MODULATION OF CANNABINOID PROFILE IN CANNABIS

Information

  • Patent Application
  • 20220002742
  • Publication Number
    20220002742
  • Date Filed
    August 15, 2019
    5 years ago
  • Date Published
    January 06, 2022
    2 years ago
Abstract
Provided is a Cannabis plant with reduced delta-9-tetrahydrocannabinol (THC) content, or reduced cannabidiol (CBD) content, or reduced THC and CBD content. According to a core aspect of the invention, the Cannabis plant comprises at least one targeted genome modification effective in decreasing expression of. at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof. Further disclose are methods for production of the Cannabis plants and use thereof.
Description
SEQUENCE LISTING

The Sequence Listing submitted in text format (.txt) filed on Jun. 30, 2021, named “SequenceListing.txt”, created on Jun. 25, 2021 (329 KB), is incorporated herein by reference.


FIELD OF THE INVENTION

The present invention relates generally to Cannabis plants with altered expression of cannabinoids and/or altered expression of cannabinoid synthesizing enzymes. More specifically, the present disclosure relates to methods for controlling genes associated with cannabinoids synthesis in Cannabis plants.


BACKGROUND OF THE INVENTION


Cannabis has been bred by many different cultures for various uses such as food, fiber and medicine since the dawn of agricultural societies. In the last few decades, Cannabis breeding has stopped as it became illegal and non-economic to do so. With the recent legislation converting Cannabis back to legality, there is a growing need for the implementation of new and advanced breeding techniques in future Cannabis breeding programs. This will allow speeding up the long process of classical breeding and accelerate reaching new and genetically improved Cannabis varieties for fiber, food and medicine products. Developing and implementing molecular biology tools to support the breeders, will allow creating new traits and tracking the movement of such desired traits across breeders germplasm.


According to some publications, the Cannabis plant chemical profile is composed of at least 483 known chemical compounds, which include cannabinoids, terpenoids, flavonoids, nitrogenous compounds, amino acids, proteins, glycoproteins, enzymes, sugars and related compounds, hydrocarbons, alcohols, aldehydes, ketones, acids, fatty acids, esters, lactones, steroids, terpenes, non-cannabinoid phenols, vitamins, and pigments.


Cannabinoids are of particular interest for research and commercialization. There are at least 113 different cannabinoids isolated from Cannabis, exhibiting varied effects. The classical cannabinoids are concentrated in a viscous resin produced in structures known as glandular trichomes. The most notable cannabinoid is the phytocannabinoid delta 9 tetrahydrocannabinol (THC), the primary psychoactive compound in Cannabis. Cannabidiol (CBD) is another major constituent of the plant.


Other cannabinoids of interest include, Cannabigerol (CBG), Cannabigerolic Acid (CBGA), Cannabinol (CBN), Cannabichromene (CBC), Tetrahydrocannabivarin (THCV), Cannabigerovarin (CBGV), Cannabigerovarinic Acid (CBGVA), tetrahydrocannabinolic acid (THCA), cannabidiolic acid (CBDA), cannabichromene (CBC), cannabicyclol (CBL), cannabivarin (CBV), cannabidivarin (CBDV), cannabichromevarin (CBCV), cannabigerol monomethyl ether (CBGM), cannabielsoin (CBE) and cannabicitran (CBT).



Cannabis plants can exhibit wide variation in the quantity and type of cannabinoids they produce. The mixture of cannabinoids produced by a plant is known as the plant's cannabinoid profile. Selective breeding has been used to control the genetics of plants and modify the cannabinoid profile. For example, strains that are used as fiber (commonly called hemp) are usually bred such that they are low in psychoactive chemicals like THC. Strains used in medicine are often bred for high CBD content, and strains used for recreational purposes are usually bred for high THC content or for a specific chemical balance.


Quantitative analysis of a plant's cannabinoid profile is often determined by analytical methods such as gas chromatography (GC), gas chromatography combined with mass spectrometry (GC/MS) and liquid chromatography (LC) techniques.


A variety of growing and cultivating techniques have been developed for increasing the production of secondary compounds within plants of genus Cannabis. These techniques include outdoor cultivation, indoor cultivation, hydroponics, fertilization, atmospheric manipulation, cloning, crossbreeding etc. There is very limited if any molecular tools supporting or leading the breeding process. Traditional Cannabis breeding is done by mixing breeding material with hope to find the desired traits and phenotypes by random crosses. These methods have allowed the construction of the leading Cannabis varieties on the market today.


As the cultivation of Cannabis intensifies, breeding and farming techniques fail to provide the level of control of cannabinoid production and yield needed. Cannabinoid research is still new and having plants producing modified levels of certain cannabinoids would be advantageous for research and medical purposes. Furthermore, separating and isolating specific molecules of the plant out of hundreds could be challenging and time consuming.


In view of the above there is an unmet and long felt need for non-GMO, advanced breeding of Cannabis plants producing particular amounts of predetermined cannabinoids. In particular, there is a need for Cannabis plants selectively producing predetermined ratios and/or concentrations of cannabinoids for medical use.


SUMMARY OF THE INVENTION

It is one object of the present invention to disclose a Cannabis plant with reduced delta-9-tetrahydrocannabinol (THC) content, or reduced cannabidiol (CBD) content, or reduced THC and CBD content, wherein said plant comprises at least one targeted genome modification effective in decreasing expression of a at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined above, wherein said plant comprises reduced THC content, or reduced CBD content, or reduced THC and CBD content relative to a Cannabis plant of a similar genotype or genetic background that does not comprise said targeted genome modification.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said targeted genome modification is located in the cannabinoid biosynthesis enzyme gene locus.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said targeted genome modification interrupts or interferes with or down regulate or silence transcription and/or translation of said Cannabis gene encoding said cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant comprises an endonuclease enzyme targeting a nucleic acid sequence coding for said at least one cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant does not comprise within its genome exogenous genetic material and said plant is a non-naturally occurring Cannabis plant or cell thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the nucleotide sequence encoding said at least one cannabinoid biosynthesis enzyme is selected from the group consisting of: CsTHCAS having a genomic nucleotide sequence as set forth in SEQ ID NO:1 or a functional variant thereof, CsCBDAS having a genomic nucleotide sequence as set forth in SEQ ID NO:4 or a functional variant thereof, CsPT having a genomic nucleotide sequence as set forth in SEQ ID NO:7 or a functional variant thereof, CsOLS having a genomic nucleotide sequence as set forth in SEQ ID NO:10 or a functional variant thereof and CsAAE1 having a genomic nucleotide sequence as set forth in SEQ ID NO:13 or a functional variant thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said functional variant has at least 75% sequence identity to the nucleotide sequence of said cannabinoid biosynthesis enzyme or a codon degenerate nucleotide sequence thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has decreased expression levels of at least one of CsTHCAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:3 or a conservatively substituted amino acid sequence thereof, CsCBDAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:6 or a conservatively substituted amino acid sequence thereof, CsPT protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:9 or a conservatively substituted amino acid sequence thereof, CsOLS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:12 or a conservatively substituted amino acid sequence thereof, and CsAAE1 protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:15 or a conservatively substituted amino acid sequence thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said Cannabis plant has modulated expression of one or more of the cannabinoids, optionally cannabigerolic acid, cannabigerol, DELTA.9-tetrahydrocannabinolic acid, cannabidiolic acid, cannabichromenic acid, DELTA.9-tetrahydrocannabinol, cannabidiol, cannabichromene, THC, D9-THC, D8-THC, THCA, THCV, D8-THCV, D9-THCV, THCVA, CBD, CBDA, CBDV, CBDVA, CBC, CBCA, CBCV, CBCVA, CBG, CBGA, CBGV, CBGVA, CBN, CBNA, CBNV, CBNVA, CBND, CBNDA, CBNDV, CBNDVA, CBE, CBEA, CBEV, CBEVA, CBL, CBLA, CBLV, or CBLVA and cannabidiol.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said Cannabis plant has reduced expression of one or more of the cannabinoids, optionally cannabigerolic acid, cannabigerol, DELTA.9-tetrahydrocannabinolic acid, cannabidiolic acid, cannabichromenic acid, DELTA.9-tetrahydrocannabinol, cannabidiol, cannabichromene, THC, D9-THC, D8-THC, THCA, THCV, D8-THCV, D9-THCV, THCVA, CBD, CBDA, CBDV, CBDVA, CBC, CBCA, CBCV, CBCVA, CBG, CBGA, CBGV, CBGVA, CBN, CBNA, CBNV, CBNVA, CBND, CBNDA, CBNDV, CBNDVA, CBE, CBEA, CBEV, CBEVA, CBL, CBLA, CBLV, or CBLVA and cannabidiol, as compared to a Cannabis plant of a similar genotype or genetic background that does not comprise said targeted genome modification.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said targeted genome modification is introduced using CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and CRISPR-associated (Cas) genes (CRISPR/Cas) system, Transcription activator-like effector nuclease (TALEN), Zinc Finger Nuclease (ZFN), meganuclease or any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said CRISPR/Cas genes or proteins are selected from the group consisting of Cas3, Cas4, Cas5, Cas5e (or CasD), Cash, Cas6e, Cas6f, Cas7, Cas8a1, Cas8a2, Cas8b, Cas8c, Cas9, Cast 0, Castl Od, Cas12, Cas13, Cas14, CasX, CasF, CasG, CasH, Csy1, Csy2, Csy3, Cse1 (or CasA), Cse2 (or CasB), Cse3 (or CasE), Cse4 (or CasC), Csc1, Csc2, Csa5, Csn1, Csn2, Csm2, Csm3, Csm4, Csm5, Csm6, Cmr1, Cmr3, Cmr4, Cmr5, Cmr6, Cpf1, Csb 1, Csb2, Csb3, Csx17, Csx14, Csx10, Csx16, CsaX, Csx3, Csz1, Csx15, Csf1, Csf2, Csf3, Csf4, and Cu1966.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said targeted genome modification is introduced via (i) at least one RNA-guided (gRNA) endonuclease or nucleic acid encoding at least one RNA-guided endonuclease, and (ii) at least one guide RNA (gRNA) or DNA encoding at least one guide RNA (gRNA), further wherein each of said at least one gRNA directs said endonuclease to a targeted site located in the genomic sequence of said at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the gRNA nucleotide sequence targeted to CsTHCAS genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 16-167 and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the gRNA nucleotide sequence targeted to CsCBDAS genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 168-304, SEQ. ID. NO.: 824-825, and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the gRNA nucleotide sequence targeted to CsPT genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 305-458 and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the gRNA nucleotide sequence targeted to CsOLS genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 459-509 and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the gRNA nucleotide sequence targeted to CsAAE1 genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 510-823, SEQ. ID. NO.: 826, and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant is mutated in a gene selected from the group consisting of CsTHCAS, CsSP, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said mutated CsTHCAS, CsSP, CsCBDAS, CsPT, CsOLS and/or CsAAE1 gene is a CRISPR/Cas9-induced heritable mutated allele.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said genome modification is a missense mutation, nonsense mutation, insertion, deletion, indel, substitution or duplication.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein the insertion or the deletion produces a gene comprising a frameshift.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant is homozygous for said at least one mutated gene.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said mutation is in the coding region of said gene, a mutation in the regulatory region of said gene, a mutation in a gene downstream of said gene in the cannabinoid biosynthesis pathway or an epigenetic factor.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said mutation is a silencing mutation, a knockdown mutation, a knockout mutation, a loss of function mutation or any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said genome modification is generated in planta.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above wherein said genome modification is generated in planta via introduction of a construct comprising (a) Cas DNA and gRNA sequence selected from the group consisting of SEQ ID NO:16-SEQ ID NO:826 and any combination thereof, or (b) a ribonucleoprotein (RNP) complex comprising Cas protein and gRNA sequence selected from the group consisting of SEQ ID NO:16-826 and any combination thereof.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above wherein said gRNA sequence comprises a 3′ NGG Protospacer Adjacent Motif (PAM).


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above wherein said gRNA is introduced into the plant cells via Agrobacterium infiltration, virus based plasmids for delivery of the genome editing molecules or mechanical insertion such as polyethylene glycol (PEG) mediated DNA transformation, electroporation or gene gun biolistics.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above wherein said Cannabis plant is selected from the group of species that includes, but is not limited to, Cannabis sativa (C. sativa), C. indica, C. ruderalis and any hybrid or cultivated variety of the genus Cannabis.


It is a further object of the present invention to disclose a Cannabis plant, plant part or plant cell as defined in any of the above wherein said plant does not comprise a transgene.


It is a further object of the present invention to disclose a plant part, plant cell or plant seed of a plant as defined in any of the above.


It is a further object of the present invention to disclose a tissue culture of regenerable cells, protoplasts or callus obtained from the Cannabis plant as defined in any of the above.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above wherein said plant genotype is obtainable by deposit under accession number with NCIMB Aberdeen AB21 9YA, Scotland, UK, or wherein said plant genotype is obtainable by deposit under accession number with ATCC, LGC Standards, Queens Road Teddington Middlesex TW11 OLY UK.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said Cannabis plant comprises a DNA encoding an antisense RNA or a siRNA effective to suppress expression of CsTHCAS, CsSP, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof, the DNA operably linked to a heterologous promoter, wherein the Cannabis plant comprises reduced THC content, reduced CBD content, or decreased THC and CBD content relative to a Cannabis plant of a similar genotype that does not comprise the DNA.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said Cannabis plant has a THC content of up to 30% by weight, particularly between about %0.1 to about 30% by weight, more particularly between about %0.3 to about 30%, even more particularly between about %0.3 to about 10% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said Cannabis plant has a CBD content of up to 30% by weight, particularly between about %0.1 to about 30% by weight, more particularly between about %0.3 to about 30%, even more particularly between about %0.3 to about 10% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or CBD content of not more than about 0.5% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant is THC free.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has at least one targeted genome modification in at least one Cannabis gene encoding cannabinoid precursor synthesis enzyme selected from the group consisting of CsAAE, CsPT and CsOLS.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant exhibits reduced expression of THC, CBD or both relative to a Cannabis plant of a similar genotype or genetic background lacking said targeted genome modification.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or CBD content of up to 30% by weight, particularly between about %0.1 to about 30% by weight, more particularly between about %0.3 to about 30%, even more particularly between about %0.3 to about 10% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or CBD content of not more than about 0.5% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has at least one targeted genome modification in at least one Cannabis gene encoding cannabinoid synthesis enzyme selected from the group consisting of CsTHCAS and CsCBDAS.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has at least one targeted genome modification in CsTHCAS and said plant exhibits reduced expression of THCA or THC, and elevated expression of CBD or CBDA relative to a Cannabis plant of a similar genotype or genetic background lacking said targeted genome modification.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or THCA content of up to 30% by weight, particularly between about %0.1 to about 30% by weight, more particularly between about %0.3 to about 30%, even more particularly between about %0.3 to about 10% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or THCA content of not more than about 0.5% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has at least one targeted genome modification in CsCBDAS and said plant exhibits reduced expression of CBDA or CBD, and elevated expression of THC or THCA relative to a Cannabis plant of a similar genotype or genetic background lacking said targeted genome modification.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or CBD content of up to 30% by weight, particularly between about %0.1 to about 30% by weight, more particularly between about %0.3 to about 30%, even more particularly between about %0.3 to about 10% by weight.


It is a further object of the present invention to disclose the Cannabis plant as defined in any of the above, wherein said plant has a CBD and/or CBDA content of not more than about 0.5% by weight.


It is a further object of the present invention to disclose a Cannabis plant derived product from the plant as defined in any of the above.


It is a further object of the present invention to disclose the Cannabis plant derived product as defined above, comprising a combined cannabidiolic acid and cannabidiol concentration of about 0.3% to about 30% by weight.


It is a further object of the present invention to disclose the Cannabis plant derived product as defined in any of the above, comprising a combined delta-9-tetrahydrocannabinol and tetrahydrocannabinolic acid concentration of between about 0.3% to about 30% by weight.


It is a further object of the present invention to disclose the Cannabis plant derived product as defined in any of the above, comprising Cannabis oil, Cannabis tincture, dried Cannabis flowers, and/or dried Cannabis leaves.


It is a further object of the present invention to disclose the Cannabis plant derived product as defined in any of the above, for medical use.


It is a further object of the present invention to disclose the Cannabis plant derived product as defined in any of the above, formulated for inhalation, oral consumption, sublingual consumption, or topical consumption.


It is a further object of the present invention to disclose a medical composition derived from the plant as defined in any of the above.


It is a further object of the present invention to disclose a method for producing a Cannabis plant with reduced delta-9-tetrahydrocannabinol (THC) content, or reduced cannabidiol (CBD) content, or reduced THC and CBD content, wherein said method comprises steps of introducing into said Cannabis plant genome or a cell thereof at least one targeted genome modification effective in decreasing expression of a at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), aromatic prenyltransferase (PT), olivetol synthase (OLS), acyl-activating enzyme 1 (AAE1) and any combination thereof.


It is a further object of the present invention to disclose the method as defined above, further comprising steps of: (a) constructing an endonuclease enzyme targeting a nucleic acid sequence coding for a cannabinoid biosynthesis enzyme selected from the group consisting of CsTHCAS, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof; (b) introducing the endonuclease enzyme into the genome of the Cannabis plant of; and (c) decreasing expression of the at least one cannabinoid biosynthesis enzyme within the genome.


It is a further object of the present invention to disclose the method as defined in any of the above, further comprising steps of: (a) introducing into the Cannabis plant or a cell thereof (i) at least one RNA-guided endonuclease or nucleic acid encoding at least one RNA-guided endonuclease, and (ii) at least one guide RNA (gRNA) or DNA encoding at least one gRNA; (b) assaying the Cannabis plant or a cell thereof for an endonuclease-mediated modification in the DNA of said at least one Cannabis cannabinoid biosynthesis enzyme gene locus; and (c) identifying the Cannabis plant, or a cell thereof, or a progeny cell thereof as comprising a modification in said at least one gene locus.


It is a further object of the present invention to disclose the method as defined in any of the above, further comprising steps of culturing the Cannabis plant or cell thereof such that each guide RNA directs an RNA-guided endonuclease to a targeted site in the chromosomal sequence of said at least one Cannabis cannabinoid biosynthesis enzyme, enabling the RNA-guided endonuclease introduce a double-stranded break in the targeted site, and repair of the double-stranded break by a DNA repair process such that the chromosomal sequence is modified, wherein the targeted site is located in the gene locus of the at least one Cannabis cannabinoid biosynthesis enzyme and the chromosomal modification interrupts or interferes with transcription and/or translation of said at least one gene encoding Cannabis cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein the endonuclease enzyme is a CRISPR/Cas9 system.


It is a further object of the present invention to disclose the method as defined in any of the above, comprising steps of interfering with expression of a cannabinoid biosynthesis enzyme selected from the group consisting of CsTHCAS, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said plant comprises reduced THC content, or reduced CBD content, or reduced THC and CBD content relative to a Cannabis plant of a similar genotype or genetic background that does not comprise said targeted genome modification.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said targeted genome modification is located in the cannabinoid biosynthesis enzyme gene locus.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said targeted genome modification interrupts or interferes with or down regulate or silence transcription and/or translation of said Cannabis gene encoding said cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said plant comprises an endonuclease enzyme targeting a nucleic acid sequence coding for said at least one cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said plant does not comprise within its genome exogenous genetic material and said plant is a non-naturally occurring Cannabis plant or cell thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein the nucleotide sequence encoding said at least one cannabinoid biosynthesis enzyme is selected from the group consisting of: CsTHCAS having a genomic nucleotide sequence as set forth in SEQ ID NO:1 or a functional variant thereof, CsCBDAS having a genomic nucleotide sequence as set forth in SEQ ID NO:4 or a functional variant thereof, CsPT having a genomic nucleotide sequence as set forth in SEQ ID NO:7 or a functional variant thereof, CsOLS having a genomic nucleotide sequence as set forth in SEQ ID NO:10 or a functional variant thereof and CsAAE1 having a genomic nucleotide sequence as set forth in SEQ ID NO:13 or a functional variant thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said functional variant has at least 75% sequence identity to the nucleotide sequence of said cannabinoid biosynthesis enzyme or a codon degenerate nucleotide sequence thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said plant has decreased expression levels of at least one of CsTHCAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:3 or a conservatively substituted amino acid sequence thereof, CsCBDAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:6 or a conservatively substituted amino acid sequence thereof, CsPT protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:9 or a conservatively substituted amino acid sequence thereof, CsOLS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:12 or a conservatively substituted amino acid sequence thereof, and CsAAE1 protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:15 or a conservatively substituted amino acid sequence thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said Cannabis plant has modulated expression of one or more of the cannabinoids, optionally cannabigerolic acid, cannabigerol, DELTA. 9-tetrahydrocannabinolic acid, cannabidiolic acid, cannabichromenic acid, DELTA. 9-tetrahydrocannabinol, cannabidiol, cannabichromene, THC, D9-THC, D8-THC, THCA, THCV, D8-THCV, D9-THCV, THCVA, CBD, CBDA, CBDV, CBDVA, CBC, CBCA, CBCV, CBCVA, CBG, CBGA, CBGV, CBGVA, CBN, CBNA, CBNV, CBNVA, CBND, CBNDA, CBNDV, CBNDVA, CBE, CBEA, CBEV, CBEVA, CBL, CBLA, CBLV, or CBLVA and cannabidiol.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said Cannabis plant has reduced expression of one or more of the cannabinoids, optionally cannabigerolic acid, cannabigerol, DELTA. 9-tetrahydrocannabinolic acid, cannabidiolic acid, cannabichromenic acid, DELTA. 9-tetrahydrocannabinol, cannabidiol, cannabichromene, THC, D9-THC, D8-THC, THCA, THCV, D8-THCV, D9-THCV, THCVA, CBD, CBDA, CBDV, CBDVA, CBC, CBCA, CBCV, CBCVA, CBG, CBGA, CBGV, CBGVA, CBN, CBNA, CBNV, CBNVA, CBND, CBNDA, CBNDV, CBNDVA, CBE, CBEA, CBEV, CBEVA, CBL, CBLA, CBLV, or CBLVA and cannabidiol, as compared to a Cannabis plant of a similar genotype or genetic background that does not comprise said targeted genome modification.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said targeted genome modification is introduced using CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and CRISPR-associated (Cas) genes (CRISPR/Cas) system, Transcription activator-like effector nuclease (TALEN), Zinc Finger Nuclease (ZFN), meganuclease or any combination thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said CRISPR/Cas genes or proteins are selected from the group consisting of Cas3, Cas4, Cas5, Cas5e (or CasD), Cash, Cas6e, Cas6f, Cas7, Cas8a1, Cas8a2, Cas8b, Cas8c, Cas9, Cas10, Cast10d, Cas12, Cas13, Cas14, CasX, CasF, CasG, CasH, Csy1, Csy2, Csy3, Cse1 (or CasA), Cse2 (or CasB), Cse3 (or CasE), Cse4 (or CasC), Csc1, Csc2, Csa5, Csn1, Csn2, Csm2, Csm3, Csm4, Csm5, Csm6, Cmr1, Cmr3, Cmr4, Cmr5, Cmr6, Cpf1, Csb1, Csb2, Csb3, Csx17, Csx14, Csx10, Csx16, CsaX, Csx3, Csz1, Csx15, Csf1, Csf2, Csf3, Csf4, and Cu1966.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said targeted genome modification is introduced via (i) at least one RNA-guided (gRNA) endonuclease or nucleic acid encoding at least one RNA-guided endonuclease, and (ii) at least one guide RNA (gRNA) or DNA encoding at least one guide RNA (gRNA), further wherein each of said at least one gRNA directs said endonuclease to a targeted site located in the genomic sequence of said at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein (a) the gRNA nucleotide sequence targeted to CsTHCAS genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 16-167 and any combination thereof; (b) the gRNA nucleotide sequence targeted to CsCBDAS genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 168-304, SEQ. ID. NO.: 824-825, and any combination thereof; (c) the gRNA nucleotide sequence targeted to CsPT genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 305-458 and any combination thereof; (d) the gRNA nucleotide sequence targeted to CsOLS genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 459-509 and any combination thereof; and (e) the gRNA nucleotide sequence targeted to CsAAE1 genomic sequence is as set forth in nucleotide sequence selected from the group consisting of SEQ. ID. NO.: 510-823, SEQ. ID. NO.: 826, and any combination thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said plant is mutated in a gene selected from the group consisting of CsTHCAS, CsSP, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said at least one genome modification is generated in planta.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said genome modification is generated in planta via introduction of a construct comprising (a) Cas DNA and gRNA sequence selected from the group consisting of SEQ ID NO:16-SEQ ID NO:826 and any combination thereof, or (b) a ribonucleoprotein (RNP) complex comprising Cas protein and gRNA sequence selected from the group consisting of SEQ ID NO:16-826 and any combination thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said gRNA is introduced into the plant cells via Agrobacterium infiltration, virus based plasmids for delivery of the genome editing molecules or mechanical insertion such as polyethylene glycol (PEG) mediated DNA transformation, electroporation or gene gun biolistics.


It is a further object of the present invention to disclose a plant part, plant cell or plant seed produced by the method as defined in any of the above.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein said Cannabis plant comprises a DNA encoding an antisense RNA or a siRNA effective to suppress expression of CsTHCAS, CsSP, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof, the DNA operably linked to a heterologous promoter, wherein the Cannabis plant comprises reduced THC content, reduced CBD content, or decreased THC and CBD content relative to a Cannabis plant of a similar genotype that does not comprise the DNA.


It is a further object of the present invention to disclose a method for producing a medical Cannabis composition, the method comprising: (a) obtaining the Cannabis plant of claim 1; and (b) formulating a medical Cannabis composition from said plant.


It is a further object of the present invention to disclose a method for manipulating a content of one or more cannabinoids in a Cannabis plant, the method comprising down-regulating activity of at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), aromatic prenyltransferase (PT), olivetol synthase (OLS), acyl-activating enzyme 1 (AAE1) and any combination thereof.


It is a further object of the present invention to disclose the method as defined in any of the above, comprises steps of: (a) identifying at least one Cannabis gene locus encoding a cannabinoid biosynthesis enzyme selected from the group consisting of tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), aromatic prenyltransferase (PT), olivetol synthase (OLS), acyl-activating enzyme 1 (AAE1) and any combination thereof; (b) identifying at least one endonuclease recognition sequence in or proximal to the at least one cannabinoid biosynthesis enzyme gene locus; (c) providing at least one guide RNA (gRNA) comprising a nucleotide sequence at least partially complementary to said at least one identified gene locus; (d) introducing into Cannabis plant cells a construct comprising (i) an endonuclease nucleotide sequence operably linked to said gRNA, or (ii) a ribonucleoprotein (RNP) complex comprising an endonuclease protein and said gRNA; (e) assaying the Cannabis plant or a cell thereof for an endonuclease-mediated modification in the DNA of the at least one cannabinoid biosynthesis enzyme gene locus; and (f) identifying the Cannabis plant, a cell thereof, or a progeny cell thereof as comprising a modification in the at least one cannabinoid biosynthesis enzyme gene locus.


It is a further object of the present invention to disclose the method as defined in any of the above, further comprises steps of (a) screening the genome of the transformed Cannabis plant cells for induced targeted mutations in at least one of said cannabinoid biosynthesis enzyme gene locus comprising obtaining a nucleic acid sample from said transformed plant and carrying out nucleic acid amplification and optionally restriction enzyme digestion to detect a mutation in said at least one of said cannabinoid biosynthesis enzyme gene locus; (b) confirming the presence of said genetic mutation in the genome of said plant cells by sequencing said at least one cannabinoid biosynthesis enzyme gene locus; (c) regenerating plants carrying said genetic modification; and (d) screening said regenerated plants for a plant with modified cannabinoid content.


It is a further object of the present invention to disclose the method as defined in any of the above, wherein the endonuclease is expressed transiently or stably in the Cannabis plant.


It is a further object of the present invention to disclose an isolated nucleotide sequence having at least 75% sequence identity to a nucleotide sequence selected from the group consisting of SEQ ID NO:1, SEQ ID NO:4, SEQ ID NO:7, SEQ ID NO:10, and SEQ ID NO:13.


It is a further object of the present invention to disclose an isolated nucleotide sequence having at least 75% sequence identity to a nucleotide sequence selected from the group consisting of SEQ ID NO:2, SEQ ID NO:5, SEQ ID NO:8, SEQ ID NO:11 and SEQ ID NO:14.


It is a further object of the present invention to disclose an isolated amino acid sequence having at least 75% sequence identity to an amino acid sequence selected from the group consisting of SEQ ID NO:3, SEQ ID NO:6, SEQ ID NO:9, SEQ ID NO:12 and SEQ ID NO:15.


It is a further object of the present invention to disclose an isolated nucleotide sequence having at least 75% sequence identity to a nucleotide sequence as set forth in SEQ ID NO:16-826.


It is a further object of the present invention to disclose a vector, construct or expression system or cassette comprising the nucleic acid sequence as defined in any one of claims 90-93.


It is a further object of the present invention to disclose use of a nucleotide sequence as set forth in at least one of SEQ ID NO:16-826 and any combination thereof for down regulation of at least one Cannabis cannabinoid biosynthesis enzyme gene selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof.


It is a further object of the present invention to disclose use of a nucleotide sequence as set forth in at least one of SEQ ID NO:16-167 and any combination thereof for targeted genome modification of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS) gene.


It is a further object of the present invention to disclose use of a nucleotide sequence as set forth in at least one of SEQ ID NO:168-304, SEQ ID NO:824-825, and any combination thereof for targeted genome modification of Cannabis cannabidiolic acid synthase (CsCBDAS).


It is a further object of the present invention to disclose use of a nucleotide sequence as set forth in at least one of SEQ ID NO:305-458 and any combination thereof for targeted genome modification of Cannabis aromatic prenyltransferase (CsPT).


It is a further object of the present invention to disclose use of a nucleotide sequence as set forth in at least one of SEQ ID NO:459-509 and any combination thereof for targeted genome modification of Cannabis olivetol synthase (CsOLS).


It is a further object of the present invention to disclose use of a nucleotide sequence as set forth in at least one of SEQ ID NO:510-823, SEQ ID NO:826, and any combination thereof for targeted genome modification of Cannabis acyl-activating enzyme 1 (CsAAE1).





BRIEF DESCRIPTION OF THE DRAWINGS

Non-limiting examples of embodiments of the disclosure are described below with reference to figures attached hereto that are listed following this paragraph. Identical features that appear in more than one figure are generally labeled with a same label in all the figures in which they appear. A label labeling an icon representing a given feature of an embodiment of the disclosure in a figure may be used to reference the same given feature in other embodiments. Dimensions of features shown in the figures are chosen for convenience and clarity of presentation and are not necessarily shown to scale.


The invention, features and advantages thereof, may best be understood by reference to the following detailed description when read with the accompanied drawings. Embodiments of the invention are illustrated by way of example and not limitation in the figures of the accompanying drawings, in which like reference numerals indicate corresponding, analogous or similar elements, and in which:



FIG. 1 is schematically presenting CRISPR/Cas9 mode of action as depicted by Xie, Kabin, and Yinong Yang. “RNA-guided genome editing in plants using a CRISPRtCas system.” Molecular plant 6.6 (2013): 1975-1983;



FIG. 2 is schematically illustrating the cannabinoid biosynthesis pathway as depicted by the C. sativa (Cannabis) Genome Browser internet site;



FIG. 3 is photographically presenting staining of Cannabis plants after transient GUS transformation of (A) axillary buds (B) leaf (C) calli, and (D) cotyledons;



FIG. 4 is presenting regenerated transformed Cannabis tissue;



FIG. 5 is photographically presenting PCR detection of Cas9 DNA in shoots of Cannabis plants transformed using biolistics; and



FIG. 6 is illustrating in vitro cleavage activity of CRISPR/Cas9; (A) a scheme of genomic area targeted for editing, and (B) a gel showing digestion of PCR amplicon containing RNP complex of Cas9 and gene specific gRNA.





It will be appreciated that, for simplicity and clarity of illustration, elements shown in the figures have not necessarily been drawn accurately or to scale. For example, the dimensions of some of the elements may be exaggerated relative to other elements for clarity, or several physical components may be included in one functional block or element. Further, where considered appropriate, reference numerals may be repeated among the figures to indicate corresponding or analogous elements.


DETAILED DESCRIPTION OF THE INVENTION

In the following detailed description, numerous specific details are set forth in order to provide a thorough understanding of the invention. However, it will be understood by those skilled in the art that the present invention may be practiced without these specific details. In other instances, well-known methods, procedures, and components, modules, units and/or circuits have not been described in detail so as not to obscure the invention. Some features or elements described with respect to one embodiment may be combined with features or elements described with respect to other embodiments. For the sake of clarity, discussion of same or similar features or elements may not be repeated.


In the following detailed description of the preferred embodiments, reference is made to the accompanying drawings that form a part hereof, and in which are shown by way of illustration specific embodiments in which the invention may be practiced. It is understood that other embodiments may be utilized and structural changes may be made without departing from the scope of the present invention. The present invention may be practiced according to the claims without some or all of these specific details. For the purpose of clarity, technical material that is known in the technical fields related to the invention has not been described in detail so that the present invention is not unnecessarily obscured.


The present invention discloses manipulation of the biosynthesis pathways of a Cannabis plant of genus Cannabis. Accordingly, Cannabis plants of the present invention having a modified therapeutic component(s) profile may be useful in the production of medical Cannabis and/or may also be useful in the production of specific components or therapeutic formulations derived therefrom.


According to other main aspects of the present invention, THC free (e,g, hemp) plants for seeds, fiber and/or medical use are produced.


According to a main embodiment, the present invention provides a Cannabis plant with reduced delta-9-tetrahydrocannabinol (THC) content, or reduced cannabidiol (CBD) content, or reduced THC and CBD content, wherein said plant comprises at least one targeted genome modification effective in decreasing expression of a at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof.


According to one embodiment of the present invention, genes encoding cannabinoid precursor synthesis enzymes, namely AAE, PT and OLS are down regulated using targeted genome modification (e.g. gene editing techniques as inter alia presented). These enzymes are responsible for the production of a main cannabinoid precursor cannabigerolic acid (CBGA).


The final steps catalysing the synthesis of major active cannabinoids, namely, cannabichromenic acid (CBCA), cannabidiolic acid (CBDA) and Δ9-tetrahydrocannabinolic acid (THCA), are performed by oxidocyclases, namely, CBCA synthase (CBCAS), CBDA synthase (CBDAS) and THCA synthase (THCAS).


According to a further embodiment of the present invention, cannabinoid biosynthesis enzymes namely cannabidiolic acid (CBDA) synthase (CBDAS) and/or 49-tetrahydrocannabinolic acid (THCA) synthase (THCAS) are down regulated using targeted genome modification (e.g. gene editing techniques as inter alia presented). As a result, the production of the major cannabinoids CBDA (converted into CBD by decarboxylation) and/or THCA (converted into THC by decarboxylation) is significantly reduced and/or totally abolished.


Thus, according to one embodiment, targeted genome modification of one or more of the herein identified Cannabis genes encoding cannabinoid precursor synthesis enzymes, namely, CsAAE, CsPT and CsOLS, negatively affects the production of the cannabinoid precursor CBGA. As a result Cannabis plants with reduced content, or free of, THCA (and/or THC) and reduced content or free of CBDA (and/or CBD) are provided by the present invention.


According to a further embodiment of the present invention, targeted genome modification of the herein identified Cannabis gene encoding cannabinoid synthesis enzyme CsTHCAS results in reduced or no production of THCA and thus Cannabis plants with reduced content, or free of, THCA and/or THC are provided by the present invention.


According to a further embodiment of the present invention, targeted genome modification of the herein identified Cannabis gene encoding cannabinoid synthesis enzyme CsCBDAS results in reduced or no production of CBDA and thus Cannabis plants with reduced content, or free of, CBDA and/or CBD are provided by the present invention.


Breeding Cannabis plants is currently mostly done by small Cannabis growers. There is very limited if any molecular tools supporting or leading the breeding process. Traditional Cannabis breeding is done by mixing breeding material with hope to find the desired traits and phenotypes in random crosses. These methods have allowed the construction of the leading Cannabis varieties on the market today. During the last few decades, most of the breeding was focused on the psychoactive phytochemicals of the Cannabis plant. These phytochemicals, known as cannabinoids, are the compounds responsible for the medical attributes of the Cannabis plant.


As the medical Cannabis pharmaceutical industry is focusing on developing new cannabinoid based drugs, and these are mostly extracted from the Cannabis plant, there is a growing need for Cannabis plants bred for producing high levels of specific cannabinoids. In addition, there is a need for advanced breeding programs for food and fiber (Hemp) as well.


The present invention is aimed at enhancing cannabinoid breeding capabilities by using advanced molecular genome editing technologies in order to maximize the plants' phyto-chemical molecules production potential.


According to a further aspect of the present invention, a method or a tool is provided that enables the regulation in planta or the production of specific cannabinoid molecules.


It is further within the scope of the present invention to provide means and methods for in planta modification of specific genes that relate to and/or control the cannabinoid biosynthesis pathways (as indicated in FIG. 2). More specifically, but not limited to, the present invention achieves the use of the CRISPR/Cas technology (see FIG. 1), such as, but not limited to Cas9 or Cpf1, in order to generate knockout alleles of the genes depicted in FIG. 2, rendering the enzymes inactive thereby controlling in planta the production of the resulting cannabinoid products depicted in FIG. 2.


According to some embodiments of the present invention, the above in planta modification can be based on alternative gene silencing technologies such as Zinc Finger Nucleases (ZFN's), Transcription activator-like effector nucleases (TALEN's), RNA silencing, amiRNA or any other gene silencing technique known in the art.


According to some other embodiments of the present invention, DNA introduction into the plant cells can be done by Agrobacterium infiltration, viral based plasmids for virus induced gene silencing (VIGS) and by mechanical insertion of DNA (PEG, gene gun etc).


According to further aspects of the present invention, it is possible to directly insert the Cas9 protein together with a gRNA in order to bypass the need for in vivo transcription and translation of the Cas9+gRNA plasmid in planta in order to achieve the same desired outcome.


It is a core aspect of the present invention that the above CRISPR/Cas system allows the modification of specific DNA sequences. This is achieved by combining the Cas nuclease (Cas9, Cpf1 or the like) with a guide RNA molecule (gRNA). The gRNA is designed such that it should be complementary to a specific DNA sequence targeted for editing in the plant genome and which guides the Cas nuclease to a specific nucleotide sequence (see FIG. 1). Gene specific gRNA's are cloned into the same plasmid as the Cas gene and this plasmid is inserted into plant cells. Insertion of this plasmid DNA can be done, but not limited to, by different delivery systems biological and or mechanical.


Without wishing to be bound by theory, according to further specific aspects of the present invention, upon reaching the specific DNA sequence, the Cas9 nuclease cleaves both DNA strands to create double stranded breaks leaving blunt ends. This cleavage site is then repaired by the cellular non homologous end joining DNA repair mechanism resulting in insertions or deletions which eventually creates a mutation around the cleavage site. The deletion form of the mutation consists of at least 1 base pair deletion. As a result of this base pair deletion the gene coding sequence is disrupted and the translation of the encoded protein is compromised either by a premature stop codon or disruption of a functional or structural property of the protein.


It is further within the scope that by introducing a gRNA with homology to a specific site of a gene described in FIG. 2, and sub cloning this gRNA into a plasmid containing the Cas9 gene, and upon insertion of the described plasmid into the plant cells, site specific mutations are generated in the genes herein described (delta-9-tetrahydrocannabinol (THC) content, or reduced cannabidiol (CBD) content, or reduced THC and CBD content, wherein said plant comprises a targeted genome modification effective in decreasing expression of a at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof). Thus effectively creating non-active proteins in the cannabinoid biosynthesis pathway, resulting in inactivation of their enzymatic activity. As a result, the present disclosure enables altering cannabinoid content in the genome edited plant. This alteration of cannabinoid content can result in a plant with significantly reduced synthesis of the molecules depicted in FIG. 2 and/or of one or more cannabinoids produced by these enzymes.


It is herein acknowledged that as the pharma industry is interested in extracting the cannabinoids from the Cannabis plant, individual Cannabis plants or strains or varieties containing modulated levels of such cannabinoids can be developed, tailored to the specific needs of the pharma industry thereby increasing the cost effectiveness and attractiveness of this crop.


The solution proposed by the current invention is using genome editing such as the CRISPR/Cas system in order to create cultivated Cannabis plants with modulated levels or ratios of cannabinoids. More specifically alternation of specific cannabinoids, i.e. THC and CBD is achieved by using genome editing techniques to reduce the expression of enzymes in the cannabinoid biosynthesis pathway.


Breeding using genome editing allows a precise and significantly shorter breeding process in order to achieve these goals with a much higher success rate. Thus genome editing, has the potential to generate improved varieties faster and at a lower cost.


In order to generate a reproducible product, Cannabis growers are currently using vegetative propagation (cloning or tissue culture). However, in conventional agricultural, genetic stability of field crops and vegetables is maintained by using F1 hybrid seeds. These hybrids are generated by crossing homozygous parental lines.


The next step for the Cannabis industry is the adoption and use of hybrid seeds for propagation, which is common practice in the conventional seed industry (from field crops to vegetables). This will allow growing and supplying high quality and reproducible raw material for the pharmaceutical industry.


The current invention discloses the generation of non GMO Cannabis plants with manipulated and controlled cannabinoid content, using the genome editing technology, e.g., the CRISPR/Cas9 highly precise tool. The generated mutations can be introduced into elite or locally adapted Cannabis lines rapidly, with relatively minimal effort and investment.


Genome editing is an efficient and useful tool for increasing crop productivity traits, and there is particular interest in advancing manipulation of genes controlling cannabinoids biosynthesis in Cannabis species, to produce strains which are adapted to specific therapeutic or regulatory needs.


Genome-editing technologies, such as the clustered regularly interspaced short palindromic repeats (CRISPR)-CRISPR-associated protein-9 nuclease (Cas9) (CRISPR-Cas9) provide opportunities to address these deficiencies, with the aims of increasing quality and yield.


A major obstacle for CRISPR-Cas9 plant genome editing is lack of efficient tissue culture and transformation methodologies. The present invention achieves these aims and surprisingly provides transformed and regenerated Cannabis plants with modified desirable cannabinoids content.


To that end, guide RNAs (gRNAs) were designed for each of the target genes herein identified in Cannabis to induce mutations in at least one cannabinoid biosynthesis enzyme including Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof.


The present invention shows that Cannabis plants which contain genome editing events with at least one of the CsAAE1, CsOLS, CsPT genes or any combination thereof, express not more than 0.5% THC (or THCA) and CBD (or THCA) by weight. In specific embodiments, such plants express less than 0.5%, preferably less than 0.4%, less than 0.3%, less than 0.2%, less than 0.1% or 0% THC and CBD by weight (e.g. by dry weight).


It is further within the scope that Cannabis plants which contain genome editing events with at least one of the CsAAE1, CsOLS, CsPT genes or any combination thereof, express not more than 0.5% THC (or THCA) and/or CBD (or THCA) by weight. In specific embodiments, such plants express less than 0.5%, preferably less than 0.4%, less than 0.3%, less than 0.2%, less than 0.1% or 0% THC and/or CBD by weight (e.g. by dry weight).


The present invention further shows that Cannabis plants containing genome editing events within the CsTHCAS gene express higher levels of CBD (or CBDA) compared to non-edited plants. In a further embodiment, the CsTHCAS edited plants contain very low levels of THCA (or THC), preferably not more than 0.5% by weight.


The present invention further shows that plants containing genome editing events within the CsCBDAS gene express higher levels of THC (or THCA) as compared to non-edited plants. In a further embodiment, the CsCBDAS edited plants contain very low levels of CBDA (or CBD), preferably not more than 0.5% by weight.


It is a further aspect of the present invention to provide the Cannabis plant as defined in any of the above, wherein said plant has a THC and/or CBD content of up to 30% by weight, particularly between about %0.1 to about 30% by weight, more particularly between about %0.3 to about 30%, even more particularly between about %0.3 to about 10% by weight.


As used herein the term “about” denotes ±25% of the defined amount or measure or value.


As used herein the term “similar” denotes a correspondence or resemblance range of about ±20%, particularly ±15%, more particularly about ±10% and even more particularly about ±5%.


As used herein the term “corresponding” generally means similar, analogous, like, alike, akin, parallel, identical, resembling or comparable. In further aspects it means having or participating in the same relationship (such as type or species, kind, degree, position, correspondence, or function). It further means related or accompanying. In some embodiments of the present invention it refers to plants of the same Cannabis species or strain or variety or to sibling plant, or one or more individuals having one or both parents in common.


A “plant” as used herein refers to any plant at any stage of development, particularly a seed plant. The term “plant” includes the whole plant or any parts or derivatives thereof, such as plant cells, seeds, plant protoplasts, plant cell tissue culture from which tomato plants can be regenerated, plant callus or calli, meristematic cells, microspores, embryos, immature embryos, pollen, ovules, anthers, fruit, flowers, leaves, cotyledons, pistil, seeds, seed coat, roots, root tips and the like.


The term “plant cell” used herein refers to a structural and physiological unit of a plant, comprising a protoplast and a cell wall. The plant cell may be in a form of an isolated single cell or a cultured cell, or as a part of higher organized unit such as, for example, plant tissue, a plant organ, or a whole plant.


The term “plant cell culture” as used herein means cultures of plant units such as, for example, protoplasts, regenerable cells, cell culture, cells, cells in plant tissues, pollen, pollen tubes, ovules, embryo sacs, zygotes and embryos at various stages of development, leaves, roots, root tips, anthers, meristematic cells, microspores, flowers, cotyledons, pistil, fruit, seeds, seed coat or any combination thereof.


The term “plant material” or “plant part” used herein refers to leaves, stems, roots, root tips, flowers or flower parts, fruits, pollen, egg cells, zygotes, seeds, seed coat, cuttings, cell or tissue cultures, or any other part or product of a plant or a combination thereof.


A “plant organ” as used herein means a distinct and visibly structured and differentiated part of a plant such as a root, stem, leaf, flower, flower bud, or embryo.


The term “Plant tissue” as used herein means a group of plant cells organized into a structural and functional unit. Any tissue of a plant in planta or in culture is included. This term includes, but is not limited to, whole plants, plant organs, plant seeds, tissue culture, protoplasts, meristematic cells, calli and any group of plant cells organized into structural and/or functional units. The use of this term in conjunction with, or in the absence of, any specific type of plant tissue as listed above or otherwise embraced by this definition is not intended to be exclusive of any other type of plant tissue.


As used herein, the term “progeny” or “progenies” refers in a non limiting manner to offspring or descendant plants. According to certain embodiments, the term “progeny” or “progenies” refers to plants developed or grown or produced from the disclosed or deposited seeds as detailed inter alia. The grown plants preferably have the desired traits of the disclosed or deposited seeds, i.e. loss of function mutation in at least one CsSP gene or at least one CsSP5G gene.


The term “Cannabis” refers hereinafter to a genus of flowering plants in the family Cannabaceae. Cannabis is an annual, dioecious, flowering herb that includes, but is not limited to three different species, Cannabis sativa, Cannabis indica and Cannabis ruderalis. The term also refers to hemp. Cannabis plants produce a group of chemicals called cannabinoids. Cannabinoids, terpenoids, and other compounds are secreted by glandular trichomes that occur most abundantly on the floral calyxes and bracts of female Cannabis plants.


The term “nonpsychoactive” refers hereinafter to products or compositions or elements or components of Cannabis not significantly affecting the mind or mental processes.


The term “cannabinoid” refers hereinafter to a class of diverse chemical compounds that act on cannabinoid receptors on cells that repress neurotransmitter release in the brain. These receptor proteins include the endocannabinoids (produced naturally in the body by humans and animals), the phytocannabinoids (found in Cannabis and some other plants), and synthetic cannabinoids.


The main cannabinoids are concentrated in a viscous resin produced in structures known as glandular trichomes. Up until now, at least 113 different cannabinoids have been isolated from the Cannabis plant. The main classes of cannabinoids from Cannabis are THC (tetrahydrocannabinol), THCA (tetrahydrocannabinolic acid), CBD (cannabidiol), CBDA (cannabidiolic acid), CBN (cannabinol), CBG (cannabigerol), CBC (cannabichromene), CBL (cannabicyclol), CBV (cannabivarin), THCV (tetrahydrocannabivarin), CBDV (cannabidivarin), CBCV (cannabichromevarin), CBGV (cannabigerovarin), CBGM (cannabigerol monomethyl ether), CBE (cannabielsoin), CBT (cannabicitran) and any combination thereof.


The best studied cannabinoids include tetrahydrocannabinol (THC), cannabidiol (CBD) and cannabinol (CBN).


Reference is now made to Tetrahydrocannabinol (THC), the primary psychoactive component of the Cannabis plant. Delta-9-tetrahydrocannabinol (Δ9-THC, THC) and delta-8-tetrahydrocannabinol (Δ8-THC), through intracellular CB1 activation, induce anandamide and 2-arachidonoylglycerol synthesis produced naturally in the body and brain. These cannabinoids produce the effects associated with Cannabis by binding to the CB1 cannabinoid receptors in the brain.


Tetrahydrocannabinolic acid (THCA, 2-COOH-THC; conjugate base tetrahydrocannabinolate) is a precursor of tetrahydrocannabinol (THC), the active component of cannabis. THCA is found in variable quantities in fresh, undried cannabis, but is progressively decarboxylated to THC with drying, and especially under intense heating such as when cannabis is smoked or cooked into cannabis edibles. In the context of the present invention, the term THC also refers to THCA and vice versa.


Reference is now made to Cannabidiol (CBD) which is considered as non-psychotropic. Cannabidiol has little affinity for CB1 and CB2 receptors but acts as an indirect antagonist of cannabinoid agonists. It is further acknowledged herein that it is an antagonist at the putative cannabinoid receptor, GPR55, a GPCR expressed in the caudate nucleus and putamen. Cannabidiol has also been shown to act as a 5-HT1A receptor agonist. Cannabis produces CBD-carboxylic acid through the same metabolic pathway as THC, until the next to last step, where CBDA synthase performs catalysis instead of THCA synthase. CBDA is converted into CBD by decarboxylation. In the context of the present invention, the term CBD also refers to CBDA and vice versa.


CBD shares a precursor with THC and is the main cannabinoid in CBD-dominant Cannabis strains.


In the context of the current invention, enzymes within the biosynthetic pathway of THC and CBD, especially AAE, OLS, PT, CBDAS and THCAS (depicted in FIG. 2), are down regulated to control and the content of CBD and/or THC in the Cannabis plant.


Reference is now made to FIG. 2 schematically illustrating the proposed pathway leading to the major cannabinoids Δ 9-tetrahydrocannabinolic acid (THCA) and cannabidiolic acid (CBDA), which decarboxylate to yield Δ 9-tetrahydrocannabinol (THC) and cannabidiol (CBD), respectively. The biosynthesis of THC and CBD in Cannabis follows a similar pathway.


Cannabigerolic acid (CBGA), the precursor to all natural cannabinoids, is cyclized into tetrahydrocannabinolic acid (THCA) and cannabidiolic acid (CBDA) by THCA and CBDA synthase (THCAS and CBDAS in FIG. 2), respectively. The final products of THC and CBD are formed via decarboxylation of these acidic forms. Structurally, there is an important difference between these major cannabinoids. Where THC contains a cyclic ring, CBD contains a hydroxyl group. This seemingly small difference in molecular structure may give the two compounds their different pharmacological properties.


A more specific and detailed description of the biosynthetic pathway of cannabinoids in the Cannabis plant follows below:


The isoprenoid and prenyl precursors for cannabigerolic acid (CBGA), are provided by the hexanoate and 2-C-methyl-D-erythritol 4-phosphate (MEP) pathways, respectively. Geranyl diphosphate (GPP), is a key intermediate metabolite and building block for both cannabinoid and terpenoid biosynthesis. The seven-step mevalonate (MVA) pathway converts pyruvate and glyceraldehyde-3-phosphate (G-3-P) into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Key catalytic enzymes controlling flux through this pathway include the first two steps, 1-deoxy-D-xylulose 5-phosphate synthase (DXS) and 1-deoxy-D-xylulose 5-phosphate reductase (DXR). In the six-step MEP pathway, three units of acetyl coenzyme A (CoA) are converted to IPP, which is isomerized with DMAPP by IPP isomerase. The enzyme catalysing the synthesis of MEV, 3-hydroxy-3-methylglutaryl-CoA reductase (HMGR), is considered to control flux through this pathway. The number of consecutive condensations of the five-carbon monomer isopentenyl diphosphate (IPP) to its isomer, dimethylallyl diphosphate (DMAPP) is indicated by 1x, 2x, 3x. Longer-chain isoprenoids, GPP, farnesyl diphosphate (FPP) and geranyl geranyl diphosphate (GGPP), are the products of IPP and DMAPP condensation catalysed by GPP synthase, FPP synthase and GGPP synthase, respectively. GPP, FPP and geranyl-geranyl diphosphate (GGPP) are the precursors for mono-, sequi-, and di-terpines, respectively. The final steps catalysing the synthesis of major active cannabinoids, cannabichromenic acid (CBCA), cannabidiolic acid (CBDA) and Δ9-tetrahydrocannabinolic acid (THCA), are oxidocyclases, CBCA synthase (CBCAS), CBDA synthase (CBDAS) and THCA synthase (THCAS).


In the current invention, AAE, refers to acyl-activating enzyme; CBD: cannabidiol; CYP76F39, α/β-santalene monooxygenase; GPP synthase small subunit; OLS, olivetol synthase; P450: haemoprotein cytochrome P450; PT, prenyltransferase; STS, santalene synthase; TS, gamma-terpinene synthase; and TXS, taxadiene synthase.


As used herein the term “genetic modification” or “genome modification” refers hereinafter to genetic manipulation or modulation, which is the direct manipulation of an organism's genes using biotechnology. It also refers to a set of technologies used to change the genetic makeup of cells, including the transfer of genes within and across species, targeted mutagenesis and genome editing technologies to produce improved organisms. According to main embodiments of the present invention, modified Cannabis plants with altered cannabinoid content traits are generated using genome editing mechanism. This technique enables to achieve in planta modification of specific genes that control the biosynthesis of main cannabinoids, namely, THC and/or CBD in the Cannabis plant.


The term “genome editing”, or “genome/genetic modification” or “genome engineering” generally refers hereinafter to a type of genetic engineering in which DNA is inserted, deleted, modified or replaced in the genome of a living organism. Unlike previous genetic engineering techniques that randomly insert genetic material into a host genome, genome editing targets the insertions to site specific locations.


It is within the scope of the present invention that the common methods for such editing use engineered nucleases, or “molecular scissors”. These nucleases create site-specific double-strand breaks (DSBs) at desired locations in the genome. The induced double-strand breaks are repaired through nonhomologous end-joining (NHEJ) or homologous recombination (HR), resulting in targeted mutations (‘edits’). Families of engineered nucleases used by the current invention include, but are not limited to: meganucleases, zinc finger nucleases (ZFNs), transcription activator-like effector-based nucleases (TALEN), and the clustered regularly interspaced short palindromic repeats (CRISPR/Cas9) system.


Reference is now made to exemplary genome editing terms used by the current disclosure:


Genome Editing Glossary

Cas=CRISPR-associated genes


Cas9, Csn1=a CRISPR-associated protein containing two nuclcease domains, that is programmed by small RNAs to cleave DNA


crRNA=CRISPR RNA


dCAS9=nuclease-deficient Cas9


DSB=Double-Stranded Break


gRNA=guide RNA


HDR=Homology-Directed Repair


HNH=an endonuclease domain named for characteristic histidine and asparagine residues


Indel=insertion and/or deletion


NHEJ=Non-Homologous End Joining


PAM=Protospacer-Adjacent Motif


RuvC=an endonuclease domain named for an E. coli protein involved to DNA repair


sgRNA=single guide RNA


tracrRNA, trRNA=trans-activating crRNA


TALEN=Transcription-Activator Like Effector Nuclease


ZFN=Zinc-Finger Nuclease


According to specific aspects of the present invention, the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and CRISPR-associated (Cas) genes are used for the first time for generating genome modification in targeted genes in the Cannabis plant. It is herein acknowledged that the functions of CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and CRISPR-associated (Cas) genes are essential in adaptive immunity in select bacteria and archaea, enabling the organisms to respond to and eliminate invading genetic material. These repeats were initially discovered in the 1980s in E. coli. Without wishing to be bound by theory, reference is now made to a type of CRISPR mechanism, in which invading DNA from viruses or plasmids is cut into small fragments and incorporated into a CRISPR locus comprising a series of short repeats (around 20 bps). The loci are transcribed, and transcripts are then processed to generate small RNAs (crRNA, namely CRISPR RNA), which are used to guide effector endonucleases that target invading DNA based on sequence complementarity.


According to further aspects of the invention, Cas protein, such as Cas9 (also known as Csn1) is required for gene silencing. Cas9 participates in the processing of crRNAs, and is responsible for the destruction of the target DNA. Cas9's function in both of these steps relies on the presence of two nuclease domains, a RuvC-like nuclease domain located at the amino terminus and a HNH-like nuclease domain that resides in the mid-region of the protein. To achieve site-specific DNA recognition and cleavage, Cas9 is complexed with both a crRNA and a separate trans-activating crRNA (tracrRNA or trRNA), that is partially complementary to the crRNA. The tracrRNA is required for crRNA maturation from a primary transcript encoding multiple pre-crRNAs. This occurs in the presence of RNase III and Cas9.


Without wishing to be bound by theory, it is herein acknowledged that during the destruction of target DNA, the HNH and RuvC-like nuclease domains cut both DNA strands, generating double-stranded breaks (DSBs) at sites defined by a 20-nucleotide target sequence within an associated crRNA transcript. The HNH domain cleaves the complementary strand, while the RuvC domain cleaves the noncomplementary strand.


It is further noted that the double-stranded endonuclease activity of Cas9 also requires that a short conserved sequence, (2-5 nts) known as protospacer-associated motif (PAM), follows immediately 3′- of the crRNA complementary sequence.


According to further aspects of the invention, a two-component system may be used by the current invention, combining trRNA and crRNA into a single synthetic single guide RNA (sgRNA) for guiding targeted gene alterations.


It is further within the scope that Cas9 nuclease variants include wild-type Cas9, Cas9D10A and nuclease-deficient Cas9 (dCas9).


Reference is now made to FIG. 1 schematically presenting an example of CRISPR/Cas9 mechanism of action as depicted by Xie, Kabin, and Yinong Yang. “RNA guided genome editing in plants using a CRISPR-Cas system.” Molecular plant 6.6 (2013): 1975-1983. As shown in this figure, the Cas9 endonuclease forms a complex with a chimeric RNA (called guide RNA or gRNA), replacing the crRNA-transcrRNA heteroduplex, and the gRNA could be programmed to target specific sites. The gRNA-Cas9 should comprise at least 15-base-pairing (gRNA seed region) without mismatch between the 5′-end of engineered gRNA and targeted genomic site, and an NGG motif (called protospacer-adjacent motif or PAM) that follows the base-pairing region in the complementary strand of the targeted DNA.


The term “meganucleases” as used herein refers hereinafter to endodeoxyribonucleases characterized by a large recognition site (double-stranded DNA sequences of 12 to 40 base pairs); as a result this site generally occurs only once in any given genome. Meganucleases are therefore considered to be the most specific naturally occurring restriction enzymes.


The term “protospacer adjacent motif” or “PAM” as used herein refers hereinafter to a 2-6 base pair DNA sequence immediately following the DNA sequence targeted by the Cas9 nuclease in the CRISPR bacterial adaptive immune system. PAM is a component of the invading virus or plasmid, but is not a component of the bacterial CRISPR locus. PAM is an essential targeting component which distinguishes bacterial self from non-self DNA, thereby preventing the CRISPR locus from being targeted and destroyed by nuclease.


The term “Next-generation sequencing” or “NGS” as used herein refers hereinafter to massively, parallel, high-throughput or deep sequencing technology platforms that perform sequencing of millions of small fragments of DNA in parallel. Bioinformatics analyses are used to piece together these fragments by mapping the individual reads to the reference genome.


The term “gene knockdown” as used herein refers hereinafter to an experimental technique by which the expression of one or more of an organism's genes is reduced. The reduction can occur through genetic modification, i.e. targeted genome editing or by treatment with a reagent such as a short DNA or RNA oligonucleotide that has a sequence complementary to either gene or an mRNA transcript. The reduced expression can be at the level of RNA or at the level of protein. It is within the scope of the present invention that the term gene knockdown also refers to a loss of function mutation and/or gene knockout mutation in which an organism's genes is made inoperative or nonfunctional.


The term “gene silencing” as used herein refers hereinafter to the regulation of gene expression in a cell to prevent the expression of a certain gene. Gene silencing can occur during either transcription or translation. In certain aspects of the invention, gene silencing is considered to have a similar meaning as gene knockdown. When genes are silenced, their expression is reduced. In contrast, when genes are knocked out, they are completely not expressed. Gene silencing may be considered a gene knockdown mechanism since the methods used to silence genes, such as RNAi, CRISPR, or siRNA, generally reduce the expression of a gene by at least 70% but do not completely eliminate it.


The term “loss of function mutation” as used herein refers to a type of mutation in which the altered gene product lacks the function of the wild-type gene. A synonyms of the term included within the scope of the present invention is null mutation.


The term “microRNAs” or “miRNAs” refers hereinafter to small non-coding RNAs that have been found in most of the eukaryotic organisms. They are involved in the regulation of gene expression at the post-transcriptional level in a sequence specific manner. MiRNAs are produced from their precursors by Dicer-dependent small RNA biogenesis pathway. MiRNAs are candidates for studying gene function using different RNA-based gene silencing techniques. For example, artificial miRNAs (amiRNAs) targeting one or several genes of interest is a potential tool in functional genomics.


The term “in planta” means in the context of the present invention within the plant or plant cells. More specifically, it means introducing CRISPR/Cas complex into plant material comprising a tissue culture of several cells, a whole plant, or into a single plant cell, without introducing a foreign gene or a mutated gene. It also used to describe conditions present in a non-laboratory environment (e.g. in vivo).


The term “genotype” or “genetic background” refers hereinafter to the genetic constitution of a cell or organism. An individual's genotype includes the specific alleles, for one or more genetic marker loci, present in the individual's haplotype. As is known in the art, a genotype can relate to a single locus or to multiple loci, whether the loci are related or unrelated and/or are linked or unlinked. In some embodiments, an individual's genotype relates to one or more genes that are related in that the one or more of the genes are involved in the expression of a phenotype of interest. Thus, in some embodiments a genotype comprises a summary of one or more alleles present within an individual at one or more genetic loci. In some embodiments, a genotype is expressed in terms of a haplotype. It further refers to any inbreeding group, including taxonomic subgroups such as subspecies, taxonomically subordinate to species and superordinate to a race or subrace and marked by a pre-determined profile of latent factors of hereditary traits.


The term “orthologue” as used herein refers hereinafter to one of two or more homologous gene sequences found in different species.


The term “functional variant” or “functional variant of a nucleic acid or amino acid sequence” as used herein, for example with reference to SEQ ID NOs: 1, 4 or 7 refers to a variant of a sequence or part of a sequence which retains the biological function of the full non-variant allele and hence has the activity of the expressed gene or protein. A functional variant also comprises a variant of the gene of interest encoding a polypeptide which has sequence alterations that do not affect function of the resulting protein, for example, in non-conserved residues. Also encompassed is a variant that is substantially identical, i.e. has only some sequence variations, for example, in non-conserved residues, to the wild type nucleic acid or amino acid sequences of the alleles as shown herein, and is biologically active.


The term “variety” or “cultivar” used herein means a group of similar plants that by structural features and performance can be identified from other varieties within the same species.


The term “allele” used herein means any of one or more alternative or variant forms of a gene or a genetic unit at a particular locus, all of which alleles relate to one trait or characteristic at a specific locus. In a diploid cell of an organism, alleles of a given gene are located at a specific location, or locus (loci plural) on a chromosome. Alternative or variant forms of alleles may be the result of single nucleotide polymorphisms, insertions, inversions, translocations or deletions, or the consequence of gene regulation caused by, for example, by chemical or structural modification, transcription regulation or post-translational modification/regulation. An allele associated with a qualitative trait may comprise alternative or variant forms of various genetic units including those mat are identical or associated with a single gene or multiple genes or their products or even a gene disrupting or controlled by a genetic factor contributing to the phenotype represented by the locus. According to further embodiments, the term “allele” designates any of one or more alternative forms of a gene at a particular locus. Heterozygous alleles are two different alleles at the same locus. Homozygous alleles are two identical alleles at a particular locus. A wild type allele is a naturally occurring allele.


As used herein, the term “locus” (loci plural) means a specific place or places or region or a site on a chromosome where for example a gene or genetic marker element or factor is found. In specific embodiments, such a genetic element is contributing to a trait.


As used herein, the term “homozygous” refers to a genetic condition or configuration existing when two identical or like alleles reside at a specific locus, but are positioned individually on corresponding pairs of homologous chromosomes in the cell of a diploid organism.


Conversely, as used herein, the term “heterozygous” means a genetic condition or configuration existing when two different or unlike alleles reside at a specific locus, but are positioned individually on corresponding pairs of homologous chromosomes in the cell of a diploid organism.


As used herein, the phrase “genetic marker” or “molecular marker” or “biomarker” refers to a feature in an individual's genome e.g., a nucleotide or a polynucleotide sequence that is associated with one or more loci or trait of interest In some embodiments, a genetic marker is polymorphic in a population of interest, or the locus occupied by the polymorphism, depending on context. Genetic markers or molecular markers include, for example, single nucleotide polymorphisms (SNPs), indels (i.e. insertions deletions), simple sequence repeats (SSRs), restriction fragment length polymorphisms (RFLPs), random amplified polymorphic DNAs (RAFDs), cleaved amplified polymorphic sequence (CAPS) markers, Diversity Arrays Technology (DArT) markers, and amplified fragment length polymorphisms (AFLPs) or combinations thereof, among many other examples such as the DNA sequence per se. Genetic markers can, for example, be used to locate genetic loci containing alleles on a chromosome that contribute to variability of phenotypic traits. The phrase “genetic marker” or “molecular marker” or “biomarker” can also refer to a polynucleotide sequence complementary or corresponding to a genomic sequence, such as a sequence of a nucleic acid used as a probe or primer.


As used herein, the term “germplasm” refers to the totality of the genotypes of a population or other group of individuals (e.g., a species). The term “germplasm” can also refer to plant material; e.g., a group of plants that act as a repository for various alleles. Such germplasm genotypes or populations include plant materials of proven genetic superiority; e.g., for a given environment or geographical area, and plant materials of unknown or unproven genetic value; that are not part of an established breeding population and that do not have a known relationship to a member of the established breeding population.


The terms “hybrid”, “hybrid plant” and “hybrid progeny” used herein refers to an individual produced from genetically different parents (e.g., a genetically heterozygous or mostly heterozygous individual).


As used herein, “sequence identity” or “identity” in the context of two nucleic acid or polypeptide sequences makes reference to the residues in the two sequences that are the same when aligned for maximum correspondence over a specified comparison window. When percentage of sequence identity is used in reference to proteins, it is recognized that residue positions which are not identical often differ by conservative amino acid substitutions, where amino acid residues are substituted for other amino acid residues with similar chemical properties (e.g., charge or hydrophobicity) and therefore do not change the functional properties of the molecule. The term further refers hereinafter to the amount of characters which match exactly between two different sequences. Hereby, gaps are not counted and the measurement is relational to the shorter of the two sequences.


It is further within the scope that the terms “similarity” and “identity” additionally refer to local homology, identifying domains that are homologous or similar (in nucleotide and/or amino acid sequence). It is acknowledged that bioinformatics tools such as BLAST, SSEARCH, FASTA, and HMMER calculate local sequence alignments which identify the most similar region between two sequences. For domains that are found in different sequence contexts in different proteins, the alignment should be limited to the homologous domain, since the domain homology is providing the sequence similarity captured in the score. According to some aspects the term similarity or identity further includes a sequence motif, which is a nucleotide or amino-acid sequence pattern that is widespread and has, or is conjectured to have, a biological significance.


Proteins may have a sequence motif and/or a structural motif, a motif formed by the three-dimensional arrangement of amino acids which may not be adjacent.


As used herein, the terms “nucleic acid”, “nucleic acid sequence”, “nucleotide”, “nucleic acid molecule” or “polynucleotide” are intended to include DNA molecules (e.g., cDNA or genomic DNA), RNA molecules (e.g., mRNA), natural occurring, mutated, synthetic DNA or RNA molecules, and analogs of the DNA or RNA generated using nucleotide analogs. It can be single-stranded or double-stranded. Such nucleic acids or polynucleotides include, but are not limited to, coding sequences of structural genes, anti-sense sequences, and non-coding regulatory sequences that do not encode mRNAs or protein products. These terms also encompass a gene. The term “gene”, “allele” or “gene sequence” is used broadly to refer to a DNA nucleic acid associated with a biological function. Thus, genes may include introns and exons as in the genomic sequence, or may comprise only a coding sequence as in cDNAs, and/or may include cDNAs in combination with regulatory sequences. Thus, according to the various aspects of the invention, genomic DNA, cDNA or coding DNA may be used. In one embodiment, the nucleic acid is cDNA or coding DNA.


The terms “peptide”, “polypeptide” and “protein” are used interchangeably herein and refer to amino acids in a polymeric form of any length, linked together by peptide bonds.


According to other aspects of the invention, a “modified” or a “mutant” plant is a plant that has been altered compared to the naturally occurring wild type (WT) plant. Specifically, the endogenous nucleic acid sequences of one or more of the Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1), and any combination thereof, homologs in Cannabis have been altered compared to wild type sequences using mutagenesis and/or genome editing methods as described herein. This causes inactivation of at least one of these endogenous genes and thus disables their function in production of THC and/or CBD, depending on the gene or combination of genes down regulated.


Such plants have an altered cannabinoid profile which may be suitable for treatment of different medical conditions or diseases. Therefore, the cannabinoid profile is affected by the presence of at least one mutated endogenous cannabinoid biosynthesis enzyme gene in the Cannabis plant genome which has been specifically targeted using genome editing technique.


As used herein, the term “cannabinoid biosynthesis enzyme” refers to a protein acting as a catalyst for producing one or more cannabinoids in a plant of genus Cannabis.


Examples of cannabinoid biosynthesis enzymes within the context of this disclosure include, but are not limited to: tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), aromatic prenyltransferase (PT), olivetol synthase (OLS), acyl-activating enzyme 1 (AAE1), polyketide synthase (PKS), olivetolic acid cyclase (OAC), tetraketide synthase (TKS), type III PKS, chalcone synthase (CHS), prenyltransferase, CBCA synthase, GPP synthase, FPP synthase, Limonene synthase, aromatic prenyltransferase, and geranylphosphate: olivetolate geranyltrasferase.


Disclosed herein, is a method of controlling cannabinoid synthesis in a plant of genus Cannabis. In some embodiments, the method comprising: Manipulating expression of a gene coding for a cannabinoid biosynthesis enzyme selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof.


As used herein, the term “controlling” refers to directing, governing, steering, and/or manipulating, specifically reducing, decreasing or down regulating or silencing the amount of a cannabinoid or cannabinoids produced in a plant of genus Cannabis. In one embodiment, controlling comprises modifying a plant of genus Cannabis to produce an unnaturally occurring concentration of a first cannabinoid. In one embodiment, controlling comprises modifying a plant of genus Cannabis to produce an unnaturally occurring ratio of a first cannabinoid. In one embodiment, controlling comprises modifying a plant of genus Cannabis to produce an unnaturally occurring concentration of a second cannabinoid. In one embodiment, controlling comprises modifying a plant of genus Cannabis to produce an unnaturally occurring ratio of a second cannabinoid.


As used herein, the term “expression of a gene” refers to a plant's ability to utilize information from genetic material for producing functional gene products. Within the context of this disclosure, expression is meant to encompass the plant's ability to produce proteins, such as enzymes, and various other molecules from the plant's genetic material. In one embodiment, the plant expresses mutated or modified cannabinoid biosynthesis enzymes for cannabinoid biosynthesis. In one embodiment it refers to transcription (RNA) or translation (protein) levels of gene expression.


As used herein, the term “manipulating expression of a gene” refers to intentionally changing the genome of a plant of genus Cannabis to control the expression of certain features.


In one embodiment, the plant's genome is manipulated to express less CBDA synthase.


In one embodiment, the plant's genome is manipulated to express less THCA synthase.


In one embodiment, the plant's genome is manipulated to express less aromatic prenyltransferase (PT).


In one embodiment, the plant's genome is manipulated to express less olivetol synthase (OLS).


In one embodiment, the plant's genome is manipulated to express less acyl-activating enzyme 1 (AAE1).


According to a further embodiment, the plant's genome is manipulated to express less of any combination of the above mentioned cannabinoid biosynthesis enzymes.


As used herein, the term “coding” refers to storing genetic information and accessing the genetic information for producing functional gene products.


According to further aspects of the present invention, the altered THC and/or CBD content trait is not conferred by the presence of transgenes expressed in Cannabis.



Cannabis plants of the invention are modified plants compared to wild type plants which comprise and express at least one mutant Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof allele.


Main aspects of the invention involve targeted mutagenesis methods, specifically genome editing, and exclude embodiments that are solely based on generating plants by traditional breeding methods.


Described are polynucleotides as well as methods for modifying metabolite biosynthesis pathways in Cannabis plants and/or Cannabis plant cells, Cannabis plants and/or plant cells exhibiting modified metabolite biosynthesis pathways. In particular, described are methods for modifying production of THC and/or CBD in Cannabis plants by modulating the expression and/or activity of at least one of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof and Cannabis plants having modified expression and/or activity of at least one of these genes/proteins.


Accordingly, in certain embodiments, the present invention provides methods of downregulating production of THC and/or CBD. In particular embodiments, there is provided methods of downregulating expression and/or activity THCA synthase and/or CBDA synthase.


Also provided are plants and/or plant cells having modified production of THC and/or CBD. In certain embodiments, there are provided Cannabis plants and/or cells having down-regulated expression of and/or activity of at least one of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof.


Down regulation of key steps in metabolic pathway re-directs intermediates and energy to alternative metabolic pathways and results in increased production and accumulation or reduced production and elimination of other end products. THC and other Cannabis metabolites share a biosynthetic pathway; that cannabigerolic acid is a precursor of THC, CBD and Cannabichromene. In particular, THCA synthase catalyzes the production of delta-9-tetrahydrocannabinolic acid from cannabigerolic acid; delta-9-tetrahydrocannabinolic undergoes thermal conversion to form THC. CBDA synthase catalyzes the production of cannabidiolic acid from cannabigerolic acid; cannabidiolic acid undergoes thermal conversion to CBD. CBCA synthase catalyzes the production of cannabichromenic acid from cannabigerolic acid; cannabichromenic acid undergoes thermal conversion to cannabichromene.


A reduction in the production of THC, CBD, or Cannabichromene will enhance production of the remaining metabolites in this shared pathway. For example, production of CBD and/or Cannabichromene is enhanced by inhibiting production of THC. THC production may be inhibited by inhibiting expression and/or activity of tetrahydrocannabinolic acid (THCA) synthase enzyme.


Described are certain embodiments of enhancing production of one or more secondary metabolites by downregulation of the production of one or more metabolites having a shared biosynthetic pathway. Certain embodiments provide methods of enhancing production of one or more secondary metabolites that share steps and intermediates in the THC and/or CBD biosynthetic pathway by downregulation of THC and/or CBD production. In specific embodiments, there are provided methods of enhancing production of CBD and/or Cannabichromene by inhibiting production of THC. In other specific embodiments, there are provided methods of enhancing production of THC by inhibiting production of CBD.


In other specific embodiments, both the production of CBD and THC is inhibited by targeting at least one of the herein identified genes CsAAE1 (SEQ ID NO:13), or CsOLS (SEQ ID NO:10), or CsPT (SEQ ID NO:7) or any combination thereof.


In other specific embodiments, the production of CBD is inhibited (and THC is induced or not affected) by targeting the herein identified gene CsCBDAS (SEQ ID NO:4).


In other specific embodiments, the production of THC is inhibited (and CBD is induced or not affected) by targeting the herein identified gene CsTHCAS (SEQ ID NO:1).


Certain embodiments provide methods of enhancing production of one or more secondary metabolites which share steps and intermediates in the THC biosynthetic pathway by downregulation of expression and/or activity of CsTHCA synthase (SEQ ID NO:1).


In specific embodiments, there are provided methods of enhancing production of CBD and/or Cannabichromene by downregulation of expression and/or activity of THCA synthase.


Also provided are plants and plant cells having modified production of one or more metabolites having a shared biosynthetic pathway. In certain embodiments, there are provided Cannabis plants and cells enhanced production of one or more secondary metabolites and downregulation of one or more other metabolites having a shared biosynthetic pathway. In certain embodiments, there are provided Cannabis plants and cells having enhanced production of one or more secondary metabolites and downregulation of one or more other metabolites in the THC and or CBD biosynthetic pathway. In certain embodiments, there are provided Cannabis plants and cells having enhanced production of one or more secondary metabolites in the THC biosynthetic pathway and downregulated THC production. In specific embodiments, there are provided Cannabis plants and cells having enhanced production of CBD and/or Cannabichromene and downregulated THC production.


In specific embodiments, there are provided Cannabis plants and/or cells having enhanced production of CBD and/or Cannabichromene and downregulated expression and/or activity of THCA synthase.


The loss of function mutation may be a deletion or insertion (“indels”) with reference the wild type allele sequence. The deletion may comprise 1-20 or more nucleotides, for example 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 1, 12, 13, 14, 15, 16, 17, 18 or 20 nucleotides or more in one or more strand. The insertion may comprise 1-20 or more nucleotides, for example 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 1, 12, 13, 14, 15, 16, 17, 18 or 20 or more nucleotides in one or more strand.


The plant of the invention includes plants wherein the plant is heterozygous for the each of the mutations. In other embodiment however, the plant is homozygous for the mutations. Progeny that is also homozygous can be generated from these plants according to methods known in the art.


It is further within the scope that variants of a particular nucleotide or amino acid sequence according to the various aspects of the invention will have at least about 50%-99%, for example at least 75%, for example at least 85%, 86%, 87%, 88%, 89%, 90%, 92%, 94%, 95%, 96%, 97%, 98% or 99% or more sequence identity to that particular non-variant nucleotide sequence of the Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) allele as shown in SEQ ID NO 1, 4, 7, 10 or 13; and/or SEQ ID NO 2, 5, 8, 11 or 14, respectively. Sequence alignment programs to determine sequence identity are well known in the art.


Also, the various aspects of the invention encompass not only a Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) nucleic acid sequence or amino acid sequence, but also fragments thereof. By “fragment” is intended a portion of the nucleotide sequence or a portion of the amino acid sequence and hence of the protein encoded thereby. Fragments of a nucleotide sequence may encode protein fragments that retain the biological activity of the native protein, in this case cannabinoid biosynthesis enzymes.


According to further embodiments of the present invention, DNA introduction into the plant cells can be done by Agrobacterium infiltration, virus based plasmids for delivery of the genome editing molecules and mechanical insertion of DNA (PEG mediated DNA transformation, biolistics, etc.).


In addition, it is within the scope of the present invention that the Cas9 protein is directly inserted together with a gRNA (ribonucleoprotein-RNP's) in order to bypass the need for in vivo transcription and translation of the Cas9+gRNA plasmid in planta to achieve gene editing.


It is within the scope of the present invention that the usage of CRISPR/Cas system for the generation of Cannabis plants with at least one improved domestication trait, allows the modification of predetermined specific DNA sequences without introducing foreign DNA into the genome by GMO techniques. According to one embodiment of the present invention, this is achieved by combining the Cas nuclease (e.g. Cas9, Cpf1 and the like) with a predefined guide RNA molecule (gRNA). The gRNA is complementary to a specific DNA sequence targeted for editing in the plant genome and which guides the Cas nuclease to a specific nucleotide sequence (for example see FIG. 1). The predefined gene specific gRNA's are cloned into the same plasmid as the Cas gene and this plasmid is inserted into plant cells. Insertion of the aforementioned plasmid DNA can be done, but not limited to, using different delivery systems, biological and/or mechanical, e.g. Agrobacterium infiltration, virus based plasmids for delivery of the genome editing molecules and mechanical insertion of DNA (PEG mediated DNA transformation, biolistics, etc.).


It is further within the scope of the present invention that upon reaching the specific predetermined DNA sequence, the Cas9 nuclease cleaves both DNA strands to create double stranded breaks leaving blunt ends. This cleavage site is then repaired by the cellular non homologous end joining DNA repair mechanism resulting in insertions or deletions which eventually create a mutation at the cleavage site. For example, it is acknowledged that a deletion form of the mutation consists of at least 1 base pair deletion. As a result of this base pair deletion the gene coding sequence is disrupted and the translation of the encoded protein is compromised either by a premature stop codon or disruption of a functional or structural property of the protein. Thus DNA is cut by the Cas9 protein and re-assembled by the cell's DNA repair mechanism.


It is further within the scope that manipulation of cannabinoid biosynthesis enzymes in Cannabis plants is herein achieved by generating gRNA with homology to a specific site of predetermined genes in the Cannabis genome i.e. Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) genes, sub cloning this gRNA into a plasmid containing the Cas9 gene, and insertion of the plasmid into the Cannabis plant cells. In this way site specific mutations in the aforementioned genes are generated thus effectively creating non-active molecules, resulting in loss of function of at least one of the enzymes, reduced content of THC, CBD or both of the cannabinoids in the genome edited plant.


In order to understand the invention and to see how it may be implemented in practice, a plurality of preferred embodiments will now be described, by way of non-limiting example only, with reference to the following examples.


Example 1
Production of Cannabis Plants with Modulated Cannabinoid Expression

Production of Cannabis lines with mutated Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS) or Cannabis cannabidiolic acid synthase (CsCBDAS) or Cannabis aromatic prenyltransferase (CsPT) or Cannabis olivetol synthase (CsOLS) or Cannabis acyl-activating enzyme 1 (CsAAE1) gene or any combination thereof may be achieved by at least one of the following breeding/cultivation schemes:


Scheme 1:

    • line stabilization by self pollination
    • Generation of F6 parental lines
    • Genome editing of parental lines
    • Crossing edited parental lines to generate an F1 hybrid plant


Scheme 2:

    • Identifying genes/alleles of interest
    • Designing gRNA
    • Transformation of plants with Cas9+gRNA constructs
    • Screening and identifying editing events
    • Genome editing of parental lines


It is noted that line stabilization may be performed by the following:

    • Induction of male flowering on female (XX) plants
    • Self pollination


According to some embodiments of the present invention, line stabilization requires about 6 self-crossing (6 generations) and done through a single seed descent (SSD) approach.


F1 hybrid seed production: Novel hybrids are produced by crosses between different Cannabis strains.


According to a further aspect of the current invention, shortening line stabilization is performed by Doubled Haploids (DH). More specifically, the CRISPR-Cas9 system is transformed into microspores to achieve DH homozygous parental lines. A doubled haploid (DH) is a genotype formed when haploid cells undergo chromosome doubling. Artificial production of doubled haploids is important in plant breeding. It is herein acknowledged that conventional inbreeding procedures take about six generations to achieve approximately complete homozygosity, whereas doubled haploidy achieves it in one generation.


It is within the scope of the current invention that genetic markers specific for Cannabis are developed and provided by the current invention:

    • Sex markers—molecular markers are used for identification and selection of female vs male plants in the herein disclosed breeding program
    • Genotyping markers—germplasm used in the current invention is genotyped using molecular markers, in order to allow a more efficient breeding process and identification of the Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS) or Cannabis acyl-activating enzyme 1 (CsAAE1) editing event.


It is further within the scope of the current invention that allele and genetic variation is analysed for the Cannabis strains used.


Reference is now made to optional stages that have been used for the production of mutated Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) Cannabis plants by genome editing:


Stage 1: Identifying Cannabis sativa (C. sativa), C. indica and C. ruderalis tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), aromatic prenyltransferase (PT), olivetol synthase (OLS), acyl-activating enzyme 1 (AAE1) orthologues/homologs.


The following homologs have herein been identified in Cannabis sativa (C. sativa), C. indica and C. ruderalis, namely Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS) and Cannabis acyl-activating enzyme 1 (CsAAE1). These homologous genes have been sequenced and mapped.


CsTHCAS has been mapped to CM011610.1:22243181-22246809 and has a genomic sequence as set forth in SEQ ID NO:1. The CsTHCAS gene has a coding sequence as set forth in SEQ ID NO:2 and it encodes an amino acid sequence as set forth in SEQ ID NO:3.


CsCBDAS has been mapped to CM011610.1:21836038-21839672 and has a genomic sequence as set forth in SEQ ID NO:4. The CsCBDAS gene has a coding sequence as set forth in SEQ ID NO:5 and it encodes an amino acid sequence as set forth in SEQ ID NO:6.


CsPT has been mapped to CM011614.1:1184501-1186728 and has a genomic sequence as set forth in SEQ ID NO:7. The CsPT gene has a coding sequence as set forth in SEQ ID NO:8 and it encodes an amino acid sequence as set forth in SEQ ID NO:9.


CsOLS has been mapped to CM011613.1:2335391-2338392 and has a genomic sequence as set forth in SEQ ID NO:10. The CsOLS gene has a coding sequence as set forth in SEQ ID NO:11 and it encodes an amino acid sequence as set forth in SEQ ID NO:12.


CsAAE1 has been mapped to CM011611.1:1210973-1228229 and has a genomic sequence as set forth in SEQ ID NO:13. The CsAAElgene has a coding sequence as set forth in SEQ ID NO:14 and it encodes an amino acid sequence as set forth in SEQ ID NO:15.


Stage 2: Designing and synthesizing gRNA molecules corresponding to the sequence targeted for editing, i.e. sequences of each of the genes Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1). It is noted that the editing event is preferably targeted to a unique restriction site sequence to allow easier screening for plants carrying an editing event within their genome.


According to some aspects of the invention, the nucleotide sequence of the gRNAs should be completely compatible with the genomic sequence of the target gene. Therefore, for example, suitable gRNA molecules should be constructed for different Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) homologues of different Cannabis strains.


Reference is now made to Tables 1-5 presenting gRNA molecules targeted for silencing Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1), respectively. The term ‘PAM’ refers hereinafter to Protospacer Adjacent Motif, which is a 2-6 base pair DNA sequence immediately following the DNA sequence targeted by the Cas9 nuclease in the CRISPR bacterial adaptive immune system.









TABLE 1







gRNA sequences targeted for CsTHCAS













Position








on SEQ.



Specificity
Efficiency
SEQ.


ID. NO.: 1
Strand
Sequence
PAM
Score
Score
ID NO





 919
-1
TATAACTTTATATTGGAGCG
GGG
91.68505
59.10928
 16





 920
-1
CTATAACTTTATATTGGAGC
GGG
81.97792
39.46084
 17





 921
-1
TCTATAACTTTATATTGGAG
CGG
59.73169
58.95429
 18





 926
-1
TCCTTTCTATAACTTTATAT
TGG
56.2663
28.95317
 19





 936
 1
TCCAATATAAAGTTATAGAA
AGG
52.27911
43.64749
 20





1013
 1
ACTACTCAACATTCTCCTTT
AGG
78.87146
29.78268
 21





1017
-1
AATTTTGTAAACAAACCTAA
AGG
47.82242
50.8107
 22





1085
-1
CAATTTAGGAAATTTTCTTG
AGG
53.52986
57.27972
 23





1099
-1
TATATTGGGAGAAGCAATTT
AGG
72.42583
23.48898
 24





1113
-1
TGGATTGTTATGAATATATT
GGG
39.7547
29.09505
 25





1114
-1
CTGGATTGTTATGAATATAT
TGG
62.7209
37.8461
 26





1133
-1
TATACGAGTTTTAGATTTGC
TGG
72.07547
31.53966
 27





1168
-1
TCAGGACAGACATATACAAT
TGG
85.35755
47.27478
 28





1186
-1
GATTTTGTATTGTCAAATTC
AGG
60.33738
31.33693
 29





1218
-1
TGGTTTTGGGGTTGTATCAG
AGG
87.42544
54.0448
 30





1230
-1
GACAATAACGAGTGGTTTTG
GGG
52.23624
53.9614
 31





1231
-1
TGACAATAACGAGTGGTTTT
GGG
75.404
22.91377
 32





1232
-1
GTGACAATAACGAGTGGTTT
TGG
84.75157
30.78067
 33





1238
-1
GAAGGAGTGACAATAACGAG
TGG
81.66494
66.45396
 34





1256
-1
TGGATATGGGAGACATTTGA
AGG
79.3898
47.59851
 35





1269
-1
TAGAATAGTGGCTTGGATAT
GGG
90.41741
42.20222
 36





1270
-1
ATAGAATAGTGGCTTGGATA
TGG
86.00061
40.03718
 37





1276
-1
TGGAGCATAGAATAGTGGCT
TGG
91.91503
51.2944
 38





1281
-1
TTTCTTGGAGCATAGAATAG
TGG
71.98696
51.24085
 39





1296
-1
AATCTGCAAGCCAACTTTCT
TGG
83.889
23.52241
 40





1297
 1
ATTCTATGCTCCAAGAAAGT
TGG
76.79961
44.57193
 41





1321
 1
TTGCAGATTCGAACTCGAAG
CGG
91.27714
68.55563
 42





1324
 1
CAGATTCGAACTCGAAGCGG
TGG
95.1427
59.66476
 43





1336
-1
AGGACAAACCCTCAGCATCA
TGG
91.96485
64.63997
 44





1338
 1
AAGCGGTGGCCATGATGCTG
AGG
89.20633
53.30037
 45





1339
 1
AGCGGTGGCCATGATGCTGA
GGG
92.84794
63.02093
 46





1356
-1
AAATGGGACTTGAGATGTGT
AGG
82.02117
58.19267
 47





1372
-1
TCAAGTCTACTATAACAAAT
GGG
66.95566
44.7251
 48





1373
-1
CTCAAGTCTACTATAACAAA
TGG
79.05133
34.85902
 49





1398
 1
AGACTTGAGAAACATGCATT
CGG
78.16459
54.20818
 50





1429
-1
CGGCTTCAACCCACGCAGTT
TGG
99.57277
40.06864
 51





1430
 1
ATATTCGTAGCCAAACTGCG
TGG
92.73046
65.82128
 52





1431
 1
TATTCGTAGCCAAACTGCGT
GGG
97.53917
62.7453
 53





1441
 1
CAAACTGCGTGGGTTGAAGC
CGG
95.87721
52.5429
 54





1449
-1
AACTTCTCCAAGGGTAGCTC
CGG
72.36938
46.01821
 55





1453
 1
GTTGAAGCCGGAGCTACCCT
TGG
97.29983
54.79341
 56





1458
-1
CCAATAATAAACTTCTCCAA
GGG
74.16963
63.94759
 57





1459
-1
TCCAATAATAAACTTCTCCA
AGG
73.52665
52.58996
 58





1469
 1
CCCTTGGAGAAGTTTATTAT
TGG
83.24938
16.35292
 59





1504
 1
AATGAGAATCTTAGTTTTCC
TGG
66.81185
30.01853
 60





1507
 1
GAGAATCTTAGTTTTCCTGG
TGG
85.44233
66.58972
 61





1508
 1
AGAATCTTAGTTTTCCTGGT
GGG
81.70394
50.34528
 62





1511
-1
ACAGTAGGGCAATACCCACC
AGG
96.88637
64.82422
 63





1525
 1
GGTGGGTATTGCCCTACTGT
TGG
78.50407
53.56142
 64





1525
-1
GTCCACCTACGCCAACAGTA
GGG
89.72665
55.22571
 65





1526
-1
TGTCCACCTACGCCAACAGT
AGG
89.39852
57.68998
 66





1531
 1
TATTGCCCTACTGTTGGCGT
AGG
94.7426
55.96514
 67





1534
 1
TGCCCTACTGTTGGCGTAGG
TGG
95.81918
46.27569
 68





1546
 1
GGCGTAGGTGGACACTTTAG
TGG
66.85409
46.38521
 69





1549
 1
GTAGGTGGACACTTTAGTGG
AGG
13.8355
69.31429
 70





1552
 1
GGTGGACACTTTAGTGGAGG
AGG
16.66937
53.37905
 71





1558
 1
CACTTTAGTGGAGGAGGCTA
TGG
45.06996
40.83788
 72





1579
 1
GGAGCATTAATGCGAAATTA
TGG
83.83888
31.63254
 73





1591
-1
CAATGATATTATCAGCTGCG
AGG
87.7846
69.05545
 74





1627
 1
GCACACTTAGTCAATGTTGA
TGG
81.81927
49.79998
 75





1653
 1
AGTTCTAGATCGAAAATCCA
TGG
82.25517
53.08044
 76





1654
 1
GTTCTAGATCGAAAATCCAT
GGG
87.53577
49.36309
 77





1655
 1
TTCTAGATCGAAAATCCATG
GGG
80.87126
69.96673
 78





1656
 1
TCTAGATCGAAAATCCATGG
GGG
87.02608
75.88737
 79





1659
-1
CCAAAATAGATCTTCCCCCA
TGG
52.2372
64.79896
 80





1670
 1
CCATGGGGGAAGATCTATTT
TGG
40.87315
10.50835
 81





1671
 1
CATGGGGGAAGATCTATTTT
GGG
45.38645
26.29582
 82





1681
 1
GATCTATTTTGGGCTATACG
TGG
92.9509
65.38681
 83





1684
 1
CTATTTTGGGCTATACGTGG
TGG
93.89012
56.74158
 84





1687
 1
TTTTGGGCTATACGTGGTGG
TGG
89.67677
47.46932
 85





1690
 1
TGGGCTATACGTGGTGGTGG
AGG
89.86004
51.37554
 86





1702
 1
GGTGGTGGAGGTGAAAACTT
TGG
82.68444
59.30357
 87





1718
 1
ACTTTGGAATCATTGCAGCG
TGG
94.22981
66.30813
 88





1731
 1
TGCAGCGTGGAAAATTAGAC
TGG
88.9567
50.21323
 89





1748
 1
GACTGGTTGCTGTCCCATCA
AGG
98.25535
54.41897
 90





1749
 1
ACTGGTTGCTGTCCCATCAA
GGG
90.45162
53.09475
 91





1750
-1
TGAATATAGTAGCCCTTGAT
GGG
89.11324
51.54889
 92





1751
-1
CTGAATATAGTAGCCCTTGA
TGG
94.41378
50.50505
 93





1772
 1
CTACTATATTCAGTGTTAAA
AGG
79.2234
36.92709
 94





1779
 1
ATTCAGTGTTAAAAGGAATA
TGG
65.11384
40.20542
 95





1789
 1
AAAAGGAATATGGAGATACA
TGG
63.91743
56.49626
 96





1790
 1
AAAGGAATATGGAGATACAT
GGG
68.15381
55.96289
 97





1814
 1
TTGTCAAGTTATTTAACAAA
TGG
47.11745
34.12702
 98





1874
 1
TCATGACTCACTTCATAACC
AGG
35.67077
53.19672
 99





1881
-1
TTGATTATCTATAATATTCC
TGG
75.11494
33.49257
100





1894
 1
AGGAATATTATAGATAATCA
AGG
61.99209
56.41876
101





1918
 1
AAGAATAAGACTACAGTACA
CGG
22.03371
69.66059
102





1942
 1
TACTTCTCTTGCATTTTCCA
TGG
70.76593
46.22116
103





1945
 1
TTCTCTTGCATTTTCCATGG
TGG
64.23993
47.59533
104





1948
-1
CTAGACTATCCACTCCACCA
TGG
94.11237
66.93721
105





1950
 1
TTGCATTTTCCATGGTGGAG
TGG
86.29578
54.03153
106





1992
 1
GAACAAGAGCTTTCCTGAGT
TGG
94.74542
48.70955
107





1993
 1
AACAAGAGCTTTCCTGAGTT
GGG
91.66248
41.21334
108





1994
-1
GTTTTTTTAATACCCAACTC
AGG
81.54763
48.23303
109





2027
 1
CTGATTGCAAAGAATTGAGC
TGG
91.63062
45.41598
110





2049
-1
TACAACACCACTGTAGAAGA
TGG
87.1194
55.28908
111





2053
 1
GATACTACCATCTTCTACAG
TGG
85.64352
61.29416
112





2088
 1
TAACACTACTAATTTTCAAA
AGG
52.892
37.63415
113





2113
 1
ATTTTGCTTGATAGATCAGC
TGG
89.54269
45.49052
114





2114
 1
TTTTGCTTGATAGATCAGCT
GGG
83.06148
69.66798
115





2168
-1
ACAATTGCAGTTTCTGGAAT
TGG
83.65549
27.85148
116





2174
-1
ATTTTGACAATTGCAGTTTC
TGG
71.89285
13.8671
117





2190
 1
AACTGCAATTGTCAAAATTT
TGG
51.26105
21.65345
118





2215
 1
AAATTGTATGAAGAAGATGT
AGG
50.42741
60.89104
119





2221
 1
TATGAAGAAGATGTAGGAGT
TGG
74.0566
40.67797
120





2245
 1
GTGTATGTATTGTACCCTTA
CGG
87.47868
52.95626
121





2248
 1
TATGTATTGTACCCTTACGG
TGG
88.53147
70.67558
122





2248
-1
TGTCCATTATACCACCGTAA
GGG
98.58031
65.38253
123





2249
-1
TTGTCCATTATACCACCGTA
AGG
96.99197
52.80478
124





2256
 1
GTACCCTTACGGTGGTATAA
TGG
86.96972
36.4762
125





2291
-1
ATTCCAGCTCGATGAGGGAA
AGG
85.04932
58.09939
126





2296
-1
ACATGATTCCAGCTCGATGA
GGG
95.76248
60.07786
127





2297
-1
TACATGATTCCAGCTCGATG
AGG
96.20958
66.08229
128





2299
 1
ATTCCTTTCCCTCATCGAGC
TGG
72.65637
45.46834
129





2318
 1
CTGGAATCATGTACGAAGTT
TGG
91.44916
38.23198
130





2333
 1
AAGTTTGGTACGCAGCTACC
TGG
97.19351
52.48753
131





2334
 1
AGTTTGGTACGCAGCTACCT
GGG
99.34096
54.73117
132





2340
-1
ATTATCTTCTTGCTTCTCCC
AGG
65.57768
47.7251
133





2369
 1
ATAATGAAAAGCATATAAAC
TGG
54.90991
38.48962
134





2370
 1
TAATGAAAAGCATATAAACT
GGG
52.19307
58.36084
135





2408
-1
CTTGGATTTTGGGACACATA
AGG
86.23392
45.11168
136





2418
-1
ATACGCCATTCTTGGATTTT
GGG
83.33913
19.22763
137





2419
-1
GATACGCCATTCTTGGATTT
TGG
84.63939
21.34065
138





2424
 1
TGTGTCCCAAAATCCAAGAA
TGG
72.13536
54.39396
139





2426
-1
TAATTGAGATACGCCATTCT
TGG
94.47859
25.9349
140





2441
 1
GAATGGCGTATCTCAATTAT
AGG
87.03451
33.66134
141





2442
 1
AATGGCGTATCTCAATTATA
GGG
83.63841
42.44805
142





2455
 1
AATTATAGGGACCTTGATTT
AGG
51.02913
28.76282
143





2455
-1
GATCAGTTTTTCCTAAATCA
AGG
81.50991
49.62644
144





2477
-1
GTGTAATTATTAGGACTCTT
GGG
63.03567
37.12308
145





2478
-1
GGTGTAATTATTAGGACTCT
TGG
87.51322
36.60593
146





2486
-1
CGTGCTTGGGTGTAATTATT
AGG
89.37979
20.5205
147





2499
-1
TTCACCCCAGATACGTGCTT
GGG
96.64962
52.4944
148





2500
-1
TTTCACCCCAGATACGTGCT
TGG
98.66657
52.02383
149





2504
 1
ATTACACCCAAGCACGTATC
TGG
74.79545
34.14523
150





2505
 1
TTACACCCAAGCACGTATCT
GGG
95.37111
41.9996
151





2506
 1
TACACCCAAGCACGTATCTG
GGG
98.75694
62.87462
152





2521
 1
ATCTGGGGTGAAAAGTACTT
TGG
87.2143
49.68151
153





2547
 1
AAACTTTGACAAGTTAGTTA
AGG
62.31057
39.88018
154





2565
-1
AAAATTATTGGGATCAACTT
TGG
58.80076
33.4693
155





2576
-1
TCGTTTCTAAAAAAATTATT
GGG
48.06619
22.76069
156





2577
-1
CTCGTTTCTAAAAAAATTAT
TGG
55.23725
14.78939
157





2608
-1
GACGTCGTGGCGGAAGAGGT
GGG
98.09602
65.65899
158





2609
-1
TGACGTCGTGGCGGAAGAGG
TGG
91.81254
50.45154
159





2612
-1
TAATGACGTCGTGGCGGAAG
AGG
98.07448
47.29841
160





2618
-1
AATAATTAATGACGTCGTGG
CGG
89.39021
64.62174
161





2621
-1
AAAAATAATTAATGACGTCG
TGG
78.57945
59.53964
162





2684
-1
ATATATAACAGATACATGTA
TGG
62.7441
56.45533
163





2719
-1
CTTAGGAGCATACATAGTAC
AGG
83.60953
55.16134
164





2736
-1
TACTGTAGATGTTCATACTT
AGG
72.89098
47.9896
165





2776
 1
TGTAGACATCATAAGATATA
TGG
61.18482
42.96127
166





2807
 1
AAATTATCTTTCTTATTTAA
TGG
40.09022
10.00087
167
















TABLE 2







gRNA sequences targeted for CsCBDAS


Position












on SEQ.



Efficiency
SEQ.


ID. NO.: 4
Strand
Sequence
PAM
Score
ID NO.





927
-1
AGCTTTATATATTGGAGCAG
GGG
54.68597
168





928
-1
TAGCTTTATATATTGGAGCA
GGG
56.13836
169





929
-1
ATAGCTTTATATATTGGAGC
AGG
39.33975
170





935
-1
CTATTTATAGCTTTATATAT
TGG
24.05235
171





947
 1
CAATATATAAAGCTATAAAT
AGG
27.93541
172





971
-1
TAATGAATTTTGAATTACTA
TGG
34.40115
173





1022
 1
AGTACTCAACATTCTCCTTT
TGG
25.84144
174





1026
-1
TATCTTGCAAACAAACCAAA
AGG
54.35998
175





1075
-1
GAGGATTAGCAATGGAAGTT
TGG
35.85374
176





1083
-1
GTTTTCTCGAGGATTAGCAA
TGG
61.84745
177





1094
-1
CATTTAAGGAAGTTTTCTCG
AGG
62.59449
178





1108
-1
TATATTGCGAGAAGCATTTA
AGG
22.98833
179





1133
-1
TTTAGATTTGTTGCATTATT
GGG
18.30136
180





1134
-1
TTTTAGATTTGTTGCATTAT
TGG
22.12177
181





1177
-1
TTAGGACAGACATATACAAT
GGG
50.41844
182





1178
-1
TTTAGGACAGACATATACAA
TGG
52.3325
183





1195
-1
GATTGTGTATTGTCGAATTT
AGG
29.00652
184





1239
-1
GACGATAACAAGTGGTTTTG
GGG
53.7312
185





1240
-1
TGACGATAACAAGTGGTTTT
GGG
22.17034
186





1241
-1
GTGACGATAACAAGTGGTTT
TGG
32.43789
187





1247
-1
GAAGGAGTGACGATAACAAG
TGG
66.33896
188





1265
-1
TGGATATGAGAGACATGTGA
AGG
69.66263
189





1279
 1
TCACATGTCTCTCATATCCA
AGG
60.60093
190





1285
-1
TGGAGCATAGAATAGTGCCT
TGG
51.2944
191





1305
-1
AATCTGCAAGCCAACTTTCT
TGG
23.52241
192





1306
 1
ATTCTATGCTCCAAGAAAGT
TGG
44.57193
193





1330
 1
TTGCAGATTCGAACTCGAAG
TGG
63.85956
194





1333
 1
CAGATTCGAACTCGAAGTGG
TGG
60.21029
195





1347
 1
AAGTGGTGGTCATGATTCTG
AGG
61.14171
196





1348
 1
AGTGGTGGTCATGATTCTGA
GGG
66.1321
197





1365
-1
AAATGGGACTTGAGATATGT
AGG
48.94352
198





1381
-1
TCAAGTCTACTATAACAAAT
GGG
44.7251
199





1382
-1
CTCAAGTCTACTATAACAAA
TGG
34.85902
200





1438
-1
CGGCTTCAACCCATGCAGTT
TGG
41.98925
201





1439
 1
ATGTTCATAGCCAAACTGCA
TGG
53.04758
202





1440
 1
TGTTCATAGCCAAACTGCAT
GGG
62.17149
203





1450
 1
CAAACTGCATGGGTTGAAGC
CGG
57.17967
204





1458
-1
AACTTCTCCAAGGGTAGCTC
CGG
46.01821
205





1462
 1
GTTGAAGCCGGAGCTACCCT
TGG
56.02393
206





1467
-1
CCAATAATAAACTTCTCCAA
GGG
65.85225
207





1468
-1
CCCAATAATAAACTTCTCCA
AGG
53.53392
208





1478
 1
CCCTTGGAGAAGTTTATTAT
TGG
20.92657
209





1479
 1
CCTTGGAGAAGTTTATTATT
GGG
22.0283
210





1509
 1
GAAAAATGAGAGTCTTAGTT
TGG
32.53304
211





1516
 1
GAGAGTCTTAGTTTGGCTGC
TGG
40.11193
212





1517
 1
AGAGTCTTAGTTTGGCTGCT
GGG
53.68777
213





1534
-1
GTCCACCTGCGCAAACAGTA
GGG
51.52452
214





1540
 1
TATTGCCCTACTGTTTGCGC
AGG
51.06289
215





1543
 1
TGCCCTACTGTTTGCGCAGG
TGG
42.48452
216





1552
 1
GTTTGCGCAGGTGGACACTT
TGG
56.37796
217





1558
 1
GCAGGTGGACACTTTGGTGG
AGG
55.26903
218





1561
 1
GGTGGACACTTTGGTGGAGG
AGG
53.00302
219





1567
 1
CACTTTGGTGGAGGAGGCTA
TGG
43.62549
220





1580
-1
AGGCCATAGCTTCTCATCAA
TGG
51.67311
221





1588
 1
GGACCATTGATGAGAAGCTA
TGG
51.46816
222





1596
 1
GATGAGAAGCTATGGCCTCG
CGG
72.19046
223





1600
-1
CAATGATATTATCAGCCGCG
AGG
70.84796
224





1636
 1
GCACACTTAGTCAACGTTCA
TGG
51.20136
225





1662
 1
AGTGCTAGATCGAAAATCTA
TGG
38.12486
226





1663
 1
GTGCTAGATCGAAAATCTAT
GGG
38.40821
227





1664
 1
TGCTAGATCGAAAATCTATG
GGG
57.41791
228





1665
 1
GCTAGATCGAAAATCTATGG
GGG
68.96928
229





1679
 1
CTATGGGGGAAGATCTCTTT
TGG
21.51399
230





1680
 1
TATGGGGGAAGATCTCTTTT
GGG
27.66662
231





1690
 1
GATCTCTTTTGGGCTTTACG
TGG
59.22284
232





1693
 1
CTCTTTTGGGCTTTACGTGG
TGG
46.97883
233





1696
 1
TTTTGGGCTTTACGTGGTGG
TGG
42.65142
234





1711
 1
GGTGGTGGAGCAGAAAGCTT
CGG
56.63543
235





1727
 1
GCTTCGGAATCATTGTAGCA
TGG
58.92273
236





1740
 1
TGTAGCATGGAAAATTAGAC
TGG
47.49685
237





1759
-1
CACTAAACATAGTAGACTTT
GGG
33.44838
238





1760
-1
ACACTAAACATAGTAGACTT
TGG
43.66107
239





1785
 1
GTTTAGTGTTAAAAAGATCA
TGG
50.38465
240





1820
 1
TTGTCAAGTTAGTTAACAAA
TGG
43.40152
241





1880
 1
TCATGACTCACTTCATAACT
AGG
50.92123
242





1900
 1
AGGAACATTACAGATAATCA
AGG
55.24406
243





1901
 1
GGAACATTACAGATAATCAA
GGG
59.25054
244





1948
 1
TACTTCTCTTCAGTTTTCCT
TGG
33.58233
245





1951
 1
TTCTCTTCAGTTTTCCTTGG
TGG
33.88507
246





1954
-1
CTAGACTATCCACTCCACCA
AGG
70.9998
247





1956
 1
TTCAGTTTTCCTTGGTGGAG
TGG
49.36462
248





1998
 1
GAACAAGAGTTTTCCTGAGT
TGG
44.24263
249





1999
 1
AACAAGAGTTTTCCTGAGTT
GGG
38.37804
250





2000
-1
GTTTTTTTAATACCCAACTC
AGG
47.70664
251





2013
 1
TGAGTTGGGTATTAAAAAAA
CGG
35.28865
252





2033
 1
CGGATTGCAGACAATTGAGC
TGG
51.29451
253





2059
 1
GATACTATCATCTTCTATAG
TGG
50.42687
254





2094
 1
CGACACTGATAATTTTAACA
AGG
47.46003
255





2119
 1
ATTTTGCTTGATAGATCCGC
TGG
45.52498
256





2120
 1
TTTTGCTTGATAGATCCGCT
GGG
66.15602
257





2124
-1
GAAAGCACCGTTCTGCCCAG
CGG
74.32675
258





2128
 1
GATAGATCCGCTGGGCAGAA
CGG
60.09095
259





2174
-1
ACAAATACAGATTCTGGAAT
TGG
29.64316
260





2180
-1
ATTTGGACAAATACAGATTC
TGG
32.93366
261





2196
 1
ATCTGTATTTGTCCAAATTT
TGG
19.19094
262





2197
-1
CATATAATTTTTCCAAAATT
TGG
22.7704
263





2221
 1
AAATTATATGAAGAAGATAT
AGG
48.31475
264





2227
 1
TATGAAGAAGATATAGGAGC
TGG
37.66845
265





2228
 1
ATGAAGAAGATATAGGAGCT
GGG
55.50564
266





2251
 1
ATGTATGCGTTGTACCCTTA
CGG
51.83563
267





2254
 1
TATGCGTTGTACCCTTACGG
TGG
70.89895
268





2254
-1
CATCCATTATACCACCGTAA
GGG
65.50071
269





2255
-1
TCATCCATTATACCACCGTA
AGG
52.60015
270





2262
 1
GTACCCTTACGGTGGTATAA
TGG
37.81553
271





2297
-1
ATTCCAGCTCGATGAGGGAA
TGG
52.19017
272





2302
-1
ACAAGATTCCAGCTCGATGA
GGG
58.64874
273





2303
-1
TACAAGATTCCAGCTCGATG
AGG
64.02127
274





2305
 1
ATTCCATTCCCTCATCGAGC
TGG
52.09796
275





2324
 1
CTGGAATCTTGTATGAGTTA
TGG
42.0067
276





2339
 1
AGTTATGGTACATATGTAGC
TGG
42.23778
277





2340
 1
GTTATGGTACATATGTAGCT
GGG
57.33278
278





2375
 1
ATAACGAAAAGCATCTAAAC
TGG
36.44159
279





2414
-1
CTTGGATTTTGGGACACATA
AGG
45.61377
280





2424
-1
ATATGCCAATCTTGGATTTT
GGG
20.28758
281





2425
-1
GATATGCCAATCTTGGATTT
TGG
27.04467
282





2430
 1
TGTGTCCCAAAATCCAAGAT
TGG
48.79389
283





2432
-1
TAATTGAGATATGCCAATCT
TGG
37.73585
284





2461
 1
AATTATAGAGACCTTGATAT
AGG
48.98627
285





2461
-1
GATCATTTATTCCTATATCA
AGG
43.92608
286





2483
-1
GTGTAATTATTTGGATTCTT
GGG
35.25388
287





2484
-1
TGTGTAATTATTTGGATTCT
TGG
32.83863
288





2492
-1
CGTGCTTGTGTGTAATTATT
TGG
14.08447
289





2510
 1
ATTACACACAAGCACGTATT
TGG
23.81028
290





2511
 1
TTACACACAAGCACGTATTT
GGG
22.17912
291





2512
 1
TACACACAAGCACGTATTTG
GGG
52.47749
292





2527
 1
ATTTGGGGTGAGAAGTATTT
TGG
23.04503
293





2543
 1
ATTTTGGTAAAAATTTTGAC
AGG
51.19317
294





2565
 1
GCTAGTAAAAGTGAAAACCC
TGG
70.67066
295





2571
-1
AAAATTATTGGGATCAACCA
GGG
60.21659
296





2572
-1
AAAAATTATTGGGATCAACC
AGG
51.83397
297





2582
-1
TCGTTTCTAAAAAAATTATT
GGG
23.03526
298





2583
-1
TTCGTTTCTAAAAAAATTAT
TGG
16.97799
299





2614
-1
GATGATGCCGTGGAAGAGGT
GGG
70.41151
300





2615
-1
TGATGATGCCGTGGAAGAGG
TGG
55.81165
301





2618
 1
AAAGCATCCCACCTCTTCCA
CGG
62.29392
302





2618
-1
TAATGATGATGCCGTGGAAG
AGG
53.28713
303





2624
-1
GATCATTAATGATGATGCCG
TGG
59.64588
304





1535
-1
TGTCCACCTGCGCAAACAGT
AGG
50.51317
824





1555
-1
TGCGCAGGTGGACACTTTGG
TGG
53.04254
825
















TABLE 3







gRNA sequences targeted for CsPT













Position








on SEQ.



Specificity
Efficiency
SEQ.


ID. NO.: 7
Strand
Sequence
PAM
Score
Score
ID NO.





2533
 1
CTATAAATAATATAATGTGT
TGG
50.15504
52.66784
305





2548
-1
TCATATAATTAAGACACATT
AGG
58.08987
39.51504
306





2605
-1
GAAGATTTTACGAGTTCATG
TGG
78.97558
61.36868
307





2630
-1
GGTTGTACAATGCAGGAAGC
AGG
94.76609
53.10248
308





2637
-1
TATATTGGGTTGTACAATGC
AGG
89.85941
51.19467
309





2651
-1
ATCTGATTATATTTTATATT
GGG
39.36258
19.27719
310





2652
-1
CATCTGATTATATTTTATAT
TGG
30.46803
22.76394
311





2717
 1
TTTTGTATGTACCAATAAAG
AGG
62.64158
47.70007
312





2717
-1
TGTGTTATTATCCTCTTTAT
TGG
59.87869
13.1344
313





2736
 1
GAGGATAATAACACAATTAA
TGG
53.00849
32.95598
314





2758
 1
GTAGTCATTTTGAGTATTAC
CGG
65.22014
38.84988
315





2759
 1
TAGTCATTTTGAGTATTACC
GGG
71.968
55.98069
316





2766
-1
TGCGTTAACAAATTACGACC
CGG
95.86365
58.36396
317





2886
 1
ATAGATAATTTAATTCAAAA
TGG
40.48669
36.67217
318





2895
 1
TTAATTCAAAATGGCAAACC
TGG
77.80096
45.1845
319





2898
 1
ATTCAAAATGGCAAACCTGG
AGG
80.97824
62.29508
320





2902
-1
AGCATTTTGGTTAATCCTCC
AGG
91.75956
45.33793
321





2915
-1
TTCATGCAATCTTAGCATTT
TGG
58.15822
22.94305
322





2962
-1
ATCATTTCTTATTTAATTAC
AGG
45.18918
19.61169
323





2988
 1
GAAATGATGAGAAGAAATGA
TGG
34.5444
57.85824
324





2997
 1
AGAAGAAATGATGGCAAACC
TGG
78.33764
53.71781
325





3004
-1
TAAGAATTTATTAAAAAACC
AGG
51.75369
55.62077
326





3817
 1
TATAGATGAGATGAGATACC
TGG
85.29248
42.90625
327





3818
 1
ATAGATGAGATGAGATACCT
GGG
81.64461
53.0755
328





3819
 1
TAGATGAGATGAGATACCTG
GGG
90.29784
74.15808
329





3824
-1
TGCTGGGATTATCTGGCCCC
AGG
99.76501
49.69658
330





3831
-1
CTATACTTGCTGGGATTATC
TGG
91.47874
32.32128
331





3840
-1
ATGTGGCTGCTATACTTGCT
GGG
78.11018
54.0404
332





3841
-1
TATGTGGCTGCTATACTTGC
TGG
89.74351
29.36968
333





3854
 1
AGCAAGTATAGCAGCCACAT
AGG
88.70643
65.60028
334





3857
-1
AATTGTTCTCCTATCCTATG
TGG
83.08341
61.11113
335





3859
 1
GTATAGCAGCCACATAGGAT
AGG
88.86311
52.55338
336





3880
-1
AACTTGACATTATTTTGTTC
TGG
60.92679
30.32567
337





3896
 1
ACAAAATAATGTCAAGTTTC
TGG
60.06363
20.93761
338





3910
-1
TCAACGTTGGCAAGTAAATA
TGG
58.30165
30.24285
339





3923
-1
AAGATTTGGCATATCAACGT
TGG
83.63482
54.17247
340





3937
-1
TATATATTTCTTTCAAGATT
TGG
43.05887
26.00648
341





3994
 1
AATTATTTAAACTAATTATA
AGG
27.59395
24.43668
342





4038
-1
AAAGATGCTTCAGACGTTGA
AGG
87.29059
53.27521
343





4069
-1
TAAATCAATGGGTGCAGCTT
TGG
87.80614
30.65775
344





4080
-1
CTAGCATTTATTAAATCAAT
GGG
56.10289
36.01011
345





4081
-1
GCTAGCATTTATTAAATCAA
TGG
77.76418
42.71614
346





4095
 1
TTGATTTAATAAATGCTAGC
AGG
80.47522
49.30411
347





4109
 1
GCTAGCAGGAAAGTAAAAGA
AGG
82.20668
59.95433
348





4121
-1
ATTTCAATTTGATTATTTTC
AGG
42.72452
19.67918
349





4166
 1
ATACAATCAAATTAAAATAC
AGG
41.34514
46.2972
350





4167
 1
TACAATCAAATTAAAATACA
GGG
38.73103
56.21882
351





4186
 1
AGGGAAATCGTTTATGTTAT
TGG
77.90025
22.30105
352





4224
-1
GAAACACGTATTTTAGAGAT
TGG
86.63062
41.49631
353





4473
-1
ACCACTTAAGAATTTTCTTT
TGG
55.0929
24.80139
354





4483
 1
GCCAAAAGAAAATTCTTAAG
TGG
64.12831
50.01367
355





4515
-1
CAAGATATACTATATAATAT
AGG
44.93458
38.54408
356





4527
 1
CTATATTATATAGTATATCT
TGG
56.9374
31.81188
357





4528
 1
TATATTATATAGTATATCTT
GGG
49.01302
47.17769
358





4573
-1
CCTACCATTTGAGTTGAGGT
GGG
84.17055
57.97852
359





4574
-1
TCCTACCATTTGAGTTGAGG
TGG
72.81109
48.59222
360





4577
-1
TTGTCCTACCATTTGAGTTG
AGG
79.45986
49.37752
361





4580
 1
ATTACCCACCTCAACTCAAA
TGG
78.76399
43.71813
362





4584
 1
CCCACCTCAACTCAAATGGT
AGG
88.70205
65.11965
363





4603
 1
TAGGACAAGAGCTGCTCTGC
TGG
96.15743
52.64779
364





4635
 1
ATGTGAAATTTGTAATAATA
TGG
46.50782
21.55043
365





4636
 1
TGTGAAATTTGTAATAATAT
GGG
44.42897
39.03579
366





4648
-1
TTTTTTTAATCTGCTTGCAC
AGG
81.28024
42.68662
367





4763
 1
TACTCTTATAGTAACCAGAG
AGG
91.51612
71.60058
368





4766
-1
ATAGTAATTAGTTACCTCTC
TGG
88.7712
40.73368
369





4898
-1
TTATATAAAAATATATTCGT
TGG
52.69209
44.66746
370





4915
 1
AATATATTTTTATATAAATA
TGG
25.28327
23.82603
371





4916
 1
ATATATTTTTATATAAATAT
GGG
20.87203
33.8773
372





4989
 1
AATTATCTCATCTAACTAAA
TGG
61.01435
39.06579
373





5099
 1
TGTTAGTAAAGTAAAATACC
AGG
75.01818
60.50068
374





5106
-1
TGCATTTCTTCTCAATTTCC
TGG
55.3698
27.57883
375





5121
 1
GAAATTGAGAAGAAATGCAG
TGG
66.10407
61.792
376





5125
 1
TTGAGAAGAAATGCAGTGGA
AGG
82.89142
54.57658
377





5146
 1
GGATTTTGCTTCCATCTAAA
TGG
80.36516
33.72734
378





5146
-1
ATTCTGTTCCACCATTTAGA
TGG
81.59639
41.29933
379





5149
 1
TTTTGCTTCCATCTAAATGG
TGG
73.22228
58.83392
380





5177
-1
TACTGTTTTGGTATTTTTGG
TGG
52.22343
46.50211
381





5180
-1
GGCTACTGTTTTGGTATTTT
TGG
57.1959
14.32438
382





5189
-1
TATATATTTGGCTACTGTTT
TGG
70.57808
21.40652
383





5201
-1
GGTGGACCACTCTATATATT
TGG
88.25064
28.7384
384





5206
 1
CAGTAGCCAAATATATAGAG
TGG
80.8101
56.01321
385





5219
-1
ATAACTATAAAAATGAAGGG
TGG
58.67371
66.9197
386





5222
-1
ATAATAACTATAAAAATGAA
GGG
32.04873
55.75115
387





5223
-1
GATAATAACTATAAAAATGA
AGG
44.11535
43.57819
388





5249
-1
AGCATAATTGTGGCACTGTT
TGG
91.98088
35.4872
389





5259
-1
TTGGATTATGAGCATAATTG
TGG
56.2773
59.04583
390





5278
-1
AAATATCAGTAAACACAGCT
TGG
83.11907
51.55396
391





5301
-1
TGATCTACCACTAGCTTCAG
GGG
89.84025
61.37871
392





5302
-1
CTGATCTACCACTAGCTTCA
GGG
92.57816
49.17639
393





5303
-1
CCTGATCTACCACTAGCTTC
AGG
91.25108
35.18826
394





5305
 1
GATATTTCCCCTGAAGCTAG
TGG
85.99172
60.18662
395





5314
 1
CCTGAAGCTAGTGGTAGATC
AGG
92.20769
47.61895
396





5403
 1
TACAAAAAATTGTTGTAGCT
AGG
60.78952
43.73403
397





5404
 1
ACAAAAAATTGTTGTAGCTA
GGG
62.02877
48.6504
398





5484
-1
TGTGGGTCATAAATAAAGTT
GGG
63.20534
39.71502
399





5485
-1
TTGTGGGTCATAAATAAAGT
TGG
76.86574
49.65417
400





5501
-1
ATAACAATTATAATTTTTGT
GGG
35.20761
38.75031
401





5502
-1
GATAACAATTATAATTTTTG
TGG
40.09979
38.6558
402





5524
-1
TATGCTATTGAACTTCTAGT
AGG
73.91656
50.40142
403





5565
-1
TAATTTGAGTTAATAATTTT
AGG
35.14236
12.79093
404





5737
-1
TTTACGATCTTCACATTGAC
AGG
86.84326
43.60669
405





5760
 1
AAGATCGTAAATCTGATTGA
TGG
79.39694
53.97011
406





5802
-1
CAAGGCATTCTTTTTTTTGG
TGG
78.28594
36.74021
407





5805
-1
GTTCAAGGCATTCTTTTTTT
TGG
77.61678
15.8281
408





5820
-1
AAGTTGGTCTCTGATGTTCA
AGG
78.39446
48.10956
409





5836
-1
ATAACACAAATTTAATAAGT
TGG
49.51096
36.82689
410





5872
-1
GGGAGAGCAGTGGATTGTTT
GGG
90.26781
39.34907
411





5873
-1
TGGGAGAGCAGTGGATTGTT
TGG
88.36253
32.36556
412





5882
-1
ATTTTGGTATGGGAGAGCAG
TGG
94.63991
58.35153
413





5892
-1
ATTTGTTTTAATTTTGGTAT
GGG
41.95799
36.82488
414





5893
-1
TATTTGTTTTAATTTTGGTA
TGG
44.60475
38.88369
415





5898
-1
ATATATATTTGTTTTAATTT
TGG
27.84114
26.40511
416





5979
-1
TTAGATTTGAGAGTTAAATG
TGG
55.46527
69.10913
417





5998
 1
AACTCTCAAATCTAAATTTT
TGG
45.16858
7.464133
418





5999
 1
ACTCTCAAATCTAAATTTTT
GGG
45.01203
12.96086
419





6000
 1
CTCTCAAATCTAAATTTTTG
GGG
47.56245
39.64619
420





6033
 1
TTAATCTTTTTTGTTATTTA
AGG
39.86712
15.52071
421





6036
 1
ATCTTTTTTGTTATTTAAGG
TGG
61.57787
43.97947
422





9091
-1
ATACTTTCTGTGCAAAAATA
TGG
63.71265
24.27214
423





9190
-1
TAGCATTTACTTCATGCGCT
TGG
88.85683
40.57145
424





9214
 1
GTAAATGCTATGATTGTATA
TGG
67.17232
42.70364
425





9238
-1
TAAACTTTGGGAAGGCATGT
TGG
82.83401
50.01002
426





9246
-1
TAAAATTTTAAACTTTGGGA
AGG
42.81657
55.00889
427





9250
-1
CAACTAAAATTTTAAACTTT
GGG
34.37113
28.08549
428





9251
-1
GCAACTAAAATTTTAAACTT
TGG
48.74808
29.25676
429





9286
 1
ACTGAATGATTATCAGATTC
TGG
81.6358
34.3321
430





9289
 1
GAATGATTATCAGATTCTGG
AGG
77.96775
65.74172
431





9324
-1
AATAATAATAATGTGTTAAC
AGG
53.34883
37.14458
432





9379
 1
GTTGTGTATTTTTTTCTTTT
AGG
44.5762
18.62322
433





9420
-1
TAATATTATATTTAATTAGA
GGG
39.10845
36.29759
434





9421
-1
TTAATATTATATTTAATTAG
AGG
31.68565
39.80062
435





9510
 1
GAGACACACACATACCCTAA
TGG
86.59004
50.40612
436





9513
-1
AATCGCAAAAAATTCCATTA
GGG
57.75175
49.45903
437





9514
-1
CAATCGCAAAAAATTCCATT
AGG
59.61224
37.96305
438





9567
 1
GTTTTGTAGATGAAAACTCT
TGG
57.02108
52.35675
439





9570
 1
TTGTAGATGAAAACTCTTGG
TGG
76.57239
57.2048
440





9585
 1
CTTGGTGGAGCAATGTTTAG
AGG
81.85424
43.12889
441





9586
 1
TTGGTGGAGCAATGTTTAGA
GGG
81.38342
49.63563
442





9613
 1
TTATTGTAAGAGTATTTAAT
TGG
42.08458
25.1192
443





9621
 1
AGAGTATTTAATTGGTGTTT
TGG
28.15366
29.48476
444





9622
 1
GAGTATTTAATTGGTGTTTT
GGG
59.62235
18.36114
445





9623
 1
AGTATTTAATTGGTGTTTTG
GGG
51.98403
49.93003
446





9642
 1
GGGGTGTCGATATAATAATG
AGG
74.06144
54.09539
447





9648
 1
TCGATATAATAATGAGGTTT
TGG
66.02342
29.35407
448





9649
 1
CGATATAATAATGAGGTTTT
GGG
54.71808
18.42158
449





9664
 1
GTTTTGGGATTATTATTGTG
AGG
54.73719
60.27909
450





9680
 1
TGTGAGGATTTAATAAAGTA
TGG
62.9832
45.48923
451





9702
 1
GTAATTAGTTTGAAATGAAA
AGG
42.78812
38.59876
452





9731
-1
CAATCAATAATAATCTTCAT
GGG
51.22321
46.33554
453





9732
-1
TCAATCAATAATAATCTTCA
TGG
52.54212
42.7126
454





9765
 1
AATATTAAAAAGAAAAAATG
AGG
32.91192
50.40054
455





9766
 1
ATATTAAAAAGAAAAAATGA
GGG
31.58425
59.29349
456





9775
 1
AGAAAAAATGAGGGAAAGAA
AGG
37.46114
45.55358
457





9776
 1
GAAAAAATGAGGGAAAGAAA
GGG
19.94773
54.89242
458
















TABLE 4







gRNA sequences targeted for CsOLS













Position on








SEQ. ID.



Specificity
Efficiency
SEQ.


NO.: 10
Strand
Sequence
PAM
Score
Score
ID NO.





 606
 1
CATACATAATATATATATAT
AGG
38.80015
37.5899
459





 694
 1
TATGAATCATCTTCGTGCTG
AGG
92.51688
55.65201
460





 695
 1
ATGAATCATCTTCGTGCTGA
GGG
92.26269
55.16668
461





 700
 1
TCATCTTCGTGCTGAGGGTC
CGG
97.38454
45.93456
462





 708
-1
CCGATGGCGAGAACGGAGGC
CGG
99.23283
53.34917
463





 712
-1
GGTGCCGATGGCGAGAACGG
AGG
99.09248
64.53414
464





 715
-1
GGCGGTGCCGATGGCGAGAA
CGG
98.67263
50.70203
465





 719
 1
CCGGCCTCCGTTCTCGCCAT
CGG
99.67834
47.54908
466





 724
-1
CTCCGGATTGGCGGTGCCGA
TGG
99.54478
39.05761
467





 733
 1
CGCCATCGGCACCGCCAATC
CGG
99.93027
36.80185
468





 733
-1
TAAAATGTTCTCCGGATTGG
CGG
90.17454
51.19588
469





 736
-1
TATTAAAATGTTCTCCGGAT
TGG
88.80068
45.44233
470





 741
-1
TCTTGTATTAAAATGTTCTC
CGG
73.04651
45.0436
471





 771
-1
GTGACCCGAAAGTAGTAGTC
AGG
96.00665
45.73853
472





 777
 1
AGTTTCCTGACTACTACTTT
CGG
89.23006
34.52546
473





 778
 1
GTTTCCTGACTACTACTTTC
GGG
92.15777
29.58151
474





 793
-1
TTGAGTCATGTGTTCACTTT
TGG
73.05001
32.95869
475





 876
-1
CATGGAAAAGTATTATTAGT
TGG
56.37872
42.87624
476





 894
-1
AAATAGATAATGCTTATACA
TGG
65.92159
54.09676
477





 917
 1
ATTATCTATTTATATAATAA
AGG
38.73228
37.78037
478





1000
 1
CTTACTTTATATGTATATGT
AGG
48.96629
45.21245
479





1019
 1
TAGGTGACAAAAGTATGATA
AGG
63.42832
45.85195
480





1071
 1
TCTAAAGCAAAACCCAAGAT
TGG
65.43717
53.59795
481





1072
-1
TCTCGTGCTCCGCCAATCTT
GGG
95.9415
42.77202
482





1073
-1
ATCTCGTGCTCCGCCAATCT
TGG
97.96263
28.38723
483





1074
 1
AAAGCAAAACCCAAGATTGG
CGG
51.53179
58.86478
484





1095
 1
GGAGCACGAGATGCAAACTC
TGG
94.77341
54.21811
485





1116
 1
GGATGCACGTCAAGACATGT
TGG
94.27103
64.06157
486





1125
 1
TCAAGACATGTTGGTAGTTG
AGG
77.53627
54.5857
487





1138
 1
GTAGTTGAGGTTCCAAAACT
TGG
70.93462
44.35067
488





1139
 1
TAGTTGAGGTTCCAAAACTT
GGG
68.9903
55.5133
489





1139
-1
CAAGCATCCTTCCCAAGTTT
TGG
89.31912
22.9458
490





1143
 1
TGAGGTTCCAAAACTTGGGA
AGG
81.7532
56.98226
491





1158
 1
TGGGAAGGATGCTTGTGCAA
AGG
86.76519
63.49574
492





1170
-1
GGGTTGACCCCATTCTTTGA
TGG
82.91197
29.12733
493





1172
 1
GTGCAAAGGCCATCAAAGAA
TGG
72.44945
46.30634
494





1173
 1
TGCAAAGGCCATCAAAGAAT
GGG
70.64931
38.21922
495





1174
 1
GCAAAGGCCATCAAAGAATG
GGG
78.23762
71.1964
496





1190
-1
AAATGAGTGATTTTAGACTT
GGG
54.17939
50.10922
497





1191
-1
TAAATGAGTGATTTTAGACT
TGG
64.67096
46.53421
498





1233
-1
GTCTGCACCGGGCATGTCAG
TGG
97.80392
53.96746
499





1237
 1
GCATCAACCACTGACATGCC
CGG
92.69975
59.55302
500





1244
-1
GCGCAATGGTAGTCTGCACC
GGG
99.19901
57.07458
501





1245
-1
AGCGCAATGGTAGTCTGCAC
CGG
98.52043
48.84276
502





1258
-1
GTCCGAGAAGCTTAGCGCAA
TGG
94.35214
55.9059
503





1267
 1
TACCATTGCGCTAAGCTTCT
CGG
91.29961
37.63117
504





1286
-1
ATCATCACACGCTTCACTGA
GGG
89.91737
65.13509
505





1287
-1
CATCATCACACGCTTCACTG
AGG
96.68067
65.997
506





1309
 1
CGTGTGATGATGTATCAACT
AGG
84.90515
64.72637
507





1318
 1
ATGTATCAACTAGGCTGTTA
TGG
89.65638
40.36473
508





1321
 1
TATCAACTAGGCTGTTATGG
TGG
89.40848
68.01826
509
















TABLE 5







gRNA sequences targeted for CsAAE1













Position on








SEQ. ID.



Specificity
Efficiency
SEQ.


NO.: 13
Strand
Sequence
PAM
Score
Score
ID No.





 1017
 1
ATTCAAAGTGAGAAAATTGT
TGG
 46.82883
42.08966
510





 1036
-1
AACCAACAAGATCATGAGAA
GGG
 65.50328
65.57937
511





 1037
-1
CAACCAACAAGATCATGAGA
AGG
 69.62583
61.96231
512





 1045
 1
AACCCTTCTCATGATCTTGT
TGG
 26.15799
41.67638
513





 1058
 1
ATCTTGTTGGTTGCTGTTCT
CGG
 83.86054
29.09087
514





 1073
 1
GTTCTCGGAAGTGATGAAAG
AGG
 79.35978
74.00854
515





 1099
-1
TGTTTGGTTAATTATTAAAT
AGG
 33.15963
19.05195
516





 1115
-1
ACTAATTCTAATTTGGTGTT
TGG
 59.84418
32.05943
517





 1122
-1
ATTGTATACTAATTCTAATT
TGG
 54.12193
21.41009
518





 1157
 1
ATAAGATCATCATCATAGTG
TGG
 66.94162
60.62696
519





 1168
 1
ATCATAGTGTGGAAGTGTAT
AGG
 73.55537
49.07951
520





 1213
-1
TTTTTAGTCTTGACTCTCAA
GGG
 77.37359
51.59533
521





 1214
-1
ATTTTTAGTCTTGACTCTCA
AGG
 74.23792
43.89766
522





 1259
 1
AAAGTTAATAATGATGAAAT
TGG
 35.52392
37.97787
523





 1274
 1
GAAATTGGTACCTTGAACAG
AGG
 81.08644
61.31573
524





 1305
-1
TTGAGGTTATCTTTCAACTT
GGG
 64.77667
37.47441
525





 1306
-1
ATTGAGGTTATCTTTCAACT
TGG
 77.67685
49.4408
526





 1322
-1
CAATTGACTTAAATCAATTG
AGG
 58.54721
51.56257
527





 1382
 1
AAGAAAATTACTAATTGCTC
AGG
 70.79317
49.81138
528





 1395
-1
GGGGTGCCACCTTTGGGCGG
TGG
 98.94197
45.7826
529





 1397
 1
TGCTCAGGTCCACCGCCCAA
AGG
 99.42523
59.45534
530





 1398
-1
ATTGGGGTGCCACCTTTGGG
CGG
 95.01333
60.80505
531





 1400
 1
TCAGGTCCACCGCCCAAAGG
TGG
 97.56412
60.82488
532





 1401
-1
GCTATTGGGGTGCCACCTTT
GGG
 95.35281
30.579
533





 1402
-1
TGCTATTGGGGTGCCACCTT
TGG
 97.59112
22.5998
534





 1414
-1
TTTCGAGACAACTGCTATTG
GGG
 95.02736
53.10779
535





 1415
-1
TTTTCGAGACAACTGCTATT
GGG
 91.01659
36.67599
536





 1416
-1
GTTTTCGAGACAACTGCTAT
TGG
 93.27798
46.45164
537





 1555
-1
GTTACTTTTGATAATTTGAT
AGG
 45.16312
42.37079
538





 7139
-1
AATGAATATTGGAGGCATCA
AGG
 69.38955
59.92139
539





 7147
-1
GATGATACAATGAATATTGG
AGG
 65.15451
59.16492
540





 7150
-1
GCAGATGATACAATGAATAT
TGG
 70.32188
47.43563
541





 7177
-1
AATGGTTATTATCATGCACA
TGG
 69.87898
60.70248
542





 7195
-1
ATTTTTGAGCTTACATCTAA
TGG
 68.8764
35.50075
543





 7220
-1
AGAGGTTTTAAGGAGGCATG
GGG
 90.60318
66.45911
544





 7221
-1
GAGAGGTTTTAAGGAGGCAT
GGG
 82.79088
50.05129
545





 7222
-1
GGAGAGGTTTTAAGGAGGCA
TGG
 80.93082
48.72577
546





 7227
-1
TGAATGGAGAGGTTTTAAGG
AGG
 74.09145
69.25707
547





 7230
-1
CATTGAATGGAGAGGTTTTA
AGG
 69.65457
16.77595
548





 7238
-1
AATGCCTACATTGAATGGAG
AGG
 85.66528
65.63677
549





 7243
-1
AAGGGAATGCCTACATTGAA
TGG
 89.92094
39.76854
550





 7245
 1
AAAACCTCTCCATTCAATGT
AGG
 79.28148
56.68625
551





 7261
-1
CACCATGATGTTTATTTTAA
GGG
 58.97317
 9.801739
552





 7262
-1
TCACCATGATGTTTATTTTA
AGG
 58.8467
15.41337
553





 7270
 1
TTCCCTTAAAATAAACATCA
TGG
 61.84936
57.29224
554





 7288
-1
GCATCGAAGACTCTGTTGAA
TGG
 91.56656
52.95186
555





 7312
-1
GCGCTCGGTCCAGTCATGTT
TGG
 94.43272
39.68016
556





 7314
 1
TTCGATGCTCCAAACATGAC
TGG
 86.8283
47.62248
557





 7327
-1
GGAATTGGTGAATTAGCGCT
CGG
 96.74799
68.37405
558





 7341
 1
AGCGCTAATTCACCAATTCC
TGG
 93.7153
36.16436
559





 7342
-1
CCTAAAAACAAACCAGGAAT
TGG
 86.34378
41.08083
560





 7348
-1
ATGCAGCCTAAAAACAAACC
AGG
 90.91529
63.74234
561





 7353
 1
CCAATTCCTGGTTTGTTTTT
AGG
 66.41673
 7.967407
562





 7417
 1
AAATGTAACATAATTTTATA
TGG
 30.24509
21.5658
563





 7418
 1
AATGTAACATAATTTTATAT
GGG
 36.43879
34.67268
564





 7461
-1
ACTTTTCAAATAAGATTTGA
TGG
 49.31759
24.4411
565





 7489
-1
AAAATATAATTTAAAAATAT
TGG
 23.50641
25.15222
566





 7523
 1
ATAAGTTTATTAATTACCAT
TGG
 43.96007
52.6669
567





 7528
-1
TGACAACAATGGTTATCCAA
TGG
 81.46885
63.06849
568





 7539
-1
TTATACATACTTGACAACAA
TGG
 72.70705
49.88993
569





 7569
-1
TCATTTAGTTCACAATGTAT
GGG
 69.87154
43.07873
570





 7570
-1
TTCATTTAGTTCACAATGTA
TGG
 64.11188
34.27846
571





 7620
-1
ATTGGTGGTGCATTTTCTGC
TGG
 75.70066
41.54012
572





 7635
-1
TGTGGTGGCACAGAAATTGG
TGG
 86.97385
62.37008
573





 7638
-1
ATGTGTGGTGGCACAGAAAT
TGG
 91.18051
35.67967
574





 7650
-1
CCTGTTATCGAAATGTGTGG
TGG
 86.4401
69.73002
575





 7653
-1
AAGCCTGTTATCGAAATGTG
TGG
 86.07817
69.79364
576





 7661
 1
CCACCACACATTTCGATAAC
AGG
 91.98911
34.09153
577





 7688
-1
ATGAATACCTATGGTTGATG
GGG
 79.66939
61.20548
578





 7689
-1
GATGAATACCTATGGTTGAT
GGG
 77.02024
47.22441
579





 7690
-1
AGATGAATACCTATGGTTGA
TGG
 76.43674
51.54312
580





 7692
 1
TTGCTCTCCCCATCAACCAT
AGG
 89.17718
57.68331
581





 7697
-1
CTAATGTAGATGAATACCTA
TGG
 79.03258
52.66036
582





 7726
 1
ATTAGATGCTTCACCAGAAG
AGG
 76.7559
48.05163
583





 7728
-1
TGTAGTTGCTTTTCCTCTTC
TGG
 70.77754
18.10598
584





 7745
 1
GAGGAAAAGCAACTACAAGA
AGG
 77.08372
61.08762
585





 7746
 1
AGGAAAAGCAACTACAAGAA
GGG
 59.40687
56.12144
586





 7780
-1
ATTATATTAAACGTATTATA
TGG
 58.83333
26.89437
587





 7828
 1
TGTGCATAGATAAGAAATAT
TGG
 49.90268
36.74205
588





 7853
 1
AATATATTATAATTCTTTAC
CGG
 49.5763
28.18052
589





 7857
 1
TATTATAATTCTTTACCGGA
TGG
 78.22362
52.20352
590





 7860
 1
TATAATTCTTTACCGGATGG
TGG
 93.78137
54.29303
591





 7861
-1
GCTATGATTGGTCCACCATC
CGG
 82.3879
55.49635
592





 7873
-1
ATTGTGTTAGTGGCTATGAT
TGG
 85.22929
56.76141
593





 7883
-1
AAAAGTAGCAATTGTGTTAG
TGG
 71.54968
45.76116
594





 7906
-1
TCCCTAGCATTGTTCGATCA
TGG
 95.58084
52.55436
595





 7915
 1
TTCCATGATCGAACAATGCT
AGG
 89.83435
51.35939
596





 7916
 1
TCCATGATCGAACAATGCTA
GGG
 83.34292
59.40933
597





 7929
-1
TAAAGTAACAATGCTAGGTG
TGG
 86.0951
63.10284
598





 7934
-1
GATGCTAAAGTAACAATGCT
AGG
 68.92833
59.04437
599





 7956
-1
ATGTTTTCTAATATGTGTGT
AGG
 35.74139
53.28168
600





 8037
-1
AATAAAAAACATGATAAGTT
CGG
 49.74918
45.14228
601





 8086
 1
AATAAAAATGATGTGATTAT
TGG
 45.03911
43.8586
602





 8114
-1
ATGTCTAATTCATTATAGAA
GGG
 64.65734
51.67938
603





 8115
-1
AATGTCTAATTCATTATAGA
AGG
 55.7369
45.68541
604





 8199
 1
CTAAAAAGTTTATTAGTTAA
TGG
 50.73953
27.333
605





 8223
-1
TAGCTTCGCCAAATTTGTGC
AGG
 88.30821
49.16688
606





 8226
 1
TTAGTTTACCTGCACAAATT
TGG
 74.90104
37.25004
607





 8245
 1
TTGGCGAAGCTAGAAACAAG
TGG
 82.9657
68.53364
608





 8261
-1
GCTTCTCTTGCCTTGTATAA
TGG
 81.45785
36.91329
609





 8262
 1
AAGTGGTGATCCATTATACA
AGG
 80.45179
62.09832
610





 8282
 1
AGGCAAGAGAAGCCCCATTA
AGG
 93.10259
42.00278
611





 8283
-1
CTATGCTTCACTCCTTAATG
GGG
 92.90881
51.33474
612





 8284
-1
TCTATGCTTCACTCCTTAAT
GGG
 80.41893
33.5345
613





 8285
-1
GTCTATGCTTCACTCCTTAA
TGG
 92.13485
27.46679
614





 8305
 1
AGTGAAGCATAGACCAGCCA
AGG
 93.2408
55.91368
615





 8307
-1
TTGGATGATGGGTCCTTGGC
TGG
 89.87415
37.38458
616





 8311
-1
TTGGTTGGATGATGGGTCCT
TGG
 90.64716
46.50603
617





 8318
-1
ACTAATCTTGGTTGGATGAT
GGG
 55.88848
43.22222
618





 8319
-1
CACTAATCTTGGTTGGATGA
TGG
 64.35474
40.68855
619





 8326
-1
TTTGGCCCACTAATCTTGGT
TGG
 63.95374
49.8337
620





 8330
-1
ATTGTTTGGCCCACTAATCT
TGG
 83.91578
42.92642
621





 8331
 1
CATCATCCAACCAAGATTAG
TGG
 45.46742
53.20986
622





 8332
 1
ATCATCCAACCAAGATTAGT
GGG
 44.6141
53.44581
623





 8344
-1
GGAAAGGTGATGTCATTGTT
TGG
 78.65278
38.65702
624





 8360
-1
AGCCATTTGGACATTAGGAA
AGG
 84.2141
58.69325
625





 8365
-1
GGTGGAGCCATTTGGACATT
AGG
 86.64479
40.00615
626





 8369
 1
CACCTTTCCTAATGTCCAAA
TGG
 75.0476
45.46945
627





 8373
-1
TGCAGATGGGTGGAGCCATT
TGG
 93.51908
44.95053
628





 8383
-1
TAAAAGCAGCTGCAGATGGG
TGG
 93.4923
62.38047
629





 8386
-1
CTTTAAAAGCAGCTGCAGAT
GGG
 88.26499
50.81653
630





 8387
-1
CCTTTAAAAGCAGCTGCAGA
TGG
 86.2835
54.0118
631





 8398
 1
CCATCTGCAGCTGCTTTTAA
AGG
 87.21073
15.05639
632





 8408
 1
CTGCTTTTAAAGGAGTTGCT
TGG
 88.7393
43.96243
633





 8409
 1
TGCTTTTAAAGGAGTTGCTT
GGG
 70.87059
39.59579
634





 8416
 1
AAAGGAGTTGCTTGGGTCCA
TGG
 92.13848
46.59847
635





 8422
-1
GGGAGCCAAAGGCAATTCCA
TGG
 82.72992
60.08041
636





 8428
 1
TGGGTCCATGGAATTGCCTT
TGG
 83.84223
36.75466
637





 8433
-1
TTTTGGTATAGGGGAGCCAA
AGG
 62.72308
58.65204
638





 8442
-1
ACAATATTGTTTTGGTATAG
GGG
 70.04203
44.96968
639





 8443
-1
GACAATATTGTTTTGGTATA
GGG
 65.06063
24.34171
640





 8444
-1
AGACAATATTGTTTTGGTAT
AGG
 60.62704
36.77509
641





 8450
-1
GATGGAAGACAATATTGTTT
TGG
 49.88722
31.0149
642





 8468
-1
ATCAATCTAAACACTTTTGA
TGG
 65.25066
22.9316
643





 8497
 1
TTGATGAACAAAACTAATTA
AGG
 60.26021
31.42456
644





 8506
 1
AAAACTAATTAAGGATATTA
AGG
 28.77328
23.99012
645





 8507
 1
AAACTAATTAAGGATATTAA
GGG
 47.82816
35.89387
646





 8508
 1
AACTAATTAAGGATATTAAG
GGG
 56.45894
52.91201
647





 8509
 1
ACTAATTAAGGATATTAAGG
GGG
 66.78309
63.26044
648





 8529
 1
GGGCTCATGAGATTTTTTAA
CGG
 72.44404
35.38053
649





 8573
-1
ATTCAGTAAATAATGATGCT
TGG
 74.0009
56.25971
650





 8598
-1
TTTTAAGAGCGCAAACTAAA
AGG
 69.75899
34.44909
651





 8648
 1
GTTTTGTTTAAAGATAATAG
CGG
 63.36248
63.28955
652





 8649
 1
TTTTGTTTAAAGATAATAGC
GGG
 66.03681
52.89056
653





 8681
 1
TCAAAATTTTATATTGTAAG
CGG
 40.99317
51.22546
654





 8758
-1
AGACAATAAGAGAGTTTATA
CGG
 63.10426
33.70903
655





 8777
 1
ACTCTCTTATTGTCTTAAAC
AGG
 82.59379
27.0699
656





 8778
 1
CTCTCTTATTGTCTTAAACA
GGG
 76.21161
46.02143
657





 8779
 1
TCTCTTATTGTCTTAAACAG
GGG
 81.69869
60.34407
658





 8801
-1
GATTTAATGATCAAGAATTT
AGG
 52.45697
36.47312
659





 8853
-1
GAATTTATTAAAATAGCATT
TGG
 58.39351
33.17128
660





 8873
 1
ATTTTAATAAATTCAAAACA
TGG
 42.10593
49.13089
661





 8876
 1
TTAATAAATTCAAAACATGG
CGG
 51.71372
68.38405
662





 8879
 1
ATAAATTCAAAACATGGCGG
TGG
 87.21197
46.77449
663





 8900
-1
CTCTTCTCATCTGGAACAAC
AGG
 83.95127
38.49164
664





 8909
-1
ACAAACATCCTCTTCTCATC
TGG
 82.47663
39.35798
665





 8912
 1
CTGTTGTTCCAGATGAGAAG
AGG
 82.81433
53.17806
666





 8925
 1
TGAGAAGAGGATGTTTGTAT
AGG
 75.94583
50.65718
667





 8934
 1
GATGTTTGTATAGGCATCAA
CGG
 83.23553
48.99018
668





 8935
 1
ATGTTTGTATAGGCATCAAC
GGG
 71.89291
50.59686
669





 8970
 1
AGTAAATTCACAATTTCTGC
AGG
 72.90705
51.93162
670





 8984
-1
GGGACTAATATCTTCTTGAG
TGG
 81.64895
66.64607
671





 9004
-1
AAAATAATAAGCATATATGT
GGG
 46.06348
54.81391
672





 9005
-1
CAAAATAATAAGCATATATG
TGG
 50.75457
48.01509
673





 9017
 1
CACATATATGCTTATTATTT
TGG
 49.76422
 8.576781
674





 9121
-1
TTTTTAATTAAAAGTAACAC
AGG
 60.1073
53.94147
675





 9187
-1
TTAATTTAGGAGTTATTTTG
GGG
 44.33331
53.49833
676





 9188
-1
ATTAATTTAGGAGTTATTTT
GGG
 41.75312
20.1865
677





 9189
-1
TATTAATTTAGGAGTTATTT
TGG
 46.05579
 9.863159
678





 9200
-1
AAGTTGGGCATTATTAATTT
AGG
 64.26833
29.09929
679





 9215
-1
ATCAGGGGTTTTATCAAGTT
GGG
 73.93607
33.45243
680





 9216
-1
TATCAGGGGTTTTATCAAGT
TGG
 84.29187
44.06854
681





 9230
-1
ATCACGTTTCTTATTATCAG
GGG
 80.66179
58.62752
682





 9231
-1
TATCACGTTTCTTATTATCA
GGG
 82.42224
47.4101
683





 9232
-1
GTATCACGTTTCTTATTATC
AGG
 58.04329
29.70134
684





 9261
-1
AAAATACATGTGAATGTTAG
TGG
 69.1364
51.00635
685





 9289
 1
TATTTTAGTTCAAACTCCAA
TGG
 60.62746
52.04271
686





 9294
-1
ATATGAACATTTGGATCCAT
TGG
 46.78738
41.8429
687





 9303
-1
TATCTATATATATGAACATT
TGG
 54.10978
35.78905
688





 9338
-1
GTGGAATATATAAACAGTAG
AGG
 80.1669
56.2241
689





 9357
-1
AATTCGTATAGAGATTAATG
TGG
 73.95175
62.50764
690





 9459
-1
GCGTGATGGCGATATTTCTT
GGG
 86.54713
37.70124
691





 9460
-1
TGCGTGATGGCGATATTTCT
TGG
 91.24965
32.52202
692





 9473
-1
ATTGGTGCAGAATTGCGTGA
TGG
 89.64882
66.39713
693





 9491
-1
CCTTGTAGTGGCTCTAATAT
TGG
 83.67391
26.74643
694





 9502
 1
CCAATATTAGAGCCACTACA
AGG
 88.94997
62.54443
695





 9503
-1
GCCATTGTTATTCCTTGTAG
TGG
 86.75924
41.11451
696





 9513
 1
GCCACTACAAGGAATAACAA
TGG
 78.65214
62.36806
697





 9519
 1
ACAAGGAATAACAATGGCCA
TGG
 84.70821
54.69464
698





 9520
 1
CAAGGAATAACAATGGCCAT
GGG
 88.76204
62.99032
699





 9525
-1
TGTGGAAGCCAAGTCTCCCA
TGG
 96.83523
60.94207
700





 9528
 1
AACAATGGCCATGGGAGACT
TGG
 91.04348
37.2658
701





 9543
-1
TAAATTGTGCAGTAGAGTTG
TGG
 74.79858
59.21973
702





 9574
 1
TTAACTCTTTTTTTGTGAGA
TGG
 67.00048
39.91071
703





 9617
 1
ATAATTTATTATTATTTGTC
AGG
 34.22417
35.90263
704





13019
 1
TGCTAGTACATGTCTATATA
AGG
 51.98406
29.87248
705





13060
-1
AGCAAAAGCCATTTTTACAC
AGG
 81.1356
53.00551
706





13063
 1
TATATATACCTGTGTAAAAA
TGG
 60.80392
35.0674
707





13103
 1
CGAAGTCTTGTTGATATTTC
AGG
 57.63384
20.64668
708





13152
-1
TATCTAGCTATTGTTCTTGC
GGG
 77.9103
33.48401
709





13153
-1
CTATCTAGCTATTGTTCTTG
CGG
 74.55985
43.94593
710





13180
-1
GCCAATGCATGTGGATGCTG
TGG
 92.72347
60.88652
711





13189
-1
AATTGATATGCCAATGCATG
TGG
 77.53646
64.53936
712





13190
 1
ACCACAGCATCCACATGCAT
TGG
 81.43998
59.13625
713





13224
-1
GAAGAAATGGGTTTGGAGAA
GGG
 49.22523
49.88879
714





13225
-1
TGAAGAAATGGGTTTGGAGA
AGG
 69.09616
48.87133
715





13231
-1
TGCACTTGAAGAAATGGGTT
TGG
 71.57783
32.7508
716





13236
-1
GGTTATGCACTTGAAGAAAT
GGG
 58.12192
38.87319
717





13237
-1
TGGTTATGCACTTGAAGAAA
TGG
 67.04056
33.35969
718





13257
-1
TAATTAATTTGATGGTTAGT
TGG
 56.6831
44.59873
719





13265
-1
ATGTATGGTAATTAATTTGA
TGG
 46.32665
36.88262
720





13280
-1
TTGGATATTGAAACTATGTA
TGG
 64.43349
55.56421
721





13299
-1
TTAATATGATATGGTTTATT
TGG
 51.05981
16.59851
722





13308
-1
TTCATAAAGTTAATATGATA
TGG
 45.86946
38.61687
723





13386
-1
ACCAATTGCGTAAACGTGTT
GGG
 92.64873
38.15694
724





13387
-1
GACCAATTGCGTAAACGTGT
TGG
 94.58325
51.95048
725





13396
 1
ACCCAACACGTTTACGCAAT
TGG
 94.35879
35.38154
726





13419
 1
TCAAGTGTCAATTTGTTTAG
AGG
 60.27782
38.1724
727





13444
-1
ATGATTGTATGGCGTGATGA
AGG
 93.06641
56.01275
728





13455
-1
TGAATGATACAATGATTGTA
TGG
 65.25489
43.79748
729





13524
 1
GCTGAGTTAAGATAACCTCC
TGG
 95.01444
53.02965
730





13528
-1
GGTAGTGAATGGCTTCCAGG
AGG
 97.82923
69.29733
731





13531
-1
GGGGGTAGTGAATGGCTTCC
AGG
 97.10675
35.56817
732





13539
-1
ATAATCCAGGGGGTAGTGAA
TGG
 91.39645
59.2292
733





13545
 1
GGAAGCCATTCACTACCCCC
TGG
 99.45732
52.97305
734





13549
-1
GATGATATTAATAATCCAGG
GGG
 87.72204
72.36028
735





13550
-1
TGATGATATTAATAATCCAG
GGG
 70.74045
64.58516
736





13551
-1
ATGATGATATTAATAATCCA
GGG
 56.34847
64.43657
737





13552
-1
GATGATGATATTAATAATCC
AGG
 64.68399
47.30268
738





13584
 1
TCTCTACGCAATATACATTC
TGG
 85.48205
37.55777
739





13598
-1
GATGAAGATAAGTTTTTCAA
AGG
 34.9946
46.22336
740





13625
-1
GTATTGGAGAACATTACTAA
TGG
 81.61714
54.192
741





13641
-1
TTATATAATGTTAGGTGTAT
TGG
 50.0441
37.07111
742





13649
-1
GGTTAATATTATATAATGTT
AGG
 46.14634
41.29752
743





13670
-1
TGTTAATTATTTGTAATTAA
TGG
 30.06382
19.30784
744





13699
-1
TTTATTATTTTATTTGAGGG
TGG
 56.87973
54.11921
745





13702
-1
CTATTTATTATTTTATTTGA
GGG
 22.86306
26.95378
746





13703
-1
ACTATTTATTATTTTATTTG
AGG
 24.37755
35.02855
747





13732
 1
ATAGTTATTATTATTACCTC
AGG
 69.1903
42.38884
748





13733
 1
TAGTTATTATTATTACCTCA
GGG
 66.22878
58.43041
749





13737
-1
ATTTTCTGTAAGAAACCCTG
AGG
 86.29961
70.70242
750





13754
 1
GGTTTCTTACAGAAAATTCT
TGG
 66.82242
29.73772
751





13776
 1
GAAATGAGAAAAGCTTGAAA
TGG
 53.70676
37.62262
752





13777
 1
AAATGAGAAAAGCTTGAAAT
GGG
 61.18077
43.36214
753





13791
-1
GTTTTTGGGAGTCAAGTATA
AGG
 79.38507
47.93209
754





13805
-1
AAGCGAGGAAAAGAGTTTTT
GGG
 66.05009
27.99152
755





13806
-1
GAAGCGAGGAAAAGAGTTTT
TGG
 65.56542
30.89956
756





13820
-1
GGCGCACTTTTGGAGAAGCG
AGG
 98.3174
63.90309
757





13830
-1
CACCAATATGGGCGCACTTT
TGG
 96.32144
22.47601
758





13839
 1
CTCCAAAAGTGCGCCCATAT
TGG
 94.31583
41.35959
759





13841
-1
AAAGTAAAGTCCACCAATAT
GGG
 68.75283
36.52054
760





13842
 1
CAAAAGTGCGCCCATATTGG
TGG
 97.30856
48.92306
761





13842
-1
GAAAGTAAAGTCCACCAATA
TGG
 84.33286
38.41171
762





13866
-1
TTTTCTTTTATTATGATTCA
GGG
 39.04863
43.80485
763





13867
-1
TTTTTCTTTTATTATGATTC
AGG
 29.8602
27.80478
764





15978
 1
GAAAAAATATATATATAGTA
AGG
 36.13766
41.8761
765





15995
 1
GTAAGGAAAGAGAGAGATTA
CGG
 54.88255
36.8303
766





15996
 1
TAAGGAAAGAGAGAGATTAC
GGG
 57.53794
51.49059
767





16000
 1
GAAAGAGAGAGATTACGGGT
CGG
 86.61929
64.70693
768





16001
 1
AAAGAGAGAGATTACGGGTC
GGG
 93.1411
48.83463
769





16013
 1
TACGGGTCGGGTATCCATGC
AGG
 98.86045
52.97598
770





16016
 1
GGGTCGGGTATCCATGCAGG
AGG
 97.58735
53.65399
771





16016
-1
TTGGACCCGCCCCTCCTGCA
TGG
 96.38923
49.42741
772





16017
 1
GGTCGGGTATCCATGCAGGA
GGG
 99.45455
58.97398
773





16018
 1
GTCGGGTATCCATGCAGGAG
GGG
 98.23654
50.30444
774





16021
 1
GGGTATCCATGCAGGAGGGG
CGG
 94.19216
43.31877
775





16022
 1
GGTATCCATGCAGGAGGGGC
GGG
 98.70541
48.06551
776





16035
-1
TATGGTTGCTATAAAGACTT
TGG
 72.61024
46.52942
777





16053
-1
CTGCACCAGATGCTCTACTA
TGG
 93.10997
49.44754
778





16059
 1
AGCAACCATAGTAGAGCATC
TGG
 93.28253
48.85983
779





16065
 1
CATAGTAGAGCATCTGGTGC
AGG
 93.11563
41.82045
780





16066
 1
ATAGTAGAGCATCTGGTGCA
GGG
 83.82199
65.30317
781





16072
 1
GAGCATCTGGTGCAGGGAGA
AGG
 95.16992
42.4774
782





16073
 1
AGCATCTGGTGCAGGGAGAA
GGG
 92.19717
45.18153
783





16074
 1
GCATCTGGTGCAGGGAGAAG
GGG
 81.91369
46.14286
784





16077
 1
TCTGGTGCAGGGAGAAGGGG
AGG
 92.48414
60.72469
785





16082
 1
TGCAGGGAGAAGGGGAGGTC
AGG
 93.10184
46.08437
786





16095
 1
GGAGGTCAGGCGAGAGAATA
TGG
 93.54221
39.68623
787





16099
 1
GTCAGGCGAGAGAATATGGT
TGG
 92.48836
56.48815
788





16119
 1
TGGCAATATTGATCCATGTT
TGG
 82.02049
32.56259
789





16120
 1
GGCAATATTGATCCATGTTT
GGG
 77.55255
27.19259
790





16121
 1
GCAATATTGATCCATGTTTG
GGG
 74.7566
63.12063
791





16121
-1
GCGCTGCCACTCCCCAAACA
TGG
 96.37777
52.90008
792





16126
 1
ATTGATCCATGTTTGGGGAG
TGG
 87.10662
48.37676
793





16143
-1
GCCGAGATCGTGTGTAATTA
TGG
 97.83461
28.59523
794





16153
 1
GCCATAATTACACACGATCT
CGG
 96.59886
55.77195
795





16165
-1
TGAGACACTCCATGGTAGAC
TGG
 91.79216
52.52207
796





16167
 1
CGATCTCGGCCAGTCTACCA
TGG
100
52.39825
797





16173
-1
GAAGTTGCTGAGACACTCCA
TGG
 95.9579
67.21232
798





16187
 1
TGGAGTGTCTCAGCAACTTC
AGG
 90.0358
32.39625
799





16188
 1
GGAGTGTCTCAGCAACTTCA
GGG
 93.36081
51.14577
800





16189
 1
GAGTGTCTCAGCAACTTCAG
GGG
 89.51798
72.6193
801





16200
 1
CAACTTCAGGGGTGATACCT
AGG
 97.10935
43.25481
802





16201
 1
AACTTCAGGGGTGATACCTA
GGG
 90.00002
51.96256
803





16206
-1
GCCTCTGACTTCATAGCCCT
AGG
 93.23889
55.05182
804





16216
 1
ACCTAGGGCTATGAAGTCAG
AGG
 96.23264
65.86427
805





16228
-1
CAAGTCCCTGGACTCTGTTG
TGG
 96.47011
52.94814
806





16233
 1
CAGAGGCCACAACAGAGTCC
AGG
 98.55521
53.21894
807





16234
 1
AGAGGCCACAACAGAGTCCA
GGG
 94.01286
58.98263
808





16240
-1
GGGTAAGAATTACAAGTCCC
TGG
 90.97415
50.38745
809





16260
-1
AGTTTAATAGAAGTAATAAT
GGG
 46.88021
37.37628
810





16261
-1
CAGTTTAATAGAAGTAATAA
TGG
 62.668
33.52716
811





16332
 1
AATATTATATATATTTATAT
TGG
 27.51617
28.97861
812





16339
 1
TATATATTTATATTGGATTT
TGG
 45.60089
18.21184
813





16340
 1
ATATATTTATATTGGATTTT
GGG
 41.67556
15.57417
814





16344
 1
ATTTATATTGGATTTTGGGA
TGG
 54.07712
37.86541
815





16345
 1
TTTATATTGGATTTTGGGAT
GGG
 52.6776
44.14789
816





16398
 1
ATCAAAGACTTGCTCAATAA
TGG
 65.21274
25.05297
817





16404
 1
GACTTGCTCAATAATGGATT
AGG
 79.79469
45.48502
818





16408
 1
TGCTCAATAATGGATTAGGC
TGG
 82.83171
48.09015
819





16415
 1
TAATGGATTAGGCTGGAATT
TGG
 87.54181
34.74462
820





16420
 1
GATTAGGCTGGAATTTGGTT
TGG
 73.47545
37.68495
821





16421
 1
ATTAGGCTGGAATTTGGTTT
GGG
 61.27861
39.60131
822





16447
-1
TCAAAGGCAACACAAGTGAT
AGG
 89.10229
58.40638
823





 1273
-1
GAAACTAAATCCTCTGTTCA
AGG
 90.64196
43.40519
826









Reference is made to Table 6 presenting a summary of the sequences within the scope of the current invention.









TABLE 6







Summary of sequences within the scope of the present invention












Sequence type
CsTHCAS
CsCBDAS
CsPT
CsOLS
CsAAE1





Genomic
SEQ ID NO: 1
SEQ ID NO: 4
SEQ ID NO: 7
SEQ ID NO: 10
SEQ ID NO: 13


sequence


Coding sequence
SEQ ID NO: 2
SEQ ID NO: 5
SEQ ID NO: 8
SEQ ID NO: 11
SEQ ID NO: 14


(CDS)


Amino acid
SEQ ID NO: 3
SEQ ID NO: 6
SEQ ID NO: 9
SEQ ID NO: 12
SEQ ID NO: 15


sequence


gRNA sequence
SEQ ID NO: 16-
SEQ ID NO: 168-304 &
SEQ ID NO: 305-
SEQ ID NO: 459-
SEQ ID NO: 510-823 &



SEQ ID NO: 167
SEQ ID NO: 824-825
SEQ ID NO: 458
SEQ ID NO: 509
SEQ ID NO: 826



(Table 1)
(Table 2)
(Table 3)
(Table 4)
(Table 5)









The above gRNA molecules have been cloned into suitable vectors and their sequence has been verified. In addition different Cas9 versions have been analyzed for optimal compatibility between the Cas9 protein activity and the gRNA molecule in the Cannabis plant.


The efficiency of the designed gRNA molecules have been validated by transiently transforming Cannabis tissue culture. A plasmid carrying a gRNA sequence together with the Cas9 gene has been transformed into Cannabis protoplasts. The protoplast cells have been grown for a short period of time and then were analyzed for existence of genome editing events. The positive constructs have been subjected to the herein established stable transformation protocol into Cannabis plant tissue for producing genome edited Cannabis plants in Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) genes.


Stage 3: Transforming Cannabis plants using Agrobacterium or biolistics (gene gun) methods. For Agrobacterium and bioloistics, a DNA plasmid carrying (Cas9+gene specific gRNA) can be used. A vector containing a selection marker, Cas9 gene and relevant gene specific gRNA's is constructed. For biolistics, Ribonucleoprotein (RNP) complexes carrying (Cas9 protein+gene specific gRNA) are used. RNP complexes are created by mixing the Cas9 protein with relevant gene specific gRNA's.


According to some embodiments of the present invention, transformation of various Cannabis tissues was performed using particle bombardment of:

    • DNA vectors
    • Ribonucleoprotein complex (RNP's)


According to further embodiments of the present invention, transformation of various Cannabis tissues was performed using Agrobacterium (Agrobacterium tumefaciens) by:

    • Regeneration-based transformation
    • Floral-dip transformation
    • Seedling transformation


Transformation efficiency by A. tumefaciens has been compared to the bombardment method by transient GUS transformation experiment. After transformation, GUS staining of the transformants has been performed.


Reference is now made to FIG. 3 photographically presenting GUS staining after transient transformation of the following Cannabis tissues (A) axillary buds (B) leaf (C) calli, and (D) cotyledons. FIG. 3 demonstrates that various Cannabis tissues have been successfully transiently transformed using biolistics system. Transformation has been performed into calli, leaves, axillary buds and cotyledons of Cannabis.


According to further embodiments of the present invention, additional transformation tools were used in Cannabis, including, but not limited to:

    • Protoplast PEG transformation
    • Extend RNP use
    • Directed editing screening using fluorescent tags
    • Electroporation


Stage 4: Regeneration in tissue-culture. When transforming DNA constructs into the plant, antibiotics is used for selection of positive transformed plants. An improved regeneration protocol was herein established for the Cannabis plant.


Reference is now made to FIG. 4A-C presenting regeneration of Cannabis tissue. In this figure, arrows indicate new meristem emergence.


Stage 5: Selection of positive transformants. Once regenerated plants appear in tissue culture, DNA is extracted from leaf sample of the transformed plant and PCR is performed using primers flanking the edited region. PCR products are then digested with enzymes recognizing the restriction site near the original gRNA sequence. If editing event occurred, the restriction site will be disrupted and the PCR product will not be cleaved. No editing event will result in a cleaved PCR product.


Reference is now made to FIG. 5 showing PCR detection of Cas9 DNA in shoots of transformed Cannabis plants. DNA extracted from shoots of plants transformed with Cas9 using biolistics. This figure shows that three weeks post transformation, Cas9 DNA was detected in shoots of transformed plants.


Screening for CRISPR/Cas9 gene editing events has been performed by at least one of the following analysis methods:

    • Restriction Fragment Length Polymorphism (RFLP)
    • Next Generation Sequencing (NGS)
    • PCR fragment analysis
    • Fluorescent-tag based screening
    • High resolution melting curve analysis (HRMA)


Reference is now made to FIG. 6 presenting results of in vitro analysis of CRISPR/Cas9 cleavage activity. FIG. 6A schematically shows the genomic area targeted for editing (PAM is marked in red) and amplified by the reverse and forward designed primers FIG. 6B photographically presents a gel showing successful digestion of the resulted PCR amplicon containing the gene specific gRNA sequence, by RNP complex containing Cas9. The analysis included the following steps:

    • 1) Amplicon was isolated from two exemplified Cannabis strains by primers flanking the sequence of the gene of interest targeted by the predesigned sgRNA.
    • 2) RNP complex was incubated with the isolated amplicon.
    • 3) The reaction mix was then loaded on agarose gel to evaluate Cas9 cleavage activity at the target site.


Stage 6: Selection of transformed Cannabis plants presenting reduced expression of at least one of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) as described above. It is within the scope that different gRNA promoters were tested in order to maximize editing efficiency.


Various embodiments have been presented. Each of these embodiments may of course include features from other embodiments presented, and embodiments not specifically described may include various features described herein.

Claims
  • 1. A Cannabis plant with reduced delta-9-tetrahydrocannabinol (THC) content, or reduced cannabidiol (CBD) content, or reduced THC and CBD content, wherein said plant comprises at least one mutated gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof, further wherein said mutation is introduced by targeted genome modification using at least one RNA-guided (gRNA) endonuclease selected from the group consisting of: a. gRNA targeted to CsTHCAS genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 16-167 and any combination thereof;b. gRNA targeted to CsCBDAS genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 168-304, 824-825 and any combination thereof;c. gRNA targeted to CsPT genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 305-458 and any combination thereof;d. gRNA targeted to CsOLS genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 459-509 and any combination thereof; ande. gRNA targeted to CsAAE1 genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 510-823, 826 and any combination thereof.
  • 2. (canceled)
  • 3. (canceled)
  • 4. (canceled)
  • 5. (canceled)
  • 6. (canceled)
  • 7. The Cannabis plant according to claim 1, wherein the genomic sequence encoding said at least one cannabinoid biosynthesis enzyme is selected from the group consisting of: CsTHCAS having a genomic nucleotide sequence as set forth in SEQ ID NO:1 or a functional variant thereof, CsCBDAS having a genomic nucleotide sequence as set forth in SEQ ID NO:4 or a functional variant thereof, CsPT having a genomic nucleotide sequence as set forth in SEQ ID NO:7 or a functional variant thereof, CsOLS having a genomic nucleotide sequence as set forth in SEQ ID NO:10 or a functional variant thereof and CsAAE1 having a genomic nucleotide sequence as set forth in SEQ ID NO:13 or a functional variant thereof.
  • 8. The Cannabis plant according to claim 7, wherein said functional variant has at least 75% sequence identity to the nucleotide sequence of said cannabinoid biosynthesis enzyme or a codon degenerate nucleotide sequence thereof.
  • 9. The Cannabis plant according to claim 1, wherein said plant has decreased expression levels of at least one of CsTHCAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:3 or a conservatively substituted amino acid sequence thereof, CsCBDAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:6 or a conservatively substituted amino acid sequence thereof, CsPT protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:9 or a conservatively substituted amino acid sequence thereof, CsOLS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:12 or a conservatively substituted amino acid sequence thereof, and CsAAE1 protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:15 or a conservatively substituted amino acid sequence thereof.
  • 10. The Cannabis plant according to claim 1, wherein said Cannabis plant has modulated expression of one or more of the cannabinoids, optionally cannabigerolic acid, cannabigerol, DELTA.9-tetrahydrocannabinolic acid, cannabidiolic acid, cannabichromenic acid, DELTA.9-tetrahydrocannabinol, cannabidiol, cannabichromene, THC, D9-THC, D8-THC, THCA, THCV, D8-THCV, D9-THCV, THCVA, CBD, CBDA, CBDV, CBDVA, CBC, CBCA, CBCV, CBCVA, CBG, CBGA, CBGV, CBGVA, CBN, CBNA, CBNV, CBNVA, CBND, CBNDA, CBNDV, CBNDVA, CBE, CBEA, CBEV, CBEVA, CBL, CBLA, CBLV, or CBLVA and cannabidiol.
  • 11. (canceled)
  • 12. (canceled)
  • 13. (canceled)
  • 14. (canceled)
  • 15. (canceled)
  • 16. (canceled)
  • 17. (canceled)
  • 18. The Cannabis plant of claim 1, wherein at least one of the following holds true: (a) said plant is homozygous for said at least one mutated gene; (b) said plant genotype is obtainable by deposit under accession number with NCIMB Aberdeen AB21 9YA, Scotland, UK; or (c) said Cannabis plant comprises a DNA encoding an antisense RNA or a siRNA effective to suppress expression of CsTHCAS, CsSP, CsCBDAS, CsPT, CsOLS, CsAAE1 and any combination thereof, the DNA operably linked to a heterologous promoter, wherein the Cannabis plant comprises reduced THC content, reduced CBD content, or decreased THC and CBD content relative to a Cannabis plant of a similar genotype that does not comprise the DNA.
  • 19. (canceled)
  • 20. (canceled)
  • 21. (canceled)
  • 22. (canceled)
  • 23. (canceled)
  • 24. (canceled)
  • 25. (canceled)
  • 26. (canceled)
  • 27. A plant part, plant cell or plant seed, tissue culture of regenerable cells, protoplasts or callus of a plant according to claim 1.
  • 28. (canceled)
  • 29. (canceled)
  • 30. (canceled)
  • 31. The Cannabis plant according to claim 1, wherein said Cannabis plant has at least one of the following characteristics: (a) a THC content of up to 30% by weight, particularly between about 0.1% to about 30% by weight, more particularly between about 0.3% to about 30%, even more particularly between about 0.3% to about 10% by weight; (b) a CBD content of up to 30% by weight, particularly between about 0.1% to about 30% by weight, more particularly between about 0.3% to about 30%, even more particularly between about 0.3% to about 10% by weight; (c) a THC and/or CBD content of not more than about 0.5% by weight; or (d) said plant is THC free.
  • 32. (canceled)
  • 33. (canceled)
  • 34. (canceled)
  • 35. (canceled)
  • 36. The Cannabis plant according to claim 1, wherein said plant has at least one targeted genome modification in at least one Cannabis gene encoding cannabinoid precursor synthesis enzyme selected from the group consisting of CsAAE, CsPT and CsOLS and said plant exhibits at least one of the following characteristics: (a) reduced expression of THC, CBD or both relative to a Cannabis plant of a similar genotype or genetic background lacking said targeted genome modification; (b) a THC and/or CBD content of up to 30% by weight, particularly between about 0.1% to about 30% by weight, more particularly between about 0.3% to about 30%, even more particularly between about 0.3% to about 10% by weight; or (c) a THC and/or CBD content of not more than about 0.5% by weight.
  • 37. (canceled)
  • 38. (canceled)
  • 39. (canceled)
  • 40. (canceled)
  • 41. The Cannabis plant according to claim 1, wherein said plant has at least one targeted genome modification in CsTHCAS and said plant exhibits reduced expression of THCA or THC, and elevated expression of CBD or CBDA relative to a Cannabis plant of a similar genotype or genetic background lacking said targeted genome modification, and wherein said plant has at least one of the following characteristics: (a) a THC and/or THCA content of up to 30% by weight, particularly between about 0.1% to about 30% by weight, more particularly between about 0.3% to about 30%, even more particularly between about 0.3% to about 10% by weight; or (b) a THC and/or THCA content of not more than about 0.5% by weight.
  • 42. (canceled)
  • 43. (canceled)
  • 44. The Cannabis plant according to claim 1, wherein said plant has at least one targeted genome modification in CsCBDAS and said plant exhibits reduced expression of CBDA or CBD, and elevated expression of THC or THCA relative to a Cannabis plant of a similar genotype or genetic background lacking said targeted genome modification, and wherein said plant has at least one of the following characteristics: (a) a CBD and/or CBDA content of up to 30% by weight, particularly between about 0.1% to about 30% by weight, more particularly between about 0.3% to about 30%, even more particularly between about 0.3% to about 10% by weight; or (b) a CBD and/or CBDA content of not more than about 0.5% by weight.
  • 45. (canceled)
  • 46. A Cannabis plant derived product or a derived medical composition from the plant of claim 1.
  • 47. The Cannabis plant derived product of claim 46, comprising at least one of the following characteristics: (a) a combined cannabidiolic acid and cannabidiol concentration of about 0.3% to about 30% by weight; (b) a combined delta-9-tetrahydrocannabinol and tetrahydrocannabinolic acid concentration of between about 0.3% to about 30% by weight; (c) Cannabis oil, Cannabis tincture, dried Cannabis flowers, and/or dried Cannabis leaves; (d) utilized as a medicament; or (e) formulated for inhalation, oral consumption, sublingual consumption, or topical consumption.
  • 48. (canceled)
  • 49. (canceled)
  • 50. (canceled)
  • 51. (canceled)
  • 52. (canceled)
  • 53. A method for producing a Cannabis plant according to claim 1, wherein said method comprises steps of introducing into the genome of a Cannabis plant or a cell thereof at least one targeted genome modification effective in decreasing expression of a at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of tetrahydrocannabinolic acid synthase (THCAS), cannabidiolic acid synthase (CBDAS), aromatic prenyltransferase (PT), olivetol synthase (OLS), acyl-activating enzyme 1 (AAE1) and any combination thereof, said introducing of at least one targeted genome modification comprises steps of introducing into said Cannabis plant or a cell thereof at least one RNA-guided (gRNA) endonuclease selected from the group consisting of: a. gRNA targeted to CsTHCAS genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 16-167 and any combination thereof;b. gRNA targeted to CsCBDAS genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 168-304, 824-825 and any combination thereof;c. gRNA targeted to CsPT genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 305-458 and any combination thereof;d. gRNA targeted to CsOLS genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 459-509 and any combination thereof; ande. gRNA targeted to CsAAE1 genomic sequence, said gRNA having a nucleotide sequence selected from the group consisting of SEQ ID NO: 510-823, 826 and any combination thereof.
  • 54. (canceled)
  • 55. (canceled)
  • 56. (canceled)
  • 57. (canceled)
  • 58. (canceled)
  • 59. (canceled)
  • 60. (canceled)
  • 61. (canceled)
  • 62. (canceled)
  • 63. (canceled)
  • 64. The method according to claim 53, wherein at least one of the following holds true: (a) the nucleotide sequence encoding said at least one cannabinoid biosynthesis enzyme is selected from the group consisting of: CsTHCAS having a genomic nucleotide sequence as set forth in SEQ ID NO:1 or a functional variant thereof, CsCBDAS having a genomic nucleotide sequence as set forth in SEQ ID NO:4 or a functional variant thereof, CsPT having a genomic nucleotide sequence as set forth in SEQ ID NO:7 or a functional variant thereof, CsOLS having a genomic nucleotide sequence as set forth in SEQ ID NO:10 or a functional variant thereof and CsAAE1 having a genomic nucleotide sequence as set forth in SEQ ID NO:13 or a functional variant thereof; or (b) said plant has decreased expression levels of at least one of CsTHCAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:3 or a conservatively substituted amino acid sequence thereof, CsCBDAS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:6 or a conservatively substituted amino acid sequence thereof, CsPT protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:9 or a conservatively substituted amino acid sequence thereof, CsOLS protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:12 or a conservatively substituted amino acid sequence thereof, and CsAAE1 protein having an amino acid sequence with at least 75% identity to the amino acid sequence as set forth in SEQ ID NO:15 or a conservatively substituted amino acid sequence thereof.
  • 65. (canceled)
  • 66. (canceled)
  • 67. (canceled)
  • 68. (canceled)
  • 69. (canceled)
  • 70. (canceled)
  • 71. (canceled)
  • 72. (canceled)
  • 73. (canceled)
  • 74. (canceled)
  • 75. (canceled)
  • 76. A plant part, plant cell or plant seed produced by the method according to claim 53.
  • 77. (canceled)
  • 78. A method for producing a medical Cannabis composition, the method comprising: a. obtaining the Cannabis plant of claim 1; andb. formulating a medical Cannabis composition from said plant.
  • 79. A method for manipulating a content of one or more cannabinoids in a Cannabis plant, the method comprising down-regulating activity of at least one Cannabis gene encoding a cannabinoid biosynthesis enzyme selected from the group consisting of tetrahydrocannabinolic acid synthase (THCAS) having a genomic nucleotide sequence with at least 75% sequence identity to a sequence as set forth in SEQ ID NO:1, cannabidiolic acid synthase (CBDAS) having a genomic nucleotide sequence with at least 75% sequence identity to a sequence as set forth in SEQ ID NO:4, aromatic prenyltransferase (PT) having a genomic nucleotide sequence with at least 75% sequence identity to a sequence as set forth in SEQ ID NO:7, olivetol synthase (OLS) having a genomic nucleotide sequence with at least 75% sequence identity to a sequence as set forth in SEQ ID NO:10, acyl-activating enzyme 1 (AAE1) having a genomic nucleotide sequence with at least 75% sequence identity to a sequence as set forth in SEQ ID NO:13 and any combination thereof, said down regulating comprising introducing a loss of function mutation into said nucleic acid sequence encoding said at least one cannabinoid biosynthesis enzyme using targeted genome modification.
  • 80. (canceled)
  • 81. (canceled)
  • 82. (canceled)
  • 83. An isolated nucleotide sequence having at least 75% sequence identity to a nucleotide sequence selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2 SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14 and SEQ ID NO:16-826; and/or an isolated amino acid sequence having at least 75% sequence identity to an amino acid sequence selected from the group consisting of SEQ ID NO:3, SEQ ID NO:6, SEQ ID NO:9, SEQ ID NO:12 and SEQ ID NO:15; and/or a vector, construct or expression system or cassette comprising nucleic acid sequence having at least 75% sequence identity to a nucleotide sequence selected from the group consisting of SEQ ID NO:1, SEQ ID NO:2, SEQ ID NO:4, SEQ ID NO:5, SEQ ID NO:7, SEQ ID NO:8, SEQ ID NO:10, SEQ ID NO:11, SEQ ID NO:13, SEQ ID NO:14 and SEQ ID NO:16-826.
  • 84. (canceled)
  • 85. (canceled)
  • 86. (canceled)
  • 87. (canceled)
  • 88. A method for down regulation of at least one Cannabis cannabinoid biosynthesis enzyme gene selected from the group consisting of Cannabis tetrahydrocannabinolic acid synthase (CsTHCAS), Cannabis cannabidiolic acid synthase (CsCBDAS), Cannabis aromatic prenyltransferase (CsPT), Cannabis olivetol synthase (CsOLS), Cannabis acyl-activating enzyme 1 (CsAAE1) and any combination thereof, which comprises utilizing the nucleotide sequence as set forth in at least one of SEQ ID NO:16-826 and any combination thereof said utilizing comprising introducing a loss of function mutation into said at least one gene encoding said at least one cannabinoid biosynthesis enzyme using targeted genome modification.
  • 89. (canceled)
  • 90. (canceled)
  • 91. (canceled)
  • 92. (canceled)
  • 93.-100. (canceled)
PCT Information
Filing Document Filing Date Country Kind
PCT/IL2019/050920 8/15/2019 WO 00
Provisional Applications (1)
Number Date Country
62719151 Aug 2018 US