11.83437558
255.6988809
1.48623E−57
1.41332E−54


Dusp5
−2.250898553
9.994499887
254.2297622
3.10702E−57
2.79045E−54


Pnrc1
−1.500131777
10.57796425
251.0077589
1.56582E−56
1.33226E−53


Ifrd1
−2.375646739
10.02595917
249.5366907
3.27677E−56
2.64861E−53


Prr7
−2.75505733
9.824432052
249.3588408
3.58277E−56
2.75805E−53


Nfkbia
−1.99916409
10.83378406
242.998769
8.72683E−55
6.41263E−52


Pim1
−1.845131276
10.82605822
235.7608354
 3.3042E−53
2.32242E−50


Tnfaip3
−1.895396718
10.1251933
218.6736324
1.76077E−49
1.18602E−46


Bcl2a1b
−1.652180963
10.39213885
216.7889935
4.53742E−49
2.93408E−46


Tgif1
−2.501012681
9.720337198
214.475046
1.45073E−48
9.02017E−46


Icos
−1.845684668
10.25638736
210.0099268
1.36678E−47
 8.1835E−45


Orai1
−2.063220862
9.884609199
204.7883085
1.88354E−46
1.08748E−43


Il21r
−1.962235376
10.19623449
203.4843995
3.62652E−46
 2.0216E−43


Crem
−2.638056333
10.0668258
197.6552503
6.78459E−45
3.65599E−42


Cd160
2.206995649
9.33477913
182.0716813
1.71042E−41
8.91955E−39


Cytip
−1.413213899
10.18835805
178.9512357
 8.2113E−41
4.14824E−38


Btg2
−1.410335764
10.53805397
177.5543337
 1.6574E−40
8.11927E−38


Rgs2
−2.460498875
10.05981908
172.6649968
 1.937E−39
9.20988E−37


Gna13
−1.697172725
9.985101538
171.227445
3.99104E−39
 1.8434E−36


Ramp3
−3.194515909
9.93665422
169.8774295
7.86932E−39
3.53376E−36


Gpr132
−1.680424877
9.866138363
162.2711639
 3.6095E−37
1.57706E−34


Rsrp1
0.967312622
10.002844
155.2107284
1.25934E−35
 5.3575E−33


Hspa8
−0.8840235
12.33059378
150.107401
1.64242E−34
6.80805E−32


Kdm6b
−2.430981026
9.740743634
147.7492684
5.38196E−34
2.17512E−31


Dnaja1
−1.426863641
10.76378984
144.5283367
 2.7232E−33
1.07374E−30


Tbc1d10c
1.212453764
9.522701275
142.6216867
7.11128E−33
2.73717E−30


Traf1
−1.340039639
10.10523686
141.5244384
1.23557E−32
4.64516E−30


Got1
−2.192776394
9.85564432
140.3055035
2.28248E−32
8.38605E−30


Serpinb9
−2.267244697
9.858124549
138.1940714
6.60916E−32
 2.3743E−29


Tnfsf8
−2.583712667
10.01779871
137.396967
9.87356E−32
3.46991E−29


Arf4
−1.368873021
9.97476194
135.071322
3.18519E−31
1.09557E−28


Dgat1
−2.031965751
9.778611253
134.2108859
4.91298E−31
1.65465E−28


Fosl2
−2.219055063
9.531543255
133.6905648
6.38502E−31
2.10654E−28


Sub1
−0.8321836
11.1487442
132.4885171
1.16981E−30
3.78224E−28


Lmnb1
−1.713264533
9.781458041
132.1686548
1.37433E−30
4.35636E−28


Nr4a1
−2.090701396
9.630029378
131.7109619
1.73069E−30
5.38046E−28


Pde4b
−1.764328126
9.658595001
130.8028443
2.73461E−30
8.34108E−28


Srgn
−0.731632739
11.37077253
128.7034672
7.87464E−30
2.35744E−27


Rora
−1.510772327
9.982441992
126.5708186
2.30623E−29
6.77865E−27


Nr4a2
−2.221776331
9.521329297
124.4447829
6.73268E−29
1.94358E−26


Zc3h12a
−1.897723673
9.536850747
123.5261202
1.06969E−28
3.03379E−26


Ctsw
0.930564149
9.943520924
123.4280412
1.12389E−28
3.13256E−26


Cd48
1.086641614
9.721154005
122.8259103
1.52237E−28
 4.1713E−26


Itm2b
0.58610183
10.97660085
122.7037866
1.61902E−28
4.36218E−26


Cd28
−1.127738832
10.3795945
122.4420043
1.84737E−28
4.89584E−26


Nfkbiz
−1.840698584
9.633469169
122.3528469
1.93228E−28
5.03827E−26


Samsn1
−1.744732813
9.795351469
121.9802503
2.33147E−28
5.98263E−26


Itgae
1.72002363
9.275517599
121.8280393
2.51738E−28
6.35875E−26


Rnf125
−1.773543349
9.561296235
121.7912041
2.56456E−28
6.37825E−26


Hif1a
−1.505670523
9.774250056
119.7969403
7.00793E−28
1.71652E−25


Slc3a2
−1.234943945
10.08971534
118.3977452
1.41883E−27
3.42341E−25


Cd7
1.838925955
9.494193586
117.2006182
2.59451E−27
6.16805E−25


Hilpda
−1.952428815
9.667484361
116.4590431
3.77087E−27
8.83476E−25


Gpr183
−1.695171481
9.68048749
114.4391392
1.04422E−26
2.41156E−24


Hsp90aa1
−1.439535496
10.76840824
113.1243036
2.02663E−26
4.61443E−24


Ubb
−0.634972292
12.9047583
113.0579016
2.09565E−26
4.70531E−24


Ptp4a1
−1.480320602
9.696547191
111.6659421
4.22885E−26
9.36488E−24


Sash3
1.316630069
9.280817169
109.2523432
1.42887E−25
3.12149E−23


Coro1a
0.627749664
10.77296532
106.2309167
6.56248E−25
1.41452E−22


Actb
0.907502265
13.40512845
105.5259815
9.36618E−25
1.99228E−22


Ddx5
−0.644534498
11.19926646
104.0441527
1.97857E−24
4.15398E−22


Cdkn1a
−1.967048903
9.693214366
103.6652262
2.39559E−24
4.96502E−22


Cnn2
0.823207984
9.902895339
100.8167278
1.00901E−23
2.06476E−21


Lmna
−2.182044064
9.713552635
99.72532929
1.75068E−23
3.53768E−21


Arhgap31
−1.622267935
9.6544108
96.82563034
7.57097E−23
1.51102E−20


Xist
−2.484105042
9.888219824
96.72908307
 7.9493E−23
1.56717E−20


Hspe1
−1.341804559
10.27526821
96.08881383
1.09844E−22
2.13944E−20


Abi3
1.306134092
9.334710046
95.69364832
 1.3411E−22
2.58098E−20


Rrad
−1.921524767
9.540636021
95.48107352
1.49312E−22
2.83974E−20


H2afz
−0.974226952
10.76535167
93.52885095
4.00322E−22
7.52513E−20


P2ry10
−1.511318756
9.588153587
92.98229741
5.27642E−22
9.80443E−20


Mxd1
−1.609829978
9.600690864
92.34661385
7.27504E−22
1.33646E−19


Bcl2a1d
−1.24869947
9.947927963
91.96777364
8.80995E−22
1.60024E−19


Prdx6
−0.967912422
10.1972206
91.5415933
1.09271E−21
1.96275E−19


Lilr4b
−1.440483077
9.778164612
91.48947472
1.12187E−21
1.99299E−19


Fam110a
−1.679558179
9.494286279
90.86306193
1.53967E−21
2.70547E−19


Hsp90ab1
−0.858760511
11.19689045
90.06409284
2.30568E−21
4.00792E−19


Coq10b
−1.53671868
9.509959599
88.75880416
4.46008E−21
7.67039E−19


Cd38
1.313844577
9.272488233
88.58034841
4.88114E−21
8.30616E−19


Neurl3
−1.473553701
9.619697122
88.3936069
5.36439E−21
9.03341E−19


Fth1
−0.567457067
11.58469958
86.84849168
1.17161E−20
1.95261E−18


Akap13
−0.848619293
10.30887901
86.79463258
1.20396E−20
1.98604E−18


Il4ra
−1.582100662
9.499604335
86.17634412
1.64585E−20
2.68755E−18


Satb1
−1.408753663
9.757012703
85.69752921
2.09675E−20
 3.3896E−18


Dusp1
−1.530840947
9.939629974
85.67286338
2.12307E−20
3.39817E−18


Srsf5
−0.903198748
10.09111839
85.09898727
2.83796E−20
4.49789E−18


Cd3g
0.471720583
11.10947799
84.99935977
2.98462E−20
 4.6844E−18


Ubc
−0.779495031
11.05009877
84.31851779
4.21152E−20
6.54648E−18


Rac2
0.462122743
11.09605968
84.20990673
4.44936E−20
6.85031E−18


Sh2d3c
1.218788569
9.19941797
83.84734452
5.34493E−20
8.15153E−18


Ppp1cc
−0.923264626
10.14021217
83.69132112
5.78386E−20
8.73849E−18


Ppp1r15a
−1.499647208
9.595479955
82.25975518
1.19327E−19
1.77601E−17


Emb
−1.047852737
10.25090288
82.25279597
1.19748E−19
1.77601E−17


Socs3
−1.700674574
9.492344664
81.83481982
1.47949E−19
2.17431E−17


Tnfrsf18
−1.027239187
10.0676873
81.19430596
2.04581E−19
 2.9795E−17


Itk
−1.164677422
9.814304773
81.05650718
2.19355E−19
3.16615E−17


Gch1
−1.625035979
9.459439724
80.85130967
2.43357E−19
3.48151E−17


Rgcc
−2.013100019
9.563703364
80.57143357
2.80384E−19
3.97604E−17


Sp100
0.923940711
9.553726962
80.47733171
2.94059E−19
 4.1337E−17


Herpud1
−1.409570605
9.555337805
80.10733411
3.54614E−19
4.94197E−17


1810041H14Rik
1.354825414
9.21120969
79.71596422
4.32294E−19
5.97304E−17


Susd3
1.085969427
9.369960996
79.55560648
4.68843E−19
6.42314E−17


Rinl
0.974544852
9.448193104
79.53459661
4.73855E−19
6.43726E−17


Ube2s
−0.993765017
10.00293497
78.4765122
8.09551E−19
 1.0906E−16


Dusp10
−1.717465499
9.475523882
78.16195183
9.49295E−19
1.26829E−16


Cd3e
0.58619296
10.374978
77.43783083
1.36966E−18
1.81492E−16


Furin
−1.321937592
10.38150283
77.13934464
1.59312E−18
2.07696E−16


Gadd45b
−1.537760322
9.727376493
77.14809203
1.58608E−18
2.07696E−16


Rnf157
−1.556704338
9.351515537
75.91210474
2.96576E−18
3.83556E−16


Rel
−1.541336876
9.441996052
75.09801289
4.47917E−18
5.74684E−16


Fosb
−1.833251464
9.410902867
74.90950785
4.92791E−18
 6.2728E−16


Nfkb2
−1.351023559
9.521792478
74.24075671
6.91478E−18
8.73316E−16


Mbnl1
0.718281043
9.849977707
73.3013403
1.11292E−17
1.39469E−15


Csrnp1
−1.52260673
9.467509493
72.98524101
1.30623E−17
1.62435E−15


Kdm2b
−1.451262627
9.446694828
72.83509919
1.40948E−17
1.73936E−15


Vgll4
−1.268334583
9.732088334
72.19282088
1.95164E−17
2.39017E−15


Sqstm1
−1.19547316
9.660274476
72.16222124
1.98214E−17
2.40927E−15


Ptpn7
1.086828727
9.307714169
70.44758814
4.72659E−17
5.70224E−15


Ptprcap
0.6964048
10.04011854
70.09358467
5.65566E−17
6.77255E−15


Fasl
−1.316167045
9.594289128
69.62504673
7.17204E−17
8.52523E−15


Gzma
1.647822529
10.7255561
69.16497394
9.05622E−17
1.06863E−14


Dnajb6
−0.842670368
10.02350611
69.03232018
 9.6863E−17
 1.1347E−14


Ctsd
0.815625996
9.641722886
68.78729408
1.09677E−16
1.27557E−14


Twf2
0.959303046
9.389086426
68.65428397
 1.1733E−16
1.35482E−14


Dnajb1
−1.76825082
10.3180278
68.14703578
1.51747E−16
1.73982E−14


Arhgdib
0.495735889
10.73174892
67.9987325
1.63601E−16
1.86251E−14


D16Ertd472e
−1.176485153
9.623998584
67.7530717
1.85308E−16
2.09489E−14


Maff
−1.470538345
9.30528636
67.54649177
2.05777E−16
2.31013E−14


Arid5a
−1.145208968
9.656952379
67.29570725
 2.3369E−16
 2.6054E−14


Bcl11b
0.918496067
9.518633779
67.04751294
2.65042E−16
 2.9347E−14


Lcp1
0.582999991
10.29118475
66.78424301
 3.0291E−16
3.33118E−14


Gm12840
−1.432116469
10.16273225
65.97236177
4.57291E−16
4.99497E−14


Ifnar1
−1.245408007
9.536369908
65.79959531
4.99185E−16
5.41599E−14


Ccr9
1.552636581
9.278717469
65.07952837
7.19355E−16
7.75273E−14


Rbm39
−0.54358267
10.68058111
64.55664829
9.37965E−16
1.00418E−13


Cfl1
0.413893348
11.1128037
64.18560915
1.13233E−15
1.20429E−13


Cd226
1.090319319
9.268603322
63.99459494
1.24761E−15
1.31823E−13


Nmrk1
−1.462700729
9.470715907
63.44007075
1.65321E−15
1.73544E−13


Ptp4a2
−0.807378816
9.957611547
61.91530565
3.58552E−15
3.73958E−13


Ppp1r18
0.785511357
9.553224076
60.76888267
6.41845E−15
6.65132E−13


Clk1
−0.958741139
9.766510063
60.56036792
7.13563E−15
7.34742E−13


Peli1
1.000856627
9.756264686
60.39582424
7.75774E−15
7.93744E−13


Ndfip1
−1.004103122
9.657936964
59.4305111
 1.2669E−14
1.28809E−12


Atp5l
0.440049168
10.47763691
59.3617818
1.31192E−14
1.32553E−12


Tsc22d4
0.825276707
9.491104749
59.08944213
1.50665E−14
1.51283E−12


H2-Q7
−0.595713074
10.6209645
59.05974548
1.52957E−14
1.52636E−12


Hmgb2
−0.75986792
10.71114671
58.85699736
1.69558E−14
1.68164E−12


Tgif2
−1.215191779
9.272991879
58.66690328
1.86757E−14
1.84092E−12


Ms4a4b
0.546195203
10.75186324
58.63792834
1.89527E−14
1.85691E−12


Dennd4a
−1.326848682
9.353141394
57.78339494
 2.9263E−14
2.84979E−12


4930523C07Rik
−0.909932353
9.830309453
57.35236731
3.64325E−14
3.52675E−12


Med10
0.841244026
9.430585613
57.27171139
3.79576E−14
3.65251E−12


Nfkbie
−1.310554368
9.398336132
56.89961293
4.58636E−14
4.36616E−12


Gimap4
0.496815742
10.52507831
56.89744873
4.59141E−14
4.36616E−12


Ier2
−0.975482231
9.828762331
56.8735566
4.64753E−14
4.39369E−12


Relb
−1.186985542
9.473479165
56.23204924
6.44031E−14
6.05315E−12


Nkg7
0.586133805
11.21029847
56.16392406
6.66737E−14
6.23033E−12


Gabpb1
−1.283624775
9.477984036
55.60889581
8.84226E−14
8.21517E−12


Ninj1
−1.261893918
9.366255933
54.08307596
 1.9219E−13
1.77539E−11


Tpt1
−0.325215434
11.78327961
53.9762298
 2.0293E−13
1.86396E−11


Actn2
0.965714565
9.563403652
53.92498431
2.08292E−13
 1.9024E−11


Lsp1
0.535349746
10.32145964
53.76099128
2.26424E−13
2.05639E−11


Rnf166
0.864754523
9.39636208
53.53747986
2.53706E−13
2.29129E−11


Tnfrsf1b
−1.199287429
9.452787431
53.05790689
3.23859E−13
2.90861E−11


Ptma
−0.475826165
11.28813239
52.50547005
4.29052E−13
3.83207E−11


Lck
0.468090608
10.31669256
51.95127581
5.68951E−13
5.02604E−11


Calm2
−0.601880603
10.41348638
51.95191835
5.68765E−13
5.02604E−11


3830406C13Rik
0.90926778
9.301772413
51.17445011
8.45115E−13
7.42507E−11


Asb2
0.928426346
9.480791591
50.85879632
9.92555E−13
8.67332E−11


Hmha1
0.652669475
9.750300427
50.06435076
1.48786E−12
1.29316E−10


Hspd1
−1.069494786
9.781010215
49.88364348
1.63139E−12
1.41032E−10


Areg
−1.923385968
9.386120367
49.80905363
 1.6946E−12
1.45718E−10


Apol9b
0.886455736
9.167676629
49.50417242
 1.9795E−12
1.69316E−10


Psmb8
0.434299989
10.43462791
49.35929888
2.13122E−12
1.81333E−10


Dok1
0.955105997
9.246169552
48.3539275
3.55831E−12
3.01171E−10


Tnfsf11
−1.406891552
9.546989381
48.2925552
3.67143E−12
3.09127E−10


Traf4
−1.236074371
9.35979803
48.17646755
3.89535E−12
3.26281E−10


Lilrb4a
−1.08433259
9.64690885
47.98172583
 4.3021E−12
3.58494E−10


Ogt
0.704006931
9.590260945
47.88727385
4.51442E−12
3.74257E−10


Cks2
−1.25825363
9.525654391
47.68150363
 5.014E−12
4.13553E−10


Sh3bgrl3
0.360547616
11.2447853
47.53739765
5.39646E−12
4.40602E−10


Abracl
0.55270054
9.935287369
47.53825866
5.39409E−12
4.40602E−10


Tnfrsf9
−1.42773064
9.401976428
47.34661806
5.94807E−12
4.83198E−10


Gm8369
−0.832266542
9.924762802
47.22681655
6.32294E−12
5.11084E−10


Pelo
0.94676423
9.234996852
47.03540285
 6.9716E−12
5.60711E−10


Cnbp
−0.563596949
10.25781838
46.92285364
7.38367E−12
5.90913E−10


Il2rg
−0.677940365
10.13360006
46.75705615
8.03551E−12
6.39912E−10


Ccl5
0.919582539
13.31121661
46.4956193
9.18235E−12
7.27656E−10


Tob1
−1.175037157
9.420105584
46.44658961
9.41501E−12
7.42454E−10


Nrip1
−1.112584475
9.582654591
46.21144382
1.06155E−11
 8.3306E−10


Wdr1
0.693500318
9.566573023
45.91086687
1.23758E−11
9.66505E−10


Arhgap30
0.83146301
9.369684229
45.82771058
1.29124E−11
1.00357E−09


Ctsa
0.775835324
9.447143126
45.51061925
1.51814E−11
1.17427E−09


Cd2
−0.606370172
10.31972667
45.00764771
1.96266E−11
1.51088E−09


Sh2d2a
−0.818274264
9.846355515
44.79805531
 2.1844E−11
 1.6736E−09


Cdc42
0.401636828
10.40470796
44.76997118
2.21595E−11
1.68977E−09


Pfn1
0.349264905
12.14557694
44.61396337
2.39974E−11
1.82132E−09


Batf
−0.991153728
9.653675216
44.57301579
2.45046E−11
1.85113E−09


Ptpn22
−0.694250299
10.09364713
44.48055916
2.56896E−11
1.93162E−09


Nhp2l1
−0.775628966
9.714941638
44.38193943
2.70168E−11
2.02201E−09


Uhrf2
−1.094311266
9.55449696
44.32834676
2.77666E−11
2.06855E−09


Ets1
−0.570424212
10.24999257
44.24122854
2.90302E−11
2.15276E−09


Snx18
−1.132431204
9.331532268
43.86391069
 3.5202E−11
2.59852E−09


Mfsd6
−1.152082823
9.369452083
43.78578375
3.66357E−11
2.69205E−09


H2-D1
−0.274687932
12.28188438
43.52350373
4.18898E−11
3.06421E−09


Kpna1
−1.137981458
9.374079051
43.41627872
4.42492E−11
3.22222E−09


Marcksl1
−1.285775771
9.352433315
43.24937144
4.81892E−11
 3.4934E−09


Thy1
0.455287107
10.28931692
43.22676676
4.87492E−11
3.51821E−09


Adam19
0.923901938
9.250780528
43.19470424
4.95546E−11
3.56044E−09


Socs1
−1.195444572
9.398296399
43.16486195
5.03162E−11
3.59917E−09


Lin54
−1.157900026
9.319410902
43.10713832
5.18228E−11
3.69061E−09


Cd3d
0.395146119
10.55258599
42.83010569
5.97062E−11
4.23338E−09


Dbnl
0.782581322
9.387216148
42.72872524
6.28821E−11
4.43909E−09


Hsph1
−1.264161017
9.472504163
42.69129717
6.40968E−11
4.50517E−09


Gm26917
0.710657091
9.523381771
42.21037434
8.19641E−11
5.73606E−09


Fam78a
0.879213037
9.208952851
42.13614851
8.51348E−11
5.93228E−09


Dtx1
1.008504624
9.250253022
41.95903475
9.32057E−11
 6.4668E−09


Mxi1
−1.116673492
9.308242179
41.93517845
9.43498E−11
 6.5182E−09


Nfkbid
−1.315772495
9.347313622
41.7580944
1.03294E−10
7.10573E−09


Klrc1
−1.210105703
9.658447581
41.54879294
1.14965E−10
 7.8419E−09


Epsti1
0.569607008
9.946045371
41.54967136
1.14914E−10
 7.8419E−09


Dnajb9
−1.084099427
9.393349046
41.13548499
1.42034E−10
9.64758E−09


Il2rb
−0.831902894
9.64634325
41.07264289
1.46675E−10
9.92112E−09


Mob3a
0.890516107
9.226348924
40.98635141
1.53296E−10
1.03258E−08


H2-K1
−0.346494479
11.60996193
40.85004492
1.64369E−10
1.10257E−08


Ifi47
0.925508886
9.281723133
40.83337968
1.65777E−10
1.10742E−08


Nr4a3
−1.021483749
9.253608924
40.74894056
1.73097E−10
1.15156E−08


Wdr89
−0.670857344
10.42583197
40.62234323
1.84683E−10
 1.2236E−08


Cirbp
−0.732767081
9.8218496
40.59128835
1.87641E−10
1.23813E−08


Gm8797
−1.072905955
9.417561025
40.31410487
2.16242E−10
1.42104E−08


Ier5
−0.886024309
9.710443697
40.1094026
 2.4013E−10
 1.5558E−08


Slc38a2
−1.010291571
9.471424004
40.10955303
2.40112E−10
 1.5558E−08


Slc25a3
−0.627950281
9.94947131
40.12853795
 2.3779E−10
 1.5558E−08


Frmd8
0.859836984
9.275205329
40.1056034
2.40598E−10
 1.5558E−08


Eif5
−0.72406162
9.823473225
40.07275715
2.44678E−10
1.57588E−08


Apol9a
0.608753389
9.161172914
39.95832528
2.59439E−10
1.66432E−08


Adora2a
−1.033716215
9.426688183
39.33091525
3.57732E−10
2.28581E−08


Cxcl10
−1.475883536
9.358322387
39.21145346
3.80303E−10
2.42046E−08


Arhgef1
0.598116191
9.623554673
39.19793239
3.82946E−10
2.42772E−08


Gpx4
−0.613696802
10.07608511
38.75438539
4.80629E−10
 3.0351E−08


Ncl
−0.572951664
10.07277318
38.52684203
5.40058E−10
3.39711E−08


Lamtor4
0.793961983
9.330433333
38.50931949
5.44928E−10
3.41446E−08


Fus
−0.642585145
9.89936241
38.25000659
6.22369E−10
3.88464E−08


Plscr1
−1.051442773
9.521572279
38.16059915
6.51549E−10
4.05113E−08


Tob2
−1.094490521
9.437073308
38.07654006
6.80231E−10
4.21326E−08


Zeb1
−1.072949092
9.369008588
37.96671919
7.19617E−10
 4.4402E−08


Vcpkmt
−0.961449373
9.468530603
37.90218253
 7.4382E−10
4.57209E−08
















TABLE 3K







LPL-10 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Rps19
1.281201651
12.57926737
1233.273109
 3.5827E−270
 5.7917E−266


Rpl13
0.956829763
12.63772111
932.1398479
 1.0119E−204
 8.1792E−201


Rps18
0.920425672
12.47331244
739.6396686
 7.1801E−163
 3.8691E−159


Rpl32
0.868196367
12.44732277
680.1448306
 6.2148E−150
 2.5117E−146


Rps5
0.864582146
12.08884438
644.630062
 3.2883E−142
 1.0632E−138


Rps6
0.816445317
12.20836226
632.6674576
 1.3142E−139
  3.541E−136


Rps7
0.842852102
11.94308668
536.7798374
 9.4618E−119
 2.1851E−115


Rpl18a
0.690080812
12.84274248
470.7611511
 2.1885E−104
 4.4223E−101


Rpl14
0.747724362
11.87702392
412.2337163
1.19648E−91
2.14915E−88


Rplp0
0.729699393
12.38772174
401.1684565
3.06604E−89
4.95655E−86


Rps24
0.773043225
12.00582011
392.5932715
2.25592E−87
3.31538E−84


Rps29
0.813133225
12.24466527
380.4817947
9.77388E−85
 1.3167E−81


Rpl23a
0.692286262
12.17553899
378.2544662
2.98534E−84
3.71238E−81


Rps4x
0.707695218
11.84790603
373.5198856
3.20491E−83
3.70075E−80


Rpl17
0.660157187
12.2966186
372.0304773
6.76238E−83
7.28804E−80


Rpl36a
0.941421878
11.04525672
352.1534326
1.43947E−78
1.45441E−75


Rps23
0.623074475
12.4852828
341.6130126
2.84176E−76
2.70235E−73


Rps27
0.711451235
13.23490481
297.9212211
 9.347E−67
8.39465E−64


Rpl8
0.670651545
11.65215182
292.7571918
1.24681E−65
1.06083E−62


Rplp1
0.718154214
11.70321268
282.5577797
2.08075E−63
1.68187E−60


Rpl12
0.895952737
10.99231792
280.8502016
4.90144E−63
3.77317E−60


Rps14
0.541088503
12.65498313
275.4661899
 7.305E−62
5.36785E−59


Rps16
0.581596764
12.35137902
275.2382377
8.19027E−62
5.75669E−59


Rpl35
0.847849209
11.18855297
272.1039925
3.94784E−61
 2.6592E−58


Rps28
0.805119029
11.70739869
270.4060205
9.25591E−61
5.98524E−58


Rpl21
0.642166954
11.76870634
267.6073941
 3.7703E−60
2.34426E−57


Rps15a
0.579920698
12.40379231
264.5275077
1.76872E−59
1.05901E−56


Rpl39
0.66324467
11.77723605
263.6273811
2.77878E−59
1.60435E−56


Rps20
0.841150732
11.06847766
256.9273917
8.02207E−58
4.47189E−55


Rpl9
0.584342695
11.84222479
253.9094837
3.64891E−57
1.96627E−54


Rpl3
0.564967956
12.09251912
252.5140514
7.35131E−57
3.83359E−54


Ly6c1
1.974532568
9.165759038
248.5554636
5.36247E−56
2.70906E−53


Rps3
0.53410579
11.96702894
245.5972451
2.36763E−55
1.15985E−52


Rpl4
0.586800423
11.68895541
240.4754949
3.09761E−54
1.47282E−51


Ccr7
3.247817647
9.273084775
237.8112414
1.18022E−53
5.45125E−51


Rps9
0.555129117
11.99535989
227.9727216
1.64993E−51
7.40912E−49


Rpl26
0.591538476
11.57420337
217.9166055
2.57534E−49
1.12522E−46


Rps27a
0.556559308
11.8096941
212.0951987
4.79472E−48
2.03978E−45


Tmsb4x
−0.655091827
14.24919003
211.3022905
 7.1408E−48
2.95995E−45


Rpl36
0.577559407
11.87411097
210.065659
1.32905E−47
5.37135E−45


Rplp2
0.596131806
11.91002396
208.3252794
3.18603E−47
1.25623E−44


S100a11
−1.433669212
10.60258364
205.4071252
1.38023E−46
5.31259E−44


Rpl6
0.529407428
11.76076159
198.9458691
3.54707E−45
1.33353E−42


Rpl18
0.538143421
11.80687322
196.9817355
 9.5172E−45
3.49671E−42


Rps2
0.652273398
11.63559296
194.8719464
2.74764E−44
9.87073E−42


Rpl10a
0.66732504
11.14212246
193.7961454
4.71798E−44
1.65806E−41


Rpl35a
0.546906986
11.7233953
192.9272701
7.30123E−44
2.51131E−41


Rps8
0.598624386
11.59252824
191.8021972
1.28517E−43
4.32834E−41


Rps13
0.504165936
11.92517909
186.704
1.66651E−42
5.49814E−40


Rpl29
0.634590575
11.21422123
182.0989711
1.68711E−41
5.45477E−39


Itm2b
−1.023345124
10.97660039
180.2597916
4.25302E−41
1.34812E−38


Furin
−2.579368689
10.38147822
173.642262
1.18497E−39
 3.6839E−37


Rpl23
0.549575844
11.7085398
172.2636291
2.37021E−39
7.22957E−37


Igfbp4
1.65428633
9.162779494
171.5038314
3.47315E−39
1.03976E−36


Rpl37
0.48788775
12.07299733
169.5722666
9.17463E−39
2.69667E−36


Rps12
0.770181053
10.7705244
169.292508
1.05607E−38
3.04864E−36


Bcl2
1.810831323
9.436811299
163.9128841
1.58049E−37
 4.4825E−35


Rpl37a
0.48494208
12.61560851
162.7899384
2.78043E−37
7.74973E−35


Rpl11
0.478674092
11.70900459
162.7464873
2.84187E−37
7.78673E−35


Rps15
0.534372575
11.49069149
155.5644172
1.05403E−35
2.83991E−33


Myl12a
−0.974884236
10.67826813
148.713865
3.31197E−34
8.77726E−32


Rpl19
0.420544487
12.11744557
144.6242094
2.59489E−33
6.76596E−31


Rpl27a
0.46078461
11.73981721
144.0432932
3.47637E−33
8.92046E−31


Cxcr6
−1.698970736
10.38992851
137.7218948
8.38322E−32
2.11755E−29


Rps26
0.623715151
10.99395953
136.8502614
 1.3003E−31
3.23394E−29


Rps3a1
0.456678197
11.6738534
132.4041137
1.22062E−30
2.98978E−28


S100a10
−0.999677972
10.93991354
132.1604121
1.38005E−30
3.32983E−28


Rpl24
0.455232205
11.7722356
130.7827582
2.76242E−30
6.56725E−28


Eef1g
0.710194382
10.38511305
129.8469723
4.42619E−30
1.03701E−27


Malat1
−0.868303233
14.66863653
121.7575723
 2.6084E−28
6.02392E−26


Ubb
−0.762236847
12.90475161
121.6648746
2.73317E−28
6.22316E−26


Klf2
1.82007794
9.96085156
120.599792
4.67547E−28
1.04977E−25


Lmnb1
−1.740434723
9.781467143
118.6227432
1.26668E−27
2.80509E−25


Rora
−1.598997856
9.982434473
118.1357505
1.61918E−27
3.53726E−25


Ly6c2
2.908662907
9.26599066
116.5377425
3.62416E−27
7.81176E−25


Rgs1
−1.547472527
11.08991268
116.1402089
4.42854E−27
9.41997E−25


Lgals3
−2.134870543
10.20014079
115.7963321
5.26703E−27
 1.1058E−24


Rps11
0.40051847
12.26303456
114.4072626
1.06115E−26
2.19929E−24


Nkg7
−1.20400333
11.21028082
113.5760073
1.61375E−26
3.30227E−24


Actg1
−0.766856598
12.09916335
113.4831269
1.69114E−26
3.41738E−24


Rps21
0.618883175
10.92367777
112.720221
2.48475E−26
4.95908E−24


Rpl34
0.391798461
11.98010954
112.6674999
2.55171E−26
 5.0306E−24


Hspa5
−0.993664741
10.97848639
111.8802176
3.79563E−26
 7.3928E−24


Rpl5
0.611265768
10.56748783
107.8963541
2.83208E−25
 5.4504E−23


Ms4a4c
1.513771908
9.182808698
106.6293484
5.36724E−25
1.02079E−22


AW112010
−0.988007877
11.38325918
105.2605754
1.07086E−24
2.01296E−22


Gm9493
0.730569756
10.33344069
103.3639123
2.78909E−24
5.18258E−22


Eef1b2
0.731249225
10.07534778
102.783618
3.73828E−24
6.86739E−22


Satb1
1.098437345
9.757020312
97.00843642
6.90326E−23
1.25391E−20


Bcl2a1b
−1.109097656
10.392145
96.86778072
 7.4115E−23
1.33127E−20


H2-D1
−0.456289267
12.28188836
94.13284731
2.95042E−22
5.24138E−20


Rpl15
0.533360835
10.73579
93.09133191
 4.9936E−22
8.77462E−20


Id2
−1.265718013
10.64562852
92.85856673
5.61682E−22
9.73731E−20


Rpsa
0.43236632
11.60003186
92.84273602
5.66193E−22
9.73731E−20


Actn2
−2.0324523
9.563395975
91.91238307
9.06003E−22
1.54173E−19


Hmgb2
−1.114787643
10.71118457
91.81149284
9.53391E−22
1.60547E−19


Sub1
−0.737071501
11.14875127
89.22633202
3.52131E−21
 5.8686E−19


Rps10
0.438097308
11.22174231
88.54528471
4.96844E−21
8.19589E−19


Npm1
0.597146323
10.46909627
86.76885919
1.21975E−20
1.99177E−18


Prr13
−0.908211922
10.23791505
86.28709705
1.55621E−20
2.51576E−18


Fau
0.332341064
12.3016547
85.91336849
1.87994E−20
3.00901E−18


Rps25
0.439065454
11.11865132
83.92930223
5.12788E−20
8.12719E−18


H3f3b
−0.530510549
12.34438324
81.79231815
1.51165E−19
2.37256E−17


Gm8730
0.630359335
10.44458017
81.7380171
1.55376E−19
 2.4152E−17


Hsp90aa1
−1.362572556
10.76842184
81.57324402
1.68885E−19
2.60019E−17


Rpl38
0.406994752
11.67453348
81.35408494
1.88691E−19
2.87772E−17


Eef1a1
0.337289144
12.38172177
81.20495197
2.03481E−19
3.07428E−17


Gzma
−3.37552039
10.72559232
80.50608545
2.89811E−19
4.33804E−17


Asb2
−1.791797421
9.480787244
79.5436343
4.71692E−19
6.99576E−17


Rpl13a
0.303669712
13.13151966
77.74308062
1.17354E−18
1.72467E−16


Srgn
−0.611233479
11.37079235
76.8364188
1.85721E−18
2.70483E−16


Cd3g
−0.586508979
11.10946418
76.75229222
1.93803E−18
2.79734E−16


Glrx
−1.532798827
9.565798465
76.67665283
 2.0137E−18
2.88084E−16


Ehd1
−1.565102367
9.471456532
75.11001307
4.45203E−18
6.31329E−16


Cldnd1
−1.473759599
9.794845581
73.58230211
9.65263E−18
1.35691E−15


Lef1
1.198869799
9.289435172
73.37527093
1.07201E−17
1.49397E−15


Lsp1
−0.866196977
10.32146081
73.35557179
1.08276E−17
1.49606E−15


S1pr1
1.292942181
9.290336532
73.11132504
1.22539E−17
1.67879E−15


Rpl41
0.279576202
12.79518827
72.94991104
1.32982E−17
1.80655E−15


Lgals1
−0.901478041
11.62752559
72.79719209
1.43681E−17
1.93562E−15


Bcl2a1d
−1.192576834
9.947930815
72.58098997
1.60316E−17
2.14187E−15


Gnas
−0.711696987
10.37731863
72.1045167
2.04096E−17
2.70444E−15


Dnaja1
−1.075977432
10.76377534
70.94687086
3.66975E−17
4.82319E−15


Cfl1
−0.562064217
11.11281134
70.41556668
4.80393E−17
6.26294E−15


Lat
−0.633486956
10.61718655
69.93751294
6.12132E−17
7.91658E−15


Pfn1
−0.565983596
12.1455777
69.90284732
6.22985E−17
7.99299E−15


Dusp10
1.197430185
9.475524966
67.83386892
1.77868E−16
 2.2641E−14


Ppp1ca
−0.731462957
10.29792302
66.3498649
3.77585E−16
4.76878E−14


Sidt1
1.119553649
9.182427708
66.2912716
3.88977E−16
4.87458E−14


Stx11
−1.479579129
9.444380704
63.84574775
1.34552E−15
1.67321E−13


Acot7
−1.179868494
9.577117541
63.70742047
 1.4434E−15
1.78122E−13


Gzmb
−2.305535859
10.35028864
63.25612494
1.81502E−15
2.22285E−13


Prkar1a
−0.733240671
10.10978596
61.63694877
4.12996E−15
5.01991E−13


Hsp90ab1
−0.785617269
11.19690024
61.01970556
5.65064E−15
6.81703E−13


Arpc2
−0.510019831
10.79489599
60.85255662
6.15136E−15
7.36614E−13


Lilr4b
−1.22658672
9.778162201
60.71605134
6.59304E−15
7.83699E−13


Atp11b
1.060573176
9.338510173
60.4715511
7.46496E−15
8.80865E−13


Rpl10
0.383923631
11.48649796
60.42271086
7.65249E−15
8.96451E−13


Rpl13-ps3
0.784182986
9.661827958
60.21552598
8.50189E−15
9.88788E−13


Ccl5
−1.592460232
13.31119099
59.20789454
1.41864E−14
1.63812E−12


Gzmk
−1.83313636
9.363691919
58.79982239
1.74557E−14
2.00134E−12


Fam110a
−1.377632721
9.494282763
58.37016172
 2.1716E−14
2.47226E−12


mt-Atp6
0.342233346
12.4713887
57.14770681
4.04279E−14
4.57033E−12


Cdkn1a
−1.510364992
9.693205615
56.90889505
4.56476E−14
5.12458E−12


B2m
−0.27669249
12.79981273
55.08980998
1.15146E−13
1.28376E−11


Ccr5
−1.45838306
9.514442093
55.02519732
1.18994E−13
1.31758E−11


Cyba
−0.620409355
10.43089398
54.4652912
1.58218E−13
1.73996E−11


Shfm1
−0.655842341
10.08130292
52.76367247
3.76195E−13
4.10917E−11


Rpl31
0.405514605
10.87146125
52.0602909
5.38224E−13
5.83955E−11


D16Ertd472e
−1.069168808
9.624003202
51.79827152
6.15059E−13
 6.6287E−11


H2-K1
−0.434001092
11.60996642
51.75940054
6.27357E−13
6.71646E−11


Ctla4
−0.957465278
10.15301816
51.74174906
6.33023E−13
6.73253E−11


Odc1
−1.055185894
10.45347895
51.72816846
6.37417E−13
6.73495E−11


Lztfl1
−1.425717433
9.420903385
51.65487227
6.61662E−13
6.94574E−11


Pik3ip1
1.016427354
9.192060991
51.64159498
6.66152E−13
6.94775E−11


Hspa8
−0.563966934
12.33059948
50.45462778
1.21952E−12
1.26377E−10


Rpl22
0.405100818
10.6070495
49.87592861
1.63782E−12
1.68643E−10


Ddx5
−0.472190603
11.19925927
49.77420376
1.72497E−12
1.76493E−10


Tsc22d3
0.910948391
9.704543117
49.56953718
1.91464E−12
1.94667E−10


Gapdh
−0.589658183
10.56193028
49.41524912
2.07129E−12
2.09278E−10


Ubl5
−0.591958802
10.27392154
49.13961783
2.38377E−12
2.39354E−10


Rpl23a-ps3
0.503304075
10.7199609
48.2436768
 3.7641E−12
 3.7562E−10


Cd6
−0.869658646
9.931712402
47.92252282
4.43399E−12
4.39754E−10


Sh3bgrl3
−0.457786105
11.24479119
47.90991163
 4.4626E−12
4.39893E−10


Tceb2
−0.592952025
10.20132116
47.42391532
5.71808E−12
5.60233E−10


Pde2a
0.987337446
9.177524209
47.36238186
5.90042E−12
5.71175E−10


Bhlhe40
−0.629828205
10.72360829
47.36525297
5.89179E−12
5.71175E−10


Maf
−1.20235901
9.568711542
47.31232275
6.05305E−12
5.82462E−10


Rpl30
0.364473767
10.96403143
47.01596378
7.04109E−12
6.73528E−10


S100a4
−1.45718699
9.866407172
46.84257616
7.69239E−12
7.31501E−10


Abracl
−0.751666052
9.935290448
46.8085049
 7.8273E−12
7.39977E−10


Gnb2l1
0.413063836
10.54000009
46.77545408
7.96042E−12
7.48187E−10


Ifng
−1.860168053
9.686682514
46.5515956
8.92376E−12
8.33881E−10


Pkp3
−0.992944373
9.709717317
45.7083226
1.37238E−11
1.27506E−09


Smim3
−1.264653022
9.350059212
45.17112102
1.80548E−11
1.66785E−09


Gdi2
−0.736720685
9.887611627
44.73070501
2.26084E−11
2.07663E−09


Oaz1
−0.345126362
11.23125359
44.4427732
2.61902E−11
2.39204E−09


Il7r
0.762433294
9.753528328
44.19134887
2.97794E−11
2.70458E−09


Manf
−0.873653643
9.719335527
44.10873804
3.10631E−11
 2.8054E−09


Lpxn
−0.856247558
9.719586419
43.85349118
3.53899E−11
3.17841E−09


Dynll1
−0.677834564
10.05622605
43.12939789
5.12366E−11
4.57619E−09


Dph5
0.964698786
9.213978081
43.09901238
5.20385E−11
4.62228E−09


Cd82
−0.685765836
10.1275368
42.58772697
6.75821E−11
5.97012E−09


Cd74
−1.790229737
9.434235572
42.16081243
8.40678E−11
7.38609E−09


Hcls1
−0.884940162
9.587943614
41.89048756
9.65311E−11
8.43525E−09


Arl6ip1
−0.744621815
9.94432139
41.67387503
 1.0784E−10
9.37284E−09


Sh3bp5
0.906477381
9.188376986
41.65015897
1.09157E−10
9.43649E−09


Tank
−1.122428469
9.370123349
41.51736594
1.16829E−10
 1.0046E−08


Tmem176a
−1.561868972
9.404491611
41.45307093
1.20735E−10
 1.0327E−08


Ermn
−1.384380136
9.30459238
41.37987416
1.25341E−10
1.06646E−08


Ikzf3
−1.234027314
9.310526312
41.26331133
1.33043E−10
1.12606E−08


Clic1
−0.576996189
10.32552274
41.07895162
1.46202E−10
1.23099E−08


Gm8369
0.656116673
9.924740414
40.88479166
1.61473E−10
1.35252E−08


Uap1
−1.127448986
9.373339988
40.5920089
1.87572E−10
1.56304E−08


Ubald2
−0.647705139
10.62015695
40.48582272
1.98048E−10
1.64187E−08


Cd5
−0.942120559
9.629220038
40.26054766
2.22252E−10
1.83313E−08


Nr3c1
−1.154618397
9.448746596
40.15577128
2.34498E−10
1.92431E−08


Anxa2
−0.939195153
9.842340624
40.03380626
2.49605E−10
2.03794E−08


Tmem176b
−1.478158733
9.44810635
39.8238096
2.77936E−10
2.25785E−08


Ikzf2
−1.348475271
9.298837321
39.71435404
2.93957E−10
2.36423E−08


AB124611
0.925207051
9.180451135
39.72365158
2.92561E−10
2.36423E−08


Serpinb1a
−1.843570985
9.512641434
39.59191023
3.12977E−10
2.50475E−08


Stk24
−0.91383667
9.608549705
39.52447346
3.23974E−10
2.57998E−08


Efhd2
−0.999146886
9.465521733
39.13275436
3.95945E−10
3.13767E−08


Ucp2
−0.65915216
10.0128664
39.02218127
4.19018E−10
3.30431E−08


Calr
−0.677910097
10.0207225
38.16235309
6.50963E−10
5.10848E−08


Cdc42
−0.468486577
10.40471662
38.14980497
6.55163E−10
 5.1166E−08


Fam101b
0.953455397
9.174681163
38.04046828
6.92924E−10
5.38549E−08


Serpina3g
−1.177709452
9.674291957
38.02477696
6.98519E−10
 5.403E−08


Socs3
0.876228257
9.49233387
37.92020104
7.36982E−10
5.67336E−08


Hsp90b1
−0.822947909
9.703951568
37.82898625
7.72258E−10
5.91674E−08
















TABLE 3L







LPL-11 vs. All












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Gata3
2.78725309
9.445536089
651.0499191
 1.3206E−143
 2.1349E−139


Ccl5
−5.30741133
13.31117347
348.0391179
 1.1328E−77
9.15641E−74


Tnfsf8
2.436704618
10.01782193
323.7980169
2.15589E−72
1.16174E−68


Rpl37a
0.622775272
12.61561004
294.538539
5.10124E−66
2.06167E−62


Il5
1.913428082
9.162955407
286.2336147
 3.2903E−64
1.06382E−60


Socs2
2.183612465
9.351639381
270.9835186
6.92719E−61
1.86642E−57


Cldnd1
1.666913086
9.794858969
252.1526177
8.81368E−57
2.03546E−53


Gpx4
1.087119142
10.07609679
226.2535433
3.91211E−51
7.48478E−48


Sub1
0.883083724
11.1487561
226.1278761
4.16696E−51
7.48478E−48


AW112010
−1.474129989
11.38325184
209.9972312
1.37553E−47
2.22368E−44


Ms4a4b
−1.446723816
10.75185359
195.3518584
2.15883E−44
 3.1727E−41


Ramp3
2.145977545
9.936713117
192.8546395
7.57266E−44
1.02016E−40


Il4
2.011817772
9.174329336
191.3077471
1.64772E−43
 2.049E−40


Itk
1.193676475
9.814313226
190.8271332
2.09791E−43
2.42249E−40


Samsn1
1.384203515
9.795369332
186.5931584
 1.762E−42
1.89896E−39


Pfn1
−0.962844016
12.14557821
185.1929867
3.56178E−42
3.59874E−39


Hilpda
1.535712444
9.667495774
172.5446413
2.05786E−39
 1.9569E−36


Nkg7
−1.499609631
11.21026875
166.4588249
4.39179E−38
3.94431E−35


Lgals7
2.061472613
9.201968358
164.5758087
1.13233E−37
9.63437E−35


Il1rl1
1.727815818
9.173799372
163.5329974
1.91329E−37
1.54652E−34


H2afz
1.030291278
10.7654377
151.5333042
8.01359E−35
6.16893E−32


Tnfrsf18
1.025507117
10.06770513
150.5249306
1.33114E−34
9.78146E−32


Rps9
0.436769402
11.99536279
149.9878754
1.74425E−34
1.22598E−31


Rpl23
0.492111858
11.70855206
147.5273126
 6.0181E−34
4.05369E−31


Ptpn13
1.508179564
9.18673375
145.8278672
 1.4157E−33
 9.1545E−31


Fam213a
1.52409344
9.188402088
144.3827407
2.93029E−33
1.82197E−30


Fam46a
1.816227914
9.5043122
140.7033004
1.86819E−32
1.11856E−29


Actb
−1.645143094
13.40506597
136.9264382
1.25136E−31
7.22482E−29


Ms4a6b
−1.276285498
10.19495673
136.8462663
1.30292E−31
7.26309E−29


Dusp10
1.527437104
9.475525704
135.6542382
2.37485E−31
1.27972E−28


Crem
1.428290135
10.06687059
135.0047119
3.29386E−31
 1.7177E−28


Gm8369
−1.539746047
9.92472512
126.5999821
2.27259E−29
1.14808E−26


Ptgir
1.113446316
9.163290516
126.4785278
2.41602E−29
1.18356E−26


Rpl21
0.435636427
11.76870978
125.261045
4.46212E−29
2.12161E−26


Rps28
0.55761229
11.70740612
123.962248
8.58618E−29
3.96583E−26


Tpt1
0.441970525
11.78330363
122.7748436
1.56206E−28
7.01453E−26


Got1
1.376458958
9.855680992
121.8512873
2.48806E−28
1.08708E−25


Calca
3.14777933
9.213255376
121.6092469
2.81089E−28
1.19581E−25


Eef1a1
0.393660221
12.38173251
121.482608
2.99616E−28
1.24195E−25


Spcs3
1.235400868
9.34767364
119.8851623
6.70309E−28
2.70905E−25


Tnfrsf4
1.148431166
10.62221384
117.9370243
1.78981E−27
7.05711E−25


9230102004Rik
0.982375521
9.161433502
116.704018
 3.3327E−27
1.28277E−24


Rps12-ps3
0.943779186
9.914308593
115.0032374
7.85691E−27
2.95383E−24


Frmd4b
1.36706003
9.262065137
114.9482961
8.07763E−27
 2.9678E−24


Rps12
0.623247383
10.77054436
114.1870765
1.18577E−26
 4.2598E−24


Wdr89
0.942765197
10.42589899
111.5161523
4.56074E−26
 1.6028E−23


Rplp2
0.431571166
11.91003287
109.5583778
1.22445E−25
4.21158E−23


Arpc3
0.640798492
10.54004275
108.871016
1.73198E−25
5.83315E−23


Serpina3g
−2.073186267
9.674281316
107.2026936
 4.0189E−25
1.32591E−22


Rps21
0.584104575
10.92368799
107.0529425
4.33434E−25
1.40138E−22


Rpl23a
0.377714752
12.17554432
106.7452237
5.06241E−25
1.60469E−22


Lcp1
−0.975234565
10.29117732
105.6943068
8.60342E−25
2.67467E−22


Rps29
0.448556786
12.24466765
104.4778208
1.58963E−24
4.84867E−22


Epsti1
−1.239773795
9.946039862
104.081923
1.94121E−24
5.81142E−22


Serinc3
1.130652275
9.437689744
103.9755135
2.04832E−24
5.91306E−22


Bcl2a1b
0.824160134
10.3921492
103.9953976
2.02787E−24
5.91306E−22


Rps24
0.413547684
12.0058264
103.6828838
2.37434E−24
6.73395E−22


Lsp1
−0.985266793
10.32146161
103.541068
2.55052E−24
7.10892E−22


Tnfaip8
1.025889715
9.63021053
102.1887411
 5.0476E−24
1.38304E−21


Arhgdib
−0.776390788
10.73175766
101.3554603
 7.6873E−24
2.07122E−21


Gimap4
−0.848082586
10.52505641
100.3208288
1.29607E−23
3.43479E−21


Rps20
0.532114639
11.06849484
100.0530592
1.48369E−23
3.86859E−21


Rpl35a
0.383212685
11.72340173
98.87799881
2.68546E−23
6.89098E−21


Rps7
0.381427202
11.94309364
98.49929886
 3.2514E−23
8.21283E−21


Rpl26
0.386577119
11.57421057
96.7395076
7.90755E−23
1.96667E−20


Ltb
−1.399434777
10.15519086
96.12700077
1.07745E−22
2.63911E−20


Rpl30
0.473159497
10.96404079
94.5744842
2.36041E−22
5.69529E−20


Gramd3
−1.361397858
10.20644171
91.6866376
1.01548E−21
2.41416E−19


Dgat1
1.136334074
9.778640319
91.23289682
1.27719E−21
2.99233E−19


Gzma
−3.702496857
10.72561706
90.72545605
1.65056E−21
3.81185E−19


Epas1
1.267743009
9.190648446
90.47197387
1.87616E−21
4.27182E−19


Fdx1
1.231395993
9.293641737
90.38007272
1.96536E−21
4.41277E−19


Cd48
−1.406318811
9.721163919
90.22654102
2.12394E−21
 4.7035E−19


Rps23
0.329029763
12.48528629
90.09886224
2.26552E−21
4.94924E−19


Rps15
0.390713377
11.49069805
87.8944932
6.90406E−21
1.48815E−18


Il17rb
0.719078081
9.159374823
85.61480456
2.18632E−20
4.65054E−18


Rpl9-ps6
0.874151789
9.840821559
85.0333623
2.93373E−20
6.15931E−18


Gpr18
−1.78216716
9.406620641
84.12800323
4.63755E−20
9.61162E−18


Ipmk
1.273590944
9.271358545
83.86447633
5.29882E−20
1.08431E−17


Coro1a
−0.73247519
10.77299576
83.22874718
7.30871E−20
1.47691E−17


Abhd17c
1.101899836
9.339495287
82.97818141
8.29641E−20
 1.6558E−17


Rpl9
0.330253784
11.84222846
82.11044546
1.28691E−19
2.53709E−17


Rps10
0.393627927
11.22175565
80.59909901
2.76486E−19
5.38514E−17


Gzmb
−2.701378123
10.35029484
80.36660647
3.11007E−19
 5.9854E−17


Cd3e
−0.76840368
10.37494886
80.21369816
 3.3603E−19
6.39089E−17


Gm9843
0.686156797
10.49140966
78.62252705
7.51871E−19
1.41334E−16


Ccr5
−1.657767592
9.514438228
78.43448041
8.26961E−19
1.53663E−16


Cfl1
−0.559969156
11.11281656
78.41189297
8.36471E−19
1.53663E−16


Rpl17
0.311214497
12.29662158
77.9954965
1.03276E−18
1.87591E−16


Il13
1.584467555
9.164846146
76.40414181
2.31166E−18
4.15225E−16


Rac2
−0.536378869
11.09605583
75.73073771
3.25107E−18
5.77547E−16


Rpl36a
0.451614988
11.04526124
73.03434504
1.27413E−17
2.23887E−15


Rps3a1
0.326717425
11.67386184
72.76462129
1.46072E−17
2.53914E−15


Rpl38
0.370765232
11.67453685
72.51121348
1.66086E−17
2.85632E−15


Rps27rt
0.626079443
11.16192697
72.33582672
1.81522E−17
3.08893E−15


Rpl6l
0.60326212
10.20612343
72.15571984
1.98868E−17
3.34886E−15


Fosl2
1.091970828
9.531552388
71.34388687
3.00086E−17
5.00123E−15


Vps37b
0.724244734
10.60465641
71.30913819
3.05418E−17
5.01342E−15


Dnajc15
−0.897639796
9.893114381
71.29881659
 3.0702E−17
5.01342E−15


Cd7
−2.214869992
9.494180616
70.61890677
4.33344E−17
7.00544E−15


Klf2
−2.182862403
9.960838309
70.52757429
4.53878E−17
7.26474E−15


Rpl23a-ps3
0.582425672
10.71997612
70.42054103
4.79184E−17
7.59459E−15


Rpl13
0.292940011
12.63772195
69.15470278
 9.1035E−17
1.42881E−14


Rpl6
0.305809539
11.76076847
69.07620569
9.47314E−17
1.47253E−14


Ell2
1.083692654
9.233842501
68.53144299
1.24871E−16
1.92253E−14


Cd200r1
1.056706352
9.188142445
68.15502474
1.51134E−16
2.28339E−14


Ctla2a
1.029049134
10.33550568
68.16832127
1.50118E−16
2.28339E−14


Nfkb1
0.863972112
9.53708087
68.04758287
1.59597E−16
2.38894E−14


Isy1
0.955123258
9.388775206
68.01603383
1.62171E−16
 2.4052E−14


Cxcr3
−1.31367325
9.55137858
67.18697187
2.46941E−16
3.62913E−14


Abracl
−0.827023382
9.935292552
66.38855383
3.70246E−16
5.39225E−14


Elovl5
1.000670868
9.322047714
66.29789289
3.87673E−16
5.59564E−14


Rplp1
0.354849578
11.70322227
64.41465545
1.00806E−15
1.44214E−13


Ubac2
−1.232880489
9.42377083
64.35941478
1.03672E−15
1.47014E−13


Cyba
−0.621006408
10.43089692
64.18614099
1.13202E−15
1.59133E−13


Rpl10-ps3
0.822487389
9.578827067
64.11901202
1.17126E−15
1.63229E−13


Amica1
−1.523510324
9.335288888
63.701196
1.44797E−15
2.00067E−13


Rpl12
0.445699316
10.99232629
63.59632141
1.52714E−15
2.09218E−13


Emb
0.74683201
10.25092353
63.34678603
1.73338E−15
2.35477E−13


Rps6
0.277808542
12.20836688
63.27756685
1.79537E−15
2.41867E−13


Rpl19
0.270133762
12.11744948
63.03407253
2.03162E−15
2.71431E−13


Rpa2
−1.380531757
9.392692325
63.01445595
2.05195E−15
 2.719E−13


Fau
0.274449368
12.3016555
62.71392745
2.39019E−15
3.14145E−13


Gnai2
−0.748009519
10.17430832
62.26042219
3.00912E−15
3.83955E−13


Rps27a
0.301110145
11.80970228
62.2783555
2.98184E−15
3.83955E−13


Elf1
0.782440901
9.573205604
62.2557001
3.01635E−15
3.83955E−13


Btg1
−0.611493
12.25013986
62.29398453
2.95827E−15
3.83955E−13


Limd2
−0.821889253
10.08911092
62.02700461
3.38779E−15
4.27868E−13


Rpl7
0.334243439
11.21182536
61.69813298
 4.0036E−15
5.01722E−13


Rpl27a
0.292308559
11.73982066
61.44017246
4.56403E−15
5.67554E−13


Rpl22
0.408207942
10.60705713
61.37209441
 4.7246E−15
5.83037E−13


Ptprc
−0.713573469
10.11543823
61.24768507
5.03277E−15
6.16362E−13


Rps13
0.284620979
11.92518428
60.88657604
6.04597E−15
7.34881E−13


Rpl5
0.439923342
10.56750057
60.78676801
 6.3604E−15
 7.6733E−13


Slc25a3
0.594192956
9.949500334
60.65326175
6.80672E−15
8.15092E−13


Rpl8
0.310489568
11.65215979
60.46534585
7.48853E−15
8.90144E−13


Srgn
0.449658173
11.37080589
60.20798913
8.53451E−15
1.00707E−12


Rpl27-ps3
0.779626572
9.836237785
59.40764719
 1.2817E−14
1.50145E−12


Rpl39
0.322065417
11.77724389
59.04445308
 1.5415E−14
 1.7928E−12


Rpl41
0.244533547
12.79519234
59.0064913
1.57153E−14
1.81466E−12


Gm9493
0.537190778
10.33345076
58.58099131
1.95092E−14
2.23678E−12


Rps4x
0.289254484
11.84791468
58.37963616
2.16116E−14
2.46038E−12


Gzmk
−1.778766406
9.363688173
58.22977163
2.33223E−14
2.63656E−12


Chrne
1.080079344
9.215523871
58.15710461
2.41999E−14
2.71677E−12


Zfp36l2
−1.196447923
9.814176688
57.88375668
2.78074E−14
3.10024E−12


Rps5
0.281501081
12.08884857
57.86056343
2.81372E−14
3.11552E−12


Rps8
0.329920366
11.59253946
57.82162114
2.86998E−14
3.15619E−12


Ptprcap
−0.843038887
10.0401219
57.71648011
3.02756E−14
3.30699E−12


Hmha1
−0.896320622
9.750277921
57.60875529
3.19799E−14
3.46971E−12


Smap2
−1.082941862
9.515119635
57.58389709
3.23866E−14
3.49041E−12


Serp1
0.703010004
9.615297449
57.37262964
 3.6059E−14
3.86047E−12


Lck
−0.584926841
10.3166673
57.19919538
3.93832E−14
4.18861E−12


Arpc1b
−0.514495687
10.55363485
56.87151403
4.65236E−14
4.91569E−12


Psmb8
−0.547617393
10.43462296
56.15435567
 6.6999E−14
7.03316E−12


Tbc1d10c
−1.109015086
9.522686372
56.04149687
7.09574E−14
7.40063E−12


Gm2000
0.754104213
9.643824227
55.94423
7.45562E−14
7.72613E−12


Rps25
0.341236461
11.11865723
55.73810371
8.27978E−14
8.52554E−12


Prr13
−0.635092799
10.23790791
55.35597511
1.00564E−13
1.02893E−11


Arf4
0.613490192
9.974773579
55.29863988
 1.0354E−13
1.05272E−11


Sp100
−1.052989046
9.553710362
55.27939258
1.04559E−13
1.05644E−11


Rpl11
0.271060468
11.70901048
55.22698927
1.07384E−13
1.07824E−11


Alyref
−1.276590695
9.471546257
54.26812572
1.74916E−13
1.74549E−11


Tnfsf11
1.195675235
9.546999328
54.14786369
1.85956E−13
1.84427E−11


Hnrnpf
−0.542960485
10.40307656
54.04990147
1.95462E−13
1.92673E−11


Rasgrp1
0.867495082
9.487696794
53.8710296
2.14091E−13
2.09758E−11


Rps14
0.245646052
12.65498328
53.84935221
2.16466E−13
2.10807E−11


Cd160
−1.612019875
9.334774618
53.43431062
2.67386E−13
2.58836E−11


Klrd1
−1.530760278
9.372671712
53.33075396
2.81859E−13
2.71222E−11


Slfn2
−0.780872487
10.08513601
53.26722348
2.91124E−13
 2.7848E−11


Nt5e
0.983503956
9.297373639
52.50026078
4.30191E−13
4.09087E−11


Acbd7
0.727171497
9.16408021
52.47608183
 4.3552E−13
4.11732E−11


Rpl36
0.291113805
11.87411161
52.39297427
4.54346E−13
4.27033E−11


Zrsr1
0.884462945
9.173204714
51.98113864
5.60363E−13
5.23632E−11


Ero1l
0.898463636
9.301152497
51.86195302
5.95431E−13
5.53203E−11


Rab4a
0.981396634
9.180878739
51.70674863
6.44409E−13
5.95286E−11


Rpl14
0.276260435
11.87702722
51.33644975
7.78173E−13
 7.125E−11


Tnfrsf9
1.216186143
9.401994134
51.33156871
 7.8011E−13
 7.125E−11


Ccl1
2.8701985
9.258088506
51.06468191
8.93719E−13
8.11678E−11


Rpl10
0.340760182
11.48651267
51.00196212
9.22737E−13
 8.3335E−11


Rps26-ps1
0.834947975
9.373764532
50.54920683
1.16214E−12
1.04373E−10


Rps27
0.313487317
13.23490088
50.2616202
1.34556E−12
1.20178E−10


Rps17
0.442764705
10.61490628
50.23389231
 1.3647E−12
1.21219E−10


Gm11808
0.563530104
10.17399793
49.66892667
1.82006E−12
1.60782E−10


Eprs
0.923361989
9.384340903
49.48741908
1.99648E−12
1.75408E−10


Ccr4
1.037365927
9.227399089
49.14947696
2.37182E−12
2.07258E−10


Ptpn22
−0.744716395
10.09359672
48.95338111
2.62119E−12
2.27818E−10


Actr3
−0.58253223
10.23419091
48.85186728
2.76042E−12
2.38637E−10


Xist
1.36070209
9.88830013
48.50687321
3.29133E−12
 2.8302E−10


Rpl28
0.392724036
10.72545285
48.30031575
3.65693E−12
3.12794E−10


Lgals3
−1.232792314
10.20014577
47.74671945
4.84995E−12
4.12654E−10


Bcl2a1a
1.056620671
9.252638693
47.53163715
5.41234E−12
4.58093E−10


Eif2s3y
−1.186564598
9.297554666
47.39179745
5.81254E−12
4.89404E−10


Anxa2
−0.978635221
9.842357829
47.37611672
5.85922E−12
4.90778E−10


Rpl18a
0.234079517
12.84274109
47.34965143
5.93887E−12
4.94885E−10


Fam49b
−0.709772908
9.757609288
47.31498589
6.04483E−12
5.01132E−10


Cd40lg
0.891889007
9.469095126
47.26266572
6.20835E−12
5.12062E−10


Grk6
−1.023874648
9.451805892
47.22787925
6.31952E−12
5.18585E−10


Set
−0.828366713
9.773721763
47.01187204
 7.0558E−12
5.76081E−10


S100a4
−1.423147096
9.866428203
46.98623023
7.14872E−12
5.80735E−10


Arid5a
−0.881618443
9.656928977
46.45120687
9.39285E−12
7.59224E−10


Itgb2
−0.907516358
9.57508737
46.39812896
9.65076E−12
 7.7619E−10


Rpl27
0.289912917
11.47261069
46.31227214
 1.0083E−11
8.06943E−10


Pycard
−1.017137077
9.577060094
46.08847696
1.13031E−11
 9.0013E−10


Spty2d1
0.853051885
9.326966648
46.00769813
1.17789E−11
9.33422E−10


Rhoc
0.987511986
9.24424751
45.56307656
1.47802E−11
1.16554E−09


Chst12
−1.147202534
9.307931568
45.51891285
1.51172E−11
1.18633E−09


Rps16
0.244105981
12.35138152
45.46537675
1.55361E−11
1.21332E−09


Tmem64
1.093268199
9.248121955
45.0264485
1.94391E−11
1.51083E−09


Irg1
1.166366825
9.171594961
45.00188351
1.96845E−11
1.52258E−09


Rps11
0.248211858
12.26303884
44.94510537
2.02636E−11
1.55991E−09


Klf6
−1.036319624
9.897270148
44.77739178
2.20757E−11
1.68841E−09


Gm6133
0.585153871
9.885540209
44.77154418
2.21417E−11
1.68841E−09


Sik2
0.906902057
9.224898712
44.5694824
2.45488E−11
1.86318E−09


Txk
−1.156179358
9.335431681
44.50879221
2.53217E−11
1.91286E−09


Sarnp
−0.827594901
9.551872587
44.48372488
2.56481E−11
1.92849E−09


Itm2c
0.701342323
9.518100312
44.45278354
2.60566E−11
1.95015E−09


Rpsa
0.289184479
11.60004787
43.86706712
3.51453E−11
2.61824E−09


Rps3
0.225942304
11.96703538
43.69704055
3.83351E−11
2.84278E−09


Ssu72
−0.929150446
9.444716001
43.50697036
4.22452E−11
3.10425E−09


Myo1f
−1.049004748
9.304637414
43.51237732
4.21286E−11
3.10425E−09


Gnb2l1
0.366860437
10.54001608
43.15062564
5.06837E−11
3.70748E−09


Pitpna
−0.910485352
9.510883804
43.13747045
5.10256E−11
3.71568E−09


Satb1
0.745579653
9.757025507
42.83945985
5.94214E−11
4.30765E−09


Gna13
0.591042418
9.985105007
42.61542934
6.66317E−11
4.80879E−09


Fth1
0.373781364
11.58470725
42.59490598
6.73345E−11
4.83791E−09


Gabpb1
0.835408177
9.477998587
42.55353038
 6.8774E−11
4.91947E−09


Rpl15
0.344396098
10.73579943
42.1315169
8.53367E−11
6.07733E−09


Clic1
−0.535683728
10.32552855
42.07634585
8.77786E−11
6.22381E−09


Ifitm2
0.977337784
10.68417408
42.03733753
8.95472E−11
6.32148E−09


Tgfb1
0.671608382
9.751051801
41.86242946
9.79263E−11
6.88294E−09


Dnajb6
0.49894243
10.02351389
41.74117381
1.04192E−10
 7.2916E−09


Rpl32
0.23664982
12.44732842
41.59727176
 1.1215E−10
 7.8147E−09


Ifng
−1.717507241
9.686677357
41.44701983
1.21109E−10
8.40278E−09


Rpl7a-ps5
0.835650714
9.342537523
41.40691188
 1.2362E−10
8.54031E−09


Ctsw
−0.729741102
9.943517783
41.35806506
1.26747E−10
 8.6871E−09


Plcxd2
−1.101786892
9.360411229
41.3569629
1.26819E−10
 8.6871E−09


Ssr4
0.570246619
9.653687486
41.18546566
1.38448E−10
9.44369E−09


Ptp4a1
0.58771196
9.696533105
41.0105522
 1.5141E−10
1.02844E−08


Cnn2
−0.693314256
9.902894206
40.62768913
1.84178E−10
1.24578E−08


Bcl2a1d
0.63858231
9.947932761
40.61758242
1.85133E−10
1.24703E−08


Rps18
0.241335122
12.47331521
40.48050608
1.98588E−10
 1.3321E−08


Mndal
−0.841737872
9.573225112
40.46492083
2.00178E−10
1.33722E−08


Eef1b2
0.442727395
10.07535887
40.41960733
2.04875E−10
1.36296E−08


Cbx3
−1.070891558
9.518054426
40.379645
2.09108E−10
1.38543E−08


Capzb
−0.523447722
10.15887429
40.2640148
2.21858E−10
 1.4639E−08


Nck2
0.781410509
9.181413604
40.15865483
2.34152E−10
1.53874E−08


Ywhah
−0.731211687
9.721925417
40.03745907
2.49139E−10
 1.6306E−08


H2afy
−0.620358
9.930108471
39.94698726
 2.6095E−10
1.70101E−08


Rab26os
0.808791054
9.199100322
39.7121166
2.94294E−10
1.91067E−08


Esm1
−1.379695329
9.307914728
39.65850624
3.02484E−10
1.95598E−08


Rbm3
−0.469825784
10.73094825
39.54036966
3.21347E−10
2.06968E−08


Stk4
0.758728411
9.393514541
39.37433961
3.49865E−10
2.24441E−08


Usmg5
0.4807315
10.06857914
39.35044395
3.54172E−10
2.26306E−08


Ppp1cc
0.49871973
10.14022773
39.20971704
3.80641E−10
2.42262E−08


Efhd2
−0.874966943
9.465518512
39.00726633
4.22231E−10
2.67678E−08


1810058I24Rik
−0.854214534
9.463226674
38.99196176
4.25554E−10
2.68731E−08


Tarm1
0.349845066
9.158101881
38.98305009
4.27501E−10
 2.6891E−08


Ifi203
−0.937675411
9.466821262
38.51022019
5.44677E−10
3.41289E−08


Nfkbie
0.776225335
9.398337686
38.4527893
5.60944E−10
3.50124E−08


Sept7
−0.781596305
9.59369479
38.35737928
5.89049E−10
3.66253E−08


Rpl37
0.232492992
12.07300053
38.08056479
6.78829E−10
4.20458E−08


Riok1
0.83556849
9.379908874
38.03508968
6.94837E−10
 4.2873E−08


Bin2
−0.817818919
9.612865616
37.72529296
8.14417E−10
5.00603E−08


Scamp3
−0.845996416
9.450290953
37.57880894
8.77931E−10
 5.376E−08


Cd69
−1.012008029
9.886570775
37.5387415
8.96152E−10
5.46687E−08
















TABLE 3M







LPL-0 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hspala
−3.825403493
11.185063
645.7540972
 1.8729E−142
 1.5139E−138


Dnajb1
−2.99161603
10.75617704
646.5297575
 1.2701E−142
 1.5139E−138


Ubb
−0.822066561
12.91815268
545.542542
  1.174E−120
 6.3264E−117


Hsp90aa1
−1.66428051
10.89396783
533.0215097
 6.2174E−118
 2.5127E−114


Hsp90ab1
−1.143395141
11.28555087
489.4360578
 1.8903E−108
 6.1116E−105


Malat1
−0.834514356
15.05517862
480.5825476
 1.5958E−106
 4.2997E−103


Dnaja1
−1.340678809
11.00180648
424.3156706
2.80608E−94
6.48045E−91


Hspa8
−0.841935877
12.34011222
389.8667875
8.84867E−87
1.78809E−83


Hsph1
−1.682363639
9.992887058
286.2067369
3.33497E−64
5.99036E−61


Hspe1
−1.262621525
10.53897111
284.1409882
9.40213E−64
1.51995E−60


Jund
−0.757938516
12.16529797
274.712105
1.06649E−61
1.56736E−58


Hspa1b
−1.813713236
9.880656558
192.3062295
9.97577E−44
 1.3439E−40


Rpl35
0.479975201
11.30628837
180.4188355
 3.9262E−41
4.88238E−38


Hspd1
−1.057296091
10.15136767
143.4046976
4.79454E−33
5.53632E−30


Fosb
−1.249403116
9.939486915
142.5770614
7.27286E−33
7.83821E−30


Rbm3
0.507343098
10.86474429
133.5193484
6.96011E−31
7.03232E−28


Rpl27-ps3
0.733939207
10.1630502
126.7813677
2.07409E−29
1.97234E−26


Eef2
0.365125682
11.39715697
125.7387136
3.50754E−29
3.15016E−26


Zfp36l2
0.861788833
10.24225162
118.3228897
 1.4734E−27
1.25363E−24


Rpl9-ps6
0.665300057
10.19128936
115.4607797
6.23806E−27
5.04223E−24


Gm8730
0.501024919
10.67600704
115.0937451
7.50637E−27
5.77848E−24


Rpl22l1
0.470188136
11.02604766
114.7398327
8.97303E−27
6.59354E−24


Rpl32
0.276004844
12.43016279
112.5208191
2.74765E−26
1.93124E−23


Rpl29
0.373802656
11.30509047
110.5431633
7.45054E−26
5.01856E−23


Rpl6l
0.518002583
10.48321852
101.9448287
5.70898E−24
3.69166E−21


Junb
−0.466016075
12.18505258
98.00914384
4.16455E−23
2.58939E−20


Rplp0
0.249731984
12.38724467
96.03494503
1.12873E−22
6.75819E−20


Chchd2
−0.452053053
10.66873479
94.44852779
2.51549E−22
1.45234E−19


Rgcc
−1.083204205
10.02460697
91.73836745
9.89281E−22
5.51473E−19


Rpl18
0.254662339
11.84337657
86.96767873
1.10309E−20
 5.9442E−18


Ddx5
−0.364346068
11.32206669
82.20282545
1.22814E−19
6.40456E−17


Cacybp
−0.759965312
9.974878831
81.02462915
2.22922E−19
1.12617E−16


Lmna
−0.896054608
10.10046144
77.25333728
1.50377E−18
7.36666E−16


Gm9843
0.424425093
10.7167237
76.61162997
 2.0811E−18
9.89504E−16


Cdkn1a
−0.802900828
10.20349727
74.35181316
6.53652E−18
3.01913E−15


Rps18-ps3
0.682699869
9.936337431
73.30477018
1.11099E−17
4.98897E−15


Cd160
0.933946071
9.842212445
72.70824087
1.50305E−17
6.56712E−15


Gzma
1.209224468
10.74237183
70.50937153
4.58085E−17
1.94879E−14


Rpl13a
0.174478619
13.13700027
69.64459685
 7.1013E−17
2.94358E−14


Odc1
−0.554763585
10.71341295
69.11801272
9.27444E−17
3.74827E−14


Atf3
−0.87943707
9.821862051
68.15164877
1.51393E−16
5.96931E−14


Hspa5
−0.432882858
11.06371391
66.89489047
2.86376E−16
1.10228E−13


Gm9493
0.415290628
10.58239681
66.56840727
3.37959E−16
1.27057E−13


Epsti1
0.518154471
10.33595192
65.73125853
5.16797E−16
1.89876E−13


Eif3f
0.334919369
10.83491205
65.21112438
6.72886E−16
2.41731E−13


Kdm6b
−0.502890922
10.78968221
64.63386514
9.01918E−16
3.16965E−13


S100a4
0.92404098
10.00434996
63.64817399
1.48747E−15
5.11626E−13


Ccl5
0.726508356
13.19304376
63.37342879
1.71009E−15
5.75945E−13


Fam110a
−0.691881356
9.98944843
62.94516444
2.12542E−15
7.01216E−13


Ubald2
−0.420100725
10.91847462
61.80199233
 3.7979E−15
1.22794E−12


Rps11
0.206504838
12.2866429
60.53858145
7.21504E−15
2.28703E−12


Rpl3
0.207637882
12.17538078
59.964028
 9.6607E−15
3.00336E−12


Limd2
0.46356712
10.41509448
58.64505882
1.88842E−14
5.76003E−12


Rpl36-ps3
0.600107604
9.956192534
58.34228896
2.20258E−14
6.47399E−12


Rpl10-ps3
0.588938103
10.00304739
58.37673424
2.16435E−14
6.47399E−12


Gm2000
0.552978434
10.04573455
58.2135153
2.35158E−14
6.78851E−12


Crem
−0.555480946
10.37476775
58.14841144
 2.4307E−14
6.89382E−12


Satb1
0.611847835
10.18239119
57.22454132
3.88789E−14
1.08365E−11


H2-Q6
−0.52349562
10.11218978
55.63954367
8.70547E−14
 2.3853E−11


Rac2
0.278484799
11.27241752
55.32603535
1.02107E−13
2.75111E−11


Rpl24
0.215735106
11.83074602
55.08988222
1.15142E−13
3.05145E−11


H2-K1
−0.242269234
11.67413497
54.76242772
1.36016E−13
3.54652E−11


Ifrd1
−0.490058089
10.42505666
54.57837129
1.49371E−13
 3.8329E−11


Eno1
0.480893285
10.2518593
54.42764048
1.61278E−13
4.07379E−11


Rgs10
0.584571469
10.06092484
53.57232916
2.49245E−13
6.19892E−11


Ptprcap
0.462562077
10.30191657
52.78189829
3.72721E−13
 9.1294E−11


Rpl15
0.285131556
10.91329125
52.45039836
4.41253E−13
1.06467E−10


Fus
−0.436843347
10.31636377
51.74106738
6.33243E−13
1.50544E−10


Apobec3
0.580477188
9.941216731
51.13331646
 8.6301E−13
2.02195E−10


Wdr89
0.360242636
10.60823124
51.02458523
9.12163E−13
2.10658E−10


Prr7
−0.512955962
10.2326335
49.73875281
1.75642E−12
 3.9992E−10


Cd52
0.261151609
11.82769179
49.55775305
1.92617E−12
4.32479E−10


Actg1
0.279020484
11.92138436
49.3310168
2.16217E−12
4.78816E−10


Fth1
−0.254879504
11.68995556
49.06749956
2.47304E−12
5.40259E−10


Rpsa
0.221212609
11.63951649
48.74914351
2.90886E−12
6.26994E−10


Hmgb2
0.380619263
10.77568432
47.80559174
4.70648E−12
1.00112E−09


Gm10073
0.50591008
10.0938124
47.04184308
6.94873E−12
1.44648E−09


Ltb
0.46912106
10.47411608
47.03326566
 6.9792E−12
1.44648E−09


Rpl7a-ps5
0.593867674
9.839399427
46.10042491
1.12344E−11
2.29893E−09


Bag3
−0.676847869
9.761603714
45.80267572
1.30785E−11
2.64283E−09


Rgs2
−0.602713321
10.33738405
45.56039753
1.48004E−11
2.95387E−09


mt-Nd1
−0.27246384
11.38477942
44.99146781
1.97895E−11
3.90142E−09


Selplg
0.361247701
10.47107152
44.61343362
2.40039E−11
4.67527E−09


Rps12-ps3
0.429501896
10.24219127
44.54830901
2.48158E−11
4.77585E−09


Itpkb
−0.536976006
10.03354471
43.56508254
4.10091E−11
7.79945E−09


Lcp1
0.358521569
10.53990253
43.01457134
5.43337E−11
1.02135E−08


Rps10
0.229905401
11.28625925
42.82120188
5.99786E−11
 1.1145E−08


Shisa5
0.253218689
11.20411978
42.66916005
6.48263E−11
1.19089E−08


Cd7
0.905512708
9.951566624
42.42624652
7.33984E−11
1.33321E−08


Btf3
0.265152023
10.86771989
42.36584762
7.57004E−11
1.35975E−08


Eif1
−0.185728716
11.94746374
41.72703666
1.04948E−10
1.86438E−08


Gm10076
0.471465459
10.05875362
41.19742905
1.37603E−10
2.41793E−08


Arhgdib
0.291487089
10.83943531
41.11935386
1.43211E−10
2.48941E−08


Hmha1
0.438419112
10.13557056
40.84407814
1.64872E−10
2.83545E−08


Cnn2
0.404936534
10.25178545
40.75026013
 1.7298E−10
2.94358E−08


Rps6
0.159056414
12.23920984
40.68855047
 1.7853E−10
3.00637E−08


Itgae
0.677929929
9.8104067
40.59773584
1.87023E−10
3.11693E−08


Fam169b
0.616416705
9.830231324
40.37061673
2.10077E−10
3.46541E−08


Rps3
0.163758935
11.98064091
40.05254335
2.47223E−10
4.03697E−08


Slc25a5
0.318042836
10.56075782
39.92967324
2.63273E−10
4.25607E−08


B2m
−0.138337493
12.76834333
39.80722236
2.80307E−10
4.48657E−08


Cox4i1
0.260138703
10.88297738
39.75543771
2.87838E−10
4.56195E−08


Nr3c1
−0.562192365
9.957485177
39.24465631
 3.7389E−10
5.86826E−08


Dedd2
−0.579408471
9.822902175
38.8738958
4.52086E−10
7.02733E−08


Ctla4
−0.411701514
10.49036865
38.58391272
5.24495E−10
8.07522E−08


Eif4a1
−0.320154261
10.60075837
38.51060462
 5.4457E−10
 8.3052E−08


Gltscr2
0.29072519
10.57741115
38.07787817
6.79765E−10
1.02702E−07


Il4ra
−0.505217024
10.00229239
37.82530316
7.73717E−10
1.15814E−07


Ctsw
0.38528809
10.29455423
37.78999709
7.87847E−10
1.16847E−07
















TABLE 3N







LPL-1 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Gm9843
0.873546513
10.7197657
595.3267532
 1.7389E−131
 2.8111E−127


Rps27rt
0.66236952
11.52848942
503.5200918
 1.6296E−111
 1.3172E−107


Rpl27-ps3
1.093919351
10.0373069
498.0920313
 2.4723E−110
 1.3323E−106


Rpl23a-ps3
0.706965217
10.91927368
429.8668325
1.73729E−95
7.02125E−92


Gm8730
0.825757188
10.42923933
412.6161475
9.87786E−92
3.19371E−88


Wdr89
0.707321788
10.74901788
406.5956198
 2.0192E−90
5.44041E−87


Rpl6l
0.823496109
10.31624825
405.0286107
 4.4288E−90
 1.0228E−86


Rpl9-ps6
0.947575445
10.03468303
373.6299221
 3.0329E−83
6.12873E−80


Gm11808
0.822511826
10.38635863
367.3621485
7.02331E−82
1.26154E−78


Hsp90aa1
−1.123206902
11.09080685
278.1373372
1.91209E−62
3.09108E−59


Hsp90ab1
−0.798418537
11.45738705
277.329778
2.86743E−62
4.21409E−59


Gm9493
0.669365375
10.45191966
267.6617764
3.66879E−60
4.94247E−57


Ubb
−0.506909232
13.07324632
266.81113
5.62244E−60
6.99172E−57


Hspa8
−0.727896974
12.56632486
263.6950407
2.68601E−59
3.10157E−56


Gm2000
0.978296872
9.727076162
255.8188211
 1.3994E−57
1.50818E−54


Gm6133
0.812351209
10.01774141
251.4273837
1.26841E−56
1.28157E−53


Gm10073
0.884912534
9.850676041
242.7892061
9.69501E−55
9.21939E−52


Uba52
0.636432939
10.43662801
223.7341252
1.38646E−50
1.24519E−47


Rpl35
0.477127259
11.02808234
202.7745708
5.18058E−46
4.40786E−43


Dnajb1
−1.547344284
10.51482327
202.0042358
 7.6291E−46
 6.1666E−43


Hspa1a
−2.383248273
10.75818044
185.9121194
2.48129E−42
1.91012E−39


Gm10076
0.89711374
9.682747299
184.0884505
6.20583E−42
4.56016E−39


Gm42418
1.003104559
9.481098691
164.784568
1.01946E−37
7.16548E−35


Rpl36-ps3
0.865876631
9.656996395
163.4954362
1.94979E−37
1.31335E−34


Lgals1
−0.600108402
11.14033101
159.5092037
1.44838E−36
 9.3658E−34


Tmsb4x
−0.269818422
14.02813382
157.946803
3.17881E−36
1.97649E−33


Rps18-ps3
0.841244657
9.655928496
157.4523302
4.07672E−36
 2.4409E−33


Rpl13-ps3
0.736506126
9.797721135
150.5036043
 1.3455E−34
7.76836E−32


Dnaja1
−0.748586019
11.1271812
146.0105043
1.29135E−33
7.19862E−31


Chchd2
−0.473494251
10.6318899
141.6095467
1.18374E−32
6.37879E−30


Hspe1
−0.829543845
10.55971604
128.4300367
9.03775E−30
4.71304E−27


Rpl10-ps3
0.71087493
9.678396441
125.6681744
3.63446E−29
1.83609E−26


Gm10036
0.758004858
9.644830032
125.5491133
 3.8592E−29
1.89054E−26


Fosb
−1.108477341
9.588519321
113.8078997
1.43564E−26
6.82607E−24


Rps12-ps3
0.548511272
10.07738295
110.8914873
6.24998E−26
2.88678E−23


Malat1
−0.323252323
14.85278289
110.8000382
6.54504E−26
2.93909E−23


Lmna
−0.973775479
10.04980932
110.2750726
8.52945E−26
3.72668E−23


Zfp36l2
0.805436207
9.84848683
109.5140802
1.25212E−25
5.32678E−23


Bcl2a1a
0.944045562
9.35889223
108.9881407
 1.6326E−25
6.76733E−23


Gm26917
0.725412379
9.615524653
105.7709173
8.27715E−25
3.34521E−22


Rps27
0.173150148
13.46009077
101.4527607
7.31882E−24
2.88576E−21


Gm10263
0.861643794
9.385525775
98.05106258
4.07732E−23
1.56938E−20


AY036118
0.845409107
9.416058201
95.63098079
1.38423E−22
5.20407E−20


Rps28
0.25062322
11.89396748
94.87741825
2.02547E−22
7.44177E−20


Cd160
1.023014317
9.339544002
94.02040194
3.12288E−22
1.12188E−19


Hsph1
−0.968446806
9.627387402
89.34964071
3.30852E−21
1.16273E−18


Crip1
−0.674587136
11.33426017
84.59617783
3.65972E−20
1.25879E−17


Rpl7a-ps5
0.725809858
9.475578047
82.78303389
9.15726E−20
3.08409E−17


Rgcc
−0.973619288
9.813843394
81.09113895
2.15544E−19
 7.1112E−17


Hspa1b
−1.064974481
9.37693802
77.03025429
1.68359E−18
5.44338E−16


Gm10250
0.721261574
9.432548691
75.60196203
3.47017E−18
1.09997E−15


B2m
−0.163151274
12.84650271
72.80837186
 1.4287E−17
4.44159E−15


Rps26-ps1
0.661606304
9.479500689
69.45313485
7.82519E−17
2.38683E−14


Jund
−0.386316433
11.96429312
68.4310993
1.31389E−16
 3.9334E−14


Sh3bgrl3
−0.284689974
11.2049149
67.6776059
1.92538E−16
5.65922E−14


Rpl15
0.290483657
10.7193633
66.70193998
3.15824E−16
9.11717E−14


H2-D1
−0.168989587
12.4810284
65.49651581
5.82168E−16
1.65111E−13


Rpl27
0.192059664
11.58272697
62.42809188
2.76353E−15
7.70263E−13


Rpl38
0.175857657
11.85262055
59.68977327
1.11052E−14
3.04283E−12


Ly6a
−0.476835045
10.45808259
58.56441313
1.96743E−14
5.30091E−12


Gm8186
0.616545383
9.46968788
58.47837647
2.05538E−14
5.44708E−12


Eef2
0.221539535
11.27929437
57.33667929
3.67242E−14
9.57554E−12


Gzma
0.973652374
10.76243447
56.49530585
5.63327E−14
1.44551E−11


Hspa5
−0.308894911
11.15772526
56.45869742
5.73913E−14
1.44967E−11


Cd7
1.070388028
9.401826218
56.08605501
6.93674E−14
1.72522E−11


Itgae
0.757627092
9.327390666
54.75135772
1.36785E−13
 3.3504E−11


Eif3f
0.271500969
10.59751999
54.44295273
1.60027E−13
3.86118E−11


Gm9844
0.524290137
9.613183527
53.29612718
2.86872E−13
6.81995E−11


Calm1
−0.263318971
10.92853481
52.42032047
4.48064E−13
1.04977E−10


Odc1
−0.476042872
10.65279357
52.07968366
5.32935E−13
1.23077E−10


Ly6e
−0.272932191
10.89033101
51.71546392
6.41555E−13
1.46076E−10


Rps29
0.164848186
12.37594571
51.4604536
7.30539E−13
1.64026E−10


Btg2
0.336367777
10.74241813
51.38924928
7.57522E−13
1.67755E−10


Rgs2
−0.487746639
10.60753305
50.89975769
9.72056E−13
2.12355E−10


Ccl5
0.536522565
13.43614334
49.52632899
1.95727E−12
4.21884E−10


Manf
−0.477853237
9.744077147
48.59281074
3.15022E−12
6.70085E−10


Cacybp
−0.581354688
9.602687269
48.49367478
3.31356E−12
6.95675E−10


Bcl2a1d
0.434412334
10.08987012
48.36666838
3.53526E−12
7.32706E−10


Gm42726
0.594380731
9.300818507
47.76332445
4.80905E−12
9.84089E−10


Sertad1
−0.609477867
9.448224564
45.15697193
1.81857E−11
3.67488E−09


mt-Nd1
−0.233531752
11.10794853
44.9507962
2.02048E−11
4.03248E−09


Hspd1
−0.577954866
9.977292502
44.91936291
2.05318E−11
4.04776E−09


Ctla2a
−0.562767996
10.740003
44.73531038
2.25553E−11
4.39312E−09


Rpl32
0.141395026
12.38187309
44.34948815
2.74684E−11
5.28636E−09


Tubb4b
−0.503312119
9.606172658
42.96612383
 5.5696E−11
1.05927E−08


Stk17b
0.337542743
10.09370635
42.23007718
8.11424E−11
1.52529E−08


Myl12a
−0.257568889
10.62761221
41.55518391
 1.1459E−10
2.12927E−08


Apobec3
0.551355515
9.466440219
41.0441852
1.48826E−10
2.73401E−08


H2-K1
−0.161175353
11.86466227
40.58872572
1.87888E−10
 3.4128E−08


Actb
−0.289918864
11.94107968
39.18869365
3.84762E−10
6.91118E−08


Cfl1
−0.207073499
10.90597825
38.85100187
4.57419E−10
8.12597E−08


Dynll1
−0.347573679
10.0825626
37.98225887
7.13909E−10
1.25252E−07
















TABLE 3O







LPL-2 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Dnajb1
2.544628253
9.957159242
547.4793005
 4.4499E−121
 7.1937E−117


Ubb
−0.719181201
12.62430285
513.9811277
 8.6306E−114
 6.9761E−110


Hspa1a
−4.265472016
10.29821772
492.9716733
 3.2152E−109
 1.7326E−105


Hsp90aa1
−1.538726518
10.40571986
452.2223245
 2.3685E−100
9.57241E−97


Hsp90ab1
−1.044511532
10.87430694
427.8486026
4.77686E−95
1.54445E−91


Malat1
−0.78769936
14.29544248
389.368725
1.13581E−86
3.06026E−83


Dnaja1
−1.160967215
10.50668275
365.4817217
1.80293E−81
4.16374E−78


Lmna
−1.944600206
9.721553983
326.4307695
5.75683E−73
1.16331E−69


Hspa8
−0.679127098
12.09728281
319.2408275
2.11966E−71
3.80738E−68


Gm8730
0.782167056
10.45597089
266.3217383
7.18771E−60
1.16196E−56


Rpl27-ps3
1.052879725
9.707945918
234.7431502
5.50789E−53
 8.0946E−50


Rgcc
−1.710983657
9.519354512
214.546025
1.39991E−48
1.88592E−45


Jund
−0.675872249
11.72419218
198.2604689
5.00547E−45
6.22449E−42


Rpl35
0.509475196
11.16221273
190.7930532
2.13416E−43
2.46434E−40


Gm10076
1.043288877
9.547149104
169.9338009
7.64936E−39
8.24397E−36


Hspe1
−0.935945148
9.917574254
149.4990174
2.23082E−34
2.25396E−31


Rbm3
0.521950766
10.83382101
146.4106829
1.05575E−33
1.00395E−30


Hspa1b
−1.576600791
9.179262147
137.5708581
9.04572E−32
8.12406E−29


Rpl6l
0.618995521
10.05911577
131.643752
1.79029E−30
1.52326E−27


Rpl9-ps6
0.729047513
9.70611516
124.801031
5.62624E−29
4.54769E−26


Plac8
1.004128708
10.71893409
122.0396335
2.26272E−28
1.74187E−25


Rpl10-ps3
0.891923046
9.473250861
119.5256446
8.03499E−28
5.90425E−25


Rplp0
0.287615554
12.48158976
116.701297
3.33728E−27
2.34567E−24


Gm2000
0.840498181
9.539843664
112.8076916
2.37752E−26
1.60146E−23


AY036118
1.145148849
9.18956426
110.8745505
6.30361E−26
3.91939E−23


Rps11
0.296289107
12.28172419
110.9391621
6.10147E−26
3.91939E−23


Gm9843
0.526758847
10.31729062
106.9052174
4.66978E−25
2.79599E−22


Crip1
−0.542787363
12.45883867
104.3227143
1.71907E−24
9.92517E−22


Atf3
−1.251293523
9.18931171
99.85032275
1.64361E−23
9.16225E−21


Fosb
−1.291370796
9.247423493
98.57840948
3.12407E−23
1.68346E−20


Ccl5
1.130393144
13.95145733
98.22916805
 3.7266E−23
1.94336E−20


H2-D1
−0.246378131
12.31206309
88.35060601
5.48228E−21
2.76958E−18


Gzma
1.72506778
11.40703532
87.10004234
1.03168E−20
 5.054E−18


Capg
−0.678811855
9.911087478
86.82217942
1.18731E−20
5.64529E−18


Hsph1
−1.043326409
9.286330507
85.92665756
1.86734E−20
 8.625E−18


AW112010
0.444670626
11.45893149
85.76333436
2.02812E−20
9.10739E−18


Rps12-ps3
0.611260131
9.758073988
83.06417161
7.94324E−20
3.47055E−17


Rpl23a-ps3
0.404080492
10.53373269
82.08567098
1.30314E−19
5.51089E−17


Cd160
1.385266485
9.322490009
82.0461108
1.32949E−19
5.51089E−17


Fth1
−0.334928954
11.36116368
81.30744771
1.93197E−19
7.80806E−17


Rpl32
0.226778788
12.46778482
77.92038215
1.07279E−18
4.22992E−16


Gm10073
0.679834085
9.542960393
77.36287093
1.42265E−18
5.47583E−16


Gimap4
0.436236853
10.55167371
76.30539368
2.43019E−18
9.13639E−16


Odc1
−0.775525139
9.944056332
75.38533617
3.87255E−18
1.42281E−15


Klf4
−0.945293516
9.141545035
75.21282828
4.22612E−18
1.51821E−15


Gm9493
0.455274074
10.19437568
74.04689103
7.62833E−18
2.68086E−15


Epsti1
0.517090643
10.10953489
72.18893093
 1.9555E−17
6.72607E−15


Mat2a
−0.790901455
9.401350329
72.06029678
2.08721E−17
7.02956E−15


Chchd2
−0.376545479
10.32178394
71.90568348
2.25733E−17
7.44734E−15


Zfp36l2
0.756650171
9.849977864
69.90504138
6.22292E−17
2.01199E−14


Eef2
0.256530401
11.37716606
67.65949201
1.94315E−16
 6.1594E−14


Hspd1
−0.730056082
9.56946388
67.51749258
2.08826E−16
6.36959E−14


Tnfsf11
−1.017394461
9.286194377
67.54703486
 2.0572E−16
6.36959E−14


Rpsa
0.270139325
11.60964793
67.07276037
2.61669E−16
 7.8336E−14


Ubc
−0.40985659
10.95640452
66.95470801
2.77817E−16
 8.1658E−14


Limd2
0.51944246
10.09311916
66.50384614
3.49212E−16
 1.0081E−13


Ddx5
−0.322175912
10.99872038
65.9875592
4.53778E−16
1.28698E−13


Slc25a5
0.364261547
10.54681028
65.80084048
 4.9887E−16
 1.3669E−13


Calm2
−0.417904584
10.28145878
65.82454295
4.92906E−16
 1.3669E−13


Coro1a
0.345777346
10.98317648
65.24019964
6.63031E−16
1.78643E−13


Rpl7a-ps5
0.793213904
9.266019733
64.91202919
7.83175E−16
2.07554E−13


Kdm6b
−0.838775113
9.554589167
64.82078504
8.20293E−16
2.13885E−13


Cd7
1.097172739
9.645081853
64.25147561
 1.0951E−15
2.81006E−13


mt-Co1
0.234930964
12.34097755
61.19238243
5.17614E−15
1.30746E−12


Gm11808
0.460625687
10.00121146
59.55269141
1.19063E−14
2.96119E−12


Ptprcap
0.468262667
10.14636839
59.11286349
1.48883E−14
3.64673E−12


Rpl29
0.262184011
11.36451206
57.9475349
2.69203E−14
6.49542E−12


Fam110a
−0.789509164
9.363253333
57.76260767
2.95738E−14
7.03075E−12


Rpl39l
−0.660080135
9.110893413
56.68255512
5.12159E−14
1.19994E−11


H2-K1
−0.262139741
11.50207541
55.74456131
8.25263E−14
1.90589E−11


Rpl15
0.305474683
10.64485513
55.5645479
 9.044E−14
2.05923E−11


Rpl13-ps3
0.582154842
9.53708088
55.37789667
9.94484E−14
2.23289E−11


Rps6
0.187770999
12.12258817
54.28391249
1.73517E−13
3.84256E−11


Klrk1
−0.696235891
9.782659238
52.57186427
4.14789E−13
9.06146E−11


Tnfsf8
−0.869184457
9.70280662
52.09440691
5.28954E−13
1.13608E−10


Lrrc58
0.663763744
9.389936985
52.07540605
5.34097E−13
1.13608E−10


Wdr89
0.370232576
10.18931763
51.40555181
7.51258E−13
1.57725E−10


Gpr18
0.866864527
9.411218906
51.09750716
8.78898E−13
1.82157E−10


mt-Nd1
−0.317004366
11.02202855
50.93349268
9.55492E−13
1.95525E−10


Cdkn1a
−0.798684946
9.458316973
50.86367711
 9.9009E−13
2.00072E−10


Pycard
0.551987428
9.777016154
49.94745009
1.57919E−12
3.15175E−10


Rpl24
0.19603573
11.85276508
48.38011829
 3.5111E−12
 6.922E−10


Rps26-ps1
0.687496784
9.283697606
47.81217608
 4.6907E−12
9.13612E−10


Lgals1
−0.300166557
12.3861545
47.0816269
 6.8091E−12
1.31043E−09


Rpl18
0.192896256
11.84986773
46.75524775
8.04293E−12
1.52967E−09


Tuba1b
−0.596743066
9.481069774
46.38393415
9.72093E−12
1.82731E−09


Anxa1
−0.789378766
9.401284199
45.91901426
1.23244E−11
2.26405E−09


Eif3f
0.262138365
10.76341364
45.93327111
 1.2235E−11
2.26405E−09


Arhgdib
0.264978392
10.93540557
45.35015521
1.64775E−11
2.99298E−09


S100a11
−0.308609798
10.7547102
44.90204871
2.07141E−11
3.72071E−09


Gm10250
0.669139793
9.283272179
44.69993982
2.29664E−11
4.07995E−09


Actg1
0.251896211
12.51833862
44.01460144
3.25935E−11
5.72725E−09


Rgs10
0.575935498
9.586443461
43.44995322
4.34942E−11
7.56051E−09


Cox7a2l
0.343579985
10.15410532
42.93720549
5.65254E−11
9.72116E−09


Ctsw
0.398042723
10.07562032
42.7050428
 6.3648E−11
1.07181E−08


Ifrd1
−0.475489987
9.932972127
42.71437436
6.33451E−11
1.07181E−08


Ccr5
0.70355753
9.447217476
42.05131782
8.89093E−11
1.48176E−08


B2m
−0.150244995
12.75753363
41.50989787
1.17276E−10
1.93457E−08


Gm10020
0.682288929
9.228632115
41.38530306
1.24994E−10
2.04106E−08


Hspa5
−0.33052293
10.94859063
41.32467722
1.28931E−10
 2.0843E−08


Cd44
−0.53145037
9.521890103
40.78049304
1.70325E−10
2.72621E−08


Id2
−0.415453763
10.56572827
39.70676467
2.95102E−10
4.67707E−08


Shisa5
0.241620621
10.99844694
39.41549416
3.42568E−10
5.37665E−08


Srsf2
−0.454044438
9.706632291
39.33527525
3.56934E−10
5.54827E−08


Itgae
0.822282028
9.255556378
39.14463452
3.93543E−10
6.05907E−08


H2-Q7
−0.287318486
10.53297959
38.93031587
4.39207E−10
6.63571E−08


Nmrk1
−0.649473302
9.332536123
38.93242527
4.38732E−10
6.63571E−08


Gm10036
0.542587512
9.419981674
38.78703884
4.72656E−10
7.07496E−08


Sh3bgrl3
−0.213928684
11.44744765
38.64098235
5.09381E−10
7.55472E−08


Txn1
−0.357580971
10.03413913
38.5266841
5.40102E−10
7.93753E−08


Ly6e
−0.295951849
10.68171292
37.98408352
7.13241E−10
1.03876E−07


Pim1
−0.383839128
10.72396533
37.73340148
8.11039E−10
1.17065E−07


Rpl22l1
0.264217716
10.93780735
37.71481274
8.18804E−10
 1.1714E−07
















TABLE 3P







LPL-3 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Dnajb1
−1.946456328
9.715188532
322.0257087
 5.244E−72
8.47744E−68


Ubb
−0.556526755
12.64332085
264.5357982
1.76138E−59
1.42372E−55


Hsp90ab1
−0.842446585
11.04093619
262.9635073
3.87754E−59
2.08948E−55


Malat1
−0.657557225
14.44411562
252.3465366
7.99619E−57
3.23166E−53


Dnaja1
−0.967904935
10.3986654
203.5095769
3.58093E−46
1.15779E−42


Hsp90aa1
−1.016819062
10.47401553
201.0128142
 1.2555E−45
3.38273E−42


Hspa8
−0.556803701
11.95258518
176.2104498
3.25747E−40
 7.5229E−37


Hspe1
−0.95327844
10.18983826
153.0812553
3.67718E−35
7.43066E−32


Hspa1a
−2.406354924
9.949094707
132.4560077
1.18913E−30
2.13594E−27


Cxcr6
1.050964818
10.1716772
103.8800633
2.14941E−24
3.47474E−21


Rpl27-ps3
0.677854872
9.862951638
103.2885245
2.89727E−24
4.25793E−21


Hsph1
−1.152569484
9.365951561
92.24800222
7.64673E−22
1.03014E−18


Rpl9-ps6
0.616176975
9.871909672
83.51828779
6.31293E−20
7.85037E−17


Fos
−1.398569273
9.446578559
82.92552785
8.52037E−20
9.83859E−17


Gm2000
0.661448135
9.750013041
74.89725018
 4.9586E−18
5.34405E−15


Ifi27l2a
−0.89617847
10.07811554
73.7599711
8.82175E−18
8.91328E−15


Wdr89
0.433531407
10.46020145
71.56018478
2.68929E−17
2.55736E−14


Ddx5
−0.359798857
11.12189179
71.1737819
3.27106E−17
2.93778E−14


Gm11808
0.492106141
10.18664186
69.85758986
6.37444E−17
5.42364E−14


Rpl6l
0.439579948
10.33047525
69.08823159
9.41555E−17
7.61059E−14


Ubald2
−0.531794105
10.58366091
67.3611776
2.26057E−16
1.74021E−13


Jund
−0.444613048
11.60111081
67.18787324
2.46828E−16
 1.7956E−13


Ccr2
0.982615192
9.627366071
67.12005026
2.55467E−16
 1.7956E−13


Rps27
−0.22528728
13.41431811
64.64008117
8.99077E−16
6.05604E−13


Eno1
0.56244217
9.973825903
64.44188359
9.94221E−16
6.42903E−13


Hspd1
−0.744360435
9.701312261
61.89149549
3.62914E−15
2.25648E−12


Gm9843
0.399626408
10.54065217
61.2458297
5.03752E−15
3.01617E−12


Gm8730
0.384178175
10.58492916
59.65981313
1.12756E−14
6.51003E−12


Lgals1
0.584476207
11.42883276
59.05998416
1.52938E−14
 8.5255E−12


Gm10263
0.879988604
9.287197141
58.8792496
1.67651E−14
9.03415E−12


S100a6
0.619339818
11.111098
55.07558334
1.15983E−13
6.04832E−11


mt-Nd1
−0.314291725
11.43254364
52.46700175
4.37539E−13
2.21039E−10


Actn1
−0.958369048
9.243454407
51.82637721
6.06318E−13
2.97022E−10


mt-Nd2
−0.461351834
10.07866988
51.42464038
7.43989E−13
3.53745E−10


Cacybp
−0.705432725
9.458629507
51.23131446
8.20985E−13
3.68668E−10


Arhgdib
0.320566828
10.84726184
51.2464166
8.14693E−13
3.68668E−10


Maff
−0.931067074
9.283544725
50.87231383
9.85743E−13
 4.3069E−10


H1f0
1.005362161
9.473187573
47.65841621
 5.0734E−12
2.15833E−09


Rpl7a-ps5
0.757646926
9.352518925
46.86769121
7.59444E−12
 3.1156E−09


Gm10036
0.598995698
9.558547095
46.83834526
7.70902E−12
 3.1156E−09


Fas
−0.830210368
9.383693055
46.49515393
9.18453E−12
3.62139E−09


Bcl2
−0.898899663
9.49783969
44.78359536
2.20059E−11
8.47016E−09


Vim
0.568575859
10.37415144
43.88211639
3.48761E−11
1.31118E−08


Chchd2
−0.336926527
10.38091917
43.82067836
3.59883E−11
1.32224E−08


Gm6133
0.42291287
9.939660004
43.76172027
3.70889E−11
 1.3324E−08


Rpl10-ps3
0.525088242
9.670588182
42.35366951
7.61733E−11
2.67699E−08


mt-Cytb
−0.260378871
11.31880065
42.11921612
8.58752E−11
2.95374E−08


Gm10073
0.499465706
9.768923335
41.91880226
9.51433E−11
3.20435E−08


Eif1
−0.204726216
11.87265834
41.54646968
1.15102E−10
3.79743E−08


Ass1
0.620830747
9.695025993
41.49478969
1.18185E−10
3.82117E−08


Pfn1
0.254506795
12.11137348
41.2735189
 1.3235E−10
4.19523E−08


Fus
−0.445839928
9.904223746
40.96169319
1.55242E−10
4.82625E−08


mt-Nd4
−0.299211404
10.74171325
40.51332524
 1.9528E−10
5.89125E−08


Rpl13-ps3
0.498225143
9.711443418
40.49829211
1.96788E−10
5.89125E−08


Rbm3
0.313163413
10.72414562
40.41601225
2.05252E−10
6.03292E−08


Ltb4r1
0.861214833
9.337334137
39.74620311
2.89202E−10
8.33608E−08


Tmem176b
0.651358918
9.889767452
39.71457834
2.93923E−10
8.33608E−08


Gm9844
0.538387087
9.610551657
39.1486532
3.92734E−10
1.09464E−07


S100a4
0.676788049
10.14521787
39.10503468
4.01607E−10
 1.1004E−07


Furin
0.614555215
10.39788225
38.37338333
5.84238E−10
1.57413E−07
















TABLE 3Q







LPL-4 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hsp90ab1
−1.377781478
11.67647139
543.8892971
 2.6874E−120
 4.3444E−116


Dnajb1
−2.622537269
11.47483313
463.2873417
 9.2579E−103
 7.4832E−99


Hspa8
−1.036886848
12.90024104
448.3195067
 1.6743E−99
9.02236E−96


Hsp90aa1
−1.69852051
11.40941515
442.452405
3.16746E−98
1.28013E−94


Hspa1a
−2.91446732
12.86010883
434.4143608
1.77875E−96
5.75104E−93


Ubb
−0.8105054
13.50178123
308.2413372
5.27644E−69
1.42165E−65


Dnaja1
−1.298882131
11.23915542
290.2673755
4.34808E−65
1.00416E−61


Hspa1b
−1.994309739
9.932282948
251.5650814
 1.1837E−56
2.39196E−53


Hspe1
−1.211796243
10.68337716
228.4069201
 1.3267E−51
2.38304E−48


Hsph1
−1.515688729
9.910103763
186.9056674
1.50586E−42
2.43438E−39


Malat1
−0.537789313
15.00626926
185.1910359
3.56528E−42
5.23966E−39


Chchd2
−0.665375364
10.5846311
154.6624546
1.65943E−35
2.23553E−32


Cd160
1.665261637
9.620048846
144.2761916
3.09176E−33
3.84473E−30


Phlda1
−1.715829384
9.936081564
132.4571128
1.18847E−30
1.37234E−27


Zfp36l2
1.020511228
10.14841765
130.7330703
2.83244E−30
3.05262E−27


Hspd1
−1.116030522
10.09787646
130.1171232
3.86298E−30
3.90306E−27


Gm8730
0.618593594
10.48391426
128.1570741
1.03702E−29
9.86148E−27


Gm9843
0.551372502
10.68584472
121.7644479
2.59938E−28
2.33453E−25


Itgae
1.320358
9.521589264
120.7193127
 4.4021E−28
3.74549E−25


Jund
−0.618823521
12.17587894
118.5549329
1.31073E−27
1.05947E−24


Ccl5
1.166637714
13.51206478
116.9541133
2.93787E−27
 2.2616E−24


Ifrd1
−0.930802696
10.22453595
115.1395806
7.33487E−27
5.38979E−24


Rpl27-ps3
0.70516159
10.03539112
113.640381
 1.5622E−26
1.09803E−23


Rpl35
0.424975548
11.14942572
104.8025375
1.34934E−24
9.08896E−22


Rpl23a-ps3
0.445117614
10.91295157
102.8250721
3.66087E−24
2.36726E−21


Cacybp
−0.880317879
9.788879867
98.96384198
2.57154E−23
1.59891E−20


Gzma
1.764487784
10.77239663
96.82803577
7.56178E−23
4.52754E−20


Rbm3
0.492723959
10.60453397
95.7412032
1.30927E−22
7.55916E−20


Cdkn1a
−1.206995923
9.907033741
95.52859803
 1.4577E−22
8.12594E−20


Fosb
−1.066099038
9.880605281
90.88771259
1.52061E−21
8.19406E−19


Rpl9-ps6
0.616227778
10.05860333
90.30945314
2.03677E−21
1.06214E−18


Ubc
−0.604139188
11.71014404
87.02480623
1.07169E−20
5.41402E−18


Odc1
−0.946502247
10.10880077
85.58700716
2.21728E−20
 1.0862E−17


Tsc22d3
0.824896603
10.1820943
79.58469358
4.61991E−19
2.19663E−16


Gm11808
0.505052668
10.40238007
79.36117782
5.17327E−19
2.38946E−16


Wdr89
0.474528645
10.61488511
75.52093649
3.61553E−18
1.62357E−15


Rpl6l
0.488489759
10.34341037
74.33251242
6.60074E−18
2.88399E−15


Atf3
−1.301093577
9.677121904
73.33073331
1.09647E−17
4.66462E−15


Bag3
−1.266132157
9.521354891
71.1109823
3.37685E−17
1.39975E−14


Cd7
1.383948283
9.71052912
66.63099706
3.27397E−16
1.32318E−13


Ubald2
−0.606943142
10.60239164
66.41228036
3.65816E−16
1.44239E−13


Gm10073
0.60015302
9.897815633
65.33692218
6.31275E−16
2.42981E−13


Dnaja4
−1.047867988
9.592869946
64.97318745
7.59241E−16
2.85439E−13


Rps27rt
0.349506577
11.36556647
63.84509364
1.34597E−15
4.94522E−13


Lmna
−1.039644505
9.877771656
63.70335194
1.44638E−15
5.19605E−13


Eif3f
0.348188622
10.67657857
59.9250672
9.85384E−15
3.46298E−12


Gm6133
0.493613949
10.06524373
59.86826662
1.01424E−14
3.48854E−12


Mat2a
−0.836955253
9.660876437
59.67147505
1.12089E−14
3.77508E−12


Gm9493
0.435772602
10.45868098
59.06053171
1.52895E−14
 5.0443E−12


Tbc1d10c
0.639902903
9.791392088
58.49880807
2.03414E−14
6.57679E−12


Rps18-ps3
0.669636452
9.686630364
58.08106981
2.51535E−14
7.97317E−12


Rpl32
0.21253747
12.37847718
57.65394918
3.12535E−14
9.71623E−12


Gm2000
0.618749327
9.800115886
57.56436456
3.27098E−14
9.97712E−12


H2-D1
−0.216020929
12.2809488
55.65589398
8.63337E−14
2.58458E−11


Rpl3
0.212911971
12.08878792
55.29303986
1.03836E−13
3.05201E−11


Rpl13-ps3
0.557976851
9.854426518
54.57484183
1.49639E−13
4.30711E−11


B2m
−0.176603891
12.90330204
54.54582092
1.51865E−13
4.30711E−11


Rpl13a
0.170081845
13.15924144
53.72717786
2.30355E−13
6.42054E−11


Gm10036
0.640849878
9.721300594
53.68577585
 2.3526E−13
6.44613E−11


Rgs1
0.534698556
11.99808529
53.54098127
2.53254E−13
6.82352E−11


Gm10076
0.596717543
9.779957709
53.44108257
2.66466E−13
7.06178E−11


Gm10263
0.780604259
9.452513074
53.10791718
3.15717E−13
8.23208E−11


Lcp1
0.396498657
10.52059347
52.01643536
 5.5038E−13
1.41229E−10


Hist1h1c
0.957764201
9.701111152
51.90723574
5.81856E−13
1.46973E−10


Ctla4
−0.615817979
10.22784566
51.72555071
6.38267E−13
1.58742E−10


Coq10b
−0.664020777
9.717601992
49.10934376
2.42084E−12
 5.9296E−10


Crem
−0.709446614
9.842415377
48.75660354
2.89781E−12
6.99195E−10


Klf4
−1.112826275
9.519315737
46.8956894
7.48672E−12
1.77986E−09


mt-Nd1
−0.32338555
10.96639023
46.25136642
1.04014E−11
2.43694E−09


Ccdc117
−0.779915449
9.506449603
44.82943889
2.14966E−11
4.96449E−09


Rpl36-ps3
0.580626548
9.694858712
44.65567952
2.34915E−11
5.34879E−09


Rgcc
−1.007094973
9.901750839
44.37211507
2.71527E−11
6.09654E−09


Rpl10-ps3
0.562706811
9.75031317
44.05381348
3.19471E−11
7.07475E−09


Rpl29
0.254087583
11.17785599
43.66475261
3.89728E−11
8.51398E−09


1810041H14Rik
0.786738522
9.425523912
42.88865415
5.79457E−11
 1.249E−08


Eif2s3y
0.700036231
9.470445177
41.39992401
1.24062E−10
 2.6305E−08


Rgs10
0.559350389
9.800303566
41.38062899
1.25293E−10
 2.6305E−08


Cxcr6
0.490736441
10.46808826
41.26892433
1.32661E−10
2.74949E−08


Cxcl10
−1.054785352
9.738782804
41.18958781
1.38157E−10
2.82714E−08


Hspa5
−0.366763461
10.83492414
39.82661265
2.77538E−10
5.60834E−08


Apobec3
0.575215862
9.721277042
39.53476829
 3.2227E−10
6.43188E−08


Slfn2
0.468248293
10.13448256
39.34340969
3.55451E−10
7.00758E−08


Dedd2
−0.668986564
9.545498301
38.99006944
4.25967E−10
 8.2966E−08


Fth1
−0.247812637
11.54524749
38.79281379
 4.7126E−10
 9.0695E−08


Ptprcap
0.436049079
10.09758212
38.75789964
4.79765E−10
9.12456E−08


H2-K1
−0.215473813
11.62297555
38.21117955
6.34876E−10
1.19342E−07
















TABLE 3R







LPL-5 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Ubb
−0.667747794
13.05670984
265.7156028
9.74321E−60
1.57509E−55


Hsp90aa1
−1.390021311
10.77771699
236.9250263
1.84164E−53
 1.4886E−49


Hsp90ab1
−0.877553386
11.22553208
214.086737
1.76318E−48
9.50116E−45


Dnajb1
−2.034720283
10.05660873
212.4063054
4.10102E−48
1.65743E−44


Gm8730
0.851933726
10.24578436
206.9946236
6.21693E−47
2.01006E−43


Hspa1a
−3.201994123
10.61491682
204.4379641
2.24606E−46
6.05162E−43


Hspa8
−0.790773697
12.33316572
185.8795749
2.52221E−42
5.82487E−39


Dnaja1
−1.115058706
10.84366253
184.3752183
5.37272E−42
1.08569E−38


Rpl35
0.583624905
10.97458616
157.7700054
3.47453E−36
6.24103E−33


Hspe1
−1.122714984
10.26957624
131.5655283
1.86225E−30
3.01051E−27


Malat1
−0.529186268
14.79984657
126.899325
1.95441E−29
2.87227E−26


Gm9843
0.631738591
10.43647932
122.2523516
2.03268E−28
2.73835E−25


Rpl9-ps6
0.809660987
9.759551999
106.7457447
5.06108E−25
6.29365E−22


Rpl6l
0.633388877
10.12675606
100.075177
1.46721E−23
1.69421E−20


Gm9493
0.571951632
10.23323023
85.51740481
2.29671E−20
2.47524E−17


Rpl27-ps3
0.729614246
9.781981089
84.53046761
3.78339E−20
3.82265E−17


Rpl23a-ps3
0.473928723
10.60530193
83.90585402
5.18906E−20
 4.9345E−17


Hsph1
−1.177413258
9.464086511
74.92950145
4.87826E−18
4.38122E−15


Gm11808
0.601111889
10.07554584
72.80397873
1.43188E−17
 1.2183E−14


Gm2000
0.802070822
9.596573833
70.33377085
5.00731E−17
4.04741E−14


Hspd1
−0.890332867
9.826990882
67.99041097
1.64293E−16
1.26474E−13


Rpl32
0.263487778
12.19599702
64.29385621
1.07179E−15
7.87574E−13


Satb1
0.819131319
9.737592769
63.08567762
1.97908E−15
1.39103E−12


Rplp0
0.258058129
12.11340747
60.06163932
9.19327E−15
6.19244E−12


Ddx5
−0.338656579
11.43119638
58.94745616
1.61939E−14
1.04716E−11


Rpl24
0.266833972
11.64961557
58.38416317
 2.1562E−14
1.34066E−11


Fosb
−1.074649073
9.490138093
57.46868713
3.43403E−14
2.05609E−11


Rps12-ps3
0.587568991
9.824084704
55.69125561
8.47946E−14
4.89568E−11


Rbm3
0.389737471
10.63055567
55.06584393
1.16559E−13
6.49756E−11


Rpl10-ps3
0.711450504
9.547172531
54.99892102
1.20596E−13
6.49852E−11


Gm10073
0.644880368
9.623688778
52.69248962
 3.9008E−13
 2.0342E−10


Jund
−0.397700454
12.17425697
52.22636503
4.94576E−13
2.49854E−10


Prr7
−0.639601864
10.04331603
52.06546063
5.36809E−13
2.62971E−10


Itgae
1.123657217
9.319838841
51.56974696
6.90982E−13
3.28542E−10


Eef2
0.29305387
11.17127454
50.2993106
1.31996E−12
6.05646E−10


Hspa1b
−1.112341319
9.284322097
50.25702435
1.34871E−12
6.05646E−10


Wdr89
0.439221506
10.3352908
49.53293438
1.95069E−12
8.52295E−10


Gm6133
0.523936873
9.843311357
47.94692977
4.37913E−12
1.86298E−09


Gm10263
0.852181403
9.264949602
47.75742561
4.82354E−12
1.99942E−09


Chchd2
−0.36297706
10.50692552
47.31500857
6.04476E−12
2.44299E−09


Cd160
1.185837125
9.397166234
45.0097638
1.96054E−11
7.73028E−09


AY036118
0.801085044
9.298633911
44.02645037
3.23968E−11
1.24697E−08


Rpl29
0.291653565
10.96053826
43.6349489
3.95709E−11
1.48768E−08


Rpsa
0.268788369
11.41599406
43.26500152
4.78058E−11
1.75643E−08


Rps18-ps3
0.697609539
9.437736028
42.05344044
8.88128E−11
3.19055E−08


Rpl13-ps3
0.566952616
9.614334098
40.26690495
 2.2153E−10
7.78534E−08


Gm10076
0.592960428
9.574070265
39.75217493
2.88319E−10
9.91696E−08


Uba52
0.418146824
10.13486888
39.60024883
3.11644E−10
1.04959E−07


Rps27rt
0.320302058
10.99650998
39.32759785
3.58341E−10
1.18223E−07


Rps26-ps1
0.70530421
9.384930749
38.94602666
4.35686E−10
1.38104E−07


Rpl15
0.323801677
10.62581306
38.96325972
4.31857E−10
1.38104E−07


mt-Co1
0.23982267
12.12069306
38.69051414
4.96617E−10
 1.5439E−07


Rps11
0.186996755
12.06257295
37.34887398
9.87779E−10
3.01291E−07
















TABLE 3S







LPL-6 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Rpl27-ps3
1.000892179
9.677930454
232.0702931
2.10792E−52
3.40767E−48


Hsp90aa1
−1.210351983
10.47955889
202.9526524
4.73718E−46
3.60335E−42


Gm8730
0.756647108
10.38713922
202.2665877
6.68691E−46
3.60335E−42


Hspa1a
−3.243435226
9.933983278
198.1462725
 5.3011E−45
2.14244E−41


Ubb
−0.574565023
12.67292372
180.0597604
4.70297E−41
1.52056E−37


Dnajb1
−1.702734682
9.424438564
179.4808902
6.29164E−41
1.69518E−37


Wdr89
0.640598855
10.29329469
176.5192226
2.78904E−40
 6.4411E−37


Gm9843
0.665821745
10.37262602
158.7124543
2.16256E−36
  4.37E−33


Rpl9-ps6
0.849063028
9.614175562
142.8508334
6.33644E−33
1.13817E−29


Rpl6l
0.667371325
10.05028615
139.6822252
3.12395E−32
5.05018E−29


Dnaja1
−0.936847633
10.37482583
137.9055231
7.64278E−32
1.12321E−28


Rpl35
0.474243562
11.1600212
133.1346392
8.44835E−31
1.13813E−27


Gm2000
0.900801116
9.411532299
131.3566669
2.06886E−30
 2.5727E−27


Hsp90ab1
−0.638919781
11.00174478
119.0868662
1.00242E−27
1.15751E−24


Malat1
−0.541217017
14.12310599
110.177485
8.95985E−26
9.65633E−23


Rpl23a-ps3
0.532413845
10.61742407
109.6556439
1.16582E−25
1.17791E−22


Gm11808
0.647313204
9.982489755
106.0637432
7.14011E−25
6.78983E−22


Rpl10-ps3
0.93087986
9.304624268
102.2688908
4.84745E−24
4.35355E−21


Gm9493
0.557945752
10.19580436
100.6832828
1.07933E−23
9.18337E−21


Gm10073
0.803166764
9.440142111
94.98063058
1.92257E−22
1.55402E−19


Hspe1
−0.787573629
10.02870964
81.44687154
1.80037E−19
1.38594E−16


Rps18-ps3
0.874430698
9.141091849
81.14090097
2.10185E−19
1.54447E−16


Gm6133
0.609584976
9.693751155
79.56643779
4.66279E−19
3.27734E−16


Gm10076
0.78780773
9.320701955
76.68494977
2.00526E−18
1.35071E−15


Gm10036
0.810805014
9.213962076
74.61076882
5.73296E−18
3.70716E−15


Rpl7a-ps5
0.908100854
9.003418976
71.62566534
2.60151E−17
1.61754E−14


Gm9844
0.795707711
9.253843776
70.30676693
5.07633E−17
 3.0394E−14


Rpl36-ps3
0.826670812
9.144263881
68.68823221
1.15327E−16
6.65849E−14


AY036118
1.000399497
8.8526315
58.45878653
2.07594E−14
1.11866E−11


Lrrc58
0.828432135
9.10202243
58.49410236
2.03901E−14
1.11866E−11


Gm10250
0.841380514
8.998216795
56.86543552
4.66677E−14
2.43364E−11


Rpl15
0.321012912
10.70053263
55.03639559
1.18318E−13
 5.9773E−11


Lmna
−1.033273941
9.199192092
53.22605295
 2.9729E−13
1.45636E−10


Rps12-ps3
0.511506106
9.706346193
53.00742095
3.32291E−13
1.57994E−10


Uba52
0.452683276
10.01489978
51.85402704
5.97839E−13
2.76133E−10


Rpl13-ps3
0.621729495
9.346679461
48.71691561
2.95705E−12
1.32788E−09


Rpl29
0.258694868
11.28929882
46.03406713
1.16214E−11
5.07763E−09


Jund
−0.427242629
11.18646997
44.56718827
2.45776E−11
1.04558E−08


Junb
−0.438372159
11.38076207
43.97788044
3.32108E−11
1.37663E−08


Gm42418
0.725684143
8.981321303
42.89367766
5.77971E−11
2.33587E−08


Rps27rt
0.353162983
10.92491058
39.91812858
2.64834E−10
1.04422E−07


Chchd2
−0.311772562
10.31406676
39.44480899
3.37464E−10
1.29891E−07


Rbm3
0.32207408
10.71438018
38.81533478
4.65854E−10
1.71628E−07


Rps26-ps1
0.718056862
9.019003364
38.80999724
4.67129E−10
1.71628E−07


Ddx5
−0.278755543
10.97294105
37.85862663
7.60613E−10
2.73246E−07


Cdkn1a
−0.79324254
9.191708702
37.79083713
7.87508E−10
2.76758E−07
















TABLE 3T







LPL-7 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Gm9843
0.679076895
10.68936848
85.64667834
2.15137E−20
2.46863E−16


Wdr89
0.741913181
10.65124957
84.95385849
 3.0541E−20
2.46863E−16


Hspa8
−0.660530188
12.56155791
81.61422367
1.65419E−19
 8.9139E−16


Dnajb1
−1.649042898
10.57015052
80.42659398
3.01707E−19
1.12709E−15


Hsp90ab1
−0.784877451
11.53679216
80.14113929
3.48598E−19
1.12709E−15


Rpl27-ps3
0.886089505
10.09707719
79.75671931
4.23468E−19
1.14096E−15


Ubb
−0.498645077
13.14137294
79.18808927
5.64695E−19
1.30412E−15


Hsp90aa1
−1.001997476
11.1674382
72.06971016
2.07728E−17
4.19766E−14


Rps27rt
0.538171151
11.50969557
70.70374503
4.15104E−17
7.45619E−14


Dnaja1
−0.843376752
11.10860762
62.44563998
2.73902E−15
4.42789E−12


Rpl35
0.489450987
11.11111461
58.91362524
1.64747E−14
2.42119E−11


Malat1
−0.461372669
14.92882516
58.52275262
2.00954E−14
2.70718E−11


Gm8730
0.632965858
10.46529795
56.55413113
5.46724E−14
6.79872E−11


Rpl9-ps6
0.735601623
10.06584632
49.89813247
1.61939E−12
1.86993E−09


Rps18-ps3
0.949329603
9.757081417
49.11636357
2.41219E−12
 2.5997E−09


Rpl23a-ps3
0.516177035
10.81532166
45.89587466
1.24708E−11
1.26002E−08


Gm11808
0.599716998
10.3153324
44.88415961
2.09042E−11
1.98787E−08


Rpl6l
0.570669176
10.35956478
44.21034092
2.94919E−11
 2.6487E−08


Hspe1
−0.857543595
10.72567371
43.97285148
3.32962E−11
2.83298E−08


Zfp36l2
0.848268603
10.19106218
43.66380014
3.89918E−11
3.15171E−08


Rps12-ps3
0.693919785
10.07841838
42.55899212
6.85823E−11
5.27953E−08


Rpl13a
0.252632783
13.2005704
40.88104103
1.61783E−10
1.18881E−07


Rpl13-ps3
0.768495136
9.869026408
38.6191581
5.15108E−10
3.62054E−07
















TABLE 3U







LPL-8 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hspa1a
−4.46133106
9.487194307
303.1093704
6.92398E−68
1.11933E−63


Hsp90aa1
−1.392806426
10.0823126
226.1411471
4.13928E−51
3.34578E−47


Dnajb1
−1.900971523
8.769887068
179.91552
5.05668E−41
2.72488E−37


Rbm3
0.641674082
11.24281554
156.1928534
 7.6829E−36
3.10504E−32


Gm8730
0.780025906
10.21672865
140.0001899
2.66178E−32
8.60607E−29


Hspa8
−0.674361493
11.79442321
131.7442211
1.70194E−30
4.58559E−27


Hspa1b
−2.527753243
8.164889167
119.0070748
1.04357E−27
2.41004E−24


Malat1
−0.913828296
12.8841938
103.0583966
3.25413E−24
6.48903E−21


Hsp90ab1
−0.711121034
10.61566746
102.851369
 3.6126E−24
6.48903E−21


Ubb
−0.618061035
12.11138082
88.5469168
4.96434E−21
8.02535E−18


Rplp0
0.386720187
12.56982724
80.78667159
2.51448E−19
3.69537E−16


Hsph1
−1.509444326
8.280317907
75.08869481
4.50036E−18
6.06273E−15


Hspe1
−0.879787784
9.328717894
71.0337361
3.51169E−17
4.36692E−14


Ubc
−0.738216636
10.18004219
70.86468308
3.82586E−17
4.41777E−14


Rpl35
0.450528289
11.14097897
68.69089929
1.15171E−16
1.24124E−13


Dnaja1
−0.660080702
9.700853705
57.96742407
2.66495E−14
2.69259E−11


Rpl27-ps3
0.769290147
8.860371085
56.31921573
6.16104E−14
5.85878E−11


Gm2000
0.803158017
8.865313337
51.98860839
5.58236E−13
5.01358E−10


Gm10076
0.792181373
8.938297761
49.98552982
1.54884E−12
1.31782E−09


H2-K1
−0.515701257
10.79228433
47.79738871
4.72621E−12
 3.8202E−09


H2-Q7
−0.62224609
9.790270068
47.25801338
 6.2231E−12
4.79061E−09


Rpl3
0.295505002
11.93101795
45.77011002
1.32977E−11
 9.7714E−09


Gm10073
0.771973453
8.899753731
44.51396459
2.52549E−11
1.77509E−08


Rpl10-ps3
0.794752736
8.799079764
43.51094877
4.21594E−11
2.83979E−08


Rpl13
0.295566129
12.2801827
43.04061266
5.36153E−11
3.46698E−08


Rpl32
0.300115748
12.37635341
42.59945259
6.71782E−11
4.17693E−08


Jund
−0.551080322
10.78767876
42.38224753
7.50683E−11
4.49465E−08


Rpl10a
0.389587396
11.15066686
41.45258432
1.20765E−10
6.73201E−08


Isg15
−1.276987474
8.306648902
41.51123525
1.17195E−10
6.73201E−08


Rps18-ps3
0.999323395
8.484337215
40.88283659
1.61634E−10
8.70994E−08


Fosb
−1.399459966
8.173149877
40.59851305
1.86949E−10
9.74908E−08


Rps18
0.315086971
12.25780987
40.12474383
2.38252E−10
1.17306E−07


Rpl18a
0.239964236
12.26488225
40.11487131
2.39459E−10
1.17306E−07


Rpl18
0.269829889
11.37724478
39.31803433
 3.601E−10
1.71217E−07


Rps4x
0.281160834
11.75181977
39.26100381
3.70773E−10
1.71255E−07
















TABLE 3V







LPL-9 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hspa1a
−3.208006096
10.63021086
97.57359097
5.18914E−23
8.38877E−19


Ubb
−0.760618634
12.38390677
60.1939278
 8.5957E−15
 6.9479E−11


Gzma
2.923731333
12.03426076
56.95387224
4.46155E−14
2.40418E−10


Hspa1b
−2.544460073
9.795567163
53.74015844
2.28838E−13
9.24847E−10


Hsp90aa1
−1.50442418
10.20067248
42.7113425
6.34433E−11
2.05125E−07


Ccr9
2.221991151
9.9641527
40.55436946
 1.9122E−10
5.15212E−07
















TABLE 3W







LPL-10 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Hspa1a
−3.279080597
9.77749525
66.6687553
3.21186E−16
5.19229E−12


Malat1
−0.906756376
13.82786584
48.20036621
3.84816E−12
3.11047E−08


Dnajb1
−1.9736233
9.859710517
47.29375921
6.11065E−12
3.29282E−08


Ubb
−0.62876509
12.23504229
27.75960127
1.37365E−07
0.00055516


Dnaja1
−1.070648437
10.15612377
21.95233617
2.79506E−06
0.009037003
















TABLE 3X







LPL-11 Ctrl vs. KO












GeneSymbol
logFC
logCPM
LR
PValue
FDR















Gm9843
1.152747768
10.86191498
107.7332038
3.07507E−25
4.97117E−21


Rps27rt
0.936042362
11.6006599
98.51241281
3.22994E−23
2.61076E−19


Uba52
1.259153747
10.29857567
89.76924229
2.67623E−21
1.25309E−17


Gm11808
1.174254179
10.36510957
89.13644101
 3.685E−21
1.25309E−17


Rpl6l
1.12148656
10.43521049
89.03662136
3.87571E−21
1.25309E−17


Gm8730
1.178269708
10.48527954
88.52016702
5.03192E−21
1.35577E−17


Rpl23a-ps3
0.97111709
11.05711726
87.23097408
9.65597E−21
2.22998E−17


Rpl9-ps6
1.361164957
10.11088474
85.89170087
1.90065E−20
3.41399E−17


Gm9493
1.04400959
10.54876454
85.92861245
 1.8655E−20
3.41399E−17


Rpl27-ps3
1.236714099
10.05185113
73.33936538
1.09169E−17
1.76482E−14


Gm2000
1.283533859
9.738432617
68.91660374
1.02716E−16
1.50956E−13


Rpl35
0.739766449
11.21870405
65.61762991
5.47468E−16
7.37531E−13


Gm10036
1.489161877
9.448810832
64.09537827
1.18539E−15
1.47408E−12


Wdr89
0.805998267
10.97502014
59.64331287
1.13705E−14
1.31297E−11


Gm10073
1.302016708
9.701129124
56.54648834
5.48853E−14
5.91517E−11


Gm10076
1.506003095
9.391444214
50.19653071
1.39094E−12
1.40537E−09


Rpl15
0.715629478
10.88701252
45.13720707
1.83702E−11
 1.7469E−08


Rpl36-ps3
1.287158449
9.442853364
41.85453352
9.83225E−11
8.83046E−08


Gm6133
0.942044122
9.994215819
40.6518122
1.81918E−10
1.54784E−07
















TABLE 3Y







GWAS














GeneSymbol
LPL-2 logFC
LPL-2 FDR
LPL-9 logFC
LPL-9 FDR
LPL-7 logFC
LPL-7 FDR
GWAS?

















Zfp36l2
0.757
2.01E−14
1.283
6.35E−03
0.848
3.15E−08
TRUE


Tnfsf8
−0.869
1.14E−10
−0.918
4.04E−01
−0.359
9.46E−01
TRUE


Gpr18
0.867
1.82E−10
1.208
8.21E−02
0.102
1.00E+00
TRUE


Ctsw
0.398
1.07E−08
0.231
1.00E+00
0.379
2.95E−01
TRUE


Ccr5
0.704
1.48E−08
0.294
1.00E+00
0.239
7.62E−01
TRUE


Krtcap2
−0.312
3.46E−07
−0.676
5.81E−03
−0.003
1.00E+00
TRUE


Rpl3
0.149
2.99E−06
0.169
9.15E−01
0.195
2.69E−03
TRUE


Crem
−0.459
3.59E−05
−0.286
1.00E+00
−0.580
2.86E−02
TRUE


Cd28
−0.289
5.47E−05
0.156
1.00E+00
0.237
3.59E−01
TRUE


Lsp1
0.201
7.10E−04
−0.014
1.00E+00
0.098
1.00E+00
TRUE


Il7r
0.351
7.68E−04
0.540
8.46E−01
0.910
8.48E−04
TRUE


Irf1
−0.433
1.05E−03
0.143
1.00E+00
−0.190
1.00E+00
TRUE


Itga4
0.408
2.71E−03
0.595
9.15E−01
0.030
1.00E+00
TRUE


Apobr
−0.325
7.72E−03
−0.049
1.00E+00
0.009
1.00E+00
TRUE


Tnfrsf9
−0.127
9.01E−01
−0.515
9.15E−01
−0.836
8.81E−03
TRUE


Ccnd3
−0.283
1.64E−02
−0.302
1.00E+00
0.212
9.60E−01
TRUE


Csf2
−0.426
1.96E−02
−0.124
1.00E+00
0.000
1.00E+00
TRUE


Fermt3
0.314
2.58E−02
0.043
1.00E+00
0.117
1.00E+00
TRUE


Dpm3
−0.287
3.08E−02
0.124
1.00E+00
0.129
1.00E+00
TRUE


Gnb2
0.204
3.37E−02
−0.279
1.00E+00
0.375
7.83E−02
TRUE


Dap
0.340
3.38E−02
0.719
7.71E−01
−0.084
1.00E+00
TRUE


Cd74
−0.489
3.79E−02
−0.385
1.00E+00
−0.539
3.37E−01
TRUE


Fos
−0.534
4.09E−02
−0.878
8.71E−01
−0.802
3.89E−02
TRUE


St13
−0.293
4.51E−02
0.536
9.15E−01
−0.079
1.00E+00
TRUE


Fam213b
−0.144
5.40E−02
0.000
1.00E+00
0.051
1.00E+00
TRUE


Cd6
0.228
5.53E−02
−0.222
1.00E+00
−0.067
1.00E+00
TRUE


Dnajb4
−0.343
6.08E−02
−0.126
1.00E+00
−0.059
1.00E+00
TRUE


Ptprc
0.165
6.25E−02
0.265
1.00E+00
−0.053
1.00E+00
TRUE


Socs1
−0.338
6.39E−02
−0.358
1.00E+00
−0.233
9.77E−01
TRUE


Ncf4
0.292
6.51E−02
−0.207
1.00E+00
0.381
5.41E−01
TRUE


Rps14
−0.004
1.00E+00
−0.003
1.00E+00
0.138
6.58E−02
TRUE


Vmp1
0.273
6.92E−02
0.818
6.99E−01
0.202
9.46E−01
TRUE


Cd226
0.350
7.33E−02
0.189
1.00E+00
0.086
1.00E+00
TRUE


Hdac7
0.285
7.88E−02
0.174
1.00E+00
0.124
1.00E+00
TRUE


Pim3
−0.293
2.16E−01
−0.032
1.00E+00
−0.652
8.14E−02
TRUE


Traf3ip2
0.286
9.01E−02
0.462
7.75E−01
−0.003
1.00E+00
TRUE


Ets1
0.162
9.20E−02
−0.032
1.00E+00
0.108
9.68E−01
TRUE


Lpxn
0.211
9.69E−02
0.245
1.00E+00
0.258
7.35E−01
TRUE


Dnajb1
−2.545
 7.19E−117
−1.766
3.18E−06
−1.649
1.13E−15
FALSE


Ubb
−0.719
 6.98E−110
−0.761
6.95E−11
−0.499
1.30E−15
FALSE


Hspa1a
−4.265
 1.73E−105
−3.208
8.39E−19
−1.733
5.26E−06
FALSE


Hsp90aa1
−1.539
9.57E−97
−1.504
2.05E−07
−1.002
4.20E−14
FALSE


Hsp90ab1
−1.045
1.54E−91
−0.600
2.04E−02
−0.785
1.13E−15
FALSE


Malat1
−0.788
3.06E−83
−0.680
1.62E−06
−0.461
2.71E−11
FALSE


Dnaja1
−1.161
4.16E−78
−0.342
9.15E−01
−0.843
4.43E−12
FALSE


Lmna
−1.945
1.16E−69
−1.519
8.60E−04
−0.532
2.38E−01
FALSE


Hspa8
−0.679
3.81E−68
0.219
9.15E−01
−0.661
8.91E−16
FALSE


Gm8730
0.782
1.16E−56
0.971
5.54E−06
0.633
6.80E−11
FALSE


Rpl27-ps3
1.053
8.09E−50
0.805
2.26E−01
0.886
1.14E−15
FALSE


Rgcc
−1.711
1.89E−45
−0.813
6.43E−01
−0.460
7.35E−01
FALSE


Jund
−0.676
6.22E−42
−0.962
8.04E−06
−0.377
2.69E−03
FALSE


Rpl35
0.509
2.46E−40
0.492
1.94E−02
0.489
2.42E−11
FALSE


Gm10076
1.043
8.24E−36
0.361
1.00E+00
0.608
6.02E−04
FALSE


Hspe1
−0.936
2.25E−31
−0.529
7.11E−01
−0.858
2.83E−08
FALSE


Rbm3
0.522
1.00E−30
0.689
2.20E−03
0.154
7.29E−01
FALSE


Hspa1b
−1.577
8.12E−29
−2.544
9.25E−10
−1.026
1.09E−03
FALSE


Rpl6I
0.619
1.52E−27
0.448
7.04E−01
0.571
2.65E−08
FALSE


Rpl9-ps6
0.729
4.55E−26
0.328
1.00E+00
0.736
1.87E−09
FALSE


Plac8
1.004
1.74E−25
0.891
8.71E−02
0.027
1.00E+00
FALSE


Rpl10-ps3
0.892
5.90E−25
0.219
1.00E+00
0.590
2.76E−03
FALSE


Rplp0
0.288
2.35E−24
0.335
8.03E−02
0.162
5.42E−02
FALSE


Gm2000
0.840
1.60E−23
0.555
8.76E−01
0.761
2.50E−06
FALSE


AY036118
1.145
3.92E−23
−0.264
1.00E+00
0.648
9.48E−03
FALSE


Rps11
0.296
3.92E−23
0.236
5.32E−01
0.243
1.39E−04
FALSE


Gm9843
0.527
2.80E−22
0.157
1.00E+00
0.679
2.47E−16
FALSE


Crip1
−0.543
9.93E−22
−0.131
1.00E+00
−0.778
1.45E−06
FALSE


Atf3
−1.251
9.16E−21
−0.652
6.82E−01
−0.067
1.00E+00
FALSE


Fosb
−1.291
1.68E−20
−0.525
4.01E−01
−0.170
1.00E+00
FALSE


Ccl5
1.130
1.94E−20
1.434
3.77E−04
−0.184
7.29E−01
FALSE


H2-D1
−0.246
2.77E−18
−0.296
1.15E−01
−0.151
8.69E−02
FALSE


Gzma
1.725
5.05E−18
2.924
2.40E−10
1.884
2.33E−06
FALSE


Capg
−0.679
5.65E−18
−0.770
1.12E−01
0.058
1.00E+00
FALSE


Hsph1
−1.043
8.62E−18
−0.588
9.15E−01
−0.608
5.42E−02
FALSE


AW112010
0.445
9.11E−18
0.011
1.00E+00
−0.335
2.06E−02
FALSE


Rps12-ps3
0.611
3.47E−17
0.168
1.00E+00
0.694
5.28E−08
FALSE


Rpl23a-ps3
0.404
5.51E−17
0.279
9.15E−01
0.516
1.26E−08
FALSE


Cd160
1.385
5.51E−17
1.394
4.54E−04
0.356
7.73E−01
FALSE


Fth1
−0.335
7.81E−17
−0.305
6.82E−01
−0.210
1.13E−01
FALSE


Wdr89
0.370
1.58E−10
0.105
1.00E+00
0.742
2.47E−16
FALSE


Rpl32
0.227
4.23E−16
0.259
2.34E−01
0.200
5.19E−04
FALSE


Gm10073
0.680
5.48E−16
0.067
1.00E+00
0.567
5.13E−04
FALSE


Gimap4
0.436
9.14E−16
0.030
1.00E+00
0.301
1.42E−02
FALSE


Odc1
−0.776
1.42E−15
−0.233
1.00E+00
−0.406
1.41E−01
FALSE


Klf4
−0.945
1.52E−15
0.000
1.00E+00
−0.373
9.46E−01
FALSE


Gm9493
0.455
2.68E−15
0.186
1.00E+00
0.476
8.63E−06
FALSE


Epsti1
0.517
6.73E−15
0.125
1.00E+00
0.223
8.69E−01
FALSE


Mat2a
−0.791
7.03E−15
0.545
9.50E−01
−0.246
8.90E−01
FALSE


Chchd2
−0.377
7.45E−15
−0.264
9.44E−01
−0.256
1.72E−01
FALSE


Eef2
0.257
6.16E−14
0.224
9.15E−01
0.279
5.69E−04
FALSE


Hspd1
−0.730
6.37E−14
−0.022
1.00E+00
−0.736
1.21E−04
FALSE


Tnfsf11
−1.017
6.37E−14
−0.485
1.00E+00
−0.517
2.38E−01
FALSE


Rps27rt
0.153
3.85E−02
0.017
1.00E+00
0.538
7.46E−14
FALSE


Rpsa
0.270
7.83E−14
0.161
9.96E−01
0.109
7.35E−01
FALSE


Ubc
−0.410
8.17E−14
−0.272
9.31E−01
−0.333
1.87E−02
FALSE


Limd2
0.519
1.01E−13
0.323
9.15E−01
0.021
1.00E+00
FALSE


Ddx5
−0.322
1.29E−13
0.096
1.00E+00
−0.242
1.87E−02
FALSE


Slc25a5
0.364
1.37E−13
0.436
4.18E−01
0.106
1.00E+00
FALSE


Calm2
−0.418
1.37E−13
−0.269
9.43E−01
−0.250
2.68E−01
FALSE


Coro1a
0.346
1.79E−13
−0.211
9.15E−01
0.026
1.00E+00
FALSE


Rpl7a-ps5
0.793
2.08E−13
0.495
9.82E−01
0.855
2.71E−05
FALSE


Kdm6b
−0.839
2.14E−13
−0.042
1.00E+00
−0.228
9.94E−01
FALSE


Cd7
1.097
2.81E−13
1.933
2.19E−05
−0.262
1.00E+00
FALSE


mt-Co1
0.235
1.31E−12
0.240
7.06E−01
0.134
5.30E−01
FALSE


Gm11808
0.461
2.96E−12
−0.153
1.00E+00
0.600
1.99E−08
FALSE


Ptprcap
0.468
3.65E−12
0.222
1.00E+00
−0.099
1.00E+00
FALSE


Rpl29
0.262
6.50E−12
0.377
2.07E−01
0.306
2.80E−04
FALSE


Fam110a
−0.790
7.03E−12
−0.231
1.00E+00
−0.585
1.38E−01
FALSE


Rpl39I
−0.660
1.20E−11
0.063
1.00E+00
−0.011
1.00E+00
FALSE


H2-K1
−0.262
1.91E−11
−0.387
1.01E−01
−0.129
5.03E−01
FALSE


Rpl15
0.305
2.06E−11
0.353
6.35E−01
0.300
5.49E−03
FALSE


Rpl13-ps3
0.582
2.23E−11
0.125
1.00E+00
0.768
3.62E−07
FALSE


Rps6
0.188
3.84E−11
0.218
6.23E−01
0.136
1.36E−01
FALSE


Klrk1
−0.696
9.06E−11
−1.397
1.40E−01
−0.182
1.00E+00
FALSE


Lrrc58
0.664
1.14E−10
0.153
1.00E+00
0.342
5.86E−01
FALSE


mt-Nd1
−0.317
1.96E−10
−0.384
4.52E−01
−0.093
9.89E−01
FALSE


Cdkn1a
−0.799
2.00E−10
−0.160
1.00E+00
−1.077
2.18E−05
FALSE


Pycard
0.552
3.15E−10
0.411
9.15E−01
0.196
9.47E−01
FALSE


Rpl24
0.196
6.92E−10
0.424
5.06E−03
0.103
7.35E−01
FALSE


Rps26-ps1
0.687
9.14E−10
0.339
1.00E+00
0.587
1.68E−02
FALSE


Lgals1
−0.300
1.31E−09
−0.372
8.36E−01
−0.200
8.31E−01
FALSE


Rpl18
0.193
1.53E−09
0.239
5.56E−01
0.107
6.97E−01
FALSE


Tuba1b
−0.597
1.83E−09
−0.023
1.00E+00
−0.159
1.00E+00
FALSE


Anxa1
−0.789
2.26E−09
−0.508
1.00E+00
−0.071
1.00E+00
FALSE


Eif3f
0.262
2.26E−09
0.628
1.66E−03
0.129
7.72E−01
FALSE


Rps18-ps3
0.518
1.84E−06
−0.035
1.00E+00
0.949
2.60E−09
FALSE


Arhgdib
0.265
2.99E−09
0.107
1.00E+00
0.070
1.00E+00
FALSE


S100a11
−0.309
3.72E−09
−0.571
2.09E−02
−0.140
9.38E−01
FALSE


Gm10250
0.669
4.08E−09
0.479
9.50E−01
0.594
2.22E−02
FALSE


Actg1
0.252
5.73E−09
−0.085
1.00E+00
−0.255
4.14E−02
FALSE


Rgs10
0.576
7.56E−09
0.509
8.47E−01
0.223
1.00E+00
FALSE


Cox7a2l
0.344
9.72E−09
0.562
2.23E−01
0.225
5.06E−01
FALSE


Ifrd1
−0.475
1.07E−08
−0.537
9.15E−01
−0.207
9.46E−01
FALSE


B2m
−0.150
1.93E−08
−0.197
5.39E−01
−0.153
8.64E−03
FALSE


Gm10020
0.682
2.04E−08
0.130
1.00E+00
0.394
4.80E−01
FALSE


Hspa5
−0.331
2.08E−08
−0.159
1.00E+00
−0.539
9.48E−07
FALSE


Cd44
−0.531
2.73E−08
−0.394
1.00E+00
0.199
9.77E−01
FALSE


Id2
−0.415
4.68E−08
−0.270
9.15E−01
−0.485
1.10E−02
FALSE


Shisa5
0.242
5.38E−08
0.220
9.15E−01
0.160
6.70E−01
FALSE


Srsf2
−0.454
5.55E−08
−0.145
1.00E+00
−0.231
7.35E−01
FALSE


Itgae
0.822
6.06E−08
1.438
2.78E−03
0.097
1.00E+00
FALSE


H2-Q7
−0.287
6.64E−08
−0.330
9.15E−01
−0.204
2.09E−01
FALSE


Nmrk1
−0.649
6.64E−08
−0.216
1.00E+00
−0.349
7.39E−01
FALSE


Gm10036
0.543
7.07E−08
0.284
1.00E+00
0.599
3.19E−03
FALSE


Sh3bgrl3
−0.214
7.55E−08
−0.185
9.15E−01
−0.135
8.78E−01
FALSE


Txn1
−0.358
7.94E−08
−0.019
1.00E+00
−0.413
1.07E−02
FALSE


Ly6e
−0.296
1.04E−07
−0.168
1.00E+00
−0.115
1.00E+00
FALSE


Pim1
−0.384
1.17E−07
1.112
7.90E−02
−0.147
1.00E+00
FALSE


Rpl22l1
0.264
1.17E−07
0.667
2.78E−03
0.241
1.31E−01
FALSE


Prr7
−0.462
1.18E−07
−0.038
1.00E+00
−0.359
6.64E−01
FALSE


Rpl13a
0.112
8.57E−04
0.204
5.26E−01
0.253
1.19E−07
FALSE


Ifitm1
−1.211
2.18E−07
−0.065
1.00E+00
−0.042
1.00E+00
FALSE


Sertad1
−0.661
2.31E−07
−0.315
1.00E+00
−0.515
1.82E−01
FALSE


Ybx1
−0.266
2.52E−07
−0.190
1.00E+00
−0.142
8.82E−01
FALSE


Cldnd1
−0.520
2.52E−07
−1.374
2.60E−04
−0.132
1.00E+00
FALSE


Tmem234
0.427
3.46E−07
0.378
9.96E−01
0.107
1.00E+00
FALSE


Bola2
−0.480
3.67E−07
−0.411
9.33E−01
−0.111
1.00E+00
FALSE


Serpinb6b
0.564
3.86E−07
0.097
1.00E+00
0.312
8.36E−01
FALSE


Gm6133
0.402
3.94E−07
0.500
8.71E−01
0.658
3.94E−07
FALSE


Rps3a1
0.171
4.56E−07
0.190
9.15E−01
0.229
1.32E−03
FALSE


Ccr9
0.870
4.80E−06
2.222
5.15E−07
0.716
1.43E−01
FALSE


Cacybp
−0.535
6.43E−07
−0.424
9.96E−01
−0.502
6.32E−02
FALSE


Tspan31
−0.578
7.07E−07
0.251
1.00E+00
−0.153
1.00E+00
FALSE


Gmfg
0.309
7.13E−07
0.002
1.00E+00
0.102
1.00E+00
FALSE


Gm12840
0.587
7.30E−07
0.093
1.00E+00
−0.072
1.00E+00
FALSE


Acp5
0.557
8.50E−07
0.657
7.11E−01
0.205
1.00E+00
FALSE


Cd69
−0.535
8.50E−07
−0.128
1.00E+00
0.325
7.35E−01
FALSE


Rps28
0.023
9.39E−01
0.234
8.27E−01
0.346
8.78E−07
FALSE


Cd82
−0.350
1.39E−06
−0.388
9.15E−01
0.045
1.00E+00
FALSE


Rps19
0.000
1.00E+00
0.135
1.00E+00
0.309
1.69E−06
FALSE


Gm10709
0.581
1.74E−06
0.044
1.00E+00
0.313
6.24E−01
FALSE


Cox4i1
0.210
1.86E−06
0.261
8.76E−01
0.053
1.00E+00
FALSE


Gzmb
0.744
1.86E−06
0.314
1.00E+00
−0.177
1.00E+00
FALSE


Il22
−0.801
2.21E−06
−0.122
1.00E+00
−0.588
3.81E−02
FALSE


Calm1
−0.233
2.38E−06
−0.152
1.00E+00
−0.075
1.00E+00
FALSE


Zc3h12a
−0.459
2.45E−06
−0.204
1.00E+00
0.018
1.00E+00
FALSE


Ier5l
−0.608
2.59E−06
0.058
1.00E+00
−0.481
4.56E−01
FALSE


Fus
−0.382
3.48E−06
−0.622
4.98E−01
−0.343
1.31E−01
FALSE


Klhl6
0.545
3.88E−06
0.258
1.00E+00
0.321
9.46E−01
FALSE


Atp2b1
−0.507
4.14E−06
−0.202
1.00E+00
−0.344
6.89E−01
FALSE


Tbc1d10c
0.448
4.33E−06
0.319
9.28E−01
0.419
1.97E−01
FALSE


H2-Q6
−0.388
4.58E−06
−0.416
9.15E−01
−0.205
8.35E−01
FALSE


Ctla2a
−0.437
5.15E−06
−0.890
2.05E−01
−0.240
8.18E−01
FALSE


Cnn2
0.317
5.69E−06
0.169
1.00E+00
0.139
1.00E+00
FALSE


Selplg
0.263
6.24E−06
0.320
9.15E−01
0.298
2.54E−01
FALSE


Apobec3
0.443
7.33E−06
0.324
1.00E+00
0.170
1.00E+00
FALSE


Crip2
−0.681
8.46E−06
0.156
1.00E+00
−0.339
6.80E−01
FALSE


Bcl2a1a
0.582
8.84E−06
0.326
9.15E−01
−0.028
1.00E+00
FALSE


Hist1h1c
0.371
9.01E−02
−0.174
1.00E+00
1.117
1.07E−05
FALSE


Ifitm2
−0.485
1.18E−05
−0.775
6.49E−01
−0.027
1.00E+00
FALSE


Eif5
−0.383
1.28E−05
−0.338
1.00E+00
−0.187
8.82E−01
FALSE


Ppia
−0.172
1.38E−05
−0.314
2.26E−01
−0.053
1.00E+00
FALSE


Satb1
0.475
1.39E−05
−0.205
1.00E+00
0.324
7.61E−01
FALSE


Rps5
0.028
8.66E−01
0.096
1.00E+00
0.258
1.39E−05
FALSE


Arhgap9
0.469
1.60E−05
0.213
1.00E+00
0.467
9.90E−02
FALSE


Eif2s3y
0.559
1.63E−05
0.762
6.37E−01
0.492
1.87E−01
FALSE


Sub1
−0.158
6.18E−03
−0.302
8.30E−01
−0.380
1.71E−05
FALSE


Tagln2
−0.242
9.64E−04
−0.971
1.72E−05
0.083
1.00E+00
FALSE


Jun
−0.681
1.22E−03
−1.899
2.03E−05
0.149
1.00E+00
FALSE


Rpl6
0.138
2.04E−05
0.169
9.15E−01
0.244
3.06E−04
FALSE


Ptges3
−0.451
2.22E−05
−0.287
1.00E+00
−0.122
1.00E+00
FALSE


Ccdc184
−0.532
2.42E−05
−0.178
9.15E−01
−0.033
1.00E+00
FALSE


Eif4a2
−0.402
2.49E−05
−0.396
9.15E−01
0.040
1.00E+00
FALSE


Rgs2
−0.520
2.53E−05
−0.607
9.15E−01
−0.616
3.81E−02
FALSE


Actn2
0.565
2.95E−05
0.175
1.00E+00
0.383
7.61E−01
FALSE


Jmjd1c
−0.520
3.37E−05
−0.004
1.00E+00
−0.343
7.35E−01
FALSE


Ass1
0.465
3.41E−05
1.193
8.71E−02
−0.025
1.00E+00
FALSE


Rpl21
0.004
1.00E+00
−0.013
1.00E+00
0.280
3.44E−05
FALSE


Tubb4b
−0.507
3.63E−05
0.023
1.00E+00
−0.338
7.29E−01
FALSE


Gramd1a
0.446
3.76E−05
0.451
9.15E−01
0.157
1.00E+00
FALSE


Rps10
0.160
4.16E−05
0.207
9.15E−01
0.232
9.89E−03
FALSE


mt-Cytb
−0.203
4.75E−05
−0.410
2.07E−01
−0.177
6.78E−01
FALSE


Hmgb2
0.286
4.75E−05
−0.076
1.00E+00
0.025
1.00E+00
FALSE


Rpl36-ps3
0.337
7.29E−03
0.158
1.00E+00
0.696
4.88E−05
FALSE


Sp100
0.392
5.36E−05
0.196
1.00E+00
0.355
2.26E−01
FALSE


Vgll4
−0.413
5.44E−05
0.179
1.00E+00
−0.248
8.30E−01
FALSE


Rinl
0.443
6.06E−05
−0.003
1.00E+00
0.315
6.24E−01
FALSE


Gem
−0.687
6.58E−05
−0.047
1.00E+00
−0.785
5.35E−02
FALSE


Stk17b
0.285
6.58E−05
0.217
1.00E+00
−0.007
1.00E+00
FALSE


Unc5cl
0.525
6.58E−05
0.511
9.15E−01
−0.257
8.90E−01
FALSE


Lck
0.228
6.70E−05
0.086
1.00E+00
0.178
5.86E−01
FALSE


Gltscr2
0.253
6.94E−05
0.453
7.11E−01
0.092
1.00E+00
FALSE


Ict1
0.464
6.94E−05
0.038
1.00E+00
0.288
7.39E−01
FALSE


Rpl10a
0.178
7.01E−05
0.338
4.62E−01
0.199
8.74E−02
FALSE


Gpi1
0.328
7.47E−05
0.231
1.00E+00
−0.080
1.00E+00
FALSE


Ltb
0.339
7.56E−05
0.547
7.11E−01
0.241
7.35E−01
FALSE


Tmsb4x
−0.094
5.14E−03
−0.213
2.65E−01
−0.251
8.21E−05
FALSE


Calr
−0.310
8.23E−05
−0.523
7.11E−01
−0.162
9.46E−01
FALSE


Cycs
−0.330
8.59E−05
−0.521
7.60E−01
−0.294
5.16E−01
FALSE


Cpm
−0.558
1.03E−04
0.220
9.96E−01
−0.358
5.63E−01
FALSE


Madd
0.465
1.10E−04
−0.029
1.00E+00
0.173
1.00E+00
FALSE


Anxa2
−0.351
1.11E−04
−0.462
9.15E−01
−0.193
9.77E−01
FALSE


Chn2
0.571
1.11E−04
0.645
8.59E−01
−0.004
1.00E+00
FALSE


Ube2s
−0.304
1.17E−04
−0.578
6.42E−01
−0.208
7.35E−01
FALSE


Atp5g1
−0.344
1.24E−04
−0.227
1.00E+00
−0.045
1.00E+00
FALSE


Tuba4a
−0.504
1.25E−04
−0.415
1.00E+00
−0.435
4.02E−01
FALSE


Gm9844
0.390
1.29E−04
−0.103
1.00E+00
0.307
7.04E−01
FALSE


Uba52
0.273
1.30E−04
−0.143
1.00E+00
0.420
5.40E−04
FALSE


Il21r
−0.350
1.39E−04
0.082
1.00E+00
−0.455
1.09E−01
FALSE


Rpl13
0.043
5.16E−01
0.116
1.00E+00
0.207
1.39E−04
FALSE


Rps24
−0.020
9.33E−01
0.172
9.15E−01
0.242
1.48E−04
FALSE


mt-Nd2
−0.311
1.70E−04
−0.428
9.15E−01
−0.059
1.00E+00
FALSE


Eif4a1
−0.219
1.85E−04
0.476
5.04E−01
−0.152
8.26E−01
FALSE


Ifi27
−0.389
1.90E−04
−0.811
1.03E−01
−0.310
6.69E−01
FALSE


Fau
0.018
9.31E−01
0.069
1.00E+00
0.200
1.92E−04
FALSE


Bcl2l1
−0.508
1.97E−04
0.300
1.00E+00
−0.394
6.06E−01
FALSE


Furin
−0.428
2.07E−04
−0.818
5.16E−01
−0.120
1.00E+00
FALSE


Serf2
−0.177
2.12E−04
−0.289
6.92E−01
−0.081
1.00E+00
FALSE


Gm10263
0.514
2.21E−04
0.320
1.00E+00
0.319
7.35E−01
FALSE


Rasal3
0.453
2.31E−04
0.084
1.00E+00
0.217
9.46E−01
FALSE


Frmd4b
−0.570
2.34E−04
0.034
1.00E+00
−0.402
3.83E−01
FALSE


Tnfrsf4
−0.387
2.59E−04
−0.559
9.15E−01
−0.768
7.68E−04
FALSE


H1f0
0.574
2.68E−04
−0.545
9.15E−01
0.441
7.35E−01
FALSE


Bin2
0.322
2.72E−04
0.800
2.52E−01
0.338
4.67E−01
FALSE


Lztfl1
0.556
2.81E−04
0.477
9.59E−01
0.462
5.49E−01
FALSE


Rpl18a
0.033
6.68E−01
0.190
7.11E−01
0.194
2.95E−04
FALSE


Klrc2
−0.516
3.06E−04
−0.324
1.00E+00
−0.068
1.00E+00
FALSE


Rps23
−0.023
9.01E−01
0.175
8.17E−01
0.192
3.35E−04
FALSE


Irf7
−0.557
3.50E−04
−0.108
1.00E+00
−0.188
1.00E+00
FALSE


Ypel3
0.379
3.68E−04
−0.191
1.00E+00
0.089
1.00E+00
FALSE


Sap30
−0.491
3.79E−04
−0.177
1.00E+00
0.023
1.00E+00
FALSE


Csk
0.418
3.92E−04
0.021
1.00E+00
0.031
1.00E+00
FALSE


Uhrf2
−0.455
4.30E−04
−0.840
5.49E−01
−0.097
1.00E+00
FALSE


Romo1
−0.379
4.47E−04
−0.138
1.00E+00
−0.258
7.62E−01
FALSE


Agr2
−0.159
4.57E−04
0.061
1.00E+00
0.000
1.00E+00
FALSE


Il17a
−0.068
5.25E−01
−1.985
4.62E−04
−0.031
1.00E+00
FALSE


Tnf
−0.450
4.66E−04
0.257
1.00E+00
−0.009
1.00E+00
FALSE


Gimap5
0.365
4.76E−04
0.260
1.00E+00
0.304
4.85E−01
FALSE


Maff
−0.514
5.01E−04
0.000
1.00E+00
0.057
1.00E+00
FALSE


Ptma
−0.190
5.61E−04
−0.201
1.00E+00
−0.178
3.32E−01
FALSE


Ppid
−0.465
5.99E−04
−0.153
1.00E+00
−0.236
9.46E−01
FALSE


Rpl17
0.019
9.31E−01
0.113
1.00E+00
0.194
6.89E−04
FALSE


Rpl31
0.157
8.80E−03
0.091
1.00E+00
0.336
6.95E−04
FALSE


Ccl1
−0.840
7.05E−04
−0.183
1.00E+00
−0.043
1.00E+00
FALSE


Nr3c1
−0.464
7.10E−04
−0.208
1.00E+00
−0.183
1.00E+00
FALSE


Rasgrp4
−0.291
3.75E−02
−1.110
7.22E−04
0.070
9.80E−01
FALSE


Rnf166
0.410
7.68E−04
0.114
1.00E+00
0.282
7.35E−01
FALSE


Coq10b
−0.414
7.70E−04
−0.038
1.00E+00
−0.243
7.99E−01
FALSE


Chka
−0.447
8.50E−04
0.061
1.00E+00
−0.138
1.00E+00
FALSE


Cotl1
0.231
8.55E−04
0.017
1.00E+00
−0.043
1.00E+00
FALSE


Cd47
0.207
9.38E−04
0.187
1.00E+00
0.210
7.35E−01
FALSE


Ralgds
−0.442
9.42E−04
0.199
1.00E+00
−0.194
9.77E−01
FALSE


Arpc5
0.235
9.42E−04
0.010
1.00E+00
−0.173
8.55E−01
FALSE


Samsn1
−0.352
9.42E−04
−0.418
1.00E+00
−0.180
1.00E+00
FALSE


Dgka
0.449
9.42E−04
−0.189
1.00E+00
0.185
1.00E+00
FALSE


Cd40lg
−0.455
9.53E−04
−0.173
1.00E+00
−0.187
1.00E+00
FALSE


BC021614
0.460
9.64E−04
0.777
7.25E−01
0.087
1.00E+00
FALSE


Tsc22d3
0.336
9.41E−03
0.415
1.00E+00
0.729
9.86E−04
FALSE


Sfn
−0.582
9.92E−04
−0.544
7.82E−01
−0.498
4.50E−01
FALSE


Hnrnpa3
0.229
1.00E−03
−0.019
1.00E+00
0.038
1.00E+00
FALSE


Gm42726
0.400
1.15E−03
0.275
9.15E−01
0.553
4.64E−02
FALSE


Ccnd2
−0.336
1.15E−03
−0.198
1.00E+00
−0.473
8.21E−02
FALSE


Rps29
0.070
2.05E−01
0.193
9.15E−01
0.241
1.22E−03
FALSE


Rpl14
−0.002
1.00E+00
0.048
1.00E+00
0.222
1.23E−03
FALSE


Gm5424
0.407
1.24E−03
0.493
6.82E−01
0.013
1.00E+00
FALSE


Eif1
−0.128
1.29E−03
−0.146
1.00E+00
−0.063
9.81E−01
FALSE


Bag3
−0.406
1.29E−03
−0.115
1.00E+00
−0.500
1.69E−01
FALSE


Eif5a
−0.213
1.36E−03
−0.025
1.00E+00
−0.186
7.35E−01
FALSE


Slc5a3
−0.354
1.41E−03
0.000
1.00E+00
−0.174
1.00E+00
FALSE


Traf4
−0.468
1.42E−03
0.135
1.00E+00
−0.030
1.00E+00
FALSE


Traf3ip3
0.439
1.42E−03
0.463
9.74E−01
0.429
3.54E−01
FALSE


Mrps6
−0.503
1.42E−03
0.144
1.00E+00
−0.431
6.93E−01
FALSE


Nfkbia
−0.266
1.43E−03
−0.226
1.00E+00
0.030
1.00E+00
FALSE


Rps27
−0.114
1.53E−03
0.050
1.00E+00
0.173
1.69E−02
FALSE


Cd38
0.495
1.66E−03
0.176
1.00E+00
−0.090
1.00E+00
FALSE


Gimap7
0.261
1.67E−03
0.433
7.11E−01
−0.016
1.00E+00
FALSE


Lcp1
0.222
1.68E−03
0.064
1.00E+00
0.139
9.46E−01
FALSE


Gpr171
0.316
1.71E−03
0.317
1.00E+00
0.039
1.00E+00
FALSE


Gpsm3
0.278
1.72E−03
−0.308
9.34E−01
0.162
9.46E−01
FALSE


Tuba1a
−0.333
1.72E−03
−0.654
5.39E−01
−0.328
6.03E−01
FALSE


Gm8186
0.417
1.72E−03
0.148
1.00E+00
0.284
7.56E−01
FALSE


Ctbp1
0.350
1.72E−03
0.181
1.00E+00
0.040
1.00E+00
FALSE


Tcf7
0.426
1.76E−03
−0.109
1.00E+00
0.256
9.37E−01
FALSE


Ndufs5
−0.348
1.76E−03
−0.573
7.11E−01
−0.148
1.00E+00
FALSE


Fasl
−0.351
1.76E−03
0.453
1.00E+00
−0.156
1.00E+00
FALSE


Ier3ip1
−0.331
1.76E−03
−0.268
1.00E+00
0.084
1.00E+00
FALSE


Itpkb
−0.409
1.80E−03
0.716
8.04E−01
−0.035
1.00E+00
FALSE


Rpl4
0.115
1.80E−03
0.137
1.00E+00
0.137
2.87E−01
FALSE


Ccnl1
−0.372
2.03E−03
0.028
1.00E+00
−0.276
7.39E−01
FALSE


Cd48
0.286
2.03E−03
0.114
1.00E+00
−0.043
1.00E+00
FALSE


Hnrnpab
−0.358
2.03E−03
0.257
1.00E+00
−0.292
7.35E−01
FALSE


Insig1
−0.488
2.03E−03
0.553
9.68E−01
−0.456
3.80E−01
FALSE


Tceb2
−0.198
2.03E−03
−0.050
1.00E+00
−0.130
9.46E−01
FALSE


Gm5093
0.340
2.15E−02
−0.071
1.00E+00
0.630
2.06E−03
FALSE


Tpm4
0.336
2.10E−03
−0.086
1.00E+00
0.312
7.35E−01
FALSE


Ahsa1
−0.379
2.15E−03
0.328
1.00E+00
−0.250
8.11E−01
FALSE


Haghl
0.414
2.15E−03
−0.073
1.00E+00
0.013
1.00E+00
FALSE


Rpl8
0.118
2.22E−03
0.207
8.72E−01
0.226
2.89E−03
FALSE


Tob1
−0.420
2.23E−03
0.073
1.00E+00
−0.367
7.29E−01
FALSE


Nop10
−0.316
2.23E−03
−0.495
7.75E−01
−0.339
3.59E−01
FALSE


Nsa2
0.337
2.28E−03
0.175
1.00E+00
0.020
1.00E+00
FALSE


Nasp
−0.429
2.31E−03
−0.047
1.00E+00
0.232
9.46E−01
FALSE


Il4ra
−0.403
2.35E−03
0.012
1.00E+00
−0.137
1.00E+00
FALSE


Rac2
0.145
2.40E−03
−0.118
1.00E+00
0.090
9.46E−01
FALSE


Gm11273
0.410
2.41E−03
0.413
1.00E+00
0.163
1.00E+00
FALSE


Cd4
−0.070
9.13E−01
−0.953
2.41E−03
0.120
1.00E+00
FALSE


Arf4
−0.256
2.52E−03
−0.236
1.00E+00
−0.350
1.59E−01
FALSE


Supt4a
0.231
2.64E−03
0.021
1.00E+00
0.131
9.97E−01
FALSE


Tmsb10
−0.111
2.66E−03
−0.469
8.84E−03
0.103
8.47E−01
FALSE


Nab1
0.378
2.66E−03
0.461
1.00E+00
0.123
1.00E+00
FALSE


Rps18
0.107
3.65E−03
0.136
9.37E−01
0.206
2.69E−03
FALSE


Gm10260
0.230
2.14E−01
0.200
1.00E+00
0.643
2.69E−03
FALSE


Ly6a
−0.125
5.25E−01
−0.565
2.23E−01
−0.647
2.74E−03
FALSE


Ppp1cc
0.008
1.00E+00
0.247
1.00E+00
−0.500
2.74E−03
FALSE


Gm26917
0.351
3.02E−03
0.441
9.15E−01
0.539
9.89E−03
FALSE


Gm10269
0.401
3.16E−03
0.159
1.00E+00
0.267
7.97E−01
FALSE


Sema4d
0.376
3.19E−03
0.077
1.00E+00
−0.148
1.00E+00
FALSE


Rpl34
0.044
5.40E−01
0.073
1.00E+00
0.193
3.32E−03
FALSE


Ap2s1
0.315
3.87E−03
−0.121
1.00E+00
0.012
1.00E+00
FALSE


Lag3
−0.110
9.31E−01
−0.703
8.71E−01
−1.023
3.92E−03
FALSE


Hbegf
−0.210
3.96E−03
0.000
1.00E+00
−0.054
9.77E−01
FALSE


Tsix
0.391
3.96E−03
0.221
9.15E−01
0.099
1.00E+00
FALSE


Btf3
0.145
4.03E−03
0.201
9.75E−01
0.079
1.00E+00
FALSE


Gm42418
0.397
4.06E−03
−0.702
7.35E−01
0.160
1.00E+00
FALSE


3830403N18Rik
0.436
4.08E−03
0.617
6.82E−01
0.045
9.46E−01
FALSE


Hk2
−0.498
4.17E−03
−0.358
9.17E−01
0.037
1.00E+00
FALSE


Csf1
−0.559
4.41E−03
−0.831
2.44E−01
−0.107
1.00E+00
FALSE


Cxcr3
0.369
4.42E−03
0.544
8.76E−01
0.085
1.00E+00
FALSE


Mt1
0.658
4.42E−03
0.321
9.15E−01
−0.354
9.46E−01
FALSE


Nkg7
0.163
4.42E−03
0.126
1.00E+00
−0.166
4.19E−01
FALSE


Nudc
−0.360
4.43E−03
0.092
1.00E+00
−0.028
1.00E+00
FALSE


Vasp
0.214
4.50E−03
0.150
1.00E+00
0.011
1.00E+00
FALSE


Cd9
−0.494
4.78E−03
−0.244
1.00E+00
0.244
9.77E−01
FALSE


Gzmk
0.579
7.04E−03
1.524
5.05E−03
0.280
3.28E−01
FALSE


Actr3
0.192
5.14E−03
0.060
1.00E+00
−0.017
1.00E+00
FALSE


Lef1
0.365
2.75E−02
−0.360
1.00E+00
0.708
5.26E−03
FALSE


Gm20186
0.449
5.31E−03
−0.193
1.00E+00
0.177
1.00E+00
FALSE


1810041H14Rik
0.428
5.38E−03
1.449
1.80E−02
−0.083
1.00E+00
FALSE


Pdlim2
0.408
5.65E−03
1.038
1.88E−01
0.589
4.34E−02
FALSE


1600014C10Rik
0.431
5.93E−03
0.217
1.00E+00
−0.037
1.00E+00
FALSE


Cyp51
−0.427
5.93E−03
0.596
9.15E−01
−0.344
7.35E−01
FALSE


Prdx1
−0.237
5.93E−03
−0.475
7.11E−01
−0.336
1.78E−01
FALSE


Sigmar1
−0.319
5.95E−03
−0.198
1.00E+00
−0.106
1.00E+00
FALSE


1810058124Rik
0.323
6.04E−03
−0.052
1.00E+00
0.148
1.00E+00
FALSE


Rps7
0.104
6.04E−03
0.186
9.15E−01
0.176
2.29E−02
FALSE


Eno1
0.233
6.04E−03
−0.361
9.15E−01
0.324
2.78E−01
FALSE


Ndufa6
0.227
6.06E−03
0.140
1.00E+00
0.180
8.39E−01
FALSE


Gm10146
0.151
6.18E−03
−0.119
1.00E+00
0.076
1.00E+00
FALSE


Dusp14
−0.426
6.18E−03
0.324
9.15E−01
−0.222
9.77E−01
FALSE


Il18r1
0.033
1.00E+00
−1.158
6.35E−03
0.235
9.46E−01
FALSE


Cuedc2
0.428
6.51E−03
−0.185
1.00E+00
0.051
1.00E+00
FALSE


Gyg
0.417
6.55E−03
0.060
1.00E+00
0.031
1.00E+00
FALSE


Ptafr
−0.416
6.56E−03
−0.186
9.15E−01
0.025
1.00E+00
FALSE


Rpl13a-ps1
0.322
4.64E−02
−0.227
1.00E+00
0.637
6.57E−03
FALSE


Klrb1f
0.353
6.58E−03
0.484
9.15E−01
0.020
1.00E+00
FALSE


Psme2b
0.400
6.68E−03
−0.054
1.00E+00
0.240
9.46E−01
FALSE


Rras2
0.450
6.68E−03
−0.666
8.71E−01
0.120
1.00E+00
FALSE


Naca
0.143
6.88E−03
0.104
1.00E+00
0.081
1.00E+00
FALSE


Rps4x
0.084
5.61E−02
0.223
7.11E−01
0.200
6.95E−03
FALSE


Arl6ip1
−0.237
7.04E−03
−0.085
1.00E+00
0.120
1.00E+00
FALSE


Fabp5
−0.413
7.29E−03
0.290
1.00E+00
−0.114
1.00E+00
FALSE


Bhlhe40
−0.178
7.29E−03
0.584
9.15E−01
0.150
9.46E−01
FALSE


Ifi27l2a
−0.453
7.29E−03
−0.400
1.00E+00
−0.400
5.03E−01
FALSE


Gch1
−0.354
7.34E−03
−0.211
1.00E+00
−0.177
1.00E+00
FALSE


Pdcd6ip
0.333
7.47E−03
0.094
1.00E+00
0.163
1.00E+00
FALSE


Tmem30a
0.354
7.50E−03
0.730
6.80E−01
−0.044
1.00E+00
FALSE


Nkiras2
0.385
7.50E−03
0.432
9.94E−01
−0.114
1.00E+00
FALSE


mt-Nd4
−0.178
7.50E−03
−0.397
6.32E−01
−0.183
7.35E−01
FALSE


5730508B09Rik
0.411
7.56E−03
0.289
1.00E+00
0.126
1.00E+00
FALSE


Myl6
−0.135
7.97E−03
−0.218
9.15E−01
−0.269
3.29E−02
FALSE


Atp5e
−0.169
8.21E−03
−0.317
9.14E−01
−0.217
4.85E−01
FALSE


Wdr1
0.295
8.31E−03
−0.266
1.00E+00
0.122
1.00E+00
FALSE


Atp5c1
0.206
8.34E−03
0.374
8.76E−01
0.219
7.35E−01
FALSE


Itgb1
−0.468
8.89E−03
−0.618
8.72E−01
0.090
1.00E+00
FALSE


Cox5b
0.196
9.36E−03
0.240
1.00E+00
−0.081
1.00E+00
FALSE


Serpinb9
0.353
9.55E−03
−0.480
9.50E−01
0.299
8.20E−01
FALSE


Plcxd2
0.420
9.75E−03
0.231
1.00E+00
0.296
8.28E−01
FALSE


Lmnb1
−0.311
9.75E−03
−0.390
1.00E+00
−0.461
5.14E−02
FALSE


Adrbk1
0.381
9.85E−03
−0.165
1.00E+00
0.340
6.97E−01
FALSE


Nop56
−0.353
9.85E−03
−0.093
1.00E+00
−0.215
9.46E−01
FALSE


Cox6a1
−0.185
1.01E−02
−0.139
1.00E+00
−0.212
6.21E−01
FALSE


Eif3e
0.189
1.05E−02
0.450
6.82E−01
0.126
9.63E−01
FALSE


Pabpc1
0.143
1.07E−02
0.174
1.00E+00
0.076
1.00E+00
FALSE


Ier5
−0.307
1.09E−02
−0.209
1.00E+00
−0.233
9.46E−01
FALSE


Ywhae
0.259
1.09E−02
0.123
1.00E+00
−0.257
7.35E−01
FALSE


Ndufs2
0.339
1.09E−02
0.051
1.00E+00
0.250
8.90E−01
FALSE


Gpr87
0.190
1.10E−02
0.000
1.00E+00
0.049
7.35E−01
FALSE


Tox
−0.224
1.14E−02
−0.463
8.31E−01
0.143
1.00E+00
FALSE


Dnajb6
−0.216
1.16E−02
−0.168
1.00E+00
−0.067
1.00E+00
FALSE


Atp8a2
0.389
1.16E−02
0.651
8.72E−01
0.250
8.07E−01
FALSE


Upf3a
0.388
1.19E−02
−0.135
1.00E+00
0.269
8.90E−01
FALSE


Qrfp
0.330
1.20E−02
0.048
1.00E+00
0.024
1.00E+00
FALSE


PhIda1
−0.420
1.21E−02
−1.539
1.35E−02
−0.750
3.16E−02
FALSE


Mta3
0.395
1.22E−02
0.655
8.76E−01
0.344
7.29E−01
FALSE


Kcnk5
−0.422
1.24E−02
0.004
1.00E+00
−0.163
1.00E+00
FALSE


Myo1g
0.320
1.24E−02
0.229
1.00E+00
0.108
1.00E+00
FALSE


Leprotl1
0.262
1.27E−02
−0.297
1.00E+00
0.065
1.00E+00
FALSE


Cbfa2t3
−0.182
1.29E−02
0.000
1.00E+00
0.000
1.00E+00
FALSE


Fis1
0.262
1.32E−02
0.128
1.00E+00
0.027
1.00E+00
FALSE


Gpx1
−0.347
1.39E−02
−0.165
1.00E+00
−0.418
3.81E−01
FALSE


Ctla4
−0.212
1.36E−01
−0.682
8.76E−01
−0.553
1.42E−02
FALSE


Bptf
−0.374
1.45E−02
−0.037
1.00E+00
−0.242
9.46E−01
FALSE


Rplp2
−0.097
1.45E−02
−0.067
1.00E+00
0.169
8.47E−02
FALSE


S1pr4
0.281
1.55E−02
0.045
1.00E+00
0.322
5.96E−01
FALSE


Ndufa10
0.312
1.56E−02
−0.009
1.00E+00
−0.005
1.00E+00
FALSE


Zfp706
0.270
1.59E−02
−0.057
1.00E+00
−0.138
1.00E+00
FALSE


Lcn4
0.424
1.59E−02
−0.167
1.00E+00
0.295
5.47E−01
FALSE


Ndufa5
−0.315
1.60E−02
−0.163
1.00E+00
−0.082
1.00E+00
FALSE


Hnrnpf
0.157
1.61E−02
0.229
9.64E−01
0.005
1.00E+00
FALSE


Pglyrp1
0.344
1.61E−02
0.297
1.00E+00
0.190
1.00E+00
FALSE


Ccni
0.337
1.61E−02
0.026
1.00E+00
0.053
1.00E+00
FALSE


Usp28
−0.102
1.65E−02
0.000
1.00E+00
−0.008
1.00E+00
FALSE


Adrb2
−0.424
1.65E−02
0.065
1.00E+00
−0.173
1.00E+00
FALSE


Cox7c
−0.160
1.65E−02
−0.563
2.25E−02
−0.196
5.04E−01
FALSE


Klra3
0.342
1.66E−02
0.176
1.00E+00
0.000
1.00E+00
FALSE


Traf1
−0.207
1.67E−02
−0.224
1.00E+00
0.048
1.00E+00
FALSE


Idi1
−0.396
1.67E−02
0.034
1.00E+00
−0.128
1.00E+00
FALSE


Capzb
0.178
1.67E−02
−0.097
1.00E+00
−0.183
7.35E−01
FALSE


Jtb
0.329
1.68E−02
−0.142
1.00E+00
−0.236
9.46E−01
FALSE


Tiparp
−0.384
1.70E−02
0.238
1.00E+00
−0.154
1.00E+00
FALSE


Arpp19
−0.196
1.71E−02
−0.612
1.15E−01
−0.077
1.00E+00
FALSE


Creg1
−0.356
1.77E−02
−0.250
1.00E+00
−0.091
1.00E+00
FALSE


Ten1
0.365
1.77E−02
0.388
1.00E+00
0.065
1.00E+00
FALSE


Grcc10
0.340
1.81E−02
−0.682
5.39E−01
0.383
5.47E−01
FALSE


Grk6
0.312
1.82E−02
0.307
1.00E+00
0.284
7.35E−01
FALSE


2210011C24Rik
−0.347
1.84E−02
−0.271
1.00E+00
−0.095
1.00E+00
FALSE


Racgap1
0.399
1.87E−02
0.222
1.00E+00
0.518
1.15E−01
FALSE


Bcl3
0.382
1.92E−02
0.215
1.00E+00
0.069
1.00E+00
FALSE


Slc7a5
−0.363
1.92E−02
0.493
6.82E−01
−0.261
9.46E−01
FALSE


Rnf44
0.380
1.93E−02
0.634
7.11E−01
−0.204
9.97E−01
FALSE


Rcn2
−0.368
1.94E−02
−0.171
1.00E+00
−0.038
1.00E+00
FALSE


G3bp2
−0.325
1.94E−02
0.028
1.00E+00
−0.415
2.68E−01
FALSE


Arf6
−0.223
1.95E−02
0.089
1.00E+00
−0.014
1.00E+00
FALSE


Sqstm1
−0.262
1.95E−02
0.318
1.00E+00
−0.488
8.47E−02
FALSE


Cmtm7
0.296
1.97E−02
1.027
8.51E−02
0.302
6.14E−01
FALSE


Rhof
−0.357
2.01E−02
0.368
1.00E+00
−0.245
9.46E−01
FALSE


Atp1b3
0.309
2.02E−02
−0.247
1.00E+00
0.171
1.00E+00
FALSE


H2afx
−0.371
2.02E−02
0.061
1.00E+00
0.075
1.00E+00
FALSE


Tmem176a
−0.510
2.04E−02
−0.984
5.60E−01
0.024
1.00E+00
FALSE


Tiprl
−0.311
2.06E−02
0.187
1.00E+00
−0.049
1.00E+00
FALSE


Gla
−0.349
2.10E−02
0.000
1.00E+00
0.021
1.00E+00
FALSE


Mgst2
0.388
2.10E−02
−0.115
1.00E+00
−0.022
1.00E+00
FALSE


Lgals3
−0.235
2.11E−02
−0.463
9.15E−01
0.243
9.55E−01
FALSE


Rgs3
0.392
2.11E−02
−0.055
1.00E+00
−0.033
1.00E+00
FALSE


Pttg1
−0.339
2.11E−02
−0.324
1.00E+00
−0.268
7.97E−01
FALSE


Ncald
0.356
2.13E−02
0.427
1.00E+00
−0.122
1.00E+00
FALSE


Gadd45b
−0.198
4.60E−01
0.177
1.00E+00
−0.729
2.24E−02
FALSE


Malt1
0.138
7.69E−01
−0.002
1.00E+00
0.595
2.26E−02
FALSE


Dgat1
−0.058
9.75E−01
−0.018
1.00E+00
−0.636
2.27E−02
FALSE


Ubxn1
0.282
2.27E−02
−0.490
9.15E−01
0.257
7.41E−01
FALSE


Minos1
−0.224
2.30E−02
−0.557
4.66E−01
0.016
1.00E+00
FALSE


Dctpp1
−0.347
2.43E−02
−0.144
1.00E+00
−0.639
3.29E−02
FALSE


Arrb2
0.318
2.45E−02
0.438
9.15E−01
0.178
1.00E+00
FALSE


Ifngr1
0.031
9.32E−01
−0.282
1.00E+00
0.312
2.50E−02
FALSE


Mcpt1
−0.103
2.50E−02
−0.176
9.15E−01
0.000
1.00E+00
FALSE


Kcnab2
0.335
2.61E−02
−0.066
1.00E+00
0.257
9.26E−01
FALSE


Nme1
−0.256
2.61E−02
−0.026
1.00E+00
−0.321
6.24E−01
FALSE


Ehd3
0.385
2.62E−02
−0.101
1.00E+00
0.040
1.00E+00
FALSE


Slbp
−0.286
2.62E−02
−0.230
1.00E+00
−0.194
9.46E−01
FALSE


Sparc
−0.187
2.63E−02
0.000
1.00E+00
−0.042
1.00E+00
FALSE


Ywhab
0.282
2.72E−02
−0.069
1.00E+00
0.027
1.00E+00
FALSE


Umps
−0.356
2.75E−02
0.090
1.00E+00
0.140
1.00E+00
FALSE


Zfand2b
0.348
2.78E−02
−0.257
1.00E+00
0.097
1.00E+00
FALSE


Vamp4
0.345
2.78E−02
−0.247
1.00E+00
−0.037
1.00E+00
FALSE


Pcgf1
0.323
2.78E−02
0.091
1.00E+00
−0.006
1.00E+00
FALSE


Srgap3
−0.127
2.79E−02
0.000
1.00E+00
−0.087
7.97E−01
FALSE


H2-DMa
0.363
2.83E−02
−0.277
1.00E+00
−0.222
9.46E−01
FALSE


Dkkl1
−0.357
2.83E−02
−0.728
7.11E−01
−0.088
1.00E+00
FALSE


Camk2n1
−0.374
2.84E−02
0.020
1.00E+00
−0.148
1.00E+00
FALSE


Dnajb9
−0.335
2.84E−02
−0.029
1.00E+00
−0.028
1.00E+00
FALSE


Irf2
0.347
2.86E−02
0.340
1.00E+00
0.224
9.01E−01
FALSE


Gas7
−0.410
2.91E−02
−0.252
1.00E+00
−0.095
1.00E+00
FALSE


Eef1a1
0.015
9.92E−01
0.083
1.00E+00
0.160
2.91E−02
FALSE


Dtx1
0.383
2.92E−02
1.064
2.57E−01
0.003
1.00E+00
FALSE


Tra2b
−0.246
2.98E−02
−0.198
1.00E+00
−0.211
7.41E−01
FALSE


Zfp207
−0.006
1.00E+00
1.181
3.02E−02
0.121
1.00E+00
FALSE


Wac
−0.329
3.02E−02
0.143
1.00E+00
−0.013
1.00E+00
FALSE


H2-Q10
−0.344
3.05E−02
0.052
1.00E+00
−0.276
9.46E−01
FALSE


Ino80b
0.357
3.06E−02
0.345
1.00E+00
0.163
1.00E+00
FALSE


Dnajb2
−0.299
3.06E−02
−0.203
1.00E+00
−0.143
1.00E+00
FALSE


Abhd2
−0.391
3.07E−02
0.058
1.00E+00
−0.104
1.00E+00
FALSE


Hmha1
0.213
3.07E−02
−0.187
1.00E+00
0.225
7.12E−01
FALSE


Rbm39
−0.145
3.08E−02
0.144
1.00E+00
−0.057
1.00E+00
FALSE


Cox17
−0.225
3.08E−02
−0.523
4.52E−01
−0.216
7.61E−01
FALSE


Lpcat4
0.358
3.10E−02
0.324
9.15E−01
0.187
9.97E−01
FALSE


Rps3
0.083
3.10E−02
0.221
6.98E−01
0.147
6.94E−02
FALSE


Eef1b2
0.105
4.60E−01
0.269
1.00E+00
0.352
3.11E−02
FALSE


Pltp
0.026
1.00E+00
−1.002
3.15E−02
0.104
1.00E+00
FALSE


Pcbd2
−0.363
3.18E−02
−0.327
1.00E+00
−0.114
1.00E+00
FALSE


Eif3h
0.148
3.18E−02
0.241
9.75E−01
0.194
6.12E−01
FALSE


Fam103a1
0.235
3.20E−02
0.525
8.76E−01
−0.045
1.00E+00
FALSE


H2-Ke6
−0.334
3.20E−02
0.192
1.00E+00
0.039
1.00E+00
FALSE


Ube2v1
0.305
3.32E−02
−0.059
1.00E+00
0.246
8.36E−01
FALSE


Tbc1d22a
0.117
7.96E−01
−1.021
3.39E−02
0.012
1.00E+00
FALSE


Gimap6
0.179
3.39E−02
0.096
1.00E+00
−0.086
1.00E+00
FALSE


Mien1
−0.260
3.43E−02
−0.462
9.15E−01
−0.345
5.06E−01
FALSE


Cbwd1
0.228
3.43E−02
0.007
1.00E+00
0.168
9.56E−01
FALSE


Kxd1
0.305
3.43E−02
0.388
1.00E+00
0.295
7.35E−01
FALSE


Rpl39
0.101
3.43E−02
0.185
9.15E−01
0.134
4.67E−01
FALSE


Dedd2
−0.264
1.92E−01
−0.225
1.00E+00
−0.657
3.47E−02
FALSE


Tbc1d17
0.340
3.50E−02
0.289
1.00E+00
0.240
9.46E−01
FALSE


Rpl23a
−0.080
3.50E−02
0.004
1.00E+00
0.100
5.96E−01
FALSE


Coro1b
0.310
3.50E−02
0.281
1.00E+00
0.261
8.78E−01
FALSE


Tmem71
0.354
3.62E−02
−0.056
1.00E+00
0.410
5.04E−01
FALSE


Tmem9b
0.291
3.64E−02
0.253
1.00E+00
0.108
1.00E+00
FALSE


S100a6
−0.059
8.25E−01
−0.248
1.00E+00
−0.564
3.72E−02
FALSE


Fam49b
0.219
3.75E−02
0.090
1.00E+00
−0.029
1.00E+00
FALSE


Fundc2
0.288
3.77E−02
0.126
1.00E+00
0.407
3.32E−01
FALSE


Smim24
0.243
3.77E−02
−0.154
9.15E−01
0.055
1.00E+00
FALSE


Pdia6
−0.296
3.79E−02
−0.657
7.11E−01
−0.255
8.90E−01
FALSE


Klrc1
−0.278
3.82E−02
−0.712
8.76E−01
0.430
7.35E−01
FALSE


Pelp1
−0.266
3.85E−02
−0.372
9.96E−01
−0.099
1.00E+00
FALSE


Ncl
−0.195
3.85E−02
0.012
1.00E+00
−0.067
1.00E+00
FALSE


Efcab7
0.106
3.88E−02
0.055
1.00E+00
−0.062
1.00E+00
FALSE


Arl4a
−0.350
3.88E−02
0.488
9.15E−01
−0.074
1.00E+00
FALSE


Id3
−0.404
3.89E−02
−0.430
1.00E+00
0.036
1.00E+00
FALSE


Gm27166
−0.090
3.95E−02
−0.218
1.00E+00
0.000
1.00E+00
FALSE


Tnfaip8
−0.284
3.97E−02
−0.300
1.00E+00
0.123
1.00E+00
FALSE


Rps26
0.132
4.28E−02
0.146
1.00E+00
−0.003
1.00E+00
FALSE


Map2k3
−0.280
4.28E−02
−0.009
1.00E+00
−0.411
4.91E−01
FALSE


Pfn1
0.098
4.30E−02
−0.050
1.00E+00
−0.053
1.00E+00
FALSE


Acoxl
0.266
4.33E−02
0.135
1.00E+00
−0.180
9.46E−01
FALSE


Cxcl10
−0.504
4.35E−02
−0.424
8.76E−01
0.135
1.00E+00
FALSE


Mbd2
−0.321
4.35E−02
−0.438
1.00E+00
−0.068
1.00E+00
FALSE


Fcrls
−0.105
4.35E−02
0.064
1.00E+00
−0.074
9.46E−01
FALSE


Arpc1b
0.128
4.42E−02
−0.038
1.00E+00
−0.078
1.00E+00
FALSE


Tomm7
−0.200
4.43E−02
−0.506
5.07E−01
−0.005
1.00E+00
FALSE


Idh2
0.319
4.43E−02
0.190
1.00E+00
0.073
1.00E+00
FALSE


Gbp2
0.396
4.43E−02
−0.357
1.00E+00
−0.043
1.00E+00
FALSE


Rpl28
0.143
4.43E−02
0.150
1.00E+00
0.112
9.46E−01
FALSE


Pgk1
0.324
4.46E−02
0.573
8.76E−01
0.211
7.35E−01
FALSE


Caprin1
0.343
4.49E−02
0.070
1.00E+00
−0.007
1.00E+00
FALSE


Rpl7
0.101
4.51E−02
0.178
9.96E−01
0.157
3.06E−01
FALSE


Chmp6
0.336
4.53E−02
0.110
1.00E+00
0.248
9.40E−01
FALSE


Mtx2
−0.324
4.55E−02
−0.280
1.00E+00
0.122
1.00E+00
FALSE


Cmc1
−0.009
1.00E+00
−0.099
1.00E+00
−0.605
4.62E−02
FALSE


Gm4950
0.216
3.59E−01
0.474
9.96E−01
0.569
4.66E−02
FALSE


Clic1
0.142
4.69E−02
0.072
1.00E+00
0.102
1.00E+00
FALSE


Junb
−0.182
4.71E−02
−0.519
7.11E−01
−0.132
9.47E−01
FALSE


Rasl11a
−0.452
4.71E−02
0.081
1.00E+00
−0.054
1.00E+00
FALSE


Celf2
0.236
4.81E−02
0.202
1.00E+00
0.116
1.00E+00
FALSE


Rps15a
−0.038
6.52E−01
0.006
1.00E+00
0.153
4.90E−02
FALSE


Mapkap1
0.130
7.72E−01
−1.060
4.90E−02
−0.216
1.00E+00
FALSE


Man1a
−0.336
5.01E−02
−0.184
1.00E+00
−0.014
1.00E+00
FALSE


Vcpip1
−0.311
5.17E−02
0.086
1.00E+00
−0.164
1.00E+00
FALSE


Zfp280d
0.083
9.31E−01
0.025
1.00E+00
0.564
5.20E−02
FALSE


Pstpip1
0.278
5.28E−02
0.256
1.00E+00
0.157
1.00E+00
FALSE


Gramd3
0.212
5.32E−02
0.502
9.26E−01
0.260
5.46E−01
FALSE


Edaradd
−0.285
5.32E−02
0.033
1.00E+00
−0.097
7.83E−01
FALSE


Mrpl46
−0.108
8.72E−01
−0.102
1.00E+00
−0.596
5.35E−02
FALSE


Ecm1
−0.279
5.39E−02
−0.297
1.00E+00
−0.129
1.00E+00
FALSE


Gmfb
0.328
5.39E−02
0.229
1.00E+00
−0.132
1.00E+00
FALSE


Rps16
−0.068
1.32E−01
−0.051
1.00E+00
0.154
5.42E−02
FALSE


Atp6v0e
−0.084
6.84E−01
−0.439
7.11E−01
−0.408
5.42E−02
FALSE


Ppp2ca
−0.214
5.53E−02
−0.178
1.00E+00
−0.029
1.00E+00
FALSE


Spint2
−0.307
5.56E−02
−0.062
1.00E+00
−0.036
1.00E+00
FALSE


Gm10031
0.188
5.60E−02
0.051
1.00E+00
0.033
1.00E+00
FALSE


Fam134b
0.334
5.61E−02
−0.002
1.00E+00
0.052
1.00E+00
FALSE


Wdr45b
−0.324
5.61E−02
−1.048
1.03E−01
0.043
1.00E+00
FALSE


Lypla1
0.291
5.63E−02
0.042
1.00E+00
0.041
1.00E+00
FALSE


B4galnt4
0.211
5.68E−02
0.102
1.00E+00
−0.115
7.35E−01
FALSE


Gstt2
0.331
5.77E−02
0.544
9.15E−01
−0.080
1.00E+00
FALSE


Sh2d2a
0.242
5.78E−02
0.730
5.39E−01
0.125
1.00E+00
FALSE


Mllt3
−0.024
1.00E+00
−1.062
5.81E−02
0.144
1.00E+00
FALSE


H2-DMb1
0.138
5.85E−02
−0.045
1.00E+00
−0.032
1.00E+00
FALSE


BC055324
−0.090
5.85E−02
0.000
1.00E+00
0.094
7.35E−01
FALSE


Csrnp1
−0.331
5.85E−02
0.202
1.00E+00
−0.254
9.40E−01
FALSE


Zyg11b
0.329
5.85E−02
0.333
1.00E+00
−0.155
1.00E+00
FALSE


Hadha
0.321
5.85E−02
0.074
1.00E+00
−0.224
9.61E−01
FALSE


Dnaja4
−0.385
5.87E−02
−0.358
1.00E+00
−0.514
3.37E−01
FALSE


Abcg2
−0.115
5.89E−02
0.000
1.00E+00
−0.043
1.00E+00
FALSE


Unc119b
0.327
5.90E−02
0.779
6.82E−01
−0.031
1.00E+00
FALSE


Ablim1
0.278
5.90E−02
−0.098
1.00E+00
−0.153
1.00E+00
FALSE


Zmym2
−0.045
1.00E+00
0.119
1.00E+00
0.465
5.96E−02
FALSE


Ncf1
0.280
5.96E−02
0.136
1.00E+00
0.163
7.21E−01
FALSE


Tomm22
0.220
5.97E−02
0.135
1.00E+00
0.040
1.00E+00
FALSE


Srsf5
−0.179
5.98E−02
0.235
1.00E+00
−0.080
1.00E+00
FALSE


Plin2
−0.345
5.99E−02
−0.147
1.00E+00
−0.199
9.84E−01
FALSE


Tlk1
0.321
5.99E−02
0.084
1.00E+00
0.095
1.00E+00
FALSE


Cenpl
−0.337
5.99E−02
−0.048
1.00E+00
−0.152
1.00E+00
FALSE


Galnt3
−0.232
6.00E−02
0.000
1.00E+00
−0.059
9.46E−01
FALSE


Gm16286
0.160
5.25E−01
0.064
1.00E+00
−0.520
6.01E−02
FALSE


Ctnna1
−0.336
6.03E−02
−0.153
1.00E+00
0.048
1.00E+00
FALSE


Ift52
0.337
6.05E−02
0.630
8.76E−01
−0.119
1.00E+00
FALSE


Alg6
−0.185
6.08E−02
−0.153
1.00E+00
0.014
1.00E+00
FALSE


Orc4
0.330
6.08E−02
−0.195
1.00E+00
0.140
1.00E+00
FALSE


Otud1
−0.266
6.17E−02
0.000
1.00E+00
0.036
1.00E+00
FALSE


Ipo11
−0.273
6.20E−02
−0.683
2.94E−01
−0.156
9.77E−01
FALSE


Gm12216
0.333
6.20E−02
−0.090
1.00E+00
0.204
1.00E+00
FALSE


D3Ertd751e
−0.267
6.20E−02
−0.170
1.00E+00
−0.156
1.00E+00
FALSE


Tnfrsf13c
0.174
6.20E−02
0.051
1.00E+00
0.014
1.00E+00
FALSE


Hist1h1e
0.316
6.21E−02
0.546
6.92E−01
0.235
6.69E−01
FALSE


Emp1
−0.334
6.44E−02
−0.323
1.00E+00
0.118
1.00E+00
FALSE


Pcbp2
0.180
6.44E−02
0.128
1.00E+00
0.016
1.00E+00
FALSE


Tspan3
0.337
6.51E−02
0.000
1.00E+00
0.270
7.96E−01
FALSE


Xpa
0.315
6.52E−02
0.152
1.00E+00
0.172
1.00E+00
FALSE


Tmem173
0.320
6.52E−02
−0.293
1.00E+00
−0.230
9.46E−01
FALSE


Ndufa4
0.236
6.53E−02
0.088
1.00E+00
−0.274
4.85E−01
FALSE


Mrto4
−0.325
6.54E−02
−0.203
1.00E+00
−0.130
1.00E+00
FALSE


Zfp277
0.321
6.64E−02
0.146
1.00E+00
0.274
8.15E−01
FALSE


Nrp1
−0.342
6.68E−02
0.285
8.76E−01
0.057
7.35E−01
FALSE


Yme1l1
−0.313
6.68E−02
−0.138
1.00E+00
−0.183
1.00E+00
FALSE


Eva1b
0.313
6.72E−02
0.297
1.00E+00
0.073
1.00E+00
FALSE


Pkp4
0.176
6.72E−02
−0.113
1.00E+00
0.002
1.00E+00
FALSE


Etfb
−0.269
6.77E−02
−0.375
9.96E−01
−0.039
1.00E+00
FALSE


Psmc2
−0.280
6.77E−02
0.033
1.00E+00
−0.148
1.00E+00
FALSE


Fmnl1
0.284
6.82E−02
0.332
1.00E+00
0.254
8.90E−01
FALSE


Ddit4
−0.349
6.85E−02
−0.244
1.00E+00
−0.132
1.00E+00
FALSE


Atpif1
−0.254
6.92E−02
−0.100
1.00E+00
0.157
1.00E+00
FALSE


Uqcrh
0.127
6.93E−02
0.100
1.00E+00
−0.025
1.00E+00
FALSE


Sfpq
0.230
6.95E−02
0.870
2.05E−01
−0.057
1.00E+00
FALSE


Psmb10
0.243
6.95E−02
−0.180
1.00E+00
0.238
8.20E−01
FALSE


Rab5c
−0.261
6.96E−02
−0.087
1.00E+00
−0.038
1.00E+00
FALSE


Phf3
−0.305
6.96E−02
0.196
1.00E+00
−0.109
1.00E+00
FALSE


Dusp5
−0.200
6.98E−02
−0.086
1.00E+00
−0.135
1.00E+00
FALSE


Psmb1
0.145
6.98E−02
0.181
1.00E+00
0.144
8.93E−01
FALSE


Mrpl43
0.282
6.98E−02
−0.374
1.00E+00
−0.221
9.57E−01
FALSE


Dusp12
0.086
9.05E−01
−0.202
1.00E+00
0.547
6.99E−02
FALSE


Rpn2
−0.264
7.05E−02
−0.278
1.00E+00
−0.187
9.77E−01
FALSE


Magohb
0.328
7.05E−02
0.218
1.00E+00
−0.065
1.00E+00
FALSE


Pcna
−0.291
7.34E−02
−0.023
1.00E+00
−0.035
1.00E+00
FALSE


Nrros
−0.379
7.36E−02
−0.237
1.00E+00
0.068
1.00E+00
FALSE


Banf1
−0.297
7.43E−02
0.297
1.00E+00
−0.039
1.00E+00
FALSE


Zfp40
0.101
7.43E−02
−0.176
9.15E−01
0.048
9.46E−01
FALSE


Tmem109
−0.320
7.47E−02
−0.005
1.00E+00
−0.051
1.00E+00
FALSE


Lbh
0.297
7.49E−02
0.253
1.00E+00
−0.370
6.10E−01
FALSE


Surf1
0.304
7.50E−02
0.341
1.00E+00
0.176
1.00E+00
FALSE


Ppp1ca
0.139
7.50E−02
−0.055
1.00E+00
−0.015
1.00E+00
FALSE


Arid4b
−0.315
7.50E−02
−0.382
1.00E+00
0.147
1.00E+00
FALSE


Akr1a1
0.223
7.50E−02
0.014
1.00E+00
0.033
1.00E+00
FALSE


Ctsb
−0.040
1.00E+00
−0.149
1.00E+00
−0.485
7.51E−02
FALSE


Amd1
−0.337
7.59E−02
−0.231
1.00E+00
−0.155
1.00E+00
FALSE


Tulp3
0.134
7.60E−02
0.058
1.00E+00
−0.043
1.00E+00
FALSE


Hsd17b7
−0.260
7.72E−02
−0.222
1.00E+00
−0.024
1.00E+00
FALSE


Nsun3
0.221
7.72E−02
0.333
1.00E+00
0.163
1.00E+00
FALSE


Tgfbr1
−0.276
7.74E−02
0.522
9.15E−01
−0.067
1.00E+00
FALSE


Lsm2
−0.308
7.80E−02
−0.321
1.00E+00
−0.023
1.00E+00
FALSE


Fam118b
0.255
7.84E−02
0.261
1.00E+00
0.244
7.35E−01
FALSE


Impact
−0.321
7.84E−02
0.441
1.00E+00
−0.186
1.00E+00
FALSE


Lamtor1
0.291
7.84E−02
−0.066
1.00E+00
−0.020
1.00E+00
FALSE


R3hdm4
0.273
7.87E−02
−0.385
1.00E+00
−0.149
1.00E+00
FALSE


Ilk
0.286
7.88E−02
−0.143
1.00E+00
0.310
7.35E−01
FALSE


mt-Nd3
−0.253
9.74E−02
−0.472
9.15E−01
−0.548
7.90E−02
FALSE


Mdh1
−0.024
1.00E+00
−0.038
1.00E+00
−0.428
7.90E−02
FALSE


Rpl27
0.089
7.95E−02
0.094
1.00E+00
0.133
3.83E−01
FALSE


Enc1
−0.105
7.96E−02
0.059
1.00E+00
−0.067
9.46E−01
FALSE


Cd3d
0.025
1.00E+00
−0.443
7.99E−02
−0.055
1.00E+00
FALSE


Rnf2
0.314
8.02E−02
0.039
1.00E+00
0.139
1.00E+00
FALSE


Rnf167
−0.155
6.14E−01
−0.996
8.03E−02
0.336
6.95E−01
FALSE


Ptpn1
−0.048
9.95E−01
0.347
1.00E+00
−0.471
8.07E−02
FALSE


Grhpr
0.283
8.07E−02
0.106
1.00E+00
0.037
1.00E+00
FALSE


Polr2f
−0.285
8.11E−02
−0.614
8.71E−01
0.012
1.00E+00
FALSE


Vcp
−0.107
6.84E−01
−0.592
6.37E−01
−0.475
8.19E−02
FALSE


Atl2
−0.280
8.20E−02
0.000
1.00E+00
0.188
1.00E+00
FALSE


Etv5
−0.078
8.20E−02
0.109
1.00E+00
−0.018
1.00E+00
FALSE


Postn
−0.077
8.20E−02
0.000
1.00E+00
−0.022
1.00E+00
FALSE


Gm18025
0.197
8.27E−02
0.000
1.00E+00
0.093
1.00E+00
FALSE


Pot1a
0.288
8.27E−02
−0.438
9.15E−01
0.031
1.00E+00
FALSE


Sdhb
0.224
8.27E−02
−0.064
1.00E+00
0.014
1.00E+00
FALSE


Bmyc
−0.252
8.27E−02
−0.049
1.00E+00
0.074
1.00E+00
FALSE


Hamp
−0.072
8.27E−02
0.000
1.00E+00
0.000
1.00E+00
FALSE


Btg1
0.124
1.23E−01
0.404
6.60E−01
0.229
8.31E−02
FALSE


Il4
0.110
8.33E−02
−0.335
7.11E−01
0.000
1.00E+00
FALSE


Nrg4
−0.070
8.33E−02
−0.175
9.15E−01
−0.011
1.00E+00
FALSE


Eif2a
0.296
8.33E−02
0.207
1.00E+00
0.297
7.42E−01
FALSE


Xbp1
−0.236
1.17E−01
0.226
1.00E+00
−0.512
8.36E−02
FALSE


Btg3
0.296
8.36E−02
−0.102
1.00E+00
0.404
4.24E−01
FALSE


Skap1
−0.084
7.23E−01
−0.735
8.40E−02
0.052
1.00E+00
FALSE


Lysmd2
0.341
8.45E−02
0.142
1.00E+00
−0.156
1.00E+00
FALSE


Golm1
0.316
8.45E−02
−0.067
1.00E+00
0.027
1.00E+00
FALSE


1700025G04Rik
0.329
8.48E−02
−0.016
1.00E+00
0.461
1.30E−01
FALSE


Arf5
0.066
7.56E−01
0.088
1.00E+00
−0.329
8.50E−02
FALSE


Rpl9
−0.078
8.62E−02
0.056
1.00E+00
0.032
1.00E+00
FALSE


Thap3
0.316
8.66E−02
0.168
1.00E+00
0.162
1.00E+00
FALSE


Hmgb3
−0.281
8.66E−02
0.003
1.00E+00
0.093
1.00E+00
FALSE


Sirt2
0.269
8.67E−02
0.180
1.00E+00
−0.080
1.00E+00
FALSE


Rbm8a2
0.307
8.67E−02
0.102
1.00E+00
0.086
1.00E+00
FALSE


Elmsan1
0.171
5.18E−01
0.276
9.15E−01
0.478
8.68E−02
FALSE


Gm12355
0.215
1.99E−01
0.329
8.80E−01
0.461
8.69E−02
FALSE


Chst11
0.008
1.00E+00
0.199
1.00E+00
−0.507
8.69E−02
FALSE


Gm6576
0.212
8.76E−02
0.170
1.00E+00
0.201
8.03E−01
FALSE


Rpe
0.309
8.76E−02
0.388
1.00E+00
0.361
5.96E−01
FALSE


Exph5
−0.115
8.76E−02
0.059
1.00E+00
0.000
1.00E+00
FALSE


Snx5
0.265
8.76E−02
−0.061
1.00E+00
−0.016
1.00E+00
FALSE


Rpl35a
0.035
7.86E−01
0.041
1.00E+00
0.175
8.83E−02
FALSE


Aars
−0.293
8.93E−02
−0.280
1.00E+00
−0.119
1.00E+00
FALSE


Rlim
−0.306
8.95E−02
0.121
1.00E+00
−0.249
9.46E−01
FALSE


Gm17056
−0.239
8.96E−02
0.000
1.00E+00
0.080
1.00E+00
FALSE


Zdhhc16
0.279
8.96E−02
−0.225
1.00E+00
0.031
1.00E+00
FALSE


Kras
0.260
8.97E−02
0.619
9.15E−01
−0.045
1.00E+00
FALSE


Rnf7
0.268
8.97E−02
−0.266
1.00E+00
0.129
1.00E+00
FALSE


Casc4
0.109
8.97E−02
0.180
1.00E+00
−0.067
1.00E+00
FALSE


Ggt5
0.181
9.01E−02
0.333
1.00E+00
0.026
1.00E+00
FALSE


Cks1brt
−0.077
9.01E−02
0.000
1.00E+00
0.000
1.00E+00
FALSE


Taf1b
0.308
9.01E−02
−0.219
1.00E+00
0.114
1.00E+00
FALSE


Tmed10
−0.232
9.01E−02
−0.182
1.00E+00
−0.131
1.00E+00
FALSE


Eif4e3
0.323
9.01E−02
0.310
1.00E+00
0.201
1.00E+00
FALSE


Sh2d1a
0.280
9.01E−02
−0.024
1.00E+00
0.126
1.00E+00
FALSE


Brd2
−0.280
9.01E−02
−0.274
1.00E+00
−0.020
1.00E+00
FALSE


Ruben
−0.152
9.01E−02
0.058
1.00E+00
0.035
1.00E+00
FALSE


Arrdc1
0.297
9.01E−02
0.108
1.00E+00
0.098
1.00E+00
FALSE


Fam46a
−0.371
9.01E−02
−0.161
1.00E+00
0.079
1.00E+00
FALSE


Neat1
0.270
9.01E−02
0.623
9.15E−01
0.504
9.18E−02
FALSE


Mrps21
0.263
9.01E−02
−0.402
9.31E−01
0.113
1.00E+00
FALSE


5330426L24Rik
0.102
9.01E−02
0.169
1.00E+00
0.000
1.00E+00
FALSE


Aprt
0.225
9.01E−02
−0.208
1.00E+00
−0.072
1.00E+00
FALSE


Hivep2
0.311
9.01E−02
−0.315
1.00E+00
0.408
4.29E−01
FALSE


Commd8
0.258
9.01E−02
0.346
1.00E+00
0.158
1.00E+00
FALSE


Dcaf15
0.314
9.05E−02
−0.192
1.00E+00
0.250
8.20E−01
FALSE


Gm5426
0.146
9.14E−02
−0.126
1.00E+00
−0.044
1.00E+00
FALSE


Zfos1
0.253
9.20E−02
0.560
9.15E−01
−0.034
1.00E+00
FALSE


Htatsf1
−0.306
9.20E−02
0.455
9.15E−01
−0.208
9.77E−01
FALSE


Gmppa
0.080
9.31E−01
−0.438
9.96E−01
0.486
9.29E−02
FALSE


Acat2
−0.316
9.35E−02
0.199
1.00E+00
0.179
1.00E+00
FALSE


Abtb1
0.305
9.43E−02
−0.168
1.00E+00
0.284
7.36E−01
FALSE


Cers4
−0.066
1.00E+00
−1.014
9.45E−02
−0.577
1.21E−01
FALSE


Ranbp1
−0.239
9.48E−02
0.214
1.00E+00
−0.069
1.00E+00
FALSE


Rpl26
0.073
2.14E−01
0.036
1.00E+00
0.161
9.52E−02
FALSE


Mif4gd
0.264
9.63E−02
0.345
1.00E+00
0.042
1.00E+00
FALSE


Hspa9
−0.286
9.69E−02
0.368
1.00E+00
−0.011
1.00E+00
FALSE


Gpr15
−0.155
9.74E−02
−0.349
7.11E−01
0.053
1.00E+00
FALSE


Sprtn
−0.143
9.77E−02
0.000
1.00E+00
−0.093
1.00E+00
FALSE


Usp16
−0.308
9.85E−02
−0.380
1.00E+00
−0.080
1.00E+00
FALSE


Ptpn6
0.294
9.87E−02
0.292
1.00E+00
−0.008
1.00E+00
FALSE


Gm26532
−0.361
9.87E−02
0.102
1.00E+00
−0.009
1.00E+00
FALSE


Hba-a2
0.025
9.31E−01
0.062
1.00E+00
0.176
9.90E−02
FALSE


Sit1
−0.284
9.92E−02
0.223
1.00E+00
−0.047
1.00E+00
FALSE


Skil
−0.267
9.94E−02
0.407
1.00E+00
−0.085
1.00E+00
FALSE


Kat8
0.275
9.94E−02
0.712
4.66E−01
−0.165
9.89E−01
FALSE


Rhoh
−0.058
9.95E−01
−0.435
9.96E−01
−0.488
9.97E−02
FALSE
















TABLE 4





Table detailing the ranking procedure used to prioritize genes for follow-up study. Gathers, for each


gene, the final score used for ranking in addition to the component statistics used in computing this


score. Details on the formula used are provided in the methods section. The scores above 2 are shown.
























Final
In-Vivo
In-Vivo
In-Vitro






Gene
Score
Cluster
Tissue
Summary
GWAS?
LPL-9_logFC
LPL-9_FDR
LPL-9_Geno_logFC





Gpr18
6.04
0.87
0.96
1.34
1
0.05
9.16E−01
−1.21


Gzmb
5.33
0.74
1.73
2.11
0
−0.18
8.28E−01
−0.31


Itgb1
5.07
1.75
0.00
1.57
0
−0.52
1.23E−01
0.62


Ccr3
5.00
0.00
0.00
3.00
1
0.02
9.16E−01
−0.06


Gzma
5.00
1.73
1.55
0.00
0
1.65
1.07E−14
−2.92


Il22
4.80
0.00
2.00
2.80
0
−1.98
6.26E−05
0.12


Zfp36l2
4.80
0.76
1.28
0.00
1
−0.51
3.71E−03
−1.28


Zbtb38
4.72
0.30
0.21
1.90
1
0.61
1.07E−03
−0.38


Cd74
4.58
0.29
0.47
1.53
1
−0.71
3.68E−02
0.39


Ccr5
4.55
0.70
1.14
0.00
1
−0.01
9.77E−01
−0.29


Cd160
4.15
1.39
1.38
0.00
0
2.21
8.92E−39
−1.39


Map3k8
4.11
0.27
1.57
0.00
1
−1.07
1.04E−07
−0.05


Tnfsf8
4.00
0.00
2.00
0.00
1
−2.58
3.47E−29
0.92


Ifitm1
4.00
2.00
0.00
0.00
0
0.42
7.73E−01
0.06


Nfkbiz
4.00
0.00
2.00
0.00
1
−1.84
5.04E−26
0.00


Fosl2
4.00
0.00
2.00
0.00
1
−2.22
2.11E−28
−0.04


Crem
4.00
0.00
2.00
0.00
1
−2.64
3.66E−42
0.29


Ccdc85b
4.00
0.24
0.31
1.20
1
0.49
5.14E−03
0.25


Fos
3.94
0.00
1.94
0.00
1
−0.39
3.85E−01
0.88


Gpr183
3.77
0.21
1.35
0.00
1
−1.70
2.41E−24
−0.09


S100a4
3.76
1.53
0.71
0.00
0
0.21
5.67E−01
−0.64


1110008f13rik
3.63
0.32
0.00
3.00
0
−0.24
3.26E−01
−0.22


Lsp1
3.63
0.61
0.41
0.00
1
0.54
2.06E−11
0.01


Litaf
3.61
0.00
1.61
0.00
1
−0.08
9.16E−01
−0.60


Cd7
3.60
1.10
1.40
0.00
0
1.84
6.17E−25
−1.93


Dusp2
3.59
0.36
0.42
2.46
0
0.71
8.19E−05
−1.01


Plac8
3.59
1.00
1.58
0.00
0
−0.08
9.16E−01
−0.89


H1f0
3.56
0.57
0.75
1.67

0.24
5.20E−01
0.55


S1pr1
3.56
0.88
0.42
1.37
0
−0.16
8.29E−01
−0.60


Ncf4
3.53
0.62
0.29
0.00
1
0.30
2.08E−01
0.21


Smim3
3.46
0.00
1.46
0.00
1
−0.48
4.13E−02
−0.11


Tesc
3.43
0.00
0.47
2.96
0
0.01
9.59E−01
−0.05


Rbms1
3.39
0.29
0.18
2.64
0
0.00
9.81E−01
−0.27


Lpxn
3.39
0.21
0.97
0.00
1
−0.02
9.16E−01
−0.25


Tnfrsf9
3.37
0.00
1.37
0.00
1
−1.43
4.83E−10
0.51


Pmm1
3.37
0.14
0.15
0.95
1
0.16
7.88E−01
−0.41


Tob2
3.32
0.00
1.32
0.00
1
−1.09
4.21E−08
0.30


Ifng
3.32
0.00
1.69
1.63
0
−1.20
7.19E−06
0.66


Cd226
3.32
0.55
0.23
0.00
1
1.09
1.32E−13
−0.19


Ctsw
3.28
0.47
0.35
0.00
1
0.93
3.13E−26
−0.23


Itga4
3.26
0.41
0.44
0.00
1
0.25
3.38E−01
−0.60


Cd28
3.23
0.08
1.08
0.00
1
−1.13
4.90E−26
−0.16


Klf2
3.21
1.25
0.71
0.00
0
−0.39
2.50E−01
−1.19


Ly6c2
3.19
1.60
0.00
0.00
0
−0.73
1.12E−01
−0.47


Ccr9
3.19
1.11
0.97
0.00
0
1.55
7.75E−14
−2.22


Ets1
3.19
0.16
0.87
0.00
1
−0.57
2.15E−09
0.03


Il7r
3.19
0.35
0.48
0.00
1
0.43
2.27E−03
−0.54


Ptpn22
3.18
0.00
1.18
0.00
1
−0.69
1.93E−09
−0.57


Gm12840
3.17
0.59
2.00
0.00
0
−1.43
4.99E−14
−0.09


Zfp36l1
3.17
0.00
1.17
0.00
1
−0.78
3.31E−05
−0.69


Atxn2l
3.17
0.00
0.07
1.10
1
−0.12
8.69E−01
−0.04


Pde4b
3.17
0.00
2.00
1.17
0
−1.76
8.34E−28
−0.20


Selp
3.16
0.00
0.00
1.16
1
0.00
9.16E−01
0.00


Anxa6
3.16
0.48
0.20
0.00
1
0.30
2.42E−02
0.22


Peli1
3.14
0.00
0.92
2.22
0
−1.00
7.94E−13
0.23


Odc1
3.12
0.00
2.00
1.12
0
−2.92
6.12E−65
0.23


Pglyrp1
3.12
1.21
0.70
0.00
0
0.12
8.90E−01
−0.30


Pim3
3.12
0.00
1.12
0.00
1
−1.08
4.71E−07
0.03


Pim1
3.11
0.56
2.00
0.00
0
−1.85
2.32E−50
−1.11


Mt1
3.08
0.69
0.65
1.06
0
−0.74
9.16E−03
−0.32


Stat3
3.08
0.00
1.08
0.00
1
−0.85
1.15E−07
0.28


Stat5a
3.07
0.00
0.47
0.60
1
−0.41
9.10E−02
−0.12


Vmp1
3.05
0.27
0.51
0.00
1
−0.11
8.77E−01
−0.82


Ier2
3.05
0.21
0.43
2.19
0
−0.98
4.39E−12
−0.26


Tnip1
3.02
0.13
0.77
0.00
1
−0.88
1.43E−06
0.41


Timp1
3.00
0.00
0.00
3.00
0
0.00
9.16E−01
0.00


Amdhd1
3.00
0.00
0.00
3.00
0
−0.03
7.89E−01
0.00


Rora
2.99
0.12
1.63
1.12
0
−1.51
6.78E−27
0.19


Gm5111
2.99
0.00
0.02
2.97
0
0.04
7.22E−01
−0.06


Fermt3
2.99
0.31
0.36
0.00
1
0.41
1.78E−02
−0.04


Dap
2.96
0.34
0.28
0.00
1
0.06
9.16E−01
−0.72


Hist1h1c
2.94
0.52
1.90
0.00
0
−1.01
9.38E−06
0.17


Cfl1
2.93
0.21
0.14
0.38
1
0.41
1.20E−13
0.33


Ipmk
2.92
0.00
0.92
0.00
1
−0.84
4.49E−05
−0.25


Klrd1
2.90
1.28
0.34
0.00
0
0.21
6.79E−01
1.08


Gfi1
2.89
0.40
0.09
0.00
1
0.81
5.66E−07
−0.52


S100a6
2.89
1.20
0.50
0.00
0
0.44
3.37E−04
0.25


Rorc
2.89
0.00
0.07
0.82
1
0.05
9.16E−01
0.05


Stat4
2.87
0.00
0.87
0.00
1
−0.54
2.67E−03
0.11


Fdps
2.86
0.36
0.15
0.00
1
0.71
7.75E−05
−0.21


Gpr65
2.86
0.00
0.86
0.00
1
−0.53
2.06E−02
−0.36


Rapgef6
2.85
0.22
0.41
0.00
1
0.44
1.06E−02
−0.40


Tmem160
2.84
0.27
0.20
2.12
0
0.16
4.72E−01
0.20


Rasgrp1
2.84
0.00
0.84
0.00
1
−0.60
1.41E−03
−0.39


Pnkd
2.83
0.31
0.21
0.00
1
0.63
1.17E−04
−0.58


Ccnd3
2.82
0.41
0.00
0.00
1
0.58
9.30E−06
0.30


Panx1
2.82
0.20
0.00
2.42
0
−0.11
9.10E−01
0.22


Thap11
2.81
0.31
0.13
2.06
0
0.62
2.48E−04
−0.56


Lysmd2
2.80
0.34
0.25
1.86
0
0.26
4.08E−01
−0.14


Ubac2
2.80
0.25
0.29
0.00
1
0.51
7.50E−04
−0.24


Lgals3
2.79
1.40
0.00
0.00
0
−0.27
2.98E−01
0.46


Cyb5r4
2.78
0.32
0.29
1.86
0
0.22
4.11E−01
0.13


Upf3a
2.78
0.39
0.34
1.66
0
0.22
5.09E−01
0.13


Gm10076
2.78
1.04
0.69
0.00
0
0.07
9.16E−01
−0.36


Ccdc69
2.77
0.30
0.18
0.00
1
0.59
2.73E−04
−0.40


Ccl5
2.76
1.13
0.50
0.00
0
0.92
7.28E−10
−1.43


Gramd3
2.75
0.42
1.92
0.00
0
−2.80
1.99E−64
−0.50


Errfi1
2.75
0.00
0.75
0.00
1
−0.85
6.10E−05
0.00


Itgae
2.75
0.86
1.03
0.00
0
1.72
6.36E−26
−1.44


Il2ra
2.74
0.00
0.74
0.00
1
−0.71
7.84E−04
−0.03


Gpx4
2.72
0.00
0.72
0.00
1
−0.61
3.04E−08
0.17


Ndfip1
2.72
0.00
0.72
0.00
1
−1.00
1.29E−12
−0.02


Syt11
2.72
0.31
0.11
0.00
1
0.61
6.33E−04
−0.13


Dph5
2.71
0.00
0.00
0.71
1
−0.34
1.73E−01
0.43


Slc39a8
2.70
0.00
0.08
0.62
1
0.25
2.07E−01
0.49


Rnf187
2.69
0.00
0.00
2.69
0
−0.03
9.16E−01
−0.04


Fam53b
2.68
0.27
0.14
0.00
1
0.54
4.97E−03
−0.40


Prdx5
2.68
0.15
0.37
0.00
1
0.30
3.27E−02
0.36


Ccrl2
2.67
0.00
0.67
0.00
1
−0.50
4.03E−02
0.57


Ep300
2.67
0.00
0.00
0.67
1
−0.02
9.22E−01
−0.09


Hdac7
2.66
0.28
0.10
0.00
1
0.19
5.54E−01
−0.17


Cd6
2.66
0.23
0.21
0.00
1
0.16
4.22E−01
0.22


Traf3ip2
2.66
0.29
0.09
0.00
1
−0.01
9.79E−01
−0.46


Gnb2
2.66
0.20
0.25
0.00
1
0.14
4.84E−01
0.28


Tet2
2.66
0.00
0.66
0.00
1
−0.33
2.15E−01
0.29


Fam189b
2.66
0.33
0.00
0.00
1
0.66
1.50E−05
−0.30


Skap2
2.65
0.26
0.13
0.00
1
0.53
4.39E−03
0.03


Lgals1
2.64
1.11
0.17
0.25
0
0.03
9.16E−01
0.37


Socs1
2.64
0.00
0.64
0.00
1
−1.20
3.60E−09
0.36


Itgav
2.64
0.00
0.64
0.00
1
−0.46
5.45E−02
−0.44


Dnajb4
2.63
0.00
0.63
0.00
1
−0.35
2.20E−01
0.13


Cdkn1a
2.63
0.00
2.00
0.63
0
−1.97
4.97E−22
0.16


Arhgef2
2.62
0.20
0.23
0.00
1
0.40
5.38E−02
0.01


Dnmt3a
2.62
0.26
0.11
0.00
1
0.51
2.67E−03
−0.34


Jund
2.61
0.00
2.00
0.61
0
−1.56
1.41E−54
0.96


Scamp3
2.61
0.19
0.23
0.00
1
0.38
2.05E−02
−0.28


Tmem30a
2.61
0.35
0.35
1.55
0
0.22
3.63E−01
−0.73


Ash1l
2.60
0.30
0.00
0.00
1
0.60
6.06E−04
−0.13


Lsm14a
2.60
0.17
0.26
0.00
1
0.34
7.25E−02
−0.04


Slain2
2.60
0.00
0.00
0.60
1
−0.16
7.57E−01
0.25


Muc1
2.60
0.11
0.38
0.00
1
−0.31
1.19E−01
−0.12


Adamts14
2.59
0.00
0.00
2.59
0
0.00
9.16E−01
0.00


Ptk2b
2.59
0.25
0.09
0.00
1
0.50
3.11E−03
0.23


Stk11
2.59
0.00
0.59
0.00
1
−0.38
7.50E−02
−0.01


Ccr2
2.58
0.17
0.23
0.00
1
−0.82
5.53E−07
0.19


Itgal
2.57
0.23
0.11
0.00
1
0.47
4.68E−03
−0.85


Elf1
2.57
0.00
0.57
0.00
1
−0.12
8.01E−01
−0.44


Ptprc
2.57
0.20
0.16
0.00
1
0.05
9.16E−01
−0.26


Rbx1
2.56
0.21
0.14
0.00
1
0.42
4.59E−05
0.23


Traf3ip3
2.56
0.44
0.45
1.23
0
0.79
1.50E−07
−0.46


Ccdc88b
2.55
0.24
0.08
0.00
1
0.48
1.39E−02
−0.36


Tsen34
2.55
0.23
0.00
2.09
0
0.46
2.92E−03
−0.30


Ay036118
2.54
1.15
0.25
0.00
0
−0.70
9.08E−04
0.26


Il24
2.54
0.00
0.00
2.54
0


H2-q10
2.54
0.00
0.06
2.48
0
−0.40
9.22E−02
−0.05


Scand1
2.54
0.16
0.38
1.83
0
0.11
7.40E−01
−0.08


Tab2
2.54
0.14
0.26
0.00
1
0.14
7.87E−01
0.31


Nfkb1
2.53
0.00
0.53
0.00
1
−0.80
1.07E−06
0.41


Rusc1
2.51
0.20
0.11
0.00
1
0.40
5.20E−02
−0.38


Esyt1
2.51
0.48
0.24
1.32
0
0.50
2.99E−03
0.14


Commd7
2.51
0.21
0.08
0.00
1
0.42
1.69E−02
0.43


Rfng
2.50
0.21
0.14
1.94
0
0.42
1.91E−02
−0.41


Rpl27-ps3
2.50
1.05
0.40
0.00
0
−0.39
1.47E−02
−0.81


Gigyf1
2.50
0.25
0.00
0.00
1
0.50
3.73E−03
0.04


Rgcc
2.49
0.00
1.58
0.92
0
−2.01
3.98E−17
0.81


Rpl3
2.49
0.15
0.19
0.00
1
0.03
8.98E−01
−0.17


Mrpl20
2.49
0.16
0.16
0.00
1
−0.12
8.00E−01
−0.15


Gm2a
2.48
0.15
0.18
0.00
1
0.30
9.19E−02
0.11


Mus81
2.47
0.17
0.13
0.00
1
0.34
6.54E−02
−0.25


Lpp
2.47
0.00
0.00
0.47
1
0.02
9.32E−01
0.11


Chp1
2.47
0.16
0.14
0.00
1
0.24
3.53E−01
−0.58


Mob4
2.46
0.11
0.24
0.00
1
−0.16
6.52E−01
−0.20


Lamp1
2.46
0.00
0.08
2.38
0
0.17
5.79E−01
−0.15


Phf5a
2.46
0.16
0.14
0.00
1
−0.18
5.90E−01
−0.06


Fnip1
2.46
0.11
0.25
0.00
1
−0.35
5.02E−02
0.12


Calm3
2.45
0.19
0.07
0.00
1
0.38
3.36E−03
0.27


Lrp10
2.45
0.21
0.20
1.82
0
0.43
9.66E−03
0.00


Stat5b
2.45
0.00
0.45
0.00
1
−0.42
7.05E−02
−0.17


Bach2
2.45
0.00
0.00
0.45
1
−0.19
9.99E−02
0.00


Prkab1
2.44
0.22
0.00
0.00
1
0.44
1.85E−02
−0.07


Hvcn1
2.44
0.39
0.00
1.65
0
0.79
3.23E−07
−0.51


Tmem150a
2.44
0.00
0.00
2.44
0
−0.01
9.16E−01
0.00


Nfkbia
2.44
0.22
2.00
0.00
0
−2.00
6.41E−52
0.23


Ifitm3
2.43
1.07
0.28
0.00
0
−0.15
8.69E−01
−0.26


Egfp_ires_il23r
2.43
0.00
0.00
2.43
0


Bad
2.43
0.15
0.13
0.00
1
0.25
3.65E−01
−0.14


Zbtb46
2.42
0.10
0.21
0.00
1
−0.24
4.01E−02
0.00


Cacna1s
2.42
0.00
0.10
0.32
1
−0.02
9.16E−01
0.12


Vamp3
2.42
0.15
0.11
0.00
1
−0.12
8.75E−01
−0.20


Fyn
2.41
0.21
0.00
0.00
1
0.41
6.91E−03
0.01


Stx6
2.41
0.00
0.29
2.12
0
−0.54
9.36E−03
0.33


Ikzf3
2.41
0.00
0.41
0.00
1
0.03
9.16E−01
0.01


Mgat2
2.41
0.17
0.00
2.07
0
−0.13
7.90E−01
0.01


Serpinb9
2.41
0.35
1.70
0.00
0
−2.27
2.37E−29
0.48


Dennd1b
2.41
0.20
0.00
0.00
1
0.41
4.95E−02
0.56


Bloc1s4
2.40
0.00
0.27
2.13
0
−0.32
2.26E−01
0.29


Anxa1
2.40
1.20
0.00
0.00
0
−0.39
2.24E−01
0.51


Smad3
2.39
0.15
0.10
0.00
1
−0.17
6.80E−01
−0.20


Tmem258
2.39
0.16
0.08
0.00
1
0.31
1.20E−02
−0.15


Lmna
2.39
0.20
1.99
0.00
0
−2.18
3.54E−21
1.52


Sp140
2.38
0.15
0.09
0.00
1
0.07
9.16E−01
−0.07


Actn2
2.38
0.56
1.25
0.00
0
0.97
1.90E−11
−0.17


Acbd6
2.38
0.00
0.22
2.16
0
−0.20
5.59E−01
−0.03


Ahnak
2.38
0.50
0.16
1.22
0
−0.68
6.25E−06
−0.15


Arpc2
2.37
0.16
0.06
0.00
1
−0.21
6.08E−03
0.10


Erp29
2.37
0.19
0.00
0.00
1
0.09
9.16E−01
−0.38


Nhp2l1
2.37
0.00
0.37
0.00
1
−0.78
2.02E−09
0.23


Ctbp1
2.36
0.35
0.32
1.34
0
−0.18
5.38E−01
−0.18


Gba
2.36
0.11
0.13
0.00
1
0.19
5.83E−01
−0.11


Lztfl1
2.35
0.56
1.24
0.00
0
0.50
7.25E−03
−0.48


Ptpn2
2.35
0.00
0.35
0.00
1
−0.50
1.46E−02
0.14


Usp36
2.35
0.00
0.35
0.00
1
−0.33
2.19E−01
0.35


Grb7
2.34
0.00
0.34
0.00
1
−0.23
3.56E−01
0.28


Fndc3a
2.34
0.00
0.34
0.00
1
−0.27
3.66E−01
0.38


Mt2
2.33
0.41
0.21
1.32
0
−0.12
9.16E−01
−0.21


Dctn4
2.33
0.00
0.33
0.00
1
−0.13
8.69E−01
−0.49


Nusap1
2.33
0.00
0.33
0.00
1
−0.47
2.85E−02
−0.06


Rbm22
2.33
0.16
0.00
0.00
1
0.31
1.24E−01
−0.08


Crip1
2.32
1.16
0.00
0.00
0
−0.16
4.44E−01
0.13


Anp32b
2.32
0.00
0.19
2.13
0
−0.03
9.16E−01
0.09


Aurkaip1
2.31
0.16
0.00
0.00
1
0.31
4.66E−02
0.23


Ripk2
2.31
0.21
0.36
1.53
0
−0.31
2.52E−01
−0.29


Nubp1
2.31
0.12
0.37
1.70
0
0.05
9.16E−01
−0.11


Camta1
2.31
0.00
0.31
0.00
1
0.15
7.66E−01
0.04


Ube2j2
2.30
0.00
0.30
0.00
1
−0.51
1.26E−03
−0.09


Kif3b
2.30
0.00
0.00
0.30
1
0.21
2.31E−01
0.43


Brap
2.30
0.00
0.30
0.00
1
−0.36
1.42E−01
−0.02


Gm8096
2.30
0.00
0.00
2.30
0


Ermn
2.30
0.00
1.01
1.29
0
−0.82
2.08E−03
0.18


Plagl2
2.29
0.00
0.00
0.29
1
0.11
8.12E−01
−0.24


Plek
2.29
0.44
0.00
1.42
0
−0.17
7.62E−01
−0.02


D030056l22rik
2.29
0.00
0.23
2.06
0
−0.22
5.63E−01
0.12


Ccr1
2.28
0.00
0.28
0.00
1
−0.25
3.19E−01
0.33


Krtcap2
2.28
0.14
0.00
0.00
1
0.15
2.54E−01
0.68


Sh2b1
2.28
0.00
0.28
0.00
1
0.00
9.89E−01
0.10


Abi3
2.27
0.65
0.97
0.00
0
1.31
2.58E−20
−0.41


Ccnl2
2.27
0.00
0.27
0.00
1
−0.11
8.44E−01
−0.32


Kbtbd7
2.27
0.14
0.00
0.00
1
0.27
3.02E−02
0.32


Csf2
2.27
0.00
0.27
0.00
1
−0.27
4.91E−01
0.12


Pycard
2.27
0.82
0.63
0.00
0
0.67
2.06E−07
−0.41


Dock7
2.27
0.00
0.00
0.27
1
0.00
9.16E−01
0.00


Herpud1
2.26
0.00
1.16
1.10
0
−1.41
4.94E−17
−0.99


Arf6
2.26
0.12
0.39
1.63
0
−0.07
8.95E−01
−0.09


Zyx
2.26
0.87
0.52
0.00
0
0.34
1.46E−01
−0.27


Zfp91
2.25
0.00
0.25
0.00
1
−0.19
6.33E−01
0.28


Fam171b
2.25
0.13
0.00
0.00
1
0.25
6.60E−03
−0.05


Maml2
2.25
0.12
0.00
0.00
1
0.28
3.01E−01
0.08


Ifngr2
2.24
0.00
0.24
0.00
1
−0.35
7.19E−03
0.00


Bhlhe40
2.24
0.12
2.00
0.00
0
−2.05
5.44E−83
−0.58


Cisd1
2.23
0.00
0.23
0.00
1
0.29
2.94E−01
0.39


Zfp420
2.22
0.00
0.00
2.22
0
0.05
9.16E−01
0.32


Zc3h12a
2.22
0.11
2.00
0.00
0
−1.90
3.03E−26
0.20


Plcg2
2.22
0.08
0.05
0.00
1
0.14
3.14E−01
−0.27


2310036o22rik
2.21
0.00
0.13
2.09
0
0.10
8.00E−01
0.13


Eif3c
2.21
0.11
0.00
0.00
1
−0.03
9.16E−01
0.00


Slc15a3
2.21
0.00
0.52
1.69
0
−0.62
2.28E−03
−0.01


Acap3
2.21
0.10
0.00
0.00
1
0.14
7.00E−01
0.20


Tef
2.21
0.00
0.21
0.00
1
−0.20
4.12E−01
0.03


Emp3
2.20
0.93
0.34
0.00
0
0.17
4.01E−01
−0.30


Ssr2
2.20
0.00
0.20
0.00
1
−0.02
9.16E−01
−0.24


Usp1
2.19
0.00
0.19
0.00
1
0.05
9.16E−01
0.13


Rpl10-ps3
2.18
0.89
0.40
0.00
0
−0.20
4.07E−01
−0.22


Plcxd2
2.18
0.42
1.34
0.00
0
−0.89
1.41E−05
−0.23


Adcy7
2.18
0.00
0.18
0.00
1
0.18
6.40E−01
−0.04


Irf1
2.18
0.00
0.18
0.00
1
0.00
9.81E−01
−0.14


Aamp
2.17
0.00
0.17
0.00
1
−0.08
9.16E−01
0.39


Gm8730
2.17
0.78
0.61
0.00
0
0.03
9.16E−01
−0.97


Zgpat
2.17
0.00
0.17
0.00
1
0.23
4.47E−01
−0.28


St13
2.17
0.00
0.17
0.00
1
0.03
9.16E−01
−0.54


Cdc42se2
2.17
0.00
0.17
0.00
1
−0.02
9.36E−01
−0.44


Anxa2
2.16
0.69
0.00
0.77
0
−0.14
6.71E−01
0.46


Cpsf3l
2.16
0.00
0.16
0.00
1
0.30
2.53E−01
0.25


Gm2000
2.15
0.84
0.47
0.00
0
−0.16
5.62E−01
−0.56


Trim46
2.15
0.08
0.00
0.00
1
0.00
9.76E−01
−0.12


Dusp16
2.15
0.00
0.15
0.00
1
−0.16
1.48E−01
0.00


Zmat5
2.15
0.00
0.15
0.00
1
0.30
1.96E−01
0.39


Ptprk
2.15
0.00
0.15
0.00
1
0.17
6.28E−01
−0.02


Zdhhc7
2.15
0.15
0.00
1.85
0
0.14
7.96E−01
0.64


Il2
2.14
0.00
0.14
0.00
1
0.21
6.26E−01
0.62


Msto1
2.14
0.00
0.14
0.00
1
0.22
3.66E−01
0.22


Il10
2.14
0.00
0.14
0.00
1
−0.26
1.52E−01
0.00


Sbno2
2.14
0.00
0.14
0.00
1
−0.14
4.66E−01
−0.06


Snx17
2.14
0.00
0.14
0.00
1
0.15
7.29E−01
0.11


Kif11
2.14
0.00
0.14
0.00
1
−0.14
3.28E−01
−0.06


Ndfip2
2.13
0.00
0.08
2.05
0
−0.02
9.43E−01
−0.19


Card9
2.13
0.07
0.00
0.00
1
0.13
1.78E−02
0.26


Lsm4
2.13
0.15
0.25
1.59
0
0.29
4.77E−02
0.35


Ormdl3
2.13
0.00
0.13
0.00
1
−0.22
5.67E−01
−0.44


S100a10
2.13
0.71
0.00
0.70
0
0.24
4.32E−03
0.34


Notch2
2.13
0.00
0.13
0.00
1
0.28
3.07E−01
−0.29


Senp7
2.12
0.00
0.12
0.00
1
0.27
2.72E−01
−0.03


Cd48
2.12
0.80
0.52
0.00
0
1.09
4.17E−26
−0.11


Ssbp4
2.12
0.13
0.26
1.61
0
0.12
7.93E−01
0.07


Cul1
2.12
0.00
0.12
0.00
1
−0.24
4.52E−01
0.14


Mettl10
2.12
0.00
0.12
0.00
1
0.32
1.67E−01
0.29


Rabep2
2.11
0.00
0.11
0.00
1
0.25
3.59E−01
0.27


Pkig
2.11
0.00
0.11
0.00
1
−0.11
7.47E−01
0.45


Desi1
2.11
0.00
0.11
0.00
1
−0.05
9.16E−01
−0.44


Furin
2.11
0.00
2.00
0.11
0
−1.32
2.08E−16
0.82


Tcof1
2.11
0.00
0.11
0.00
1
0.16
7.20E−01
−0.17


Glipr2
2.11
0.84
0.43
0.00
0
0.28
1.81E−01
−0.10


Tgfbr3
2.11
0.00
0.11
0.00
1
−0.12
6.95E−01
−0.12


Tyk2
2.10
0.00
0.10
0.00
1
0.24
2.94E−01
−0.66


Kif21b
2.10
0.00
0.10
0.00
1
0.32
1.73E−01
0.12


Tufm
2.10
0.00
0.10
0.00
1
0.25
3.89E−01
−0.14


Zmiz1
2.10
0.00
0.10
0.00
1
0.04
9.16E−01
−0.32


Il21
2.10
0.00
0.10
0.00
1
−0.08
8.15E−01
−0.06


Ttpal
2.10
0.00
0.10
0.00
1
0.05
9.16E−01
−0.33


Rps6kb1
2.10
0.00
0.10
0.00
1
−0.15
7.63E−01
−0.71


Camk2g
2.10
0.00
0.10
0.00
1
0.07
9.16E−01
0.16


Tom1
2.10
0.00
0.10
0.00
1
0.20
4.19E−01
−0.14


Actr1a
2.10
0.00
0.10
0.00
1
0.15
7.74E−01
−0.30


Rgs14
2.10
0.00
0.10
0.00
1
−0.03
9.16E−01
−0.10


Ublcp1
2.10
0.00
0.10
0.00
1
−0.04
9.16E−01
0.10


Otud3
2.09
0.00
0.09
0.00
1
0.01
9.56E−01
0.22


Tmem180
2.09
0.00
0.09
0.00
1
−0.03
9.16E−01
−0.27


Ergic1
2.09
0.00
0.09
0.00
1
0.02
9.53E−01
−0.05


Aa467197
2.09
0.97
0.16
0.00
0
0.42
4.68E−02
−0.01


Tdp2
2.09
0.00
0.25
1.84
0
−0.56
1.00E−02
0.04


Rac1
2.09
0.07
0.06
1.88
0
−0.22
1.23E−01
0.22


Phlda3
2.09
0.00
0.00
2.09
0
−0.08
9.16E−01
0.12


Trmt112
2.09
0.00
0.09
0.00
1
0.13
6.94E−01
−0.19


Ccny
2.08
0.00
0.08
0.00
1
−0.18
6.57E−01
−0.22


Slc43a3
2.08
0.00
0.08
0.00
1
0.03
9.16E−01
−0.32


Ezh2
2.08
0.00
0.08
0.00
1
−0.30
2.75E−01
−0.19


Rps14
2.08
0.00
0.08
0.00
1
−0.06
2.70E−01
0.00


Spred2
2.08
0.00
0.08
0.00
1
−0.13
6.12E−01
0.12


Rn7s2
2.08
0.00
0.00
2.08
0


Rn7s1
2.08
0.00
0.00
2.08
0


Rpap2
2.08
0.00
0.08
0.00
1
0.19
4.73E−01
0.10


Cit
2.08
0.00
0.08
0.00
1
−0.08
8.92E−01
−0.16


Ascc2
2.08
0.00
0.08
0.00
1
0.01
9.56E−01
−0.15


Ksr1
2.08
0.00
0.08
0.00
1
−0.02
9.16E−01
−0.18


Edem2
2.08
0.00
0.08
0.00
1
0.35
1.30E−01
−0.12


Blzf1
2.08
0.00
0.08
0.00
1
−0.04
9.16E−01
0.00


Ppp5c
2.08
0.00
0.08
0.00
1
0.22
4.78E−01
−0.09


Smurf1
2.08
0.00
0.08
0.00
1
−0.17
3.56E−01
0.18


Nop9
2.08
0.00
0.08
2.00
0
−0.23
4.77E−01
0.05


Slc30a7
2.08
0.00
0.08
0.00
1
0.07
9.16E−01
−0.29


Tnfrsf8
2.08
0.00
0.00
2.08
0
−0.04
6.49E−01
0.00


Adcy3
2.08
0.00
0.08
0.00
1
0.14
6.08E−01
−0.10


Pdcd1
2.07
0.00
0.00
2.07
0
−0.01
9.93E−01
0.18


Fen1
2.07
0.00
0.07
0.00
1
−0.19
5.90E−01
−0.08


Themis
2.07
0.00
0.07
0.00
1
0.21
4.38E−01
−0.47


Nudt22
2.07
0.00
0.07
0.00
1
0.28
2.11E−01
−0.10


Cyth1
2.07
0.00
0.07
0.00
1
−0.12
8.69E−01
0.11


Tmbim1
2.07
0.00
0.07
0.00
1
0.00
9.82E−01
0.35


Ndufaf1
2.07
0.00
0.07
0.00
1
0.24
3.44E−01
0.13


Klrc1
2.07
0.87
0.33
0.00
0
−1.21
7.84E−09
0.71


Pomc
2.07
0.00
0.07
0.00
1
−0.07
8.21E−01
0.17


Cpeb4
2.07
0.00
0.07
0.00
1
0.06
9.16E−01
0.41


Cul2
2.07
0.00
0.07
0.00
1
−0.03
9.16E−01
0.19


Hgfac
2.07
0.03
0.00
0.00
1
−0.02
9.09E−01
0.00


Pofut1
2.07
0.00
0.07
0.00
1
0.16
5.63E−01
−0.20


Clasp2
2.07
0.00
0.06
2.00
0
0.08
9.16E−01
−0.05


Nme7
2.06
0.00
0.06
0.00
1
0.16
4.96E−01
0.66


Ndst1
2.06
0.00
0.06
0.00
1
−0.11
2.93E−01
0.00


Gpr137
2.06
0.00
0.06
0.00
1
0.01
9.61E−01
−0.18


Ncoa5
2.06
0.00
0.06
0.00
1
0.24
3.02E−01
−0.10


Mapkapk5
2.06
0.00
0.06
0.00
1
−0.10
6.31E−01
−0.06


Auh
2.05
0.00
0.05
0.00
1
0.16
7.47E−01
−0.32


Gpx3
2.05
0.00
0.05
0.00
1
−0.06
5.82E−01
0.00


Tmem116
2.05
0.03
0.00
0.00
1
−0.01
9.16E−01
0.00


Hint1
2.05
0.00
0.05
0.00
1
−0.11
5.88E−01
−0.01


Mtmr3
2.05
0.00
0.05
0.00
1
−0.04
9.16E−01
−0.20


Ube2l3
2.05
0.00
0.05
0.00
1
0.06
9.16E−01
0.13


Il23r
2.05
0.00
0.05
0.00
1
0.01
9.16E−01
−0.07


Asb2
2.05
0.46
1.12
0.00
0
0.93
8.67E−11
0.94


Snx32
2.05
0.00
0.05
0.00
1
0.15
3.44E−01
0.02


Fgfr1op
2.04
0.00
0.04
0.00
1
−0.14
6.79E−01
0.01


Ccl2
2.04
0.00
0.04
0.00
1
−0.04
7.20E−01
0.00


Slc16a10
2.04
0.00
0.04
0.00
1
0.04
9.16E−01
−0.12


Batf
2.04
0.19
0.76
0.90
0
−0.99
1.85E−09
−0.11


Trpt1
2.04
0.00
0.04
0.00
1
0.09
7.33E−01
0.28


Jazf1
2.04
0.00
0.04
0.00
1
−0.11
2.74E−01
0.00


Tubd1
2.04
0.00
0.04
0.00
1
−0.01
9.16E−01
−0.06


Rtel1
2.04
0.00
0.04
0.00
1
0.11
6.34E−01
0.22


Srm
2.04
0.00
0.08
1.96
0
−0.02
9.16E−01
−0.37


Thada
2.03
0.00
0.03
0.00
1
−0.09
8.72E−01
0.43


Tppp
2.03
0.00
0.03
0.00
1
0.02
9.16E−01
0.18


Ppp4c
2.03
0.16
0.24
1.47
0
0.12
6.55E−01
−0.24


Per3
2.03
0.00
0.03
0.00
1
0.09
7.22E−01
0.05


Hormad2
2.03
0.00
0.03
0.00
1
−0.04
6.91E−01
0.00


Gm20186
2.03
0.45
1.13
0.00
0
−1.00
1.94E−06
0.19


Ccdc122
2.02
0.00
0.02
0.00
1
0.05
7.03E−01
−0.06


Fasl
2.02
0.19
1.65
0.00
0
−1.32
8.53E−15
−0.45


Sh2d2a
2.02
0.24
1.54
0.00
0
−0.82
1.67E−09
−0.73


Atp6v0a1
2.02
0.00
0.02
0.00
1
−0.03
8.25E−01
0.00


Fosl1
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Itgb8
2.01
0.00
0.01
0.00
1
−0.02
9.16E−01
0.00


Amz1
2.01
0.00
0.01
0.00
1
0.05
6.82E−01
0.15


Cxcl5
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Nkx2-3
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Thbs3
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Pf4
2.01
0.00
0.01
0.00
1
0.03
8.56E−01
−0.06


Ephx4
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Osmr
2.01
0.00
0.01
0.00
1
0.00
9.16E−01
0.00


Ccl11
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Fndc4
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Ccl7
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Ptrf
2.01
0.00
0.01
0.00
1
−0.01
9.16E−01
0.00


Mei1
2.00
0.00
0.00
0.00
1
0.00
9.16E−01
0.00


Lamb1
2.00
0.00
0.00
0.00
1
0.00
9.16E−01
0.00















Gene
LPL-9_Geno_FDR
LPL-2_logFC
LPL-2_FDR
LPL-2_Geno_logFC
LPL-2_Geno_FDR





Gpr18
8.21E−02
0.30
2.12E−06
−0.87
1.82E−10


Gzmb
1.00E+00
0.46
9.03E−09
−0.74
1.86E−06


Itgb1
8.72E−01
1.75
 1.74E−200
0.47
8.89E−03


Ccr3
1.00E+00
0.00
8.83E−01
0.02
9.32E−01


Gzma
2.40E−10
1.16
4.89E−41
−1.73
5.05E−18


Il22
1.00E+00
−1.76
3.12E−27
0.80
2.21E−06


Zfp36l2
6.35E−03
0.22
9.29E−06
−0.76
2.01E−14


Zbtb38
1.00E+00
−0.09
3.49E−01
−0.17
5.91E−01


Cd74
1.00E+00
0.29
3.04E−03
0.49
3.79E−02


Ccr5
1.00E+00
−0.08
4.32E−01
−0.70
1.48E−08


Cd160
4.54E−04
0.24
1.01E−02
−1.39
5.51E−17


Map3k8
1.00E+00
0.27
4.85E−06
0.10
9.09E−01


Tnfsf8
4.04E−01
−0.74
3.11E−27
0.87
1.14E−10


Ifitm1
1.00E+00
3.16
 1.00E−167
1.21
2.18E−07


Nfkbiz
1.00E+00
−0.17
1.07E−03
0.20
3.50E−01


Fosl2
1.00E+00
−0.70
4.61E−36
0.14
6.91E−01


Crem
1.00E+00
−0.94
1.07E−66
0.46
3.59E−05


Ccdc85b
1.00E+00
0.06
4.76E−01
−0.25
1.73E−01


Fos
8.71E−01
−1.04
1.20E−32
0.53
4.09E−02


Gpr183
1.00E+00
0.21
5.21E−06
−0.09
8.27E−01


S100a4
8.76E−01
1.53
 2.23E−210
0.10
6.18E−01


1110008f13rik
1.00E+00
0.32
2.97E−13
0.06
9.31E−01


Lsp1
1.00E+00
0.61
 9.93E−121
−0.20
7.10E−04


Litaf
9.15E−01
−0.23
6.76E−04
0.29
1.70E−01


Cd7
2.19E−05
0.76
1.54E−22
−1.10
2.81E−13


Dusp2
2.07E−01
0.22
2.20E−03
−0.21
5.56E−01


Plac8
8.71E−02
0.32
8.98E−09
−1.00
1.74E−25


H1f0
9.15E−01
0.39
4.24E−09
−0.57
2.68E−04


S1pr1
9.15E−01
0.88
1.61E−61
−0.15
6.60E−01


Ncf4
1.00E+00
0.62
2.05E−37
−0.29
6.51E−02


Smim3
1.00E+00
−0.11
1.78E−01
0.23
4.28E−01


Tesc
1.00E+00
−0.34
4.70E−12
0.04
1.00E+00


Rbms1
1.00E+00
0.29
7.80E−10
−0.15
5.25E−01


Lpxn
1.00E+00
−0.04
6.22E−01
−0.21
9.69E−02


Tnfrsf9
9.15E−01
−0.34
8.09E−06
0.13
9.01E−01


Pmm1
1.00E+00
0.14
5.91E−02
−0.09
9.31E−01


Tob2
1.00E+00
−0.75
9.68E−37
−0.03
1.00E+00


Ifng
9.15E−01
−0.11
4.38E−01
0.25
4.83E−01


Cd226
1.00E+00
0.22
3.24E−04
−0.35
7.33E−02


Ctsw
1.00E+00
0.41
2.35E−33
−0.40
1.07E−08


Itga4
9.15E−01
0.40
1.49E−15
−0.41
2.71E−03


Cd28
1.00E+00
0.08
6.50E−02
0.29
5.47E−05


Klf2
5.50E−01
1.25
4.15E−91
−0.23
2.36E−01


Ly6c2
8.72E−01
1.60
2.37E−58
0.29
6.52E−01


Ccr9
5.15E−07
−0.39
8.08E−05
−0.87
4.80E−06


Ets1
1.00E+00
−0.13
1.64E−05
−0.16
9.20E−02


Il7r
8.46E−01
0.14
5.94E−03
−0.35
7.68E−04


Ptpn22
6.92E−01
−0.12
2.54E−03
−0.03
1.00E+00


Gm12840
1.00E+00
0.09
3.27E−01
−0.59
7.30E−07


Zfp36l1
8.94E−01
−0.35
2.80E−10
−0.11
7.89E−01


Atxn2l
1.00E+00
0.01
8.67E−01
0.02
1.00E+00


Pde4b
1.00E+00
−0.05
4.58E−01
−0.04
1.00E+00


Selp
1.00E+00
0.01
5.37E−01
0.03
5.25E−01


Anxa6
1.00E+00
0.48
6.74E−49
0.01
1.00E+00


Peli1
1.00E+00
0.00
9.94E−01
0.18
2.36E−01


Odc1
1.00E+00
−1.00
 1.42E−103
0.78
1.42E−15


Pglyrp1
1.00E+00
1.21
 4.44E−123
−0.34
1.61E−02


Pim3
1.00E+00
−0.48
3.57E−14
0.29
2.16E−01


Pim1
7.90E−02
−0.11
1.68E−02
0.38
1.17E−07


Mt1
9.15E−01
0.69
2.54E−19
−0.66
4.42E−03


Stat3
1.00E+00
−0.26
1.03E−07
0.19
3.44E−01


Stat5a
1.00E+00
−0.11
1.64E−01
0.16
7.24E−01


Vmp1
6.99E−01
−0.01
9.62E−01
−0.27
6.92E−02


Ier2
1.00E+00
0.21
2.69E−07
−0.03
1.00E+00


Tnip1
1.00E+00
0.13
3.16E−02
0.14
6.52E−01


Timp1
1.00E+00
0.00
5.52E−01
0.00
1.00E+00


Amdhd1
1.00E+00
0.01
6.41E−01
−0.02
1.00E+00


Rora
1.00E+00
0.12
9.23E−03
0.16
2.68E−01


Gm5111
1.00E+00
0.01
5.23E−01
−0.04
5.70E−01


Fermt3
1.00E+00
0.19
2.35E−04
−0.31
2.58E−02


Dap
7.71E−01
0.15
1.25E−02
−0.34
3.38E−02


Hist1h1c
1.00E+00
0.52
2.52E−16
−0.37
9.01E−02


Cfl1
2.14E−01
0.15
5.96E−13
0.02
1.00E+00


Ipmk
1.00E+00
−0.36
1.89E−08
0.16
6.84E−01


Klrd1
2.07E−01
1.28
 3.41E−111
−0.26
1.92E−01


Gfi1
9.92E−01
−0.01
9.97E−01
−0.11
8.05E−01


S100a6
1.00E+00
1.20
 1.69E−261
0.06
8.25E−01


Rorc
1.00E+00
−0.11
3.02E−04
−0.02
9.31E−01


Stat4
1.00E+00
−0.28
2.49E−08
0.25
1.02E−01


Fdps
1.00E+00
−0.09
2.97E−01
0.06
1.00E+00


Gpr65
1.00E+00
−0.33
1.74E−07
0.02
1.00E+00


Rapgef6
1.00E+00
−0.02
8.37E−01
−0.07
9.35E−01


Tmem160
1.00E+00
0.27
2.30E−12
−0.02
1.00E+00


Rasgrp1
1.00E+00
−0.39
6.41E−14
−0.07
9.31E−01


Pnkd
9.15E−01
0.08
2.94E−01
−0.11
8.44E−01


Ccnd3
1.00E+00
0.41
1.47E−21
0.28
1.64E−02


Panx1
1.00E+00
0.20
5.88E−04
−0.06
1.00E+00


Thap11
9.15E−01
0.15
1.28E−02
−0.22
3.96E−01


Lysmd2
1.00E+00
−0.01
8.99E−01
−0.34
8.45E−02


Ubac2
1.00E+00
0.03
7.34E−01
−0.21
2.85E−01


Lgals3
9.15E−01
1.40
 2.98E−233
0.23
2.11E−02


Cyb5r4
1.00E+00
0.32
4.83E−11
−0.07
9.31E−01


Upf3a
1.00E+00
0.12
9.45E−02
−0.39
1.19E−02


Gm10076
1.00E+00
−0.09
8.50E−02
−1.04
8.24E−36


Ccdc69
1.00E+00
0.08
3.35E−01
−0.10
8.77E−01


Ccl5
3.77E−04
0.81
6.76E−48
−1.13
1.94E−20


Gramd3
9.26E−01
0.42
2.99E−26
−0.21
5.32E−02


Errfi1
1.00E+00
−0.25
4.81E−04
0.26
2.86E−01


Itgae
2.78E−03
0.27
2.71E−04
−0.82
6.06E−08


Il2ra
1.00E+00
0.03
7.88E−01
0.22
5.25E−01


Gpx4
1.00E+00
−0.35
2.78E−26
0.11
5.10E−01


Ndfip1
1.00E+00
−0.14
2.09E−03
0.14
4.52E−01


Syt11
1.00E+00
0.10
2.17E−01
−0.05
1.00E+00


Dph5
9.15E−01
−0.02
7.93E−01
0.11
8.35E−01


Slc39a8
9.15E−01
−0.07
2.01E−01
−0.08
7.03E−01


Rnf187
1.00E+00
−0.11
5.11E−02
0.02
1.00E+00


Fam53b
1.00E+00
0.19
2.10E−03
0.04
1.00E+00


Prdx5
9.15E−01
−0.07
2.29E−01
0.11
6.80E−01


Ccrl2
5.56E−01
−0.15
8.31E−02
0.24
4.99E−01


Ep300
1.00E+00
0.06
5.04E−01
−0.13
7.40E−01


Hdac7
1.00E+00
0.02
7.59E−01
−0.28
7.88E−02


Cd6
1.00E+00
−0.05
4.17E−01
−0.23
5.53E−02


Traf3ip2
7.75E−01
0.08
2.19E−01
−0.29
9.01E−02


Gnb2
1.00E+00
0.17
7.24E−07
−0.20
3.37E−02


Tet2
1.00E+00
−0.17
1.02E−02
0.11
8.71E−01


Fam189b
1.00E+00
−0.09
2.93E−01
−0.08
9.31E−01


Skap2
1.00E+00
0.04
6.97E−01
−0.06
1.00E+00


Lgals1
8.36E−01
1.11
0.00E+00
0.30
1.31E−09


Socs1
1.00E+00
−0.29
3.38E−06
0.34
6.39E−02


Itgav
9.15E−01
−0.36
1.44E−09
0.30
1.07E−01


Dnajb4
1.00E+00
−0.31
3.77E−06
0.34
6.08E−02


Cdkn1a
1.00E+00
−0.69
6.69E−31
0.80
2.00E−10


Arhgef2
1.00E+00
0.16
1.31E−02
−0.19
5.25E−01


Dnmt3a
1.00E+00
−0.06
4.56E−01
−0.08
9.31E−01


Jund
8.04E−06
−0.12
1.18E−03
0.68
6.22E−42


Scamp3
1.00E+00
0.09
1.62E−01
−0.09
8.64E−01


Tmem30a
6.80E−01
0.14
1.32E−02
−0.35
7.50E−03


Ash1l
1.00E+00
−0.03
7.62E−01
0.02
1.00E+00


Lsm14a
1.00E+00
0.10
1.22E−01
−0.15
6.13E−01


Slain2
1.00E+00
0.02
8.45E−01
−0.14
6.99E−01


Muc1
1.00E+00
0.11
9.34E−02
0.02
1.00E+00


Adamts14
1.00E+00
0.00
7.34E−01
0.00
1.00E+00


Ptk2b
1.00E+00
0.02
8.39E−01
−0.06
1.00E+00


Stk11
1.00E+00
−0.34
1.06E−11
0.11
8.41E−01


Ccr2
1.00E+00
0.17
2.17E−03
0.11
7.02E−01


Itgal
4.62E−01
0.06
5.02E−01
0.06
9.60E−01


Elf1
9.15E−01
0.01
9.24E−01
0.01
1.00E+00


Ptprc
1.00E+00
0.20
4.24E−12
−0.17
6.25E−02


Rbx1
1.00E+00
0.06
1.77E−01
−0.07
8.72E−01


Traf3ip3
9.74E−01
0.27
6.92E−07
−0.44
1.42E−03


Ccdc88b
1.00E+00
0.10
2.07E−01
0.12
8.72E−01


Tsen34
1.00E+00
−0.01
8.73E−01
−0.08
8.78E−01


Ay036118
1.00E+00
−0.29
8.27E−06
−1.15
3.92E−23


Il24


H2-q10
1.00E+00
−0.07
5.33E−01
0.34
3.05E−02


Scand1
1.00E+00
0.16
8.97E−05
−0.17
2.65E−01


Tab2
1.00E+00
0.14
3.65E−02
0.09
9.31E−01


Nfkb1
1.00E+00
−0.15
5.50E−03
0.14
5.92E−01


Rusc1
1.00E+00
0.13
5.06E−02
−0.09
9.12E−01


Esyt1
1.00E+00
0.48
8.09E−24
−0.13
6.89E−01


Commd7
9.96E−01
0.04
6.83E−01
−0.10
9.01E−01


Rfng
1.00E+00
0.01
9.19E−01
−0.19
4.61E−01


Rpl27-ps3
2.26E−01
−0.28
1.77E−10
−1.05
8.09E−50


Gigyf1
1.00E+00
−0.10
1.28E−01
−0.11
7.49E−01


Rgcc
6.43E−01
0.04
7.34E−01
1.71
1.89E−45


Rpl3
9.15E−01
−0.02
4.86E−01
−0.15
2.99E06 


Mrpl20
1.00E+00
0.16
1.55E−03
−0.03
1.00E+00


Gm2a
1.00E+00
−0.21
3.51E−05
0.15
5.25E−01


Mus81
1.00E+00
0.13
1.54E−02
−0.03
1.00E+00


Lpp
1.00E+00
0.06
3.71E−01
−0.18
5.12E−01


Chp1
9.15E−01
0.16
4.42E−03
0.00
1.00E+00


Mob4
1.00E+00
0.11
5.09E−02
0.10
8.35E−01


Lamp1
1.00E+00
−0.06
4.76E−01
−0.03
1.00E+00


Phf5a
1.00E+00
0.16
2.65E−03
−0.24
1.51E−01


Fnip1
1.00E+00
0.11
8.89E−02
−0.01
1.00E+00


Calm3
1.00E+00
−0.05
4.72E−01
0.08
8.45E−01


Lrp10
1.00E+00
0.13
2.73E−02
−0.14
5.81E−01


Stat5b
1.00E+00
−0.12
1.09E−01
0.02
1.00E+00


Bach2
1.00E+00
−0.04
4.97E−01
−0.04
1.00E+00


Prkab1
1.00E+00
−0.02
8.52E−01
0.27
1.41E−01


Hvcn1
9.15E−01
−0.18
5.47E−03
0.21
4.56E−01


Tmem150a
1.00E+00
0.01
5.10E−01
−0.01
1.00E+00


Nfkbia
1.00E+00
0.22
5.16E−08
0.27
1.43E−03


Ifitm3
1.00E+00
1.07
9.58E−66
0.02
1.00E+00


Egfp_ires_il23r


Bad
1.00E+00
0.15
1.86E−02
−0.05
1.00E+00


Zbtb46
1.00E+00
0.10
2.77E−02
−0.08
8.94E−01


Cacna1s
1.00E+00
−0.05
2.78E−01
−0.01
1.00E+00


Vamp3
1.00E+00
0.15
1.23E−02
0.05
1.00E+00


Fyn
1.00E+00
−0.06
4.94E−01
−0.06
9.32E−01


Stx6
1.00E+00
−0.25
1.19E−05
−0.05
1.00E+00


Ikzf3
1.00E+00
−0.24
5.66E−04
0.17
6.73E−01


Mgat2
1.00E+00
0.17
1.12E−03
0.16
5.10E−01


Serpinb9
9.50E−01
0.26
8.45E−06
−0.35
9.55E−03


Dennd1b
9.15E−01
−0.02
8.68E−01
−0.16
5.86E−01


Bloc1s4
1.00E+00
0.00
9.85E−01
0.18
5.25E−01


Anxa1
1.00E+00
1.20
1.76E−91
0.79
2.26E−09


Smad3
1.00E+00
0.15
1.68E−02
0.01
1.00E+00


Tmem258
1.00E+00
−0.02
7.37E−01
0.06
9.31E−01


Lmna
8.60E−04
0.20
1.46E−02
1.94
1.16E−69


Sp140
1.00E+00
0.15
2.19E−02
−0.23
3.43E−01


Actn2
1.00E+00
0.15
3.07E−02
−0.56
2.95E−05


Acbd6
1.00E+00
0.01
8.54E−01
−0.20
4.30E−01


Ahnak
1.00E+00
0.50
1.39E−39
0.16
3.54E−01


Arpc2
1.00E+00
0.16
4.07E−15
−0.02
9.72E−01


Erp29
1.00E+00
0.19
6.28E−04
−0.03
1.00E+00


Nhp2l1
1.00E+00
−0.23
1.13E−09
0.19
1.40E−01


Ctbp1
1.00E+00
0.03
6.83E−01
−0.35
1.72E−03


Gba
1.00E+00
0.11
9.45E−02
−0.20
4.53E−01


Lztfl1
9.59E−01
−0.32
1.88E−07
−0.56
2.81E−04


Ptpn2
1.00E+00
0.04
6.83E−01
−0.13
7.03E−01


Usp36
1.00E+00
−0.15
4.22E−02
−0.16
6.31E−01


Grb7
9.96E−01
−0.19
4.07E−04
0.15
5.18E−01


Fndc3a
9.96E−01
−0.03
7.34E−01
0.08
9.31E−01


Mt2
9.78E−01
0.41
1.92E−10
−0.40
3.25E−01


Dctn4
9.15E−01
0.03
7.34E−01
0.05
1.00E+00


Nusap1
1.00E+00
−0.43
6.53E−13
0.12
4.14E−01


Rbm22
1.00E+00
0.16
1.75E−03
−0.19
3.93E−01


Crip1
1.00E+00
1.16
 3.21E−287
0.54
9.93E−22


Anp32b
1.00E+00
−0.20
1.65E−05
0.14
5.25E−01


Aurkaip1
1.00E+00
0.04
6.22E−01
0.04
1.00E+00


Ripk2
1.00E+00
0.21
1.59E−04
−0.15
6.84E−01


Nubp1
1.00E+00
0.12
6.45E−02
−0.28
1.17E−01


Camta1
1.00E+00
−0.05
5.65E−01
−0.08
9.33E−01


Ube2j2
1.00E+00
0.05
4.56E−01
−0.04
1.00E+00


Kif3b
9.15E−01
0.00
9.36E−01
−0.09
7.23E−01


Brap
1.00E+00
−0.08
3.33E−01
−0.04
1.00E+00


Gm8096


Ermn
1.00E+00
−0.10
4.16E−01
−0.13
9.31E−01


Plagl2
1.00E+00
−0.05
5.51E−01
−0.10
8.23E−01


Plek
1.00E+00
0.44
1.16E−12
0.01
1.00E+00


D030056l22rik
1.00E+00
−0.29
3.39E−06
0.22
3.86E−01


Ccr1
7.11E−01
−0.20
1.53E−03
0.17
4.25E−01


Krtcap2
5.81E−03
0.14
3.21E−06
0.31
3.46E−07


Sh2b1
1.00E+00
0.01
8.91E−01
−0.13
8.16E−01


Abi3
9.96E−01
−0.51
3.25E−16
−0.12
8.68E−01


Ccnl2
1.00E+00
0.06
4.38E−01
−0.02
1.00E+00


Kbtbd7
1.00E+00
0.03
4.57E−01
0.06
8.26E−01


Csf2
1.00E+00
0.07
7.09E−01
0.43
1.96E−02


Pycard
9.15E−01
0.82
8.39E−90
−0.55
3.15E−10


Dock7
1.00E+00
0.00
6.83E−01
0.00
1.00E+00


Herpud1
2.44E−01
0.06
4.49E−01
0.22
1.99E−01


Arf6
1.00E+00
0.12
1.50E−03
0.22
1.95E−02


Zyx
1.00E+00
0.87
1.51E−71
−0.22
2.86E−01


Zfp91
1.00E+00
−0.04
6.57E−01
0.09
9.35E−01


Fam171b
1.00E+00
0.02
5.51E−01
0.02
1.00E+00


Maml2
1.00E+00
0.12
7.23E−02
0.02
1.00E+00


Ifngr2
1.00E+00
−0.22
6.48E−06
0.04
1.00E+00


Bhlhe40
9.15E−01
0.12
1.44E−04
0.18
7.29E−03


Cisd1
1.00E+00
−0.01
8.15E−01
0.07
9.58E−01


Zfp420
7.11E−01
−0.01
7.62E−01
0.02
1.00E+00


Zc3h12a
1.00E+00
0.11
6.00E−02
0.46
2.45E−06


Plcg2
9.15E−01
0.08
1.03E−02
−0.07
8.19E−01


2310036o22rik
1.00E+00
0.03
6.28E−01
−0.11
6.52E−01


Eif3c
1.00E+00
0.11
4.69E−02
−0.06
9.31E−01


Slc15a3
1.00E+00
−0.18
1.93E−02
−0.01
1.00E+00


Acap3
1.00E+00
0.10
4.53E−02
0.13
6.52E−01


Tef
1.00E+00
0.02
7.34E−01
0.18
4.17E−01


Emp3
1.00E+00
0.93
 4.59E−187
0.05
9.01E−01


Ssr2
1.00E+00
0.06
5.51E−01
−0.06
9.83E−01


Usp1
1.00E+00
−0.10
1.51E−01
0.18
5.37E−01


Rpl10-ps3
1.00E+00
−0.25
1.60E−07
−0.89
5.90E−25


Plcxd2
1.00E+00
−0.30
1.20E−06
−0.42
9.75E−03


Adcy7
1.00E+00
0.03
7.34E−01
−0.06
9.85E−01


Irf1
1.00E+00
0.07
4.01E−01
0.43
1.05E−03


Aamp
1.00E+00
−0.10
7.72E−02
0.06
9.31E−01


Gm8730
5.54E−06
0.05
1.49E−01
−0.78
1.16E−56


Zgpat
1.00E+00
0.03
6.95E−01
−0.18
5.25E−01


St13
9.15E−01
−0.30
3.36E−10
0.29
4.51E−02


Cdc42se2
9.52E−01
−0.01
8.95E−01
−0.06
9.35E−01


Anxa2
9.15E−01
0.69
3.68E−70
0.35
1.11E−04


Cpsf3l
1.00E+00
0.09
2.85E−01
−0.04
1.00E+00


Gm2000
8.76E−01
−0.23
7.20E−07
−0.84
1.60E−23


Trim46
1.00E+00
0.08
4.53E−02
−0.06
9.31E−01


Dusp16
1.00E+00
0.02
6.23E−01
−0.03
1.00E+00


Zmat5
1.00E+00
0.05
5.51E−01
−0.04
1.00E+00


Ptprk
1.00E+00
0.06
5.33E−01
−0.18
5.86E−01


Zdhhc7
8.47E−01
0.15
1.69E−02
0.13
7.72E−01


Il2
8.72E−01
−0.23
8.82E−04
0.01
1.00E+00


Msto1
1.00E+00
0.02
7.46E−01
−0.14
5.96E−01


Il10
1.00E+00
−0.26
2.62E−05
−0.02
1.00E+00


Sbno2
1.00E+00
0.03
6.75E−01
−0.11
6.35E−01


Snx17
1.00E+00
−0.02
8.03E−01
−0.26
1.84E−01


Kif11
1.00E+00
−0.13
8.65E−06
−0.10
3.77E−01


Ndfip2
1.00E+00
0.07
3.33E−01
−0.07
9.31E−01


Card9
9.96E−01
−0.01
7.34E−01
0.02
5.25E−01


Lsm4
9.15E−01
0.02
7.43E−01
−0.12
5.91E−01


Ormdl3
9.96E−01
−0.22
4.71E−04
−0.04
1.00E+00


S100a10
5.39E−01
0.71
 2.92E−237
0.06
6.52E−01


Notch2
1.00E+00
−0.14
3.79E−02
0.02
1.00E+00


Senp7
1.00E+00
0.00
9.90E−01
−0.12
8.32E−01


Cd48
1.00E+00
0.80
 2.02E−100
−0.29
2.03E−03


Ssbp4
1.00E+00
0.13
1.85E−02
0.14
5.70E−01


Cul1
1.00E+00
−0.05
5.74E−01
−0.09
9.31E−01


Mettl10
1.00E+00
0.11
1.33E−01
0.05
1.00E+00


Rabep2
1.00E+00
0.10
1.23E−01
−0.08
9.31E−01


Pkig
4.59E−01
−0.09
4.74E−02
0.10
7.03E−01


Desi1
1.00E+00
−0.04
6.83E−01
−0.15
6.87E−01


Furin
5.16E−01
−0.61
7.81E−32
0.43
2.07E−04


Tcof1
1.00E+00
−0.05
6.22E−01
−0.01
1.00E+00


Glipr2
1.00E+00
0.84
2.28E−92
−0.01
1.00E+00


Tgfbr3
1.00E+00
−0.05
4.97E−01
−0.05
9.06E−01


Tyk2
4.66E−01
0.07
3.28E−01
−0.03
1.00E+00


Kif21b
1.00E+00
0.00
9.79E−01
−0.07
9.62E−01


Tufm
1.00E+00
0.02
7.86E−01
0.01
1.00E+00


Zmiz1
1.00E+00
0.05
5.75E−01
−0.24
3.12E−01


Il21
1.00E+00
−0.13
8.93E−04
0.04
8.72E−01


Ttpal
1.00E+00
0.05
5.37E−01
−0.04
1.00E+00


Rps6kb1
7.31E−01
−0.10
1.94E−01
0.03
1.00E+00


Camk2g
1.00E+00
0.07
4.32E−01
−0.14
7.13E−01


Tom1
1.00E+00
0.07
3.82E−01
−0.05
9.90E−01


Actr1a
1.00E+00
−0.03
7.34E−01
−0.16
6.52E−01


Rgs14
1.00E+00
0.03
7.34E−01
−0.04
1.00E+00


Ublcp1
1.00E+00
0.05
5.51E−01
−0.19
4.10E−01


Otud3
1.00E+00
0.03
6.85E−01
−0.11
7.40E−01


Tmem180
9.15E−01
−0.01
9.00E−01
−0.02
1.00E+00


Ergic1
1.00E+00
−0.17
1.27E−03
0.16
4.65E−01


Aa467197
1.00E+00
0.97
4.55E−86
0.14
6.47E−01


Tdp2
1.00E+00
0.03
7.93E−01
0.27
2.02E−01


Rac1
1.00E+00
0.07
7.04E−02
−0.05
9.27E−01


Phlda3
1.00E+00
0.01
9.18E−01
0.17
3.67E−01


Trmt112
1.00E+00
0.00
9.68E−01
0.02
1.00E+00


Ccny
1.00E+00
−0.07
4.44E−01
−0.11
8.67E−01


Slc43a3
9.15E−01
−0.03
6.07E−01
−0.14
4.53E−01


Ezh2
1.00E+00
−0.27
4.40E−06
−0.08
9.31E−01


Rps14
1.00E+00
−0.06
7.47E−06
0.00
1.00E+00


Spred2
1.00E+00
−0.05
4.68E−01
−0.01
1.00E+00


Rn7s2


Rn7s1


Rpap2
1.00E+00
−0.02
7.66E−01
−0.14
5.25E−01


Cit
1.00E+00
−0.08
4.93E−03
0.21
3.02E−01


Ascc2
1.00E+00
0.04
6.64E−01
−0.06
9.35E−01


Ksr1
1.00E+00
0.06
2.37E−01
−0.09
8.29E−01


Edem2
1.00E+00
0.02
7.93E−01
−0.06
1.00E+00


Blzf1
1.00E+00
0.02
8.41E−01
−0.04
1.00E+00


Ppp5c
1.00E+00
0.00
9.71E−01
0.08
9.31E−01


Smurf1
9.15E−01
0.02
7.34E−01
−0.18
2.27E−01


Nop9
1.00E+00
−0.01
9.08E−01
−0.23
3.48E−01


Slc30a7
1.00E+00
0.09
1.87E−01
−0.02
1.00E+00


Tnfrsf8
1.00E+00
−0.01
6.87E−01
−0.02
9.96E−01


Adcy3
1.00E+00
−0.01
8.94E−01
−0.08
8.75E−01


Pdcd1
1.00E+00
−0.01
9.71E−01
0.37
1.36E−01


Fen1
1.00E+00
−0.21
2.53E−04
0.04
1.00E+00


Themis
9.15E−01
−0.02
8.61E−01
0.07
9.31E−01


Nudt22
1.00E+00
0.01
9.16E−01
0.07
9.33E−01


Cyth1
1.00E+00
−0.02
8.30E−01
0.07
9.53E−01


Tmbim1
9.15E−01
−0.01
9.43E−01
−0.02
1.00E+00


Ndufaf1
1.00E+00
0.04
6.31E−01
−0.09
8.87E−01


Klrc1
8.76E−01
0.87
4.48E−57
0.28
3.82E−02


Pomc
9.15E−01
0.03
6.62E−01
−0.18
1.32E−01


Cpeb4
8.76E−01
−0.04
5.59E−01
0.04
9.44E−01


Cul2
1.00E+00
−0.11
9.35E−02
0.02
1.00E+00


Hgfac
1.00E+00
0.03
2.80E−02
0.00
1.00E+00


Pofut1
1.00E+00
−0.10
6.46E−02
0.02
1.00E+00


Clasp2
1.00E+00
−0.04
4.34E−01
−0.01
1.00E+00


Nme7
3.48E−01
0.04
5.71E−01
−0.04
9.97E−01


Ndst1
1.00E+00
−0.03
4.51E−01
0.01
1.00E+00


Gpr137
1.00E+00
0.02
6.96E−01
−0.03
1.00E+00


Ncoa5
1.00E+00
−0.05
4.56E−01
−0.16
3.19E−01


Mapkapk5
1.00E+00
0.02
6.95E−01
0.01
1.00E+00


Auh
1.00E+00
−0.04
6.83E−01
−0.21
4.42E−01


Gpx3
1.00E+00
−0.01
7.93E−01
0.04
9.02E−01


Tmem116
1.00E+00
0.03
4.43E−02
0.01
1.00E+00


Hint1
1.00E+00
−0.05
2.86E−01
0.03
9.94E−01


Mtmr3
1.00E+00
−0.04
6.89E−01
0.04
1.00E+00


Ube2l3
1.00E+00
0.04
5.15E−01
0.01
1.00E+00


Il23r
1.00E+00
−0.06
3.06E−02
0.01
1.00E+00


Asb2
1.01E−01
−0.82
1.21E−45
0.23
4.53E−01


Snx32
1.00E+00
0.03
4.97E−01
0.02
1.00E+00


Fgfr1op
1.00E+00
−0.07
2.95E−01
−0.05
1.00E+00


Ccl2
1.00E+00
−0.02
6.93E−01
0.01
1.00E+00


Slc16a10
1.00E+00
−0.04
1.79E−01
−0.06
5.37E−01


Batf
1.00E+00
0.19
1.01E−04
−0.08
9.31E−01


Trpt1
9.96E−01
−0.01
9.76E−01
0.02
1.00E+00


Jazf1
1.00E+00
−0.02
7.34E−01
−0.05
8.91E−01


Tubd1
1.00E+00
−0.03
3.98E−01
−0.02
1.00E+00


Rtel1
1.00E+00
0.05
3.81E−01
−0.08
8.67E−01


Srm
9.15E−01
−0.06
3.16E−01
0.06
9.41E−01


Thada
8.76E−01
−0.23
1.60E−07
−0.03
9.94E−01


Tppp
9.15E−01
0.00
9.14E−01
0.10
5.10E−01


Ppp4c
1.00E+00
0.16
7.01E−05
−0.14
4.53E−01


Per3
1.00E+00
−0.09
1.74E−03
−0.01
1.00E+00


Hormad2
1.00E+00
−0.03
9.85E−02
−0.02
5.72E−01


Gm20186
1.00E+00
−0.20
8.04E−03
−0.45
5.31E−03


Ccdc122
1.00E+00
0.01
4.72E−01
−0.03
8.72E−01


Fasl
1.00E+00
0.19
2.41E−04
0.35
1.76E−03


Sh2d2a
5.39E−01
−0.13
6.69E−03
−0.24
5.78E−02


Atp6v0a1
1.00E+00
−0.01
7.06E−01
0.02
9.94E−01


Fosl1
1.00E+00
−0.01
5.87E−01
−0.01
9.31E−01


Itgb8
1.00E+00
−0.01
6.74E−01
−0.01
9.31E−01


Amz1
9.15E−01
0.00
8.96E−01
0.03
8.33E−01


Cxcl5
1.00E+00
0.00
6.83E−01
−0.01
9.31E−01


Nkx2-3
1.00E+00
0.00
9.18E−01
0.05
2.36E−01


Thbs3
1.00E+00
−0.01
1.82E−01
0.00
1.00E+00


Pf4
1.00E+00
−0.02
7.34E−01
−0.01
1.00E+00


Ephx4
1.00E+00
0.00
9.01E−01
0.00
1.00E+00


Osmr
1.00E+00
0.00
4.97E−01
0.00
1.00E+00


Ccl11
1.00E+00
−0.01
2.61E−01
0.00
1.00E+00


Fndc4
1.00E+00
−0.01
2.98E−01
0.00
1.00E+00


Ccl7
1.00E+00
−0.01
2.61E−01
0.00
1.00E+00


Ptrf
1.00E+00
0.01
6.89E−01
0.02
7.31E−01


Mei1
1.00E+00
0.00
4.97E−01
0.00
1.00E+00


Lamb1
1.00E+00
0.00
4.20E−01
0.00
1.00E+00
















Gene
logFC_LPL_TissueDE
FDRLPL_TissueDE
LPL_Geno_logFc
LPLGeno_FDR







Gpr18
0.96
 1.73E−191
−0.43
2.85E−23



Gzmb
1.73
0.00E+00
−0.07
3.72E−01



Itgb1
−2.90
0.00E+00
−0.02
8.68E−01



Ccr3
−0.01
1.50E−01
0.01
3.64E−01



Gzma
0.25
3.52E−05
−1.55
 6.24E−128



Il22
2.34
 1.69E−284
0.09
5.63E−01



Zfp36l2
1.28
0.00E+00
−0.77
 1.26E−128



Zbtb38
−0.02
7.35E−01
−0.21
4.35E−07



Cd74
0.47
2.30E−23
0.35
1.00E−07



Ccr5
1.14
 4.43E−273
−0.19
4.51E−06



Cd160
0.54
3.27E−37
−1.38
 3.92E−160



Map3k8
1.57
0.00E+00
−0.05
2.66E−01



Tnfsf8
2.00
0.00E+00
0.25
1.80E−07



Ifitm1
−1.25
2.03E−53
0.27
7.06E−02



Nfkbiz
2.36
0.00E+00
0.24
1.85E−13



Fosl2
2.34
0.00E+00
0.42
1.93E−30



Crem
3.18
0.00E+00
0.87
 1.52E−146



Ccdc85b
−0.08
3.66E−03
−0.31
1.45E−22



Fos
1.94
0.00E+00
0.90
3.74E−58



Gpr183
1.35
0.00E+00
0.03
5.64E−01



S100a4
−1.82
0.00E+00
−0.71
9.86E−65



1110008f13rik
−0.29
3.34E−38
−0.02
7.17E−01



Lsp1
−0.86
0.00E+00
−0.41
5.73E−94



Litaf
1.61
0.00E+00
0.31
5.15E−14



Cd7
−0.36
9.57E−25
−1.40
 5.09E−150



Dusp2
−0.23
8.06E−13
−0.42
2.72E−20



Plac8
1.58
0.00E+00
−0.29
8.95E−15



H1f0
0.30
2.02E−17
−0.75
1.19E−64



S1pr1
−0.73
 1.05E−149
−0.42
4.66E−22



Ncf4
−0.29
2.67E−26
−0.29
6.15E−15



Smim3
1.46
0.00E+00
0.20
2.60E−06



Tesc
0.47
2.25E−70
0.09
1.66E−02



Rbms1
−0.42
3.83E−72
−0.18
1.11E−07



Lpxn
0.97
0.00E+00
−0.04
2.29E−01



Tnfrsf9
1.37
 6.99E−304
0.50
1.36E−26



Pmm1
−0.02
5.25E−01
−0.15
2.31E−04



Tob2
1.32
0.00E+00
0.38
7.86E−22



Ifng
1.69
0.00E+00
0.45
4.62E−16



Cd226
−0.30
8.07E−26
−0.23
6.66E−08



Ctsw
0.32
2.47E−57
−0.35
3.78E−45



Itga4
−0.39
1.20E−42
−0.44
9.68E−35



Cd28
1.08
0.00E+00
0.11
1.52E−06



Klf2
−1.77
0.00E+00
−0.71
1.06E−46



Ly6c2
−2.35
0.00E+00
−0.04
8.54E−01



Ccr9
0.97
 9.81E−132
−0.93
5.85E−62



Ets1
0.87
0.00E+00
0.03
1.65E−01



Il7r
−0.06
6.14E−02
−0.48
7.56E−56



Ptpn22
1.18
0.00E+00
−0.14
5.52E−08



Gm12840
2.19
0.00E+00
−0.09
5.83E−02



Zfp36l1
1.17
0.00E+00
−0.19
8.62E−07



Atxn2l
0.07
2.08E−02
0.01
8.40E−01



Pde4b
2.14
0.00E+00
−0.02
6.98E−01



Selp
0.00
2.17E−01
0.00
9.89E−01



Anxa6
−0.83
0.00E+00
−0.20
3.31E−15



Peli1
0.92
0.00E+00
0.12
2.03E−05



Odc1
3.27
0.00E+00
0.72
 2.42E−135



Pglyrp1
−1.58
0.00E+00
−0.70
2.94E−61



Pim3
1.12
 2.33E−266
0.33
3.82E−14



Pim1
2.65
0.00E+00
0.14
3.43E−07



Mt1
0.65
1.10E−60
−0.23
8.28E−05



Stat3
1.08
0.00E+00
0.50
5.92E−61



Stat5a
0.47
7.41E−57
0.24
1.92E−09



Vmp1
0.51
1.96E−93
−0.22
2.35E−11



Ier2
0.43
6.68E−88
−0.02
5.61E−01



Tnip1
0.77
 2.23E−173
0.22
1.10E−10



Timp1
0.00
5.92E−02
0.00
4.94E−01



Amdhd1
0.00
7.11E−01
0.00
8.98E−01



Rora
1.63
0.00E+00
0.12
3.53E−05



Gm5111
0.01
7.54E−02
−0.02
6.99E−03



Fermt3
−0.46
4.11E−84
−0.36
5.96E−27



Dap
−0.33
2.26E−36
−0.28
2.10E−15



Hist1h1c
1.90
0.00E+00
−0.48
4.45E−25



Cfl1
−0.48
0.00E+00
−0.14
3.20E−22



Ipmk
0.92
 4.46E−219
0.27
5.98E−10



Klrd1
−1.07
 1.81E−199
−0.34
2.65E−12



Gfi1
−0.01
7.95E−01
−0.09
7.38E−02



S100a6
−1.05
0.00E+00
−0.50
2.02E−69



Rorc
0.02
2.72E−01
−0.07
3.21E−03



Stat4
0.87
 7.48E−245
0.35
3.64E−28



Fdps
−0.05
1.34E−01
−0.15
1.10E−03



Gpr65
0.86
 4.47E−166
0.17
1.39E−04



Rapgef6
0.41
8.06E−51
−0.10
1.05E−02



Tmem160
−0.11
6.65E−08
−0.20
8.36E−13



Rasgrp1
0.84
 1.94E−202
0.12
2.14E−03



Pnkd
−0.24
4.02E−19
−0.21
3.09E−08



Ccnd3
−1.12
0.00E+00
0.02
7.93E−01



Panx1
−0.17
1.23E−09
0.01
8.01E−01



Thap11
−0.29
2.70E−26
−0.13
6.17E−04



Lysmd2
0.09
1.88E−03
−0.25
2.67E−09



Ubac2
0.29
3.46E−29
−0.17
2.34E−06



Lgals3
−0.30
1.46E−24
0.05
3.04E−01



Cyb5r4
−0.50
2.63E−95
−0.29
9.44E−17



Upf3a
0.02
5.65E−01
−0.34
8.61E−21



Gm10076
0.20
5.88E−17
−0.69
 1.02E−153



Ccdc69
−0.49
4.22E−76
−0.18
1.53E−07



Ccl5
0.23
5.28E−10
−0.50
1.70E−33



Gramd3
1.92
0.00E+00
−0.22
1.66E−13



Errfi1
0.75
 2.26E−126
0.43
1.84E−24



Itgae
0.83
 3.08E−116
−1.03
 1.01E−109



Il2ra
0.74
 2.94E−134
0.22
9.64E−07



Gpx4
0.72
0.00E+00
0.22
6.61E−24



Ndfip1
0.72
 8.87E−237
0.19
8.28E−12



Syt11
−0.61
4.65E−99
−0.11
1.72E−02



Dph5
−0.39
2.02E−42
0.06
2.10E−01



Slc39a8
0.08
6.23E−05
0.01
8.96E−01



Rnf187
−0.15
1.19E−11
−0.05
2.23E−01



Fam53b
−0.83
 4.51E−193
−0.14
1.68E−03



Prdx5
0.37
1.56E−69
0.12
4.74E−05



Ccrl2
0.67
 3.95E−127
0.14
2.06E−02



Ep300
−0.06
4.74E−02
0.00
9.89E−01



Hdac7
−0.21
2.97E−15
−0.10
1.22E−02



Cd6
0.21
1.47E−23
−0.04
3.00E−01



Traf3ip2
−0.30
2.68E−31
−0.09
2.46E−02



Gnb2
−0.28
9.03E−64
−0.25
5.08E−28



Tet2
0.66
 2.79E−130
0.14
6.32E−04



Fam189b
−0.31
1.60E−32
−0.07
1.12E−01



Skap2
−0.02
4.09E−01
−0.13
1.54E−03



Lgals1
−1.15
0.00E+00
−0.17
1.87E−14



Socs1
0.64
5.14E−93
0.46
3.55E−32



Itgav
0.64
 5.62E−112
0.24
8.61E−09



Dnajb4
0.63
7.45E−98
0.38
1.46E−19



Cdkn1a
2.23
0.00E+00
0.77
1.83E−88



Arhgef2
−0.77
 1.60E−174
−0.23
6.78E−10



Dnmt3a
−0.20
1.16E−14
−0.11
3.41E−03



Jund
2.11
0.00E+00
0.61
 1.37E−184



Scamp3
−0.26
1.01E−30
−0.23
3.47E−13



Tmem30a
−0.08
2.09E−03
−0.35
1.16E−26



Ash1l
−0.29
2.45E−23
−0.05
2.62E−01



Lsm14a
−0.33
4.06E−43
−0.26
1.10E−14



Slain2
−0.04
1.61E−01
−0.06
2.29E−01



Muc1
0.38
1.56E−88
0.16
8.62E−06



Adamts14
0.00
4.18E−01
0.00
3.99E−01



Ptk2b
0.09
1.97E−03
0.01
9.09E−01



Stk11
0.59
 2.94E−110
0.28
3.12E−17



Ccr2
0.23
3.04E−18
0.03
4.65E−01



Itgal
−0.19
2.04E−14
−0.11
6.79E−03



Elf1
0.57
 2.94E−128
−0.05
1.85E−01



Ptprc
0.02
2.51E−01
−0.16
3.89E−15



Rbx1
−0.46
 3.93E−187
−0.14
4.63E−09



Traf3ip3
−0.85
 2.40E−253
−0.45
4.63E−34



Ccdc88b
0.06
3.10E−02
−0.08
9.71E−02



Tsen34
−0.38
5.90E−55
−0.05
1.20E−01



Ay036118
0.21
4.92E−12
−0.25
9.09E−11



Il24



H2-q10
0.06
5.93E−02
0.34
4.29E−19



Scand1
0.38
4.88E−74
−0.12
3.10E−05



Tab2
0.26
1.01E−20
−0.01
8.65E−01



Nfkb1
0.53
7.48E−97
0.20
7.58E−10



Rusc1
0.11
1.24E−04
−0.05
3.89E−01



Esyt1
−0.90
 6.87E−301
−0.24
3.30E−11



Commd7
−0.23
7.48E−19
−0.08
4.85E−02



Rfng
−0.05
9.05E−02
−0.14
2.09E−05



Rpl27-ps3
−0.04
8.61E−02
−0.40
1.29E−45



Gigyf1
−0.02
7.64E−01
−0.03
5.00E−01



Rgcc
1.58
0.00E+00
1.13
 9.68E−131



Rpl3
0.05
1.55E−11
−0.19
6.04E−99



Mrpl20
−0.25
3.76E−28
−0.16
1.68E−06



Gm2a
0.18
5.94E−14
0.01
7.98E−01



Mus81
−0.25
1.10E−24
−0.13
2.72E−05



Lpp
−0.08
8.01E−03
−0.05
3.01E−01



Chp1
0.14
4.48E−07
−0.03
5.50E−01



Mob4
0.24
4.38E−22
0.00
9.70E−01



Lamp1
−0.09
1.99E−03
−0.08
6.29E−02



Phf5a
−0.12
1.13E−06
−0.14
4.68E−05



Fnip1
0.25
4.48E−27
0.08
5.52E−02



Calm3
−0.41
 2.42E−100
−0.07
2.01E−02



Lrp10
−0.42
1.30E−69
−0.20
1.15E−08



Stat5b
0.45
8.98E−58
0.03
5.23E−01



Bach2
0.00
8.46E−01
−0.02
4.95E−01



Prkab1
−0.35
6.30E−38
0.08
4.65E−02



Hvcn1
0.04
1.62E−01
−0.01
8.83E−01



Tmem150a
0.00
4.94E−01
0.00
9.89E−01



Nfkbia
2.07
0.00E+00
0.12
8.93E−05



Ifitm3
−0.83
 1.03E−104
−0.28
5.76E−08



Egfp_ires_il23r



Bad
−0.41
1.49E−50
−0.13
1.83E−03



Zbtb46
0.21
2.32E−49
−0.02
7.54E−01



Cacna1s
0.10
1.50E−12
0.07
5.13E−02



Vamp3
0.11
1.11E−04
0.00
9.72E−01



Fyn
−0.07
4.20E−03
−0.03
4.63E−01



Stx6
0.29
1.07E−25
0.10
1.24E−02



Ikzf3
0.41
2.25E−36
0.33
4.87E−15



Mgat2
−0.26
4.37E−28
0.05
3.30E−01



Serpinb9
1.70
0.00E+00
0.21
1.47E−07



Dennd1b
−0.03
3.51E−01
−0.04
3.92E−01



Bloc1s4
0.27
2.06E−22
0.04
3.99E−01



Anxa1
−1.54
0.00E+00
0.09
2.17E−01



Smad3
0.10
2.25E−04
−0.01
8.89E−01



Tmem258
−0.20
4.26E−30
−0.08
3.54E−03



Lmna
1.99
0.00E+00
1.14
 3.52E−154



Sp140
−0.08
9.86E−03
−0.09
6.70E−02



Actn2
1.25
0.00E+00
−0.55
1.65E−44



Acbd6
0.22
5.41E−17
−0.04
4.00E−01



Ahnak
0.16
3.21E−12
0.09
5.88E−03



Arpc2
−0.07
4.13E−12
−0.06
2.31E−05



Erp29
−0.16
2.63E−10
−0.03
5.61E−01



Nhp2l1
0.37
1.56E−79
0.24
1.76E−23



Ctbp1
−0.21
4.08E−23
−0.32
5.84E−28



Gba
−0.08
5.03E−03
−0.13
8.46E−04



Lztfl1
1.24
0.00E+00
−0.30
3.32E−13



Ptpn2
0.35
1.25E−39
0.04
4.25E−01



Usp36
0.35
5.76E−37
0.05
3.77E−01



Grb7
0.34
2.65E−72
0.17
1.68E−05



Fndc3a
0.34
2.71E−37
0.09
4.78E−02



Mt2
0.21
1.44E−13
−0.16
3.94E−05



Dctn4
0.33
2.12E−33
−0.10
2.80E−02



Nusap1
−0.73
1.52E−56
−0.33
1.32E−09



Rbm22
0.03
3.51E−01
−0.07
1.15E−01



Crip1
−0.76
0.00E+00
0.11
1.42E−04



Anp32b
−0.48
 1.60E−118
−0.19
2.26E−10



Aurkaip1
−0.26
5.78E−38
−0.05
1.47E−01



Ripk2
0.36
9.55E−40
0.05
3.16E−01



Nubp1
−0.12
1.43E−05
−0.37
1.05E−25



Camta1
0.31
1.48E−28
−0.19
1.30E−06



Ube2j2
0.30
1.69E−44
0.00
9.68E−01



Kif3b
−0.10
1.34E−06
−0.03
2.61E−01



Brap
0.30
4.45E−28
0.01
8.00E−01



Gm8096



Ermn
1.01
 4.90E−162
−0.05
6.77E−01



Plagl2
−0.01
8.42E−01
−0.03
4.69E−01



Plek
−0.25
1.29E−15
0.20
5.12E−05



D030056l22rik
0.23
5.67E−14
0.18
5.19E−05



Ccr1
0.28
7.44E−31
0.20
6.92E−06



Krtcap2
−0.07
9.75E−06
0.14
1.66E−11



Sh2b1
0.28
5.19E−22
−0.14
9.77E−04



Abi3
0.97
 2.99E−212
−0.09
6.99E−02



Ccnl2
0.27
6.75E−30
−0.12
4.01E−04



Kbtbd7
0.01
7.26E−01
0.00
9.31E−01



Csf2
0.27
9.13E−25
0.10
3.81E−01



Pycard
−1.19
0.00E+00
−0.63
4.09E−86



Dock7
0.00
4.69E−01
0.00
9.89E−01



Herpud1
1.16
0.00E+00
0.13
1.68E−04



Arf6
0.39
 1.96E−101
0.04
1.73E−01



Zyx
−1.05
0.00E+00
−0.52
4.55E−41



Zfp91
0.25
9.43E−19
0.01
9.89E−01



Fam171b
0.00
9.50E−01
−0.02
2.29E−01



Maml2
−0.07
1.11E−02
−0.04
3.99E−01



Ifngr2
0.24
7.48E−36
0.07
2.88E−02



Bhlhe40
2.48
0.00E+00
0.02
4.83E−01



Cisd1
−0.22
1.92E−15
−0.23
3.43E−09



Zfp420
0.01
4.10E−01
0.01
6.99E−01



Zc3h12a
2.18
0.00E+00
0.27
2.84E−16



Plcg2
0.01
9.88E−01
−0.05
1.75E−02



2310036o22rik
−0.31
3.53E−60
−0.13
6.10E−06



Eif3c
−0.15
1.10E−11
−0.04
2.64E−01



Slc15a3
0.52
3.74E−74
0.26
8.00E−09



Acap3
−0.13
1.29E−08
−0.01
9.21E−01



Tef
0.21
2.35E−22
0.06
1.33E−01



Emp3
−1.21
0.00E+00
−0.34
2.78E−39



Ssr2
−0.40
1.17E−65
−0.20
9.50E−09



Usp1
−0.30
5.06E−26
−0.19
2.01E−06



Rpl10-ps3
−0.35
1.51E−57
−0.40
8.76E−41



Plcxd2
1.34
0.00E+00
−0.10
5.09E−02



Adcy7
0.01
8.47E−01
−0.18
2.99E−06



Irf1
0.18
1.70E−09
0.26
5.53E−11



Aamp
0.17
2.36E−13
0.15
2.87E−06



Gm8730
−0.08
1.81E−08
−0.61
 8.94E−278



Zgpat
−0.03
3.39E−01
−0.17
1.52E−05



St13
0.17
5.97E−12
0.22
1.00E−12



Cdc42se2
0.17
2.04E−12
−0.09
1.19E−02



Anxa2
−0.54
 2.39E−116
0.15
1.29E−05



Cpsf3l
−0.45
9.24E−61
−0.16
9.05E−05



Gm2000
−0.37
7.22E−67
−0.47
4.20E−62



Trim46
0.00
9.99E−01
−0.01
7.82E−01



Dusp16
0.15
3.73E−34
0.04
2.24E−01



Zmat5
−0.35
2.87E−41
−0.15
1.08E−04



Ptprk
−0.03
1.26E−01
−0.15
3.37E−06



Zdhhc7
−0.08
3.65E−03
0.00
9.65E−01



Il2
0.14
1.06E−05
0.06
2.32E−01



Msto1
−0.13
2.19E−07
−0.14
5.82E−06



Il10
0.14
2.17E−05
0.27
1.69E−08



Sbno2
0.14
2.71E−19
0.02
6.45E−01



Snx17
−0.21
2.10E−16
−0.14
1.67E−04



Kif11
−0.28
2.26E−31
−0.14
3.85E−07



Ndfip2
0.08
2.32E−03
−0.08
3.29E−02



Card9
−0.01
1.41E−01
0.00
8.89E−01



Lsm4
−0.35
5.60E−77
−0.25
6.16E−21



Ormdl3
0.13
1.24E−05
0.16
7.45E−05



S100a10
−0.84
0.00E+00
−0.03
1.80E−01



Notch2
−0.03
5.11E−01
−0.13
3.92E−03



Senp7
−0.20
5.37E−13
−0.12
1.26E−03



Cd48
−1.55
0.00E+00
−0.52
2.68E−69



Ssbp4
0.26
2.33E−29
−0.15
2.08E−06



Cul1
0.12
3.32E−05
−0.01
8.54E−01



Mettl10
−0.20
5.48E−13
−0.12
3.84E−03



Rabep2
−0.27
7.52E−23
−0.11
2.82E−03



Pkig
0.11
4.31E−08
0.06
1.22E−01



Desi1
0.11
3.42E−04
−0.11
9.85E−03



Furin
3.23
0.00E+00
0.30
1.88E−17



Tcof1
−0.40
4.30E−48
−0.11
1.01E−02



Glipr2
−1.36
0.00E+00
−0.43
3.68E−38



Tgfbr3
0.11
1.03E−08
0.00
9.89E−01



Tyk2
−0.09
6.73E−04
−0.10
4.23E−03



Kif21b
−0.27
1.72E−21
−0.10
1.08E−02



Tufm
−0.39
1.54E−46
−0.10
1.12E−02



Zmiz1
−0.23
2.23E−15
−0.10
1.92E−02



Il21
0.10
5.13E−06
0.07
1.23E−01



Ttpal
0.10
1.87E−04
−0.10
1.11E−02



Rps6kb1
0.10
5.80E−04
0.14
2.52E−04



Camk2g
−0.16
4.70E−08
−0.10
2.24E−02



Tom1
−0.06
1.33E−02
−0.10
4.27E−03



Actr1a
−0.19
3.12E−12
−0.10
2.29E−02



Rgs14
−0.39
3.10E−46
−0.10
2.57E−02



Ublcp1
−0.15
3.40E−09
−0.10
6.49E−03



Otud3
0.09
1.54E−07
0.00
9.81E−01



Tmem180
0.09
1.18E−05
0.01
8.13E−01



Ergic1
0.09
2.69E−04
0.05
3.21E−01



Aa467197
−0.49
3.65E−58
−0.16
3.18E−04



Tdp2
0.25
2.02E−16
0.08
1.26E−01



Rac1
−0.03
7.10E−02
−0.06
9.85E−03



Phlda3
−0.24
1.02E−25
0.04
3.99E−01



Trmt112
−0.22
2.35E−26
−0.09
7.80E−03



Ccny
0.07
1.27E−02
−0.08
5.36E−02



Slc43a3
−0.14
1.56E−10
−0.08
1.18E−03



Ezh2
−0.52
5.20E−63
−0.08
4.97E−02



Rps14
0.08
4.48E−27
0.00
9.98E−01



Spred2
0.08
2.35E−05
0.06
5.38E−02



Rn7s2



Rn7s1



Rpap2
−0.10
4.04E−05
−0.08
1.47E−02



Cit
−0.45
5.44E−71
−0.08
5.23E−03



Ascc2
−0.11
3.83E−06
−0.08
2.40E−02



Ksr1
−0.08
1.46E−04
−0.08
3.19E−03



Edem2
−0.33
1.05E−32
−0.08
7.89E−02



Blzf1
0.08
2.57E−03
0.08
4.28E−02



Ppp5c
−0.21
1.24E−13
−0.08
8.53E−02



Smurf1
0.08
1.11E−04
−0.04
2.94E−01



Nop9
−0.04
2.17E−01
−0.08
8.95E−02



Slc30a7
−0.27
1.11E−24
−0.08
4.46E−02



Tnfrsf8
0.01
2.34E−01
0.01
7.17E−01



Adcy3
−0.27
4.90E−33
−0.08
1.04E−02



Pdcd1
−0.14
5.58E−05
0.38
1.56E−12



Fen1
−0.29
1.27E−22
−0.07
8.71E−02



Themis
0.07
1.93E−02
−0.07
7.05E−02



Nudt22
−0.26
9.63E−24
−0.07
4.38E−02



Cyth1
0.07
1.27E−02
−0.01
9.32E−01



Tmbim1
0.07
5.46E04 
0.06
9.22E−02



Ndufaf1
−0.21
3.92E−16
−0.07
6.18E−02



Klrc1
0.33
8.00E−22
0.15
2.72E−03



Pomc
0.07
6.94E−06
−0.03
2.65E−01



Cpeb4
0.07
8.20E−05
0.04
2.26E−01



Cul2
0.07
1.47E−02
0.06
2.27E−01



Hgfac
−0.01
2.52E−02
0.00
6.98E−01



Pofut1
0.01
6.89E−01
−0.07
5.41E−02



Clasp2
−0.02
3.61E−01
−0.06
4.22E−02



Nme7
−0.15
1.54E−13
−0.06
1.67E−02



Ndst1
0.06
3.15E−07
−0.02
7.44E−01



Gpr137
0.06
3.32E−04
0.00
9.89E−01



Ncoa5
−0.18
2.59E−15
−0.06
8.44E−02



Mapkapk5
−0.01
5.29E−01
−0.06
3.66E−02



Auh
0.05
8.17E−02
−0.02
7.13E−01



Gpx3
0.05
1.20E−10
0.01
7.82E−01



Tmem116
0.00
4.95E−01
0.00
9.13E−01



Hint1
−0.21
1.37E−47
−0.05
2.25E−02



Mtmr3
0.05
5.19E−02
0.03
4.45E−01



Ube2l3
−0.05
1.87E−02
−0.05
9.69E−02



Il23r
0.05
2.13E−05
0.01
3.99E−01



Asb2
1.12
 3.45E−261
0.22
4.47E−08



Snx32
−0.14
2.89E−16
−0.05
2.48E−02



Fgfr1op
0.04
8.22E−02
−0.01
9.15E−01



Ccl2
0.04
4.18E−11
0.02
4.55E−01



Slc16a10
0.04
4.30E−05
−0.02
3.99E−01



Batf
0.76
 4.63E−195
−0.09
2.50E−02



Trpt1
0.04
7.43E−03
0.01
8.02E−01



Jazf1
0.04
1.18E−02
−0.02
3.32E−01



Tubd1
−0.14
2.33E−19
−0.04
2.75E−02



Rtel1
−0.08
8.41E−06
−0.04
3.22E−02



Srm
−0.46
6.71E−57
−0.08
5.19E−02



Thada
0.03
4.55E−02
0.04
3.99E−01



Tppp
0.03
3.23E−05
0.05
8.78E−04



Ppp4c
−0.27
3.36E−47
−0.24
1.20E−20



Per3
0.03
5.93E−02
0.00
8.86E−01



Hormad2
0.03
1.67E−04
−0.01
6.21E−01



Gm20186
1.13
 8.50E−290
−0.13
8.29E−03



Ccdc122
0.00
8.24E−01
−0.02
1.13E−02



Fasl
1.65
0.00E+00
0.26
4.15E−15



Sh2d2a
1.54
0.00E+00
−0.08
8.11E−03



Atp6v0a1
0.02
1.45E−02
0.01
9.38E−01



Fosl1
0.01
7.04E−05
0.01
2.56E−01



Itgb8
0.01
9.57E−02
0.01
4.42E−01



Amz1
0.01
2.39E−02
0.01
2.94E−01



Cxcl5
0.01
2.03E−04
0.00
3.64E−01



Nkx2-3
0.01
5.48E−04
0.01
1.81E−01



Thbs3
0.01
4.77E−03
0.02
4.17E−03



Pf4
0.01
7.65E−02
0.00
8.61E−01



Ephx4
0.00
8.43E−01
−0.01
9.78E−02



Osmr
0.00
2.42E−01
−0.01
3.74E−02



Ccl11
0.01
3.59E−03
0.01
1.30E−01



Fndc4
0.01
4.96E−03
0.01
4.45E−01



Ccl7
0.01
2.68E−03
0.01
2.94E−01



Ptrf
0.01
1.09E−02
0.01
5.60E−01



Mei1
0.00
4.07E−02
0.00
7.56E−01



Lamb1
0.00
1.95E−02
0.00
7.59E−01







Headings description (All logFC are log2 based):



Final Score: Total score used to rank genes



In-Vivo Cluster: Combined score for in-vivo cluster-specific results



In-Vivo Tissue: Combined score for in-vivo tissue-specific results



In-Vitro Summary: Combined score for in-vitro results



GWAS?: Whether or not the gene is associated with an IBD GWAS loci



LPL-9_logFC: logFC of the gene's expression in the LPL-9 cluster vs LPL remainder comparison



LPL-9_FDR: FDR value for the gene in the LPL-9 cluster vs LPL remainder comparison



LPL-9_Geno_logFC: logFC of the gene's expression in the LPL-9 within-cluster Wild Type vs Knockout comparison



LPL-9_Geno_FDR: FDR value for the gene in the LPL-9 within-cluster Wild Type vs Knockout comparison



LPL-2_logFC: logFC of the gene's expression in the LPL-2 cluster vs LPL remainder comparison



LPL-2_FDR: FDR value for the gene in the LPL-2 cluster vs LPL remainder comparison



LPL-2_Geno_logFC: logFC of the gene's expression in the LPL-2 within-cluster Wild Type vs Knockout comparison



LPL-2_Geno_FDR: FDR value for the gene in the LPL-2 within-cluster Wild Type vs Knockout comparison



logFC_LPL_TissueDE: logFC of the gene's expression in the LPL vs. Spleen comparison



FDR_LPL_TissueDE: FDR value for the gene in the LPL vs. Spleen comparison



LPL_Geno_logFC: logFC of the gene's expression in the within-LPL Wild Type vs Knockout comparison



LPL_Geno_FDR: FDR value for the gene in the within-LPL Wild Type vs Knockout comparison






Various modifications and variations of the described methods, pharmaceutical compositions, and kits of the invention will be apparent to those skilled in the art without departing from the scope and spirit of the invention. Although the invention has been described in connection with specific embodiments, it will be understood that it is capable of further modifications and that the invention as claimed should not be unduly limited to such specific embodiments. Indeed, various modifications of the described modes for carrying out the invention that are obvious to those skilled in the art are intended to be within the scope of the invention. This application is intended to cover any variations, uses, or adaptations of the invention following, in general, the principles of the invention and including such departures from the present disclosure come within known customary practice within the art to which the invention pertains and may be applied to the essential features herein before set forth.

Claims
  • 1. A method of treating an autoimmune disease caused by pathogenic Th1 cells comprising administering one or more agents capable of inhibiting the expression, activity and/or function of one or more genes selected from the group consisting of CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW.
  • 2. The method of claim 1, wherein the one or more agents inhibit the expression, activity and/or function of CD160.
  • 3. The method of claim 1, wherein the one or more agents inhibit the expression, activity and/or function of GPR18.
  • 4. The method of any one of claims 1 to 3, wherein the one or more agents comprises an antibody, antibody fragment, intrabody, small molecule, small molecule degrader, antibody-like protein scaffold, aptamer, polypeptide, genetic modifying agent, or any combination thereof.
  • 5. The method of claim 4, wherein the genetic modifying agent comprises an RNA-guided nuclease system, RNAi system, a zinc finger nuclease, a TALE, or a meganuclease.
  • 6. The method of claim 5, wherein the RNA-guided nuclease system is a CRISPR system or IscB system.
  • 7. The method of claim 6, wherein the CRISPR system comprises a CRISPR-Cas base editing system, a prime editor system, or a CAST system.
  • 8. A method of treating an autoimmune disease caused by pathogenic Th1 cells comprising administering Th1 cells modified to have decreased expression of IL-23R.
  • 9. A method of detecting a Th1 inflammatory response for diagnosis or monitoring of a treatment of a subject suffering from an autoimmune disease caused by colitogenic Th1 cells comprising detecting in a sample obtained from the subject Th1 cells expressing one or more genes selected from the group consisting of: a. IL23R, CD160, GPR18, GZMB, ITGB1, CCR3, GZMA, IL22, ZFP36L2, ZBTB38, CD74, CCR5, MAP3K8, TNFSF8, IFITM1, NFKBIZ, FOSL2, CREM, CCDC85B, FOS, GPR183, S100A4, 1110008F13RIK, LSP1, LITAF, CD7, DUSP2, PLAC8, H1F0, S1PR1, NCF4, SMIM3, TESC, RBMS1, LPXN, TNFRSF9, PMM1, TOB2, IFNG, CD226, and CTSW, wherein the expression of one or more genes are increased in an inflammatory response; orb. clusters 2, 9 and 7 in Table 3, wherein the expression of one or more genes or program from cluster 2 and/or 9 are increased in an inflammatory response and the expression of one or more genes or program in cluster 7 are decreased in an inflammatory response.
  • 10. The method of claim 9, wherein the treatment comprises one or more agents capable of inhibiting the expression, activity and/or function of CD160, GPR18, IL-23, or IL-12 and IL-23.
  • 11. The method of claim 9 or 10, wherein the Th1 cells are detected by immunohistochemistry (IHC), fluorescence activated cell sorting (FACS), fluorescently bar-coded oligonucleotide probes, RNA FISH (fluorescent in situ hybridization), RNA-seq, or any combination thereof.
  • 12. The method of claim 11, wherein the Th1 cell expression is inferred from bulk RNA-seq.
  • 13. The method of claim 11, wherein the Th1 cell expression is determined by single cell RNA-seq.
  • 14. The method of any of claims 9 to 13, wherein the sample is obtained by biopsy.
  • 15. The method of any of claims 1 to 14, wherein the autoimmune disease is inflammatory bowel disease (IBD) or type 1 diabetes.
  • 16. A method of obtaining IL-23R+ Th1 cells comprising differentiating naïve CD4+ T cells in vitro with IL-12 and IL-21.
  • 17. The method of claim 16, further comprising differentiating with IL-23.
  • 18. A method of treating cancer comprising administering to a subject in need thereof Th1 cells differentiated according to claim 16 or 17.
  • 19. The method of claim 18, wherein the naïve CD4+ T cells are obtained from the subject.
  • 20. A method of screening for drugs capable of shifting pathogenic Th1 cells to non-pathogenic Th1 cells comprising: a. treating Th1 cells obtained according to claim 16 or 17 with a drug candidate;b. detecting expression of one or more genes or program selected from cluster 2, 9 or 7 in Table 3; andc. identifying the drug, wherein the expression of one or more genes or program from cluster 2 or 9 decrease, and/or the expression of one or more genes or program in cluster 7 increase as compared to cells not contacted with the drug candidate.
CROSS-REFERENCE TO RELATED APPLICATIONS

This application claims the benefit of U.S. Provisional Application No. 63/140,458 filed Jan. 22, 2021. The entire contents of the above-identified applications are hereby fully incorporated herein by reference.

STATEMENT REGARDING FEDERALLY SPONSORED RESEARCH

This invention was made with government support under Grant Nos. AI073748, AI144166, AI056299, AI039671 awarded by the National Institutes of Health. The government has certain rights in the invention.

PCT Information
Filing Document Filing Date Country Kind
PCT/US22/13331 1/21/2022 WO
Provisional Applications (1)
Number Date Country
63140458 Jan 2021 US