Thermoelectric (“TE”) devices are highly desirable since they can directly convert between thermal and electrical energy. Electrical power can be supplied to such a device to either heat or cool adjoining reservoirs (e.g., Peltier effect) or alternatively, the flow of heat (e.g., waste heat from a factory or automobile) can be converted into usable electrical power (e.g., Seebeck effect). Often, the efficiency of a TE device is characterized by the dimensionless figure-of-merit ZT=S2GT/κ, constructed with the rationale that an efficient TE device should simultaneously: maximize the electrical conductance G so that current can flow without much Joule heating, minimize the thermal conductance K in order to maintain a temperature gradient across the device, and maximize the Seebeck coefficient S to ensure that the coupling between the electronic and thermal currents is as large as possible (Bell, L. E., Cooling, Heating, Generating Power, and Recovering Waste Heat with Thermoelectric Systems. Science 2008, 321, 1457-1461, hereinafter, Bell2008; DiSalvo, F. J., Thermoelectric Cooling and Power Generation. Science 1999, 285, 703-706, hereinafter DiSalvo1999). Generally, however, ZT is difficult to maximize because these properties are highly correlated with one another (Hochbaum, A. I., Chen, R., Delgado, R. D., Liang, W., Garnett, E. C., Najarian, M., Majumdar, A., and Yang, P., Enhanced thermoelectric performance of rough silicon nanowires, Nature 2008, 451, 163-167, hereinafer Hochbaum2008; Majumdar, A., MATERIALS SCIENCE: Enhanced: Thermoelectricity in Semiconductor Nanostructures. Science 2004, 303, 777-778, hereinafter Majumdar2004; Snyder, G. J.; Toberer, E. S. Complex thermoelectric materials. Nat Mater 2008, 7, 105-114, hereinafter Snyder 2008), an effect that can become more pronounced at the nanoscale where the number of degrees of freedom available is small.
If a TE material were found exhibiting ZT it would constitute a commercially viable solution for many heating and cooling problems at both the macro- and nano-scales, with no operational carbon footprint (DiSalvo1999). Currently, the best TE materials available in the laboratory exhibit ZT≈3, whereas for commercially available TE devices ZT≈1, owing to various packaging and fabrication challenges (Bell 2008; Harman, T. C., Taylor, P. J., Walsh, M. P., and LaForge, B. E., Quantum Dot Superlattice Thermoelectric Materials and Devices, Science 2002, 297, 2229-2232, hereinafter Harman 2002).
The inventors have discovered that enhanced thermoelectric effects can be found in the vicinity of a transmission node of a quantum tunneling device. Noteably, in some such devices, the transmission probability vanishes quadratically as a function of energy at such a transmission node. Even more significantly, the inventors have discovered that two-terminal Single-Molecule Junctions (“SMJ”s) can also exhibit higher-order “supernodes” in their transmission spectra.
In the vicinity of a 2nth order supernode the transmission probability T(E) for an electron of energy E to tunnel across a junction is given by:
T(E)∝(E−μnode)2n, (1)
where μnode is the energy of the node. The inventors have discovered that junctions possessing such supernodes exhibit a scalable order-dependent quantum-enhanced thermoelectric response. These results are valid for any device with transmission nodes arising from coherent electronic transport. Moveover, in addition to higher-order destructive interferences, the inventors have discovered that higher-order constructive interferences also strongly enhance thermoelectric effects, so that devices with transmission resonances arising from coherent electronic transport also exhibit this highly desirable behavior. The inventors have further devised example embodiments of devices that operate according to this advantageous behavior they discovered.
Hence, in one respect, various embodiments of the present invention provide a thermoelectric device, comprising: a first electrode; a second electrode; and an electrical transmission medium electrically connected to the first and second electrodes, wherein the electrical transmission medium comprises a quantum conductor that exhibits at least one transmission node or transmission resonance due to quantum interference.
In another respect, various embodiments of the present invention provide a thermoelectric power generator for generating a voltage difference between a first electrical contact and a second electrical contact in response to a temperature difference between a first heat-transfer surface and a second heat-transfer surface, the thermoelectric power generator comprising: at least one N-type thermoelectric structure comprising N-type organic molecules arranged in a self-assembled monolayer; and at least one P-type thermoelectric structure comprising P-type organic molecules arranged in a self-assembled monolayer, wherein the at least one N-type thermoelectric structure and the at least one P-type thermoelectric structure are electrically connected in series between the first and second electrical contacts and thermally connected in parallel between the first and second heat-transfer surfaces.
In still another respect, various embodiments of the present invention provide a Peltier cooler for transferring heat from a low-temperature surface to a high-temperature surface in response to an applied voltage between a first electrical contact and a second electrical contact, the Peltier cooler comprising: at least one N-type thermoelectric structure comprising N-type organic molecules arranged in a self-assembled monolayer; and at least one P-type thermoelectric structure comprising P-type organic molecules arranged in a self-assembled monolayer, wherein the at least one N-type thermoelectric structure and the at least one P-type thermoelectric structure are electrically connected in series between the first and second electrical contacts and thermally connected in parallel between the low-temperature and high-temperature surfaces.
In yet another respect, various embodiments of the present invention provide compound of the formula,
wherein n is 1-100; Z is a bond, —O—, —S—, —N(RZ)—, —C(O)—, —S(O)—, —S(O)2—, —C(RZ)2—, —C(RZ)═C(RZ)—, —C≡C—, wherein each RZ is independently hydrogen or C1-C6 alkyl; each m is independently 0, 1, 2, 3, or 4; each R is independently an electron-donating group, an electron-withdrawing group, or a group electrically similar to hydrogen; each L is independently a bond or a divalent linking group; each RE is independently a functional group capable of bonding to or associating with a metal surface.
In still another respect, various embodiments of the present invention provide an assembly comprising a first metal surface; a second metal surface; and one or more molecules bridging the first and second metal surfaces, wherein each molecule is of the formula
wherein n is 1-100; Z is a bond, —O—, —S—, —N(RZ)—, —C(O)—, —S(O)—, —S(O)2—, —C(RZ)z—, —C(RZ)═C(RZ)—, —C≡C—, wherein each RZ is independently hydrogen or C1-C6 alkyl; each m is independently 0, 1, 2, 3, or 4; each R is independently an electron-donating group, an electron-withdrawing group, or a group electrically similar to hydrogen; each L is independently a bond or a divalent linking group; each RE is independently a functional group capable of bonding to or associating with the first metal surface or second metal surface; and wherein for each molecule bridging the first metal surface and second metal surface, one RE group of the molecule is chemically bonded or associated with the first metal surface, and the second RE group of the molecule is chemically bonded or associated with the second metal surface.
These as well as other aspects, advantages, and alternatives will become apparent to those of ordinary skill in the art by reading the following detailed description, with reference where appropriate to the accompanying drawings. Further, it should be understood that this summary and other descriptions and figures provided herein are intended to illustrate the invention by way of example only and, as such, that numerous variations are possible.
The example embodiments disclosed herein are based, by way of example, on one or another form of Single-Molecule Junction (“SMJ”). As will be described, appropriately constructed molecules can give rise to supernodes as well as transmission resonances. Accordingly, analysis of such molecules serves to illustrate the physical principles underlying enhanced thermoelectric effects on the nanoscale, as well as to provide a framework for fabricating devices that utilize those principles. However, although the focus herein is on molecular junctions, it should be stressed that the results are applicable to any device with transmission nodes or transmission resonances arising from coherent electronic transport. More specifically, any quantum conductor may exhibit transmission nodes or resonances due to quantum interference. Without limitation, examples include semiconductor nanostructures, such as quantum dots and quantum wires, carbon nanotube junctions, and metal nanowires. It should be understood, therefore, that the example embodiments disclosed herein are not limited to molecular junctions.
As an example, ZT of a supernode-possessing polyphenyl ether (PPE)-based SMJ is shown as a function of repeated phenyl unit number n in
As an engineering rule-of-thumb, ZT has been widely used to characterize the bulk thermoelectric response of materials (Bell 2008; DiSalvo 1999; Snyder 2008). At the nanoscale, however, it is unclear the extent to which ZT is applicable, since bulk scaling relations for transport may break down due to quantum effects (Datta, S. In Electronic Transport in Mesoscopic Systems, Cambridge University Press: Cambridge, UK, 1995, pp 117-174, hereinafter Datta 1995). Moreover, ZT is a linear response metric, and cannot a priori predict nonequilibrium thermoelectric response.
We investigated the efficacy of ZT as a predictor of nonequilibrium device performance at the nanoscale by calculating the thermodynamic efficiency and power of an interacting quantum system using both nonequilibrium many-body theory, following the formalism of [Bergfield, J. P.; Stafford, C. A. Many-body theory of electronic transport in single-molecule heterojunctions. Phys. Rev. B 2009, 79, 245125, hereinafter Bergfield2009a, and incorporated in its entirety herein by reference], and Hückel theory. We discovered that in both theories, variations of ZT and thermodynamic efficiency are in good qualitative agreement. However, significant discrepancies between thermoelectric effects calculated within many-body and Hückel theory are found in the resonant tunneling regime, indicating the essential role of electron-electron interactions in nanoscale thermoelectricity. For a thermoelectric quantum tunneling device, we determined that the power output can be changed significantly by varying an external parameter, such as a gate voltage, and that this variation is not correlated with the variation of ZT. In the next subsection the theoretical foundations of enhanced thermoelectric effects on the nanoscale are presented in more detail.
Neglecting inelastic processes, which are strongly suppressed at room temperature in SMJs, the current flowing into lead 1 of a two-terminal junction may be written as follows (Bergfield, J. P.; Stafford, C. A. Thermoelectric Signatures of Coherent Transport in Single-Molecule Heterojunctions. Nano Letters 2009, 9, 3072-3076, hereinafter Bergfield2009b, and incorporated in its entirety herein by reference):
where v=0 (v=1) for the number (heat) current, fα (E) is the Fermi function for lead α with chemical potential μα and inverse temperature βα, and T(E) is the transmission probability for an electron of energy E to tunnel across the junction. This transmission function may be expressed in terms of the junction's Green's functions as (Datta1995):
T(E)=Tr{Γ1(E)G(E)Γ2(E)G†(E)}, (3)
where Γα(E) is the tunneling-width matrix for lead α and G(E) is the retarded Green's function of the SMJ.
In organic molecules, such as those considered herein, electron-phonon coupling is weak, allowing ZT to be expressed as follows:
where (Finch, C. M., Garca-Suárez, V. M., Lambert, C. J. Giant thermopower and figure of merit in single-molecule devices. Phys. Rev. B 2009, 79, 033405, hereinafter Finch2009):
Here f0 is the equilibrium Fermi function and κph=κ0Tph is the phonon's thermal conductance, where κ0=(π2/3)(kB2T/h) is the thermal conductance quantum (Rego, L. G. C., Kirczenow, G., Fractional exclusion statistics and the universal quantum of thermal conductance: A unifying approach. Phys. Rev. B 1999, 59, 13080-13086, hereinafter Rego1999), and Tph is the phonon transmission probability. The electronic thermal conductance is given by:
where T is the temperature.
The phonon thermal conductance of the junction is typically limited by the lead-molecule interface (Wang, Z., Carter, J. A., Lagutchev, A., Koh, Y. K., Seong, N., Cahill, D. G., and Dlott, D. D., Ultrafast Flash Thermal Conductance of Molecular Chains. Science 2007, 317, 787-790, hereinafter Wang2007). Since the Debye frequency in the metal lead is typically smaller than the lowest vibrational mode of a small organic molecule, the spectral overlap of phonon modes between the two is small, implying Tph=1, so that κph=κ0. Nonetheless, it is claimed that κph can reach values as large as 10−1° W/K for some SMJs (Wang 2007; Segal, D., Nitzan, A., and Hänggi, P., Thermal conductance through molecular wires. J. Chem. Phys. 2003, 119, 6840-6855, hereinafter Segal2003), so the correction to ZT due to phonon heat transport (cf., Eq 4) must be taken into account for quantitative estimates of device performance (Liu, Y.-S., Chen, Y.-R., and Chen, Y.-C., Thermoelectric Efficiency in Nanojunctions: A Comparison between Atomic Junctions and Molecular Junctions. ACS Nano 2009, 3, 3497-3504, hereinafter Liu2009). In the following, purely electronic transport is first considered; the effect of phonons is discussed subsequently.
Thermodynamically, a system's response can be characterized by the efficiency η with which heat can be converted into usable power P and the amount of power that can be generated. An example of thermoelectric device is illustrated schematically in
P=−I
1
(1)
−I
2
(1)
=I
1
(0)(μ1−μ2), (8)
where we mention that the power can be equivalently phrased in terms of heat or electrical currents. The efficiency η can be defined as the ratio of power output to input heat current:
where we have assumed that T1>T2. With these expressions for the power and efficiency, the performance of a quantum device can be completely quantified, both near and far from equilibrium.
As a first example, we calculated the non-linear thermoelectric response of a meta-connected Au-benzene-Au SMJ using many-body and Hückel theory, shown in
Additional transport channels (e.g., from σ-orbitals) or incoherent scattering may lift the transmission node. The effect on the thermoelectric response is small provided these processes are weak. The effect of ρ-orbitals in SMJs whose π-orbitals exhibit an ordinary node was investigated in [Ke, S.-H., Yang, W., and Baranger, H. U., Quantum Interference Controlled Molecular Electronics. Nano Letters 2008, 8, 3257, hereinafter Ke2008]. Because the σ transmission is exponentially suppressed (Ke2008; Tao, N. J., Electron transport in molecular junctions, Nature Nanotechnology 2006, 1, 173-181, hereinafter Tao2006) as the length of the molecule increases, the effect of the σ-orbitals should be quantitatively insignificant in the biphenyl and larger molecules considered below.
In the top panel of
The nonequilibrium thermodynamic response of a 1,3-benzene SMJ calculated using many-body theory is shown in
In the vicinity of a resonance, there are both quantitative and qualitative differences in the linear and non-linear thermodynamic response predicted by the two theories. By neglecting interactions, the Hückel theory fails to accurately predict both the degeneracy and position of electronic resonances. It also incorrectly determines the peak values of ZT, η and P in the vicinity of a resonance. As can be seen near either (HOMO or LUMO) resonance in
Of particular interest herein is the thermoelectric enhancement near nodes far away from any resonances. Although interactions ensure the invariance of transport quantities under a global voltage shift (i.e., gauge-invariance), near the particle-hole symmetric point the effect of interactions on the thermoelectric response should be small. In panels a-b of
More particularly, the calculations in
While the Hückel theory does not accurately characterize the thermoelectric response of a junction in the resonant-tunneling regime, it is sufficient for predicting η and ZT in the vicinity of the transmission node. Moreover, Hückel theory is evidently valid for analysis of the larger molecules presented below.
The transmission node in a meta-benzene junction can be understood in terms of destructive interference of electron waves traversing the ring at the Fermi energy (Cardamone2006). According to Luttinger's theorem (Luttinger, J. M. Fermi Surface and Some Simple Equilibrium Properties of a System of Interacting Fermions. Phys. Rev. 1960, 119, 1153-1163, hereinafter Luttinger1960), the Fermi volume is unaffected by the inclusion of electron-electron interactions. Consequently, in an aromatic ring such as benzene the Fermi wavevector kF=π/2d, where d is the inter-site distance, is conserved and is therefore sufficient to characterize quantum interference both with and without interactions near μ0 since Δφ=kFΔl, where Δφ is the relative phase between transport paths with length difference Δl.
This last result indicates that the energy of resonant levels will generally depend strongly on whether or not interactions are included. Since kF is protected, however, the transmission node across a single phenyl group is not so much a coincidence of energy levels as a wave phenomenon, meaning that interference in molecules composed of multiple aromatic rings in series can be understood in terms of the interference within each subunit rather than the energy spectrum of the entire molecule. We have found that such polycyclic molecules can exhibit higher-order supernodes, and that associated with a supernode is an order-dependent quantum enhancement of the junction's thermoelectric response.
The 3,3′-biphenyl junction, drawn schematically in the top panel of
In larger molecules composed of n meta-connected phenyl groups in series, we expect that the transmission nodes should combine and give rise to a 2nth order supernode. This is demonstrated in
More particularly, a polyphenyl ether (“PPE”) is shown schematically at the top of
The bottom panel of
where e is the magnitude of the electron's charge and T is the temperature. Using Eq 10 and Eq 6 with the transmission function of Eq 1 we determined that:
Setting n=6 in 11 gives Lmax=55.33 LWF, corresponding exactly to the result of the full calculation shown in the bottom panel of
The above discussion considered purely electronic transport. According to Eq 4, phonon heat transport may reduce ZT significantly (Liu2009), although it should be emphasized that the thermopower of the junction is unaffected provided the electron-phonon coupling is negligible.
In the vicinity of the quartic transmission node, ZT is significantly reduced even for small values of Tph. However, the large peaks of ZT found near the transmission resonances are largely insensitive to phonon heat transport due to the smaller ratio of κph/κel. Accordingly, the inventors have determined that practical supernode-based devices will need careful engineering of phonon transport. For example, the inclusion of a vacuum tunneling gap in series with the junction would effectively block phonon transport.
Higher-order quantum interference effects can arise from both destructive and constructive interference. As evidenced by
The transmission resonance exhibits fine structure due to electronic standing waves along the molecular chain (Kassubek, F., Stafford, C. A., and Grabert, H., Force, charge, and conductance of an ideal metallic nanowire. Phys. Rev. B 1999, 59, 7560-7574, hereinafter Kassubek1999). The interplay of the many closely spaced resonances gives rise to a dramatic enhancement of the thermopower in a regime of large electrical conductance, and hence a very large ZTel: 102. The inset of
The higher-order quantum interferences in the transmission spectrum of a nanoscale junction give rise to an order-dependent quantum-enhancement of the linear and non-linear thermoelectric response. The full nonequilibrium spectrum of thermodynamic efficiency qualitatively resembles the figure-of-merit ZT spectrum, suggesting that ZT encapsulates the salient physics related to efficiency even at the nanoscale. Beyond efficiency, another important quantity is the usable power produced by a device, variations of which are not likely to be reliably characterized by ZT alone at the nanoscale.
Thermoelectric devices based on individual SMJs or other quantum conductors exhibiting coherent electronic transport are ideally suited for local cooling in integrated nanoscale circuit architectures. Supernode-based devices have a low transmission probability and thus a large electrical impedance capable of withstanding voltage surges, while devices based on higher-order constructive interference are more robust with respect to phonon heat transport. Embodiments of such high-power macroscopic devices could be constructed by growing layers of densely packed molecules. For example, a self-assembled monolayer with a surface density (Zangmeister, C. D., Robey, S. W., van Zee, R. D., Yao, Y., Tour, J. M. Fermi Level Alignment and Electronic Levels in Molecular Wire Self-Assembled Monolayers on Au, The Journal of Physical Chemistry B 2004, 108, 16187-16193, hererinafter Zangmeister2004) of 4×1015 molecules/cm2 would give 352 kW/cm2 at peak efficiency for a meta-benzene film. Furthermore, the efficiency of PPE-based devices increases with ring number and may be limited only by the electronic coherence length and phonon heat transport.
The theoretical foundations discussed above provide a basis and serve as a guide for embodiments of practical, nanoscale thermoelectric devices that take advantage of the enhanced effects. Example embodiments of such devices are described below. In view of the applicability of the physical principles to a wide range of materials and configurations, it will be appreciated that the example embodiments discussed below should not be viewed as limiting with respect to employing high-order quantum interference in thermoeletric devices.
a. Generic Device Configuration for a Nanoscale Thermoelectric Device
In accordance with the physical principles discussed above, an example embodiment of a thermoelectric device will include a first electrode, a second electrode, and an electrical transmission medium electrically connected to the first and second electrodes. In particular, the electrical transmission medium will be a quantum conductor that exhibits at least one transmission node or transmission resonance due to quantum interference. Transmission nodes or transmission resonances arising from coherent electronic transport imbue the quantum characteristics described above into the electrical transmission medium, so that a junction formed by the connection of the first and second electrodes via the electrical transmission medium will exhibit enhanced thermoelectric response.
In further accordance with the example embodiment, the thermoelectric device may be configured to be operable as a thermoelectric power generator. More particularly, in response to a temperature difference between the first and second electrodes, the device will develop a voltage difference between the two electrodes. This configuration thus implements the Seebeck effect on the scale of junction. In practice, the first electrode will be configured to be in thermal contact with a heat source, and the second electrode will be configured to be in thermal contact with an ambient temperature reservoir. By usual convention a heat source is taken to be at a higher temperature than the ambient temperature reservoir (referred to herein simply as an “ambient”). Accordingly, the first electrode will be at a higher temperature than the second electrode.
In still further accordance with the example embodiment, the thermoelectric device may be configured to be operable as a Peltier cooler, having a low-temperature side and a high-temperature side. In this configuration, the thermoelectric device will transfer heat from the low-temperature side to the high temperature side in response to a voltage applied between the first and second electrodes, thereby cooling the low-temperature side. The Peltier cooler may be considered a power generator running in reverse, consuming electric energy to effect transfer of heat across the junction between the two electrodes.
The quantum conductor could be an organic molecule bonded to the first and second electrodes, thereby forming a SMJ between the two electrodes. More particularly, the organic molecule could include a plurality of meta-connected benzene rings. Such a molecule would exhibit enhanced thermoelectric response, in accordance with the physical principles discussed above. In practice, the electrical transmission medium could include a plurality of organic molecules bonded to the first and second electrodes. By way of example, the plurality of organic molecules could be arranged in a self-assembled monolayer (“SAM”).
When the device is operated as a power generator, a voltage is developed between the electrodes in response to a flow of heat from the hot reservoir to the ambient reservoir. Alternatively, when the device is operated as a Peltier cooler, heat is transferred from a cold reservoir to the hot reservoir in response to a voltage applied between the two electrodes. In either case, the enhanced thermoelectric response arising from the quantum interference effects of the SMJs advantageously results in enhanced efficiency and performance of the thermoelectric device.
b. Power Generator and Peltier Cooler
An alternative embodiment of a power generator is depicted in
In further accordance with the alternative embodiment, the first quantum conductor includes an N-type organic molecule and the second quantum conductor includes a P-type organic molecule. More particularly, the N-type organic molecule is bonded to the first and second electrodes and the P-type organic molecule is bonded to the second and third electrodes, as depicted in
As with the embodiment described in connection with
The alternative embodiment can be operated as a thermoelectric power generator by providing a temperature difference between the first and second sides of the device. More specifically, a voltage difference between the first and third electrodes will be developed in respond to a temperature difference between the first and second sides. In accordance with the alternative embodiment, the second side will be in thermal contact with a heat source and the first side will be in thermal contact with an ambient-temperature reservoir, such that the first and third electrodes are at a lower temperature than the second electrode. Then, a voltage difference between the first and third electrodes will be generated in response to a flow of heat across the junction between the first and second sides. The enhanced thermoelectric response arising from the quantum interference effects of the N-type and P-type SMJs advantageously results in enhanced efficiency and performance of the thermoelectric power generator.
The alternative embodiment of a thermoelectric power generator can be run in reverse as a Peltier cooler. Such an arrangement is shown in
c. Molecular structures
Compounds that may be used in the devices and assemblies described herein include compounds of formula (I),
wherein
n is 1-100;
Z is a bond, —O—, —S—, —N(RZ)—, —C(O)—, —S(O)—, —S(O)2—, —C(RZ)2—, —C(RZ)═C(RZ)—, —C≡C—, wherein each RZ is independently hydrogen or C1-C6 alkyl;
each m is independently 0, 1, 2, 3, or 4;
each R is independently an electron-donating group, an electron-withdrawing group, or a group electrically similar to hydrogen;
each L is independently a bond or a divalent linking group;
each RE is independently a functional group capable of bonding to or associating with a metal surface.
In certain embodiments, each R is independently an electron-donating group or an electron-withdrawing group.
In certain embodiments, the compounds of formula (I) are considered “N-type” as described above when at least one R group is an electron-donating substituent as is familiar to those skilled in the art. In certain embodiments, the compounds of formula (I) are “N-type” when each R group is an electron-donating substituent. An “electron-donating group” refers to a functional group that donates electrons to a neighboring atom more than a hydrogen atom would if it occupied the same position in a molecule. Examples of electron-donating substituents include, but are not limited to C1-C6 alkyl, —OR1, —N(R1)2, or —SR1.
In other embodiments, the compounds of formula (I) are considered “P-type” as described above when at least one R group is an electron-withdrawing substituent as is familiar to those skilled in the art. In other embodiments, the compounds of formula (I) are considered “P-type” when each R group is an electron-withdrawing substituent. An “electron-withdrawing group” refers to a functional group that draws electrons to itself more than a hydrogen atom would if it occupied the same position in a molecule. Examples of electron-withdrawing substituents include, but are not limited to halogen, cyano, nitro, trifluoromethyl, —C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, —S(O)2OR1.
In other embodiments, the compounds of formula (I) can be engineered to include substituents that are electrically similar but whose masses are different to modify the vibrational spectrum to limit the phonon thermal conductance through the junctions described herein (i.e., “phonon engineering”). For example, substitutions to one or several phenyl groups along the backbone can be made so that the masses of the various phenyl groups (taken to include the hydrogens groups and R groups) vary in an irregular fashion. The vibrational modes of the compounds of formula (I) then can tend to be localized, and the phonon thermal conductance of the compounds in the junctions can be suppressed. These substituents (i.e., R groups) can be selected to simultaneously alter the electrical properties of the molecule (e.g. R groups selected as n-type or p-type “doping”) and to suppress phonon thermal transport (e.g., electrically similar, but differing mass).
In one particular example, substituents for one or more of the hydrogens in the phenyl groups in any of the compounds described herein can be replaced with a substituent having an electronegativity similar to hydrogen (i.e., it is “electrically similar” to hydrogen).
The term “electrically similar” as used herein mean that the referenced entities have a Pauling electronegativity (χ) of about +/−0.10 of one another; such can be used in an aggregate sense, for example, the electronegativities of a set of substituents can be summed and compared to a second set of substituents to determine if the sets, each taken as a whole, are electrically similar to one another (i.e., the sums are about +/−0.10 of one another). For example, an entity that is “electrically similar” to hydrogen has χ≈2.20+/−0.10. In a particular example, replacing hydrogen for a methyl group (χ×2.30) leads to a small change in the thermoelectric response of a benzenedithiol junction indicating that a methyl group is electrically similar to hydrogen. Since the mass of the methyl group is about 15 times greater than that of hydrogen, such a substituent would significantly alter the vibrational spectrum of a molecule with a backbone of phenyl groups. Such substitutions may also be made in the linker groups (“L” as defined herein).
Where phenyl groups in the compounds herein have m=1-4, for example, to achieve n-type or p-type doping, then the overall electron-donating (or accepting) character of the substituents on each phenyl group can be electrically similar, but having the total masses of the substituents (i.e., the sum of the masses of any hydrogens and R groups on each phenyl) varying from one phenyl group to the next. The transmission of (quantum) sound waves can be reduced along the backbone of the molecule in that the mass per unit length should not be periodic, but should be random, or have one or several groups with mass differing greatly from the others.
A “linking group” as used herein means any divalent organic moiety capable of connecting an end group, (RE) as defined herein, to the core of the parent compound. Examples of linking groups include, but are not limited to, polymers, peptides, oligomers, dendrimers, where the end group and the core of the parent compound are each bonded to an available position within the linking group. Other examples of linking groups include groups of the formula, —(C0-C10 alkyl-J)0-2—, wherein each J is independently a bond, aryl, heteroaryl, C3-C8 cycloalkyl, or heterocyclyl; and no more than one methylene in each alkyl group is optionally and independently replaced by —O—, —S—, —N(R0)—, —C(H)═C(H)—, —C≡C—, —C(O)—, —S(O)—, —S(O)2—, —P(O)(OH)—, —OP(O)(OH)—, —P(O)(OH)O—, —N(R0)P(O)(OH)—, —P(O)(OH)N(R0)—, —OP(O)(OH)O—, —OP(O)(OH)N(R0)—, —N(R0)P(O)(OH)O—, —N(R0)P(O)(OH)N(R0)—, —C(O)O—, —C(O)N(R0)—, —OC(O)—, —N(R0)C(O)—, —S(O)O—, —OS(O)—, —S(O)N(R0)—, —N(R0)S(O)—, —S(O)2O—, —OS(O)2—, —S(O)2N(R0)—, —N(R0)S(O)2—, OC(O)O—, —OC(O)N(R0)—, —N(R0)C(O)O—, —N(R0)C(O)N(R0)—, —OS(O)O—, —OS(O)N(R0)—, —N(R0)S(O)O—, —N(R0)S(O)N(R0)—, —OS(O)2O—, —OS(O)2N(R0)—, —N(R0)S(O)2O—, or —N(R0)S(O)2N(R0)—, wherein each R0 is independently hydrogen or C1-C6
A “functional group capable of bonding to or associating with a metal surface” as used herein refers to chemical entities that include at least one chemical group capable of reacting with or coordinating to a metal layer surface. Examples of suitable functional groups for bonding or coordinating to metals include, but are not limited to, —NH2, —COOH, —OH, —SH, and chemical compounds containing the same.
In an embodiment of any of the preceding embodiments of formula (I), Z is bond, —O—, —S—, or —N(RZ)—. In certain embodiments, Z is bond or —O—. In certain other embodiments, Z is bond. In certain other embodiments, Z is —O—.
In an embodiment of any of the preceding embodiments of formula (I), each RE is independently halogen, —OH, —COOH, —CN, —NH2, —N±N+(Y−), —SH, —S2O3−Na+, —SAc,
—C(S)SH, —SeH, —SeSe R1, —PR12, —P(O)R12, —P(O)(O—)22−, —P(O)(OH)2, —PO42−, —N≡C, —C(H)═CH2, —C≡CH, —SiX3, —Si(OR1)3, wherein X is hydrogen or halogen; and Y is a halide, perchlorate, tetrafluoroborate, or hexafluorophosphate and wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl;
In an embodiment of any of the preceding embodiments of formula (I), each RE is independently halogen, —SH, —COOH, —P(O)(OH)2, —SiX3, —Si(OR1)3, —C≡N, or —N≡N+(Y−), wherein X is halogen; and Y is a halide, perchlorate, tetrafluoroborate, or hexafluorophosphate. In certain embodiments, each RE is independently halogen or —N≡N+(Y−). In certain other embodiments, each RE is independently —SiX3 or —Si(OR1)3, wherein X is halogen. In certain other embodiments, each RE is independently —SH, —COOH, or —P(O)(OH)2. In an embodiment of any of the preceding embodiments of formula (I), each RE is independently —SH, —S2O3−Na+, —SAc,
or —C(S)SH. In certain other embodiments, each RE is —SH.
In an embodiment of any of the preceding embodiments of formula (I), each L is independently of the formula, —(C0-C10 alkyl-J)0-2—, wherein each J is independently a bond, aryl, heteroaryl, C3-C8 cycloalkyl, or heterocyclyl; and no more than one methylene in each alkyl group is optionally and independently replaced by —O—, —S—, —N(R0)—, —C(H)═C(H)—, —C≡C—, —C(O)—, —S(O)—, —S(O)2—, —P(O)(OH)—, —OP(O)(OH)—, —P(O)(OH)O—, —N(R0)P(O)(OH)—, —P(O)(OH)N(R0)—, —OP(O)(OH)O—, —OP(O)(OH)N(R0)—, —N(R0)P(O)(OH)O—, —N(R0)P(O)(OH)N(R0)—, —C(O)O—, —C(O)N(R0)—, —OC(O)—, —N(R0)C(O)—, —S(O)O—, —OS(O)—, —S(O)N(R0)—, —N(R00)S(O)—, —S(O)2O—, —OS(O)2—, —S(O)2N(R0)—, —N(R0)S(O)2—, OC(O)O—, —OC(O)N(R0)—, —N(R0)C(O)O—, —N(R0)C(O)N(R0)—, —OS(O)O—, —OS(O)N(R0)—, —N(R0)S(O)O—, —N(R0)S(O)N(R0)—, —OS(O)2O—, —OS(O)2N(R0)—, —N(R0)S(O)2O—, or —N(R0)S(O)2N(R0)—, wherein each R0 is independently hydrogen or C1-C6 alkyl.
In certain embodiments, each L is independently —C0-C10 alkyl-J-C0-C10 alkyl-J-, wherein each J is independently a bond, aryl, heteroaryl, C3-C8 cycloalkyl, or heterocyclyl; and no more than one methylene in each alkyl group is optionally and independently replaced by —O—, —S—, —N(R0)—, —C(H)═C(H)—, —C≡C—, —C(O)—, —S(O)2—, —C(O)O—, —C(O)N(R0)—, —OC(O)—, —N(R0)C(O)—, —S(O)2N(R0)—, —N(R0)S(O)2—, OC(O)O—, —OC(O)N(R0)—, —N(R0)C(O)O—, —N(R0)C(O)N(R0)—, wherein each R0 is independently hydrogen or C1-C6 alkyl.
In certain other embodiments, each L is independently —C0-C10 alkyl-J-C0-C10 alkyl-J-, wherein each J is independently a bond or aryl and no more than one methylene in each alkyl group is optionally and independently replaced by —O—, —S—, —N(R0)—, —C(H)═C(H)—, —C≡C—, —C(O)—, —S(O)2—, —C(O)O—, —C(O)N(R0)—, —OC(O)—, —N(R0)C(O)—, —S(O)2N(R0)—, —N(R0)S(O)2—, OC(O)O—, —OC(O)N(R0)—, —N(R0)C(O)O—, —N(R0)C(O)N(R0)—, wherein each R0 is independently hydrogen or C1-C6 alkyl.
In yet other embodiments, each L is independently of the formula,
wherein each L2 is independently a bond, —CH2—, —O—, —S—, —N(R0)—, —C(H)═C(H)—, —C≡C—, —C(O)—, —S(O)2—, —C(O)O—, —C(O)N(R0)—, —OC(O)—, —N(R0)C(O)—, —S(O)2N(R0)—, —N(R0)S(O)2—, OC(O)O—, —OC(O)N(R0)—, —N(R0)C(O)O—, or —N(R0)C(O)N(R0)—.
In yet other embodiments, each L is independently of the formula,
wherein L2 is a bond or —O—.
In an embodiment of any of the preceding embodiments of formula (I), each R is independently halogen, cyano, nitro, C1-C6 alkyl, C1-C6 haloalkyl, —N(R1)2, —SR1, —C(O)OR1, —C(O)RD, —C(O)N(R1)2, —S(O)RB, —S(O)2R1, —S(O)N(R1)2, —S(O)2N(R1)2, —S(O)OR1, —S(O)2OR1, —OC(O)R1, —OC(O)OR1, —OC(O)N(R1)2, N(R1)C(O) R1, —N(R1)C(O)OR1, —N(R1)C(O)N(R1)2, C3-C8 cycloalkyl, heterocyclyl, aryl, or heteroaryl, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl.
In an embodiment of any of the preceding embodiments of formula (I), each R is independently halogen, cyano, nitro, C1-C4 alkyl, C1-C4 haloalkyl, —N(R1)2, —SR1, —C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, or —S(O)2OR1, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl.
In an embodiment of any of the preceding embodiments of formula (I), wherein each m is independently 0, 1, or 2; and each R is independently halogen, cyano, nitro, trifluoromethyl, C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, —S(O)2OR1.
In an embodiment of any of the preceding embodiments of formula (I), each m is independently 0, 1, or 2; and each R is independently C1-C6 alkyl, —OR1, —N(R1)2, or —SR1.
In an embodiment of any of the preceding embodiments of formula (I), at least one R group, when present, is electrically similar to hydrogen. In an embodiment of any of the preceding embodiments of formula (I), at least one R group, when present, is C1-6 alkyl (e.g., methyl or tert-butyl).
In an embodiment of any of the preceding embodiments of formula (I), at least one R group, when present is electrically similar to hydrogen, and the remaining R groups are each independently halogen, cyano, nitro, C1-C6 alkyl, C1-C6 haloalkyl, —N(R1)2, —SR1, C(O)OR1, —C(O)RD, —C(O)N(R1)2, —S(O)RB, —S(O)2R1, —S(O)N(R1)2, —S(O)2N(R1)2, —S(O)OR1, —S(O)2OR1, —OC(O)R1, —OC(O)OR1, —OC(O)N(R1)2, —N(R1)C(O)R1, —N(R1)C(O)OR1, —N(R1)C(O)N(R1)2, C3-C8 cycloalkyl, heterocyclyl, aryl, or heteroaryl, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl.
In an embodiment of any of the preceding embodiments of formula (I), at least one R group, when present is C1-6 alkyl (e.g., methyl or tert-butyl), and the remaining R groups are each independently halogen, cyano, nitro, C1-C6 alkyl, C1-C6 haloalkyl, —OR1, —N(R1)2, —SR1, —C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)RB, —S(O)2R1, —S(O)N(R1)2, —S(O)2N(R1)2, —S(O)OR1, —S(O)2OR1, —OC(O)R1, —OC(O)OR1, —OC(O)N(R1)2, —N(R1)C(O)R1, —N(R1)C(O)OR1, —N(R1)C(O)N(R1)2, C3-C8 cycloalkyl, heterocyclyl, aryl, or heteroaryl, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl.
In an embodiment of any of the preceding embodiments of formula (I), at least one R group, when present is electrically similar to hydrogen and the remaining R groups are each independently halogen, cyano, nitro, C1-C4 alkyl, C1-C4 haloalkyl, —OR1, —N(R1)2, —SR1, —C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, or —S(O)2OR1, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl.
In an embodiment of any of the preceding embodiments of formula (I), at least one R group, when present is C1-6 alkyl (e.g., methyl or tert-butyl), and the remaining R groups are each independently halogen, cyano, nitro, C1-C4 alkyl, C1-C4 haloalkyl, —OR1, —N(R1)2, —SR1, —C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, or —S(O)2OR1, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl.
In an embodiment of any of the preceding embodiments of formula (I), wherein each m is independently 0, 1, or 2; at least one R group, when present is electrically similar to hydrogen; and the remaining R groups are each independently halogen, cyano, nitro, trifluoromethyl, C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, —S(O)2OR1.
In an embodiment of any of the preceding embodiments of formula (I), wherein each m is independently 0, 1, or 2; at least one R group, when present is C1-6 alkyl (e.g., methyl or tert-butyl); and the remaining R groups are each independently halogen, cyano, nitro, trifluoromethyl, C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, —S(O)2OR1.
In an embodiment of any of the preceding embodiments of formula (I), each m is independently 0, 1, or 2; at least one R group, when present is electrically similar to hydrogen; and the remaining R groups are each independently C1-C6 alkyl, —OR1, —N(R1)2, or —SR1.
In an embodiment of any of the preceding embodiments of formula (I), each m is independently 0, 1, or 2; at least one R group, when present is C1-6 alkyl (e.g., methyl or tert-butyl); and the remaining R groups are each independently C1-C6 alkyl, —OR1, —N(R1)2, or —SR1.
In an embodiment of any of the preceding embodiments of formula (I), when n is 2 or greater, then the sets of R groups on each phenyl ring in the compound of formula (I) are not identical.
In an embodiment of any of the preceding embodiments of formula (I), when n is 2 or greater, then at least one of the sets of R groups on each phenyl ring in the compound of formula (I) is not identical to the sets of R groups on the remaining phenyl groups.
In an embodiment of any of the preceding embodiments of formula (I), when n is 3 or greater, then the sets of R groups on at least two phenyl rings in the compound of formula (I) are not identical.
In an embodiment of any of the preceding embodiments of formula (I), when n is 2 or greater, the sets of substituents (i.e., including hydrogens and R groups) on each phenyl group are electrically similar to one another, but the total mass of the substituents for at least one of the phenyl groups is not identical to the other phenyl groups.
In an embodiment of any of the preceding embodiments of formula (I), n is 1-90, or 1-80, or 1-70, or 1-60, or 1-50, or 1-40, or 1-30. In certain embodiments, n is 1-25, or 1-20, or 1-15, or 1-10. In certain other embodiments, n is 1-9, or 1-8, or 1-7, or 1-6, or 1-5, or 1-4, or 1-3, or 1-2.
In an embodiment of any of the preceding embodiments of formula (I), n is 2-100. In certain embodiments, n is 2-90, or 2-80, or 2-70, or 2-60, or 2-50, or 2-40, or 2-30. In certain embodiments, n is 2-25, or 2-20, or 2-15, or 2-10. In certain other embodiments, n is 2-9, or 2-8, or 2-7, or 2-6, or 2-5, or 2-4, or 2-3.
In yet other embodiments, n is 1. In yet other embodiments, n is 2. In yet other embodiments, n is 3. In yet other embodiments, n is 4. In yet other embodiments, n is 5. In yet other embodiments, n is 6. In yet other embodiments, n is 7. In yet other embodiments, n is 8. In yet other embodiments, n is 9. In yet other embodiments, n is 10.
In one particular embodiment of any of the preceding embodiments of formula (I), the compound is according to formula (II),
wherein
n is 1-100;
Z is a bond or —O—;
each m is independently 0 or 1;
each R is independently an electron-donating group, an electron-withdrawing group, or a group electrically similar to hydrogen; (e.g., each R is independently halogen, cyano, nitro, C1-C4 alkyl, C1-C4 haloalkyl, —OR1, —N(R1)2, —SR1, —C(O)OR1, —C(O)R1, —C(O)N(R1)2, —S(O)2R1, —S(O)2N(R1)2, or —S(O)2OR1, wherein each R1 is independently hydrogen, C1-C6 alkyl, or C1-C6 haloalkyl);
and
each L is independently a bond or a divalent linking group.
Preferred embodiments for N, Z, m, R, and L are as described above for compounds of formula (I).
Assemblies of any of the preceding compounds of formula (I), (II), and any embodiment thereof, between a first surface and a second surface may be prepared according to methods known in the art, wherein for each molecule bridging the first surface and second surface, one RE group of the molecule is chemically bonded or associated with the first surface, and the second RE group of the molecule is chemically bonded or associated with the second surface.
A self-assembled monolayer (SAM) may be prepared on the first surface according to methods known in the art, such as vapor deposition or deposition by immersion of the surface in a solution of the compound of formula (I) or (II). For example, see, Love et al., Chem. Rev. 2005, 105, 1103-1169, which is incorporated by reference in its entirety. The second layer may be deposited over the (SAM) to complete the assembly. For example, where the second layer is a metal layer, the second layer can be pressed mechanically into contact (e.g. a thin metal foil), deposited over the SAM by chemical vapor deposition, metal evaporation, or electroless deposition methods known to one skilled in the art. For example, compounds including thiol end groups (—SH) are known to associate with metal surfaces, such as silver, gold, and copper surfaces. Thiols can coat the surface at a concentration of about 0.1 mM to about 10 mM; or about 0.5 mM to about 10 mM; or about 1 mM to about 10 mM; or about 1 mM to about 5 mM; or about 1 mM concentration.
Examples of surfaces and suitable end groups for forming an assembly thereon include, but are not limited to:
In certain embodiments, each of the first and second surfaces is a metal surface. For example, each of the first and second surfaces is independently Al, Ag, Au, Ni, Ti, Pd, Pt, Ag0.90Ni0.10, AuAg, AuCu, AuPd, Cd, FePt, Ir, PdAg, Ru, stainless steel, or Zn. In certain embodiments, each of the first and second surfaces is a metal surface. For example, each of the first and second surfaces is independently Al, Ag, Au, Ni, Ti, Pd, Pt, Cd, Ir, Ru, or Zn. In other examples, each metal surface is a gold, silver, copper, platinum, palladium, aluminum, or titanium surface.
In one embodiment, each metal surface is a gold, silver, or copper surface and each RE is —SH. In another embodiment, each metal surface is a gold, silver, platinum, or copper surface and each RE is a bond.
In another embodiment of the assemblies herein, each RE is independently a bond, —SH, —COOH, —P(O)(OH)2, —Si(OR1)3-a(OH)a, or —C≡N wherein a is 1, 2, or 3.
For example, compounds described herein where RE is —SH may be prepared according to Scheme 1. A compound of generic formula (I) having an acetate protected thiol group linked through a linking group (L) to a —ZH group, each as defined herein, may be coupled under palladium-catalyzed conditions familiar to those skilled in the art to a compound of formula (2) having a halogen (X, e.g., bromo or iodo) and ZH group in a meta-relationship to one another. When Z is a vinylene or ethynylene group, the palladium-catalyzed conditions may comprise Heck or Sonogashira coupling conditions comprising a catalyst, such as, but not limited to, Ph(PPh3)4, Pd2(dibenzylideneacetone)3 [i.e., Pd2(dba)3], PdCl2, Pd(PPh3)2Cl2, or Pd(OAc)2, and a copper source, such as CuI, in the presence of a base, such as, cesium carbonate, potassium carbonate, N,N-diisopropylamine, tributylamine, or triethylamine. When Pd2(dba)3, PdCl2, Pd(PPh3)2Cl2, or Pd(OAc)2 is used, a phosphine such as triphenyphospine, tri(tert-butyl)phosphine, or tri(cyclohexyl)phosphine may also be used. Such couplings may give the compounds of general formula (3) where n may be controlled by the ratio of end group containing compound (1) to compound (2) present under the reaction conditions as is familiar to those skilled in the art. The second terminal linking group having an acetate protected thiol may be attached to the compound of formula (3) under similar palladium catalyzed conditions as the preceding step using a compound of the formula X-L-SAc to generate compound (4). Finally, the thioacetate groups may be deprotected to yield the free thiol groups of compound (5), for example, by hydrolysis with ammonium hydroxide, propylamine, 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU), hydrochloric acid sodium hydroxide, sodium methoxide, potassium hydroxide, or potassium carbonate.
Where Z is —O— or —S— in preparation of compound (3) Ullmann-type copper-catalyzed reaction conditions may be used. For example, compounds (1) and (2) may be coupled in the presence of CuI, a chelating bidentate base, such as 2,2′-bipyridine, 1,10-phenanthroline or a substituted 2,2′-bipyridine or 1,10-phenanthroline (e.g., neocuproine, 3,4,7,8-tetramethyl-1,10-phenanthroline), and a base such as potassium phosphate, cesium carbonate, potassium carbonate, or sodium t-butoxide. Such couplings may give the compounds of general formula (3) where n may be controlled by the ratio of end group containing compound (1) to compound (2) present under the reaction conditions as is familiar to those skilled in the art. The second terminal linking group having an acetate protected thiol may be attached to the compound of formula (3) under similar palladium catalyzed conditions as the preceding step using a compound of the formula X-L-SAc to generate compound (4), and the thioacetate groups may be deprotected to yield the free thiol groups of compound (5).
Where Z is —O— or —N(RZ)—, in preparation of compound (3), palladium-catalyzed reaction conditions may be used. For example, compounds (1) and (2) may be coupled in the presence of Ph(PPh3)4, Pd2(dba)3, PdCl2, Pd(PPh3)2Cl2, or Pd(OAc)2, a base such as potassium phosphate, sodium t-butoxide, cesium carbonate, or potassium carbonate, and a bulky phosphine ligand, such as, but not limited to, 2-Dicyclohexylphosphino-2′,6′-dimethoxybiphenyl,—2-Dicyclohexylphosphino-2′,4′,6′-triisopropylbiphenyl, 2-Dicyclohexylphosphino-2′-methylbiphenyl,—2-Di-tert-butylphosphino-2′,4′,6′-triisopropylbiphenyl,—2-Di-tert-butylphosphino-3,4,5,6-tetramethyl-2′,4′,6′-triisopropyl-1,1′-biphenyl,—2-Di-tert-butylphosphino-2′-methylbiphenyl, 2-Di-tert-butylphosphino-2′-(N,N-dimethylamino)biphenyl, 2-Dicyclohexylphosphino-2′-(N,N-dimethylamino)biphenyl, 2-(Dicyclohexylphosphino)biphenyl, —2-(Di-tert-butylphosphino)biphenyl, 2-Dicyclohexylphosphino-2′,6′-diisopropoxybiphenyl—, 2-Diphenylphosphino-2′-(N,N-dimethylamino)biphenyl, and sodium 2-dicyclohexylphosphino-2′,6′-dimethoxybiphenyl-3′-sulfonate. See, for example, U.S. Pat. Nos. 6,762,329; 6,166,226; 6,235,871; and 6,307,087, each of which are hereby incorporated by reference. The second terminal linking group to an acetate protected thiol may be attached to the compound of formula (3) under similar palladium catalyzed conditions as the preceding step using a compound of the formula X-L-SAc to generate compound (4). Finally, the thioacetate groups may be deprotected to yield the free thiol groups of compound (5).
In the preceding methods, compound (3) may be formed a polydisperse mixture of compounds having n values as defined herein. Such may be separated according to methods known in the art, such as column chromatography or high-performance liquid chromatography using a size-exclusion column either before or after preparation of compounds (3), (4) and/or (5).
In another example, compounds described herein where RE is —SH and Z is a bond (e.g., m-polyphenylenes) may be prepared according to Scheme 2. A compound of generic formula (6) having an acetate protected thiol group linked to a halogen, where L is a linking group as defined herein may be coupled under either palladium-catalyzed conditions familiar to those skilled in the art with a compound of formula (7) having a halogen (X e.g., bromo or iodo) and a Y group in a meta-relationship to one another. Under palladium catalyzed conditions (e.g., Suzuki coupling conditions), Y is a boronic acid (—B(OH2)) and the reaction is performed in the presence of a palladium catalyst such as Ph(PPh3)4, Pd2(dba)3, or Pd(OAc)2, and a base such as potassium carbonate, potassium phosphate, or potassium t-butoxide. When Pd2(dba)3 or Pd(OAc)2 is used, a phosphine such as triphenyphospine, tri(tert-butyl)phosphine, di(t-butyl)methylphosphine, or tri(cyclohexyl)phosphine may be used. Such couplings may give the compounds of general formula (8) where n may be controlled by the ratio of end group containing compound (6) to compound (7) present under the reaction conditions as is familiar to those skilled in the art.
The second terminal linking group having an acetate protected thiol may be attached to the compound of formula (8) under similar palladium catalyzed conditions as the preceding step using a compound of the formula (HO)2B-L-SAc to generate compound (9). Finally, the thioacetate groups may be deprotected to yield the free thiol groups of compound (10). Compound (8) may be formed as a polydisperse mixture of compounds having n values as defined herein. Such may be separated according to methods known in the art, such as column chromatography or high-performance liquid chromatography using a size-exclusion column either before or after preparation of compounds (8), (9) and/or (10).
Alternatively, compounds described herein where RE is —SH may be prepared according to the iterative process of Scheme 3. Therein, compound (1) is coupled to compound (11) under the palladium- or copper-catalyzed conditions described above for Scheme 1 (“step a”) to yield compound (12). Compound (11) comprises a halogen (X) and a protected “ZH” group (—Z-Prot) in a meta-relationship. Examples of suitable protecting groups include, but are not limited to, trimethylsilyl, t-butyldimethylsilyl, acetyl, and the like. The protecting group is removed in “step (b)” from compound (12), under conditions known to those skilled in the art (e.g., for trimethylsilyl groups, treatment of compound (12) with tetrabutylammonium fluoride) to yield the free —ZH functional group of compound (13). Steps (a) and (b) may be repeated iteratively to yield compound (14) having the desired value of n. Finally, compound (14) may be coupled to a compound of the formula X-L-SAc, to yield compound (4), which may be deprotected to yield compound (5), each as described above.
Similarly, compounds described herein where RE is —SH and Z is a bond may be prepared according to the iterative process of Scheme 4. Therein, compound (6) is coupled to compound (15) under the Suzuki coupling conditions described above for Scheme 2 (“step c”) to yield compound (16). Compound (15) comprises a boronic acid and a “protected” halogen group in the form of a diethyltriazene group in a meta-relationship. Such diethyltriazene groups may be prepared from the corresponding amine by treatment with NaNO2 and HCl to generate a diazonium which is treated with diethylamine and potassium carbonate. The protecting group is removed in “step (d)” from compound (16), under conditions known to those skilled in the art (e.g., heating in the presence of methyl iodide) to yield the iodo-functionalized compound (17). Steps (c) and (d) may be repeated iteratively to yield compound (18) having the desired value of n. Finally, compound (18) may be coupled to a compound of the formula (HO)2B-L-SAc, to yield compound (9), which may be deprotected to yield compound (10), each as described above.
The preceding methods may be readily modified by one skilled in the art to generate the compounds of formulas (I) and (II) described herein having RE groups other than thiols. For example, suitably protected amine groups may replace the -Sac groups in the above methods for generating compounds where RE is amino
Terms used herein may be preceded and/or followed by a single dash, “-”, or a double dash, “=”, to indicate the bond order of the bond between the named substituent and its parent moiety; a single dash indicates a single bond and a double dash indicates a double bond. In the absence of a single or double dash it is understood that a single bond is formed between the substituent and its parent moiety; further, substituents are intended to be read “left to right” unless a dash indicates otherwise. For example, C1-C6alkoxycarbonyloxy and —OC(O)C1-C6alkyl indicate the same functionality; similarly arylalkyl and -alkylaryl indicate the same functionality.
Further, certain monovalent terms herein, such as alkyl, aryl, heteroaryl, cycloalkyl, and heterocyclyl are also used as divalent terms, for example within —C0-C10 alkyl-J-. In such cases, it is understood that one skilled in the art would interpret such use as a divalent radical bridging two parent moities.
The term “alkyl” as used herein, means a straight or branched chain hydrocarbon containing from 1 to 10 carbon atoms, unless otherwise specified. Representative examples of alkyl include, but are not limited to, methyl, ethyl, n-propyl, iso-propyl, n-butyl, sec-butyl, iso-butyl, tert-butyl, n-pentyl, isopentyl, neopentyl, n-hexyl, 3-methylhexyl, 2,2-dimethylpentyl, 2,3-dimethylpentyl, n-heptyl, n-octyl, n-nonyl, and n-decyl. When an “alkyl” group is a linking group between two other moieties, then it may also be a straight or branched chain; examples include, but are not limited to —CH2—, —CH2CH2−, —CH2CH2CHC(CH3)—, —CH2CH(CH2CH3)CH2—.
The term “aryl,” as used herein, means a phenyl (i.e., monocyclic aryl), or a bicyclic ring system containing at least one phenyl ring or an aromatic bicyclic ring containing only carbon atoms in the aromatic bicyclic ring system. The bicyclic aryl can be azulenyl, naphthyl, or a phenyl fused to a monocyclic cycloalkyl, a monocyclic cycloalkenyl, or a monocyclic heterocyclyl. The bicyclic aryl is attached to the parent molecular moiety through any carbon atom contained within the phenyl portion of the bicyclic system, or any carbon atom with the napthyl or azulenyl ring. The fused monocyclic cycloalkyl or monocyclic heterocyclyl portions of the bicyclic aryl are optionally substituted with one or two oxo and/or thia groups. Representative examples of the bicyclic aryls include, but are not limited to, azulenyl, naphthyl, dihydroinden-1-yl, dihydroinden-2-yl, dihydroinden-3-yl, dihydroinden-4-yl, 2,3-dihydroindol-4-yl, 2,3-dihydroindol-5-yl, 2,3-dihydroindol-6-yl, 2,3-dihydroindol-7-yl, inden-1-yl, inden-2-yl, inden-3-yl, inden-4-yl, dihydronaphthalen-2-yl, dihydronaphthalen-3-yl, dihydronaphthalen-4-yl, dihydronaphthalen-1-yl, 5,6,7,8-tetrahydronaphthalen-1-yl, 5,6,7,8-tetrahydronaphthalen-2-yl, 2,3-dihydrobenzofuran-4-yl, 2,3-dihydrobenzofuran-5-yl, 2,3-dihydrobenzofuran-6-yl, 2,3-dihydrobenzofuran-7-yl, benzo[d][1,3]dioxol-4-yl, benzo[d][1,3]dioxol-5-yl, 2H-chromen-2-on-5-yl, 2H-chromen-2-on-6-yl, 2H-chromen-2-on-7-yl, 2H-chromen-2-on-8-yl, isoindoline-1,3-dion-4-yl, isoindoline-1,3-dion-5-yl, inden-1-on-4-yl, inden-1-on-5-yl, inden-1-on-6-yl, inden-1-on-7-yl, 2,3-dihydrobenzo[b][1,4]dioxan-5-yl, 2,3-dihydrobenzo[b][1,4]dioxan-6-yl, 2H-benzo[b][1,4]oxazin3(4H)-on-5-yl, 2H-benzo[b][1,4]oxazin3(4H)-on-6-yl, 2H-benzo[b][1,4]oxazin3(4H)-on-7-yl, 2H-benzo[b][1,4]oxazin3(4H)-on-8-yl, benzo[d]oxazin-2(3H)-on-5-yl, benzo[d]oxazin-2(3H)-on-6-yl, benzo[d]oxazin-2(3H)-on-7-yl, benzo[d]oxazin-2(3H)-on-8-yl, quinazolin-4(3H)-on-5-yl, quinazolin-4(3H)-on-6-yl, quinazolin-4(3H)-on-7-yl, quinazolin-4(3H)-on-8-yl, quinoxalin-2(1H)-on-5-yl, quinoxalin-2(1H)-on-6-yl, quinoxalin-2(1H)-on-7-yl, quinoxalin-2(1H)-on-8-yl, benzo[d]thiazol-2(3H)-on-4-yl, benzo[d]thiazol-2(3H)-on-5-yl, benzo[d]thiazol-2(3H)-on-6-yl, and, benzo[d]thiazol-2(3H)-on-7-yl. In certain embodiments, the bicyclic aryl is (i) naphthyl or (ii) a phenyl ring fused to either a 5 or 6 membered monocyclic cycloalkyl, a 5 or 6 membered monocyclic cycloalkenyl, or a 5 or 6 membered monocyclic heterocyclyl, wherein the fused cycloalkyl, cycloalkenyl, and heterocyclyl groups are optionally substituted with one or two groups which are independently oxo or thia.
The terms “cyano” and “nitrile” as used herein, mean a —CN group.
The term “cycloalkyl” as used herein, means a monocyclic or a bicyclic cycloalkyl ring system. Monocyclic ring systems are cyclic hydrocarbon groups containing from 3 to 8 carbon atoms, where such groups can be saturated or unsaturated, but not aromatic. In certain embodiments, cycloalkyl groups are fully saturated. Examples of monocyclic cycloalkyls include cyclopropyl, cyclobutyl, cyclopentyl, cyclopentenyl, cyclohexyl, cyclohexenyl, cycloheptyl, and cyclooctyl. Bicyclic cycloalkyl ring systems are bridged monocyclic rings or fused bicyclic rings. Bridged monocyclic rings contain a monocyclic cycloalkyl ring where two non-adjacent carbon atoms of the monocyclic ring are linked by an alkylene bridge of between one and three additional carbon atoms (i.e., a bridging group of the form —(CH2)w—, where w is 1, 2, or 3). Representative examples of bicyclic ring systems include, but are not limited to, bicyclo[3.1.1]heptane, bicyclo[2.2.1]heptane, bicyclo[2.2.2]octane, bicyclo[3.2.2]nonane, bicyclo[3.3.1]nonane, and bicyclo[4.2.1]nonane. Fused bicyclic cycloalkyl ring systems contain a monocyclic cycloalkyl ring fused to either a phenyl, a monocyclic cycloalkyl, a monocyclic cycloalkenyl, a monocyclic heterocyclyl, or a monocyclic heteroaryl. The bridged or fused bicyclic cycloalkyl is attached to the parent molecular moiety through any carbon atom contained within the monocyclic cycloalkyl ring. Cycloalkyl groups are optionally substituted with one or two groups which are independently oxo or thia. In certain embodiments, the fused bicyclic cycloalkyl is a 5 or 6 membered monocyclic cycloalkyl ring fused to either a phenyl ring, a 5 or 6 membered monocyclic cycloalkyl, a 5 or 6 membered monocyclic cycloalkenyl, a 5 or 6 membered monocyclic heterocyclyl, or a 5 or 6 membered monocyclic heteroaryl, wherein the fused bicyclic cycloalkyl is optionally substituted by one or two groups which are independently oxo or thia.
“Cycloalkenyl” as used herein refers to a monocyclic or a bicyclic cycloalkenyl ring system. Monocyclic ring systems are cyclic hydrocarbon groups containing from 3 to 8 carbon atoms, where such groups are unsaturated (i.e., containing at least one annular carbon-carbon double bond), but not aromatic. Examples of monocyclic ring systems include cyclopentenyl and cyclohexenyl. Bicyclic cycloalkenyl rings are bridged monocyclic rings or a fused bicyclic rings. Bridged monocyclic rings contain a monocyclic cycloalkenyl ring where two non-adjacent carbon atoms of the monocyclic ring are linked by an alkylene bridge of between one and three additional carbon atoms (i.e., a bridging group of the form —(CH2)w—, where w is 1, 2, or 3). Representative examples of bicyclic cycloalkenyls include, but are not limited to, norbornenyl and bicyclo[2.2.2]oct-2-enyl. Fused bicyclic cycloalkenyl ring systems contain a monocyclic cycloalkenyl ring fused to either a phenyl, a monocyclic cycloalkyl, a monocyclic cycloalkenyl, a monocyclic heterocyclyl, or a monocyclic heteroaryl. The bridged or fused bicyclic cycloalkenyl is attached to the parent molecular moiety through any carbon atom contained within the monocyclic cycloalkenyl ring. Cycloalkenyl groups are optionally substituted with one or two groups which are independently oxo or thia.
The term “halo” or “halogen” as used herein, means —Cl, —Br, —I or —F.
The term “haloalkyl” as used herein, means at least one halogen, as defined herein, appended to the parent molecular moiety through an alkyl group, as defined herein. Representative examples of haloalkyl include, but are not limited to, chloromethyl, 2-fluoroethyl, trifluoromethyl, pentafluoroethyl, and 2-chloro-3-fluoropentyl.
The term “heteroaryl,” as used herein, means a monocyclic heteroaryl or a bicyclic ring system containing at least one heteroaromatic ring. The monocyclic heteroaryl can be a 5 or 6 membered ring. The 5 membered ring consists of two double bonds and one, two, three or four nitrogen atoms and optionally one oxygen or sulfur atom. The 6 membered ring consists of three double bonds and one, two, three or four nitrogen atoms. The 5 or 6 membered heteroaryl is connected to the parent molecular moiety through any carbon atom or any nitrogen atom contained within the heteroaryl. Representative examples of monocyclic heteroaryl include, but are not limited to, furyl, imidazolyl, isoxazolyl, isothiazolyl, oxadiazolyl, oxazolyl, pyridinyl, pyridazinyl, pyrimidinyl, pyrazinyl, pyrazolyl, pyrrolyl, tetrazolyl, thiadiazolyl, thiazolyl, thienyl, triazolyl, and triazinyl. The bicyclic heteroaryl consists of a monocyclic heteroaryl fused to a phenyl, a monocyclic cycloalkyl, a monocyclic cycloalkenyl, a monocyclic heterocyclyl, or a monocyclic heteroaryl. The fused cycloalkyl or heterocyclyl portion of the bicyclic heteroaryl group is optionally substituted with one or two groups which are independently oxo or thia. When the bicyclic heteroaryl contains a fused cycloalkyl, cycloalkenyl, or heterocyclyl ring, then the bicyclic heteroaryl group is connected to the parent molecular moiety through any carbon or nitrogen atom contained within the monocyclic heteroaryl portion of the bicyclic ring system. When the bicyclic heteroaryl is a monocyclic heteroaryl fused to a phenyl ring or a monocyclic heteroaryl, then the bicyclic heteroaryl group is connected to the parent molecular moiety through any carbon atom or nitrogen atom within the bicyclic ring system. Representative examples of bicyclic heteroaryl include, but are not limited to, benzimidazolyl, benzofuranyl, benzothienyl, benzoxadiazolyl, benzoxathiadiazolyl, benzothiazolyl, cinnolinyl, 5,6-dihydroquinolin-2-yl, 5,6-dihydroisoquinolin-1-yl, furopyridinyl, indazolyl, indolyl, isoquinolinyl, naphthyridinyl, quinolinyl, and purinyl. In certain embodiments, the fused bicyclic heteroaryl is a 5 or 6 membered monocyclic heteroaryl ring fused to either a phenyl ring, a 5 or 6 membered monocyclic cycloalkyl, a 5 or 6 membered monocyclic cycloalkenyl, a 5 or 6 membered monocyclic heterocyclyl, or a 5 or 6 membered monocyclic heteroaryl, wherein the fused cycloalkyl, cycloalkenyl, and heterocyclyl groups are optionally substituted with one or two groups which are independently oxo or thia.
The term “heterocyclyl” as used herein, means a monocyclic heterocycle or a bicyclic heterocycle. The monocyclic heterocycle is a 3, 4, 5, 6 or 7 membered ring containing at least one heteroatom independently selected from the group consisting of O, N, and S where the ring is saturated or unsaturated, but not aromatic. The 3 or 4 membered ring contains 1 heteroatom selected from the group consisting of O, N and S. The 5 membered ring can contain zero or one double bond and one, two or three heteroatoms selected from the group consisting of O, N and S. The 6 or 7 membered ring contains zero, one or two double bonds and one, two or three heteroatoms selected from the group consisting of O, N and S. The monocyclic heterocycle is connected to the parent molecular moiety through any carbon atom or any nitrogen atom contained within the monocyclic heterocycle. Representative examples of monocyclic heterocycle include, but are not limited to, azetidinyl, azepanyl, aziridinyl, diazepanyl, 1,3-dioxanyl, 1,3-dioxolanyl, 1,3-dithiolanyl, 1,3-dithianyl, imidazolinyl, imidazolidinyl, isothiazolinyl, isothiazolidinyl, isoxazolinyl, isoxazolidinyl, morpholinyl, oxadiazolinyl, oxadiazolidinyl, oxazolinyl, oxazolidinyl, piperazinyl, piperidinyl, pyranyl, pyrazolinyl, pyrazolidinyl, pyrrolinyl, pyrrolidinyl, tetrahydrofuranyl, tetrahydrothienyl, thiadiazolinyl, thiadiazolidinyl, thiazolinyl, thiazolidinyl, thiomorpholinyl, 1,1-dioxidothiomorpholinyl(thiomorpholine sulfone), thiopyranyl, and trithianyl. The bicyclic heterocycle is a monocyclic heterocycle fused to either a phenyl, a monocyclic cycloalkyl, a monocyclic cycloalkenyl, a monocyclic heterocycle, or a monocyclic heteroaryl.
The bicyclic heterocycle is connected to the parent molecular moiety through any carbon atom or any nitrogen atom contained within the monocyclic heterocycle portion of the bicyclic ring system. Representative examples of bicyclic heterocyclyls include, but are not limited to, 2,3-dihydrobenzofuran-2-yl, 2,3-dihydrobenzofuran-3-yl, indolin-1-yl, indolin-2-yl, indolin-3-yl, 2,3-dihydrobenzothien-2-yl, decahydroquinolinyl, decahydroisoquinolinyl, octahydro-1H-indolyl, and octahydrobenzofuranyl. Heterocyclyl groups are optionally substituted with one or two groups which are independently oxo or thia. In certain embodiments, the bicyclic heterocyclyl is a 5 or 6 membered monocyclic heterocyclyl ring fused to phenyl ring, a 5 or 6 membered monocyclic cycloalkyl, a 5 or 6 membered monocyclic cycloalkenyl, a 5 or 6 membered monocyclic heterocyclyl, or a 5 or 6 membered monocyclic heteroaryl, wherein the bicyclic heterocyclyl is optionally substituted by one or two groups which are independently oxo or thia.
The term “nitro” as used herein, means a —NO2 group.
The term “oxo” as used herein means a ═O group.
The term “saturated” as used herein means the referenced chemical structure does not contain any multiple carbon-carbon bonds. For example, a saturated cycloalkyl group as defined herein includes cyclohexyl, cyclopropyl, and the like.
The term “thia” as used herein means a ═S group.
The term “unsaturated” as used herein means the referenced chemical structure contains at least one multiple carbon-carbon bond, but is not aromatic. For example, an unsaturated cycloalkyl group as defined herein includes cyclohexenyl, cyclopentenyl, cyclohexadienyl, and the like.
An exemplary embodiment of the present invention has been described above. Those skilled in the art will understand, however, that changes and modifications may be made to this embodiment without departing from the true scope and spirit of the invention, which is defined by the claims.
This application claims the benefit of priority to U.S. Provisional Application 61/337,660 filed Feb. 10, 2010, which is hereby incorporated by reference herein.
Filing Document | Filing Date | Country | Kind | 371c Date |
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PCT/US11/24359 | 2/10/2011 | WO | 00 | 9/4/2012 |
Number | Date | Country | |
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61337660 | Feb 2010 | US |