1. Field of the Invention
The present invention relates to a mutated xylanase gene with high reaction activity and a site-specific mutagenesis method thereof More particularly, the present invention relates to the site-specific mutagenesis method utilized to mutate a fifty-eighth amino acid or a thirty-eighth amino acid of a xylanase gene from asparagine to aspartic acid so as to form the xylanase gene with the high reaction activity.
2. Description of the Related Art
Generally, most of xylans widely exist in structural polysaccharides of plants. The xylan can naturally function as a protective material for celluloses of plans such that the protective material can be a limitation in processing the natural material of plants. For example, in manufacturing pulps of paper materials, there is a need of using a chloride material as a bleaching agent to bleach the pulp due to the fact that the xylan and lignin adhere to surfaces of the celluloses of the plants. After processing the bleaching procedure, the reacted chloride may produce residual products of chemicals which are toxic and carcinogenic substances. The toxic and carcinogenic substances are persistent and bioaccumulating in the natural environment. This seriously destroys the natural environment and the ecological system.
In the livestock industry animal feed is widely fed and delivered to animal digestive system. The animal feed naturally contains celluloses and hemicelluloses of plants with which to cover its valuable nutrients. The celluloses and hemicelluloses of plants separate the valuable nutrients from enzyme existing in the animal digestive system. In this manner, the valuable nutrients of the animal feed cannot be reacted with the enzyme, or cannot be absorbed by animal intestines of the digestive system. Accordingly, this affects the growth of animals. If the undigested nutrients are excreted from the animal digestive system, there are pollution sources of the undigested nutrients which cause environmental pollution. Hence, there is a need for removal of the xylan from the celluloses and hemicelluloses of plants.
Generally, there is a conventional xylanase which is separated from a rumen microorganism and can be widely used to eliminate the above problem due to the fact that the xylanase can decompose the xylan. In the papermaking industry, the xylanases can decompose the hemicelluloses existing in the paper pulp such that links between the lignin and the celluloses, and between the lignin and the hemicelluloses. Accordingly, the lignin can be released from the paper pulp in the bleaching process. In the food-processing industry, an oligosaccharide is used not only to discompose the hemicelluloses in fruit juices, but also to be as raw materials of foods. In the livestock industry, the oligosaccharide is added to the animal feed. In this manner, the xylanases of the oligosaccharide can be utilized to decompose the xylan in attempting to aid the valuable nutrients to be absorbed by animal intestines of the digestive system. Accordingly, this results in an increase of the absorbed mount of the valuable nutrients.
The primary problem occurring during use of the conventional xylanases is due to the fact that the xylanases possess a lower degree of reaction activity. Hence, there is a need of a greater amount of use for higher reaction activity such that this results in an increase of material cost. In addition to this, the conventional site-specific mutagenesis method cannot enhance the reaction activity of the xylanase.
It is a common practice that a mutation method is utilized to improve a characteristic of enzyme in the art A conventional mutation method is disclosed in the book by Joshi et al. entitled “Hydrogen Bonding and Catalysis”: “a novel explanation for how a single amino acid substitution can change the pH optimum of a glycosidase,” J. Mol. Biol. (2000) 299, 255-279. A thirty-fifth amino acid of a xylanase gene of bacillus circulans is mutated from asparagine to aspartic acid for reducing a pKa value of the bacillus circulans so as to enhance its acid-resistibility. However, this conventional mutation method cannot effectively enhance the reaction activity of the xylanase gene.
As is described in greater detail below, the present invention intends to provide a mutated xylanase gene with high reaction activity and a site-specific mutagenesis method thereof. The site-specific mutagenesis method is processed to mutate a fifty-eighth amino acid or a thirty-eighth amino acid of a xylanase gene from asparagine to aspartic acid so as to form the xylanase gene with the high reaction activity in such a way as to mitigate and overcome the above problem. Advantageously, the mutated xylanase gene of the present invention is successful in increasing its reaction activity and reducing material cost.
The primary objective of this invention is to provide a mutated xylanase gene with high reaction activity. The xylanase gene with the broad pH range of reaction is generated from mutating a fifty-eighth amino acid or a thirty-eighth amino acid of a xylanase gene from asparagine to aspartic acid which can increase reaction activity of the xylanase gene.
The secondary objective of this invention is to provide a site-specific mutagenesis method for increasing the reaction activity of xylanases. The site-specific mutagenesis method is processed to mutate at least one amino acid of an enzyme gene from asparagine to aspartic acid so as to form a mutated gene of the enzyme. Accordingly, the site-specific mutagenesis method is achieved in increasing its reaction activity of the enzyme.
The mutated xylanase gene in accordance with an aspect of the present invention includes a fifty-eighth amino acid or a thirty-eighth amino acid of the xylanase gene being mutated by transforming asparagine to aspartic acid so as to form the mutated xylanase gene.
In a separate aspect of the present invention, the site-specific mutagenesis method includes the step of mutating the fifty-eighth amino acid or the thirty-eighth amino acid of the xylanase gene by transforming asparagine to aspartic acid so as to form the mutated xylanase gene.
Further scope of the applicability of the present invention will become apparent from the detailed description given hereinafter. However, it should be understood that the detailed description and specific examples, while indicating preferred embodiments of the invention, are given by way of illustration only, since various will become apparent to those skilled in the art from this detailed description.
The present invention will become more fully understood from the detailed description given hereinbelow and the accompanying drawings which are given by way of illustration only, and thus are not limitative of the present invention, and wherein:
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The wild-type xylanase gene is preserved in a plasmid so as to form a xylanase-gene-contained recombinant plasmid. Preferably, the plasmid is selected from pGEX5X-1 (Amersham Pharmacia, Sweden). The recombinant plasmids are transformed into first microorganisms which are inoculated in a cultivation liquid containing antibiotics. In a preferred embodiment, the first microorganism is selected from colon bacillus DH5 α (E. coli DH5α). In a preferred embodiment, the cultivation liquid is selected from Luria-Bertani broth cultivation liquid containing antibiotics. Preferably, the antibiotic is selected from ampicillin which has a concentration of 100 μg/mL. Next, the first microorganism is cultivated for 16 hours at 37 degrees Centigrade Preferably, a plasmid purification kit (commercially available from mini-M™ plasmid DNA extraction system, Viogene, Taiwan) is utilized to process and purify the plasmids so as to generate purified recombinant plasmids. Subsequently, two restriction enzymes are utilized to cut the purified recombinant plasmids. Preferably, the two restriction enzymes are selected from BamHI and NotI. After cutting the first plasmids, a DNA ligase is utilized to react a DNA ligation for combining the xylanase-gene-contained DNA fragments with the broken first plasmids so as to form the first recombinant plasmids containing xylanase gene. Preferably, the first recombinant plasmids are selected from pET21C (Novagen, USA) and the DNA ligase is selected from a T4 ligase (Roche, Germany). In this circumstance, the operation of the pET system is completed. Subsequently, the first recombinant plasmids are transformed into the competent cells which are confirmed by means of DNA sequencing. Preferably, the competent cells are selected from colon bacillus DH5α. Accordingly, the first step “S1” is completely executed.
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Next, a restriction enzyme is added to 20 μL of the reaction product of the polymerase chain reaction so as to cut the unmutated first recombinant plasmids in the reaction product of the polymerase chain reaction. Preferably, the restriction enzyme is selected from 1 μL of DpnI reacting at temperature of 37 degrees Centigrade for 1 hour, 65 degrees Centigrade for 10 minutes such that the second recombinant plasmids are transformed into the first microorganisms so as to form the mutated-type expression carriers. The mutated-type expression carriers are cultivated and sieved in the antibiotic-contained cultivation liquid. Finally, three transformed colonies are selected and the second recombinant plasmids are confirmed by means of sequencing. Accordingly, the first step “S2” is completely executed. Since each of the forward primer and the reverse primer has a mutation position, the reproduction of the xylanase genes in the polymerase chain reaction can generate the second recombinant plasmids containing the mutated xylanase gene with high reaction activity. In this manner, the fifty-eighth amino of the xylanase gene is mutated from asparagine to aspartic acid so as to form the mutated xylanase gene with high reaction activity. The mutated xylanse gene has the genetic sequence (sequence ID number 3) shown in
The difference between the mutated xylanase gene with high reaction activity in accordance with the present invention and the xylanase gene are verified. Each of the mutated xylanase gene with high reaction activity in accordance with the present invention and the xylanase gene is utilized to produce a wild-type xylanase gene and a mutated-type xylanase gene for use in measuring reaction activity of the enzyme. In comparison with the wild-type xylanase gene, the mutated xylanase gene in accordance with the present invention can enhance the reaction activity of the enzyme.
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A manufacturing method for the mutated-type xylanase is identical with that for the wild-type xylanase which is incorporated herein by reference. The extraction of the first recombinant plasmids from the wild-type expression carriers is only changed to the extraction of the second recombinant plasmids from the mutated-type xylanase. However, the detailed descriptions for the extractions of the second recombinant plasmids from the mutated-type xylanase are omitted for the sake of simplicity. Accordingly, the mutated -type xylanase is prepared and can be applied in the following measuring procedure.
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In TABLE 2, enzyme activities of the wild-type xylanase and the mutated-type xylanase are measured in various purification stages, and are compared. Firstly, 5 ng of the wild-type xylanase is added to a substrate. Preferably, the substrate is selected from a liquid buffer containing 20 mg/mL of soluable oat spelt xylan. The liquid buffer is selected from 50 mM of citric acid buffer which has a pH value of 6.5. After mixed, the wild-type xylanase buffer is reacted at the temperature of 50 degrees Centigrade for 10 minutes such that the xylanase can decompose the xylan contained in the substrate. Subsequently, a method of DNS (dinitrosalicylic acid) is utilized to process quantitative reduction for the redundant of the xylan remained in the substrate so as to obtain indexes of enzyme activities (U/mg). A unit activity (U) is the substrate activity of catalyzing 1 μmole per minute. Preferably, a BCA protein quantitative set (available from Pierce Ltd., USA) can be utilized to quantitate the concentration of the wild-type xylanase.
A measuring method for the activity of mutated-type xylanase is identical with that for the wild-type xylanase which is incorporated herein by reference. Hence, the detailed descriptions for the measuring method for the activity of mutated-type xylanase are omitted for the sake of simplicity. The enzyme activity of mutated-type xylanase is 2.4 times that of the wild-type xylanase, as indicated in TABLE 2. Advantageously, the xylanase gene in accordance with the present invention increase its reaction activity.
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As has been previously described, the site-specific mutagenesis method in accordance with the present invention is utilized to mutate a fifty-eighth amino acid or a thirty-eighth amino acid of an enzyme gene from asparagine to aspartic acid so as to form the enzyme gene with high reaction activity. Preferably, the enzyme is selected from oxidoreductases, transferase, hydrolase, lipase, isomerase or synthase. Preferably, the hydrolase is selected from the xylanase.
In addition to this, the mutated xylanase gene with high reaction activity in accordance with the present invention can be further utilized and incorporated into a plasmid or a chromosome by means of the recombinant DNA technology. In another embodiment, the mutated xylanase gene in accordance with the present invention can be incorporated into a cell by means of a genetic engineering process.
As has been discussed above, the conventional xylanases possess a lower degree of reaction activity such that a greater amount of the xylanases must be used. Conversely, the site-specific mutagenesis method in accordance with the present invention is processed to mutate at least one amino acid of the xylanase gene from asparagine to aspartic acid so as to form the mutated xylanase gene with high reaction activity. Advantageously, the mutated xylanase gene and the site-specific mutagenesis method in accordance with the present invention are successful in enhancing high reaction activity of the xylanase.
Although the invention has been described in detail with reference to its presently preferred embodiment, it will be understood by one of ordinary skill in the art that various modifications can be made without departing from the spirit and the scope of the invention, as set forth in the appended claims.
Number | Date | Country | Kind |
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96113280 | Apr 2007 | TW | national |