Patent Application
20180193418
This application provides mutated FGF1 proteins, FGFR1c-binding protein multimers, nucleic acids encoding such proteins, and methods of their use, for example to treat a metabolic disease.
Type 2 diabetes and obesity are leading causes of mortality and are associated with the Western lifestyle, which is characterized by excessive nutritional intake and lack of exercise. A central player in the pathophysiology of these diseases is the nuclear hormone receptor (NHR) PPARγ, a lipid sensor and master regulator of adipogenesis. PPARγ is also the molecular target for the thiazolidinedione (TZD)-class of insulin sensitizers, which command a large share of the current oral anti-diabetic drug market. However, there are numerous side effects associated with the use of TZDs such as weight gain, liver toxicity, upper respiratory tract infection, headache, back pain, hyperglycemia, fatigue, sinusitis, diarrhea, hypoglycemia, mild to moderate edema, and anemia. Thus, the identification of new insulin sensitizers is needed.
It is shown herein that mutants of fibroblast growth factor (FGF) 1 having reduced or eliminated mitogenic activity can be used to reduce blood glucose in a mammal. Based on these observations, methods for reducing blood glucose in a mammal, for example to treat a metabolic disease, are disclosed. Such FGF1 mutants can have an N-terminal truncation, point mutations, or combinations thereof, for example to reduce the mitogenic activity of the native FGF1 protein. Such FGF1 mutants can be used alone or in combination with other agents, such as other glucose reducing agents, such as thiazolidinedione.
In some examples, the FGF1 mutant is part of a chimeric protein, such as one that includes at least 10, at least 20, at least 30, at least 40, at least 42, at least 43, at least 44, at least 45, at least 46, at least 47, at least 48, at least 49, or at least 50 contiguous amino acids from a C-terminal end of FGF19 or FGF21.
In some examples, the FGF1 mutant is part of a chimeric protein, such as one that includes at least 10, at least 20, at least 30, at least 35, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 120, at least 150, at least 180, or at least 200 amino acids (such as 20-500, 20 to 250, 30 to 200, 35 to 180, 37 to 90, or 37 to 180 amino acids) of a protein that selectively binds to beta-Klotho (β-Klotho), such as SEQ ID NO: 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145 or 146.
In some examples, the FGF1 mutant is part of a chimeric protein, such as one that includes at least 10, at least 20, at least 30, at least 35, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 120, at least 150, at least 180, or at least 200 amino acids (such as 20-500, 20 to 250, 30 to 200, 35 to 180, 37 to 90, or 37 to 180 amino acids) of a protein that selectively binds to FGFR1c, such as SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or multimers thereof (e.g., dimers, timers), such as SEQ ID NO: 190.
In some examples, the FGF1 mutant is part of a chimeric protein, such as one that includes at least 10, at least 20, at least 30, at least 35, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 120, at least 150, at least 180, or at least 200 amino acids (such as 20-500, 20 to 250, 30 to 200, 35 to 180, 37 to 90, or 37 to 180 amino acids) of a protein that selectively binds to β-Klotho, and that includes at least 10, at least 20, at least 30, at least 35, at least 40, at least 50, at least 60, at least 70, at least 80, at least 90, at least 100, at least 120, at least 150, at least 180, or at least 200 amino acids (such as 20-500, 20 to 250, 30 to 200, 35 to 180, 37 to 90, or 37 to 180 amino acids) of a protein that selectively binds to FGFR1c, such as SEQ ID NO: 168, 169, 170 or 171.
In some examples, chimeric proteins include a linker between the FGF1 mutant and the FGF19, FGF21, FGFR1c-binding, or β-Klotho-binding sequence. In some examples, use of the disclosed methods result in one or more of: reduction in triglycerides, decrease in insulin resistance, reduction of hyperinsulinemia, increase in glucose tolerance, or reduction of hyperglycemia in a mammal.
Provided herein are mutated FGF1 proteins, which can include deletion of an N-terminal portion of FGF1, point mutations (such as amino acid substitutions, deletions, additions, or combinations thereof), or combinations of N-terminal deletions and point mutations, and methods of their use to lower glucose, for example to treat a metabolic disease. In some examples, such mutations reduce the mitogenicity of mature FGF1 (e.g., SEQ ID NO: 5), such as a reduction of at least 20%, at least 50%, at least 75% or at least 90%. In some examples, the mutant FGF1 protein is a truncated version of the mature protein (e.g., SEQ ID NO: 5), which can include for example deletion of at least 5, at least 6, at least 10, at least 11, at least 12, at least 13, or at least 20 consecutive N-terminal amino acids. In some examples, one or more of the deleted N-terminal amino acids are replaced with corresponding amino acids from FGF21 (or any FGF having low affinity for FGFR4, including FGF3, FGF5, FGF7, FGF9 and FGF10), such as at least 1, at least 2, at least 3, at least 4, at least 5, at least 10, or at least 15, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 corresponding amino acids from FGF21 (e.g., see SEQ ID NOS: 21, 219, 221, 222 and 223). In some examples, the mutant FGF1 protein is a mutated version of the mature protein (e.g., SEQ ID NO: 5), such as one containing at least 1, at least 2, at least 3, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9 or at least 10 amino acid substitutions (such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40 or 41 substitutions), such as one or more of those shown in Table 1. In some examples, the mutant FGF1 protein includes both an N-terminal truncation and point mutations. In some examples, the mutant FGF1 protein includes at least 120 consecutive amino acids from amino acids 5-141 of FGF1 (e.g., of SEQ ID NO: 2 or 4), (which in some examples can include 1-20 point mutations, such as substitutions, deletions, or additions).
In some examples, the FGF1 mutants provided herein are used to generate a chimeric protein, such as an FGF1/FGF21, FGF1/FGF19, FGF1/β-Klotho-binding protein, FGF1/FGFR1c-binding protein or FGF1/β-Klotho-binding protein/FGFR1c-binding protein. For example, the C-terminal end or the N-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to the N-terminal end of a C-terminal fragment of FGF21 or FGF19, such as SEQ ID NO: 86 or 100, respectively. Similarly, the C-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to the N-terminal end of a β-Klotho binding domain (such as SEQ ID NO: 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146 or β-Klotho binding portion of SEQ ID NO: 168, 169, 170 or 171), or the N-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to the C-terminal end of a β-Klotho-binding domain. In addition, the C-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to the N-terminal end of a FGFR1c-binding domain (such as SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167 or 190), or the N-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to the C-terminal end of a FGFR1c-binding domain. In some examples, the C-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to an FGFR1c-binding domain (such as any of SEQ ID NOS: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 190 or FGFR1c-binding portion of 168, 169, 170 or 171) and a β-Klotho-binding domain, the N-terminal end of the disclosed FGF1 mutants can be joined directly or indirectly to the C-terminal end of a FGFR1c-binding domain and a β-Klotho-binding domain, or both (such as SEQ ID NO: 168, 169, 170 or 171). Such chimeric proteins can be used to reduce blood glucose in a mammal, for example to treat a metabolic disease.
Specific exemplary FGF1 mutant proteins are shown in SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 113, 114, 115, 116, 117, 118, 119, 120, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238, which can be used to generate any of the chimeras provided herein. Specific exemplary FGF1/FGF21 chimeras are shown in SEQ ID NOS: 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 219, 221, 222, and 223. Specific exemplary FGF1/FGF19 chimeras are shown in SEQ ID NOS: 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 220, and 224. Specific exemplary FGF1/β-Klotho-binding chimeras are shown in
Also provided are FGFR1c-binding protein dimers and multimers (such as trimers) and their use to treat metabolic disease. An example is shown in
Also provided are isolated nucleic acid molecules encoding the disclosed mutant FGF1 proteins (which includes chimeras), and the FGFR1c binding proteins. Vectors and cells that include such nucleic acid molecules are also provided.
Methods of using the disclosed mutant FGF1 proteins and FGFR1c binding protein multimers (or nucleic acid molecules encoding such) are provided, such as a mutated mature FGF1 protein having a deletion of at least six contiguous N-terminal amino acids, at least one point mutation, or combinations thereof, for example to reduce or eliminate mitogenic activity. In some examples the methods include administering a therapeutically effective amount of a disclosed mutant FGF1 protein or FGFR1c binding protein (or nucleic acid molecules encoding such) to reduce blood glucose in a mammal, such as a decrease of at least 5%. In some examples the methods include administering a therapeutically effective amount of a disclosed mutant FGF1 protein or FGFR1c binding protein multimer (or nucleic acid molecules encoding such) to treat a metabolic disease in a mammal. Exemplary metabolic diseases that can be treated with the disclosed methods include but are not limited to: diabetes (such as type 2 diabetes, non-type 2 diabetes, type 1 diabetes, latent autoimmune diabetes (LAD), or maturity onset diabetes of the young (MODY)), polycystic ovary syndrome (PCOS), metabolic syndrome (MetS), obesity, non-alcoholic steatohepatitis (NASH), non-alcoholic fatty liver disease (NAFLD), dyslipidemia (e.g., hyperlipidemia), and cardiovascular diseases (e.g., hypertension). In some examples, one or more of these diseases are treated simultaneously with the disclosed FGF21 mutants. Also provided are methods of reducing fed and fasting blood glucose, improving insulin sensitivity and glucose tolerance, reducing systemic chronic inflammation, ameliorating hepatic steatosis in a mammal, reducing food intake, or combinations thereof, by administering a therapeutically effective amount of a disclosed mutant FGF1 protein or FGFR1c binding protein multimer (or nucleic acid molecules encoding such).
The foregoing and other objects and features of the disclosure will become more apparent from the following detailed description, which proceeds with reference to the accompanying figures.
The nucleic and amino acid sequences are shown using standard letter abbreviations for nucleotide bases, and three letter code for amino acids, as defined in 37 C.F.R. 1.822. Only one strand of each nucleic acid sequence is shown, but the complementary strand is understood as included by any reference to the displayed strand. The sequence listing submitted herewith, generated on Mar. 2, 2018, 296 Kb is herein incorporated by reference.
SEQ ID NOS: 1 and 2 provide an exemplary human FGF1 nucleic acid and protein sequences, respectively. Source: GenBank® Accession Nos: BC032697.1 and AAH32697.1. Heparan binding residues are amino acids 127-129 and 133-134.
SEQ ID NOS: 3 and 4 provide an exemplary mouse FGF1 nucleic acid and protein sequences, respectively. Source: GenBank® Accession Nos: BC037601.1 and AAH37601.1.
SEQ ID NO: 5 provides an exemplary mature form of FGF1 (140 aa, sometimes referred to in the art as FGF1 15-154)
SEQ ID NO: 6 provides an exemplary mature form of FGF1 with an N-terminal deletion.
SEQ ID NO: 7 provides an exemplary mature form of FGF1 with an N-terminal deletion (FGF1ΔNT(10-140αα)).
SEQ ID NO: 8 provides an exemplary mature form of FGF1 with an N-terminal deletion (FGF1ΔNT2(14-140αα)).
SEQ ID NO: 9 provides an exemplary mature form of FGF1 with an N-terminal deletion (FGF1ΔNT3(12-140αα)).
SEQ ID NO: 10 provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity.
SEQ ID NO: 11 provides an exemplary mature form of FGF1 with point mutations (K12V, L46V, E87V, N95V, P134V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity.
SEQ ID NOS: 12 and 13 provide exemplary mature forms of FGF1 with mutations in the heparan binding domain (K118N or K118E, respectively, wherein numbering refers to SEQ ID NO: 5). In some examples these sequences further include MFNLPPG at their N-terminus. Such proteins have reduced mitogenicity as compared to wild-type FGF1.
SEQ ID NOS: 14-17 provide exemplary mutated FGF1 nuclear export sequences.
SEQ ID NO: 18 provides a coding sequence for SEQ ID NO: 6.
SEQ ID NOS: 19 and 20 provide an exemplary human FGF21 nucleic acid and protein sequence. Obtained from GenBank® Accession Nos. AY359086 and AAQ89444.1. The mature form of FGF21 is about amino acids 21-208.
SEQ ID NO: 21 provides an exemplary N-terminally truncated form of FGF1, wherein the four N-terminal amino acids are from FGF21 (amino acids 40-43 of SEQ ID NO: 20).
SEQ ID NO: 22 provides an exemplary mature form of FGF1 with point mutations (K12V, C117V and P134V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability. From Xia et al., PLoS One. 7(11):e48210, 2012.
SEQ ID NO: 23 (FGF1(1-140αα)M1a) provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, C117V, and P134V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 24 (FGF1ΔNT1 (1-140αα)M1) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, C117V, and P134V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 25 (FGF1ΔNT3 (1-140αα)M1a) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, C117V, and P134V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 26 (FGF1ΔNT1 (1-140αα)M1a) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, N95V, C117V, and P134V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity, and increase thermostability.
SEQ ID NO: 27 (FGF1ΔNT3 (1-140αα)M1a) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, N95V, C117V, and P134V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity, and increase thermostability
SEQ ID NO: 28 (FGF1(1-140αα)M2) provides an exemplary mature form of FGF1 with point mutations (L44F, C83T, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability. From Xia et al., PLoS One. 7(11):e48210, 2012.
SEQ ID NO: 29 (FGF1(1-140αα)M2a) provides an exemplary mature form of FGF1 with point mutations (L44F, C83T, N95V, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 30 (FGF1(1-140αα)M2b) provides an exemplary mature form of FGF1 with point mutations (K12V, L44F, C83T, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 31 (FGF1(1-140αα)M2c) provides an exemplary mature form of FGF1 with point mutations (K12V, L44F, C83T, N95V, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 32 (FGF1ΔNT1(10-140αα)M2) provides an exemplary N-terminally truncated form of FGF1 with point mutations (L44F, C83T, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 33 (FGF1ΔNT3(12-140αα)M2) provides an exemplary N-terminally truncated form of FGF1 with point mutations (L44F, C83T, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 34 (FGF1ΔNT1(10-140αα)M2a) provides an exemplary N-terminally truncated form of FGF1 with point mutations (L44F, C83T, N95V, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 35 (FGF1ΔNT3(12-140αα)M2a) provides an exemplary N-terminally truncated form of FGF1 with point mutations (L44F, C83T, N95V, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 36 (FGF1ΔNT1(10-140αα)M2b) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, L44F, C83T, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 37 (FGF1ΔNT3(12-140αα)M2b) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, L44F, C83T, C117V, and F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 38 (FGF1ΔNT1(10-140αα)M2c) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, L44F, C83T, N95V, and C117V, F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 39 (FGF1ΔNT3(12-140αα)M2c) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, L44F, C83T, N95V, and C117V, F132W wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 40 (FGF1(1-140αα)M3) provides an exemplary mature form of FGF1 with mutations (L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G Δ104-106, and Δ120-122, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability. From Xia et al., PLoS One. 7(11):e48210, 2012.
SEQ ID NO: 41 (FGF1(1-140αα)M3a) provides an exemplary mature form of FGF1 with mutations (K12V, L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 42 (FGF1(1-140αα)M3b) provides an exemplary mature form of FGF1 with mutations (K12V, L44F, M67I, L73V, N95V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 43 (FGF1(1-140αα)M3c) provides an exemplary mature form of FGF1 with mutations (K12V, L44F, M67I, L73V, N95V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 44 (FGF1ΔNT1 (1-140αα)M3) provides an exemplary N-terminally truncated form of FGF1 with mutations (L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 45 (FGF1ΔNT3 (1-140αα)M3) provides an exemplary N-terminally truncated form of FGF1 with mutations (L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 46 (FGF1ΔNT1 (1-140αα)M3a) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 47 (FGF1ΔNT3 (1-140αα)M3a) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 48 (FGF1ΔNT1 (1-140αα)M3b) provides an exemplary N-terminally truncated form of FGF1 with mutations (L44F, M67I, L73V, N95V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 49 (FGF1ΔNT3 (1-140αα)M3b) provides an exemplary N-terminally truncated form of FGF1 with mutations (L44F, M67I, L73V, N95V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 50 (FGF1ΔNT1 (1-140αα)M3c) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, M67I, L73V, N95V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 51 (FGF1ΔNT3 (1-140αα)M3c) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, L44F, M67I, L73V, N95V, V109L, L111I, C117V, A103G, R119G, Δ104-106, and Δ120-122 wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 52 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, and K118N wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 53 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, N95, and K118E wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 54 FGF1 (1-140αα) K12V, N95V, C117V provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, and C117V wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 55 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, C117V, and K118N wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 56 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, C117V, and K118E wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 57 (FGF1ΔNT (10-140αα) provides an exemplary N-terminally truncated FGF1 with point mutations (K12V and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 58 (FGF1ΔNT2 (12-140αα) provides an exemplary N-terminally truncated FGF1 with point mutations (K12V, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 59 (FGF1ΔNT (10-140αα) provides an exemplary N-terminally truncated FGF1 with a point mutation (K12V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 60 (FGF1ΔNT2 (12-140αα) provides an exemplary N-terminally truncated FGF1 with a point mutation (K12V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 61 (FGF1ΔNT (10-140αα) provides an exemplary N-terminally truncated FGF1 with a point mutation (N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 62 (FGF1ΔNT2 (12-140αα) provides an exemplary N-terminally truncated FGF1 with a point mutation (N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 63 (FGF1ΔNT (10-140αα) provides an exemplary N-terminally truncated FGF1 with point mutations (K12V, N95V, and K118N, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 64 (FGF1ΔNT2 (12-140αα) provides an exemplary N-terminally truncated FGF1 with point mutations (K12V, N95V, and K118E, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 65 (FGF1ΔNT (10-140αα) provides an exemplary N-terminally truncated FGF1 with a point mutation (K118N, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 66 (FGF1ΔNT2 (12-140αα) provides an exemplary N-terminally truncated FGF1 with a point mutation (K118E, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 67 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K9T and N10T wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 68 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K9T, N10T, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 69 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K9T, N10T, and K118N, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 70 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with a mutant NLS sequence.
SEQ ID NO: 71 (FGF1ΔNT (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (Q40P and S47I, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 72 (FGF1ΔNT3 (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (Q40P and S47I, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 73 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, Q40P, S47I, and N95V wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 74 FGF1ΔNT (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, Q40P, S47I, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 75 (FGF1ΔNT3 (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, Q40P, S47I, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 76 (FGF1ΔNT (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (Q40P, S47I, and H93G, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 77 (FGF1ΔNT3 (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (Q40P, S47I, and H93G, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 78 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, Q40P, S47I, H93G, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 79 (FGF1ΔNT (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, Q40P, S47I, H93G, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 80 (FGF1ΔNT3 (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (K12V, Q40P, S47I, H93G, and N95V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 81 (FGF1ΔNT (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (C117P and K118V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 82 (FGF1ΔNT3 (1-140αα) provides an exemplary N-terminally truncated form of FGF1 with point mutations (C117P and K118V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 83 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with point mutations (K12V, N95V, C117P, and K118V, wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 84 (FGF1 (1-140αα) provides an exemplary mature form of FGF1 with a point mutation (R35E, wherein numbering refers to SEQ ID NO: 5). Such an antagonist can be used to treat hypoglycemia or type I diabetes.
SEQ ID NO: 85 provides an exemplary portion of an FGF2 protein sequence.
SEQ ID NO: 86 provides an exemplary C-terminal FGF21 protein sequence (P168-S209 hFGF21C-tail). This fragment can be attached at its N-terminus to the C-terminus of any FGF1 mutant provided herein to generate an FGF1/FGF21 chimera.
SEQ ID NO: 87 provides an exemplary FGF1/FGF21 chimera, which contains the K12V and N95V FGF1 point mutations. The FGF21 portion is amino acids 136 to 177.
SEQ ID NO: 88 provides an exemplary FGF1/FGF21 chimera (FGF1ΔNT-FGF21C-tail). The FGF21 portion is amino acids 127 to 168.
SEQ ID NO: 89 provides an exemplary FGF1/FGF21 chimera (FGF1ΔNT3-FGF21C-tail). The FGF21 portion is amino acids 125 to 166.
SEQ ID NO: 90 provides an exemplary FGF1/FGF21 chimera (M1-FGF21C-tail). The FGF1 portion includes point mutations K12V, C117V, and P134V. The FGF21 portion is amino acids 127 to 168.
SEQ ID NO: 91 provides an exemplary FGF1/FGF21 chimera (M1-FGF21C-tail). The FGF1 portion includes point mutations K12V, C117V, and P134V. The FGF21 portion is amino acids 125 to 166.
SEQ ID NO: 92 provides an exemplary FGF1/FGF21 chimera (M1-FGF21C-tail). The FGF1 portion includes point mutations K12V, C117V, and P134V. The FGF21 portion is amino acids 136 to 177.
SEQ ID NO: 93 provides an exemplary FGF1/FGF21 chimera (M2-FGF21C-tail). The FGF1 portion includes point mutations L44F, C83T, C117V, and F132W. The FGF21 portion is amino acids 127 to 168.
SEQ ID NO: 94 provides an exemplary FGF1/FGF21 chimera (M2-FGF21C-tail). The FGF1 portion includes point mutations L44F, C83T, C117V, and F132W. The FGF21 portion is amino acids 125 to 166.
SEQ ID NO: 95 provides an exemplary FGF1/FGF21 chimera (M2-FGF21C-tail). The FGF1 portion includes point mutations L44F, C83T, C117V, and F132W. The FGF21 portion is amino acids 136 to 177.
SEQ ID NO: 96 provides an exemplary FGF1/FGF21 chimera (M3-FGF21C-tail). The FGF1 portion includes mutations L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106 and Δ120-122. The FGF21 portion is amino acids 121 to 162.
SEQ ID NO: 97 provides an exemplary FGF1/FGF21 chimera (M3-FGF21C-tail). The FGF1 portion includes mutations L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106 and Δ120-122. The FGF21 portion is amino acids 119 to 160.
SEQ ID NO: 98 provides an exemplary FGF1/FGF21 chimera (M3-FGF21C-tail). The FGF1 portion includes mutations L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106 and Δ120-122. The FGF21 portion is amino acids 130 to 171.
SEQ ID NO: 99 provides an exemplary FGF19 protein sequence. The mature form of FGF19 is amino acids 23 to 216.
SEQ ID NO: 100 provides an exemplary C-terminal FGF19 protein sequence (L169-K216 h FGF19C-tail). This fragment can be attached at its N-terminus to the C-terminus of any FGF1 mutant provided herein to generate an FGF1/FGF19 chimera.
SEQ ID NO: 101 provides an exemplary FGF1/FGF19 chimera. The FGF1 portion includes point mutations K12V, and N95V. The FGF19 portion is amino acids 136 to 183.
SEQ ID NO: 102 provides an exemplary FGF1/FGF19 chimera (FGF1ΔNT-FGF19C-tail). The FGF19 portion is amino acids 127 to 174.
SEQ ID NO: 103 provides an exemplary FGF1/FGF19 chimera (FGF1ΔNT3-FGF19C-tail). The FGF19 portion is amino acids 125 to 172.
SEQ ID NO: 104 provides an exemplary FGF1/FGF19 chimera (M1-FGF19C-tail). The FGF1 portion includes point mutations K12V, C117V, and P134V. The FGF19 portion is amino acids 136 to 183.
SEQ ID NO: 105 provides an exemplary FGF1/FGF19 chimera (M1-FGF19C-tail). The FGF1 portion includes point mutations K12V, C117V, and P134V. The FGF19 portion is amino acids 127 to 174.
SEQ ID NO: 106 provides an exemplary FGF1/FGF19 chimera (M1-FGF19C-tail). The FGF1 portion includes point mutations K12V, C117V, and P134V. The FGF19 portion is amino acids 125 to 172.
SEQ ID NO: 107 provides an exemplary FGF1/FGF19 chimera (M2-FGF19C-tail). The FGF1 portion includes point mutations L44F, C83T, C117V, and F132W. The FGF19 portion is amino acids 136 to 183.
SEQ ID NO: 108 provides an exemplary FGF1/FGF19 chimera (M2-FGF19C-tail). The FGF1 portion includes point mutations L44F, C83T, C117V, and F132W. The FGF19 portion is amino acids 127 to 174.
SEQ ID NO: 109 provides an exemplary FGF1/FGF19 chimera (M2-FGF19C-tail). The FGF1 portion includes point mutations L44F, C83T, C117V, and F132W. The FGF19 portion is amino acids 125 to 172.
SEQ ID NO: 110 provides an exemplary FGF1/FGF19 chimera (M3-FGF19C-tail). The FGF1 portion includes mutations L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106 and Δ120-122. The FGF19 portion is amino acids 130 to 177.
SEQ ID NO: 111 provides an exemplary FGF1/FGF19 chimera (M3-FGF19C-tail). The FGF1 portion includes mutations L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106 and Δ120-122. The FGF19 portion is amino acids 121 to 168.
SEQ ID NO: 112 provides an exemplary FGF1/FGF19 chimera (M3-FGF19C-tail). The FGF1 portion includes mutations L44F, M67I, L73V, V109L, L111I, C117V, A103G, R119G, Δ104-106 and Δ120-122. The FGF19 portion is amino acids 119 to 166.
SEQ ID NO: 113 provides an exemplary FGF1 heparan binding KKK mutant analog K112D, K113Q, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 114 provides an exemplary FGF1 heparan binding KKK mutant analog with mutations K112D, K113Q, C117V, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 115 provides an exemplary FGF1 heparan binding KKK mutant analog with an N-terminal truncation and mutations K112D, K113Q, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 116 provides an exemplary FGF1 heparan binding KKK mutant analog with an N-terminal truncation and mutations K112D, K113Q, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 117 provides an exemplary FGF1 heparan binding KKK mutant analog with an N-terminal truncation and mutations K112D, K113Q, C117V, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 118 provides an exemplary FGF1 heparan binding KKK mutant analog with an N-terminal truncation and mutations K112D, K113Q, C117V, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 119 provides an exemplary FGF1 heparan binding KKK mutant analog with mutations K12V, N95V, K112D, K113Q, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 120 provides an exemplary FGF1 heparan binding KKK mutant analog with mutations K12V, N95V, K112D, K113Q, C117V, K118V (wherein numbering refers to SEQ ID NO: 5).
SEQ ID NO: 121 provides an exemplary β-Klotho binding protein dimer sequence (C2240) that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NO: 122 provides an exemplary β-Klotho binding protein sequence that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NOs: 123-130 provide exemplary β-Klotho binding protein sequences that can be attached at their N- or C-termini directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, each can be linked to SEQ ID NO: 122 via a linker and then the resulting chimera attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NOs: 131-140 provide exemplary β-Klotho binding protein sequences that can be attached at their N- or C-termini directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NO: 141 provides an exemplary β-Klotho binding protein sequence that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, it can be linked to any of SEQ ID NOS: 142-143 via a linker and then the resulting chimera attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NO: 142 provides an exemplary β-Klotho binding protein sequence that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, it can be linked to SEQ ID NO: 141 via a linker and then the resulting chimera attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NO: 143 provides an exemplary β-Klotho binding protein sequence that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, it can be linked to SEQ ID NO: 141 via a linker and then the resulting chimera attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NOs: 144-146 provide exemplary β-Klotho binding protein sequences that can be attached at their N- or C-termini directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NO: 147 provides an exemplary FGFR1c binding protein sequence that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, it can be linked to itself one or more times to generate an FGFR1c multimer, such as a dimer or a trimer.
SEQ ID NO: 148 (C2987) provides an exemplary FGFR1c binding protein sequence that can be attached at its N- or C-terminus directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, it can be linked to itself one or more times to generate an FGFR1c multimer, such as a dimer or a trimer.
SEQ ID NOS: 149-167 provide exemplary FGFR1c binding protein sequences that can be attached at their N- or C-termini directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein. In addition, each can be linked to itself one or more times to generate an FGFR1c multimer, such as a dimer or a trimer, or combinations of these binding proteins can be linked together.
SEQ ID NOs: 168-171 provide exemplary β-Klotho-FGFR1c binding protein sequences that can be attached at their N- or C-termini directly or indirectly to any of the FGF1 mutants provided herein to generate a chimeric protein.
SEQ ID NO: 172 provides an exemplary WT-FGF1/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 173 provides an exemplary ΔNT FGF1/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 174 provides an exemplary FGF1 KN/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 175 provides an exemplary FGF1KKK/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 176 provides an exemplary WT-FGF1/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 177 provides an exemplary ΔNT FGF1/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 178 provides an exemplary FGF1 KN/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 179 provides an exemplary FGF1 KKK/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 180 provides an exemplary WT-FGF1/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 181 provides an exemplary ΔNT FGF1/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 182 provides an exemplary FGF1 KN/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 183 provides an exemplary FGF1KKK/β-Klotho binding protein chimera sequence (C2240). This is represented in
SEQ ID NO: 184 provides an exemplary WT-FGF1/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 185 provides an exemplary dNT FGF1/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 186 provides an exemplary FGF1 KN/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 187 provides an exemplary FGF1KKK/β-Klotho binding protein chimera sequence (C2240) with two β-Klotho binding protein portions. This is represented in
SEQ ID NO: 188 provides an exemplary ΔNT FGF1/FGFR1c-binding protein chimera sequence (C2987). This is represented in
SEQ ID NO: 189 provides an exemplary ΔNT FGF1/FGFR1c-binding protein chimera sequence (C2987). This is represented in
SEQ ID NO: 190 provides an exemplary FGFR1c dimer chimera sequence (C2987). This is represented in
SEQ ID NO: 191 (FGF1(1-140αα) R35E, C117V) provides an exemplary mature form of FGF1 with mutations (R35E and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 192 (FGF1(1-140αα) R35E, C117V, KKK) provides an exemplary mature form of FGF1 with mutations (R35E, K112D, K113Q, C117V, and K118V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 193 (FGF1(1-140αα) R35E, C117V K12V, N95V) provides an exemplary mature form of FGF1 with mutations (K12V, R35E, N95V, and C117V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 194 (FGF1ΔNT1 (10-140αα) R35E, C117V) provides an exemplary N-terminally truncated form of FGF1 with mutations (R35E and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 195 (FGF1ΔNTKN KKK (10-140αα)) provides an exemplary N-terminally truncated form of FGF1 with mutations (K112D, K113Q, K118V, K12V, N95V, C117V, and R35E, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 196 (FGF1 KKK (KN) (1-140αα)) provides an exemplary mature form of FGF1 with mutations (K112D, K113Q, K118V, K12V, N95V, C117V, and R35E, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 197 (FGF1ΔNT1 (10-140αα) M2KN) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, R35E, C83T, N95V, C117V, and F132W, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 198 (FGF1ΔNT1 (10-140αα) M2KNKKK) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, R35E, C83T, N95V, C117V, K112D, K113Q, K118V, and F132W, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 199 (FGF1(1-140αα) R35V, C117V) provides an exemplary mature form of FGF1 with mutations (R35V and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 200 (FGF1(1-140αα) R35V, C117V, KKK) provides an exemplary mature form of FGF1 with mutations (R35V, K112D, K113Q, C117V, and K118V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 201 (FGF1(1-140αα) K12V, R35V, N95V, C117V) provides an exemplary mature form of FGF1 with mutations (K12V, R35V, N95V, and C117V wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 202 (FGF1ΔNT1 (10-140αα) R35V, C117V) provides an exemplary N-terminally truncated form of FGF1 with mutations (R35V and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 203 (FGF1ΔNTKN KKK (10-140αα)) provides an exemplary N-terminally truncated form of FGF1 with mutations (K112D, K113Q, K118V K12V, N95V, C117V, and R35V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 204 (FGF1 KKK (KN) (1-140αα)) provides an exemplary mature form of FGF1 with mutations (K112D, K113Q, K118V, K12V, N95V, C117V, and R35V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 205 (FGF1ΔNT1 (10-140αα) M2KN) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, R35V, C83T, N95V, C117V, and F132W, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 206 (FGF1ΔNT1 (10-140αα) M2KNKKK) provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, R35V, C83T, N95V, C117V, K112D, K113Q, K118V, and F132W, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 207 (FGF1-140αα) C117V, KKKR provides an exemplary mature form of FGF1 with mutations (K112D, K113Q, C117V, K118V, R119V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 208 (FGF1-140αα) C117V, KY provides an exemplary mature form of FGF1 with mutations (K12V, Y94V, C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 209 (FGF1-140αα) C117V, KE provides an exemplary mature form of FGF1 with mutations (K12V, E87V, C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 210 (FGF1-140αα) C117V, KEY provides an exemplary mature form of FGF1 with mutations (K12V, E87V, Y94V, C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 211 (FGF1-140αα) C117V, KNY provides an exemplary mature form of FGF1 with mutations (K12V, Y94V, N95V, C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 212 (FGF1-140αα) K12V, L46V, E87V, N95V, C117V, P134V provides an exemplary mature form of FGF1 with point mutations (K12V, L46V, E87V, N95V, C117V, P134V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 213 (FGF1-140αα) C117V, K118V provides an exemplary mature form of FGF1 with mutations (C117V and K118V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 214 (FGFΔNT1C 10-140αα) K12V, N95V, C83T, C117V provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, N95V, C83T, and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 215 (FGFΔNT1C 10-140αα) K12V, N95V, C16T, C83S, C117A, provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, N95V, C16T, C83S, and C117A, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 216 (FGFΔNT1 10-140αα) H21Y, L44F, H102Y, F108Y, C117V, provides an exemplary N-terminally truncated form of FGF1 with mutations (H21Y, L44F, H102Y, F108Y, and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 217 (FGFΔNT1 10-140αα) K12V, H21Y, L44F, N95V, H102Y, F108Y, C117V, provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, H21Y, L44F, N95V, H102Y, F108Y, and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 218 (FGF1 1-140αα) K12V, H21Y, L44F, N95V, H102Y, F108Y, C117V, provides an exemplary mature form of FGF1 with mutations (K12V, H21Y, L44F, N95V, H102Y, F108Y, and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenic activity and increase thermostability.
SEQ ID NO: 219 (wtFGF1ΔHBS-FGF21C-tail) provides an exemplary mature form of FGF1 with mutations that reduce the functionality of the heparin binding site to affect serum half-life and receptor affinity (K112D, K113Q, K118V, wherein numbering refers to SEQ ID NO: 5) fused to a portion of FGF21 at the C-terminus (amino acids 136 to 177) to generate a reagent that combines the metabolic benefits of a β klotho-dependent agonist (FGF21) and β klotho-independent agonist (FGF1).
SEQ ID NO: 220 (wtFGF1ΔHBS-FGF19C-tail) provides an exemplary mature form of FGF1 with mutations that reduce the functionality of the heparin binding site to affect serum half-life and receptor affinity (K112D, K113Q, K118V, wherein numbering refers to SEQ ID NO: 5) fused to a portion of FGF19 at the C-terminus (amino acids 138 to 183) to generate a reagent that combines the metabolic benefits of a β klotho-dependent agonist (FGF19) and β klotho-independent agonist (FGF1).
SEQ ID NO: 221 provides an exemplary N-terminally truncated form of FGF1, wherein the 16 N-terminal amino acids are from FGF21 (amino acids 28-43 of SEQ ID NO: 20), and the sequence includes a C117V mutation.
SEQ ID NO: 222 provides an exemplary N-terminally truncated form of FGF1, wherein the four N-terminal amino acids are from FGF21 (amino acids 40-43 of SEQ ID NO: 20), and the sequence includes a C117V mutation.
SEQ ID NO: 223 (wtFGF1-FGF21C-tail) provides an exemplary mature form of FGF1 fused to a portion of FGF21 at the C-terminus (amino acids 136 to 177) to generate a reagent that combines the metabolic benefits of a β klotho-dependent agonist (FGF21) and β klotho-independent agonist (FGF1).
SEQ ID NO: 224 (wtFGF1-FGF19C-tail) provides an exemplary mature form of FGF1 fused to a portion of FGF19 at the C-terminus (amino acids 138 to 183) to generate a reagent that combines the metabolic benefits of a β klotho-dependent agonist (FGF19) and β klotho-independent agonist (FGF1).
SEQ ID NO: 225 (FGFΔNT1C 10-140αα) K12V, N95V, C117V, provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, N95V, and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce the mitogenicity and increase the stability of FGF1.
SEQ ID NO: 226 (FGF1 KKK 1-140αα) K112D, K113Q, K118V, provides an exemplary mature form of FGF1 with mutations (K112D, K113Q, and K118V, wherein numbering refers to SEQ ID NO: 5) to reduce the mitogenicity and increase the stability of FGF1.
SEQ ID NO: 227 (FGF1 1-140αα) K12V, Q40P, S47I, H93G, N95V, provides an exemplary mature form of FGF1 with mutations (K12V, Q40P, S47I, H93G, and N95V, wherein numbering refers to SEQ ID NO: 5) to reduce the mitogenicity and increase the thermal stability of FGF1.
SEQ ID NO: 228 (FGFΔNT 10-140αα) K12V, Q40P, S47I, H93G, N95V provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, Q40P, S47I, H93G, and N95V, wherein numbering refers to SEQ ID NO: 5) to reduce the mitogenicity and increase the thermal stability of FGF1.
SEQ ID NO: 229 (FGF1 1-140αα) M2KN K12V, L44F, C83T, N95V, C117V, F132W provides an exemplary mature form of FGF1 with mutations (K12V, L44F, C83T, N95V, C117V, and F132W, wherein numbering refers to SEQ ID NO: 5) to reduce the mitogenicity without increasing the thermal stability of FGF1.
SEQ ID NO: 230 (FGF1 1-140αα) C117V provides an exemplary mature form of FGF1 with mutation (C117V, wherein numbering refers to SEQ ID NO: 5) to improve the stability of FGF1 by eliminating a free cysteine the can form disulfide brigded aggregated protein.
SEQ ID NO: 231 (FGF1 1-140αα))KKK(KN) K112D, K113Q, K118V, K12V, N95V, C117V provides an exemplary mature form of FGF1 with mutations (K112D, K113Q, K118V, K12V, N95V, and C117V, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenicity and heparan binding, and decrease the potential for protein aggregation of FGF1.
SEQ ID NO: 232 (FGF1 10-140αα) M2KN K12V, L44F, C83T, N95V, C117V, F132W, provides an exemplary N-terminally truncated form of FGF1 with mutations (K12V, L44F, C83T, N95V, C117V, and F132W, wherein numbering refers to SEQ ID NO: 5) to reduce mitogenicity and decrease the potential for protein aggregation of FGF1, without affecting the thermal stability.
SEQ ID NO: 233 (FGF1 1-140αα) R35E, C117V, provides an exemplary mature form of FGF1 with mutations (R35E and C117V, wherein numbering refers to SEQ ID NO: 5) to manipulate the receptor binding affinity/specificity and decrease the potential for protein aggregation of FGF1.
SEQ ID NO: 234 (FGF1 1-140αα) KY K12V, Y94V, C117V, provides an exemplary mature form of FGF1 with mutations (K12V, Y94V, and C117V, wherein numbering refers to SEQ ID NO: 5) to manipulate the receptor binding affinity/specificity and decrease the potential for protein aggregation of FGF1.
SEQ ID NO: 235 (FGF1 1-140αα) KE K12V, E87V, C117V, provides an exemplary mature form of FGF1 with mutations (K12V, E87V, and C117V, wherein numbering refers to SEQ ID NO: 5) to manipulate the receptor binding affinity/specificity and decrease the potential for protein aggregation of FGF1
SEQ ID NO: 236 (FGF1 1-140αα) KKKR K112D, K113Q, C117V, K118V, R119V provides an exemplary mature form of FGF1 with mutations (K112D, K113Q, C117V, K118V, and R119V, wherein numbering refers to SEQ ID NO: 5) to reduce the heparan binding affinity/specificity and decrease the potential for protein aggregation of FGF1.
SEQ ID NO: 237 (FGF1 1-140αα) KN R35E, K12V, N95V, C117V provides an exemplary mature form of FGF1 with mutations (R35E, K12V, N95V, and C117V, wherein numbering refers to SEQ ID NO: 5) to manipulate the receptor binding affinity/specificity and decrease the potential for protein aggregation of FGF1.
SEQ ID NO: 238 (FGF1 10-140αα) KN R35E, C117V provides an exemplary N-terminally truncated form of FGF1 with mutations (R35E and C117V wherein numbering refers to SEQ ID NO: 5) to manipulate the receptor binding affinity/specificity and decrease the potential for protein aggregation of FGF1.
The following explanations of terms and methods are provided to better describe the present disclosure and to guide those of ordinary skill in the art in the practice of the present disclosure. The singular forms “a,” “an,” and “the” refer to one or more than one, unless the context clearly dictates otherwise. For example, the term “comprising a cell” includes single or plural cells and is considered equivalent to the phrase “comprising at least one cell.” The term “or” refers to a single element of stated alternative elements or a combination of two or more elements, unless the context clearly indicates otherwise. As used herein, “comprises” means “includes.” Thus, “comprising A or B,” means “including A, B, or A and B,” without excluding additional elements. Dates of GenBank® Accession Nos. referred to herein are the sequences available at least as early as Oct. 21, 2013. All references and GenBank® Accession numbers cited herein are incorporated by reference in their entireties.
Unless explained otherwise, all technical and scientific terms used herein have the same meaning as commonly understood to one of ordinary skill in the art to which this disclosure belongs. Although methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present disclosure, suitable methods and materials are described below. The materials, methods, and examples are illustrative only and not intended to be limiting.
In order to facilitate review of the various embodiments of the disclosure, the following explanations of specific terms are provided:
Administration: To provide or give a subject an agent, such as a mutated FGF1 protein disclosed herein, by any effective route. Exemplary routes of administration include, but are not limited to, oral, injection (such as subcutaneous, intramuscular, intradermal, intraperitoneal, intravenous, and intratumoral), sublingual, rectal, transdermal, intranasal, vaginal and inhalation routes.
Beta-Klotho binding domain or protein: A peptide sequence that binds selectively to β-Klotho (such as human β-Klotho, OMIM 61135, GenBank® Accession No. NP_783864.1), but not to other proteins. β-Klotho is a cofactor for FGF21 activity. Such a binding domain can include one or more monomers (wherein the monomers can be the same or different β-Klotho binding proteins), thereby generating a multimer (such as a dimer). In specific examples, such a domain/protein is not an antibody. Exemplary β-Klotho binding proteins can be found in SEQ ID NOS: 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145 146, and 168-171 as well as U.S. Pat. No. 8,372,952, U.S. Publication No. 2013/0197191, and Smith et al., PLoS One 8:e61432, 2013, all herein incorporated by reference.
A β-Klotho binding protein “specifically binds” to β-Klotho when the dissociation constant (KD) is at least about 1×10−7 M, at least about 1.5×10−7, at least about 2×10−7, at least about 2.5×10−7, at least about 3×10−7, at least about at least about 5×10−7 M, at least about 1×10−8 M, at least about 5×10−8, at least about 1×10−9, at least about 5×10−9, at least about 1×10−10, or at least about 5×10−10 M. In one embodiment, KD is measured by a radiolabeled antigen binding assay (RIA) performed with the β-Klotho binding protein and β-Klotho. In another example, KD is measured using an ELISA assay.
C-terminal portion: A region of a protein sequence that includes a contiguous stretch of amino acids that begins at or near the C-terminal residue of the protein. A C-terminal portion of the protein can be defined by a contiguous stretch of amino acids (e.g., a number of amino acid residues).
Chimeric protein: A protein that includes at least a portion of the sequence of a full-length first protein (e.g., FGF1) and at least a portion of the sequence of a full-length second protein (e.g., FGF19, FGF21, β-Klotho-binding protein, or FGF1Rc-binding protein), where the first and second proteins are different. A chimeric polypeptide also encompasses polypeptides that include two or more non-contiguous portions derived from the same polypeptide. The two different peptides can be joined directly or indirectly, for example using a linker.
Diabetes mellitus: A group of metabolic diseases in which a subject has high blood sugar, either because the pancreas does not produce enough insulin, or because cells do not respond to the insulin that is produced. Type 1 diabetes results from the body's failure to produce insulin. This form has also been called “insulin-dependent diabetes mellitus” (IDDM) or “juvenile diabetes”. Type 2 diabetes results from insulin resistance, a condition in which cells fail to use insulin properly, sometimes combined with an absolute insulin deficiency. This form is also called “non insulin-dependent diabetes mellitus” (NIDDM) or “adult-onset diabetes.” The defective responsiveness of body tissues to insulin is believed to involve the insulin receptor. Diabetes mellitus is characterized by recurrent or persistent hyperglycemia, and in some examples diagnosed by demonstrating any one of:
Effective amount or Therapeutically effective amount: The amount of agent, such as a mutated FGF1 protein (or nucleic acid encoding such) disclosed herein, that is an amount sufficient to prevent, treat (including prophylaxis), reduce and/or ameliorate the symptoms and/or underlying causes of any of a disorder or disease. In one embodiment, an “effective amount” is sufficient to reduce or eliminate a symptom of a disease, such as a diabetes (such as type II diabetes), for example by lowering blood glucose.
Fibroblast Growth Factor 1 (FGF1): OMIM 13220. Includes FGF1 nucleic acid molecules and proteins. A protein that binds to the FGF receptor, and is also known as the acidic FGF. FGF1 sequences are publically available, for example from GenBank® sequence database (e.g., Accession Nos. NP_00791 and NP_034327 provide exemplary FGF1 protein sequences, while Accession Nos. NM_000800 and NM_010197 provide exemplary FGF1 nucleic acid sequences). One of ordinary skill in the art can identify additional FGF1 nucleic acid and protein sequences, including FGF1 variants.
Specific examples of native FGF1 sequences are provided in SEQ ID NOS: 1-5. A native FGF1 sequence is one that does not include a mutation that alters the normal activity of the protein (e.g., activity of SEQ ID NO: 2, 4 or SEQ ID NO: 5). A mutated FGF1 is a variant of FGF1 with different or altered biological activity, such as reduced mitogenicity (e.g., a variant of any of SEQ ID NOS: 1-5, such as one having at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to any of SEQ ID NOS: 1-5, but is not a native/wild-type sequence). In one example, such a variant includes an N-terminal truncation, at least one point mutation (such as one or more of those shown in Table 1), or combinations thereof, such as changes that decrease mitogenicity of FGF1. Mutated FGF1 proteins include FGF1 chimeras (e.g., FGF1/FGF19 chimeras). Specific exemplary FGF1 mutant proteins are shown in SEQ ID NOS: 6-13, 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 113, 114, 115, 116, 117, 118, 119, 120, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238.
Fibroblast Growth Factor 19 (FGF19): OMIM 603891. Includes FGF19 nucleic acid molecules and proteins. FGF19 regulates bile acid synthesis and has effects on glucose and lipid metabolism. FGF19 sequences are publically available, for example from the GenBank® sequence database (e.g., Accession Nos. NP_005108.1 and AAQ88669.1 provide exemplary FGF19 protein sequences, while Accession Nos. AY358302.1 and NM_005117.2 provide exemplary FGF19 nucleic acid sequences). One of ordinary skill in the art can identify additional FGF19 nucleic acid and protein sequences, including FGF19 variants.
Fibroblast Growth Factor 21 (FGF21): OMIM 609436. Includes FGF21 nucleic acid molecules and proteins. FGF21 stimulates glucose updated in adipocytes. FGF21 sequences are publically available, for example from the GenBank® sequence database (e.g., Accession Nos. AAQ89444.1, NP_061986, and AAH49592.1 provide exemplary FGF21 protein sequences, while Accession Nos. AY359086.1 and BC049592 provide exemplary FGF21 nucleic acid sequences). One of ordinary skill in the art can identify additional FGF21 nucleic acid and protein sequences, including FGF21 variants.
Fibroblast Growth Factor Receptor 1c (FGFR1c) binding domain or protein: A peptide sequence that binds selectively to FGFR1c (such as human FGFR1c, e.g., GeneBank Accession No. NP_001167536.1 or NP_056934.2), but not to other proteins. FGFR1c is a cofactor for FGF21 activity. Such a binding domain can include one or more monomers (wherein the monomers can be the same or different sequences), thereby generating a multimer (such as a dimer). In specific examples, such a domain/protein is not an antibody. Exemplary FGFR1c-binding proteins can be found in SEQ ID NOS: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167 and portions of 168, 169, 170 and 171, or a multimer thereof such as SEQ ID NO: 190, as well as U.S. Pat. No. 8,372,952, U.S. Publication No. 2013/0197191, and Smith et al., PLoS One 8:e61432, 2013, all herein incorporated by reference. Thus, reference to a FGFR1c-binding protein multimer, includes proteins made using two or more peptides having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to one or more of SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, and 190.
A FGFR1c binding protein “specifically binds” to FGFR1c when the dissociation constant (KD) is at least about 1×10−7 M, at least about 1.5×10−7, at least about 2×10−7, at least about 2.5×10−7, at least about 3×10−7, at least about at least about 5×10−7 M, at least about 1×10−8 M, at least about 5×10−8, at least about 1×10−9, at least about 5×10−9, at least about 1×10−10, or at least about 5×10−10 M. In one embodiment, KD is measured by a radiolabeled antigen binding assay (RIA) performed with the FGFR1c-binding protein and FGFR1c. In another example, KD is measured using an ELISA assay.
Fibroblast Growth Factor Receptor 1c (FGFR1c): Also known as FGFR1 isoform 2. Includes FGFR1c nucleic acid molecules and proteins. FGFR1c and β-Klotho can associate with FGF21 to form a signaling complex. FGFR1c sequences are publically available, for example from the GenBank® sequence database (e.g., Accession Nos. NP_001167536.1 and NP_056934.2 provide exemplary FGFR1c protein sequences). One of ordinary skill in the art can identify additional FGFR1c nucleic acid and protein sequences, including FGFR1c variants.
Fibroblast Growth Factor Receptor 4 (FGFR4): OMIM 134935. Includes FGFR4 nucleic acid molecules and proteins. FGFR4 can bind to some FGF proteins, including FGF1. FGFR4 sequences are publically available, for example from the GenBank® sequence database (e.g., Accession Nos. NM_002011 and AAB25788.1 provide exemplary FGFR4 protein sequences, while Accession Nos. NM_002002 and L03840.1 provide exemplary FGFR4 nucleic acid sequences). One of ordinary skill in the art can identify additional FGFR4 nucleic acid and protein sequences, including FGFR4 variants.
Host cells: Cells in which a vector can be propagated and its DNA expressed. The cell may be prokaryotic or eukaryotic. The term also includes any progeny of the subject host cell. It is understood that all progeny may not be identical to the parental cell since there may be mutations that occur during replication. However, such progeny are included when the term “host cell” is used. Thus, host cells can be transgenic, in that they include nucleic acid molecules that have been introduced into the cell, such as a nucleic acid molecule encoding a mutant FGF1 protein disclosed herein.
Isolated: An “isolated” biological component (such as a mutated FGF1 protein or nucleic acid molecule) has been substantially separated, produced apart from, or purified away from other biological components in the cell of the organism in which the component naturally occurs, such as other chromosomal and extrachromosomal DNA and RNA, and proteins. Nucleic acids molecules and proteins which have been “isolated” thus include nucleic acids and proteins purified by standard purification methods. The term also embraces nucleic acid molecules and proteins prepared by recombinant expression in a host cell as well as chemically synthesized nucleic acids. A purified or isolated cell, protein, or nucleic acid molecule can be at least 70%, at least 80%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% pure.
Linker: A moiety or group of moieties that joins or connects two or more discrete separate peptide or proteins, such as monomer domains, for example to generate a chimeric protein. In one example a linker is a substantially linear moiety.
Exemplary linkers that can be used to generate the chimeric proteins provided herein include but are not limited to: peptides, nucleic acid molecules, peptide nucleic acids, and optionally substituted alkylene moieties that have one or more oxygen atoms incorporated in the carbon backbone. A linker can be a portion of a native sequence, a variant thereof, or a synthetic sequence. Linkers can include naturally occurring amino acids, non-naturally occurring amino acids, or a combination of both. In one example a linker is composed of at least 5, at least 10, at least 15 or at least 20 amino acids, such as 5 to 10, 5 to 20, or 5 to 50 amino acids. In one example the linker is a poly alanine.
Mammal: This term includes both human and non-human mammals. Similarly, the term “subject” includes both human and veterinary subjects (such as cats, dogs, cows, and pigs) and rodents (such as mice and rats).
Metabolic disorder/disease: A disease or disorder that results from the disruption of the normal mammalian process of metabolism. Includes metabolic syndrome.
Examples include but are not limited to: (1) glucose utilization disorders and the sequelae associated therewith, including diabetes mellitus (Type I and Type-2), gestational diabetes, hyperglycemia, insulin resistance, abnormal glucose metabolism, “pre-diabetes” (Impaired Fasting Glucose (IFG) or Impaired Glucose Tolerance (IGT)), and other physiological disorders associated with, or that result from, the hyperglycemic condition, including, for example, histopathological changes such as pancreatic β-cell destruction; (2) dyslipidemias and their sequelae such as, for example, atherosclerosis, coronary artery disease, cerebrovascular disorders and the like; (3) other conditions which may be associated with the metabolic syndrome, such as obesity and elevated body mass (including the co-morbid conditions thereof such as, but not limited to, nonalcoholic fatty liver disease (NAFLD), nonalcoholic steatohepatitis (NASH), and polycystic ovarian syndrome (PCOS)), and also include thromboses, hypercoagulable and prothrombotic states (arterial and venous), hypertension, cardiovascular disease, stroke and heart failure; (4) disorders or conditions in which inflammatory reactions are involved, including atherosclerosis, chronic inflammatory bowel diseases (e.g., Crohn's disease and ulcerative colitis), asthma, lupus erythematosus, arthritis, or other inflammatory rheumatic disorders; (5) disorders of cell cycle or cell differentiation processes such as adipose cell tumors, lipomatous carcinomas including, for example, liposarcomas, solid tumors, and neoplasms; (6) neurodegenerative diseases and/or demyelinating disorders of the central and peripheral nervous systems and/or neurological diseases involving neuroinfiammatory processes and/or other peripheral neuropathies, including Alzheimer's disease, multiple sclerosis, Parkinson's disease, progressive multifocal leukoencephalopathy and Guillian-Barre syndrome; (7) skin and dermatological disorders and/or disorders of wound healing processes, including erythemato-squamous dermatoses; and (8) other disorders such as syndrome X, osteoarthritis, and acute respiratory distress syndrome. Other examples are provided in WO 2014/085365 (herein incorporated by reference).
In specific examples, the metabolic disease includes one or more of (such as at least 2 or at least 3 of): diabetes (such as type 2 diabetes, non-type 2 diabetes, type 1 diabetes, latent autoimmune diabetes (LAD), or maturity onset diabetes of the young (MODY)), polycystic ovary syndrome (PCOS), metabolic syndrome (MetS), obesity, non-alcoholic steatohepatitis (NASH), non-alcoholic fatty liver disease (NAFLD), dyslipidemia (e.g., hyperlipidemia), and cardiovascular diseases (e.g., hypertension).
N-terminal portion: A region of a protein sequence that includes a contiguous stretch of amino acids that begins at or near the N-terminal residue of the protein. An N-terminal portion of the protein can be defined by a contiguous stretch of amino acids (e.g., a number of amino acid residues).
Operably linked: A first nucleic acid sequence is operably linked with a second nucleic acid sequence when the first nucleic acid sequence is placed in a functional relationship with the second nucleic acid sequence. For instance, a promoter is operably linked to a coding sequence if the promoter affects the transcription or expression of the coding sequence (such as a mutated FGF1 coding sequence). Generally, operably linked DNA sequences are contiguous and, where necessary to join two protein coding regions, in the same reading frame.
Pharmaceutically acceptable carriers: The pharmaceutically acceptable carriers useful in this invention are conventional. Remington's Pharmaceutical Sciences, by E. W. Martin, Mack Publishing Co., Easton, Pa., 15th Edition (1975), describes compositions and formulations suitable for pharmaceutical delivery of the disclosed mutated FGF1 proteins and FGFR1c-binding protein multimers (or nucleic acid molecules encoding such) herein disclosed.
In general, the nature of the carrier will depend on the particular mode of administration being employed. For instance, parenteral formulations usually comprise injectable fluids that include pharmaceutically and physiologically acceptable fluids such as water, physiological saline, balanced salt solutions, aqueous dextrose, glycerol or the like as a vehicle. For solid compositions (e.g., powder, pill, tablet, or capsule forms), conventional non-toxic solid carriers can include, for example, pharmaceutical grades of mannitol, lactose, starch, or magnesium stearate. In addition to biologically-neutral carriers, pharmaceutical compositions to be administered can contain minor amounts of non-toxic auxiliary substances, such as wetting or emulsifying agents, preservatives, and pH buffering agents and the like, for example sodium acetate or sorbitan monolaurate.
Promoter: Ann array of nucleic acid control sequences which direct transcription of a nucleic acid. A promoter includes necessary nucleic acid sequences near the start site of transcription, such as, in the case of a polymerase II type promoter, a TATA element. A promoter also optionally includes distal enhancer or repressor elements which can be located as much as several thousand base pairs from the start site of transcription.
Recombinant: A recombinant nucleic acid molecule is one that has a sequence that is not naturally occurring (e.g., a mutated FGF1 or chimeric protein) or has a sequence that is made by an artificial combination of two otherwise separated segments of sequence. This artificial combination can be accomplished by routine methods, such as chemical synthesis or by the artificial manipulation of isolated segments of nucleic acids, such as by genetic engineering techniques. Similarly, a recombinant protein is one encoded for by a recombinant nucleic acid molecule. Similarly, a recombinant or transgenic cell is one that contains a recombinant nucleic acid molecule and expresses a recombinant protein.
Sequence identity of amino acid sequences: The similarity between amino acid (or nucleotide) sequences is expressed in terms of the similarity between the sequences, otherwise referred to as sequence identity. Sequence identity is frequently measured in terms of percentage identity (or similarity or homology); the higher the percentage, the more similar the two sequences are. Homologs or variants of a polypeptide will possess a relatively high degree of sequence identity when aligned using standard methods.
Methods of alignment of sequences for comparison are well known in the art. Various programs and alignment algorithms are described in: Smith and Waterman, Adv. Appl. Math. 2:482, 1981; Needleman and Wunsch, J. Mol. Biol. 48:443, 1970; Pearson and Lipman, Proc. Natl. Acad. Sci. U.S.A. 85:2444, 1988; Higgins and Sharp, Gene 73:237, 1988; Higgins and Sharp, CABIOS 5:151, 1989; Corpet et al., Nucleic Acids Research 16:10881, 1988; and Pearson and Lipman, Proc. Natl. Acad. Sci. U.S.A. 85:2444, 1988. Altschul et al., Nature Genet. 6:119, 1994, presents a detailed consideration of sequence alignment methods and homology calculations.
The NCBI Basic Local Alignment Search Tool (BLAST) (Altschul et al., J. Mol. Biol. 215:403, 1990) is available from several sources, including the National Center for Biotechnology Information (NCBI, Bethesda, Md.) and on the internet, for use in connection with the sequence analysis programs blastp, blastn, blastx, tblastn and tblastx. A description of how to determine sequence identity using this program is available on the NCBI website on the internet.
Homologs and variants of the mutated FGF1 proteins and coding sequences disclosed herein are typically characterized by possession of at least about 80%, at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity counted over the full length alignment with the amino acid sequence using the NCBI Blast 2.0, gapped blastp set to default parameters. For comparisons of amino acid sequences of greater than about 30 amino acids, the Blast 2 sequences function is employed using the default BLOSUM62 matrix set to default parameters, (gap existence cost of 11, and a per residue gap cost of 1). When aligning short peptides (fewer than around 30 amino acids), the alignment should be performed using the Blast 2 sequences function, employing the PAM30 matrix set to default parameters (open gap 9, extension gap 1 penalties). Proteins with even greater similarity to the reference sequences will show increasing percentage identities when assessed by this method, such as at least 95%, at least 98%, or at least 99% sequence identity. When less than the entire sequence is being compared for sequence identity, homologs and variants will typically possess at least 80% sequence identity over short windows of 10-20 amino acids, and may possess sequence identities of at least 85% or at least 90% or at least 95% depending on their similarity to the reference sequence. Methods for determining sequence identity over such short windows are available at the NCBI website on the internet. One of skill in the art will appreciate that these sequence identity ranges are provided for guidance only; it is entirely possible that strongly significant homologs could be obtained that fall outside of the ranges provided.
Thus, a mutant FGF1 protein disclosed herein can have at least 80%, at least 85%, at least 90%, at least 91%, at least 92%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 5, but is not SEQ ID NO: 5 (which in some examples has one or more, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 of the mutations or truncations shown in Tables 1 and 2). In addition, exemplary mutated FGF1 proteins have at least 80%, at least 85%, at least 90%, at least 92%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, as well as such sequences schematically shown in
Similarly, exemplary mutated FGF1 coding sequences in some examples have at least 70%, at least 80%, at least 85%, at least 90%, at least 92%, at least 95%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 18.
Similarly, exemplary β-Klotho-binding domain sequences that can be used in the mutant FGF1 chimeras disclosed herein in some examples have at least 70%, at least 80%, at least 85%, at least 90%, at least 92%, at least 95%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146 or β-Klotho-binding portions of SEQ ID NO: 168, 169, 170 or 171.
Similarly, exemplary FGFR1c binding sequences that can be used in the mutant FGF1 chimeras disclosed herein in some examples have at least 70%, at least 80%, at least 85%, at least 90%, at least 92%, at least 95%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or FGFR1c-binding portions of SEQ ID NO: 168, 169, 170, 171, or multimers such as SEQ ID NO: 190.
Subject: Any mammal, such as humans, non-human primates, pigs, sheep, cows, dogs, cats, rodents and the like which is to be the recipient of the particular treatment, such as treatment with a mutated FGF1 protein or chimera (or corresponding nucleic acid molecule) provided herein. In two non-limiting examples, a subject is a human subject or a murine subject. In some examples, the subject has one or more metabolic diseases, such as diabetes (e.g., type 2 diabetes, non-type 2 diabetes, type 1 diabetes, latent autoimmune diabetes (LAD), or maturity onset diabetes of the young (MODY)), polycystic ovary syndrome (PCOS), metabolic syndrome (MetS), obesity, non-alcoholic steatohepatitis (NASH), non-alcoholic fatty liver disease (NAFLD), dyslipidemia (e.g., hyperlipidemia), cardiovascular disease (e.g., hypertension), or combinations thereof. In some examples, the subject has elevated blood glucose.
Transduced and Transformed: A virus or vector “transduces” a cell when it transfers nucleic acid into the cell. A cell is “transformed” or “transfected” by a nucleic acid transduced into the cell when the DNA becomes stably replicated by the cell, either by incorporation of the nucleic acid into the cellular genome, or by episomal replication.
Numerous methods of transfection are known to those skilled in the art, such as: chemical methods (e.g., calcium-phosphate transfection), physical methods (e.g., electroporation, microinjection, particle bombardment), fusion (e.g., liposomes), receptor-mediated endocytosis (e.g., DNA-protein complexes, viral envelope/capsid-DNA complexes) and by biological infection by viruses such as recombinant viruses {Wolff, J. A., ed, Gene Therapeutics, Birkhauser, Boston, USA (1994)}. In the case of infection by retroviruses, the infecting retrovirus particles are absorbed by the target cells, resulting in reverse transcription of the retroviral RNA genome and integration of the resulting provirus into the cellular DNA.
Transgene: An exogenous gene supplied by a vector. In one example, a transgene includes a mutated FGF1 coding sequence (which may be part of a chimera).
Vector: A nucleic acid molecule as introduced into a host cell, thereby producing a transformed host cell. A vector may include nucleic acid sequences that permit it to replicate in the host cell, such as an origin of replication. A vector may also include one or more mutated FGF1 coding sequences (which may be part of a chimera) and/or selectable marker genes and other genetic elements known in the art. A vector can transduce, transform or infect a cell, thereby causing the cell to express nucleic acids and/or proteins other than those native to the cell. A vector optionally includes materials to aid in achieving entry of the nucleic acid into the cell, such as a viral particle, liposome, protein coating or the like.
Provided herein are mutated FGF1 proteins that can include an N-terminal deletion, one or more point mutations (such as amino acid substitutions, deletions, additions, or combinations thereof), or combinations of N-terminal deletions and point mutations. Such mutated FGF1 proteins can be part of a chimeric protein, such as a C-terminal portion of FGF21 or 19 (e.g., SEQ ID NO: 86 or 100, respectively), a β-Klotho binding protein (e.g., SEQ ID NOS: 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, and 187), or an FGFR1c binding protein (e.g., see SEQ ID NOS: 188 and 189), or both a β-Klotho binding protein and an FGFR1c binding protein (e.g., linked directly or indirectly to any of SEQ ID NOS: 168, 169, 170 or 171). Thus, when referring to a mutated FGF1 protein(s) herein, such reference also includes reference to mutated FGF1/FGF21, mutated FGF1/FGF19 chimeras, mutated FGF1/β-Klotho-binding chimeras, mutated FGF1/FGF1Rc-binding chimeras, or mutated FGF1/β-Klotho-binding/FGF1Rc-binding chimeras.
Also provided are methods of using FGF1 mutant proteins or FGF1Rc-binding protein multimers (or their nucleic acid coding sequences) to lower glucose, for example to treat a metabolic disease. In some examples such methods include administering a therapeutically effective amount of a mutated mature FGF21 protein or FGF1Rc-binding protein multimer to the mammal, or a nucleic acid molecule encoding the mutated mature FGF21 protein or FGF1Rc-binding protein multimer or a vector comprising the nucleic acid molecule, thereby reducing the blood glucose, treating the one or more metabolic diseases, or combinations thereof. Exemplary metabolic diseases that can be treated with the disclosed methods include but are not limited to: type 2 diabetes, non-type 2 diabetes, type 1 diabetes, polycystic ovary syndrome (PCOS), metabolic syndrome (MetS), obesity, non-alcoholic steatohepatitis (NASH), non-alcoholic fatty liver disease (NAFLD), dyslipidemia (e.g., hyperlipidemia), cardiovascular diseases (e.g., hypertension), latent autoimmune diabetes (LAD), or maturity onset diabetes of the young (MODY).
In some examples, mutations in FGF1 reduce the mitogenicity of mature wild-type FGF1 (e.g., SEQ ID NO: 5), such as a reduction of at least 20%, at least 50%, at least 75% or at least 90%. For example, mutated FGF1 can be mutated to decrease binding affinity for heparin and/or heparan sulfate compared to an FGF1 protein without the modification (e.g., a native or wild-type FGF1 protein). Methods of measuring mitogenicity are known in the art. In one example, the method provided in Example 2 is used.
In some examples, the mutant FGF1 protein is a truncated version of the mature protein (e.g., SEQ ID NO: 5), which can include for example deletion of at least 5, at least 6, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, or at least 20 consecutive N-terminal amino acids, such as the N-terminal 5 to 10, 5 to 13, 5, 6, 7, 8, 9, 10, 11, 12, or 13 amino acids of mature FGF1. In some examples, such an N-terminally deleted FGF1 protein has reduced mitogenic activity as compared to wild-type mature FGF1 protein.
In some examples, one or more of the deleted N-terminal amino acids are replaced with corresponding amino acids from FGF21 (e.g., see SEQ ID NO: 20), such as at least 1, at least 2, at least 3, at least 4, at least 5, at least 10, at least 15, or at least 20 amino acids from FGF21, such as 1-5, 1-4, 2-4, 4-6, 4-9, 3-10, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 corresponding amino acids from FGF21. An example of an FGF1 mutated protein with an N-terminal deletion having four corresponding N-terminal amino acids from FGF21 is shown in SEQ ID NO: 21 and 222. An example of an FGF1 mutated protein with an N-terminal deletion having 16 N-terminal amino acids from FGF21 is shown in SEQ ID NO: 221. One skilled in the art will appreciate that amino acids from other FGFs besides FGF21 can be used, including those having low affinity for FGFR4, including FGF3, FGF5, FGF7, FGF9 and FGF10. The N-terminal residues of FGF1 include an FGFR4 binding site, and FGFR4 signaling is associated with mitogenic activity. In contrast, FGF21 has low affinity for FGFR4. Thus, replacing the FGFR4 binding residues of FGF1 with those from FGF21 can be used to reduce mitogenicity of the resulting FGF1 mutant protein.
In some examples, mutations in FGF1 increase the thermostability of mature or truncated FGF1 (e.g., SEQ ID NO: 5), such as an increase of at least 20%, at least 50%, at least 75% or at least 90% compared to native FGF1. Exemplary mutations that can be used to increase the thermostability of mutated FGF1 include but are not limited to one or more of: K12V, C117V, C117P, C117T, C117S, C117A and P134V (referred to as M1 mutations), L44F, C83T, C83S, C83A C83V, C117V, C117P, C117T, C117S, C117A and F132W (referred to as M2 mutations), and L44F, M67I, L73V, V109L, L111I, C117V, C117P, C117T, C117S, C117A A103G, R119G, R119V, Δ104-106, and Δ120-122 (referred to as M3 deletions), wherein the numbering refers to SEQ ID NO: 5 (e.g., see Xia et al., PLoS One. 7:e48210, 2012). For example, mutated FGF1 can be mutated to increase the thermostability of the protein compared to an FGF1 protein without the modification (e.g., SEQ ID NO: 5). Methods of measuring thermostability are known in the art. In one example, the method provided in Xia et al., PLoS One. 7:e48210, 2012 is used.
In some examples, the mutant FGF1 protein is a mutated version of the mature protein (e.g., SEQ ID NO: 5), such as one containing at least 1, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, at least 20, at least 21, at least 22, at least 23, at least 24 or at least 25 amino acid substitutions, such as 1-20, 1-10, 4-8, 5-25, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, or 37 amino acid substitutions (such as those shown in Table 1). In some examples, the mutant FGF1 protein includes deletion of one or more amino acids, such as deletion of 1-10, 4-8, 5-10, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 amino acid deletions. In some examples, the mutant FGF1 protein includes a combination of amino acid substitutions and deletions, such as at least 1 substitution and at least 1 deletion, such as 1 to 10 substitutions with 1 to 10 deletions.
Exemplary mutations are shown in Table 1 below, with amino acids referenced to either SEQ ID NO: 2 or 5. One skilled in the art will recognize that these mutations can be used singly, or in combination (such as 1-20, 1-10, 4-8, 5-25, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, or 41 of these amino acid substitutions and/or deletions). In addition, such mutant FGF1 proteins are part of a chimeric protein, such as with FGF19, FGF21, a protein that selectively binds to β-Klotho, or a protein that selectively binds to FGFR1c.
In some examples, the mutant FGF1 protein includes mutations at one or more of the following positions: K9, K10, K12, L14, Y15, C16, H21, R35, Q40, L44, L46, S47, E49, Y55, M67, L73, C83, L86, E87, H93, Y94, N95, H102, A103, E104, K105, N106, F108, V109, L111, K112, K113, C117, K118, R119, G120, P121, R122, F132, L133, P134, L135, such as one or more of K9, K10, K12, K112, K113, such as 1 to 5, 2 to 5, 3 to 6, 3 to 8, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 or all 42 of these positions. In one example, K9 and K10 are replaced with DQ (as in the mutated nuclear localization sequence) or with equivalent residues from FGF21 (or another FGF that does not bind to FGFR4) (wherein the numbering refers to SEQ ID NO: 5).
In some examples, the mutant FGF1 protein includes mutations at 1, 2, 3 or 4 of the following positions: Y15, E87, Y94, and N95 (wherein the numbering refers to SEQ ID NO: 5), such as one or more of Y15F, Y15A, Y15V, E87V, E87A, E87S, E87T, N95V, N95A, N95S, N95T, Y94V, Y94F, and Y94A (such as 1, 2, 3 or 4 of these mutations). For example, E87 or N95 can be replaced with a non-charged amino acid. In addition, Y15 and Y94 can be replaced with an amino acid that destabilizes the hydrophobic interactions. In some examples, the mutant FGF1 protein includes mutations on either side of Y15, E87, Y94, and N95, such as one or more of L14, C16, H93, and T96, such as mutations at 1, 2, 3, or 4 of these positions.
In some examples, the mutant FGF1 protein includes mutations at 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 of the following positions: Y15, C16, E87, H93, Y94, and N95 (wherein the numbering refers to SEQ ID NO: 5), such as one or more of Y15F, Y15A, Y15V, E87V, E87A, E87S, E87T, H93A, N95V, N95A, N95S, N95T, Y94V, Y94F, and Y94A (such as 1, 2, 3, 4, 5, 6, 7, 8, 9 or 10 of these mutations).
In some examples, the mutant FGF1 protein includes mutations at one or more of the following positions: C16, C83, and C117 (wherein the numbering refers to SEQ ID NO: 5), such as one or more of C16V, C16A, C16T, C16S, C83T, C83S, C83A C83V, C117V, C117P, C117T, C117S, and C117A (such as 1, 2, or 3 of these mutations).
In some examples, the mutant FGF1 protein includes mutations at only one or two of the following positions: E87, Y94, and N95 (wherein the numbering refers to SEQ ID NO: 5), such as one or two of E87V, E87A, E87S, E87T, Y94V, Y94F, Y94A, N95V, N95A, N95S, and N95T.
In some examples, the mutant FGF1 protein includes mutations at 1, 2, or 3 of the following positions: K12, C83, and C117 (wherein the numbering refers to SEQ ID NO: 5), such as one or more of K12V, K12C, C83T, C83S, C83A, C83V, C117V, C117P, C117T, C117S, and C117A (such as 1, 2, or 3 of these mutations, such as K12V, C83T, and C117V).
In some examples, the mutant FGF1 protein includes one or more of K12V, L46V, R35E, R35V, E87V, N95V, K118N, K118E, C117V, and P134V (wherein the numbering refers to SEQ ID NO: 5). In some examples, the point mutation includes replacing amino acid sequence ILFLPLPV (amino acids 145-152 of SEQ ID NO: 2 and 4) to AAALPLPV (SEQ ID NO: 14), ILALPLPV (SEQ ID NO: 15), ILFAPLPV (SEQ ID NO: 16), or ILFLPAPA (SEQ ID NO: 17). In some examples, such an FGF1 protein with one or more point mutations has reduced mitogenic activity as compared to wild-type mature FGF1 protein. In some examples, the mutant FGF1 protein includes R35E (wherein the numbering refers to SEQ ID NO: 5).
In some examples, the mutant FGF1 protein includes at least 120 consecutive amino acids from amino acids 5-141 of FGF1 (e.g., of SEQ ID NO: 2 or 4), (which in some examples can include further deletion of N-terminal amino acids 1-20 and/or point mutations, such as substitutions, deletions, or additions). In some examples, the mutant FGF1 protein includes at least 120 or at least 130 consecutive amino acids from amino acids 5-141 of FGF1, such as at least 120 consecutive amino acids from amino acids 5-141 of SEQ ID NO: 2 or 4 or at least 120 consecutive amino acids from SEQ ID NO: 5.
In some examples, the mutant FGF1 protein includes both an N-terminal truncation and point mutations. Specific exemplary FGF1 mutant proteins are shown in SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 113, 114, 115, 116, 117, 118, 119, 120, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238. In some examples, the FGF1 mutant includes an N-terminal deletion, but retains a methionine at the N-terminal position. In some examples, the FGF1 mutant is 120-140 or 125-140 amino acids in length.
In some examples, the FGF1 mutant protein is part of a chimeric protein. For example, one end of the mutant FGF1 mutant protein can be joined directly or indirectly to the end of FGF19 or FGF21, such as a C-terminal region of FGF 19 or FGF21. In some examples, the mutated FGF1 portion of the chimera is at the N-terminus of the chimera, and the FGF19 or FGF21 portion is the C-terminus of the chimera. However, this can be reversed, such that the mutated FGF1 portion of the chimera is the C-terminus of the chimera, and the FGF19 or FGF21 portion is the N-terminus of the chimera. For example, at least 10, at least 20, at least 30, at least 40, at least 41, at least 42, at least 43, at least 44, at least 45, at least 46, at least 47, at least 48, at least 49, at least 50 or at least 60 C-terminal amino acids of FGF19 or FGF21 (such as the C-terminal 60, 55, 50, 49, 48, 47, 46, 45, 44, 43, 42, 41, 40, 35, 30, 25, 20, 15 or 10 amino acids) can be part of the chimera. Examples of C-terminal fragments of FGF21 and FGF19 that can be used are shown in SEQ ID NOS: 86 and 100, respectively. In some examples, the mutant FGF1 and FGF21 or FGF19 portion are linked indirectly through the use of a linker, such as one composed of at least 5, at least 10, at least 15 or at least 20 amino acids. In one example the linker is a poly alanine.
In some examples, the FGF1 mutant protein is part of a chimeric protein with a 3-Klotho-binding protein. For example, one end of the mutant FGF1 mutant protein can be joined directly or indirectly to the end of a β-Klotho-binding protein (see for example
In some examples, the FGF1 mutant protein is part of a chimeric protein with an FGFR1c-binding protein. For example, one end of the mutant FGF1 mutant protein can be joined directly or indirectly to the end of an FGFR1c-binding protein. In some examples, the mutated FGF1 portion of the chimera is at the N-terminus of the chimera, and the FGFR1c-binding protein portion is the C-terminus of the chimera (e.g., see
In some examples, the FGF1 mutant protein is part of a chimeric protein with both an FGFR1c-binding protein and a β-Klotho-binding protein, in any order. For example, one end of the mutant FGF1 mutant protein can be joined directly or indirectly to the end of an FGFR1c-binding/β-Klotho-binding or β-Klotho-binding/FGFR1c-binding chimeric protein. In some examples, the mutated FGF1 portion of the chimera is at the N-terminus of the chimera, and the FGFR1c-binding/β-Klotho-binding or β-Klotho-binding/FGFR1c-binding chimeric protein portion is the C-terminus of the chimera (e.g., see
In some examples, the FGF1 mutant protein or chimera including such includes at least 80% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238. Thus, the FGF1 mutant protein can have at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238 (but is not a native FGF1 sequence, such as SEQ ID NO: 5). In some examples, the FGF1 mutant protein includes or consists of SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238. The disclosure encompasses variants of the disclosed FGF1 mutant proteins, such as SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238 having 1 to 8, 2 to 10, 1 to 5, 1 to 6, or 5 to 10 mutations, such as conservative amino acid substitutions.
In some examples, a mutant FGF1/FGF21 chimera protein includes at least 80% sequence identity to SEQ ID NO: 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 219, 221, 222, or 223. Thus, the mutant FGF1/FGF21 chimeric protein can have at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 219, 221, 222, or 223. In some examples, the mutant FGF1/FGF21 chimera protein includes or consists of SEQ ID NO: 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 219, 221, 222, or 223. The disclosure encompasses variants of the disclosed mutant FGF1/FGF21 chimera proteins, such as SEQ ID NO: 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 219, 221, 222, or 223 having 1-8 mutations, such as conservative amino acid substitutions.
In some examples, a mutant FGF1/FGF19 chimera protein includes at least 80% sequence identity to SEQ ID NO: 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 220, or 224. Thus, the mutant FGF1/FGF19 chimeric protein can have at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 220, or 224. In some examples, the mutant FGF1/FGF19 chimera protein includes or consists of any of SEQ ID NOS: 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 220, or 224. The disclosure encompasses variants of the disclosed mutant FGF1/FGF19 chimera proteins, such as SEQ ID NO: 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 220, or 224 having 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 mutations, such as conservative amino acid substitutions.
In some examples, a mutant FGF1/β-Klotho-binding protein chimera includes at least 80% sequence identity to SEQ ID NO: 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, or 187. Thus, the mutant FGF1/β-Klotho chimeric protein can have at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 1173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, or 187. In some examples, the mutant FGF1/β-Klotho chimera protein includes or consists of SEQ ID NO: 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, or 187. The disclosure encompasses variants of the disclosed mutant FGF1/β-Klotho chimera proteins, such as SEQ ID NO: 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, or 187 having 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 mutations, such as conservative amino acid substitutions.
In some examples, a mutant FGF1/FGF1Rc-binding protein chimera includes at least 80% sequence identity to any of SEQ ID NOS: 188-189. Thus, the mutant FGF1/FGF1Rc chimeric protein can have at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 188 or 189. In some examples, the mutant FGF1/FGF1Rc chimera protein includes or consists of any of SEQ ID NOS: 188-189. The disclosure encompasses variants of the disclosed mutant FGF1/FGF1Rc chimera proteins, such as SEQ ID NO: 188 or 189 having 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 mutations, such as conservative amino acid substitutions.
In one example the FGFR1c-binding/β-Klotho-binding or β-Klotho-binding/FGFR1c-binding protein portion of a chimera includes at least 80% sequence identity to SEQ ID NO: 168, 169, 170 or 171, such as at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 168, 169, 170 or 171.
In one example an FGFR1c-binding protein multimer includes at least one monomer having 80% sequence identity to the FGFR1c-binding portion of SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, or 170, such as at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to the FGFR1c portion of SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, or 170. In one example an FGFR1c-binding protein dimer includes at least 80% sequence identity SEQ ID NO: 190, such as at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to SEQ ID NO: 190.
Also provided are isolated nucleic acid molecules encoding the disclosed mutated FGF1 proteins and chimeras, such as a nucleic acid molecule encoding a protein having at least 80%, at least 85%, at least 90%, at least 95%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, or 238 (but is not a native FGF1 sequence). One exemplary coding sequence is shown in SEQ ID NO: 18; thus, the disclosure provides sequences having at least 80%, at least 85%, at least 90%, at least 95%, at least 98%, or at least 99% sequence identity to any of SEQ ID NO: 18. Vectors and cells that include such nucleic acid molecules are also provided. For example, such nucleic acid molecules can be expressed in a host cell, such as a bacterium or yeast cell (e.g., E. coli), thereby permitting expression of the mutated FGF1 protein. The resulting mutated FGF1 protein can be purified from the cell.
Methods of using the disclosed mutated FGF1 proteins and chimeras (or nucleic acid molecules encoding such), as well as the FGFR1c-binding protein multimers, are provided. As discussed herein, the mutated mature FGF1 protein can include a deletion of at least six contiguous N-terminal amino acids, at least one point mutation, or combinations thereof. For example, such methods include administering a therapeutically effective amount of a disclosed mutated FGF1 protein or chimeric protein including the mutant FGF1 mutant protein, or FGFR1c-binding protein multimer, (such as at least 0.01, at least 0.1 mg/kg, or at least 0.5 mg/kg) (or nucleic acid molecules encoding such) to reduce blood glucose in a mammal, such as a decrease of at least 5%, at least 10%, at least 25% or at least 50%, for example as compared to administration of no mutant FGF1 mutant protein or FGFR1c-binding protein multimer (e.g., administration of PBS).
In one example, the method is a method of reducing fed and fasting blood glucose, improving insulin sensitivity and glucose tolerance, reducing systemic chronic inflammation, ameliorating hepatic steatosis in a mammal, reducing triglycerides, decreasing insulin resistance, reducing hyperinsulinemia, increasing glucose tolerance, reducing hyperglycemia, reducing food intake, or combinations thereof. Such a method can include administering a therapeutically effective amount of a disclosed mutated FGF1 protein or chimeric protein including the mutant FGF1 mutant protein, or FGFR1c-binding protein multimer, (such as at least 0.5 mg/kg) (or nucleic acid molecules encoding such) to reduce fed and fasting blood glucose, improve insulin sensitivity and glucose tolerance, reduce systemic chronic inflammation, ameliorate hepatic steatosis in a mammal, reduce food intake, or combinations thereof.
In one example, the method is a method of treating a metabolic disease (such as metabolic syndrome, diabetes, or obesity) in a mammal. Such a method can include administering a therapeutically effective amount of a disclosed mutated FGF1 protein or chimeric protein including the mutant FGF1 mutant protein, or FGFR1c-binding protein multimer, (such as at least 0.5 mg/kg) (or nucleic acid molecules encoding such) to treat the metabolic disease.
In some examples, the mammal, such as a human, cat or dog, has diabetes. Methods of administration are routine, and can include subcutaneous, intraperitoneal, intramuscular, or intravenous injection.
In some examples, use of the FGF1 mutants or chimeric proteins including a mutant FGF1 mutant protein, or FGFR1c-binding protein multimer, disclosed herein does not lead to (or significantly reduces, such as a reduction of at least 20%, at least 50%, at least 75%, or at least 90%) the adverse side effects observed with thiazolidinediones (TZDs) therapeutic insulin sensitizers, including weight gain, increased liver steatosis and bone fractures (e.g., reduced affects on bone mineral density, trabecular bone architecture and cortical bone thickness).
Provided are methods of reducing fed and fasting blood glucose, improving insulin sensitivity and glucose tolerance, reducing systemic chronic inflammation, ameliorating hepatic steatosis, reducing food intake, or combinations thereof, in a mammal. Such methods can include administering a therapeutically effective amount of a FGF1 mutant and/or FGFR1c-binding protein multimer disclosed herein, including those that further include a β-Klotho-binding peptide and/or FGFR1c-binding peptide, to the mammal, or a nucleic acid molecule encoding the FGF1 mutant or multimer or a vector comprising the nucleic acid molecule, thereby reducing fed and fasting blood glucose, improving insulin sensitivity and glucose tolerance, reducing systemic chronic inflammation, ameliorating hepatic steatosis, reduce one or more non-HDL lipid levels, reduce food intake, or combinations thereof, in a mammal. In some examples, the fed and fasting blood glucose is reduced in the treated subject by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding protein multimer. In some examples, insulin sensitivity and glucose tolerance is increased in the treated subject by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding protein multimer. In some examples, systemic chronic inflammation is reduced in the treated subject by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding protein multimer. In some examples, hepatic steatosis is reduced in the treated subject by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding protein multimer. In some examples, one or more lipids (such as a non-HDL, for example IDL, LDL and/or VLDL) are reduced in the treated subject by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding multimer In some examples, triglyceride and or cholesterol levels are reduced with the FGF1 mutant and/or FGFR1c-binding protein multimer by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding protein multimer. In some examples, the amount of food intake is reduced in the treated subject by at least 10%, at least 20%, at least 30%, at least 50%, at least 75%, or at least 90% as compared to an absence of administration of the FGF1 mutant and/or FGFR1c-binding protein multimer (such as within 12 hours, within 24 hours, or within 48 hours of the treatment, such as within 12 to 24 hours, within 12 to 36 hours, or within 24 to 48 hours). In some examples, combinations of these reductions are achieved.
The present disclosure provides mutated FGF1 proteins that can include an N-terminal deletion, one or more point mutations (such as amino acid substitutions, deletions, additions, or combinations thereof), or combinations of N-terminal deletions and point mutations. Such proteins and corresponding coding sequences can be used in the methods provided herein. In some examples, the disclosed FGF1 mutant proteins have reduced mitogenicity compared to mature native FGF1 (e.g., SEQ ID NO: 5), such as a reduction of at least 20%, at least 50%, at least 75% or at least 90%. For example, mutated FGF1 can be mutated to decrease binding affinity for heparin and/or heparan sulfate compared to a native FGF1 protein without the modification. Methods of measuring mitogenicity are known in the art.
In some examples, the mutant FGF1 protein is a truncated version of the mature protein (e.g., SEQ ID NO: 5), which can include for example deletion of at least 5, at least 6, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, or at least 20 consecutive N-terminal amino acids. Thus, in some examples, the mutant FGF1 protein is a truncated version of the mature protein (e.g., SEQ ID NO: 5), such a deletion of the N-terminal 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 amino acids shown in SEQ ID NO: 5. Examples of N-terminally truncated FGF1 proteins are shown in SEQ ID NOS: 6, 7, 8, 9, 21, 24, 25, 26, 27, 32, 33, 34, 35, 36, 37, 38, 39, 44, 45, 46, 47, 48, 49, 50, 51, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 71, 72, 74, 75, 76, 77, 79, 80, 81, 82, 194, 195, 197, 198, 202, 203, 205, 206, 214, 215, 216, 217, 221, 222, 225, 228, 232, and 238. In some examples, the FGF1 mutant includes an N-terminal deletion, but retains a methionine at the N-terminal position. In some examples, such an N-terminally deleted FGF1 protein has reduced mitogenic activity as compared to wild-type mature FGF1 protein.
In some examples, one or more of the deleted N-terminal amino acids are replaced with corresponding amino acids from FGF21 (e.g., see SEQ ID NO: 20), such as at least 1, at least 2, at least 3, at least 4, at least 5, at least 10, at least 15, or at least 20 amino acids from FGF21, such as 1-5, 1-4, 2-4, 4-6, 4-9, 3-10, 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 corresponding amino acids from FGF21. An example of an FGF1 mutated protein with an N-terminal deletion having four corresponding N-terminal amino acids from FGF21 is shown in SEQ ID NO: 21. The N-terminal residues of FGF1 include an FGFR4 binding site, and FGFR4 signaling is associated with mitogenic activity. In contrast, FGF21 has low affinity for FGFR4. Thus, replacing the FGFR4 binding residues of FGF1 with those from FGF21 (or from another FGF having low affinity for FGFR4, including FGF3, FGF5, FGF7, FGF9 and FGF10) can be used to reduce mitogenicity of the resulting FGF1 mutant protein.
Thus, in some examples, the mutant FGF1 protein includes at least 120 consecutive amino acids from amino acids 5-141 or 5-155 of FGF1 (e.g., of SEQ ID NO: 2 or 4), (which in some examples can include further deletion of N-terminal amino acids 1-20 and/or point mutations, such as substitutions, deletions, or additions). In some examples, the mutant FGF1 protein includes at least 120 consecutive amino acids from amino acids 1-140 of FGF1 (e.g., of SEQ ID NO: 5), (which in some examples can include further deletion of N-terminal amino acids 1-20 and/or point mutations, such as substitutions, deletions, or additions). Thus, in some examples, the mutant FGF1 protein includes at least 120 consecutive amino acids from amino acids 5-141 of FGF1, such as at least 120, at least 121, at least 122, at least 123, at least 124, at least 125, at least 126, at least 127, at least 128, at least 129, at least 130, at least 131, at least 132, at least 133, at least 134, at least 135, at least 136, at least 137, at least 138, at least 139, or at least 140 consecutive amino acids from amino acids 5-141 of SEQ ID NO: 2 or 4 (such as 120-130, 120-135, 130-135, 130-140, or 120-140 consecutive amino acids from amino acids 5-141 of SEQ ID NO: 2 or 4). In some examples, the mutant FGF1 protein includes at least 120 or at least 130 consecutive amino acids from amino acids 5-141 of FGF1, such as at least 120 consecutive amino acids from amino acids 5-141 of SEQ ID NO: 2 or 4 or at least 120 consecutive amino acids from SEQ ID NO: 5. Thus, in some examples, the mutant FGF1 protein includes at least 120, at least 121, at least 122, at least 123, at least 124, at least 125, at least 126, at least 127, at least 128, at least 129, at least 130, at least 131, at least 132, at least 133, at least 134, at least 135, at least 136, at least 137, at least 138, at least 139, or at least 140 consecutive amino acids from SEQ ID NO: 5 (such as 120-130, 120-135, or 120-140 consecutive amino acids from SEQ ID NO: 5). Examples of least 120 consecutive amino acids from amino acids 5 to 141 of FGF1 that can be used to generate a mutant FGF1 protein includes but are not limited to amino acids 4 to 140 of SEQ ID NO: 5 and the protein sequence shown in any of SEQ ID NOs: 6, 7, 8, and 9.
In some examples, the mutant FGF1 protein is a mutated version of the mature protein (e.g., SEQ ID NO: 5), or a N-terminal truncation of the mature protein (e.g., SEQ ID NOS: 7, 8, 9), such as one containing at least 1, at least 4, at least 5, at least 6, at least 7, at least 8, at least 9, at least 10, at least 11, at least 12, at least 13, at least 14, at least 15, at least 16, at least 17, at least 18, at least 19, or at least 20 amino acid substitutions, such as 1-20, 1-10, 4-8, 5-12, 5-10, 5-25, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, or 15 amino acid substitutions. For example, point mutations can be introduced into an FGF1 sequence to decrease mitogenicity, increase stability, decrease binding affinity for heparin and/or heparan sulfate (compared to the portion of a native FGF1 protein without the modification), or combinations thereof. Specific exemplary point mutations that can be used are shown above in Table 1, and exemplary combinations are provided in
In some examples, the mutant FGF1 protein includes mutations (such as a substitution or deletion) at one or more of the following positions K9, K10, K12, L14, Y15, C16, H21, R35, Q40, L44, L46, S47, E49, Y55, M67, L73, C83, L86, E87, H93, Y94, N95, H102, A103, E104, K105, N106, F108, V109, L111, K112, K113, C117, K118, R119, G120, P121, R122, F132, L133, P134, L135, such as one or more of K9, K10, K12, K112, K113, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41 or all 42 of these positions. In some examples the mutant FGF1 protein has as one or more of K9T, K10T, K12V, L14A, Y15F, Y15A, Y15V, C16V, C16A, C16T, C16S, H21Y, R35E, R35V, Q40P, L44F, L46V, S47I, E49Q, E49A, Y55F, Y55S, Y55A, M67I, L73V, C83T, C83S, C83A C83V, E87V, E87A, E87S, E87T, H93G, H93A, Y94V, Y94F, Y94A, N95V, N95A, N95S, N95T, H102Y, A103G, Δ104-106, F108Y, V109L, L111I, K112D, K112E, K112Q, K113Q, K113E, K113D, C117V, C117P, C117T, C117S, C117A, K118N, K118E, K118V, R119G, R119V, R119E, Δ120-122, F132W, L133A, L133S, P134V, L135A, L135S, (wherein the numbering refers to SEQ ID NO: 5), such as 1 to 5, 1 to 10, 2 to 5, 2 to 10, 2 to 20, 5 to 10, 5 to 40, or 5 to 20 of these mutations, such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 of these mutations.
In some examples, the mutant FGF1 protein includes one or more (such as 2, 3, 4, 5 or 6) of K12V, R35E, R35V, L46V, E87V, N95V, C117V/A, K118N, K118E/V, and P134V (wherein the numbering refers to SEQ ID NO: 5). In some examples, the point mutation includes replacing amino acid sequence ILFLPLPV (amino acids 145-152 of SEQ ID NO: 2 and 4) to AAALPLPV (SEQ ID NO: 14), ILALPLPV (SEQ ID NO: 15), ILFAPLPV (SEQ ID NO: 16), or ILFLPAPA (SEQ ID NO: 17). In some examples, such an FGF1 protein with one or more point mutations has reduced mitogenic activity as compared to wild-type mature FGF1 protein. In some examples, the mutant FGF1 protein includes R35E, (wherein the numbering refers to SEQ ID NO: 5). Examples of FGF1 mutant proteins containing point mutations include but are not limited to the protein sequence shown in SEQ ID NOS: 10, 11, 12, 13, 22, 23, 28, 29, 30, 31, 40, 41, 42, 43, 42, 53, 54, 55, 56, 67, 68, 69, 70, 73, 78, 83, 84, 113, 114, 115, 116, 117, 118, 119, 120, 191, 192, 193, 196, 199, 200, 201, 204, 207, 208, 209, 210, 211, 212, 213, 218, 226, 227, 229, 230, 231, 232, 233, 234, 235, 236, and 237. In some examples, mutations in FGF1 increase the thermostability of mature or truncated native FGF1. For example, mutations can be made at one or more of the following positions. Exemplary mutations that can be used to increase the thermostability of mutated FGF1 include but are not limited to one or more of: K12, C117, P134, L44, C83, F132, M67, L73, V109, L111, A103, R119, Δ104-106, and Δ120-122, Q40, H93, S47, wherein the numbering refers to SEQ ID NO: 5 (e.g., see Xia et al., PLoS One. 7:e48210, 2012). In some examples, thermostability of FGF1 is increased by using one or more of the following mutations: Q40P and S47I or Q40P, S47I, and H93G (or any other combination of these mutations).
In some examples, the FGF1 mutant protein is part of a chimeric protein. For example, any mutant FGF1 protein provided herein can be joined directly or indirectly to the end of a β-Klotho-binding protein, an FGFR1c binding protein, both a β-Klotho-binding protein and an FGFR1c binding protein, FGF19, or FGF21, such as a C-terminal region of FGF 19 or FGF21. For example, at least 10, at least 20, at least 30, at least 40, at least 41, at least 42, at least 43, at least 44, at least 45, at least 46, at least 47, at least 48, at least 49, at least 50 or at least 60 C-terminal amino acids of FGF19 or FGF21 (such as the C-terminal 60, 55, 50, 49, 48, 47, 46, 45, 44, 43, 42, 41, 40, 35, 30, 25, 20, 15 or 10 amino acids) can be part of the chimera. Examples of C-terminal fragments of FGF21 and FGF19 that can be used are shown in SEQ ID NOS: 86 and 100, respectively. Examples of β-Klotho-binding proteins that can be used are shown in SEQ ID NOS: 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145 and 146. Examples of FGFR1c-binding proteins that can be used are shown in SEQ ID NOS: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, and 167. Examples of β-Klotho-binding/FGFR1c-binding protein chimeras that can be directly or indirectly attached to a mutant FGF1 protein are shown in SEQ ID NOS: 168, 169, 170, and 171.
In some examples, the mutant FGF1 protein includes both an N-terminal truncation and point mutations. Specific exemplary FGF1 mutant proteins are shown in SEQ ID NOS: 6-13, 21-84, 113-120, 191-218 and 225-238. In some examples, the FGF1 mutant protein includes at least 80% sequence identity to any of SEQ ID NOS: 6-13, 21-84, 113-120, 191-218 and 225-238. Thus, the FGF1 mutant protein can have at least 90%, at least 95%, at least 96%, at least 97%, at least 98% or at least 99% sequence identity to any of SEQ ID NOS: 6-13, 21-84, 113-120, 191-218 and 225-238. In some examples, the FGF1 mutant protein includes or consists of any of SEQ ID NOS: 6-13, 21-84, 113-120, 191-218 and 225-238. The disclosure encompasses variants of the disclosed FGF1 mutant proteins, such as any of SEQ ID NOS: 6-13, 21-84, and 113-120, 191-218 and 225-238 having 1 to 20, 1 to 15, 1 to 10, 1 to 8, 2 to 10, 1 to 5, 1 to 6, 2 to 12, 3 to 12, 5 to 12, or 5 to 10 mutations, such as conservative amino acid substitutions. Such mutant FGF1 proteins can be used to generate an FGF1 mutant chimera.
In some examples, the mutant FGF1 protein has at its N-terminus a methionine. In some examples, the mutant FGF1 protein is at least 120 amino acids in length, such as at least 125, at least 130, at least 135, at least 140, at least 145, at least 150, at least 155, at least 160, or at least 175 amino acids in length, such as 120-160, 125-160, 130-160, 150-160, 130-200, 130-180, 130-170, or 120-160 amino acids in length.
Exemplary N-terminally truncated FGF1 sequences and FGF1 point mutations that can be used to generate an FGF1 mutant protein are shown in Tables 1 and 2 (as well as those provided in any of SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238). One skilled in the art will appreciate that any N-terminal truncation in Table 2 (as well as those provided in any of SEQ ID NOS: 6, 7, 8, 9, 21, 24, 25, 26, 27, 32, 33, 34, 35, 36, 37, 38, 39, 44, 45, 46, 47, 48, 49, 50, 51, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 71, 72, 74, 75, 76, 77, 79, 80, 81, 82, 194, 195, 197, 198, 202, 203, 205, 206, 214, 215, 216, 217, 221, 222, 225, 228, 232, and 238) can be combined with any FGF1 point mutation in Table 1 or Table 2, to generate an FGF1 mutant protein, and that such an FGF1 mutant protein can be used directly or be used as part of a mutant FGF1/β-Klotho-binding protein chimera, mutant FGF1/FGFR1c-binding protein chimera, mutant FGF1/β-Klotho-binding protein/FGFR1c-binding protein chimera, mutant FGF1/FGF21 or mutant FGF1/FGF19 chimera. In addition, mutations can be made to the sequences shown in the Table, such as one or more of the mutations discussed herein (such as 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 amino acid substitutions, such as conservative amino acid substitutions, deletions, or additions).
GGQVKPKLLYCSNG GHFLRILPDG
Exemplary mutant FGF1 proteins are provided in SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 113, 114, 115, 116, 117, 118, 119, 120, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238, mutant FGF1/FGF21 chimeras in SEQ ID NOS: 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 219, 221, 222 and 223, mutant FGF1/FGF19 chimeras in SEQ ID NOS: 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 220 and 224, mutant FGF1/β-Klotho-binding protein chimeras in SEQ ID NOS: 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, and 187, and mutant FGF1/FGFR1c-binding protein chimeras in SEQ ID NOS: 188 and 189. One skilled in the art will recognize that minor variations can be made to these sequences, without adversely affecting the function of the protein (such as its ability to reduce blood glucose). For example, variants of the mutant FGF1 proteins include those having at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238 (but are not a native FGF1 sequence, e.g., SEQ ID NO: 5), but retain the ability to treat a metabolic disease, or decrease blood glucose in a mammal (such as a mammal with type II diabetes). Thus, variants of SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238 retaining at least 90%, at least 95%, at least 96%, at least 97%, at least 98%, or at least 99% sequence identity are of use in the disclosed methods.
Mature forms of FGF1 (such as SEQ ID NO: 2 or 4) can be mutated to control (e.g., reduce) the mitogenicity of the protein (for example by mutating the nuclear localization sequence (NLS) or the heparan sulfate binding region or both) and to provide glucose-lowering ability to the protein. Mutations can also be introduced into a wild-type mature FGF1 sequence that affects the stability and receptor binding selectivity of the protein.
Exemplary full-length FGF1 proteins are shown in SEQ ID NOS: 2 (human) and 4 (mouse). In some examples, FGF1 includes SEQ ID NO: 2 or 4, but without the N-terminal methionine (thus resulting in a 154 aa FGF1 protein). In addition, the mature/active form of FGF1 is one where a portion of the N-terminus is removed, such as the N-terminal 15, 16, 20, or 21 amino acids from SEQ ID NO: 2 or 4. Thus, in some examples the active form of FGF1 comprises or consists of amino acids 16-155 or 22-155 of SEQ ID NO: 2 or 4 (e.g., see SEQ ID NO: 5). In some examples, the mature form of FGF1 that can be mutated includes SEQ ID NO: 5 with a methionine added to the N-terminus (wherein such a sequence can be mutated as discussed herein). Thus, the mutated mature FGF1 protein can include an N-terminal truncation.
Mutations can be introduced into a wild-type FGF1 (such as SEQ ID NO: 2, 4, or 5). In some examples, multiple types of mutations disclosed herein are made to the FGF1 protein. Although mutations below are noted by a particular amino acid for example in SEQ ID NO: 2, 4 or 5, one skilled in the art will appreciate that the corresponding amino acid can be mutated in any FGF1 sequence. For example, Q40 of SEQ ID NO: 5 corresponds to Q55 of SEQ ID NO: 2 and 4.
In one example, mutations are made to the N-terminal region of FGF1 (such as SEQ ID NO: 2, 4 or 5), such as deletion of the first 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, or 30 amino acids of SEQ ID NO: 2 or 4 (such as deletion of at least the first 14 amino acids of SEQ ID NO: 2 or 4, such as deletion of at least the first 15, at least 16, at least 20, at least 25, or at least 29 amino acids of SEQ ID NO: 2 or 4), deletion of the first 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, or 20 amino acids of SEQ ID NO: 5 (e.g., see SEQ ID NOS: 7, 8 and 9 and
Mutations can be made to FGF1 (such as SEQ ID NO: 2, 4 or 5) to reduce its mitogenic activity. In some examples, such mutations reduce mitogenic activity by at least 50%, at least 60%, at least 70%, at least 75%, at least 80%, at least 90%, at least 92%, at least 95%, at least 98%, at least 99%, or even complete elimination of detectable mitogenic activity, as compared to a native FGF1 protein without the mutation. Methods of measuring mitogenic activity are known in the art, such as thymidine incorporation into DNA in serum-starved cells (e.g., NIH 3T3 cells) stimulated with the mutated FGF1, methylthiazoletetrazolium (MTT) assay (for example by stimulating serum-starved cells with mutated FGF1 for 24 hr then measuring viable cells), cell number quantification or BrdU incorporation. In some examples, the assay provided by Fu et al., World J. Gastroenterol. 10:3590-6, 2004; Klingenberg et al., J. Biol. Chem. 274:18081-6, 1999; Shen et al., Protein Expr Purif 81:119-25, 2011, or Zou et al., Chin. Med. J. 121:424-429, 2008 is used to measure mitogenic activity. Examples of such mutations include, but are not limited to K12V, R35E, L46V, E87V, N95V, K12V/N95V (e.g., see SEQ ID NO: 10, which can also include a methionine on its N-terminus), and Lys12Val/Pro134Val, Lys12Val/Leu46Val/Glu87Val/Asn95Val/Pro134Val (e.g., see SEQ ID NO: 11, which can also include a methionine on its N-terminus) (wherein the numbering refers to the sequence shown SEQ ID NO: 5). In some examples, a portion of contiguous N-terminal residues are removed, such as amino acids 1-9 of SEQ ID NO: 5, to produce a non-mitogenic form of FGF1. An example is shown in SEQ ID NO: 9.
Mutations that reduce the heparan binding affinity (such as a reduction of at least 10%, at least 20%, at least 50%, or at least 75%, e.g., as compared to a native FGF1 protein without the mutation), can also be used to reduce mitogenic activity, for example by substituting heparan binding residues from a paracrine FGFs into FGF1. In some examples, mitogenicity is reduced or eliminated by deleting the N-terminal region of FGF1 (such as the region that binds FGF4) and replacing some or all of the amino acids deleted with corresponding residues from FGF21.
Mutations can also be introduced into one or both nuclear localization sites (NLS1, amino acids 24-27 of SEQ ID NO: 2 and NLS2, amino acids 115-128 of SEQ ID NO: 4) of FGF1, for example to reduce mitogenicity, as compared to a native FGF1 protein without the mutation. Examples of NLS mutations that can be made to FGF1 include but are not limited to: deleting or mutating all or a part of NLS1 (such as deleting or mutating the lysines), deleting or mutating the lysines in NLS2 such as 115KK . . . 127KK . . . , or combinations thereof (wherein the numbering refers to the sequence shown SEQ ID NO: 2). For example, one or more of 24K, 25K, 27K, 115K, 127K or 128K (wherein the numbering refers to the sequence shown SEQ ID NO: 2) or can be mutated (for example changed to an alanine or deleted). Particular examples of such mutations that can be made to the heparan binding site in the NLS2 (KKN . . . KR) domain are shown in SEQ ID NOS: 12 and 13 (K118N or K118E, respectively, wherein numbering refers to SEQ ID NO: 5).
Mutations can be introduced into the phosphorylation site of FGF1, for example to create a constitutively active or inactive mutant to affect nuclear signaling.
In some examples, mutations are introduced into the FGF1 nuclear export sequence, for example to decrease the amount of FGF1 in the nucleus and reduce its mitogenicity as measured by thymidine incorporation assays in cultured cells (e.g., see Nilsen et al., J. Biol. Chem. 282(36):26245-56, 2007). Mutations to the nuclear export sequence decrease FGF1-induced proliferation (e.g., see Nilsen et al., J. Biol. Chem. 282(36):26245-56, 2007). Methods of measuring FGF1 degradation are known in the art, such as measuring [35S]Methionine-labeled FGF1 or immunoblotting for steady-state levels of FGF1 in the presence or absence of proteasome inhibitors. In one example, the assay provided by Nilsen et al., J. Biol. Chem. 282(36):26245-56, 2007 or Zakrzewska et al., J. Biol. Chem. 284:25388-403, 2009 is used to measure FGF1 degradation.
The FGF1 nuclear export sequence includes amino acids 145-152 of SEQ ID NO: 2 and 4 or amino acids 130-137 of SEQ ID NO: 5. Examples of FGF1 nuclear export sequence mutations that can be made to include but are not limited to changing the sequence ILFLPLPV (amino acids 145-152 of SEQ ID NO: 2 and 4) to AAALPLPV (SEQ ID NO: 14), ILALPLPV (SEQ ID NO: 15), ILFAPLPV (SEQ ID NO: 16), or ILFLPAPA (SEQ ID NO: 17).
In one example, mutations are introduced to improve stability of FGF1. In some examples, the sequence NYKKPKL (amino acids 22-28 of SEQ ID NO: 2) is not altered, and in some examples ensures for structural integrity of FGF1 and increases interaction with the FGF1 receptor. Methods of measuring FGF1 stability are known in the art, such as measuring denaturation of FGF1 or mutants by fluorescence and circular dichroism in the absence and presence of a 5-fold molar excess of heparin in the presence of 1.5 M urea or isothermal equilibrium denaturation by guanidine hydrochloride. In one example, the assay provided by Dubey et al., J. Mol. Biol. 371:256-268, 2007 is used to measure FGF1 stability. Examples of mutations that can be used to increase stability of the protein include, but are not limited to, one or more of Q40P, S47I and H93G (wherein the numbering refers to the sequence shown SEQ ID NO: 5).
In one example, mutations are introduced to improve the thermostability of FGF1, such as an increase of at least 10%, at least 20%, at least 50%, or at least 75%, as compared to a native FGF1 protein without the mutation (e.g., see Xia et al., PLoS One. 2012; 7(11):e48210 and Zakrzewska, J Biol Chem. 284:25388-25403, 2009). In one example, mutations are introduced to increase protease resistance of FGF1 (e.g., see Kobielak et al., Protein Pept Lett. 21(5):434-43, 2014). Other mutations that can be made to FGF1 include those mutations provided in Lin et al., J Biol Chem. 271(10):5305-8, 1996).
In some examples, the mutant FGF1 protein or chimera is PEGylated at one or more positions, such as at N95 (for example see methods of Niu et al., J. Chromatog. 1327:66-72, 2014, herein incorporated by reference). Pegylation consists of covalently linking a polyethylene glycol group to surface residues and/or the N-terminal amino group. N95 is known to be involved in receptor binding, thus is on the surface of the folded protein. As mutations to surface exposed residues could potentially generate immunogenic sequences, pegylation is an alternative method to abrogate a specific interaction. Pegylation is an option for any surface exposed site implicated in the receptor binding and/or proteolytic degradation. Pegylation can “cover” functional amino acids, e.g. N95, as well as increase serum stability.
In some examples, the mutant FGF1 protein or chimera includes an immunoglobin FC domain (for example see Czajkowsky et al., EMBO Mol. Med. 4:1015-28, 2012, herein incorporated by reference). The conserved FC fragment of an antibody can be incorporated either n-terminal or c-terminal of the mutant FGF1 protein or chimera, and can enhance stability of the protein and therefore serum half-life. The FC domain can also be used as a means to purify the proteins on protein A or Protein G sepharose beads. This makes the FGF1 mutants having heparin binding mutations easier to purify.
Variant FGF1 proteins, including variants of the sequences shown in Tables 1 and 2, and variants of SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237, and 238, can contain one or more mutations, such as a single insertion, a single deletion, a single substitution. In some examples, the mutant FGF1 protein includes 1-20 insertions, 1-20 deletions, 1-20 substitutions, or any combination thereof (e.g., single insertion together with 1-19 substitutions). In some examples, the disclosure provides a variant of any disclosed mutant FGF1 protein having 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 amino acid changes. In some examples, SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, includes 1-8 insertions, 1-15 deletions, 1-10 substitutions, or any combination thereof (e.g., 1-15, 1-4, or 1-5 amino acid deletions together with 1-10, 1-5 or 1-7 amino acid substitutions). In some examples, the disclosure provides a variant of any of SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238, having 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29 or 30 amino acid changes. In one example, such variant peptides are produced by manipulating the nucleotide sequence encoding a peptide using standard procedures such as site-directed mutagenesis or PCR. Such variants can also be chemically synthesized. Similar changes can be made to the FGFR1c dimer of SEQ ID NO: 190 (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19 or 20 amino acid changes).
One type of modification or mutation includes the substitution of amino acids for amino acid residues having a similar biochemical property, that is, a conservative substitution (such as 1-4, 1-8, 1-10, or 1-20 conservative substitutions). Typically, conservative substitutions have little to no impact on the activity of a resulting peptide. For example, a conservative substitution is an amino acid substitution in SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, that does not substantially affect the ability of the peptide to decrease blood glucose in a mammal. An alanine scan can be used to identify which amino acid residues in a mutant FGF1 protein, such as SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, can tolerate an amino acid substitution. In one example, the blood glucose lowering activity of FGF1, or any of SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, is not altered by more than 25%, for example not more than 20%, for example not more than 10%, when an alanine, or other conservative amino acid, is substituted for 1-4, 1-8, 1-10, or 1-20 native amino acids. Examples of amino acids which may be substituted for an original amino acid in a protein and which are regarded as conservative substitutions include: Ser for Ala; Lys for Arg; Gln or His for Asn; Glu for Asp; Ser for Cys; Asn for Gln; Asp for Glu; Pro for Gly; Asn or Gln for His; Leu or Val for Ile; Ile or Val for Leu; Arg or Gln for Lys; Leu or Be for Met; Met, Leu or Tyr for Phe; Thr for Ser; Ser for Thr; Tyr for Trp; Trp or Phe for Tyr; and Ile or Leu for Val.
More substantial changes can be made by using substitutions that are less conservative, e.g., selecting residues that differ more significantly in their effect on maintaining: (a) the structure of the polypeptide backbone in the area of the substitution, for example, as a sheet or helical conformation; (b) the charge or hydrophobicity of the polypeptide at the target site; or (c) the bulk of the side chain. The substitutions that in general are expected to produce the greatest changes in polypeptide function are those in which: (a) a hydrophilic residue, e.g., serine or threonine, is substituted for (or by) a hydrophobic residue, e.g., leucine, isoleucine, phenylalanine, valine or alanine; (b) a cysteine or proline is substituted for (or by) any other residue; (c) a residue having an electropositive side chain, e.g., lysine, arginine, or histidine, is substituted for (or by) an electronegative residue, e.g., glutamic acid or aspartic acid; or (d) a residue having a bulky side chain, e.g., phenylalanine, is substituted for (or by) one not having a side chain, e.g., glycine. The effects of these amino acid substitutions (or other deletions or additions) can be assessed by analyzing the function of the mutant FGF1 protein, such as any of SEQ ID NOS: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, by analyzing the ability of the variant protein to decrease blood glucose in a mammal.
Isolation and purification of recombinantly expressed mutated FGF1 proteins can be carried out by conventional means, such as preparative chromatography and immunological separations. Once expressed, mutated FGF1 proteins can be purified according to standard procedures of the art, including ammonium sulfate precipitation, affinity columns, column chromatography, and the like (see, generally, R. Scopes, Protein Purification, Springer-Verlag, N.Y., 1982). Substantially pure compositions of at least about 90 to 95% homogeneity are disclosed herein, and 98 to 99% or more homogeneity can be used for pharmaceutical purposes.
In addition to recombinant methods, mutated FGF1 proteins disclosed herein can also be constructed in whole or in part using standard peptide synthesis. In one example, mutated FGF1 proteins are synthesized by condensation of the amino and carboxyl termini of shorter fragments. Methods of forming peptide bonds by activation of a carboxyl terminal end (such as by the use of the coupling reagent N, N′-dicylohexylcarbodimide) are well known in the art.
Nucleic acid molecules encoding a mutated FGF1 protein are encompassed by this disclosure. Based on the genetic code, nucleic acid sequences coding for any mutated FGF1 sequence, such as those generated using the sequences shown in Tables 1 and 2, can be routinely generated. Similarly, mutant FGF1/β-Klotho-binding, mutant FGF1/FGFR1c-binding, mutant FGF1/β-Klotho-binding/FGFR1c-binding, mutant FGF1/FGF21 or mutant FGF1/FGF19 chimeras can be generated using routine methods based on the amino acid sequences provided herein. In some examples, such a sequence is optimized for expression in a host cell, such as a host cell used to express the mutant FGF1 protein. Also provided are nucleic acid molecules encoding an FGFR1c-binding protein multimer, such as those encoding multimers of any of SEQ ID NOS: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or 190, as well as cells and vectors including such nucleic acids.
In one example, a nucleic acid sequence codes for a mutant FGF1 protein (or chimera including such protein) having at least 60%, at least 70%, at least 75%, at least 80%, at least 90%, at least 92%, at least 95%, at least 96%, at least 97%, at least 99% or at least 99% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238, can readily be produced by one of skill in the art, using the amino acid sequences provided herein, and the genetic code. In addition, one of skill can readily construct a variety of clones containing functionally equivalent nucleic acids, such as nucleic acids which differ in sequence but which encode the same mutant FGF1 protein sequence. In one example, a mutant FGF1 nucleic acid sequence has at least 70%, at least 80%, at least 85%, at least 90%, at least 92%, at least 95%, at least 98%, or at least 99% sequence identity to SEQ ID NO: 18.
In one example, a nucleic acid sequence codes for a FGFR1c-binding protein multimer made using peptide sequences having at least 60%, at least 70%, at least 75%, at least 80%, at least 90%, at least 92%, at least 95%, at least 96%, at least 97%, at least 99% or at least 99% sequence identity to SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or 190.
Nucleic acid molecules include DNA, cDNA and RNA sequences which encode a mutated FGF1 peptide. Silent mutations in the coding sequence result from the degeneracy (i.e., redundancy) of the genetic code, whereby more than one codon can encode the same amino acid residue. Thus, for example, leucine can be encoded by CTT, CTC, CTA, CTG, TTA, or TTG; serine can be encoded by TCT, TCC, TCA, TCG, AGT, or AGC; asparagine can be encoded by AAT or AAC; aspartic acid can be encoded by GAT or GAC; cysteine can be encoded by TGT or TGC; alanine can be encoded by GCT, GCC, GCA, or GCG; glutamine can be encoded by CAA or CAG; tyrosine can be encoded by TAT or TAC; and isoleucine can be encoded by ATT, ATC, or ATA. Tables showing the standard genetic code can be found in various sources (see, for example, Stryer, 1988, Biochemistry, 3rd Edition, W.H. 5 Freeman and Co., NY).
Codon preferences and codon usage tables for a particular species can be used to engineer isolated nucleic acid molecules encoding a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) that take advantage of the codon usage preferences of that particular species. For example, the FGFR1c-binding protein multimers and mutated FGF1 proteins disclosed herein can be designed to have codons that are preferentially used by a particular organism of interest.
A nucleic acid encoding a FGFR1c-binding protein multimer or a mutant FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be cloned or amplified by in vitro methods, such as the polymerase chain reaction (PCR), the ligase chain reaction (LCR), the transcription-based amplification system (TAS), the self-sustained sequence replication system (3SR) and the Qβ replicase amplification system (QB). A wide variety of cloning and in vitro amplification methodologies are well known to persons skilled in the art. In addition, nucleic acids encoding sequences encoding a FGFR1c-binding protein multimer or a mutant FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be prepared by cloning techniques. Examples of appropriate cloning and sequencing techniques, and instructions sufficient to direct persons of skill through cloning are found in Sambrook et al. (ed.), Molecular Cloning: A Laboratory Manual 2nd ed., vol. 1-3, Cold Spring Harbor Laboratory Press, Cold Spring, Harbor, N.Y., 1989, and Ausubel et al., (1987) in “Current Protocols in Molecular Biology,” John Wiley and Sons, New York, N.Y.
Nucleic acid sequences encoding a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be prepared by any suitable method including, for example, cloning of appropriate sequences or by direct chemical synthesis by methods such as the phosphotriester method of Narang et al., Meth. Enzymol. 68:90-99, 1979; the phosphodiester method of Brown et al., Meth. Enzymol. 68:109-151, 1979; the diethylphosphoramidite method of Beaucage et al., Tetra. Lett. 22:1859-1862, 1981; the solid phase phosphoramidite triester method described by Beaucage & Caruthers, Tetra. Letts. 22(20):1859-1862, 1981, for example, using an automated synthesizer as described in, for example, Needham-VanDevanter et al., Nucl. Acids Res. 12:6159-6168, 1984; and, the solid support method of U.S. Pat. No. 4,458,066. Chemical synthesis produces a single stranded oligonucleotide. This can be converted into double stranded DNA by hybridization with a complementary sequence, or by polymerization with a DNA polymerase using the single strand as a template. One of skill would recognize that while chemical synthesis of DNA is generally limited to sequences of about 100 bases, longer sequences may be obtained by the ligation of shorter sequences.
In one example, a mutant FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) is prepared by inserting the cDNA which encodes the mutant FGF1 protein into a vector. The insertion can be made so that the mutant FGF1 protein is read in frame so that the mutant FGF1 protein is produced. Similar methods can be used for a FGFR1c-binding protein multimer.
The mutated FGF1 protein nucleic acid coding sequence (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be inserted into an expression vector including, but not limited to a plasmid, virus or other vehicle that can be manipulated to allow insertion or incorporation of sequences and can be expressed in either prokaryotes or eukaryotes. Hosts can include microbial, yeast, insect, plant and mammalian organisms. Methods of expressing DNA sequences having eukaryotic or viral sequences in prokaryotes are well known in the art. Biologically functional viral and plasmid DNA vectors capable of expression and replication in a host are known in the art. The vector can encode a selectable marker, such as a thymidine kinase gene. Similar methods can be used for a FGFR1c-binding protein multimer.
Nucleic acid sequences encoding a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be operatively linked to expression control sequences. An expression control sequence operatively linked to a FGFR1c-binding protein multimer or mutated FGF1 protein coding sequence is ligated such that expression of the FGFR1c-binding protein multimer or mutant FGF1 protein coding sequence is achieved under conditions compatible with the expression control sequences. The expression control sequences include, but are not limited to appropriate promoters, enhancers, transcription terminators, a start codon (i.e., ATG) in front of a FGFR1c-binding protein multimer or mutated FGF1 protein-encoding gene, splicing signal for introns, maintenance of the correct reading frame of that gene to permit proper translation of mRNA, and stop codons.
In one embodiment, vectors are used for expression in yeast such as S. cerevisiae, P. pastoris, or Kluyveromyces lactis. Several promoters are known to be of use in yeast expression systems such as the constitutive promoters plasma membrane H+-ATPase (PMA1), glyceraldehyde-3-phosphate dehydrogenase (GPD), phosphoglycerate kinase-1 (PGK1), alcohol dehydrogenase-1 (ADH1), and pleiotropic drug-resistant pump (PDR5). In addition, many inducible promoters are of use, such as GAL1-10 (induced by galactose), PHO5 (induced by low extracellular inorganic phosphate), and tandem heat shock HSE elements (induced by temperature elevation to 37° C.). Promoters that direct variable expression in response to a titratable inducer include the methionine-responsive MET3 and MET25 promoters and copper-dependent CUP1 promoters. Any of these promoters may be cloned into multicopy (20 or single copy (CEN) plasmids to give an additional level of control in expression level. The plasmids can include nutritional markers (such as URA3, ADE3, HIS1, and others) for selection in yeast and antibiotic resistance (AMP) for propagation in bacteria. Plasmids for expression on K. lactis are known, such as pKLAC1. Thus, in one example, after amplification in bacteria, plasmids can be introduced into the corresponding yeast auxotrophs by methods similar to bacterial transformation. The nucleic acid molecules encoding a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can also be designed to express in insect cells.
A FGFR1c-binding protein multimer or mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be expressed in a variety of yeast strains. For example, seven pleiotropic drug-resistant transporters, YOR1, SNQ2, PDR5, YCF1, PDR10, PDR11, and PDR15, together with their activating transcription factors, PDR1 and PDR3, have been simultaneously deleted in yeast host cells, rendering the resultant strain sensitive to drugs. Yeast strains with altered lipid composition of the plasma membrane, such as the erg6 mutant defective in ergosterol biosynthesis, can also be utilized. Proteins that are highly sensitive to proteolysis can be expressed in a yeast cell lacking the master vacuolar endopeptidase Pep4, which controls the activation of other vacuolar hydrolases. Heterologous expression in strains carrying temperature-sensitive (ts) alleles of genes can be employed if the corresponding null mutant is inviable.
Viral vectors can also be prepared that encode a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238). Exemplary viral vectors include polyoma, SV40, adenovirus, vaccinia virus, adeno-associated virus, herpes viruses including HSV and EBV, Sindbis viruses, alphaviruses and retroviruses of avian, murine, and human origin. Baculovirus (Autographa californica multinuclear polyhedrosis virus; AcMNPV) vectors are also known in the art, and may be obtained from commercial sources. Other suitable vectors include retrovirus vectors, orthopox vectors, avipox vectors, fowlpox vectors, capripox vectors, suipox vectors, adenoviral vectors, herpes virus vectors, alpha virus vectors, baculovirus vectors, Sindbis virus vectors, vaccinia virus vectors and poliovirus vectors. Specific exemplary vectors are poxvirus vectors such as vaccinia virus, fowlpox virus and a highly attenuated vaccinia virus (MVA), adenovirus, baculovirus and the like. Pox viruses of use include orthopox, suipox, avipox, and capripox virus. Orthopox include vaccinia, ectromelia, and raccoon pox. One example of an orthopox of use is vaccinia. Avipox includes fowlpox, canary pox and pigeon pox. Capripox include goatpox and sheeppox. In one example, the suipox is swinepox. Other viral vectors that can be used include other DNA viruses such as herpes virus and adenoviruses, and RNA viruses such as retroviruses and polio.
Viral vectors that encode a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can include at least one expression control element operationally linked to the nucleic acid sequence encoding the FGFR1c-binding protein multimer or mutated FGF1 protein. The expression control elements are inserted in the vector to control and regulate the expression of the nucleic acid sequence. Examples of expression control elements of use in these vectors includes, but is not limited to, lac system, operator and promoter regions of phage lambda, yeast promoters and promoters derived from polyoma, adenovirus, retrovirus or SV40. Additional operational elements include, but are not limited to, leader sequence, termination codons, polyadenylation signals and any other sequences necessary for the appropriate transcription and subsequent translation of the nucleic acid sequence encoding the mutated FGF1 protein in the host system. The expression vector can contain additional elements necessary for the transfer and subsequent replication of the expression vector containing the nucleic acid sequence in the host system. Examples of such elements include, but are not limited to, origins of replication and selectable markers. It will further be understood by one skilled in the art that such vectors are easily constructed using conventional methods (Ausubel et al., (1987) in “Current Protocols in Molecular Biology,” John Wiley and Sons, New York, N.Y.) and are commercially available.
Basic techniques for preparing recombinant DNA viruses containing a heterologous DNA sequence encoding the FGFR1c-binding protein multimer or mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) are known. Such techniques involve, for example, homologous recombination between the viral DNA sequences flanking the DNA sequence in a donor plasmid and homologous sequences present in the parental virus. The vector can be constructed for example by steps known in the art, such as by using a unique restriction endonuclease site that is naturally present or artificially inserted in the parental viral vector to insert the heterologous DNA.
When the host is a eukaryote, such methods of transfection of DNA as calcium phosphate coprecipitates, conventional mechanical procedures such as microinjection, electroporation, insertion of a plasmid encased in liposomes, or virus vectors can be used. Eukaryotic cells can also be co-transformed with polynucleotide sequences encoding a FGFR1c-binding protein multimer or a mutated FGF1 protein (such as one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), and a second foreign DNA molecule encoding a selectable phenotype, such as the herpes simplex thymidine kinase gene. Another method is to use a eukaryotic viral vector, such as simian virus 40 (SV40) or bovine papilloma virus, to transiently infect or transform eukaryotic cells and express the protein (see for example, Eukaryotic Viral Vectors, Cold Spring Harbor Laboratory, Gluzman ed., 1982). One of skill in the art can readily use an expression systems such as plasmids and vectors of use in producing mutated FGF1 proteins in cells including higher eukaryotic cells such as the COS, CHO, HeLa and myeloma cell lines.
A nucleic acid molecule encoding a mutated FGF1 protein disclosed herein (or chimeric protein including a mutant FGF1), or an FGFR1c-binding protein multimer disclosed herein, can be used to transform cells and make transformed cells. Thus, cells expressing a FGFR1c-binding protein multimer (such as a FGFR1c-binding protein multimer made using peptides having at least 60%, at least 70%, at least 75%, at least 80%, at least 90%, at least 92%, at least 95%, at least 96%, at least 97%, at least 99%, at least 99%, or 100% sequence identity to SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or 190) or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), are disclosed. Cells expressing a mutated FGF1 protein disclosed herein, or expressing an FGFR1c-binding protein multimer, can be eukaryotic or prokaryotic. Examples of such cells include, but are not limited to bacteria, archea, plant, fungal, yeast, insect, and mammalian cells, such as Lactobacillus, Lactococcus, Bacillus (such as B. subtilis), Escherichia (such as E. coli), Clostridium, Saccharomyces or Pichia (such as S. cerevisiae or P. pastoris), Kluyveromyces lactis, Salmonella typhimurium, SF9 cells, C129 cells, 293 cells, Neurospora, and immortalized mammalian myeloid and lymphoid cell lines.
Cells expressing a mutated FGF1 protein or an FGFR1c-binding protein multimer are transformed or recombinant cells. Such cells can include at least one exogenous nucleic acid molecule that encodes a mutated FGF1 protein, for example one encoding a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238. Such cells can include at least one exogenous nucleic acid molecule that encodes an FGFR1c-binding protein multimer, such as one encoding a protein made using two or more peptides having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or 190. It is understood that all progeny may not be identical to the parental cell since there may be mutations that occur during replication. Methods of stable transfer, meaning that the foreign DNA is continuously maintained in the host cell, are known in the art.
Transformation of a host cell with recombinant DNA may be carried out by conventional techniques as are well known. Where the host is prokaryotic, such as E. coli, competent cells which are capable of DNA uptake can be prepared from cells harvested after exponential growth phase and subsequently treated by the CaCl2 method using procedures well known in the art. Alternatively, MgCl2 or RbCl can be used. Transformation can also be performed after forming a protoplast of the host cell if desired, or by electroporation. Techniques for the propagation of mammalian cells in culture are well-known (see, Jakoby and Pastan (eds), 1979, Cell Culture. Methods in Enzymology, volume 58, Academic Press, Inc., Harcourt Brace Jovanovich, N.Y.). Examples of commonly used mammalian host cell lines are VERO and HeLa cells, CHO cells, and WI38, BHK, and COS cell lines, although cell lines may be used, such as cells designed to provide higher expression desirable glycosylation patterns, or other features. Techniques for the transformation of yeast cells, such as polyethylene glycol transformation, protoplast transformation and gene guns are also known in the art.
Pharmaceutical compositions that include a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) or a nucleic acid encoding these proteins, can be formulated with an appropriate pharmaceutically acceptable carrier, depending upon the particular mode of administration chosen. Similarly, the disclosure provides pharmaceutical compositions that include one or more FGFR1c-binding protein multimers, such as multimers of SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, or 167, such as SEQ ID NO: 190 (or sequences having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or 190).
In some embodiments, the pharmaceutical composition consists essentially of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Table 1, the sequences in any of SEQ ID NOS: 21-84, or a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to any of SEQ ID NOS: 6-13, 21-84, 87-98, 101-112, 173-175, 177-179, 181-183, 185-189, and 191-238) (or a nucleic acid encoding such a protein) and a pharmaceutically acceptable carrier. In these embodiments, additional therapeutically effective agents are not included in the compositions.
In other embodiments, the pharmaceutical composition includes an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) (or a nucleic acid encoding such a protein) and a pharmaceutically acceptable carrier. Additional therapeutic agents, such as agents for the treatment of diabetes, can be included. Thus, the pharmaceutical compositions can include a therapeutically effective amount of another agent. Examples of such agents include, without limitation, anti-apoptotic substances such as the Nemo-Binding Domain and compounds that induce proliferation such as cyclin dependent kinase (CDK)-6, CDK-4 and cyclin D1. Other active agents can be utilized, such as antidiabetic agents for example, metformin, sulphonylureas (e.g., glibenclamide, tolbutamide, glimepiride), nateglinide, repaglinide, thiazolidinediones (e.g., rosiglitazone, pioglitazone), peroxisome proliferator-activated receptor (PPAR)-gamma-agonists (such as C1262570, aleglitazar, farglitazar, muraglitazar, tesaglitazar, and TZD) and PPAR-γ antagonists, PPAR-gamma/alpha modulators (such as KRP 297), alpha-glucosidase inhibitors (e.g., acarbose, voglibose), dipeptidyl peptidase (DPP)-IV inhibitors (such as LAF237, MK-431), alpha2-antagonists, agents for lowering blood sugar, cholesterol-absorption inhibitors, 3-hydroxy-3-methylglutaryl-coenzyme A (HMGCoA) reductase inhibitors (such as a statin), insulin and insulin analogues, GLP-1 and GLP-1 analogues (e.g. exendin-4) or amylin. Additional examples include immunomodulatory factors such as anti-CD3 mAb, growth factors such as HGF, VEGF, PDGF, lactogens, and PTHrP. In some examples, the pharmaceutical compositions containing a mutated FGF1 protein can further include a therapeutically effective amount of other FGFs, such as FGF21, FGF19, or both, heparin, or combinations thereof.
The pharmaceutically acceptable carriers and excipients useful in this disclosure are conventional. See, e.g., Remington: The Science and Practice of Pharmacy, The University of the Sciences in Philadelphia, Editor, Lippincott, Williams, & Wilkins, Philadelphia, Pa., 21st Edition (2005). For instance, parenteral formulations usually include injectable fluids that are pharmaceutically and physiologically acceptable fluid vehicles such as water, physiological saline, other balanced salt solutions, aqueous dextrose, glycerol or the like. For solid compositions (e.g., powder, pill, tablet, or capsule forms), conventional non-toxic solid carriers can include, for example, pharmaceutical grades of mannitol, lactose, starch, or magnesium stearate. In addition to biologically-neutral carriers, pharmaceutical compositions to be administered can contain minor amounts of non-toxic auxiliary substances, such as wetting or emulsifying agents, preservatives, pH buffering agents, or the like, for example sodium acetate or sorbitan monolaurate. Excipients that can be included are, for instance, other proteins, such as human serum albumin or plasma preparations.
In some embodiments, an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) is included in a controlled release formulation, for example, a microencapsulated formulation. Various types of biodegradable and biocompatible polymers, methods can be used, and methods of encapsulating a variety of synthetic compounds, proteins and nucleic acids, have been well described in the art (see, for example, U.S. Patent Publication Nos. 2007/0148074; 2007/0092575; and 2006/0246139; U.S. Pat. Nos. 4,522,811; 5,753,234; and 7,081,489; PCT Publication No. WO/2006/052285; Benita, Microencapsulation: Methods and Industrial Applications, 2nd ed., CRC Press, 2006).
In other embodiments, an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) is included in a nanodispersion system. Nanodispersion systems and methods for producing such nanodispersions are well known to one of skill in the art. See, e.g., U.S. Pat. No. 6,780,324; U.S. Pat. Publication No. 2009/0175953. For example, a nanodispersion system includes a biologically active agent and a dispersing agent (such as a polymer, copolymer, or low molecular weight surfactant). Exemplary polymers or copolymers include polyvinylpyrrolidone (PVP), poly(D,L-lactic acid) (PLA), poly(D,L-lactic-co-glycolic acid (PLGA), poly(ethylene glycol). Exemplary low molecular weight surfactants include sodium dodecyl sulfate, hexadecyl pyridinium chloride, polysorbates, sorbitans, poly(oxyethylene) alkyl ethers, poly(oxyethylene) alkyl esters, and combinations thereof. In one example, the nanodispersion system includes PVP and ODP or a variant thereof (such as 80/20 w/w). In some examples, the nanodispersion is prepared using the solvent evaporation method, see for example, Kanaze et al., Drug Dev. Indus. Pharm. 36:292-301, 2010; Kanaze et al., J. Appl. Polymer Sci. 102:460-471, 2006. With regard to the administration of nucleic acids, one approach to administration of nucleic acids is direct treatment with plasmid DNA, such as with a mammalian expression plasmid. As described above, the nucleotide sequence encoding an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be placed under the control of a promoter to increase expression of the protein.
Many types of release delivery systems are available and known. Examples include polymer based systems such as poly(lactide-glycolide), copolyoxalates, polycaprolactones, polyesteramides, polyorthoesters, polyhydroxybutyric acid, and polyanhydrides. Microcapsules of the foregoing polymers containing drugs are described in, for example, U.S. Pat. No. 5,075,109. Delivery systems also include non-polymer systems, such as lipids including sterols such as cholesterol, cholesterol esters and fatty acids or neutral fats such as mono- di- and tri-glycerides; hydrogel release systems; silastic systems; peptide based systems; wax coatings; compressed tablets using conventional binders and excipients; partially fused implants; and the like. Specific examples include, but are not limited to: (a) erosional systems in which an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or polynucleotide encoding this protein, is contained in a form within a matrix such as those described in U.S. Pat. Nos. 4,452,775; 4,667,014; 4,748,034; 5,239,660; and 6,218,371 and (b) diffusional systems in which an active component permeates at a controlled rate from a polymer such as described in U.S. Pat. Nos. 3,832,253 and 3,854,480. In addition, pump-based hardware delivery systems can be used, some of which are adapted for implantation.
Use of a long-term sustained release implant may be particularly suitable for treatment of chronic conditions, such as diabetes. Long-term release, as used herein, means that the implant is constructed and arranged to deliver therapeutic levels of the active ingredient for at least 30 days, and preferably 60 days. Long-term sustained release implants are well known to those of ordinary skill in the art and include some of the release systems described above. These systems have been described for use with nucleic acids (see U.S. Pat. No. 6,218,371). For use in vivo, nucleic acids and peptides are preferably relatively resistant to degradation (such as via endo- and exo-nucleases). Thus, modifications of the disclosed mutated FGF1 proteins, such as the inclusion of a C-terminal amide, can be used.
The dosage form of the pharmaceutical composition can be determined by the mode of administration chosen. For instance, in addition to injectable fluids, topical, inhalation, oral and suppository formulations can be employed. Topical preparations can include eye drops, ointments, sprays, patches and the like. Inhalation preparations can be liquid (e.g., solutions or suspensions) and include mists, sprays and the like. Oral formulations can be liquid (e.g., syrups, solutions or suspensions), or solid (e.g., powders, pills, tablets, or capsules). Suppository preparations can also be solid, gel, or in a suspension form. For solid compositions, conventional non-toxic solid carriers can include pharmaceutical grades of mannitol, lactose, cellulose, starch, or magnesium stearate. Actual methods of preparing such dosage forms are known, or will be apparent, to those skilled in the art.
The pharmaceutical compositions that include an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be formulated in unit dosage form, suitable for individual administration of precise dosages. In one non-limiting example, a unit dosage contains from about 1 mg to about 1 g of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), such as about 10 mg to about 100 mg, about 50 mg to about 500 mg, about 100 mg to about 900 mg, about 250 mg to about 750 mg, or about 400 mg to about 600 mg. In other examples, a therapeutically effective amount of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) is about 0.01 mg/kg to about 50 mg/kg, for example, about 0.5 mg/kg to about 25 mg/kg or about 1 mg/kg to about 10 mg/kg. In other examples, a therapeutically effective amount of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) is about 1 mg/kg to about 5 mg/kg, for example about 2 mg/kg. In a particular example, a therapeutically effective amount of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) includes about 1 mg/kg to about 10 mg/kg, such as about 2 mg/kg.
The disclosed FGFR1c-binding protein multimers (such as a protein made using two or more peptides having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, or 190) and mutated FGF1 proteins and chimeras (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or nucleic acids encoding such proteins, can be administered to a subject, for example to treat a metabolic disease, for example by reducing fed and fasting blood glucose, improving insulin sensitivity and glucose tolerance, reducing systemic chronic inflammation, ameliorating hepatic steatosis in a mammal, reducing food intake, or combinations thereof.
The compositions of this disclosure that include an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) (or nucleic acids encoding these molecules) can be administered to humans or other animals by any means, including orally, intravenously, intramuscularly, intraperitoneally, intranasally, intradermally, intrathecally, subcutaneously, via inhalation or via suppository. In one non-limiting example, the composition is administered via injection. In some examples, site-specific administration of the composition can be used, for example by administering an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) (or a nucleic acid encoding these molecules) to pancreas tissue (for example by using a pump, or by implantation of a slow release form at the site of the pancreas). The particular mode of administration and the dosage regimen will be selected by the attending clinician, taking into account the particulars of the case (e.g. the subject, the disease, the disease state involved, the particular treatment, and whether the treatment is prophylactic). Treatment can involve daily or multi-daily or less than daily (such as weekly or monthly etc.) doses over a period of a few days to months, or even years. For example, a therapeutically effective amount of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be administered in a single dose, twice daily, weekly, or in several doses, for example daily, or during a course of treatment. In a particular non-limiting example, treatment involves once daily dose or twice daily dose.
The amount of an FGFR1c-binding protein multimer or mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) administered can be dependent on the subject being treated, the severity of the affliction, and the manner of administration, and is best left to the judgment of the prescribing clinician. Within these bounds, the formulation to be administered will contain a quantity of the FGFR1c-binding protein multimer or mutated FGF1 protein in amounts effective to achieve the desired effect in the subject being treated. A therapeutically effective amount of an FGFR1c-binding protein multimer or mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be the amount of the mutant FGF1protein or FGFR1c-binding protein multimer, or a nucleic acid encoding these molecules that is necessary to treat diabetes or reduce blood glucose levels (for example a reduction of at least 5%, at least 10% or at least 20%, for example relative to no administration of the mutant FGF1 or FGFR1c-binding protein multimer).
When a viral vector is utilized for administration of an nucleic acid encoding an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), the recipient can receive a dosage of each recombinant virus in the composition in the range of from about 105 to about 1010 plaque forming units/mg mammal, although a lower or higher dose can be administered. Examples of methods for administering the composition into mammals include, but are not limited to, exposure of cells to the recombinant virus ex vivo, or injection of the composition into the affected tissue or intravenous, subcutaneous, intradermal or intramuscular administration of the virus. Alternatively the recombinant viral vector or combination of recombinant viral vectors may be administered locally by direct injection into the pancreases in a pharmaceutically acceptable carrier.
Generally, the quantity of recombinant viral vector, carrying the nucleic acid sequence of an FGFR1c-binding protein multimer or the mutated FGF1 protein to be administered (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) is based on the titer of virus particles. An exemplary range to be administered is 105 to 1010 virus particles per mammal, such as a human.
In some examples, an FGFR1c-binding protein multimer or mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or a nucleic acid encoding the FGFR1c-binding protein multimer or the mutated FGF1 protein, is administered in combination (such as sequentially or simultaneously or contemporaneously) with one or more other agents, such as those useful in the treatment of diabetes or insulin resistance.
Anti-diabetic agents are generally categorized into six classes: biguanides (e.g., metformin); thiazolidinediones (including rosiglitazone (Avandia®), pioglitazone (Actos®), rivoglitazone, and troglitazone); sulfonylureas; inhibitors of carbohydrate absorption; fatty acid oxidase inhibitors and anti-lipolytic drugs; and weight-loss agents. Any of these agents can also be used in the methods disclosed herein. The anti-diabetic agents include those agents disclosed in Diabetes Care, 22(4):623-634. One class of anti-diabetic agents of use is the sulfonylureas, which are believed to increase secretion of insulin, decrease hepatic glucogenesis, and increase insulin receptor sensitivity. Another class of anti-diabetic agents use the biguanide antihyperglycemics, which decrease hepatic glucose production and intestinal absorption, and increase peripheral glucose uptake and utilization, without inducing hyperinsulinemia.
In some examples, an FGFR1c-binding protein multimer or mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) can be administered in combination with effective doses of anti-diabetic agents (such as biguanides, thiazolidinediones, or incretins) and/or lipid lowering compounds (such as statins or fibrates). The term “administration in combination” or “co-administration” refers to both concurrent and sequential administration of the active agents. Administration of an FGFR1c-binding protein multimer or mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 2388) or a nucleic acid encoding such an FGFR1c-binding protein multimer or a mutant FGF1 protein, may also be in combination with lifestyle modifications, such as increased physical activity, low fat diet, low sugar diet, and smoking cessation.
Additional agents that can be used in combination with the disclosed FGFR1c-binding protein multimers and mutated FGF1 proteins include, without limitation, anti-apoptotic substances such as the Nemo-Binding Domain and compounds that induce proliferation such as cyclin dependent kinase (CDK)-6, CDK-4 and Cyclin D1. Other active agents can be utilized, such as antidiabetic agents for example, metformin, sulphonylureas (e.g., glibenclamide, tolbutamide, glimepiride), nateglinide, repaglinide, thiazolidinediones (e.g., rosiglitazone, pioglitazone), peroxisome proliferator-activated receptor (PPAR)-gamma-agonists (such as C1262570) and antagonists, PPAR-gamma/alpha modulators (such as KRP 297), alpha-glucosidase inhibitors (e.g., acarbose, voglibose), Dipeptidyl peptidase (DPP)-IV inhibitors (such as LAF237, MK-431), alpha2-antagonists, agents for lowering blood sugar, cholesterol-absorption inhibitors, 3-hydroxy-3-methylglutaryl-coenzyme A (HMGCoA) reductase inhibitors (such as a statin), insulin and insulin analogues, GLP-1 and GLP-1 analogues (e.g., exendin-4) or amylin. In some embodiments the agent is an immunomodulatory factor such as anti-CD3 mAb, growth factors such as HGF, vascular endothelial growth factor (VEGF), platelet derived growth factor (PDGF), lactogens, or parathyroid hormone related protein (PTHrP). In one example, the mutated FGF1 protein is administered in combination with a therapeutically effective amount of another FGF, such as FGF21, FGF19, or both, heparin, or combinations thereof.
In some embodiments, methods are provided for treating diabetes or pre-diabetes in a subject by administering a therapeutically effective amount of a composition including an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or a nucleic acid encoding the FGFR1c-binding protein multimer or the mutated FGF1 protein, to the subject. The subject can have diabetes type I or diabetes type II. The subject can be any mammalian subject, including human subjects and veterinary subjects such as cats and dogs. The subject can be a child or an adult. The subject can also be administered insulin. The method can include measuring blood glucose levels.
In some examples, the method includes selecting a subject with diabetes, such as type I or type II diabetes, or a subject at risk for diabetes, such as a subject with pre-diabetes. These subjects can be selected for treatment with the disclosed FGFR1c-binding protein multimer or mutated FGF1 proteins (such as a protein g generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238) or nucleic acid molecules encoding such.
In some examples, a subject with diabetes may be clinically diagnosed by a fasting plasma glucose (FPG) concentration of greater than or equal to 7.0 millimole per liter (mmol/L) (126 milligram per deciliter (mg/dL)), or a plasma glucose concentration of greater than or equal to 11.1 mmol/L (200 mg/dL) at about two hours after an oral glucose tolerance test (OGTT) with a 75 gram (g) load, or in a patient with classic symptoms of hyperglycemia or hyperglycemic crisis, a random plasma glucose concentration of greater than or equal to 11.1 mmol/L (200 mg/dL), or HbA1c levels of greater than or equal to 6.5%. In other examples, a subject with pre-diabetes may be diagnosed by impaired glucose tolerance (IGT). An OGTT two-hour plasma glucose of greater than or equal to 140 mg/dL and less than 200 mg/dL (7.8-11.0 mM), or a fasting plasma glucose (FPG) concentration of greater than or equal to 100 mg/dL and less than 125 mg/dL (5.6-6.9 mmol/L), or HbA1c levels of greater than or equal to 5.7% and less than 6.4% (5.7-6.4%) is considered to be IGT, and indicates that a subject has pre-diabetes. Additional information can be found in Standards of Medical Care in Diabetes—2010 (American Diabetes Association, Diabetes Care 33:S11-61, 2010).
In some examples, the subject treated with the disclosed compositions and methods has HbA1C of greater than 6.5% or greater than 7%.
In some examples, treating diabetes includes one or more of increasing glucose tolerance (such as an increase of at least 5%, at least 10%, at least 20%, or at least 50%, for example relative to no administration of the FGFR1c-binding protein multimer or mutant FGF1), decreasing insulin resistance (for example, decreasing plasma glucose levels, decreasing plasma insulin levels, or a combination thereof, such as decreases of at least 5%, at least 10%, at least 20%, or at least 50%, for example relative to no administration of the FGFR1c-binding protein multimer or mutant FGF1), decreasing serum triglycerides (such as a decrease of at least 10%, at least 20%, or at least 50%, for example relative to no administration of the FGFR1c-binding protein multimer or mutant FGF1), decreasing free fatty acid levels (such as a decrease of at least 5%, at least 10%, at least 20%, or at least 50%, for example relative to no administration of the FGFR1c-binding protein multimer or mutant FGF1), and decreasing HbA1c levels in the subject (such as a decrease of at least 0.5%, at least 1%, at least 1.5%, at least 2%, or at least 5% for example relative to no administration of the FGFR1c-binding protein multimer or mutant FGF1). In some embodiments, the disclosed methods include measuring glucose tolerance, insulin resistance, plasma glucose levels, plasma insulin levels, serum triglycerides, free fatty acids, and/or HbA1c levels in a subject.
In some examples, administration of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or nucleic acid molecule encoding such, treats a metabolic disease, such as diabetes (such as type II diabetes) or pre-diabetes, by decreasing of HbA1C, such as a reduction of at least 0.5%, at least 1%, or at least 1.5%, such as a decrease of 0.5% to 0.8%, 0.5% to 1%, 1 to 1.5% or 0.5% to 2%. In some examples the target for HbA1C is less than about 6.5%, such as about 4-6%, 4-6.4%, or 4-6.2%. In some examples, such target levels are achieved within about 26 weeks, within about 40 weeks, or within about 52 weeks. Methods of measuring HbA1C are routine, and the disclosure is not limited to particular methods. Exemplary methods include HPLC, immunoassays, and boronate affinity chromatography.
In some examples, administration of an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or nucleic acid molecule encoding such, treats diabetes or pre-diabetes by increasing glucose tolerance, for example, by decreasing blood glucose levels (such as two-hour plasma glucose in an OGTT or FPG) in a subject. In some examples, the method includes decreasing blood glucose by at least 5% (such as at least 10%, at least 15%, at least 20%, at least 25%, at least 30%, at least 35%, or more) as compared with a control (such as no administration of any of insulin, an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or a nucleic acid molecule encoding such). In particular examples, a decrease in blood glucose level is determined relative to the starting blood glucose level of the subject (for example, prior to treatment with an FGFR1c-binding protein multimer or a mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or nucleic acid molecule encoding such). In other examples, decreasing blood glucose levels of a subject includes reduction of blood glucose from a starting point (for example greater than about 126 mg/dL FPG or greater than about 200 mg/dL OGTT two-hour plasma glucose) to a target level (for example, FPG of less than 126 mg/dL or OGTT two-hour plasma glucose of less than 200 mg/dL). In some examples, a target FPG may be less than 100 mg/dL. In other examples, a target OGTT two-hour plasma glucose may be less than 140 mg/dL. Methods to measure blood glucose levels in a subject (for example, in a blood sample from a subject) are routine.
In other embodiments, the disclosed methods include comparing one or more indicator of diabetes (such as glucose tolerance, triglyceride levels, free fatty acid levels, or HbA1c levels) to a control (such as no administration of any of insulin, any FGFR1c-binding protein multimer or any mutated FGF1 protein (such as a protein generated using the sequences shown in Tables 1 and 2, the sequences in any of SEQ ID NOS: 21-84, 113-120 and 191-238 or those encoding a protein having at least 90%, at least 95%, at least 95%, at least 96%, at least 97%, at least 98%, at least 99% or 100% sequence identity to SEQ ID NO: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 or 238), or a nucleic acid molecule encoding such), wherein an increase or decrease in the particular indicator relative to the control (as discussed above) indicates effective treatment of diabetes. The control can be any suitable control against which to compare the indicator of diabetes in a subject. In some embodiments, the control is a sample obtained from a healthy subject (such as a subject without diabetes). In some embodiments, the control is a historical control or standard reference value or range of values (such as a previously tested control sample, such as a group of subjects with diabetes, or group of samples from subjects that do not have diabetes). In further examples, the control is a reference value, such as a standard value obtained from a population of normal individuals that is used by those of skill in the art. Similar to a control population, the value of the sample from the subject can be compared to the mean reference value or to a range of reference values (such as the high and low values in the reference group or the 95% confidence interval). In other examples, the control is the subject (or group of subjects) treated with placebo compared to the same subject (or group of subjects) treated with the therapeutic compound in a cross-over study. In further examples, the control is the subject (or group of subjects) prior to treatment.
The disclosure is illustrated by the following non-limiting Examples.
Mutated FGF1 proteins can be made using known methods (e.g., see Xia et al., PLoS One. 7(11):e48210, 2012). An example is provided below.
Briefly, a nucleic acid sequence encoding an FGF1 mutant protein (e.g., any of SEQ ID NOs: 6, 7, 8, 9, 10, 11, 12, 13, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 173, 174, 175, 177, 178, 179, 181, 182, 183, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 202, 203, 204, 205, 206, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 217, 218, 219, 220, 221, 222, 223, 224, 225, 226, 227, 228, 229, 230, 231, 232, 233, 234, 235, 236, 237 and 238) can be fused downstream of an enterokinase (EK) recognition sequence (Asp4Lys) preceded by a flexible 20 amino acid linker (derived from the S-tag sequence of pBAC-3) and an N-terminal (His)6 tag. The resulting expressed fusion protein utilizes the (His)6 tag for efficient purification and can be subsequently processed by EK digestion to yield the mutant FGF1 protein.
The mutant FGF1 protein can be expressed from an E. coli host after induction with isopropyl-β-D-thio-galactoside. The expressed protein can be purified utilizing sequential column chromatography on Ni-nitrilotriacetic acid (NTA) affinity resin followed by ToyoPearl HW-40S size exclusion chromatography. The purified protein can be digested with EK to remove the N-terminal (His)6 tag, 20 amino acid linker, and (Asp4Lys) EK recognition sequence. A subsequent second Ni-NTA chromatographic step can be utilized to remove the released N-terminal mutant FGF1 protein (along with any uncleaved fusion protein). Final purification can be performed using HiLoad Superdex 75 size exclusion chromatography equilibrated to 50 mM Na2PO4, 100 mM NaCl, 10 mM (NH4)2SO4, 0.1 mM ethylenediaminetetraacetic acid (EDTA), 5 mM L-Methionine, pH at 6.5 (“PBX” buffer); L-Methionine can be included in PBX buffer to limit oxidization of reactive thiols and other potential oxidative degradation.
In some examples, the enterokinase is not used, and instead, an FGF1 mutant protein (such as one that includes an N-terminal methionine) can be made and purified using heparin affinity chromatography.
For storage and use, the purified mutant FGF1 protein can be sterile filtered through a 0.22 micron filter, purged with N2, snap frozen in dry ice and stored at −80° C. prior to use. The purity of the mutant FGF 1protein can be assessed by both Coomassie Brilliant Blue and Silver Stain Plus (BIO-RAD Laboratories, Inc., Hercules Calif.) stained sodium dodecylsulfate polyacrylamide gel electrophoresis (SDS PAGE). Mutant FGF1 proteins can be prepared in the absence of heparin. Prior to IV bolus, heparin, or PBS, can be added to the protein.
We have shown that administration of mature rFGF1 to ob/ob mice can lower blood glucose and have reduced adverse effects as compared to those observed with thiazolidinediones (TZDs).
To dissociate the mitogenic effects of rFGF1 from its glucose lowering activities, an FGF1 ligand was generated that lacks the first 24 residues from the N-terminus, rFGF1ΔNT (SEQ ID NO: 7). Based on the crystal structures of FGF1-FGFR complexes, the truncation was predicted to reduce the binding affinity of FGF1 for selected FGFRs including FGFR4, and hence the ligand's mitogenicity.
Mice were housed in a temperature-controlled environment with a 12-hour light/12-hour dark cycle and handled according to institutional guidelines complying with U.S. legislation. Male ob/ob mice (B6.V-Lepob/J, Jackson laboratories) and male C57BL/6J mice received a standard or high fat diet (MI laboratory rodent diet 5001, Harlan Teklad; high fat (60%) diet F3282, Bio-Serv) and acidified water ad libitum. STZ-induced diabetic mice on the C57BL/6J background were purchased from Jackson laboratories. 0.1 mg/ml solutions in PBS of mouse FGF1 (Prospec, Ness Ziona, Israel), human FGF1 (Prospec, Ness Ziona, Israel), mouse FGF2 (Prospec, Ness Ziona, Israel), mouse FGF9 (Prospec, Ness Ziona, Israel), and mouse FGF10 (R&D systems) were injected as described.
Blood was collected by tail bleeding either in the ad libitum fed state or following overnight fasting. Free fatty acids (Wako), triglycerides (Thermo) and cholesterol (Thermo) were measured using enzymatic colorimetric methods following the manufacturer's instructions. Serum insulin levels were measured using an Ultra Sensitive Insulin ELISA kit (Crystal Chem). Plasma adipokine and cytokine levels were measured using Milliplex™ MAP and Bio-Plex Pro™ kits (Millipore and Bio-Rad).
Glucose tolerance tests (GTT) were conducted after o/n fasting. Mice were injected i.p. with 1 g of glucose per/kg bodyweight and blood glucose was monitored at 0, 15, 30, 60, and 120 min using a OneTouch Ultra glucometer (Lifescan Inc). Insulin tolerance tests (ITT) were conducted after 3 h fasting. Mice were injected i.p. with 2 U of insulin/kg bodyweight (Humulin R; Eli Lilly) and blood glucose was monitored at 0, 15, 30, 60, and 90 min using a OneTouch Ultra glucometer (Lifescan Inc). Real-time metabolic analyses were conducted in a Comprehensive Lab Animal Monitoring System (Columbus Instruments). CO2 production, O2 consumption, RQ (relative rates of carbohydrate versus fat oxidation), and ambulatory counts were determined for six consecutive days and nights, with at least 24 h for adaptation before data recording. Total body composition analysis was performed using an EchoMRI-100™ (Echo Medical Systems, LLC)
Human FGF1 (M1 to D155; SEQ ID NO: 2) and N-terminally truncated human FGF1 (FGF1ΔNT; K25 to D155; SEQ ID NO: 7) were expressed in Escherichia coli cells and purified from the soluble bacterial cell lysate fraction by heparin affinity, ion exchange, and size exclusion chromatographies. The minimal ligand-binding domain of human FGFR1c (D142 to R365), FGFR2b (A140 to E369), FGFR2c (N149 to E368), FGFR3c (D147 to E365), and FGFR4 (Q144 to D355) was refolded in vitro from bacterial inclusion bodies and purified by published protocols.
Mice received a standard diet (ob/ob and db/db mice) or high fat diet (C57/BL6 mice, 60% fat, F3282, Bio-Serv) and acidified water ad libitum. Blood glucose levels were monitored either in the ad libitum fed state or following overnight fasting after injection of recombinant FGF1 or rFGF1ΔNT (in PBS, Prospec, Israel) using the specified delivery route and dosage. Glucose tolerance tests (GTT) and Insulin tolerance tests (ITT) were conducted after overnight and 5 hour fasting, respectively. Glucose (1 g/kg i.p.) or insulin (0.5 U insulin/kg i.p.) was injected and blood glucose monitored. Serum analyses were performed on blood collected by tail bleeding either in the ad libitum fed state or following overnight fasting.
Remarkably, parenteral delivery of rFGF1ΔNT lowered blood glucose levels to the same extent as rFGF1 in both genetic- and diet-induced mouse models of diabetes (
FGF1 mutants shown in Table 3 were tested as described in Example 2.
As shown in Table 3, up to 12 N-terminal amino acids can be deleted from FGF1 without significantly affecting activity, while an FGF1 mutant lacking 14 N-terminal amino acids failed to lower glucose in diabetic mice. Mutations that increase the thermal stability of FGF1 were generally well tolerated, however glucose lowering activity was lost in a mutant with high thermal stability. Furthermore, mutations to the putative heparan sulfate binding site had minimal effect to the glucose lowering actions of FGF1. Notably, the effects of N-terminal deletions and selected stabilizing mutations appeared additive.
Peptides M1, M2, M3, M4, and M5 (see SEQ ID NO: 22, 28, 40, 54 and 212, respectively); KN (SEQ ID NO: 10), KLE (SEQ ID NO: 11), and FGF1 (SEQ ID NO: 5) were generated as described in Example 1. The NT truncations, peptides NT1 (SEQ ID NO: 7), NT2 (SEQ ID NO: 8), and NT3 (SEQ ID NO: 9), were prepared without the His tag and enterokinase cleavage, and purified with heparin affinity and ion exchange chromatography. Peptides (10 ng/ml) were incubated with serum-starved HEK293 cells for 15 minutes. Total cell lysates were subject to Western blotting with antibodies specific for pAkt, Akt, pERK and ERK.
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Peptides M1, M2, M3 (see SEQ ID NOS: 22, 28, and 40, respectively), FGF1 (SEQ ID NO: 5), NT1 (SEQ ID NO: 7) and NT2 (SEQ ID NO: 8) were generated as described in Example 4. Peptides (0.5 mg/kg) or PBS (control) were injected SQ into 5 mo old C57BL/6J ob/ob mice fed normal chow. Blood glucose levels were subsequently determined.
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Peptides FGF1 (SEQ ID NO: 5), FGF1ΔNT (SEQ ID NO: 7) and NT2 (SEQ ID NO: 8) were generated as described in Example 4. Peptides (10 ng/ml) were incubated with serum-starved HEK293 cells for 15 minutes. Total cell lysates were subject to Western blotting with antibodies specific for pAkt, Akt, pERK and ERK.
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Peptides FGF1-KLE (SEQ ID NO: 11) or FGF1-KN (SEQ ID NO: 10) were generated as described in Example 1. Peptides (0.5 mg/kg) were injected SQ into 5 mo old C57BL/6J ob/ob mice fed normal chow. Blood glucose levels were subsequently determined 0 to 120 hours later.
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Peptides rFGF1ΔNT (SEQ ID NO: 7) and rFGF1 (SEQ ID NO: 5) were generated as described in Example 4 (generated with an N-terminal methionine and purified with heparin affinity and ion exchange chromatography). Peptides (0.016 to 10 ng/ml) or PBS were incubated with serum-starved HEK293 cells for 15 minutes. Total cell lysates were subject to Western blotting with antibodies specific for pFRS2α, pAkt, Akt, pERK and ERK. Peptides (0.5 mg/kg) were injected SQ into high fat diet (HFD) fed diet-induced obesity (DIO) mice or into 12 week old C57BL/6J ob/ob mice (0 to 0.5 mg/kg) fed normal chow. Blood glucose levels were subsequently determined.
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Peptides NT1 (SEQ ID NO: 7), NT2 (SEQ ID NO: 8), and NT3 (SEQ ID NO: 9) were generated as described in Example 4. Peptides (0.5 mg/kg) were injected SQ into 5 mo old C57BL/6J ob/ob mice fed normal chow, or peptides (0 to 0.5 mg/kg) were injected SQ into 12 week old ob/ob mice fed normal chow. Blood glucose levels were subsequently determined (0 hr, 16 hrs, or 24 hrs).
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In another experiment, NT1 (SEQ ID NO: 7) (0.5 mg/kg) was injected SQ into 8 month old HFD-fed wildtype (FGFR1 f/f, open bars) or adipose-specific FGFR1 knockout (R1 KO, aP2-Cre; FGFR1 f/f, filled bars) mice Blood glucose levels were subsequently determined (0 hr, 12 hrs, or 24 hrs).
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Peptides K118E (SEQ ID NO: 13), K118N (SEQ ID NO: 12), FGF1 (SEQ ID NO: 5), and KKK (SEQ ID NO: 114) were generated as described in Example 1, while FGF1ΔNT (NT1) (SEQ ID NO: 7) was expressed with an N-terminal methionine and purified using heparin affinity and ion exchange chromatography. Peptides (0.5 mg/kg) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 120 hours). These mice are diet-induced obese (DIO) mice.
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Peptides KN (SEQ ID NO: 10), KKK (Salk_010, SEQ ID NO: 226), FGF1 (SEQ ID NO: 5), and KLE (Salk_011, SEQ ID NO: 11) were generated as described in Example 1, while FGF1ΔNT (NT1) (SEQ ID NO: 7) and FGF1ΔNTKN (Salk_009, SEQ ID NO: 225) were expressed with an N-terminal methionine and purified using heparin affinity and ion exchange chromatographies. Peptides (0.5 mg/kg) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 120 hours).
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Peptides FGF1 (SEQ ID NO: 5), and Salk_013 (SEQ ID NO: 31) were generated as described in Example 1, while Salk_012 (SEQ ID NO: 79) was expressed with an N-terminal methionine and purified using heparin affinity and ion exchange chromatographies. Peptides (0.5 mg/kg) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 96 hours).
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Peptides Salk_014 (SEQ ID NO: 230), Salk_024 (SEQ ID NO: 84), Salk_025 (SEQ ID NO: 208), and Salk_026 (SEQ ID NO: 209), were generated as described in Example 1, while Salk_023 (SEQ ID NO: 38) was expressed with an N-terminal methionine and purified using heparin affinity and ion exchange chromatographies. Peptides (0.5 mg/kg) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 72 hours).
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Peptides Salk_014 (SEQ ID NO: 230), Salk_022 (SEQ ID NO: 119), and Salk_027 (SEQ ID NO: 207) were generated as described in Example 1. Peptides (0.5 mg/kg) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 24 hours).
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Peptides Salk_014 (SEQ ID NO: 230), was generated as described in Example 1, while Salk_032 (SEQ ID NO: 215) was expressed with an N-terminal methionine and purified using heparin affinity and ion exchange chromatographies. Peptides (0.5 mg/kg) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 24 hours).
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Peptides Salk_014 (SEQ ID NO: 230), and Salk_019 (SEQ ID NO: 224) were generated as described in Example 1. Peptides (Salk_014; 0.5 mg/kg, Salk_019; indicated doses) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 24 hours).
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Peptides FGF1 (SEQ ID NO: 5), FGF1ΔNT (SEQ ID NO: 7), FGF21 (SEQ ID 20) and FGF1-FGF21 chimera (wherein the FGF1 portion includes K112D, K113Q, and K118V mutations, thus the chimera is SEQ ID NO: 114+SEQ ID NO: 86) were generated as described in Example 1. Peptides (0.5 mg/kg,) or PBS were injected SQ into 7 months HFD-fed C57BL/6J mice. Blood glucose levels were subsequently determined (0 to 48 hours).
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In view of the many possible embodiments to which the principles of the disclosure may be applied, it should be recognized that the illustrated embodiments are only examples of the disclosure and should not be taken as limiting the scope of the invention. Rather, the scope of the disclosure is defined by the following claims. We therefore claim as our invention all that comes within the scope and spirit of these claims.
This application is a continuation of U.S. application Ser. No. 14/520,178 filed Oct. 21, 2014, which claims priority to U.S. Provisional Application No. 61/893,766 filed Oct. 21, 2013, U.S. Provisional Application No. 61/949,945 filed Mar. 7, 2014, U.S. Provisional Application No. 61/975,530 filed Apr. 4, 2014, U.S. Provisional Application No. 62/019,185 filed Jun. 30, 2014, and U.S. Provisional Application No. 62/046,038 filed Sep. 4, 2014, all herein incorporated by reference in their entireties.
This invention was made with government support under Grant Nos. DK057978, DK090962, HL088093, HL105278 and ES010337 awarded by The National Institutes of Health, National Human Genome Research Institute. The government has certain rights in the invention.
| Number | Date | Country | |
|---|---|---|---|
| 61893766 | Oct 2013 | US | |
| 61949945 | Mar 2014 | US | |
| 61975530 | Apr 2014 | US | |
| 62019185 | Jun 2014 | US | |
| 62046038 | Sep 2014 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 14520178 | Oct 2014 | US |
| Child | 15910332 | US |
