Patent Grant
11319377
The technology relates to immunogens, and to binding agents that bind the immunogens, like monoclonal antibodies, for identification or isolation of cancer cells that contain the immunogens, or treatment or prevention of cancers containing the cancer cells, especially in dogs.
Binding agents like monoclonal antibodies are useful in diagnosis and treatment of diseases like cancer, in canines (dogs), for example, a type of cancer is B cell lymphoma in which uncontrolled B cell proliferation can lead to illness and death. Lymphoma also occurs in humans and may be treated with anti-human. CD20 antibodies, like. Rituximab, for example. These antibodies, that react with or bind human CD20, generally do not bind canine CD20 (Jubala et al., Vet Pathol July; 42(4):468-76, 2005; Impellizeri et al., Vet. J., May; 171(3):556-8, 2006; Gravanis et al., The Oncologist, December; 15:1335-1343, 2010). Accordingly, binding agents capable of interacting with CD20 on the surface of canine B cells are desired. The technology described herein provides these reagents and therapeutics, as shown below.
In certain embodiments, this disclosure relates to reagents and methods for preventing and/or treating canine disease conditions (e.g., lymphoma). For example, epitopes of canine CD20 have been identified that may be targeted to deplete canine blood and/or tissues of B cell lymphoma cells. Immunogens have been identified, as described herein, that may be used to induce and/or enhance an immune response (e.g., the production of antibodies) suitable for use in preventing and/or treating these diseases. Nucleic acids encoding the immunogens and the polypeptide/peptide immunogens per se, and methods for making the same are also described. In certain embodiments, the immunogens are or contain particular epitopes of interest such as LIKAPMPYV (SEQ ID NO.: 1) and/or DIHNCD (SEQ ID NO.: 2). These immunogens may be used alone and/or with other immunogens and/or “backbones” (e.g., a canine Fc) to induce and/or enhance an immune response against canine CD20, for example.
In certain embodiments, this disclosure provides binding agents useful in the isolation and/or identification of cells expressing canine CD20 or cells that contain a cell surface protein that reacts with these binding agents (e.g., B cells, B lymphoma cells, canine CD20), and/or treatment and prevention of cancer in a mammal (e.g., a canine). In certain embodiments, the binding agent may be an antibody reactive against canine CD20 expressed on a cell surface. In some embodiments, the one or more binding agents (e.g., an antibody, like a monoclonal antibody) binds to or reacts with canine CD20 at a region thereof which comprises the amino acid sequences, or epitope(s), LIKAPMPYV (SEQ ID NO.: 1) and/or DIHNCD (SEQ ID NO.: 2).
In other embodiments, methods for detecting canine cells using these binding agents are provided. In certain embodiments, cells expressing CD20 on their cell surface (e.g., B cell lymphoma) in an animal (e.g., a canine) can be identified and/or isolated by contacting a test biological sample containing the cells with the binding agent and detecting the binding agent bound to the biological sample or components thereof (e.g., lymphoma cells). In certain embodiments, the method may include comparing the amount of binding in the test biological sample to the amount of binding in a control biological sample, wherein increased binding to the test biological sample relative to the control biological sample may indicate the presence of one or more lymphoma cells in the test biological sample. In some embodiments, the biological sample is canine blood or a needle aspirate. These methods are also provided in an in vivo and or in vitro format.
In some embodiments, methods for eliminating cells expressing canine CD20 using such binding agents are also provided. Methods for treating one or more disease conditions (e.g., lymphoma) in an animal (e.g., canine) by administering to the animal at least one or more effective doses of binding agent or derivative thereof are also provided. In some embodiments in which the binding agent is a monoclonal antibody, the monoclonal antibody may be administered in a dosage amount of about 1 to about 50 mg/kg of animal body weight, about 1 to about 30 mg/kg, or about 5 to about 30 mg/kg (e.g., about 10 m/kg). The binding agents may be administered more than once over a period of time. In some embodiments, the binding agent may be administered in conjunction with one or more other agents (e.g., chemotherapeutic agents).
Also provided are kits for using the binding agents to identify or detect polypeptides and/or cells reactive therewith, and/or for using such binding agents to prevent and or treat disease (e.g., canine lymphoma). The kit may comprise, for example, a binding agent or derivative thereof in any form (e.g., in solution, lyophilized) along with, optionally, instructions for use. Other embodiments will be clear from the descriptions provided herein.
Binding Agents
This disclosure relates to binding agents that bind canine CD20 on the surface of cells in vitro and/or in vivo. The binding agents may also bind isolated canine CD20 polypeptide and/or fragments and/or derivatives thereof. Also provided are methods, for diagnosing, treating and/or preventing one or more diseases associated with the existence of cells expressing canine CD20. For instance, the binding agents may be antibodies (e.g., monoclonal antibodies) that may react with and or bind to the epitopes SEQ ID NOS.: 1 and 1 or 2. These monoclonal antibodies may comprise any one or more of the amino acid sequences shown in Tables 1 and 4-5, for example, (and/or one or more fragments and/or derivatives thereof) and may be encoded by any one or more of the nucleotide sequences shown therein (and/or one or more fragments and/or derivatives thereof). This disclosure also provides for the use of these monoclonal antibodies to isolate, identify, and or target cells expressing canine CD20 (e.g., canine B cell lymphoma cells) for inhibition (e.g., cytotoxicity) for the prevention and/of treatment of cancer in animals (e.g., canines). In certain embodiments, these monoclonal antibodies may be reactive against canine CD20 expressed on the surface of cells.
Binding agents generally interact with or bind specifically with a target. For example, the binding agents disclosed herein generally interact specifically with regions of canine CD20 as a target. Binding “specifically” to CD20 means that the amount of binding to CD20 is more than the amount of binding to non CD20 targets (i.e., there may be background nonspecific binding). Generally, specific binding of binding agents to a protein, for example, may be achieved by binding to a specific sequence of amino acids within a protein target. These sequences may be referred to as epitopes. Molecules containing the epitopes may be used to stimulate binding agents like antibodies and may be referred to as immunogens. The binding agents may also recognize specific 2- and/or 3-dimensional structures as part of the epitope. In one example, monoclonal antibodies disclosed herein may bind to epitopes of canine CD20, LIKAPMPYV (SEQ ID NO.: 1) and/or DIHNCD (SEQ ID NO.: 2).
The specific interaction or binding of a binding agent with its target is thought to be a type of equilibrium reaction. In one example, the specific binding can be quantified. The quantification may use a dissociation constant, or Kd. Kd is known in the art to be a type of equilibrium constant that describes the propensity of, in this case, an antibody to separate from the antigen or epitope to which it has bound. Thus, describes the affinity that an antibody has for an epitope. The lower the Kd, the higher is the affinity of a binding agent for its target.
In certain embodiments, the binding agent is a monoclonal antibody selected from the group consisting of 1E4, 1G10, and 1G1, as described herein. The monoclonal antibody may comprise the amino acid sequence of any one or more of SEQ ID NOS.: 3, 6, 9, 11, 13, and or 15 (e.g., as in Table 1), and/or any one or more fragments and/or derivatives thereof. The antibodies may contain any of the CDR sequences set forth in Table 4, The antibody (e.g., monoclonal antibody) may also be of any suitable isotype or isotype subclass. In certain embodiments, the antibody has a canine IgG subclass of, for example, IgGA, IgGB (e.g., SEQ ID NOS.: 55 or 57; Table 5), IgGC, and/or IgD as described in Tang et al., Vet Immunol Immunopathol., August; 80(3-4):259-70, 2001.
The binding agent may also be a derivative of an antibody (of, for example, the monoclonal antibody 1E4, 1G10, and/or 1G1) such as, for example, a Fab, F(ab′)2, Fab′ single chain antibody, Fv, single chain, mono-specific antibody, bi-specific antibody, tri-specific antibody, multi-valent antibody, chimeric antibody, canine-human chimeric antibody, canine-mouse chimeric antibody, antibody comprising a canine Fc, humanized antibody, human antibody, caninized, CDR-grafted antibody, shark antibody, nanobody (e.g., antibody consisting of a single monomeric variable domain), camelid antibody (e.g., from the Camelidae family) microbody, intrabody (e.g., intracellular antibody), and or de-fucosylated antibody and/or derivative thereof. Mimetics of binding agents and/or antibodies are also provided. The binding agent may also comprise a detectable label and/or effector moiety fixably attached thereto.
Isolated polynucleotides encoding suitable binding agents are also provided. These polynucleotides may comprise, for example, any one or more of SEQ ID NOS.: 4, 5, 7, 8, 10, 12, 14, and/or 16 (e.g., Table 1), and/or any one or more fragments and or derivatives thereof. In certain embodiments, expression vectors and or host cells comprising these polynucleotides and/or encoding and or expressing these polypeptides are also provided.
Compositions comprising these binding agents, polypeptides, peptides, polynucleotides, expression vectors, and/or host cells are also provided in some embodiments. In certain embodiments, the compositions comprise a pharmaceutically acceptable carrier.
The monoclonal antibodies disclosed here (designated as “A” antibodies for this example), that bind to a specific epitope or epitopes, may compete for binding with other antibodies (designated as “B” antibodies for this example) that recognize the same or similar epitopes, or that recognize epitopes that are in proximity to the epitopes recognized by the “A” antibodies (e g., overlapping epitopes). Competition means that one of the antibodies binds at the expense of the other antibody, or at least inhibits binding of the other antibody to a degree. For example, an “A” antibody that decreases or prevents binding of a “B” antibody is said to compete with “B” for binding. These “B” antibodies are also examples of antibodies that are part of the invention disclosed here. Competition between “A” and “B” antibodies for binding to their epitopes may be measured using so-called competition experiments. Generally, in competition experiments, the binding agents that are to be compared are added to placed in proximity with, the target to which the binding agents are capable of binding or suspected of binding. The experiments are designed so it is possible to quantify binding of the individual binding agents to the target. Competition is found, for example, when addition of at least one “A” antibody results in binding of a “B” antibody to a lesser degree than if the “A” antibody were not present. In one example, binding agent “A” competes with binding agent “B” for binding to the target, “B” may also compete with “A.” The “A” and “B” antibodies may or may not have substantially similar Kd's.
Where the binding agent is an antibody, it may be identified with reference to the nucleotide and/or amino acid sequence corresponding to the variable and/or complementarity determining regions (“CDRs”) thereof. For instance, an exemplary binding agent that is, is derived from, or is related to the monoclonal antibody 1E4, 1G10, or 1G1 may comprise a heavy and/or a light chain that each comprise one or more constant and or variable regions. The variable regions typically comprise one or more CDRs that in large part determine the binding specificity of the antibody. These monoclonal antibodies may be identified by analysis of the nucleotide sequences encoding the variable regions. The monoclonal antibodies may also be identified by analysis of the amino acid sequences of (e.g., which may be encoded by the nucleotide sequences) the variable regions. For instance, exemplary amino acid sequences of the light and heavy chain variable regions of 1E4, 1G10, and 1G1, and exemplary nucleotide sequences encoding the same, are shown below:
Any of the amino acids shown in Table 1 (and/or any one or more fragments and/or derivatives thereof) may also be substituted by any other amino acid as desired by one of ordinary skill in the art. For example, one of skill in the art may make conservative substitutions by replacing particular amino acids with others as shown in Table 7 below. Exemplary amino acids that may be substituted may include, for example, residues 26, 28, 33, and/or 34 of SEQ ID NO.: 9 (1G10 light chain variable region); residues 55 and/or 56 of SEQ ID NO.: 11 (1G10 heavy chain variable region); and/or residues 52, 53, 55 and/or 56 of SEQ ID NO.: 15 (1G1 heavy chain variable region), which may be substituted with any other amino acid including but not limited to the conservative substitutions shown in Table 7 below. Nucleotide sequences encoding the conservative amino acid substitutions may be designed using the genetic code as set forth in Table 6. Examples of such substituted amino acid sequences include, for instance:
Any of the amino acid sequences shown in Table 1, and/or any fragments and/or derivatives thereof may also be combined with any other variable region and/or CDR in any order and/or combination to form hybrid, and or fusion binding agents and/or inserted into other heavy and/or light chain variable regions using standard techniques. These may be used in conjunction with any constant regions e.g., as in Table 5).
CDRs (complementarity-determining regions) are amino acid sequences from antibodies that are, at least in part, responsible for binding of an antibody to a specific target. It is understood by those of skill in the art that CDRs may be identified using any of several techniques and/or schemes. CDRs of the binding agents shown herein may be identified using any of these techniques. For instance, one of ordinary skill in the art may identify CDRs using the Kabat Numbering Scheme, the Chothia Numbering Scheme, the Enhanced Chothia Numbering Scheme, and/or any of the available CDR Definition Schemes (e.g., AbM, contact definition, and or as described by MacCullum, et al., J. Biol., 262(5):732-745, 1996. A summary of various schemes, in part based on, for example, Kabat et al., “Sequences of Proteins of Immunological. Interest,” 5th Ed., Public Health Service, National institutes of Health, Bethesda, Md., NIH publication No. 91-3242 (1991), and Al-Lazikani et al., “Standard conformations for the canonical structures of immunoglobulins,” J. Mol. Biol., 273:927-948, 1997, is provided in Table 2 below:
CDRs may also be identified by following a set of rules such as those set forth in Table 3 below (as described at http://www.bioinf.org.uk/abs/#cdrid):
These systems for identifying CDRs are merely exemplary and others may be suitable, as would be understood by one of ordinary skill in the art. CDRs thus identified may be used to identify suitable binding agents. For instance, equivalents of one or more of the monoclonal antibodies 1E4, 1G10, and for 1G1 may be binding agents comprising the amino acid sequences. Such CDRs may also be combined with one another in any order and/or combination to form hybrid and/or fusion binding agents and/or inserted into the other heavy and/or light chain variable regions using standard techniques. The amino acid sequences shown in Table 1, and/or any one or more fragments and/or derivatives thereof, may be encoded by any of several nucleic acid sequences. These nucleic acid sequences may also be used to identify and or prepare (e.g., as nucleic acid molecules) suitable binding agents. For example, one of ordinary skill in the art may devise nucleotide sequences encoding any such amino acid sequences with reference to any one or more of Tables 1-7 herein. Exemplary nucleotide sequences encoding the light chain variable regions of 1E4, 1G10, and IG1 may be those shown in Table 1. Any of the nucleotide sequences shown in Table 1, and/or fragments and/or derivatives thereof, may be combined with one another in any order and/or combination to encode hybrid and/or fusion binding agents and/or inserted into the other nucleic acid sequences encoding light and/or heavy chain variable regions (and/or fragments and/or derivatives thereof). Exemplary fragments may be, for example, any nucleic acid sequence encoding any of the amino acid sequences shown in Table 1, and/or any fragment and/or derivative thereof (e.g., one or more CDRs thereof). Putative CDRs of the monoclonal antibodies 1E4, 1G10 and 1G1 are listed in Table 4. These CDRs were identified using the schemes set forth in, Kabat et al., “Sequences of Proteins of Immunological Interest,” 5th Ed., Public Health Service, National Institutes of Health, Bethesda, Md., NIH publication No. 91-3242 (1991), and Al-Lazikani et al, “Standard conformations for the canonical structures of immunoglobulins,” J. Mol. Biol. 273:927-948, 1997.
In some embodiments, the binding agent may comprise the amino acid sequences set forth in Table 4 above. Subgroups of these combinations and/or other combinations of the CDRs shown in Table 4 may also be suitable, as would be understood by those of in the art. In one example, various combinations of the above CDRs may be used to provide caninized antibodies.
The variable region sequences described herein (which may comprise fragments and/or derivatives thereof), including but not limited to the amino acid sequences shown in Table 1 (and/or fragments and/or derivatives thereof) and or the nucleotide sequences shown in Table 1 (and/or fragments and/or derivatives thereof) may be used in combination with one or more amino acid sequences and/or nucleotide sequences encoding one or more constant chains (and/or a fragment and/or derivatives thereof) of an antibody molecule. For instance, the variable region amino acid sequences shown in Table 1 may be joined to the constant regions of any antibody molecule of the same or a different species (e.g., human, goat, rat, sheep, chicken) of that from which the variable region amino acid sequence was derived.
Deamidation of asparagine residues to aspartic acid or isoaspartic acid is a common post-translational modification to proteins. Deamidation may occur with higher frequency when the asparagine is part of an asparagine-glycine dipeptide (Asp-Gly or N-G; the “NG” sequence). Deamidation may have detrimental effects on proteins. In one example, deamidation may potentially cause a change in the three-dimensional structure of a protein. In another example, for an antibody, deamidation in a region that affects binding to an antigen (e.g., variable regions and or CDRs) may potentially cause lower or loss of antibody binding to the antigen.
Accordingly, it may be beneficial to substitute amino acid residues potentially susceptible to post-translational deamidation with those less or not susceptible. In one example, asparagine 33 (N33) and or glycine 34 (G34) of SEQ ID NO.: 3 (light chain variable region (VL) of 1E4) may be substituted to modify the NG sequence (see, e.g., SEQ ID NOS. 71, 73, 75 and 77). SEQ ID NO.: 3 is shown below, with N33 and G34 (an NG sequence) underlined:
N33 and/or G34 may be substituted by, for example, any amino acid such as alanine (A), glutamic acid (E), phenylalanine (F), histidine (H), isoleucine (I), lysine (K), leucine (L), methionine (M), proline (P), glutamine (Q), arginine (R), threonine (T), valine (V), and/or tyrosine (Y), in any combination. In some embodiments, N33 may be substituted by, for example, alanine (A), glutamic acid (E), phenylalanine (F), histidine (H), isoleucine (I), lysine (K), leucine (L), proline (P), glutamine (Q), arginine (R), threonine (T), valine (V) or tyrosine (Y). In some embodiments, G34 may be substituted by, for example, alanine (A), glutamic acid (E), phenylalanine (F), histidine (H), isoleucine (I), lysine (K), leucine (L), proline (P), glutamine (Q), arginine (R), valine (V), tryptophan (W) or tyrosine (Y) in any combination.
In one embodiment, N33 (of, e.g., SEQ ID NO.: 9) may be substituted by lysine (K) (N33K substitution). In particular embodiments, G34 (of, e.g., SEQ ID NO.: 9), may be substituted by lysine (K) (G34K), glutamine (Q) (G34Q), or alanine (A) (G34A). In some embodiments, the substitutions may include N33K and any of G34K, G34Q, or G34A. Other substitutions may also be suitable as would be understood by one of ordinary skill in the art.
In other embodiments, asparagine 33 (N33) and/or glycine 34 (G34) of SEQ ID NO.: 9 (light chain variable region (VL) of 1G10), asparagine 55 (N55) and/or glycine 56 (G56) of SEQ ID NO.: 11 (heavy chain variable region (VH) of 1G10), or asparagine 55 (N55) and or glycine 56 (G56) of SEQ ID NO.: 15 (heavy chain variable region (VH) of 1G1) may be substituted by any suitable amino acid. In another example, one or more of asparagines 103 (N103), 183 (N183) and/or 270 (N270), and/or glycines 104 (G104), 184 (G184) and/or 271 (G271) of SEQ ID NO.: 57 (canine IgGB heavy chain constant region) may be substituted by any suitable amino acid. Additional information regarding certain substitutions is described and tested in the Examples. And other substitutions may also be suitable, as may be determined by one of ordinary skill in the art.
The constant regions may be derived from any of for example, human (e.g., IgG (IgG1, IgG2, IgG3, IgG4), IgM, IgA (IgA1 and IgA2), IgD, and IgE), canine (e.g., IgG (IgGA, IgGB, IgGC, IgGD) IgA, IgD, IgE, and IgM), chicken (e.g., IgA, IgD, IgE, IgG, IgM, IgY), goat (e.g., IgG), mouse (e.g., IgA, IgG, IgD, IgE, IgM), pig (e.g., IgA, IgG, IgD, IgE, IgM), rat (e.g., IgA, IgG, IgD, IgE, IgM), feline (e.g., IgA, IgD, IgE, IgG, IgM) and/or a fragment and or derivative thereof (e.g., as chimeric antibodies). For example, one or more of the amino acid sequences of Table 1 and/or Table 4 may be adjoined or associated with a non-canine variable and/or constant region (e.g., human) to produce a chimeric antibody. A binding agent may, for example, comprise an amino acid sequence of any of those shown in Table 1 (and or fragments and/or derivatives thereof) and, for example, a canine antibody constant region. Exemplary amino acid and nucleotide sequences of canine IgGB light and heavy chain constant regions that may be utilized as described herein are shown below in Table 5:
One of ordinary skill in the art would understand that the constant regions of binding agents that are antibodies may be encoded by SEQ ID NO.: 56 and/or 58 and/or derivative nucleotide sequences thereof. The constant regions of the binding agents may comprise the amino acid sequence of SEQ ID NO.: 55, 78, 79, 80 and for 57, and/or derivative amino acid sequences thereof. In one example, nucleotide sequences encoding the antibodies are constructed into a vector system, and then expressed in host cells. In one example, the host cells am cultured cells. In one example, the vector system is used in mammalian cultured cells under conditions where the antibodies are expressed. Example 2 describes an example of this.
In some applications, the binding agents may bind canine CD20 but have altered ability to bind Fc receptors (e.g., CD16) as compared to standard binding agents. In one example, the binding agents are antibodies that have modified glycosylation patterns. IgG molecules, for example, typically contain N-linked oligosaccharides. Some IgG molecules contain a biantennary complex-type oligosaccharide linked to the antibody heavy chain. In human IgG, the oligosaccharide is generally linked to an asparagine residue at position 297 (N297) of the heavy chain (in the constant/Fc region of the antibody heavy chain). Generally, a fucose is attached to the GLcNAC residue in the oligosaccharide that is nearest to N297. Absence of the fucose may enhance the ability of the antibodies to mediate antibody-dependent cellular cytotoxicity (ADCC). Presumably, absence/removal of the fucose enhances the ability of the antibody to interact with Fc receptors. Antibodies of this type may be referred to as “defucosylated”. Defucosylated antibodies may be produced using techniques described herein and/or that may be known in the art. In some embodiments, a nucleic acid sequence encoding an antibody may be expressed in a cell line that has modified glycosylation abilities (e.g., deleted, modified or lesser amount of fucosyl transferase) and fail to add the typical fucose moieties. A variety of these cell lines are known. In some embodiments, the antibodies disclosed herein bind to canine CD20 but contain defucosylated oligosaccharides. In one embodiment, the anti-canine CD20 antibody may contain a canine IgGB heavy chain constant region. In some embodiments, the fucose moiety typically attached to the GLcNAC nearest N183 in canine IgGB heavy chain constant region (SEQ ID NO.: 57) is absent. Other techniques may also be used to alter the typical fucosylation of antibodies and may be suitable, as would be understood by one of ordinary skill in the art.
The binding agents (e.g., antibodies) may include other modifications that may result in decreased interaction with Fc receptors (e.g., CD16). For instance, alternative or additional amino acid substitutions may be made to the antibody molecules described herein. In one embodiment, canine IgGB heavy chain constant region (e.g., of SEQ ID NO.: 57) may be substituted at one or both of amino acid residues M120 and L121. In certain embodiments, either or both of these residues may be substituted by alanine (A) or proline (P). In one embodiment, M (methionine) at position 120 was substituted by P (proline) and L (leucine) at position 121 was substituted by A (alanine), as shown below:
In studies to characterize canine IgG containing M120P and L112 A, binding to CD16a was reduced as compared to canine IgGB that did not contain the substitutions (i.e., the sequence as shown in SEQ ID NO.: 57). Canine IgGA heavy chain was used as negative control, as it minimally or does not bind CD16a in our hands. We have also found that canine IgGD heavy chain also minimally or does not bind CD16a, while canine IgGB and IgGC heavy chains do bind CD16a (also, in B cell depletion experiments, as described in Example 3 and
In one embodiment, the canine IgGB heavy chain constant region (e.g., of SEQ ID NO.: 57) N (asparagine) at position 183 was substituted by A, as shown below:
In studies to characterize canine IgGB containing the N183A substitution, binding to CD16a was reduced as compared to canine IgGB that did not contain the substitutions (i.e., the sequence as shown in SEQ ID NO.: 57). Canine IgGA heavy chain was used as negative control. Measured binding to CD16a of the molecule containing the N183A substitution was similar to the background level of binding measured for the IgGA molecule.
In one embodiment, the canine IgGB heavy chain constant region (e.g., of SEQ ID NO: 57) M at position 120 was substituted by A and L at position 121 was substituted by A, as shown below:
In studies to characterize canine IgGB containing M120A and L121A, binding to CD16a was reduced as compared to canine IgGB that did not contain the substitutions (i.e., the sequence as shown in SEQ ID NO.: 57). Canine IgGA heavy chain was used as negative control. Measured binding to CD16a of the molecule containing M120A and L121A was decreased compared to binding of IgGB that does not contain the substitutions. However, binding to CD16A of the M120A- and L121A-containing molecule was not reduced as much as for binding of the M120P and L121A molecule, or as much as for binding of the N183A molecule.
In addition to the above molecules, the canine IgGB heavy chain constant region (SEQ ID NO.: 57) may have other amino acid substitutions, for example, at one or both of M120 and L121. In one embodiment, the molecule may have a M120A substitution. In one embodiment, the molecule may have a L121A substitution. Other substitutions of M120 and/or L121, by A and/or P may be possible. In addition, any of these substitutions may be combined with the N183A substitution. Other modifications may also be suitable, as would be understood by one of ordinary skill in the art. Mixtures of antibodies having one or more of such modifications may also be suitable for various applications.
As described above, in some embodiments, binding agents may be antibodies. The term “antibody” or “antibodies” may refer to whole or fragmented antibodies in unpurified or partially purified form (e.g., hybridoma supernatant, ascites, polyclonal antisera) or in purified form. A “purified” antibody may be one that is separated from at least about 50% of the proteins with which it is initially found (e.g., as part of a hybridoma supernatant or ascites preparation). A purified antibody may be one that is separated from at least about 60%, 75%, 90%, or 95% of the proteins with which it is initially found. Suitable derivatives may also be fragments (e.g., Fab, F(ab′)2 or single chain antibodies, like Fv, for example). The antibodies may be of any suitable origin or form including, for example, murine (e.g., produced by marine hybridoma cells), or expressed as caninized antibodies, chimeric antibodies, canine antibodies, and the like.
Methods of preparing and utilizing various types of antibodies are well-known to those of skill in the art and would be suitable in practicing the present invention see, for example, Harlow, et al. Antibodies: A Laboratory Manual, Cold Spring Harbor Laboratory, 1988; Harlow, et al., Using Antibodies: A Laboratory Manual, Portable Protocol No. 1, 1998; Kohler and Milstein, Nature, 256:495, 1975; Jones et al., Nature, 321:522-525, 1986; Riechmann et al., Nature, 332:323-329, 1988; Presta, Curr. Op. Struct. Biol., 2:59:3-596, 1992; Verhoeyen et al., Science, 239:1534-1536, 1988; Hoogenboom et al. J. Mol. Biol., 227:381, 1991; Marks et al., J. Mol. Biol., 222:581, 1991; Cole et al., Monoclonal Antibodies and Cancer Therapy, Alan R. Liss, p. 77, 1985; Boerner et al., J. Immunol., 147(1):86-95, 1991; Marks et al., Bio/Technology 10, 779-783, 1992; Lonberg et al., Nature 368:856-859, 1994; Morrison, Nature 368:812-13, 1994; Fishwild et al., Nature Biotechnology 14, 845-51, 1996; Neuberger, Nature Biotechnology 14, 826, 1996; Lonberg and Huszar, Intern. Rev. Immunol. 13:65-93, 1995; as well as U.S. Pat. Nos. 4,816,567, 5,545,807, 5,545,806, 5,569,825, 5,625,126, 5,633,425, and 5,661,016). In certain applications, the antibodies may be contained within hybridoma supernatant or ascites and utilized either directly as such or following concentration using standard techniques. In other applications, the antibodies may be further purified using, for example, salt fractionation and ion exchange chromatography, or affinity chromatography using Protein A, Protein G, Protein A/G, and/or Protein L ligands covalently coupled to a solid support such as agarose beads, or combinations of these techniques. The antibodies may be stored in any suitable format, including as a frozen preparation (e.g., −20° C. or −70° C.), in lyophilized form, or under normal refrigeration conditions (e.g., 4° C.). When stored in liquid form, a suitable buffer such as Tris-buffered saline (TBS) or phosphate buffered saline (PBS) may be utilized.
The binding agents described herein are not in any way limited to antibodies. The binding agents may be any compound exhibiting similar binding properties as antibodies (e.g., a mimetic). For example, an exemplary binding agent may be one that binds SEQ ID NO.: 1 and/or SEQ ID NO.: 2 (or a polypeptide comprising SEQ ID NO.: 1 and/or 2) and/or can compete with a monoclonal antibody binding thereto (e.g., monoclonal antibodies 1E4, 1G10, and/or 1G1). In some embodiments, the binding agent may exhibit substantially the same Kd in binding assays as the binding agent (e.g., monoclonal antibody) to which it is being compared. For instance, the Kd of a particular binding agent may be measured by any suitable assay including but not limited, to the FACS assay described in the Examples (e.g.,
Exemplary mimetics may include, for example, organic compounds that specifically bind canine CD20 (e.g., SEQ ID NO.: 1, 2, and/or 59, and/or polypeptides comprising any such sequences) (see, e.g., Gebauer et al., Curr. Opin. Chem. Biol. 13 (3):245-255, 2009). Such mimetics may be, for example, an affibody (Nygren, et al., FEBS J. 275(11):2668-76, 2008), affilin (Ebersbach, et al., J. Mol. Biol. 372 (1):172-85, 2007), affitin (Krehenbrink et al., J. Mol. Biol. 383(5):1058-68, 2008), anticalin (Skerra, A., FEBS J. 275(11):2677-83, 2008), avimer (Silverman et al., Nat. Biotechnol. 23(12): 1556-61, 2005), DARPin (Stumpp et al., Drug Discov. Today 13(15-16):695-701, 2008), Fynomer (Grabulovski et al., J. Biol. Chem. 282(5):3196-3204, 2007), Kunitz domain peptide (Nixon et al., Curr. Opin. Drug Discov. Devel. 9(2):261-8, 2006), and/or a monobody (Koide et al., Methods Mol. Biol. 352:95-109, 2007). Other mimetics may also include, for example, derivative of an antibody (of, for example, the monoclonal antibody 1E4, 1G10, and/or 1G1) such as, for example, an Fab, F(ab′)2, Fab′ single chain antibody, Fv, single domain antibody, mono-specific antibody, bi-specific antibody, tri-specific antibody, multi-valent antibody, chimeric antibody, canine-human chimeric antibody, canine-mouse chimeric antibody, antibody comprising a canine Fc, humanized antibody, human antibody, caninized, CDR-grafted antibody, shark antibody, nanobody (e.g., antibody consisting of a single monomeric variable domain), camelid antibody (e.g., antibodies of members of the Camelidae family), microbody, intrabody (e.g., intracellular antibody), and/or de-fucosylated antibody and/or derivative thereof. Other binding agents are also provided herein as would be understood by one of ordinary skill in the art.
In certain embodiments, preparations of binding agents are provided. Such preparations may comprise, for example, unpurified antibody as found in hybridoma supernatants or ascites preparation, partially purified preparations, or purified preparations. Thus, provided herein are antibody preparations containing one or more binding agents purified to about 50%, 60%, 75%, 90%, or 95% purity. Typically, such preparations include a buffer such as phosphate- or tris-buffered saline (PBS or TBS, respectively). The preparations may also be formulated to contain excipients, like stabilizers, for example. The preparations may also, or alternatively comprise derivatives of such binding agents such as, for example, Fab, F(ab′)2 or single chain antibodies (Fv for example), caninized antibodies, chimeric antibodies, canine antibodies, and the like. Where the binding agents are antibodies, nucleotide sequences encoding the variable regions thereof may also be isolated from the hybridomas expressing the same cloned into expression vectors to produce certain antibody preparations (e.g., caninized antibodies). Methods for producing such preparations are well-known in the art.
The skilled artisan has many suitable techniques for using the binding agents (e.g., antibodies) described herein to identify biological samples containing proteins that bind thereto. For instance, antibodies may be utilized to isolate canine CD20 protein using, for example, immunoprecipitation or other capture-type assay. This well-known technique is performed by attaching the antibody to a solid support or chromatographic material (e.g., a bead coated with Protein A, Protein G and/or Protein L). The bound antibody is then introduced into a solution either containing or believed to contain the CD20 protein (e.g., a canine B cell lysate). Canine CD20 protein may then bind to the antibody and non-binding materials are washed away under conditions in which the CD20 protein remains bound to the antibody. The bound protein may then be separated from the antibody and analyzed as desired. Similar methods for isolating a protein using an antibody are well-known in the art. The binding agents (e.g., antibodies) may also be utilized to detect CD20 protein within a biological sample. For instance, the antibodies may be used in assays such as, for example, flow cytometric analysis, ELISA, immunoblotting (e.g., western blot), in situ detection, immunocytochemistry and/or immunohistochemistry. Methods of carrying out such assays are well-known in the art.
To assist the skilled artisan in using the antibodies described herein, the same may be provided in kit format. A kit including such antibodies and optionally other components necessary for using the antibodies to detect cells expressing canine CD20 is provided. The antibodies of the kit may be provided in any suitable form, including frozen, lyophilized, or in a pharmaceutically acceptable buffer such as TBS or PBS. The kit may also include other reagents required for utilization of the antibodies in vitro or in vivo such as buffers (e.g, TBS, PBS), blocking agents (solutions including nonfat dry milk, normal sera, Tween-2.0 Detergent, BSA, or casein), and/or detection reagents (e.g., goat anti-mouse IgG biotin, streptavidin-HRP conjugates, allophyeocyanin, B-phycoerythrin, R-phycoerythrin, peroxidase, detectable labels (e.g., fluorosceins, like DyLight, Cy3, Cy5, FITC, HiLyte Fluor 555, HiLyte Fluor 647; 5-carboxy-2,7-dichlorofluorescein, 5-Carboxyfluorescein (5-FAM). 5-HAT (Hydroxy Tryptamine), 5-Hydroxy Tryptamine (HAT), 6-JOE; 6-carboxyfluorescein (6-FAM), FITC, 6-carboxy-1,4-dichloro-2′,7′-dichloronorescein (TET), 6-carboxy-1,4-dichloro-2′,4′,5′,7′-tetra-chlorofluorescein (HEX), 6-carboxy-4′,5′-dichloro-2′,7′-dimethoxyfluorescein (JOE); Alexa fluors, like 350, 405, 430, 488, 500, 514, 532, 546, 555, 568, 594, 610, 633, 635, 647, 660, 680, 700, 750; BODIPY fluorophores, like 492/515, 493/503, 500/510, 505/515, 530/550, 542/563, 558/568, 564/570, 576/589, 581/591, 630/650-X, 650/665-X, 665/676, FL, FL ATP, FI-Ceramide, R6G SE, TMR, TMR-X conjugate, TMR-X, SE, TR, TR ATP, TR-X SE; Rhodamines, like 110, 123, B, B 200, BB, BG, B extra, 5-carboxytetramethylrhodamine (5-TAMRA), 5 GLD, 6-Carboxyrhodamine 6G, Lissamine, Lissamine Rhodamine B, Phallicidine, Phalloidine, Red, Rhod-2, ROX (6-carboxy-X-rhodamine), 5-ROX (carboxy-X-rhodamine), Sulphorhodamine B can C, Sulphorhodamine G Extra, TAMRA (6-carboxytetramethylrhodamine), Tetramethylatodamine (TRITC), WT, Texas Red, Texas Red-X) and other labels and/or staining kits (e.g., ABC Staining Kit, Pierce). The kits may also include other reagents and/or instructions for using the antibodies in commonly utilized assays described above such as, for example, flow cytometric analysis, ELISA, immunoblotting western blot), in situ detection, immunocytochemistry, immunohistochemistry. In one embodiment, the detectable labels may be fixably attached to the binding agents. In one example, the detectable labels are fixably attached to the binding agents by chemical bonds. In one example, the chemical bonds are covalent chemical bonds. In one example, the detectable labels are conjugated to the binding agents.
In one embodiment, the kit provides a monoclonal antibody in purified form. In another embodiment, the monoclonal antibody may be provided in biotinylated form either alone or along with an avidin-conjugated detection reagent (e.g, antibody). In another embodiment, the kit includes fluorescently-labelled antibodies that may be used to directly detect canine CD20. Buffers and the like required for using any of these systems are well-known in the art and may be prepared by the end-user or provided as a component of the kit. The kit may also include a solid support containing positive- and negative-control protein and/or tissue samples. For example, kits for performing spotting or western blot-type assays may include control cell or tissue lysates for use in SDS-PAGE or nylon or other membranes containing pre-fixed control samples with additional space for experimental samples. Kits for visualization of canine CD20 in cells on slides may include pre-formatted slides containing control cell or tissue samples with additional space for experimental samples.
The binding agents described herein and/or derivatives thereof may also be incorporated into compositions for use in vitro or in vivo. The antibodies or derivatives thereof may also be fixably attached to functional effector moieties such as cytotoxic drugs or toxins, or active fragments thereof such as diphtheria A chain, exotoxin A chain, ricin A chain, abrin A chain, curcin, crotin, phenomycin, enornycin, among others. Functional moieties may also include radiochemicals. In one embodiment, the effector moieties may be fixably attached to the binding agents. In one example, the detectable labels are fixably attached to the binding agents by chemical bonds. In one example, the chemical bonds are covalent chemical bonds. In one example, the effector moieties are conjugated to the binding agents.
The binding agents may be used alone or in combination with another agent for preventing and or treating disease. One such disease is B cell lymphoma (e.g., diffuse large cell B cell lymphoma, follicular lymphoma, mucosa-associated lymphatic tissue lymphoma (MALT), small coli lymphocytic lymphoma, chronic lymphocytic leukemia, mantel cell lymphoma, Burkitt's lymphoma, mediastinal large B cell lymphoma, Waldenstrom macroglobulinemia, nodal marginal zone B cell lymphoma (NMZL), splenic marginal zone lymphoma (SMZL), intravascular large B-cell lymphoma, primary effusion lymphoma, lymphomatoid granulomatosis, and the like), particularly in canine animals. The binding agents may also be combined with or used in conjunction with (e.g., as part of a treatment regimen) other anti-cancer agents such as, for example, cyclophosphamide (e.g., Cytoxan, Neosar), Adriamycin doxorubicin/hydroxydoxorubicin), vincristine (e.g., Oncovin), prednisone (e.g., Deltasone, Orasone), L-asparaginase, chlorambucil, lomustine (CCNU), cytosine arabinoside, mitoxantrone, and/or combinations thereof. A combination of such anti-cancer agents may refer to simultaneous and/or sequential administration.
The binding agents may also be used treat various autoimmune diseases. Example diseases may include, but are not limited to, autoimmune hemolytic anemia, immune-mediated thrombocytopenia, lupus, autoimmune blistering diseases, immune-mediated arthritis and atopic dermatitis.
The antibodies described herein and or derivatives thereof may be used in assays to determine the presence of a disease state in a patient, to predict prognosis, or to determine the effectiveness of a chemotherapeutic or other treatment regimen. Expression profile assays, performed as described herein or as is otherwise known in the art, may be used to determine the relative level of expression of CD20. The level of expression may then be correlated with base (e.g., control) levels to determine whether a particular disease is present within the patient, the patient's prognosis, or whether a particular treatment regimen is effective. For example, if the patient is being treated with a particular chemotherapeutic regimen, a decreased level of expression of an immunogenic target in the patient's tissues (e.g., in peripheral blood, breast tissue biopsy) may indicate the regimen is decreasing the cancer load in that host. Similarly, if the level of expression is increasing, this may indicate the regimen is not having the desired effect and another therapeutic modality may be selected.
It is also possible to use the antibodies described herein as reagents in drug screening assays. The reagents may be used to ascertain the effect of a drug candidate on the expression of the immunogenic target in a cell line, or a cell or tissue of a patient. The expression profiling technique may be combined with high throughput screening techniques to allow rapid identification of useful compounds and monitor the effectiveness of treatment with a drug candidate (see, for example, Zlokarnik et al., Science 279:84-8, 1998). Drug candidates may be chemical compounds, nucleic acids, proteins, antibodies, or derivatives therefrom, whether naturally occurring or synthetically derived. Drug candidates thus identified may be utilized, among other uses, as pharmaceutical compositions for administration to patients or for use in further screening assays.
The antibodies described herein may be prepared as an injectable preparation, such as in suspension in a non-toxic parenterally acceptable diluent or solvent. Suitable vehicles and solvents that may be utilized include water, Ringer's solution, and isotonic sodium chloride solution, TBS and PBS, among others. The formulations may contain excipients, like stablizers, for example. In certain applications, the antibodies are suitable for use in vitro. In other applications, the antibodies are suitable for use in vivo. The preparations suitable for use in either case are well-known in the art and will vary depending on the particular application.
Preparation of Binding Agents and Immunization
Also provided herein are canine CD20 polypeptides and/or fragments and/or derivatives thereof (collectively referred to herein as “canine CD20”), as well as methods of preparing and using the same. An exemplary canine CD20 may comprise the amino acid sequence shown below:
Exemplary fragments of SEQ ID NO.: 59 may be SEQ ID NOS. 1 and/or 2. Thus, an exemplary canine CD20 may comprise SEQ ID NO. 59, SEQ ID NO.: 1, and/or SEQ NO.: 2.
Canine CD20 typically exhibits the ability to induce anti-CD20 antibodies in a host. Host animals generally are mammals, including but not limited to a mouse, dog, cat, goat, sheep, human being, and the like. In one example, the host may be a mouse. Administration of the canine CD20 (for example, SEQ ID NOS. 1, 2 and or 59) results in production of anti-canine CD20 antibodies in the mouse. In one example, the host may be a dog and administration of the canine CD20 may result in production of an immune response in the dog that may be specific for cells expressing CD20. The antibodies may be non-protective and/or non-neutralizing, and or may be protective and/or neutralizing antibodies, following administration to the host animal.
In certain embodiments, the antibodies may be used to detect and for isolate canine CD20 and for to detect, isolate, and/or destroy cells expressing canine CD20. In certain embodiments, the canine CD20 may share amino acid sequence identity (e.g., any of about 90%, 95%, 98%, 99%, or 99.9%) with other CD20 polypeptides (e.g., canine or otherwise). Any differences in the amino acid sequence between CD20 polypeptides are typically but not necessarily phenotypically silent, but should be useful for generating anti-CD20 immunity (e.g., inducing the production of anti-CD20 antibodies in a host).
Nucleic acids encoding CD20 are also provided, along with variants of such sequences (e.g., degenerate variants thereof). In certain embodiments, a nucleic acid molecule encoding canine CD20 may be inserted into one or more expression vectors, as discussed below in greater detail. In such embodiments, canine CD20 may be encoded by nucleotides corresponding to the amino acid sequence. The particular combinations of nucleotides that encode the various amino acids are well known in the art, as described in various references used by those skilled in the art (e.g., Lewin, B., Genes V, Oxford University Press, 1994). The nucleotide sequences encoding canine CD20 may be ascertained with reference to Table 6, for example. Nucleic acid variants may use any combination of nucleotides that encode the polypeptide of interest.
Modified CD20 may comprise at least one amino acid substitution, insertion, and/or deletion. Modified CD20 will typically remain substantially non-toxic and/or elicit neutralizing antibodies upon administration to a host. Such antibodies may bind to the same epitope as antibodies elicited following administration of another CD20 to a host. As described herein, canine CD20 may be useful in immunogenic compositions or vaccines for prevention and/or treatment of conditions for which targeting cells expressing CD20 would be beneficial (e.g., cancer such as B cell lymphoma). Suitable modifications may introduce conservative changes in the amino acid sequence of canine CD20. Conservative amino acid substitutions may involve a substitution of a native amino acid residue with a non-native residue such that there is little or no effect on the size, polarity, charge, hydrophobicity, or hydrophilicity of the amino acid residue at that position and, in particular, does not result in decreased immunogenicity. Suitable conservative amino acid substitutions are shown in Table 7.
The specific amino acid substitution selected may depend on the location of the site selected.
The anti-CD20 antibodies, may be combined with one or more pharmaceutically acceptable carriers prior to administration to a host. A pharmaceutically acceptable carrier is a material that is not biologically or otherwise undesirable, e.g., the material may be administered to a subject, without causing any undesirable biological effects or interacting in a deleterious manner with any of the other components of the pharmaceutical composition in which it is contained. The carrier would naturally be selected to minimize any degradation of the active ingredient and to minimize any adverse side effects in the subject, as would be well known to one of skill in the art.
Suitable pharmaceutical carriers and their formulations are described in, for example, Remington's: The Science and Practice of Pharmacy, 21st Edition, David B. Troy, ed., Lippicott Williams & Wilkins (2005). Typically, an appropriate amount of a pharmaceutically-acceptable salt is used in the formulation to render the formulation isotonic. Examples of the pharmaceutically-acceptable carriers include, but are not limited to, sterile water, saline, buffered solutions like Ringer's solution, and dextrose solution. The pH of the solution is generally from about 5 to about 8 or from about 7 to about 7.5. Other carriers include sustained-release preparations such as semipermeable matrices of solid hydrophobic polymers containing polypeptides or fragments thereof. Matrices may be in the form of shaped articles, e.g., films, liposomes or microparticles. It will be apparent to those persons skilled in the art that certain carriers may be more preferable depending upon, for instance, the route of administration and concentration of composition being administered. Carriers are those suitable for administration of polypeptides and/or fragments thereof to humans or other subjects.
Pharmaceutical compositions may also include carriers, thickeners, diluents, buffers, preservatives, surface active agents, adjuvants, immunostimulants, in addition to the immunogenic polypeptide, or the anti-CD20 antibodies. Pharmaceutical compositions may also include one or more active ingredients such as antimicrobial agents, antiinflammatory agents and anesthetics.
The compositions described herein may be administered to animals in vivo to generate an immune response against an immunogen SEQ ID NOS. 1, 2 and 59), to detect cells expressing canine CD20, and or treat a disease condition in which cells expressing CD20 may need to be eliminated (e.g., B cell lymphoma). In certain embodiments, this disclosure also provides binding agents such as antibodies (e.g., including monoclonal antibodies) useful in the isolation and or identification of cells expressing canine CD20 or a cell surface protein that reacts with such binding agents (e.g., B cells, B lymphoma cells, canine CD20) and/or treatment and prevention of cancer in a mammal (e.g., a canine). Thus, in certain embodiments, the binding agent may be an antibody reactive against canine. CD20 expressed on the cell surface. In some embodiments, the one or more binding agents (e.g., an antibody such as a monoclonal antibody) that binds to or reacts with canine CD20 at a region thereof which comprises SEQ ID NO.: 1, SEQ ID NO.: 2, and/or SEQ ID NO.: 59 (and/or fragments and/or derivatives thereof).
Uses of Binding Agents
In some embodiments, methods for detecting canine cells using binding agents are provided. In certain embodiments, cells expressing CD20 on their cell surface (e.g., B cell lymphoma) in an animal (e.g., a canine), can be detected by contacting a test biological sample with a binding agent or derivative thereof and detecting the binding agent bound to the biological sample or components thereof. In certain embodiments, the method may comprise comparing the amount of binding to the test biological sample or components thereof to the amount of binding to a control biological sample or components thereof, wherein increased binding to the test biological sample or components thereof relative to the control biological sample or components thereof indicates the presence of a lymphoma cell in the test biological sample. In some embodiments, the biological sample may be canine blood or needle aspirates. Such methods are also provided in an in vivo and/or in vitro format.
In some embodiments, methods for decreasing the viability and/or number of cells expressing canine CD20 in a host using such binding agents are also provided. Methods for treating one or more disease conditions (e.g., lymphoma) in a mammalian host comprising administering to the mammal at least one or more effective doses of one or more binding agents (and/or derivative(s) thereof) described herein are also provided. In some embodiments, the binding agent is a monoclonal antibody or fragment or derivative thereof comprising one or more of the amino acid sequences shown in Tables 1, 4, and/or 5. The binding agent may be administered in a dosage amount of about 1 to about 50 mg/kg of body weight of the mammal, about 1 to about 30 mg/kg, or about 1 to about 15 mg/kg (e.g., about any of 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 35, or 40 mg/kg). In certain embodiments, the binding agent may be administered to the mammal (e.g., intradermally, intravenously, orally, rectally) at about 1, 5 or 10 mg/kg one or more times. When multiple doses are administered, the doses may comprise about the same or different amounts of binding agent in each dose. The doses may also be separated in time from one another by the same or different intervals. For instance, the doses may be separated by about any of 6, 12, 24, 36, 48, 60, 72, 84, or 96 hours, one week, two weeks, three weeks, one month, two months, three months, four months, five months, six months, seven months, eight months, nine months, 10 months, 11 months, 12 months, 1.5 years, 2 years, 3 years, 4 years, 5 years, or any time period before, after, and/or between any of these time periods. In some embodiments, the binding agents may be administered in conjunction with other agents (e.g., chemotherapeutic agents), as described above. Such other agents may be administered about simultaneously with the binding agents, or at a different time and/or frequency. Other embodiments of such methods may also be appropriate as could be readily determined by one of ordinary skill in the art.
Generally, a dose of the monoclonal antibody that has the effect of decreasing the number, proliferation, detrimental effects, and so on, of the cancer cells in a dog, is called an effective dose.
Kits comprising any of the immunogens and/or binding agents described herein, optionally also including instructions for using such immunogens and/or binding agents, are also provided, and may facilitate the methods. For example, a kit may contain a composition comprising a binding agent (e.g., mouse monoclonal antibody or chimeric antibody preparation). The composition may further comprise a pharmaceutically acceptable carrier (e.g., phosphate-buffered saline) and may be in solution, frozen, lyophilized, or other suitable form. The kit may also include one or more control binding agents (e.g., a negative control that does not bind the target of the assay for which the kit is designed, or a positive control which may be supplied along with a sample to which the positive control is known to bind) and or instructions for use. As the kits could be used for in vitro or in vivo assays and/or treatments (e.g., a kit for administration to a mammal), the instructions may vary depending on the particular use for which the kit is designed. Other embodiments of such kits that could be provided would be readily apparent to one of ordinary skill in the art.
It must be noted that, as used in the specification and the appended claims, the singular forms “a”, “an”, and “the” include plural referents unless the context clearly dictates otherwise. Thus, for example, reference to a fragment may include mixtures of fragments and reference to a pharmaceutical carrier or adjuvant may include mixtures of two or more such carriers or adjuvants.
The terms “about”, “approximately”, and the like, when preceding a list of numerical values or range, refer to each individual value in the list or range independently as if each individual value in the list or range was immediately preceded by that term. The terms mean that the values to which the same refer are exactly, close to, or similar thereto.
As used herein, a subject or a host is meant to be an individual. The subject or host may include domesticated animals, such as cats and dogs, livestock (e.g., cattle, horses, pigs, sheep, and goats), laboratory animals (e.g., mice, rabbits, rats, guinea pigs) birds, and/or human beings, for example. In some embodiments, the subject or host may be a mammal such as a canine animal.
Optional or optionally means that the subsequently described event or circumstance can or cannot occur, and that the description includes instances where the event or circumstance occurs and instances where it does not. For example, the phrase optionally the composition can comprise a combination means that the composition may comprise a combination of different molecules or may not include a combination such that the description includes both the combination and the absence of the combination (e.g., individual members of the combination).
Ranges may be expressed herein as from about one particular value, and/or to about another particular value. When such a range is expressed, another aspect includes from the one particular value and/or to the other particular value. Similarly, when values are expressed as approximations, by use of the antecedent about or approximately, it will be understood that the particular value forms another aspect. It will be further understood that the endpoints of each of the ranges are significant both in relation to the other endpoint, and independently of the other endpoint. Ranges (e.g., 90-100%) are meant to include the range per se as well as each independent value within the range as if each value was individually listed.
When the terms prevent, preventing, and prevention are used herein in connection with a given treatment for a given condition (e.g., preventing infection by Streptococcus sp.), it is meant to convey that the treated patient either does not develop a clinically observable level of the condition at all, or develops it more slowly and/or to a lesser degree than he/she would have absent the treatment. These terms are not limited solely to a situation in which the patient experiences no aspect of the condition whatsoever. For example, a treatment will be said to have prevented the condition if it is given during exposure of a patient to a stimulus that would have been expected to produce a given manifestation of the condition, and results in the patient's experiencing fewer and/or milder symptoms of the condition than otherwise expected.
All references cited within this disclosure are hereby incorporated by reference in their entirety. Certain embodiments are further described in the following examples. These embodiments are provided as examples only and are not intended to limit the scope of the chains in any way. All references cited herein are hereby incorporated by reference. A better understanding of the present invention and of its many advantages will be had from the following examples, given by way of illustration.
A. Generation and Selection of Hybridomas
To generate mouse monoclonal antibodies against canine CD20, the 2nd extracellular domain (ECD) of canine CO20 was cloned from canine PBMC cDNA, expressed as a mouse Fc fusion protein (“ECD2-mFc”), and used as the immunogen. Canine ECD2-mFC has the amino acid sequences of SEQ ID NOS. 59 and 60, as shown below:
The immunogen contained a linear arrangement of SEQ ID NO.: 59 and SEQ ID NO. 60 and is set forth a SEQ ID NO.: 61:
Hybridomas were generated following immunization of mice with the SEQ ID NO.: 59/SEQ ID NO.: 60 fusion protein (SEQ ID NO.: 61). A primary ELISA screen was carried out using ECD2-hFc fusion protein as the antigen. Positive hybridomas were then subjected to a secondary screen using a mixture of fresh (CD20+) and cultured (CD20−) canine B-cell lymphoma cells. Clones that displayed bifurcated FACS profiles were selected for further screening. Three mAbs expressed from hybridomas generated in this approach (1E4, 1G1, and 1G10) were selected for further characterization.
The relative affinities of the mouse monoclonal antibodies 1E4, 1G1, and 1G10 for binding to canine CD20 was determined by fluorescent activated cell sorting (FACS) using canine B cell lymphoma cells, which express canine CD20. The mAbs 1E4 and 1G10 were found to exhibit the highest relative affinity to CD20: 1G10 (Kd=0.29 nm)>1E4 (Kd=0.97 nm)>>1G1 (Kd=19.78 nm)) (
In order to identify the epitope on canine CD20 that was bound by the mouse monoclonal antibodies 1E4, 1G1, and 1G10 (none of which bind human CD20), several expression constructs encoding hybrid versions of the original immunogen (CD20 ECD2-mFc) were generated (
As illustrated in
The data presented in
Next, FACS was performed on canine PBMCs using purified 1E4-mAb (
B. Sequencing of Variable Regions of 1E4, 1G1, and 1G10
The variable region DNAs from the murine monoclonal antibodies were amplified by RT-PCR from RNA obtained from the hybridoma cell lines using standard methods. Forward primers used to amplify heavy and light chain variable region sequences were those reported in Chardés T. et al FEBS Letters. June 11; 452(3):386-94, 1999. Reverse primers used to amplify heavy and light chain variable region sequences are shown below:
The heavy and light chain variable region amplification products were then cloned into a pcDNA3.1 vector and sequenced. The amino acid and nucleotide sequences of the 1E4, 1G1, and 1G10 variable regions are shown in Table 1.
A. Expression of Canine Chimeric Antibodies 1E4-cIgGB and Rituxan-cIgGB in CHO Cells
Genes encoding chimeric light and heavy antibody chains were constructed. A codon-optimized murine nucleotide sequence encoding the light chain variable region of the 1E4 antibody (SEQ ID NO.: 5) (Table 1) was fused to a codon-optimized nucleotide sequence encoding the light chain constant region from canine (SEQ ID NO.: 56) (Table 5), to produce a fusion gene encoding the chimeric antibody light chain.
In addition, a codon-optimized marine nucleotide sequence encoding the heavy chain variable region of the 1E4 antibody (SEQ ID NO.: 8) (Table 1) was fused to a codon-optimized nucleotide sequence encoding the heavy chain constant region of canine IgGB (SEQ ID NO.: 58) (Table 5), to produce a fusion gene encoding the canine chimeric antibody heavy chain.
The chimeric light and heavy chains sequences were constructed into a single plasmid expression vector. The vector was designed to contain separate mammalian transcription units (enhancer/promoter at 5′ end, poly A sequence at 3′ end) to express the chimeric light and heavy chains. The 5′ coding region of each transcription unit also encoded a leader/signal sequence to provide for processing and assembly of the encoded proteins, and secretion of the anti-canine CD20 antibody, called 1E4-cIgGB. The plasmid expression vector contained a separate transcription unit encoding a protein that is selectable in mammalian cells. The plasmid expression vectors are described in WO 2009/080720 (US 2011/0045536A) and WO 2010/022961. A separate, similar vector encoding a canine chimeric version of an anti-human CD20 antibody, called Rituxan-cIgGB, was used as a control.
Both the plasmids encoding 1E4-cIgGB and control Rituxan-cIgGB were transfected into CHO cells and stable pooled transfectants were selected for each as described in WO 2010/022961. Antibodies were produced from these stable antibody-expressing cell pools using standard fed-batch protocols. Antibodies secreted from these cells were purified over Protein G Sepharose columns using a GE Healthcare AKTA-FPLC liquid chromatography system. The isolated antibody preparations were analyzed by SDS-PAGE and size-exclusion chromatography (see
B. Modification of 1E4 Light Chain
Modifications of the antibodies described were also made using the above procedures. Asparagine 33 (N33) or glycine 34 (G34) in the asparagine-glycine dipeptide sequence (Asp-Gly or N-G) of the light chain variable region (VL) of 1E4 (SEQ ID NO.: 3) were modified to remove a potential deamidation site. In various embodiments, N33 was substituted by alanine (A), glutamic acid (E), phenylalanine (F), histidine (H), isoleucine (I), lysine (K), leucine (L), proline (P), glutamine (Q), arginine (R), threonine (T), valine (V), or tyrosine (Y). In some embodiments, G34 was substituted by alanine (A), glutamic acid (E), phenylalanine (F), histidine (H), isoleucine (I), lysine (K), leucine (L), proline (P), glutamine (Q), arginine (R), valine (V), or tyrosine (Y). Whole antibodies (heavy plus light chains) containing one of the above substitutions were tested by ELISA assay tier their ability to bind canine CD20 ECD2 peptide (SEQ ID NO.: 62).
None of the above substitutions eliminated antibody binding to ECD2 peptide and, in many cases, the effect of the substitution on antigen binding was minor.
The efficacy of the chimeric antibody 1E4-cIgGB in depleting B cells was tested in vivo in a dose-response study. It has been shown that the anti-human CD20 antibody Rituximab (Rituxan®) does not cross-react with/bind to canine CD20 (Jubala et al., Vet Pathol., July; 42(4):468-76, 2005; Impellizeri et al., Vet J., May; 171(3):556-8, 2006). As such, a chimeric form of Rituxan containing a canine IgGB Fc (Rituxan-cIgGB) was cloned and expressed as described above in Example 2 and used as a negative isotype control in this study. Pharmacodynamic effects were measured over 59 days of treatment with 1E4-cIgGB at multiple dose levels when administered by a single intravenous (IV) injection to naïve healthy male Beagle dogs. Pre-study body weights and pre-study clinical pathology data (clinical chemistry and hematology) were utilized to randomize dogs into their respective treatment groups. The experimental design is shown below:
On Day 1 of the study, a single dose (0.11, 10, or 30 mg/kg) of 1E4-cIgGB or the isotype control antibody Rituxan-cIgGB (10 mg/kg) was administered to the animals via intravenous bolus injection. Blood was collected from animals at Day 0 (pre-dose), Day 3, Day 7, Day 10, Day 14, Day 28, Day 42, and Day 59. From these blood samples, clinical pathology parameters were monitored and the percent of CD21-positive lymphocytes (B cells) in each dog were analyzed in triplicate by FACS on PBMC isolated from whole blood using a R-phycoerythrin (RPE)-conjugated mouse anti-canine CD21 antibody (AbDserotec, cat #MCA 1781PE). The percentage of B-cells remaining at each time-point was calculated for each dog by dividing the percentage of lymphocytes that were CD21 positive at that time-point by the percentage that were CD21-positive at Day 0 (pre-dose). The averages of the percentages of B-cells remaining for each treatment group were then calculated and graphed (
All antibody doses were well-tolerated in the dogs. Marked, dose-dependent decreases in the percentages of CD21-positive cells (B cells) were observed and sustained to Day 59 in beagles treated with 1, 10, or 30 mg/kg of 1E4-cIgGB. Greater than 70% depletion of B-cells was observed at Day 7 in dogs treated with either 10 or 30 mg/kg 1E4-cIgGB. CD21-positive cells remained depleted out to Day 59, with 35% and >50% suppression in animals treated with 10 or 30 mg/kg 1E4-cIgGB, respectively. Dogs that were given a single dose of either the isotype control antibody Rituxan-cIgGB (10 mg/kg) or of the lowest dose of 1E4-cIgGB (0.1 mg/kg) did not show significant changes in percentages of CD21-positive cells (B cells) during the study.
The 1E4 chimeric canine IgGB antibody described above is administered to Beagle male dogs having B cell lymphoma at an appropriate dose (e.g., 10 mg/kg) via intravenous bolus injection. Blood is collected from animals at various days including Day 0 (pre-dose) and, for example, Day 1, Day 2, Day 3, Day 4, Day 7, Day 10, Day 14, Day 28, Day 42, and Day 59. From these blood samples, clinical pathology parameters are monitored and the percent of CD21-positive lymphocytes (B cells) in each dog are analyzed in triplicate by FACS on PBMC isolated from whole blood using a R-phycoerythrin (RPE)-conjugated mouse anti-canine CD21 antibody (AbDserotec, cat #MCA1781PE). The percentage of B-cells remaining at each time-point is calculated for each dog by dividing the percentage of CD21 positive lymphocytes at that time-point by the percentage that were CD21-positive at Day 0 (pre-dose). The averages of the percentages of B-cells remaining for each treatment group may then be calculated and graphed to confirm that the treatment is effective.
While this disclosure may have been described in terms of the preferred embodiments, it is understood that variations and modifications will occur to those skilled in the art. Therefore, it is intended that the appended claims cover all such equivalent variations that come within the scope of the invention as claimed.
This application claims priority to U.S. application Ser. No. 14/354,280, filed Apr. 25, 2014, which claims priority to PCT Application Number PCT/US2012/061782, filed Oct. 25, 2012, which claims priority to U.S. Provisional Application No. 61/699,300, filed Sep. 11, 2012, and U.S. Provisional Application No. 61/551,918, filed Oct. 26, 2011.
| Number | Name | Date | Kind |
|---|---|---|---|
| 5225539 | Winter | Jul 1993 | A |
| 5500362 | Robinson et al. | Mar 1996 | A |
| 5576195 | Robinson et al. | Nov 1996 | A |
| 5593861 | Maeda et al. | Jan 1997 | A |
| 5595898 | Robinson et al. | Jan 1997 | A |
| 5618920 | Robinson et al. | Apr 1997 | A |
| 5658570 | Newman et al. | Aug 1997 | A |
| 5677180 | Robinson et al. | Oct 1997 | A |
| 5681722 | Newman et al. | Oct 1997 | A |
| 5693493 | Robinson et al. | Dec 1997 | A |
| 5693780 | Newman et al. | Dec 1997 | A |
| 5698417 | Robinson et al. | Dec 1997 | A |
| 5698435 | Robinson et al. | Dec 1997 | A |
| 5714350 | Co et al. | Feb 1998 | A |
| 5721108 | Robinson et al. | Feb 1998 | A |
| 5736137 | Anderson et al. | Apr 1998 | A |
| 5750105 | Newman et al. | May 1998 | A |
| 5756096 | Newman et al. | May 1998 | A |
| 5776456 | Anderson et al. | Jul 1998 | A |
| 5843439 | Anderson et al. | Dec 1998 | A |
| 5846818 | Robinson et al. | Dec 1998 | A |
| 5852183 | Maeda et al. | Dec 1998 | A |
| 6120767 | Robinson et al. | Sep 2000 | A |
| 6136310 | Hanna et al. | Oct 2000 | A |
| 6204023 | Robinson et al. | Mar 2001 | B1 |
| 6306393 | Goldenberg | Oct 2001 | B1 |
| 6350861 | Co et al. | Feb 2002 | B1 |
| 6399061 | Anderson et al. | Jun 2002 | B1 |
| 6455043 | Grillo-Lopez | Sep 2002 | B1 |
| 6652852 | Robinson et al. | Nov 2003 | B1 |
| 6682734 | Anderson et al. | Jan 2004 | B1 |
| 6893625 | Robinson et al. | May 2005 | B1 |
| 6933368 | Co et al. | Aug 2005 | B2 |
| 7074403 | Goldenberg et al. | Jul 2006 | B1 |
| 7151164 | Hansen et al. | Dec 2006 | B2 |
| 7312318 | Hansen et al. | Dec 2007 | B2 |
| 7338658 | Hanna et al. | Mar 2008 | B2 |
| 7381560 | Anderson et al. | Jun 2008 | B2 |
| 7422739 | Anderson et al. | Sep 2008 | B2 |
| 7435803 | Hansen et al. | Oct 2008 | B2 |
| 7452534 | Hanna et al. | Nov 2008 | B1 |
| 7531628 | Beall | May 2009 | B2 |
| 7641901 | Goldenberg et al. | Jan 2010 | B2 |
| 7744877 | Anderson et al. | Jun 2010 | B2 |
| 7772373 | Hansen et al. | Aug 2010 | B2 |
| 7829064 | Griffiths et al. | Nov 2010 | B2 |
| 7837995 | Goldenberg | Nov 2010 | B2 |
| 7910103 | Goldenberg | Mar 2011 | B2 |
| 7919087 | Hansen et al. | Apr 2011 | B2 |
| 7931903 | Hansen et al. | Apr 2011 | B2 |
| 7939073 | Goldenberg | May 2011 | B2 |
| 7981843 | Flynn et al. | Jul 2011 | B2 |
| 8057793 | Hansen et al. | Nov 2011 | B2 |
| 8084582 | Dahiyat et al. | Dec 2011 | B2 |
| 8119101 | Byrd et al. | Feb 2012 | B2 |
| 8165535 | Ahn et al. | Apr 2012 | B2 |
| 8287864 | Goldenberg et al. | Oct 2012 | B2 |
| 8329172 | Grillo-Lopez | Dec 2012 | B2 |
| 8337842 | Hansen | Dec 2012 | B2 |
| 8343496 | Griffiths et al. | Jan 2013 | B2 |
| 8367037 | Byrd et al. | Feb 2013 | B2 |
| 8383081 | Hansen et al. | Feb 2013 | B2 |
| 8465741 | Frey et al. | Jun 2013 | B2 |
| 8481003 | Griffiths et al. | Jul 2013 | B2 |
| 8529902 | Teeling et al. | Sep 2013 | B2 |
| 8569460 | Hansen | Oct 2013 | B2 |
| 8652470 | Hansen | Feb 2014 | B2 |
| 8846002 | Byrd et al. | Sep 2014 | B2 |
| 8945550 | Frey et al. | Feb 2015 | B2 |
| 8986699 | Hansen et al. | Mar 2015 | B2 |
| 9184781 | Hansen et al. | Nov 2015 | B2 |
| 9228008 | Beall | Jan 2016 | B2 |
| 9296821 | Grillo-Lopez | Mar 2016 | B2 |
| 9616120 | Hansen | Apr 2017 | B2 |
| 9790280 | Rue | Oct 2017 | B2 |
| 9938351 | Cheung | Apr 2018 | B2 |
| RE46877 | Gorman et al. | May 2018 | E |
| 9963508 | Hanson et al. | May 2018 | B2 |
| 20020041847 | Goldenberg | Apr 2002 | A1 |
| 20020150580 | Newman et al. | Oct 2002 | A1 |
| 20030054497 | Co et al. | Mar 2003 | A1 |
| 20060134098 | Bebbington et al. | Jun 2006 | A1 |
| 20080045700 | Beall | Feb 2008 | A1 |
| 20080299546 | Kano et al. | Dec 2008 | A1 |
| 20090226430 | Hanna et al. | Sep 2009 | A1 |
| 20130071385 | Hansen | Mar 2013 | A1 |
| 20130344077 | Hansen | Dec 2013 | A1 |
| 20140093454 | Teeling et al. | Apr 2014 | A1 |
| 20140234297 | Hansen | Aug 2014 | A1 |
| 20140341912 | Hansen | Nov 2014 | A1 |
| 20170002084 | Hansen | Jan 2017 | A1 |
| Number | Date | Country |
|---|---|---|
| 1994011026 | May 1994 | WO |
| 2008076487 | Jun 2008 | WO |
| Entry |
|---|
| Vlasak et al., Anal. Biochem. 392 (2009) 145-154. (Year: 2009). |
| Vajdos et al. (J Mol Biol. Jul. 5, 2002;320(2):415-28). (Year: 2002). |
| Brown et al. (J Immunol. May 1, 1996; 156(9):3285-91). (Year: 1996). |
| Colman (Research in Immunology, 145:33-36, 1994). (Year: 1994). |
| Rudikoff et al. (Proc. Natl. Acad. Sci. USA, 79: 1979-1983, Mar. 1982). (Year: 1982). |
| “Principals of Protein X-Ray Crystallography,” 3rd edition, Jan Drenth, Springer, 2007, Chapter 1, “Protein Crystallization” at pp. 1-20. (Year: 2007). |
| Abbott et al. (Immunology. Aug. 2014; 142(4):526-35). (Year: 2014). |
| Greenlee et al., Investigation of cross-reactivity between commercially available antibodies directed against human, mouse, and rat lymphocyte surface antigens and surface markers on canine cells, Veterinary Immunology and Immunopathology, 1987, pp. 285-296, v. 15. |
| Kano et al., Canine CD20 gene, Veterinary Immunology and Immunopathology, 2005, pp. 265-268, v. 108. |
| Jubala et al., CD20 expression in normal canine B cells and in canine non-Hodgkin lymphoma, 2005, pp. 468-476, v. 42. |
| Lim et al., Anti-CD20 monoclonal antibodies: historical and future perspectives, Haematologica, 2010, pp. 135-143, v. 95. |
| MacCallum et al., “Antibody-antigen interactions: contact analysis and binding site topography”, Journal of Molecular Biology, 1996, vol. 262, pp. 732-745. |
| De Pascalis et al., “Grafting of abbreviated complementarity determining regions containing specificity determining residues essential for ligand contact to engineer a less immunogenic humanized monoclonal antibody,” Journal of Immunology, 2002. vol. 169, pp. 3076-3084. |
| Sevy, Alexander M., and Jens Meiler. “Antibodies: computer-aided prediction of structure and design of function.” In Antibodies for Infectious Diseases, pp. 173-190. American Society of Microbiology, 2015. |
| Sircar, Aroop, Eric T. Kim, and Jeffrey J. Gray. “RosettaAntibody: antibody variable region homology modeling server.” Nucleic acids research 37, No. suppl_2 (2009): W474-W479. |
| Number | Date | Country | |
|---|---|---|---|
| 20170355775 A1 | Dec 2017 | US |
| Number | Date | Country | |
|---|---|---|---|
| 61699300 | Sep 2012 | US | |
| 61551918 | Oct 2011 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 14354280 | US | |
| Child | 15685257 | US |
