Provided herein are phenyl urea compounds, pharmaceutical compositions comprising such compounds, and methods of treating various diseases and conditions mediated by nicotinamide phosphoribosyltransferase (NAMPT) with such compounds.
The present disclosure relates to the use of modulators of nicotinamide phosphoribosyltransferase (NAMPT) and derivatives thereof, as well as enhancers or inducers of NAMPT expression, NAMPT activity or NAMPT-mediated signaling for preventing or treating a variety of pathological conditions.
Nicotinamide adenine dinucleotide (NAD+) is an essential coenzyme (enzyme cofactor) involved in fundamental biological processes of both catabolic and anabolic metabolism. As a coenzyme, NAD is associated with many oxidative enzymes (typically dehydrogenases) involved in energy metabolism, serving as a universal electron carrier. NAD exists in cells in the oxidized state (NAD+ and NADP+), and the reduced state (NADH and NADPH), acting as a chemical means to capture and transfer free energy from oxidative processes in catabolism, or to provide small packets of energy to build macromolecules in anabolism. NADH produced from the oxidation of carbohydrates, lipids, and amino acids provides reducing equivalents to the electron transport chain of mitochondria, ultimately driving the synthesis of ATP in oxidative phosphorylation.
More than 200 enzymes use either NAD+ or NADP+ as a coenzyme, and the enzymatic functions are not limited to energy metabolism. It is now appreciated that NAD+ plays a role in regulating diverse functions, including mitochondrial function, respiratory capacity, and biogenesis, mitochondrial-nuclear signaling. Further, it controls cell signaling, gene expression, DNA repair, hematopoiesis, immune function, the unfolded protein response, and autophagy. Furthermore, NAD is anti-inflammatory and is the precursor for NADPH, which is the primary source of reducing power for combating oxidative stress. A large body of literature indicates that boosting NAD levels is an effective strategy to either prevent or ameliorate a wide variety of disease states (Stromland et al., Biochem Soc Trans. 2019, 47(1):119-130; Ralto et al., Nat Rev Nephrol. 2019; Fang et al., Trends Mol Med. 2017, 23(10):899-916; Yoshino et al., Cell Metab. 2011, 14(4):528-36; Yang and Sauve, Biochim Biophys Acta. 2016, 1864:1787-1800; Verdin, Science. 2015, 350(6265):1208-13).
Levels of NAD+ and NADP+-associated enzymes play important roles in normal physiology and are altered under various disease and stress conditions including aging. Cellular NAD+ levels decrease during aging, metabolic disease, inflammatory diseases, during ischemia/reperfusion injury, and in other conditions in humans (Massudi et al., PLoS ONE. 2012, 7(7): e42357) and animals (Yang et al., Cell. 2007, 130(6):1095-107; Braidy et al. PLoS One. 2011, 26; 6(4):e19194; Peek et al. Science. 2013, 342(6158):1243417; Ghosh et al., J Neurosci. 2012, 32(17):5821-32), suggesting that modulation of cellular NAD+ level affects the speed and severity of the decline and deterioration of bodily functions. Therefore, an increase in cellular NAD+ concentration could be beneficial in the context of aging and age-related diseases.
The cellular NAD+ pool is controlled by a balance between the activity of NAD+-synthesizing and consuming enzymes. In mammals, NAD+ is synthesized from a variety of dietary sources, including one or more of its major precursors that include: tryptophan (Trp), nicotinic acid (NA), nicotinamide riboside (NR), nicotinamide mononucleotide (NMN), and nicotinamide (NAM). Based upon the bioavailability of its precursors, there are three pathways for the synthesis of NAD+ in cells: (i) from Trp by the de novo biosynthesis pathway or kynurenine pathway (ii) from NA in the Preiss-Handler pathway and (iii) from NAM, NR, and NMN in the salvage pathway (Verdin et al., Science. 2015, 350(6265):1208-13). Of these, the predominant NAD+ biosynthetic pathway involves the step of synthesis of nicotinamide mononucleotide (NMN) using nicotinamide and 5′-phosphoribosyl-pyrophosphate by the rate-limiting enzyme nicotinamide phosphoribosyl-transferase (NAMPT) that is critical to determination of longevity and responses to a variety of stresses (Fulco et al, Dev Cell. 2008, 14(5):661-73; Imai, Curr Pharm Des. 2009, 15(1):20-8; Revollo et al., J Biol Chem. 2004, 279(49):50754-63; Revollo et al., Cell Metab. 2007, November; 6(5):363-75; van der Veer et al., J Biol Chem. 2007, 282(15):10841-5; Yang et al., Cell. 2007, 130(6):1095-107). Thus, increasing the rate of NAMPT catalysis by a small molecule activator would be an effective strategy to boost NAD levels and thereby address a broad spectrum of disease states. These include cardiac diseases, chemotherapy induced tissue damage, renal diseases, metabolic diseases, muscular diseases, neurological diseases and injuries, diseases caused by impaired stem cell function, and DNA damage and primary mitochondrial disorders.
In one aspect, provided herein is a compound of Formula (II)
or a pharmaceutically acceptable salt thereof, wherein:
(1) when R4 is Z1NRaC(O)—, Z1 is other than methyl, unsubstituted cyclopropyl, —C(CH3)2CH2OH, and —CH2-thiofuran;
(2) R4 is other than 4-methylpiperazinyl, 4-phenylpiperazinyl, 4-pyridylpiperazinyl, 4-(furanylmethyl)piperazinyl,
and
(3) the compound of Formula (II) is not a compound of Table 1X; and
when p is 0, R4 is
l) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more oxo substituents,
m) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly one annular heteroatom, which is an oxygen atom, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
n) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl substituted with one or more independently selected —S(O)2—C1-C6alkyl substituents and optionally further substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
o) 5-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents,
p) 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a sulfur atom and the other of which is a nitrogen atom, wherein the 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents,
q) 5-membered heteroaryl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heteroaryl is substituted with exactly one methyl substituent,
r) 5-membered heteroaryl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 5-membered heteroaryl is substituted with one or more methyl substituents,
s) 6-membered heteroaryl comprising one or two annular heteroatoms and optionally substituted with one or more methyl substituents, wherein the 6-membered heteroaryl is other than
t) Z9—S(O)2—,
u) Z10—S(O)2—NH—,
w) Z12—CH2—O—,
y) Z14—C(H)(C1-C6 alkyl)-NH—C(O)—,
z)
or
aa)
wherein
Z9 is selected from the group consisting of cyclopropyl, C6-C12 aryl, 3- to 10-membered heterocycloalkyl or hetercycloalkenyl optionally substituted with one or more independently selected RA substituents, —NH(C1-C6 alkyl), —NH2 substituted with one or more independently selected RB substituents, and C1-C6 alkyl optionally substituted with one or more independently selected RC substituents, provided that Z9 is other than
unsubstituted methyl, or unsubstituted ethyl, wherein:
Z10 is C1-C6 alkyl substituted with one or more independently selected C6-C12 aryl substituents;
Z11 is selected from the group consisting of C3-C10 cycloalkyl and C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents, provided that, when Z11 is cyclopropyl, then R1 is other than methoxy;
Z12 is selected from the group consisting of C6-C12 aryl, 5- to 10-membered heteroaryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents or 5- to 10-membered heteroaryl substituents, and —C(O)-(3- to 10-membered heterocycloalkyl or heterocycloalkenyl);
Z13 is 5- to 10-membered heteroaryl substituted with one or more independently selected —C(O)—NH(C1-C6 alkyl) substituents; and
Z14 is 5- to 10-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents; and
R5 is hydrogen.
In another aspect, provided herein is a compound of Formula (I)
or a pharmaceutically acceptable salt thereof,
wherein:
(2) R4 is other than 4-methylpiperazinyl, 4-phenylpiperazinyl, 4-pyridylpiperazinyl, 4-(furanylmethyl)piperazinyl,
and
(3) the compound of Formula (I) is not a compound of Table 1X.
In another aspect, provided herein is a compound of Formula (I-G)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, R4, R5, and R6 are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (I-A)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, Ra, and Z1 are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (I-B)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, R5, Rb, and Z2 are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (I-C)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, Re, Rd, Re, m, and Z3 are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (I-D)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, n, and Z4 are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (I-E)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, and Z5 are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (I-F)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, Rf, and Rg are as defined for Formula (II) or any variation or embodiment thereof.
In another aspect, provided herein is a compound of Formula (II-A)
or a pharmaceutically acceptable salt thereof, wherein R1, R4, and R6 are as defined for Formula (II) or any variation or embodiment thereof.
In a further aspect, provided herein are pharmaceutical compositions comprising at least one compound of Formula (II), (I-G), (I), (I-A), (I-B), (I-C), (I-D), (I-E), (I-F), or (II-A), such as a compound of Table 1, or a stereoisomer or tautomer thereof, or a pharmaceutically acceptable salt of any of the foregoing, optionally further comprising a pharmaceutically acceptable excipient.
In another aspect, provided herein is a method of treating a disease or condition mediated by NAMPT activity in a subject in need thereof, comprising administering to the subject an effective amount of at least one compound Formula (II), (I-G), (I), (I-A), (I-B), (I-C), (I-D), (I-E), (I-F), or (II-A), such as a compound of Table 1, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition comprising at least one compound of Formula (II), (I-G), (I), (I-A), (I-B), (I-C), (I-D), (I-E), (I-F), or (II-A). In some embodiments, the disease or condition is selected from the group consisting of cancer, a hyperproliferative disease or condition, an inflammatory disease or condition, a metabolic disorder, a cardiac disease or condition, chemotherapy induced tissue damage, a renal disease, a metabolic disease, a neurological disease or injury, a neurodegenerative disorder or disease, diseases caused by impaired stem cell function, diseases caused by DNA damage, primary mitochondrial disorders, or a muscle disease or muscle wasting disorder. In some embodiments, the disease or condition is selected from the group consisting of obesity, atherosclerosis, insulin resistance, type 2 diabetes, cardiovascular disease, Alzheimer's disease, Huntington's disease, Parkinson's disease, amyotrophic lateral sclerosis, depression, Down syndrome, neonatal nerve injury, aging, axonal degeneration, carpal tunnel syndrome, Guillain-Barre syndrome, nerve damage, polio (poliomyelitis), and spinal cord injury.
Additional embodiments, features, and advantages of the present disclosure will be apparent from the following detailed description and through practice of the present disclosure.
For the sake of brevity, the disclosures of publications cited in this specification, including patents, are herein incorporated by reference.
As used in the present specification, the following words and phrases are generally intended to have the meanings as set forth below, except to the extent that the context in which they are used indicates otherwise.
Throughout this application, unless the context indicates otherwise, references to a compound of Formula (II) includes all subgroups of Formula (II) defined herein, such as Formula (I), (I-G), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-B2), (I-B3), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), including all substructures, subgenera, preferences, embodiments, examples and particular compounds defined and/or described herein. References to a compound of Formula (II) and subgroups thereof, such as Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), include ionic forms, polymorphs, pseudopolymorphs, amorphous forms, solvates, co-crystals, chelates, isomers, tautomers, oxides (e.g., N-oxides, S-oxides), esters, prodrugs, isotopes and/or protected forms thereof. In some embodiments, references to a compound of Formula (II) and subgroups thereof, such as Formula (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D32), (I-D33), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), include polymorphs, solvates, co-crystals, isomers, tautomers and/or oxides thereof. In some embodiments, references to a compound of Formula (II) and subgroups thereof, such as Formula (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), include polymorphs, solvates, and/or co-crystals thereof. In some embodiments, references to a compound of Formula (II) and subgroups thereof, such as Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), include isomers, tautomers and/or oxides thereof. In some embodiments, references to a compound of Formula (II) and subgroups thereof, such as Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-B2), (I-B3), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), include solvates thereof. Similarly, the term “salts” includes solvates of salts of compounds.
“Alkyl” encompasses straight and branched carbon chains having the indicated number of carbon atoms, for example, from 1 to 20 carbon atoms, or 1 to 8 carbon atoms, or 1 to 6 carbon atoms. For example, C1-6 alkyl encompasses both straight and branched chain alkyl of from 1 to 6 carbon atoms. When an alkyl residue having a specific number of carbons is named, all branched and straight chain versions having that number of carbons are intended to be encompassed; thus, for example, “propyl” includes n-propyl and isopropyl; and “butyl” includes n-butyl, sec-butyl, isobutyl and t-butyl. Examples of alkyl groups include, but are not limited to, methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, tert-butyl, pentyl, 2-pentyl, 3-pentyl, isopentyl, neopentyl, hexyl, 2-hexyl, 3-hexyl, and 3-methylpentyl.
When a range of values is given (e.g., C1-6 alkyl), each value within the range as well as all intervening ranges are included. For example, “C1-6 alkyl” includes C1, C2, C3, C4, C5, C6, C1-6, C2-6, C3-6, C4-6, C5-6, C1-5, C2-5, C3-5, C4-5, C1-4, C2-4, C3-4, C1-3, C2-3, and C1-2 alkyl.
“Alkenyl” refers to an unsaturated branched or straight-chain alkyl group having the indicated number of carbon atoms (e.g., 2 to 8, or 2 to 6 carbon atoms) and at least one carbon-carbon double bond. The group may be in either the cis or trans configuration (Z or E configuration) about the double bond(s). Alkenyl groups include, but are not limited to, ethenyl, propenyl (e.g., prop-1-en-1-yl, prop-1-en-2-yl, prop-2-en-1-yl (allyl), prop-2-en-2-yl), and butenyl (e.g., but-1-en-1-yl, but-1-en-2-yl, 2-methyl-prop-1-en-1-yl, but-2-en-1-yl, but-2-en-1-yl, but-2-en-2-yl, buta-1,3-dien-1-yl, buta-1,3-dien-2-yl).
“Alkynyl” refers to an unsaturated branched or straight-chain alkyl group having the indicated number of carbon atoms (e.g., 2 to 8 or 2 to 6 carbon atoms) and at least one carbon-carbon triple bond. Alkynyl groups include, but are not limited to, ethynyl, propynyl (e.g., prop-1-yn-1-yl, prop-2-yn-1-yl) and butynyl (e.g., but-1-yn-1-yl, but-1-yn-3-yl, but-3-yn-1-yl).
“Cycloalkyl” indicates a non-aromatic, fully saturated carbocyclic ring having the indicated number of carbon atoms, for example, 3 to 10, or 3 to 8, or 3 to 6 ring carbon atoms. Cycloalkyl groups may be monocyclic or polycyclic (e.g., bicyclic, tricyclic). Examples of cycloalkyl groups include cyclopropyl, cyclobutyl, cyclopentyl, and cyclohexyl, as well as bridged, caged, and spirocyclic ring groups (e.g., norbornane, bicyclo[2.2.2]octane, spiro[3.3]heptane). In addition, one ring of a polycyclic cycloalkyl group may be aromatic, provided the polycyclic cycloalkyl group is bound to the parent structure via a non-aromatic carbon. For example, a 1,2,3,4-tetrahydronaphthalen-1-yl group (wherein the moiety is bound to the parent structure via a non-aromatic carbon atom) is a cycloalkyl group, while 1,2,3,4-tetrahydronaphthalen-5-yl (wherein the moiety is bound to the parent structure via an aromatic carbon atom) is not considered a cycloalkyl group. Examples of polycyclic cycloalkyl groups consisting of a cycloalkyl group fused to an aromatic ring are described below.
“Aryl” indicates an aromatic carbocyclic ring having the indicated number of carbon atoms, for example, 6 to 12 or 6 to 10 carbon atoms. Aryl groups may be monocyclic or polycyclic (e.g., bicyclic, tricyclic). In some instances, both rings of a polycyclic aryl group are aromatic (e.g., naphthyl). In other instances, polycyclic aryl groups may include a non-aromatic ring fused to an aromatic ring, provided the polycyclic aryl group is bound to the parent structure via an atom in the aromatic ring. Thus, a 1,2,3,4-tetrahydronaphthalen-5-yl group (wherein the moiety is bound to the parent structure via an aromatic carbon atom) is considered an aryl group, while 1,2,3,4-tetrahydronaphthalen-1-yl (wherein the moiety is bound to the parent structure via a non-aromatic carbon atom) is not considered an aryl group. Similarly, a 1,2,3,4-tetrahydroquinolin-8-yl group (wherein the moiety is bound to the parent structure via an aromatic carbon atom) is considered an aryl group, while 1,2,3,4-tetrahydroquinolin-1-yl group (wherein the moiety is bound to the parent structure via a non-aromatic nitrogen atom) is not considered an aryl group. However, the term “aryl” does not encompass or overlap with “heteroaryl”, as defined herein, regardless of the point of attachment (e.g., both quinolin-5-yl and quinolin-2-yl are heteroaryl groups). In some instances, aryl is phenyl or naphthyl. In certain instances, aryl is phenyl. Additional examples of aryl groups comprising an aromatic carbon ring fused to a non-aromatic ring are described below.
“Heteroaryl” indicates an aromatic ring containing the indicated number of atoms (e.g., 5 to 12, or 5 to 10 membered heteroaryl) made up of one or more heteroatoms (e.g., 1, 2, 3 or 4 heteroatoms) selected from N, O and S and with the remaining ring atoms being carbon. Heteroaryl groups do not contain adjacent S and O atoms. In some embodiments, the total number of S and O atoms in the heteroaryl group is not more than 2. In some embodiments, the total number of S and O atoms in the heteroaryl group is not more than 1. Unless otherwise indicated, heteroaryl groups may be bound to the parent structure by a carbon or nitrogen atom, as valency permits. For example, “pyridyl” includes 2-pyridyl, 3-pyridyl and 4-pyridyl groups, and “pyrrolyl” includes 1-pyrrolyl, 2-pyrrolyl and 3-pyrrolyl groups.
In some instances, a heteroaryl group is monocyclic. Examples include pyrrole, pyrazole, imidazole, triazole (e.g., 1,2,3-triazole, 1,2,4-triazole, 1,2,4-triazole), tetrazole, furan, isoxazole, oxazole, oxadiazole (e.g., 1,2,3-oxadiazole, 1,2,4-oxadiazole, 1,3,4-oxadiazole), thiophene, isothiazole, thiazole, thiadiazole (e.g., 1,2,3-thiadiazole, 1,2,4-thiadiazole, 1,3,4-thiadiazole), pyridine, pyridazine, pyrimidine, pyrazine, triazine (e.g., 1,2,4-triazine, 1,3,5-triazine) and tetrazine.
In some instances, both rings of a polycyclic heteroaryl group are aromatic. Examples include indole, isoindole, indazole, benzoimidazole, benzotriazole, benzofuran, benzoxazole, benzoisoxazole, benzoxadiazole, benzothiophene, benzothiazole, benzoisothiazole, benzothiadiazole, 1H-pyrrolo[2,3-b]pyridine, 1H-pyrazolo[3,4-b]pyridine, 3H-imidazo[4,5-b]pyridine, 3H-[1,2,3]triazolo[4,5-b]pyridine, 1H-pyrrolo[3,2-b]pyridine, 1H-pyrazolo[4,3-b]pyridine, 1H-imidazo[4,5-b]pyridine, 1H-[1,2,3]triazolo[4,5-b]pyridine, 1H-pyrrolo[2,3-c]pyridine, 1H-pyrazolo[3,4-c]pyridine, 3H-imidazo[4,5-c]pyridine, 3H-[1,2,3]triazolo[4,5-c]pyridine, 1H-pyrrolo[3,2-c]pyridine, 1H-pyrazolo[4,3-c]pyridine, 1H-imidazo[4,5-c]pyridine, 1H-[1,2,3]triazolo[4,5-c]pyridine, furo[2,3-b]pyridine, oxazolo[5,4-b]pyridine, isoxazolo[5,4-b]pyridine, [1,2,3]oxadiazolo[5,4-b]pyridine, furo[3,2-b]pyridine, oxazolo[4,5-b]pyridine, isoxazolo[4,5-b]pyridine, [1,2,3]oxadiazolo[4,5-b]pyridine, furo[2,3-c]pyridine, oxazolo[5,4-c]pyridine, isoxazolo[5,4-c]pyridine, [1,2,3]oxadiazolo[5,4-c]pyridine, furo[3,2-c]pyridine, oxazolo[4,5-c]pyridine, isoxazolo[4,5-c]pyridine, [1,2,3]oxadiazolo[4,5-c]pyridine, thieno[2,3-b]pyridine, thiazolo[5,4-b]pyridine, isothiazolo[5,4-b]pyridine, [1,2,3]thiadiazolo[5,4-b]pyridine, thieno[3,2-b]pyridine, thiazolo[4,5-b]pyridine, isothiazolo[4,5-b]pyridine, [1,2,3]thiadiazolo[4,5-b]pyridine, thieno[2,3-c]pyridine, thiazolo[5,4-c]pyridine, isothiazolo[5,4-c]pyridine, [1,2,3]thiadiazolo[5,4-c]pyridine, thieno[3,2-c]pyridine, thiazolo[4,5-c]pyridine, isothiazolo[4,5-c]pyridine, [1,2,3]thiadiazolo[4,5-c]pyridine, quinoline, isoquinoline, cinnoline, quinazoline, quinoxaline, phthalazine, naphthyridine (e.g., 1,8-naphthyridine, 1,7-naphthyridine, 1,6-naphthyridine, 1,5-naphthyridine, 2,7-naphthyridine, 2,6-naphthyridine), imidazo[1,2-a]pyridine, 1H-pyrazolo[3,4-d]thiazole, 1H-pyrazolo[4,3-d]thiazole and imidazo[2,1-b]thiazole.
In other instances, polycyclic heteroaryl groups may include a non-aromatic ring (e.g., cycloalkyl, cycloalkenyl, heterocycloalkyl, heterocycloalkenyl) fused to a heteroaryl ring, provided the polycyclic heteroaryl group is bound to the parent structure via an atom in the aromatic ring. For example, a 4,5,6,7-tetrahydrobenzo[d]thiazol-2-yl group (wherein the moiety is bound to the parent structure via an aromatic carbon atom) is considered a heteroaryl group, while 4,5,6,7-tetrahydrobenzo[d]thiazol-5-yl (wherein the moiety is bound to the parent structure via a non-aromatic carbon atom) is not considered a heteroaryl group. Examples of polycyclic heteroaryl groups consisting of a heteroaryl ring fused to a non-aromatic ring are described below.
“Heterocycloalkyl” indicates a non-aromatic, fully saturated ring having the indicated number of atoms (e.g., 3 to 10, or 3 to 7, membered heterocycloalkyl) made up of one or more heteroatoms (e.g., 1, 2, 3 or 4 heteroatoms) selected from N, O and S and with the remaining ring atoms being carbon. Heterocycloalkyl groups may be monocyclic or polycyclic (e.g., bicyclic, tricyclic). Examples of heterocycloalkyl groups include oxiranyl, aziridinyl, azetidinyl, pyrrolidinyl, imidazolidinyl, pyrazolidinyl, piperidinyl, piperazinyl, morpholinyl and thiomorpholinyl. Examples include thiomorpholine S-oxide and thiomorpholine S,S-dioxide. Examples of spirocyclic heterocycloalkyl groups include azaspiro[3.3]heptane, diazaspiro[3.3]heptane, diazaspiro[3.4]octane, and diazaspiro[3.5]nonane. In addition, one ring of a polycyclic heterocycloalkyl group may be aromatic (e.g., aryl or heteroaryl), provided the polycyclic heterocycloalkyl group is bound to the parent structure via a non-aromatic carbon or nitrogen atom. For example, a 1,2,3,4-tetrahydroquinolin-1-yl group (wherein the moiety is bound to the parent structure via a non-aromatic nitrogen atom) is considered a heterocycloalkyl group, while 1,2,3,4-tetrahydroquinolin-8-yl group (wherein the moiety is bound to the parent structure via an aromatic carbon atom) is not considered a heterocycloalkyl group. Examples of polycyclic heterocycloalkyl groups consisting of a heterocycloalkyl group fused to an aromatic ring are described below.
“Heterocycloalkenyl” indicates a non-aromatic ring having the indicated number of atoms (e.g., 3 to 10, or 3 to 7, membered heterocycloalkyl) made up of one or more heteroatoms (e.g., 1, 2, 3 or 4 heteroatoms) selected from N, O and S and with the remaining ring atoms being carbon, and at least one double bond derived by the removal of one molecule of hydrogen from adjacent carbon atoms, adjacent nitrogen atoms, or adjacent carbon and nitrogen atoms of the corresponding heterocycloalkyl. Heterocycloalkenyl groups may be monocyclic or polycyclic (e.g., bicyclic, tricyclic). Examples of heterocycloalkenyl groups include dihydrofuranyl (e.g., 2,3-dihydrofuranyl, 2,5-dihydrofuranyl), dihydrothiophenyl (e.g., 2,3-dihydrothiophenyl, 2,5-dihydrothiophenyl), dihydropyrrolyl (e.g., 2,3-dihydro-1H-pyrrolyl, 2,5-dihydro-1H-pyrrolyl), dihydroimidazolyl (e.g., 2,3-dihydro-1H-imidazolyl, 4,5-dihydro-1H-imidazolyl), pyranyl, dihydropyranyl (e.g., 3,4-dihydro-2H-pyranyl, 3,6-dihydro-2H-pyranyl), tetrahydropyridinyl (e.g., 1,2,3,4-tetrahydropyridinyl, 1,2,3,6-tetrahydropyridinyl) and dihydropyridine (e.g., 1,2-dihydropyridine, 1,4-dihydropyridine). In addition, one ring of a polycyclic heterocycloalkenyl group may be aromatic (e.g., aryl or heteroaryl), provided the polycyclic heterocycloalkenyl group is bound to the parent structure via a non-aromatic carbon or nitrogen atom. For example, a 1,2-dihydroquinolin-1-yl group (wherein the moiety is bound to the parent structure via a non-aromatic nitrogen atom) is considered a heterocycloalkenyl group, while 1,2-dihydroquinolin-8-yl group (wherein the moiety is bound to the parent structure via an aromatic carbon atom) is not considered a heterocycloalkenyl group. Examples of polycyclic heterocycloalkenyl groups consisting of a heterocycloalkenyl group fused to an aromatic ring are described below.
Examples of polycyclic rings consisting of an aromatic ring (e.g., aryl or heteroaryl) fused to a non-aromatic ring (e.g., cycloalkyl, cycloalkenyl, heterocycloalkyl, heterocycloalkenyl) include indenyl, 2,3-dihydro-1H-indenyl, 1,2,3,4-tetrahydronaphthalenyl, benzo[1,3]dioxolyl, tetrahydroquinolinyl, 2,3-dihydrobenzo[1,4]dioxinyl, indolinyl, isoindolinyl, 2,3-dihydro-1H-indazolyl, 2,3-dihydro-1H-benzo[d]imidazolyl, 2,3-dihydrobenzofuranyl, 1,3-dihydroisobenzofuranyl, 1,3-dihydrobenzo[c]isoxazolyl, 2,3-dihydrobenzo[d]isoxazolyl, 2,3-dihydrobenzo[d]oxazolyl, 2,3-dihydrobenzo[b]thiophenyl, 1,3-dihydrobenzo[c]thiophenyl, 1,3-dihydrobenzo[c]isothiazolyl, 2,3-dihydrobenzo[d]isothiazolyl, 2,3-dihydrobenzo[d]thiazolyl, 5,6-dihydro-4H-cyclopenta[d]thiazolyl, 4,5,6,7-tetrahydrobenzo[d]thiazolyl, 5,6-dihydro-4H-pyrrolo[3,4-d]thiazolyl, 4,5,6,7-tetrahydrothiazolo[5,4-c]pyridinyl, indolin-2-one, indolin-3-one, isoindolin-1-one, 1,2-dihydroindazol-3-one, 1H-benzo[d]imidazol-2(3H)-one, benzofuran-2(3H)-one, benzofuran-3(2H)-one, isobenzofuran-1(3H)-one, benzo[c]isoxazol-3(1H)-one, benzo[d]isoxazol-3(2H)-one, benzo[d]oxazol-2(3H)-one, benzo[b]thiophen-2(3H)-one, benzo[b]thiophen-3(2H)-one, benzo[c]thiophen-1(3H)-one, benzo[c]isothiazol-3(1H)-one, benzo[d]isothiazol-3(2H)-one, benzo[d]thiazol-2(3H)-one, 4,5-dihydropyrrolo[3,4-d]thiazol-6-one, 1,2-dihydropyrazolo[3,4-d]thiazol-3-one, quinolin-4(3H)-one, quinazolin-4(3H)-one, quinazoline-2,4(1H,3H)-dione, quinoxalin-2(1H)-one, quinoxaline-2,3(1H,4H)-dione, cinnolin-4(3H)-one, pyridin-2(1H)-one, pyrimidin-2(1H)-one, pyrimidin-4(3H)-one, pyridazin-3(2H)-one, 1H-pyrrolo[3,2-b]pyridin-2(3H)-one, 1H-pyrrolo[3,2-c]pyridin-2(3H)-one, 1H-pyrrolo[2,3-c]pyridin-2(3H)-one, 1H-pyrrolo[2,3-b]pyridin-2(3H)-one, 1,2-dihydropyrazolo[3,4-d]thiazol-3-one and 4,5-dihydropyrrolo[3,4-d]thiazol-6-one. As discussed herein, whether each ring is considered an aryl, heteroaryl, cycloalkyl, cycloalkenyl, heterocycloalkyl or heterocycloalkenyl group is determined by the atom through which the moiety is bound to the parent structure.
“Halogen” or “halo” refers to fluorine, chlorine, bromine or iodine.
Unless otherwise indicated, compounds disclosed and/or described herein include all possible enantiomers, diastereomers, meso isomers and other stereoisomeric forms, including racemic mixtures, optically pure forms and intermediate mixtures thereof. Enantiomers, diastereomers, meso isomers and other stereoisomeric forms can be prepared using chiral synthons or chiral reagents, or resolved using conventional techniques. Unless specified otherwise, when the compounds disclosed and/or described herein contain olefinic double bonds or other centers of geometric asymmetry, it is intended that the compounds include both E and Z isomers. When the compounds described herein contain moieties capable of tautomerization, and unless specified otherwise, it is intended that the compounds include all possible tautomers.
“Protecting group” has the meaning conventionally associated with it in organic synthesis, i.e., a group that selectively blocks one or more reactive sites in a multifunctional compound such that a chemical reaction can be carried out selectively on another unprotected reactive site, and such that the group can readily be removed after the selective reaction is complete. A variety of protecting groups are disclosed, for example, in T. H. Greene and P. G. M. Wuts, Protective Groups in Organic Synthesis, Third Edition, John Wiley & Sons, New York (1999). For example, a “hydroxy protected form” contains at least one hydroxy group protected with a hydroxy protecting group. Likewise, amines and other reactive groups may similarly be protected.
The term “pharmaceutically acceptable salt” refers to a salt of any of the compounds herein which are known to be non-toxic and are commonly used in the pharmaceutical literature. In some embodiments, the pharmaceutically acceptable salt of a compound retains the biological effectiveness of the compounds described herein and are not biologically or otherwise undesirable. Examples of pharmaceutically acceptable salts can be found in Berge et al., Pharmaceutical Salts, J. Pharmaceutical Sciences, January 1977, 66(1), 1-19. Pharmaceutically acceptable acid addition salts can be formed with inorganic acids and organic acids. Inorganic acids from which salts can be derived include, for example, hydrochloric acid, hydrobromic acid, sulfuric acid, nitric acid, and phosphoric acid. Organic acids from which salts can be derived include, for example, acetic acid, propionic acid, glycolic acid, pyruvic acid, lactic acid, oxalic acid, malic acid, maleic acid, malonic acid, succinic acid, fumaric acid, tartaric acid, citric acid, benzoic acid, cinnamic acid, mandelic acid, methanesulfonic acid, ethanesulfonic acid, 2-hydroxyethylsulfonic acid, p-toluenesulfonic acid, stearic acid and salicylic acid. Pharmaceutically acceptable base addition salts can be formed with inorganic and organic bases. Inorganic bases from which salts can be derived include, for example, sodium, potassium, lithium, ammonium, calcium, magnesium, iron, zinc, copper, manganese, and aluminum. Organic bases from which salts can be derived include, for example, primary, secondary, and tertiary amines; substituted amines including naturally occurring substituted amines; cyclic amines; and basic ion exchange resins. Examples of organic bases include isopropylamine, trimethylamine, diethylamine, triethylamine, tripropylamine, and ethanolamine. In some embodiments, the pharmaceutically acceptable base addition salt is selected from ammonium, potassium, sodium, calcium, and magnesium salts.
If the compound described herein is obtained as an acid addition salt, the free base can be obtained by basifying a solution of the acid salt. Conversely, if the compound is a free base, an addition salt, particularly a pharmaceutically acceptable addition salt, may be produced by dissolving the free base in a suitable organic solvent and treating the solution with an acid, in accordance with conventional procedures for preparing acid addition salts from base compounds (see, e.g., Berge et al., Pharmaceutical Salts, J. Pharmaceutical Sciences, January 1977, 66(1), 1-19). Those skilled in the art will recognize various synthetic methodologies that may be used to prepare pharmaceutically acceptable addition salts.
A “solvate” is formed by the interaction of a solvent and a compound. Suitable solvents include, for example, water and alcohols (e.g., ethanol). Solvates include hydrates having any ratio of compound to water, such as monohydrates, dihydrates and hemi-hydrates.
The term “substituted” means that the specified group or moiety bears one or more substituents including, but not limited to, substituents such as alkoxy, acyl, acyloxy, carbonylalkoxy, acylamino, amino, aminoacyl, aminocarbonylamino, aminocarbonyloxy, cycloalkyl, cycloalkenyl, aryl, heteroaryl, aryloxy, cyano, azido, halo, hydroxyl, nitro, carboxyl, thiol, thioalkyl, cycloalkyl, cycloalkenyl, alkyl, alkenyl, alkynyl, heterocycloalkyl, heterocycloalkenyl, aralkyl, aminosulfonyl, sulfonylamino, sulfonyl, oxo, carbonylalkylenealkoxy and the like. The term “unsubstituted” means that the specified group bears no substituents. Where the term “substituted” is used to describe a structural system, the substitution is meant to occur at any valency-allowed position on the system. When a group or moiety bears more than one substituent, it is understood that the substituents may be the same or different from one another. In some embodiments, a substituted group or moiety bears from one to five substituents. In some embodiments, a substituted group or moiety bears one substituent. In some embodiments, a substituted group or moiety bears two substituents. In some embodiments, a substituted group or moiety bears three substituents. In some embodiments, a substituted group or moiety bears four substituents. In some embodiments, a substituted group or moiety bears five substituents.
By “optional” or “optionally” is meant that the subsequently described event or circumstance may or may not occur, and that the description includes instances where the event or circumstance occurs and instances in which it does not. For example, “optionally substituted alkyl” encompasses both “alkyl” and “substituted alkyl” as defined herein. It will be understood by those skilled in the art, with respect to any group containing one or more substituents, that such groups are not intended to introduce any substitution or substitution patterns that are sterically impractical, synthetically non-feasible, and/or inherently unstable. It will also be understood that where a group or moiety is optionally substituted, the disclosure includes both embodiments in which the group or moiety is substituted and embodiments in which the group or moiety is unsubstituted.
The compounds disclosed and/or described herein can be enriched isotopic forms, e.g., enriched in the content of 2H, 3H, 11C, 13C and/or 14C. In one embodiment, the compound contains at least one deuterium atom. Such deuterated forms can be made, for example, by the procedure described in U.S. Pat. Nos. 5,846,514 and 6,334,997. Such deuterated compounds may improve the efficacy and increase the duration of action of compounds disclosed and/or described herein. Deuterium substituted compounds can be synthesized using various methods, such as those described in: Dean, D., Recent Advances in the Synthesis and Applications of Radiolabeled Compounds for Drug Discovery and Development, Curr. Pharm. Des., 2000; 6(10); Kabalka, G. et al., The Synthesis of Radiolabeled Compounds via Organometallic Intermediates, Tetrahedron, 1989, 45(21), 6601-21; and Evans, E., Synthesis of radiolabeled compounds, J. Radioanal. Chem., 1981, 64(1-2), 9-32.
The term “pharmaceutically acceptable carrier” or “pharmaceutically acceptable excipient” includes any and all solvents, dispersion media, coatings, antibacterial and antifungal agents, isotonic and absorption delaying agents and the like. The use of such media and agents for pharmaceutically active substances is well known in the art. Except insofar as any conventional media or agent is incompatible with the active ingredient, its use in pharmaceutical compositions is contemplated. Supplementary active ingredients can also be incorporated into the pharmaceutical compositions.
The terms “patient,” “individual,” and “subject” refer to an animal, such as a mammal, bird, or fish. In some embodiments, the patient or subject is a mammal. Mammals include, for example, mice, rats, dogs, cats, pigs, sheep, horses, cows and humans. In some embodiments, the patient or subject is a human, for example a human that has been or will be the object of treatment, observation or experiment. The compounds, compositions and methods described herein can be useful in both human therapy and veterinary applications.
As used herein, the term “therapeutic” refers to the ability to modulate nicotinamide phosphoribosyltransferase (NAMPT). As used herein, “modulation” refers to a change in activity as a direct or indirect response to the presence of a chemical entity as described herein, relative to the activity of in the absence of the chemical entity. The change may be an increase in activity or a decrease in activity, and may be due to the direct interaction of the chemical entity with the a target or due to the interaction of the chemical entity with one or more other factors that in turn affect the target's activity. For example, the presence of the chemical entity may, for example, increase or decrease the target activity by directly binding to the target, by causing (directly or indirectly) another factor to increase or decrease the target activity, or by (directly or indirectly) increasing or decreasing the amount of target present in the cell or organism.
The term “therapeutically effective amount” or “effective amount” refers to that amount of a compound disclosed and/or described herein that is sufficient to affect treatment, as defined herein, when administered to a patient in need of such treatment. A therapeutically effective amount of a compound may be an amount sufficient to treat a disease responsive to modulation of nicotinamide phosphoribosyltransferase (NAMPT). The therapeutically effective amount will vary depending upon, for example, the subject and disease condition being treated, the weight and age of the subject, the severity of the disease condition, the particular compound, the dosing regimen to be followed, timing of administration, the manner of administration, all of which can readily be determined by one of ordinary skill in the art. The therapeutically effective amount may be ascertained experimentally, for example by assaying blood concentration of the chemical entity, or theoretically, by calculating bioavailability.
“Treatment” (and related terms, such as “treat”, “treated”, “treating”) includes one or more of: preventing a disease or disorder (i.e., causing the clinical symptoms of the disease or disorder not to develop); inhibiting a disease or disorder; slowing or arresting the development of clinical symptoms of a disease or disorder; and/or relieving a disease or disorder (i.e., causing relief from or regression of clinical symptoms). The term encompasses situations where the disease or disorder is already being experienced by a patient, as well as situations where the disease or disorder is not currently being experienced but is expected to arise. The term covers both complete and partial reduction or prevention of the condition or disorder, and complete or partial reduction of clinical symptoms of a disease or disorder. Thus, compounds described and/or disclosed herein may prevent an existing disease or disorder from worsening, assist in the management of the disease or disorder, or reduce or eliminate the disease or disorder. When used in a prophylactic manner, the compounds disclosed and/or described herein may prevent a disease or disorder from developing or lessen the extent of a disease or disorder that may develop.
Compounds and salts thereof (such as pharmaceutically acceptable salts) are detailed herein, including in the Brief Summary and in the appended claims. Also provided are the use of all of the compounds described herein, including any and all stereoisomers, including geometric isomers (cis/trans), E/Z isomers, enantiomers, diastereomers, and mixtures thereof in any ratio including racemic mixtures, salts and solvates of the compounds described herein, as well as methods of making such compounds. Any compound described herein may also be referred to as a drug.
In one aspect, provided are compounds of Formula (II)
or a pharmaceutically acceptable salt thereof, wherein:
(1) when R4 is Z1NRaC(O)—, Z1 is other than methyl, unsubstituted cyclopropyl, —C(CH3)2CH2OH, and —CH2-thiofuran;
(2) R4 is other than 4-methylpiperazinyl, 4-phenylpiperazinyl, 4-pyridylpiperazinyl, 4-(furanylmethyl)piperazinyl,
and
(3) the compound of Formula (II) is not a compound of Table 1X; and when p is 0, R4 is
l) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more oxo substituents,
m) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly one annular heteroatom, which is an oxygen atom, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
n) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl substituted with one or more independently selected —S(O)2—C1-C6alkyl substituents and optionally further substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
o) 5-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents,
p) 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a sulfur atom and the other of which is a nitrogen atom, wherein the 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents,
q) 5-membered heteroaryl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heteroaryl is substituted with exactly one methyl substituent,
r) 5-membered heteroaryl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 5-membered heteroaryl is substituted with one or more methyl substituents,
s) 6-membered heteroaryl comprising one or two annular heteroatoms and optionally substituted with one or more methyl substituents, wherein the 6-membered heteroaryl is other than
t) Z9—S(O)2—,
u) Z10—S(O)2—NH—,
w) Z12—CH2—O—,
y) Z14—C(H)(C1-C6 alkyl)-NH—C(O)—,
z)
or
aa)
wherein
Z9 is selected from the group consisting of cyclopropyl, C6-C12 aryl, 3- to 10-membered heterocycloalkyl or hetercycloalkenyl optionally substituted with one or more independently selected RA substituents, —NH(C1-C6 alkyl), —NH2 substituted with one or more independently selected RB substituents, and C1-C6 alkyl optionally substituted with one or more independently selected RC substituents, provided that Z9 is other than
unsubstituted methyl, or unsubstituted ethyl, wherein:
Z10 is C1-C6 alkyl substituted with one or more independently selected C6-C12 aryl substituents;
Z11 is selected from the group consisting of C3-C10 cycloalkyl and C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents, provided that, when Z11 is cyclopropyl, then R1 is other than methoxy;
Z12 is selected from the group consisting of C6-C12 aryl, 5- to 10-membered heteroaryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents or 5- to 10-membered heteroaryl substituents, and —C(O)-(3- to 10-membered heterocycloalkyl or heterocycloalkenyl);
Z13 is 5- to 10-membered heteroaryl substituted with one or more independently selected —C(O)—NH(C1-C6 alkyl) substituents; and
Z14 is 5- to 10-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents; and
R5 is hydrogen.
In one aspect, provided are compounds of Formula (I-G)
or a pharmaceutically acceptable salt thereof, wherein:
(1) when R4 is Z1NRaC(O)—, Z1 is other than methyl, unsubstituted cyclopropyl, —C(CH3)2CH2OH, and —CH2-thiofuran;
(2) R4 is other than 4-methylpiperazinyl, 4-phenylpiperazinyl, 4-pyridylpiperazinyl, 4-(furanylmethyl)piperazinyl,
and
(3) the compound of Formula (I-G) is not a compound of Table 1X.
In one aspect, provided are compounds of Formula (I)
or a pharmaceutically acceptable salt thereof,
wherein:
In some embodiments of Formula (II), Formula (I-G), or Formula (I), (1) when R4 is Z1NRaC(O)—, Z1 is other than methyl, unsubstituted cyclopropyl, —C(CH3)2CH2OH, and —CH2-thiofuran; (2) R4 is other than 4-methylpiperazinyl, 4-phenylpiperazinyl, 4-pyridylpiperazinyl, 4-(furanylmethyl)piperazinyl,
and (3) the compound of Formula (II), Formula (I-G), or Formula (I) is not a compound of Table 1X.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R1 is halo. For example, in some embodiments, R1 is fluoro. In some embodiments, R1 is chloro. In some embodiments, R1 is bromo. In other embodiments, R1 is iodo.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R1 is methoxy.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R2 is hydrogen. In some embodiments, R2 is C1-C6 alkyl. For example, in some embodiments, R2 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R3 is hydrogen. In some embodiments, R3 is C1-C6 alkyl. For example, in some embodiments, R3 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), Rs is hydrogen. In some embodiments, Rb, if present, is taken together with Rs and the intervening atoms to form a 5- to 6-membered heterocycloalkyl or heterocycloalkenyl ring. In some embodiments, R5 is halo. In some embodiments, R5 is fluoro. In some embodiments, R5 is chloro. In some embodiments, R5 is bromo. In some embodiments, R5 is iodo.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R6 is hydrogen. In some embodiments of Formula (II), Formula (I-G), or Formula (I), R6 is halo. In some embodiments of Formula (II), Formula (I-G), or Formula (I), R6 is fluoro. In some embodiments of Formula (II), Formula (I-G), or Formula (I), R6 is chloro. In some embodiments of Formula (II), Formula (I-G), or Formula (I), R6 is bromo. In some embodiments of Formula (II), Formula (I-G), or Formula (I), R6 is iodo.
In some embodiments of a compound of Formula (II), p is 1. In some embodiments of a compound of Formula (II), p is 1, and the compound is of Formula (I-G). In other embodiments of a compound of Formula (II), p is 1, and the compound is of Formula (I).
In some embodiments of Formula (II), Formula (I-G) or Formula (I), R4 is selected from the group consisting of Z1NRaC(O)—, Z2C(O)NRb—, Z3(CRcRd)mNRe—, Z4S(O)2(CH2)n—, Z5OC(O)—, and NRfRgC(O)—. In some embodiments, R4 is Z1NRaC(O)— or NRfRgC(O)—. In some embodiments, R4 is Z1NRaC(O)— or Z2C(O)NRb—.
In another aspect, the compound of Formula (II), Formula (I-G) or Formula (I) is a compound of Formula (I-A)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, Ra, and Z1 are as defined for Formula (II), Formula (I-G), or Formula (I), or any variation or embodiment thereof.
In some embodiments, the compound is a compound of Formula (I-A1), (I-A2), (I-A3), or (I-A4)
or a pharmaceutically acceptable salt thereof, wherein R1, Ra, and Z1 are as defined for Formula (II), Formula (I-G), Formula (I), or Formula (I-A), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-A), Ra is hydrogen. In some embodiments, Ra is C1-C6 alkyl. For example, in some embodiments, Ra is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-A), Z1 is Rz. In some embodiments, Z1 is selected from the group consisting of:
C1-C6 alkyl optionally substituted with one or more substituents independently selected from the group consisting of —OH, C3-C6 cycloalkyl, C6-C12 aryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 10-membered heteroaryl, wherein the C6-C12 aryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 10-membered heteroaryl are each independently optionally substituted with one or more substituents independently selected from the group consisting of C1-C6 alkyl and C1-C6 alkoxy;
C3-C6 cycloalkyl optionally substituted with one or more substituents independently selected from the group consisting of C6-C12 aryl, C1-C6 alkyl, and C1-C6 alkoxy optionally substituted with 5- or 10-membered heteroaryl, wherein the 5- or 10-membered heteroaryl is optionally further substituted with C1-C6 alkyl; and
3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of —C1-C6 alkyl and —C(O)OC1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with C6-C12 aryl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-A), Z1 is C1-C6 alkyl. In some embodiments, Z1 is unsubstituted C1-C6 alkyl. In some embodiments, Z1 is C1-C6 alkyl optionally substituted with one or more substituents independently selected from the group consisting of —OH, C3-C6 cycloalkyl, C6-C12 aryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 10-membered heteroaryl, wherein the C6-C12 aryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 10-membered heteroaryl are each independently optionally substituted with one or more substituents independently selected from the group consisting of C1-C6 alkyl and C1-C6 alkoxy.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-A), Z1 is C3-C6 cycloalkyl. In some embodiments, Z1 is unsubstituted C3-C6 cycloalkyl. In some embodiments, Z1 is C3-C6 cycloalkyl substituted with one or more substituents independently selected from the group consisting of C6-C12 aryl, C1-C6 alkyl, and C1-C6 alkoxy optionally substituted with 5- or 10-membered heteroaryl, wherein the 5- or 10-membered heteroaryl is optionally further substituted with C1-C6 alkyl. In some embodiments, Z1 is C3-C6 cycloalkyl optionally substituted with one or more groups independently selected from methoxy, ethoxy, and phenyl. In some embodiments, Z1 is C3-C6 cycloalkyl optionally substituted with C1-C6 alkoxy optionally substituted with 5- or 10-membered heteroaryl, wherein the 5- or 10-membered heteroaryl is optionally further substituted with C1-C6 alkyl
In some embodiments, Z1 is C3-C6 cycloalkyl optionally substituted phenyl. In some embodiments, Z1 is cyclopropyl, cyclobutyl, cyclopentyl, or cyclohexyl, each optionally substituted with one or more substituents independently selected from the group consisting of C6-C12 aryl, C1-C6 alkyl, and C1-C6 alkoxy optionally substituted with 5- or 10-membered heteroaryl, wherein the 5- or 10-membered heteroaryl is optionally further substituted with C1-C6 alkyl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-A), Z1 is 3- to 10-membered heterocycloalkyl or heterocycloalkenyl. In some embodiments, Z1 is a 3- to 10-membered heterocycloalkyl or heterocycloalkenyl containing one or more heteroatoms independently selected from the group consisting of N, O, and S. In some embodiments, Z1 is a 3- to 6-membered heterocycloalkyl or heterocycloalkenyl. In some embodiments, Z1 is 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of —C1-C6 alkyl and —C(O)OC1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with C6-C12 aryl. In some embodiments, Z1 is
each optionally substituted with one or more substituents independently selected from the group consisting of —C1-C6 alkyl and —C(O)OC1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with C6-C12 aryl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-A), Z1 is C1-C6 alkyl. In certain embodiments, Z1 is ethyl. In some embodiments, Z1 is selected from the group consisting of ethyl,
In another aspect, the compound of Formula (II), Formula (I-G), or Formula (I) is a compound of Formula (I-B)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, R5, Rb, and Z2 are as defined for Formula (II), Formula (I-G), or Formula (I), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Rb is hydrogen. In some embodiments, Rb is C1-C6 alkyl. For example, in some embodiments, Rb is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl. In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Rs is hydrogen. In other embodiments, Rb is taken together with Rs and the intervening atoms to form a 5- to 6-membered heterocycloalkyl or heterocycloalkenyl ring. In some embodiments of Formula (II) or Formula (I-G), R5 is halo. In some embodiments, R5 is fluoro. In some embodiments, R5 is chloro. In some embodiments, R5 is bromo. In some embodiments, R5 is iodo.
In some embodiments, the compound is a compound of Formula (I-B1), (I-B2), or (I-B3)
or a pharmaceutically acceptable salt thereof, wherein R1 and Z2 are as defined for Formula (II), Formula (I-G), Formula (I), or Formula (I-B), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is hydrogen. In some embodiments, Z2 is Rz. In some embodiments, Z2 is selected from the group consisting of
C1-C6 alkyl optionally substituted with one or more substituents independently selected from the group consisting of C3-C6 cycloalkyl and 5- to 10-membered heteroaryl;
C3-C6 cycloalkyl optionally substituted with one or more substituents independently selected from the group consisting of C1-C6 alkyl and C1-C6 alkoxy;
C1-C6 alkoxy;
3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more independently selected —C1-C6 alkyl substituents;
C6-C12 aryl; and
5- to 10-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is C1-C6 alkyl optionally substituted with one or more substituents independently selected from the group consisting of C3-C6 cycloalkyl and 5- to 10-membered heteroaryl. In some embodiments, Z2 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl, each optionally substituted with one or more substituents independently selected from the group consisting of C3-C6 cycloalkyl and 5- to 10-membered heteroaryl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is C3-C6 cycloalkyl optionally substituted with one or more substituents independently selected from the group consisting of C1-C6 alkyl and C1-C6 alkoxy. In some embodiments, Z2 is cyclopropyl, cyclobutyl, cyclopentyl, or cyclohexyl, each optionally substituted with one or more substituents independently selected from the group consisting of C1-C6 alkyl and C1-C6 alkoxy.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is C1-C6 alkoxy. In some embodiments, Z2 is methoxy, ethoxy, propoxy, isopropoxy, n-butoxy, sec-butoxy, or tert-butoxy.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is a 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is a 4- to 6-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is an azetidinyl group optionally substituted with one or more —C1-C6 alkyl substituents or a tetrahydrofuranyl group optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is
each optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is
In some embodiments, Z2 is
In some embodiments, Z2 is
each optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is
optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is C6-C12 aryl. For instance, in some embodiments, Z2 is phenyl or naphthyl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-B), Z2 is 5- to 10-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, Z2 is a 5- to 6-membered heteroaryl optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is a pyridyl group optionally substituted with one or more independently selected —C1-C6 alkyl substituents. In some embodiments, Z2 is a pyridyl group optionally substituted with methyl, ethyl, or isopropyl. In some embodiments, Z2 is a pyridyl group substituted with methyl. In other embodiments, Z2 is a pyridyl group substituted with isopropyl. In some embodiments, Z2 is selected from the group consisting of
In some embodiments, Z2 is
In some embodiments, Z2 is selected from the group consisting of ethyl,
In some embodiments, Z2 is
In another aspect, the compound of Formula (II), Formula (I-G), or Formula (I) is a compound of Formula (I-C).
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, Re, Rd, Re, m, and Z3 are as defined for Formula (I-G) or Formula (I), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-C), m is 0. In other embodiments, m is 1. In some embodiments of Formula (I-G), Formula (I), or Formula (I-C), Rc is hydrogen. In other embodiments, Re is C1-C6 alkyl. In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-C), Rd is hydrogen. In other embodiments, Rd is C1-C6 alkyl. In some embodiments, Re and Rd together with the carbon to which they are attached form a C3-C6 cycloalkyl.
In some embodiments, the compound is a compound of Formula (I-C1), (I-C2), (I-C3), or (I-C4)
or a pharmaceutically acceptable salt thereof, wherein R1, Re, and Z3 are as defined for Formula (II), Formula (I-G), Formula (I), or Formula (I-C), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-C), Re is hydrogen. In other embodiments, Re is C1-C6 alkyl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-C), Z3 is hydrogen. In some embodiments, Z3 is Rz. In some embodiments, Z3 is selected from the group consisting of C3-C6 cycloalkyl; 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with —C1-C6 alkyl or oxo; C6-C12 aryl; and 5- to 10-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, Z3 is 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with —C1-C6 alkyl or oxo. In some embodiments, Z3 is selected from the group consisting of
In some embodiments, Z3 is
In another aspect, the compound of Formula (II), Formula (I-G), or Formula (I) is a compound of Formula (ID)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, n, and Z4 are as defined for Formula (II), Formula (I-G) or Formula (I) or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-D), n is 0. In some embodiments, n is 1. In other embodiments, n is 2.
In some embodiments, the compound is a compound of Formula (I-D1) or (I-D2)
or a pharmaceutically acceptable salt thereof, wherein R1 and Z4 are as defined for Formula (I-G), Formula (I), or Formula (I-D), or any variation or embodiment thereof.
In some embodiments, the compound is a compound of Formula (I-D3), (I-D4), (I-D5), (I-D6) or (I-D7)
or a pharmaceutically acceptable salt thereof, wherein R1 is as defined for Formula (II), Formula (I-G), Formula (I), or Formula (I-D), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-D), Z4 is hydrogen. In some embodiments, Z4 is Rz. In other embodiments, Z4 is C1-C6 alkyl. For example, in some embodiments, Z4 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl. In some embodiments, Z4 is is taken together with R2 and the intervening atoms to form a 4-6 membered heterocycloalkyl or heterocycloalkenyl ring. In some embodiments,
is selected from the group consisting of
In another aspect, the compound of Formula (II), Formula (I-G), or Formula (I) is a compound of Formula (IE)
or a pharmaceutically acceptable salt thereof, wherein R1, R2, R3, and Z5 are as defined for Formula (II), Formula (I-G), Formula (I) or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-E), Z5 is C1-C6 alkyl. For example, in some embodiments, Z5 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl. In some embodiments, Z5 is ethyl.
In another aspect, the compound of Formula (II), Formula (I-G), or Formula (I) is a compound of Formula (IF)
or a salt thereof, wherein R1, R2, R3, Rf, and R9 are as defined for Formula (II), Formula (I-G), or Formula (I), or any variation or embodiment thereof.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-F), Rf and Rg together with the nitrogen to which they are attached form a 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl.
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-F), Rf and Rg together with the nitrogen to which they are attached form a 3- to 6-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl. In some embodiments, Rf and Rg together with the nitrogen to which they are attached form a 3- to 6-membered heterocycloalkyl or heterocycloalkenyl selected from the group consisting of azetidinyl, pyrrolidinyl, and piperidinyl, each optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl. In some embodiments,
each optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl. In some embodiments, Rf and Rg together with the nitrogen to which they are attached form a 5- to 6-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with —C1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with —OH. In some embodiments, Rf and Rg together with the nitrogen to which they are attached form a pyrrolidinyl optionally substituted with —C1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with —OH. In some embodiments,
In some embodiments of Formula (II), Formula (I-G), Formula (I), or Formula (I-F), Rf and Rg together with the nitrogen to which they are attached form a 6- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl. In some embodiments, Rf and Rg together with the nitrogen to which they are attached form a bicyclic 6- to 10-membered heterocycloalkyl or heterocycloalkenyl. For instance, in some embodiments Rf and Rg together with the nitrogen to which they are attached form
each optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl. In some embodiments, Rf and Rg together with the nitrogen to which they are attached form a bridged 6- to 10-membered heterocycloalkyl or heterocycloalkenyl. For instance, in some embodiments,
is selected from the group consisting of
each optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl.
In some embodiments, Rf and Rg together with the nitrogen to which they are attached form a spirocyclic 6- to 10-membered heterocycloalkyl or heterocycloalkenyl. For instance, in some embodiments
is selected from the group consisting of
each optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl.
In some embodiments,
is selected from the group consisting of
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R4 is a 5- to 10 membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, R4 is selected from the group consisting of pyridyl, quinolinyl, isoquinolinyl, quinoxalinyl, cinnolinyl, quinazolinyl, naphthyridinyl, benzoxazolyl, benzothiazolyl, benzoimidazoyl, pyrrolyl, pyrazolyl, imidazolyl, triazolyl, tetrazolyl, furanyl, isoxazolyl, oxazolyl, oxadiazolyl, thiophenyl, isothiazolyl, thiazolyl, thiadiazolyl, pyridazinyl, pyrimidinyl, pyrazinyl, triazinyl, tetrazinyl, indolyl, isoindolyl, indazolyl, benzotriazolyl, benzofuranyl, benzoisoxazolyl, benzoxadiazolyl, benzothiophenyl, benzoisothiazolyl, benzothiadiazolyl, pyrrolopyridinyl, pyrazolopyridinyl, imidazopyridinyl, triazolopyridinyl, furopyridinyl, oxazolopyridinyl, isoxazolopyridinyl, oxadiazolopyridinyl, thienopyridinyl, thiazolopyridinyl, isothiazolopyridinyl, thiadiazolopyridinyl, thienopyridinyl, phthalazinyl, pyrazolothiazolyl, pyrazolothiazolyl and imidazothiazolyl, each optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, R4 is a 5- to 6 membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, R4 is pyrazolyl, pyridinyl, or oxadiazole, each optionally substituted with one or more independently selected C1-C6 alkyl substituents. In certain embodiments, R4 is selected from the group consisting of
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R4 is a 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of halo, oxo, —OH, —CN, —C1-C6 alkyl optionally substituted with one or more independently selected Ry substituents, —C1-C6 alkoxy optionally substituted with one or more independently selected halo substituents, —C(O)OC1-C6 alkyl, —C(O)C1-C6 alkyl, —S(O)2—C1-C6 alkyl, C6-C12 aryl optionally substituted with one or more independently selected halo substituents, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, R4 is a 4- to 6-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with —S(O)2—C1-C6 alkyl or —C1-C6 alkyl optionally substituted with —OH. In some embodiments, R4 is an azetidinyl or piperazinyl optionally substituted with —S(O)2—C1-C6 alkyl or —C1-C6 alkyl optionally substituted with —OH. In some embodiments, R4 is an azetidinyl optionally substituted with —S(O)2—C1-C6 alkyl. In some embodiments, R4 is azetidinyl substituted with —S(O)2CH3. In some embodiments, R4 is a piperazinyl optionally substituted with —C1-C6 alkyl optionally substituted with —OH. In certain embodiments, R4 is a piperazinyl optionally substituted with —CH2C(CH3)2OH.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R4 is selected from the group consisting of
In some embodiments, R4 is selected from the group consisting of
In some embodiments, R4 is
In some embodiments, R4 is
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R4 is Z6S(O)2N(Rs)—. In some embodiments, Z6 is 5- to 6-membered heterocycloalkyl or heterocycloalkenyl. In other embodiments, Z6 is 5- to 6-membered heteroaryl. In some embodiments, Z6 is C1-C6 alkyl. In some embodiments, Z6 is methyl. In some embodiments of the foregoing, Rs is hydrogen. In other embodiments, Rs is C1-C6 alkyl. In still other embodiments, Rs is methyl. In some embodiments, R4 is
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R4 is Z7N(Rt)S(O)2—. In some embodiments, Z7 is C6-C12 aryl. In some embodiments, Z7 is phenyl. In some embodiments, Rt is hydrogen. In other embodiments, Rt is C1-C6 alkyl. In still other embodiments, Rt is methyl. In some embodiments, R4 is —S(O)2—NH-phenyl.
In some embodiments of Formula (II), Formula (I-G), or Formula (I), R4 is Z8—O—(CH2)q—. In some embodiments, q is 0, such that R4 is Z8—O—. In other embodiments, q is 1, such that R4 is Z8—O—(CH2)—. In some embodiments of the foregoing, Z8 is 5- to 6-membered heteroaryl. In some embodiments, Z8 is pyridinyl. In other embodiments of the foregoing, Z8 is C3-C6 cycloalkyl. In some embodiments, Z8 is cyclopentyl. In some embodiments, R4 is
In some embodiments of Formula (II), p is 0. In some embodiments of Formula (II), p is 0, and the compound is of Formula (II-A)
or a pharmaceutically acceptable salt thereof, wherein:
R1 is halo or methoxy;
l) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more oxo substituents,
m) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly one annular heteroatom, which is an oxygen atom, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
n) 3- to 6-membered heterocycloalkyl or heterocycloalkenyl substituted with one or more independently selected —S(O)2—C1-C6alkyl substituents and optionally further substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
o) 5-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents,
p) 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a sulfur atom and the other of which is a nitrogen atom, wherein the 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents,
q) 5-membered heteroaryl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heteroaryl is substituted with exactly one methyl substituent,
r) 5-membered heteroaryl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 5-membered heteroaryl is substituted with one or more methyl substituents,
s) 6-membered heteroaryl comprising one or two annular heteroatoms and optionally substituted with one or more methyl substituents, wherein the 6-membered heteroaryl is other than
t) Z9—S(O)2—,
u) Z10—S(O)2—NH—,
w) Z12—CH2—O—,
y) Z14—C(H)(C1-C6 alkyl)-NH—C(O)—,
z)
or
aa)
wherein
Z9 is selected from the group consisting of cyclopropyl, C6-C12 aryl, 3- to 10-membered heterocycloalkyl or hetercycloalkenyl optionally substituted with one or more independently selected RA substituents, —NH(C1-C6 alkyl), —NH2 substituted with one or more independently selected RB substituents, and C1-C6 alkyl optionally substituted with one or more independently selected RC substituents, provided that Z9 is other than
unsubstituted methyl, or unsubstituted ethyl, wherein:
Z10 is C1-C6 alkyl substituted with one or more independently selected C6-C12 aryl substituents;
Z11 is selected from the group consisting of C3-C10 cycloalkyl and C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents, provided that, when Z11 is cyclopropyl, then R1 is other than methoxy;
Z12 is selected from the group consisting of C6-C12 aryl, 5- to 10-membered heteroaryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents or 5- to 10-membered heteroaryl substituents, and —C(O)-(3- to 10-membered heterocycloalkyl or heterocycloalkenyl);
Z13 is 5- to 10-membered heteroaryl substituted with one or more independently selected —C(O)—NH(C1-C6 alkyl) substituents; and
Z14 is 5- to 10-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents; and
R6 is hydrogen or halo.
In some embodiments of Formula (II) or Formula (II-A), R4 is selected from the group consisting of:
3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more oxo substituents,
3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly one annular heteroatom, which is an oxygen atom, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
3- to 6-membered heterocycloalkyl or heterocycloalkenyl substituted with one or more independently selected —S(O)2—C1-C6alkyl substituents and optionally further substituted with one or more independently selected oxo or —C1-C6 alkyl substituents,
5-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents, and
6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a sulfur atom and the other of which is a nitrogen atom, wherein the 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents.
In some embodiments of Formula (II) or Formula (II-A), R4 is 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more oxo substituents. In some embodiments, R4 is 5- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 5- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more oxo substituents.
In some embodiments of Formula (II) or Formula (II-A), R4 is 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly one annular heteroatom, which is an oxygen atom, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo or —C1-C6 alkyl substituents. In some embodiments, R4 is 5- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly one annular heteroatom, which is an oxygen atom, wherein the 5- to 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo or —C1-C6 alkyl substituents.
In some embodiments of Formula (II) or Formula (II-A), R4 is 3- to 6-membered heterocycloalkyl or heterocycloalkenyl substituted with one or more independently selected —S(O)2—C1-C6alkyl substituents and optionally further substituted with one or more independently selected oxo or —C1-C6 alkyl substituents. In some embodiments, R4 is 5- to 6-membered heterocycloalkyl or heterocycloalkenyl substituted with one or more independently selected —S(O)2—C1-C6alkyl substituents and optionally further substituted with one or more independently selected oxo or —C1-C6 alkyl substituents.
In some embodiments of Formula (II) or Formula (II-A), R4 is 5-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents.
In some embodiments of Formula (II) or Formula (II-A), R4 is 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a sulfur atom and the other of which is a nitrogen atom, wherein the 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents.
In some embodiments of Formula (II) or Formula (II-A), R4 is selected from the group consisting of
In some embodiments of Formula (II) or Formula (II-A), R4 is 3- to 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 3- to 6-membered heterocycloalkyl or heterocycloalkenyl is substituted with one or more independently selected —C1-C6 alkyl substituents and is optionally further substituted with one or more independently selected oxo substituents, or 6-membered heterocycloalkyl or heterocycloalkenyl comprising exactly two annular heteroatoms, one of which is a sulfur atom and the other of which is a nitrogen atom, wherein the 6-membered heterocycloalkyl or heterocycloalkenyl is optionally substituted with one or more independently selected oxo, —C1-C6 alkyl, or —S(O)2—(C1-C6 alkyl) substituents. In some embodiments, R4 is
In some embodiments of Formula (II) or Formula (II-A), R4 is selected from the group consisting of:
5-membered heteroaryl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heteroaryl is substituted with exactly one methyl substituent,
5-membered heteroaryl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 5-membered heteroaryl is substituted with one or more methyl substituents, and
6-membered heteroaryl comprising one or two annular heteroatoms and optionally substituted with one or more methyl substituents, wherein the 6-membered heteroaryl is other than
In some embodiments of Formula (II) or Formula (II-A), R4 is 5-membered heteroaryl comprising exactly two annular heteroatoms, one of which is a nitrogen atom and the other of which is an oxygen atom, wherein the 5-membered heteroaryl is substituted with exactly one methyl substituent. In other embodiments, R4 is 5-membered heteroaryl comprising exactly two annular heteroatoms, both of which are nitrogen atoms, wherein the 5-membered heteroaryl is substituted with one or more methyl substituents. In other embodiments, R4 is 6-membered heteroaryl comprising one or two annular heteroatoms and optionally substituted with one or more methyl substituents, wherein the 6-membered heteroaryl is other than
In some embodiments, R4 is selected from the group consisting of
In some embodiments of Formula (II) or Formula (II-A), R4 is Z9—S(O)2—, Z10—S(O)2—NH—, Z11—C(O)—NH—, Z12—CH2—O—, Z13—O—, Z14—C(H)(C1-C6 alkyl)-NH—C(O)—,
In some embodiments of Formula (II) or Formula (II-A), R4 is Z9—S(O)2—. In some embodiments, the compound of Formula (II) or Formula (II-A) is a compound of Formula (II-A1)
or a pharmaceutically acceptable salt thereof.
In some embodiments of Formula (II), Formula (II-A), or Formula (II-A1), Z9 is 3- to 10-membered heterocycloalkyl or hetercycloalkenyl optionally substituted with one or more independently selected RA substituents, provided that Z9 is other than
In some embodiments, Z9 is 5- to 6-membered heterocycloalkyl or hetercycloalkenyl optionally substituted with one or more independently selected RA substituents, provided that Z9 is other than
In some embodiments, RA is methyl or —CN. In some embodiments, Z9 is an unsubstituted 3- to 10-membered heterocycloalkyl or hetercycloalkenyl. In some embodiments, Z9 is an unsubstituted 5- to 6-membered heterocycloalkyl or hetercycloalkenyl.
In some embodiments, Z9 is C1-C6 alkyl optionally substituted with one or more independently selected RC substituents, provided that Z9 is other than unsubstituted methyl or unsubstituted ethyl. In some embodiments, Z9 is C1-C3 alkyl optionally substituted with one or more independently selected RC substituents, provided that Z9 is other than unsubstituted methyl or unsubstituted ethyl. In some embodiments, Z9 is unsubstituted C3-C6 alkyl. In some embodiments, Z9 is unsubstituted propyl. In some embodiments, Z9 is C1-C6 alkyl optionally substituted with one or more independently selected 3- to 8-membered heterocycloalkyl or heterocycloalkenyl. In some embodiments, Z9 is C1-C6 alkyl optionally substituted with one or more independently selected 5- to 6-membered heterocycloalkyl or heterocycloalkenyl.
In some embodiments, Z9 is —NH(C1-C6 alkyl). In some embodiments, Z9 is —NH(CH3). In some embodiments, Z9 is —NH2 substituted with one or more independently selected RB substituents. In some embodiments, Z9 is —NH2 substituted with one or more independently selected —C1-C6 alkyl-(5- to 10-membered heteroaryl). In some embodiments, Z9 is —NH2 substituted with one or more independently selected —C1-C6 alkyl-(5- to 6-membered heteroaryl). In some embodiments, Z9 is —NH2 substituted with one or more independently selected —C1-C6 alkyl-pyridinyl. In other embodiments, Z9 is 5- to 10-membered heteroaryl optionally substituted with one or more independently selected C6-C12 aryl. In other embodiments, Z9 is 5- to 6-membered heteroaryl optionally substituted with one or more phenyl.
In some embodiments, Z9 is cyclopropyl. In some embodiments, Z9 is C6-C12 aryl. In some embodiments, Z9 is phenyl.
In some embodiments, Z9 is selected from the group consisting of
In some embodiments of Formula (II) or Formula (II-A), R4 is Z10—S(O)2—NH—. In some embodiments, Z10 is C1-C6 alkyl substituted with one or more phenyl substituents. In some embodiments, Z10 is
In some embodiments of Formula (II) or Formula (II-A), R4 is Z11—C(O)—NH—. In some embodiments, Z11 is C3-C10 cycloalkyl, provided that, when Z11 is cyclopropyl, then R1 is other than methoxy. In some embodiments, Z11 is C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents. In some embodiments, Z11 is C1-C6 alkyl substituted with one or more independently selected 5- to 6-membered heterocycloalkyl or hetercycloalkenyl substituents. In some embodiments, Z11 is
In some embodiments of Formula (II) or Formula (II-A), R4 is Z12—CH2—O—. In some embodiments, Z12 is selected from the group consisting of C6-C12 aryl, 5- to 10-membered heteroaryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents or 5- to 10-membered heteroaryl substituents, and —C(O)-(3- to 10-membered heterocycloalkyl or heterocycloalkenyl). In some embodiments, Z12 is C6-C12 aryl. In some embodiments, Z12 is 5- to 10-membered heteroaryl. In some embodiments, Z12 is 5- to 6-membered heteroaryl. In some embodiments, Z12 is 3- to 10-membered heterocycloalkyl or heterocycloalkenyl. In other embodiments, Z12 is 5- to 6-membered heterocycloalkyl or heterocycloalkenyl. In some embodiments, Z12 is C1-C6 alkyl substituted with one or more independently selected 3- to 10-membered heterocycloalkyl or hetercycloalkenyl substituents or 5- to 10-membered heteroaryl substituents. In some embodiments, Z12 is C1-C6 alkyl substituted with one or more independently selected 5- to 6-membered heterocycloalkyl or hetercycloalkenyl substituents or 5- to 6-membered heteroaryl substituents. In some embodiments, Z12 is —C(O)-(3- to 10-membered heterocycloalkyl or heterocycloalkenyl). In other embodiments, Z12 is —C(O)-(5- to 6-membered heterocycloalkyl or heterocycloalkenyl). In some embodiments, Z12 is selected from the group consisting of
In some embodiments of Formula (II) or Formula (II-A), R4 is Z13—O—. In some embodiments, Z13 is 5- to 6-membered heteroaryl substituted with one or more independently selected —C(O)—NH(C1-C6 alkyl) substituents. In some embodiments, Z13 is pyridinyl substituted with one or more independently selected —C(O)—NH(C1-C6 alkyl) substituents. In some embodiments, Z13 is
In some embodiments of Formula (II) or Formula (II-A), R4 is Z14—C(H)(C1-C6 alkyl)-NH—C(O)—. In some embodiments, R4 is Z14—C(H)(CH3)—NH—C(O)—. In some embodiments, Z14 is 5- to 6-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments, Z14 is pyridinyl optionally substituted with one or more independently selected C1-C6 alkyl substituents. In some embodiments of Formula (II) or Formula (II-A), R4 is
In some embodiments of Formula (II) or Formula (II-A), R4 is
In other embodiments, R4 is
In some embodiments of Formula (II), or any variation thereof, including Formula (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), R1 is halo. For example, in some embodiments, R1 is fluoro. In some embodiments, R1 is chloro. In some embodiments, R1 is bromo. In other embodiments, R1 is iodo. In some embodiments, R1 is methoxy. In some embodiments of Formula (II), or any variation thereof, including Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), and (I-F), R2 is hydrogen. In some embodiments, R2 is C1-C6 alkyl. For example, in some embodiments, R2 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl. In some embodiments of Formula (II), or any variation thereof, including Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-B2), (I-B3), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), and (I-F), R3 is hydrogen. In some embodiments, R3 is C1-C6 alkyl. For example, in some embodiments, R3 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl.
In some embodiments of Formula (II), or any variation thereof, including Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), and (I-F), R2 and R3 are each hydrogen. In some embodiments, R2 is C1-C6 alkyl and R3 is hydrogen. For example, in some embodiments, R2 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl, and R3 is hydrogen. In certain embodiments, R2 is methyl and R3 is hydrogen. In some embodiments, R2 is hydrogen and R3 is C1-C6 alkyl. For example, in some embodiments, R2 is hydrogen, and R3 is methyl, ethyl, propyl, isopropyl, n-butyl, sec-butyl, or tert-butyl. In certain embodiments, R2 is hydrogen and R3 is methyl.
In some embodiments, provided herein are compounds and salts thereof described in Table 1.
In some variations, any of the compounds described herein, such as a compound of Formula (II), (I), (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-1B2), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), or any variation thereof, or a compound of Table 1 may be deuterated (e.g., a hydrogen atom is replaced by a deuterium atom). In some of these variations, the compound is deuterated at a single site. In other variations, the compound is deuterated at multiple sites. Deuterated compounds can be prepared from deuterated starting materials in a manner similar to the preparation of the corresponding non-deuterated compounds. Hydrogen atoms may also be replaced with deuterium atoms using other method known in the art.
Any formula given herein, such as Formula (II), (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1), is intended to represent compounds having structures depicted by the structural formula as well as certain variations or forms. In particular, compounds of any formula given herein may have asymmetric centers and therefore exist in different enantiomeric or diastereomeric forms. All optical isomers and stereoisomers of the compounds of the general formula, and mixtures thereof in any ratio, are considered within the scope of the formula. Thus, any formula given herein is intended to represent a racemate, one or more enantiomeric forms, one or more diastereomeric forms, one or more atropisomeric forms, and mixtures thereof in any ratio. Where a compound of Table 1 is depicted with a particular stereochemical configuration, also provided herein is any alternative stereochemical configuration of the compound, as well as a mixture of stereoisomers of the compound in any ratio. For example, where a compound of Table 1 has a stereocenter that is in an “S” stereochemical configuration, also provided herein is enantiomer of the compound wherein that stereocenter is in an “R” stereochemical configuration. Likewise, when a compound of Table 1 has a stereocenter that is in an “R” configuration, also provided herein is enantiomer of the compound in an “S” stereochemical configuration. Also provided are mixtures of the compound with both the “S” and the “R” stereochemical configuration. Additionally, if a compound of Table 1 has two or more stereocenters, also provided are any enantiomer or diastereomer of the compound. For example, if a compound of Table 1 contains a first stereocenter and a second stereocenter with “R” and “R” stereochemical configurations, respectively, also provided are stereoisomers of the compound having first and second stereocenters with “S” and “S” stereochemical configurations, respectively, “S” and “R” stereochemical configurations, respectively, and “R” and “S” stereochemical configurations, respectively. If a compound of Table 1 contains a first stereocenter and a second stereocenter with “S” and “S” stereochemical configurations, respectively, also provided are stereoisomers of the compound having first and second stereocenters with “R” and “R” stereochemical configurations, respectively, “S” and “R” stereochemical configurations, respectively, and “R” and “S” stereochemical configurations, respectively. If a compound of Table 1 contains a first stereocenter and a second stereocenter with “S” and “R” stereochemical configurations, respectively, also provided are stereoisomers of the compound having first and second stereocenters with “R” and “S” stereochemical configurations, respectively, “R” and “R” stereochemical configurations, respectively, and “S” and “S” stereochemical configurations, respectively. Similarly, if a compound of Table 1 contains a first stereocenter and a second stereocenter with “R” and “S” stereochemical configurations, respectively, also provided are stereoisomers of the compound having first and second stereocenters with “S” and “R” stereochemical configurations, respectively, “R” and “R” stereochemical configurations, respectively, and “S” and “S” stereochemical configurations, respectively. Furthermore, certain structures may exist as geometric isomers (i.e., cis and trans isomers), as tautomers, or as atropisomers. Additionally, any formula given herein is intended to refer also to any one of hydrates, solvates, and amorphous and polymorphic forms of such compounds, and mixtures thereof, even if such forms are not listed explicitly. In some embodiments, the solvent is water and the solvates are hydrates.
Representative examples of compounds detailed herein, including intermediates and final compounds, are depicted in the tables and elsewhere herein. It is understood that in one aspect, any of the compounds may be used in the methods detailed herein, including, where applicable, intermediate compounds that may be isolated and administered to an individual or subject.
The compounds depicted herein may be present as salts even if salts are not depicted, and it is understood that the compositions and methods provided herein embrace all salts and solvates of the compounds depicted here, as well as the non-salt and non-solvate form of the compound, as is well understood by the skilled artisan. In some embodiments, the salts of the compounds provided herein are pharmaceutically acceptable salts.
In one variation, the compounds herein are synthetic compounds prepared for administration to an individual or subject. In another variation, compositions are provided containing a compound in substantially pure form. In another variation, provided are pharmaceutical compositions comprising a compound detailed herein and a pharmaceutically acceptable carrier. In another variation, methods of administering a compound are provided. The purified forms, pharmaceutical compositions and methods of administering the compounds are suitable for any compound or form thereof detailed herein.
Any variation or embodiment of R1, R2, R3, R4, R5, R6, Z1, Z2, Z3, Z4, Z5, Z6, Z7, Z8, Z9, Z10, Z11, Z12, Z13, Z14, Ra, Rb, Rc, Rd, Re, Rf, Rg, Rh, Rj, Rk, Rm, Rn, Ro, Rp, Rq, Rr, Rs, Rt, Rx, Ry, Rz, RA, RB, RC, m, n, p, and q provided herein can be combined with every other variation or embodiment of R1, R2, R3, R4, R5, R6, Z1, Z2, Z3, Z4, Z5, Z6, Z7, Z8, Z9, Z10, Z11, Z1, Z1, Z14, Ra, Rc, Rd, Re, Rf, Rg, Rh, Rj, Rk, Rm, Rn, Ro, Rp, Rq, Rr, Rs, Rt, Rx, Ry, Rz, RA, RB, RC, m, n, p, and q, the same as if each combination had been individually and specifically described.
Other embodiments will be apparent to those skilled in the art from the following detailed description.
As used herein, when any variable occurs more than one time in a chemical formula, its definition on each occurrence is independent of its definition at every other occurrence.
Formula (II) includes all subformulae thereof. For example, Formula (II) includes compounds of Formula (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-B2), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D32), (I-D33), (I-D34), (I-D35), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1).
The names for compounds 1-552 provided herein, as shown in Table 1 and Examples 1-16, are provided by ChemInnovation's Chem 4d software version 7.5.0.0. The names for the intermediates 1.1-10.0 as shown in Examples A-MM are provided by ChemBioDraw Professional 15.0. One of skilled in the art would understand that the compounds may be named or identified using various commonly recognized nomenclature systems and symbols. By way of example, the compounds may be named or identified with common names, systematic or non-systematic names. The nomenclature systems and symbols that are commonly recognized in the art of chemistry include, for example, Chemical Abstract Service (CAS), ChemBioDraw Ultra, and International Union of Pure and Applied Chemistry (IUPAC).
Also provided are compositions, such as pharmaceutical compositions, that include a compound disclosed and/or described herein and one or more additional medicinal agents, pharmaceutical agents, adjuvants, carriers, excipients, and the like. Suitable medicinal and pharmaceutical agents include those described herein. In some embodiments, the pharmaceutical composition includes a pharmaceutically acceptable excipient or adjuvant and at least one chemical entity as described herein. Examples of pharmaceutically acceptable excipients include, but are not limited to, mannitol, lactose, starch, magnesium stearate, sodium saccharine, talcum, cellulose, sodium crosscarmellose, glucose, gelatin, sucrose, and magnesium carbonate. In some embodiments, provided are compositions, such as pharmaceutical compositions that contain one or more compounds described herein, or a pharmaceutically acceptable salt thereof.
In some embodiments, provided is a pharmaceutically acceptable composition comprising a compound of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D32), (I-D33), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof. In some aspects, a composition may contain a synthetic intermediate that may be used in the preparation of a compound described herein. The compositions described herein may contain any other suitable active or inactive agents.
Any of the compositions described herein may be sterile or contain components that are sterile. Sterilization can be achieved by methods known in the art. Any of the compositions described herein may contain one or more compounds or conjugates that are substantially pure.
Also provided are packaged pharmaceutical compositions, comprising a pharmaceutical composition as described herein and instructions for using the composition to treat a patient suffering from a disease or condition described herein.
Compounds and compositions detailed herein, such as a pharmaceutical composition comprising a compound of any formula provided herein, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable carrier or excipient, may be used in methods of administration and treatment as provided herein.
Without being bound by theory, the compounds and pharmaceutical compositions disclosed herein are believed to act by modulating nicotinamide phosphoribosyltransferase (NAMPT). In some embodiments, the compounds and pharmaceutical compositions disclosed herein are activators of NAMPT. In some embodiments, provided are methods of treating a disease or condition mediated by NAMPT activity in an individual or subject, comprising administering to the individual or subject in need thereof a compound of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof. In some embodiments, provided are methods of treating cancer, a hyperproliferative disease or condition, an inflammatory disease or condition, a metabolic disorder, a cardiac disease or condition, chemotherapy induced tissue damage, a renal disease, a metabolic disease, a neurological disease or injury, a neurodegenerative disorder or disease, diseases caused by impaired stem cell function, diseases caused by DNA damage, primary mitochondrial disorders, or a muscle disease or muscle wasting disorder in an individual or subject, comprising administering to the individual or subject in need thereof a compound of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof.
Also provided herein is the use of a compound of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-B2), (I-B3), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof in the manufacture of a medicament for treatment of a disease or condition mediated by NAMPT activity in a subject. In some aspects, provided is a compound or composition as described herein for use in a method of treatment of the human or animal body by therapy. In some embodiments, provided herein are compounds of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D32), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof, for use in a method of treatment of the human or animal body by therapy. In some embodiments, provided herein are compounds of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof, for use in treating a disease or condition mediated by NAMPT activity. In some embodiments, the disease or condition is selected from the group consisting of cancer, a hyperproliferative disease or condition, an inflammatory disease or condition, a metabolic disorder, a cardiac disease or condition, chemotherapy induced tissue damage, a renal disease, a metabolic disease, a neurological disease or injury, a neurodegenerative disorder or disease, diseases caused by impaired stem cell function, diseases caused by DNA damage, primary mitochondrial disorders, or a muscle disease or muscle wasting disorder.
Also provided herein are compositions (including pharmaceutical compositions) as described herein for the use in treating, preventing, and/or delaying the onset and/or development of a disease described herein and other methods described herein. In certain embodiments, the composition comprises a pharmaceutical formulation which is present in a unit dosage form.
In some embodiments, the subject is a mammal. In some embodiments, the subject is a mouse, rat, dog, cat, rabbit, pig, sheep, horse, cow, or human. In some embodiments, the subject is a human.
There are numerous conditions in which small molecule-mediated stimulation of NAMPT activity that boosts NAD+ levels would potentially be clinically beneficial (Stromland et al., Biochem Soc Trans. 2019, 47(1):119-130; Ralto et al., Nat Rev Nephrol. 2019; Fang et al., Trends Mol Med. 2017, 23(10):899-916; Yoshino et al., Cell Metab. 2011, 14(4):528-36; Yang and Sauve, Biochim Biophys Acta. 2016, 1864:1787-1800; Verdin, Science. 2015, 350(6265):1208-13). These conditions include, but are not limited to, cardiac diseases, chemotherapy induced tissue damage, renal diseases, metabolic diseases, muscular diseases, neurological diseases and injuries, diseases caused by impaired stem cell function, and DNA damage and primary mitochondrial disorders. In some embodiments, the disease or condition mediated by NAMPT activity is a cardiac disease, chemotherapy induced tissue damage, a renal disease, a metabolic disease, a muscular disease, a neurological disease or injury, a disease caused by impaired stem cell function, or DNA damage and primary mitochondrial disorder.
Cardiac diseases. In various preclinical models of heart failure NAD as well as NAMPT levels are decreased. In these models, cardiac function can be rescued, either by restoring NAD via oral supplementation or overexpression of NAMPT (Diguet et al, Circulation. 2018, 137:2256-2273; Zheng et al., Clin Sci (Lond). 2019, 133(13):1505-1521; Smyrnias et al., J Am Coll Cardiol. 2019, 73(14):1795-1806). Thus, increasing the catalytic efficiency of NAMPT with a small molecule activator to compensate for the decreased protein levels is a promising strategy to treat various forms of heart failure.
Chemotherapy induced tissue damage. Use of chemotherapy regimens frequently is limited by toxicity to healthy tissues and severe oxidative stress is thought to play a major role. NAD boosting has been shown to trigger a strong anti-oxidant response. Therefore, NAMPT activators are considered broadly useful in various settings of chemotherapy to prevent reversible and irreversible secondary pathologies. Examples are anthracycline and trastuzumab cardiotoxicity, cisplatin induced kidney injury, peripheral neuropathies induced by cisplatin, paclitaxel, vincristine and other agents. Neuroprotection by NAMPT activation is also useful in treating/preventing chemotherapy associated cognitive (“chemo brain”), which is caused by destruction of healthy nerve tissue, both during active treatment and long after treatment has been halted. For instance, see Zheng et al., Clin Sci (Lond). 2019, 133(13):1505-1521.
Renal diseases. Renal diseases are highly prevalent and an area of urgent unmet medical need. In approximately 3% of hospitalized patients, acute kidney injury (AKI) is diagnosed. A subset of patients will progress to chronic kidney disease that may require long-term dialysis or kidney transplantation. A key feature of kidney dysfunction is a decrease in the activities of SIRT1 and SIRT3, characterized by a reduction of the sirtuin substrate NAD, primarily due to impairment of de novo NAD+ synthesis. NAMPT is robustly expressed during kidney injury, thus small molecule activation with NAMPT is considered an effective measure to prevent AKI. Similarly, kidney mesangial cell hypertrophy exhibits depletion of NAD+, and restoration of intracellular NAD+ levels is considered efficacious. For instance, see Poyan Mehr et al., Nat Med. 2018, September; 24(9): 1351-9.
Metabolic disease. NAD+ boosting improves insulin sensitivity, dyslipidemia, mitochondrial function in metabolic disease and protects from/improves non-alcoholic and alcoholic steatohepatitis in preclinical models. More than 3 million people per year in the U.S. alone are diagnosed with non-alcoholic steatohepatitis and it is one of the leading causes of liver transplantation. See Guarino and Dufour, Metabolites. 2019, Sep. 10; 9(9), pii: E180; Yoshino et al., Cell Metab. 2011, 14(4):528-36.
Muscular diseases. Preclinical data has suggested that NAD+ boosting strategies could alleviate skeletal muscle dysfunction in a number of conditions, including Duchenne's muscular dystrophy, and age-related sarcopenia. See Zhang et al., Clin Sci (Lond). 2019, 133(13):1505-1521; Mohamed et al., Aging (Albany N.Y.). 2014, 6(10):820-34; Ryu et al., Sci Transl Med. 2016, 8(361):361ra139.
Neurological diseases and injuries. Repletion of NAD by means of NAMPT activation is neuroprotective and of therapeutic benefit in a wide range of preclinical models of neurological diseases and injuries, including age-related cognitive decline, glaucoma, ischemic stroke, and ALS. See Johnson et al., NPJ Aging Mech Dis. 2018, 4:10; Harlan et al., J Biol Chem. 2016, 291(20):10836-46; Zhao et al., Stroke. 2015, July; 46(7):1966-74; Williams et al., Front Neurosci. 2017, Apr. 25; 11:232.
Diseases caused by impaired stem cell function. NAD boosting promotes stem cell activation and hematopoiesis and is useful in accelerating the expansion of stem cell populations following a stem cell transplant. See Pi et al., Aging (Albany N.Y.). 2019, 11(11):3505-3522.
DNA damage disorders and primary mitochondrial disorders. NAMPT activators will also be useful in the treatment of DNA damage disorders which are associated with an accelerated aging phenotype, such as Xeroderma pigmentosum, Cockayne syndrome, and Ataxia telangiectasia. Similarly, there are several primary mitochondrial disorders with shared symptoms and manifestations for which NAD boosting via NAMPT activation may be a suitable therapeutic intervention. See Fang et al, Cell. 2014, 157(4):882-896; Khan et al, EMBO Mol Med. 2014, June; 6(6):721-31; Cerutti et al., Cell Metab. 2014, 19(6):1042-9.
Provided in some embodiments are methods of treating a disease or condition mediated by NAMPT activity in a subject in need thereof, comprising administering to the individual or subject in need thereof a compound of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof, wherein the disease or condition is selected from the group consisting of cardiac diseases, chemotherapy induced tissue damage, renal diseases, metabolic diseases, muscular diseases, neurological diseases and injuries, diseases caused by impaired stem cell function, and DNA damage and primary mitochondrial disorders.
Additional applications of small molecule NAMPT activators are provided in Table 2.
In some embodiments, the disease or condition mediated by NAMPT activity is cancer and chemotherapy-induced tissue damage, a cardiovascular disease, a renal disease, chronic inflammatory and fibrotic disease, a vascular disease, metabolic dysfunction, a muscular disease, a neurological disease or injury, or a DNA damage disorder or primary mitochondrial disorder. Provided in some embodiments are methods of treating a disease or condition mediated by NAMPT activity in a subject in need thereof, comprising administering to the individual or subject in need thereof a compound of Formula (II), (I-G), (I), (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), or (II-A), or a compound of Table 1, or a pharmaceutically acceptable salt thereof. In some embodiments, the disease or condition is cancer or chemotherapy induced tissue damage, a cardiovascular disease, a renal disease, a chronic inflammatory or fibrotic disease, a vascular disease, metabolic dysfunction, a muscular disease, a neurological disease or injury, a DNA damage disorder or Primary Mitochondrial Disorder, including any of the diseases listed in Table 2.
Membrane permeability is a key property in small molecule drug design, especially for compounds that have intracellular targets, as their efficacy highly depends on their ability to cross the membrane. The efficacy of a drug can depend on the ability of the drug to reach the intended site of action. Drug absorption is the movement of a drug into the bloodstream. Many factors influence this process, including a drug's physicochemical properties, formulation, and route of administration. Generally, for oral treatment, the drug needs to be introduced via the intestinal pathway to blood. For other routes, like intravenous therapy, intramuscular injection, and enteral nutrition, absorption is more straightforward to blood. No matter what kind of administration routes, drugs must be dissolved and absorbed for therapeutic effects. By adjusting factors that affect absorption, the pharmacokinetic (PK) profile of a drug can be changed. A drug's permeability across biological membranes is a key factor that influences the absorption and distribution. This is because if a drug wants to reach to the systemic circulation, it needs to cross several semipermeable cell membranes firstly. Drugs may cross cell membranes by passive diffusion, facilitated passive diffusion, active transport, and pinocytosis. The drug's physicochemical properties (such as size and lipophilicity), as well as membrane-based efflux mechanisms, can lead to poor permeability.
For orally administered drugs, most absorption occurs in the small intestine. Therefore, drugs that are poorly absorbed by and/or actively effluxed out of the small intestine would have a low likelihood of actually reaching the intended site of action. This low likelihood of reaching the intended site of action would thereby greatly diminish the efficacy of the drug, requiring significantly higher and potentially unrealistic dosages compared to dosages that would be anticipated by in vitro on-target potency assays. Conversely, drugs that are readily absorbed and/or have a reduced amount of active efflux from the small intestine would likely require lower dosages to be administered than similar or even more “potent” drugs that are poorly absorbed. Accordingly, the ability of a drug to be absorbed by and the amount of efflux that occurs within the small intestine is an important consideration for the development of any orally administered drug.
There are a wide variety of in vitro methods to assess the permeability of drugs and predict their in vivo absorption. One such method is the Caco-2 permeability assay. The Caco-2 cell line is derived from a human colon carcinoma and has many characteristics that resemble intestinal epithelial cells. Caco-2 permeability assay is a good way to investigate human intestinal permeability and drug efflux. Monolayers of the Caco-2 cell line have been recognized as an accurate in vitro model of human small intestinal drug absorption. Even though the cell line was isolated from a human colon adenocarcinoma, differentiated Caco-2 cells resemble enterocytes (small intestinal absorptive cells) in that Caco-2 cells form functional tight junctions, apical and basolateral domains, and brush border cytoskeleton. Caco-2 permeability assay measures the rate of transporting of a compound across the Caco-2 cell and assesses transport in both directions. The in vitro apparent permeability (Paap) of a drug for Caco-2 cells in the apical to basolateral direction has been shown to correlate with in vivo oral absorption in humans, both in that drugs with poor Caco-2 cell permeability have poor small intestinal drug absorption in vivo and in that drugs with high or complete Caco-2 cell permeability have high small intestinal drug absorption in vivo (Artursson, et al., Biochem Biophys Res Comm, 1991, 3(29): 880-885). Typically, drugs that are completely absorbed in vivo have a permeability coefficient greater than 1×10−6 cm/second, and drugs that are poorly absorbed have a permeability coefficient less than 1×10-7 cm/second in the apical to basolateral direction in Caco-2 cells.
Additionally, Caco-2 cells have been used to identify and quantify levels of active efflux for a drug. Active efflux of a drug can be determined by calculating the ratio of Paap in the basolateral to apical direction and the Paap in the apical to basolateral direction. Typically, the lower the ratio, the greater the ability of the drug to reach the intended site of action, and the greater the ability of the drug to reach the intended site of action, the greater potential efficacy of the drug.
Compounds provided herein are suitable for oral administration as measured by their permeability characteristics as evaluated by the Caco-2 cellular model. Compounds described herein have been demonstrated to have improved permeability, as described in Biological Example 2 herein.
The compounds and compositions disclosed and/or described herein are administered at a therapeutically effective dosage, e.g., a dosage sufficient to provide treatment for the disease state. While human dosage levels have yet to be optimized for the chemical entities described herein, generally, a daily dose ranges from about 0.01 to 100 mg/kg of body weight; in some embodiments, from about 0.05 to 10.0 mg/kg of body weight, and in some embodiments, from about 0.10 to 1.4 mg/kg of body weight. Thus, for administration to a 70 kg person, in some embodiments, the dosage range would be about from 0.7 to 7000 mg per day; in some embodiments, about from 3.5 to 700.0 mg per day, and in some embodiments, about from 7 to 100.0 mg per day. The amount of the chemical entity administered will be dependent, for example, on the subject and disease state being treated, the severity of the affliction, the manner and schedule of administration and the judgment of the prescribing physician. For example, an exemplary dosage range for oral administration is from about 5 mg to about 500 mg per day, and an exemplary intravenous administration dosage is from about 5 mg to about 500 mg per day, each depending upon the compound pharmacokinetics.
A daily dose is the total amount administered in a day. A daily dose may be, but is not limited to be, administered each day, every other day, each week, every 2 weeks, every month, or at a varied interval. In some embodiments, the daily dose is administered for a period ranging from a single day to the life of the subject. In some embodiments, the daily dose is administered once a day. In some embodiments, the daily dose is administered in multiple divided doses, such as in 2, 3, or 4 divided doses. In some embodiments, the daily dose is administered in 2 divided doses.
Administration of the compounds and compositions disclosed and/or described herein can be via any accepted mode of administration for therapeutic agents including, but not limited to, oral, sublingual, subcutaneous, parenteral, intravenous, intranasal, topical, transdermal, intraperitoneal, intramuscular, intrapulmonary, vaginal, rectal, or intraocular administration. In some embodiments, the compound or composition is administered orally or intravenously. In some embodiments, the compound or composition disclosed and/or described herein is administered orally.
Pharmaceutically acceptable compositions include solid, semi-solid, liquid and aerosol dosage forms, such as tablet, capsule, powder, liquid, suspension, suppository, and aerosol forms. The compounds disclosed and/or described herein can also be administered in sustained or controlled release dosage forms (e.g., controlled/sustained release pill, depot injection, osmotic pump, or transdermal (including electrotransport) patch forms) for prolonged timed, and/or pulsed administration at a predetermined rate. In some embodiments, the compositions are provided in unit dosage forms suitable for single administration of a precise dose.
The compounds disclosed and/or described herein can be administered either alone or in combination with one or more conventional pharmaceutical carriers or excipients (e.g., mannitol, lactose, starch, magnesium stearate, sodium saccharine, talcum, cellulose, sodium crosscarmellose, glucose, gelatin, sucrose, magnesium carbonate). If desired, the pharmaceutical composition can also contain minor amounts of nontoxic auxiliary substances such as wetting agents, emulsifying agents, solubilizing agents, pH buffering agents and the like (e.g., sodium acetate, sodium citrate, cyclodextrine derivatives, sorbitan monolaurate, triethanolamine acetate, triethanolamine oleate). Generally, depending on the intended mode of administration, the pharmaceutical composition will contain about 0.005% to 95%, or about 0.5% to 50%, by weight of a compound disclosed and/or described herein. Actual methods of preparing such dosage forms are known, or will be apparent, to those skilled in this art; for example, see Remington's Pharmaceutical Sciences, Mack Publishing Company, Easton, Pa.
In some embodiments, the compositions will take the form of a pill or tablet and thus the composition may contain, along with a compounds disclosed and/or described herein, one or more of a diluent (e.g., lactose, sucrose, dicalcium phosphate), a lubricant (e.g., magnesium stearate), and/or a binder (e.g., starch, gum acacia, polyvinylpyrrolidine, gelatin, cellulose, cellulose derivatives). Other solid dosage forms include a powder, marume, solution or suspension (e.g., in propylene carbonate, vegetable oils or triglycerides) encapsulated in a gelatin capsule.
Liquid pharmaceutically administrable compositions can, for example, be prepared by dissolving, dispersing or suspending etc. a compound disclosed and/or described herein and optional pharmaceutical additives in a carrier (e.g., water, saline, aqueous dextrose, glycerol, glycols, ethanol or the like) to form a solution or suspension. Injectables can be prepared in conventional forms, either as liquid solutions or suspensions, as emulsions, or in solid forms suitable for dissolution or suspension in liquid prior to injection. The percentage of the compound contained in such parenteral compositions depends, for example, on the physical nature of the compound, the activity of the compound and the needs of the subject. However, percentages of active ingredient of 0.01% to 10% in solution are employable, and may be higher if the composition is a solid which will be subsequently diluted to another concentration. In some embodiments, the composition will comprise from about 0.2 to 2% of a compound disclosed and/or described herein in solution.
Pharmaceutical compositions of the compounds disclosed and/or described herein may also be administered to the respiratory tract as an aerosol or solution for a nebulizer, or as a microfine powder for insufflation, alone or in combination with an inert carrier such as lactose. In such a case, the particles of the pharmaceutical composition may have diameters of less than 50 microns, or in some embodiments, less than 10 microns.
In addition, pharmaceutical compositions can include a compound disclosed and/or described herein and one or more additional medicinal agents, pharmaceutical agents, adjuvants, and the like. Suitable medicinal and pharmaceutical agents include those described herein.
Also provided are articles of manufacture and kits containing any of the compounds or pharmaceutical compositions provided herein. The article of manufacture may comprise a container with a label. Suitable containers include, for example, bottles, vials, and test tubes. The containers may be formed from a variety of materials such as glass or plastic. The container may hold a pharmaceutical composition provided herein. The label on the container may indicate that the pharmaceutical composition is used for preventing, treating or suppressing a condition described herein, and may also indicate directions for either in vivo or in vitro use.
In one aspect, provided herein are kits containing a compound or composition described herein and instructions for use. The kits may contain instructions for use in the treatment of a heart disease in an individual or subject in need thereof. A kit may additionally contain any materials or equipment that may be used in the administration of the compound or composition, such as vials, syringes, or IV bags. A kit may also contain sterile packaging.
The compounds and compositions described and/or disclosed herein may be administered alone or in combination with other therapies and/or therapeutic agents useful in the treatment of the aforementioned disorders, diseases, or conditions.
The following enumerated embodiments are representative of some aspects of the invention.
1. A compound of Formula (I)
or a pharmaceutically acceptable salt thereof,
wherein:
wherein (1) when R4 is Z1NRaC(O)—, Z1 is other than methyl, unsubstituted cyclopropyl, —C(CH3)2CH2OH, and —CH2-thiofuran;
(2) R4 is other than 4-methylpiperazinyl, 4-phenylpiperazinyl, 4-pyridylpiperazinyl, 4-(furanylmethyl)piperazinyl,
and
(3) the compound of Formula (I) is not a compound of Table 1X.
2. The compound of embodiment 1, or a pharmaceutically acceptable salt thereof, wherein R1 is halo.
3. The compound of embodiment 1 or embodiment 2, or a pharmaceutically acceptable salt thereof, wherein R1 is Cl.
4. The compound of embodiment 1, or a pharmaceutically acceptable salt thereof, wherein R1 is methoxy.
5. The compound of any one of embodiments 1-4, or a pharmaceutically acceptable salt thereof, R2 is hydrogen.
6. The compound of any one of embodiments 1-4, or a pharmaceutically acceptable salt thereof, R2 is C1-C6 alkyl.
7. The compound of any one of embodiments 1-6, or a pharmaceutically acceptable salt thereof, R3 is hydrogen.
8. The compound of any one of embodiments 1-6, or a pharmaceutically acceptable salt thereof, R3 is C1-C6 alkyl.
9. The compound of any one of embodiments 1-6, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula (I) is a compound of Formula (I-A)
10. The compound of any one of embodiments 1-9, or a pharmaceutically acceptable salt thereof, wherein Ra is hydrogen.
11. The compound of any one of embodiments 1-9, or a pharmaceutically acceptable salt thereof, wherein Ra is C1-C6 alkyl.
12. The compound of any one of embodiments 1-11, or a pharmaceutically acceptable salt thereof, wherein Z1 is selected from the group consisting of.
C1-C6 alkyl optionally substituted with one or more substituents independently selected from the group consisting of —OH, C3-C6 cycloalkyl, C6-C12 aryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 10-membered heteroaryl, wherein the C6-C12 aryl, 3- to 10-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 10-membered heteroaryl are each independently optionally substituted with one or more substituents independently selected from the group consisting of C1-C6 alkyl and C1-C6 alkoxy;
C3-C6 cycloalkyl optionally substituted with one or more substituents independently selected from the group consisting of C6-C12 aryl, C1-C6 alkyl, and C1-C6 alkoxy optionally substituted with 5- or 10-membered heteroaryl, wherein the 5- or 10-membered heteroaryl is optionally further substituted with C1-C6 alkyl; and
3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of —C1-C6 alkyl and —C(O)OC1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with C6-C12 aryl.
13. The compound of any one of embodiments 1-11, or a pharmaceutically acceptable salt thereof, wherein Z1 is selected from the group consisting of ethyl,
14. The compound of embodiment 1, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula (I) is a compound of Formula (I-B)
15. The compound of any one of embodiments 1-8 and 14, or a pharmaceutically acceptable salt thereof, wherein Rb is hydrogen.
16. The compound of any one of embodiments 1-8 and 14, or a pharmaceutically acceptable salt thereof, wherein Rb is C1-C6 alkyl.
17. The compound of any one of embodiments 1-8 and 14, or a pharmaceutically acceptable salt thereof, wherein Rb is taken together with R5 and the intervening atoms to form a 5- to 6-membered heterocycloalkyl or heterocycloalkenyl ring.
18. The compound of any one of embodiments 1-8 and 14-17, or a pharmaceutically acceptable salt thereof, wherein Z2 is hydrogen.
19. The compound of any one of embodiments 1-8 and 14-17, or a pharmaceutically acceptable salt thereof, wherein Z2 is selected from the group consisting of
23. The compound of embodiment 22, or a pharmaceutically acceptable salt thereof, wherein Z2 is
24. The compound of embodiment 1, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula (I) is a compound of Formula (I-C)
25. The compound of any one of embodiments 1-8 and 24, or a pharmaceutically acceptable salt thereof, wherein m is 1.
26. The compound of any one of embodiments 1-8 and 24, or a pharmaceutically acceptable salt thereof, wherein m is 0.
27. The compound of any one of embodiments 1-8, and 24-25, or a pharmaceutically acceptable salt thereof, wherein Rc is hydrogen.
28. The compound of any one of embodiments 1-8 and 24-25, or a pharmaceutically acceptable salt thereof, wherein Rc is C1-C6 alkyl.
29. The compound of any one of embodiments 1-8, 24-25, and 27-28, or a pharmaceutically acceptable salt thereof, wherein Rd is hydrogen.
30. The compound of any one of embodiments 1-8, 24-25, and 27-28, or a pharmaceutically acceptable salt thereof, wherein Rd is C1-C6 alkyl.
31. The compound of any one of embodiments 1-8 and 24-25, or a pharmaceutically acceptable salt thereof, wherein Rc and Rd together with the carbon to which they are attached form a C3-C6 cycloalkyl.
32. The compound of any one of embodiments 1-8 and 24-31, or a pharmaceutically acceptable salt thereof, wherein Reis hydrogen.
33. The compound of any one of embodiments 1-8 and 24-31, or a pharmaceutically acceptable salt thereof, wherein Re is C1-C6 alkyl.
34. The compound of any one of embodiments 1-8 and 24-33, or a pharmaceutically acceptable salt thereof, wherein Z3 is hydrogen.
35. The compound of any one of embodiments 1-8 and 24-33, or a pharmaceutically acceptable salt thereof, wherein Z3 is selected from the group consisting of
37. The compound of embodiment 1, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula (I) is a compound of Formula (I-D)
38. The compound of any one of embodiments 1-8 and 37, or a pharmaceutically acceptable salt thereof, wherein n is 0.
39. The compound of any one of embodiments 1-8 and 37, or a pharmaceutically acceptable salt thereof, wherein n is 1.
40. The compound of any one of embodiments 1-8 and 37, or a pharmaceutically acceptable salt thereof, wherein n is 2.
41. The compound of any one of embodiments 1-8 and 37-40, or a pharmaceutically acceptable salt thereof, wherein Z4 is hydrogen or Rz.
42. The compound of any one of embodiments 1-8 and 37-40 or a pharmaceutically acceptable salt thereof, wherein Z4 is C1-C6 alkyl.
43. The compound of any one of embodiments 1-8 and 37-40, or a pharmaceutically acceptable salt thereof, wherein Z4 is taken together with R2 and the intervening atoms to form a 4-6 membered heterocycloalkyl or heterocycloalkenyl ring.
44. The compound of embodiment 43, wherein
is selected from the group consisting of
45. The compound of embodiment 1, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula (I) is a compound of Formula (I-E)
46. The compound of any one of embodiments 1-8 and 45, or a pharmaceutically acceptable salt thereof, wherein Z5 is C1-C6 alkyl.
47. The compound of any one of embodiments 1-8 and 45, or a pharmaceutically acceptable salt thereof, wherein Z5 is ethyl.
48. The compound of claim 1, or a pharmaceutically acceptable salt thereof, wherein the compound of Formula (I) is a compound of Formula (I-F)
49. The compound of any one of claims 1-8 and 48, or a pharmaceutically acceptable salt thereof, wherein Rf and Rg together with the nitrogen to which they are attached form a 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of halo, —OH, —CN, oxo, —C1-C6 alkyl optionally substituted with one or more independently selected Rx substituents, —C3-C6 cycloalkyl, —C1-C6 alkoxy, —C(O)Rh, —NHC(O)OC1-C6 alkyl, —NRjRk, —C(O)NRmRn, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl.
50. The compound of claim 49, or a pharmaceutically acceptable salt thereof, wherein Rf and Rg together with the nitrogen to which they are attached form a 5- to 6-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with —C1-C6 alkyl, wherein the —C1-C6 alkyl is optionally substituted with —OH.
51. The compound of any one of embodiments 1-8 and 48-49, or a pharmaceutically acceptable salt thereof, wherein
is selected from the group consisting of
52. The compound of embodiment 51, or a pharmaceutically acceptable salt thereof, wherein
53. The compound of any one of embodiments 1-8, or a pharmaceutically acceptable salt thereof, wherein R4 is a 5- to 10 membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents.
54. The compound of any one of embodiments 1-8 and 53, or a pharmaceutically acceptable salt thereof, wherein R4 is selected from the group consisting of
55. The compound of any one of embodiments 1-8, or a pharmaceutically acceptable salt thereof, wherein R4 is a 3- to 10-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with one or more substituents independently selected from the group consisting of halo, oxo, —OH, —CN, —C1-C6 alkyl optionally substituted with one or more independently selected Ry substituents, —C1-C6 alkoxy optionally substituted with one or more independently selected halo substituents, —C(O)OC1-C6 alkyl, —C(O)C1-C6 alkyl, —S(O)2—C1-C6 alkyl, C6-C12 aryl optionally substituted with one or more independently selected halo substituents, 3- to 6-membered heterocycloalkyl or heterocycloalkenyl, and 5- to 6-membered heteroaryl optionally substituted with one or more independently selected C1-C6 alkyl substituents.
56. The compound of embodiment 55, or a pharmaceutically acceptable salt thereof, wherein R4 is a 4- to 6-membered heterocycloalkyl or heterocycloalkenyl optionally substituted with —S(O)2—C1-C6 alkyl or —C1-C6 alkyl optionally substituted with —OH.
57. The compound of any one of embodiments 1-8 and 55, or a pharmaceutically acceptable salt thereof, wherein R4 is selected from the group consisting of
58. The compound of embodiment 57, or a pharmaceutically acceptable salt thereof, wherein R4 is
59. A compound selected from the group consisting of compounds of Table 1, or a pharmaceutically acceptable salt thereof.
60. A pharmaceutical composition comprising a compound according to any one of embodiments 1-59, or a pharmaceutically acceptable salt thereof, and a pharmaceutically acceptable excipient.
61. A method of treating a disease or condition mediated by NAMPT activity in a subject in need thereof, comprising administering to the subject a compound of any one of embodiments 1-59, or a pharmaceutically acceptable salt thereof, or a pharmaceutical composition of embodiment 60.
62. The method of embodiment 61, wherein the disease or condition is selected from the group consisting of cancer, a hyperproliferative disease or condition, an inflammatory disease or condition, a metabolic disorder, a cardiac disease or condition, chemotherapy induced tissue damage, a renal disease, a metabolic disease, a neurological disease or injury, a neurodegenerative disorder or disease, diseases caused by impaired stem cell function, diseases caused by DNA damage, primary mitochondrial disorders, or a muscle disease or muscle wasting disorder.
63. The method of embodiment 61, wherein the disease or condition is selected from the group consisting of obesity, atherosclerosis, insulin resistance, type 2 diabetes, cardiovascular disease, Alzheimer's disease, Huntington's disease, Parkinson's disease, amyotrophic lateral sclerosis, depression, Down syndrome, neonatal nerve injury, aging, axonal degeneration, carpal tunnel syndrome, Guillain-Barre syndrome, nerve damage, polio (poliomyelitis), and spinal cord injury.
Compounds of Formula (II), (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D32), (I-D33), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1) will now be described by reference to illustrative synthetic schemes for their general preparation below and the specific examples that follow. Artisans will recognize that, to obtain the various compounds herein, starting materials may be suitably selected so that the ultimately desired substituents will be carried through the reaction scheme with or without protection as appropriate to yield the desired product. Alternatively, it may be necessary or desirable to employ, in the place of the ultimately desired substituent, a suitable group that may be carried through the reaction scheme and replaced as appropriate with the desired substituent. In addition, one of skill in the art will recognize that protecting groups may be used to protect certain functional groups (amino, carboxy, or side chain groups) from reaction conditions, and that such groups are removed under standard conditions when appropriate. Unless otherwise specified, the variables are as defined above in reference to Formula (II), (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B31), (I-B32), (I-B33), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D2), (I-D3), (I-D4), (I-D5), (I-D6), (I-D7), (I-E), (I-F), (II-A), and (II-A1).
Where it is desired to obtain a particular enantiomer of a compound, this may be accomplished from a corresponding mixture of enantiomers using any suitable conventional procedure for separating or resolving enantiomers. Thus, for example, diastereomeric derivatives may be produced by reaction of a mixture of enantiomers, e.g. a racemate, and an appropriate chiral compound. The diastereomers may then be separated by any convenient means, for example by crystallization and the desired enantiomer recovered. In another resolution process, a racemate may be separated using chiral High Performance Liquid Chromatography. Alternatively, if desired a particular enantiomer may be obtained by using an appropriate chiral intermediate in one of the processes described.
Chromatography, recrystallization and other conventional separation procedures may also be used with intermediates or final products where it is desired to obtain a particular isomer of a compound or to otherwise purify a product of a reaction.
General methods of preparing compounds described herein are depicted in exemplified methods below. Variable groups in the schemes provided herein are defined as for Formula (II), (I-G), (I) (I-A), (I-A1), (I-A2), (I-A3), (I-A4), (I-B), (I-B1), (I-B2), (I-B3), (I-C), (I-C1), (I-C2), (I-C3), (I-C4), (I-D), (I-D1), (I-D32), (I-D33), (I-D34), (I-D35), (I-D36), (I-D7), (I-E), (I-F), (II-A), and (II-A1), or any variation thereof. Other compounds described herein may be prepared by similar methods.
In some embodiments, compounds provided herein may be synthesized according to Scheme A1, A2, or A3.
wherein R1, R2, R3, R4, and R5 are as defined for formula (II) or any variation thereof detailed herein.
In certain embodiments compounds provided herein may be synthesized according to Scheme A1a, A2a, or A3a:
wherein R1, R2, R3, R4, and R5 are as defined for formula (II) or any variation thereof detailed herein.
In some embodiments, compounds provided herein may be synthesized according to Scheme B1 or B2:
wherein R1, R2, R3, R5, Ra, Rg, Rf, and Z1 are as defined for formula (II) or any variation thereof detailed herein.
In certain embodiments compounds provided herein may be synthesized according to Scheme B1a or B2a:
wherein R1, R2, R3, R5, Ra, Rg, Rf, and Z1 are as defined for formula (II) or any variation thereof detailed herein.
In some embodiments, compounds provided herein may be synthesized according to Scheme C1 or C2:
wherein R1, R2, R3, R5, Rb, Rc, Re, Z2 and Z3 are as defined for formula (II) or any variation thereof detailed herein, and PG is a suitable protecting group.
In certain embodiments, compounds provided herein may be synthesized according to Scheme C1a or C2a:
wherein R1, R2, R3, R5, Rb, Rc, Re, Z2 and Z3 are as defined for formula (II) or any variation thereof detailed herein.
In some embodiments, compounds provided herein may be synthesized according to Scheme D1:
wherein R1, R5, Rc, Rd, m, and Z3 are as defined for formula (II) or any variation thereof detailed herein, and PG is a suitable protecting group.
In certain embodiments, compounds provided herein may be synthesized according to Scheme D1a:
wherein R1, R5, Rc, Rd, m, and Z3 are as defined for formula (II) or any variation thereof detailed herein.
In some embodiments, compounds provided herein may be synthesized according to Scheme E1:
wherein R1, R2, R3, R5, n, and Z4 are as defined for formula (II) or any variation thereof detailed herein.
In certain embodiments, compounds provided herein may be synthesized according to Scheme E1a:
wherein R1, R2, R3, R5, n, and Z4 are as defined for formula (II) or any variation thereof detailed herein.
In some embodiments, compounds provided herein may be synthesized according to Schemes F1:
wherein R1, R2, R3, R5, n, and Z4 are as defined for formula (II) or any variation thereof detailed herein.
In certain embodiments, compounds provided herein may be synthesized according to Schemes F1a:
wherein R1, R2, R3, R5, n, and Z4 are as defined for formula (II) or any variation thereof detailed herein.
Particular non-limiting examples are provided in the Example section below.
The following examples are offered to illustrate but not to limit the compositions, uses, and methods provided herein. The compounds are prepared using the general methods described above.
The following abbreviations are used throughout the Examples: TEA (triethylamine), DCM (dichloromethane), (Boc)2O (di-tert-butyl decarbonate), EA (Ethyl acetate), PE (Petroleum ether, DMF (N,N-dimethylformamide), DIEA (N-ethyl-N-isopropylpropan-2-amine), HATU (1-[Bis(dimethylamino)methylene]-1H-1,2,3-triazolo[4,5-b]pyridinium 3-oxid hexafluorophosphate), HOAt (1-Hydroxy-7-azabenzotriazole), HOBt (Hydroxybenzotriazole), EDCI (1-Ethyl-3-(3-dimethylaminopropyl)carbodiimide), MeOH (methanol), EtOH (ethanol), iPrOH (propan-2-ol), ACN (acetonitrile), TFA (trifluoroacetic acid), DPPA (Diphenylphosphoryl azide), DBU (1,8-Diazabicyclo(5.4.0)undec-7-ene), THE (tetrahydrofuran), PPh3 (triphenylphosphane), SM (starting material), Hex (hexane), NCS (N-chlorosuccinimide), r.t. (room temperature), DCE (dichloroethane), FA (formic acid), CHCl3 (Chloroform), BnBr (benzyl bromide), HCl (hydrogen chloride), equiv (equivalent), and DSC (bis(2,5-dioxopyrrolidin-1-yl) carbonate), HBTU (0-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate).
To a solution of ethyl 2-(4-aminophenyl)acetate (27.46 g, 153.2 mmol) in DCM (20 mL) at 20° C. was added 4-methoxy benzyl isocyanate (25.0 g, 153.2 mmol) dropwise. The resulting mixture was stirred at room temperature for 4 hours then methanol (10 mL) was added and cooled to 0° C. After 1 hour at 0° C. the slurry was filtered providing Intermediate 1-a (26.7 g, 78.0 mmol, 50.9% yield) as an off-white solid. LCMS-APCI (POS.) m/z: 343.1 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.50 (s, 1H), 7.38-7.30 (m, 2H), 7.27-7.19 (m, 2H), 7.15-7.07 (m, 2H), 6.94-6.85 (m, 2H), 6.52 (t, J=5.9 Hz, 1H), 4.22 (d, J=5.4 Hz, 2H), 4.06 (q, J=7.1 Hz, 2H), 3.73 (s, 3H), 3.55 (s, 2H), 1.17 (t, J=7.1 Hz, 3H).
To a solution of Intermediate 1-a (26.5 g, 77.5 mmol) in 1,4 dioxane (400 mL) at 20° C. was added 4 N LiOH (234.0 mmol) dropwise. The resulting mixture was stirred at room temperature for 2 hours then methanol (50 mL) was added. The pH of mixture was adjusted to pH 1-2 using aqueous 6N HCl at 0° C. After 1 hour at 0° C., the slurry was filtered providing 2-(4-(3-(4-methoxybenzyl)ureido)phenyl)acetic acid (20.2 g, 64.3 mmol, 82.9% yield) as an off-white solid. LCMS-APCI (POS.) m/z: 315.0 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 12.22 (s, 1H), 8.47 (s, 1H), 7.33 (d, J=8.0 Hz, 2H), 7.23 (d, J=8.1 Hz, 2H), 7.11 (d, J=8.1 Hz, 2H), 6.90 (d, J=8.1 Hz, 2H), 6.50 (t, J=6.0 Hz, 1H), 4.22 (d, J=5.7 Hz, 2H), 3.74 (d, J=1.3 Hz, 3H), 3.46 (s, 2H).
Intermediates 1.2 and 1.3 were prepared in a similar manner as Intermediate 1.1, using the reagents provided in the table below in place of 4-methoxy benzyl isocyanate.
2-(4-(3-(4-chlorobenzyl)ureido)phenyl)acetic acid. LCMS-ESI (POS.) m/z: 319.0 (M + H)+. 1H NMR (400 MHz, DMSO-d6) δ 12.24 (s, 1H), 8.58 (s, 1H), 7.43-7.36 (m, 2H), 7.36-7.30 (m, 4H), 7.11 (d, J = 8.0 Hz, 2H), 6.66 (t, J = 6.0 Hz, 1H), 3.46 (s, 2H), 4.28 (d, J = 5.9 Hz, 2H).
2-(4-(3-(4-fluorobenzyl)ureido)phenyl)acetic acid. LCMS-ESI (POS.) m/z: 303.0 (M + H)+. 1H NMR (400 MHz, DMSO-d6) δ 12.45-12.04 (m, 1H), 8.54 (s, 1H), 7.34 (dd, J = 8.3, 5.6 Hz, 4H), 7.23-7.03 (m, 4H), 6.61 (t, J = 6.0 Hz, 1H), 4.28 (d, J = 5.9 Hz, 2H), 3.46 (s, 2H).
4-(3-(4-methoxybenzyl)ureido)benzoic acid. LCMS-APCI (POS.) m/z: 301.1 (M + H)+. 1H NMR (400 MHz, DMSO-d6) δ 9.72 (s, 1 H), 7.83 (t, J = 5.7 Hz, 1 H), 7.76 (d, J = 8.6 Hz, 2 H), 7.39 (d, J = 8.6 Hz, 2 H), 7.25 (d, J = 8.6 Hz, 2 H), 6.88 (d, J = 8.6 Hz, 2 H), 4.22 (d, J = 5.8 Hz, 2 H), 3.72 (s, 3 H).
To a solution of (S)-[1-(4-amino-phenyl)-ethyl]-carbamic acid tert-butyl ester (2.0 g, 22.7 mmol) in DCM (20 mL) at 20 C was added 4-methoxy benzyl isocyanate (14.4 g, 34.0 mmol) dropwise. The resulting mixture was stirred at room temperature for 4 hours then methanol (10 mL) was added and cooled to 0° C. After 1 hour at 0° C. the slurry was filtered providing the tert-Butyl (S)-(1-(4-(3-(4-methoxybenzyl)ureido)-phenyl)ethyl)carbamate (1.2 g, 6.3 mmol, 28% yield) as an off-white solid. LCMS-APCI (POS.) m/z: 400.1 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.43 (s, 1H), 7.36-7.19 (m, 4H), 7.14 (d, J=8.2 Hz, 2H), 6.89 (d, J=8.2 Hz, 2H), 6.48 (t, J=5.9 Hz, 1H), 4.53 (p, J=7.3 Hz, 1H), 4.21 (d, J=5.7 Hz, 2H), 3.73 (s, 3H), 1.37 (s, 9H), 1.27 (d, J=7.0 Hz, 3H).
Intermediate 2-a (34.7 g, 86.9 mmol) was dissolved in dichloromethane and cooled to 0° C. with an ice bath. Hydrogen chloride (4 N in 1, 4-dioxane, 174 mL, 695 mmol) was added dropwise using a syringe, and the resulting mixture was stirred at 0° C. for 5 minutes before the ice bath was removed. The reaction was stirred at room temperature for 45 minutes and the reaction progress was monitored with LC/MS. It was quenched with triethylamine (28 mL) and the resulting mixture was concentrated in vacuo, providing a white solid. The solid was partitioned between saturated NaHCO3 solution and DCM. The layers were separated and the aqueous phase was extracted with additional DCM. The organic extracts were combined, dried over Na2SO4 and concentrated under reduced pressure, providing (S)-1-(4-(1-aminoethyl)phenyl)-3-(4-methoxybenzyl)urea hydrochloride (6.18 g, 18.28 mmol, 90% yield) as a viscous, nearly colorless oil. The purity was estimated to be 70%. LCMS-APCI (POS.) m/z: 300.1 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 9.14 (s, 1H), 8.40 (d, J=5.3 Hz, 3H), 7.45 (d, J=8.3 Hz, 2H), 7.36 (d, J=8.3 Hz, 2H), 7.23 (d, J=8.2 Hz, 2H), 6.89 (d, J=8.2 Hz, 3H), 4.29 (p, J=6.1 Hz, 1H), 4.22 (s, 2H), 3.73 (s, 3H), 1.49 (d, J=6.7 Hz, 3H).
Intermediates 2.2, 2.3, 2.4, 2.5, 2.6, and 2.7 were prepared in a similar manner as Intermediate 2.1, using the reagents provided in the table below in place of 4-methoxy benzyl isocyanate.
(S)-1-(4-(1-aminoethyl)phenyl)-3-(4- chlorobenzyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 304.0 (M + H)+.
(R)-1-(4-(1-aminoethyl)phenyl)-3-(4- chlorobenzyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 304.0 (M + H)+.
1-(4-(aminom ethyl)phenyl)-3-(4- methoxybenzyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 286.1 (M + H)+.
1-(4-(aminomethyl)phenyl)-3-(4- chlorobenzyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 290.0 (M + H)+.
(S)-1-(4-(1-aminoethyl)phenyl)-3-(4- fluorobenzyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 274.0 (M + H)+.
1-(4-methoxybenzyl)-3-(4- ((methylamino)methyl)phenyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 300.1 (M + H)+.
1-(4-chlorobenzyl)-3-(4- ((methylamino)methyl)phenyl)urea hydrochloride. LCMS-ESI (POS.) m/z: 304.1 (M + H)+.
To a suspension of methyl 4-isocyanatobenzoate (10.0 g, 56.4 mmol) in methylene chloride (56.4 mL, 1M) was added (4-methoxyphenyl)methanamine (7.74 g, 56.4 mmol) dropwise at 0° C. The reaction was gradually warmed to rt and stirred at room temperature for 60 minutes and the reaction progress was monitored with LC/MS. The reaction became homogenous followed by the white solid precipitation. The solution was then filtered, and the filter cake was washed with excess methylene chloride and dried to afford crude Intermediate 3-a (17.4 g, 55.2 mmol, 98% yield) as an off-white solid set up. LCMS-APCI (POS.) m/z: 315.2 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.96 (s, 1H), 7.85 (d, J=8.6 Hz, 2H), 7.54 (d, J=8.8 Hz, 2H), 7.24 (d, J=8.5 Hz, 2H), 6.90 (d, J=8.5 Hz, 2H), 6.71 (t, J=5.9 Hz, 1H), 4.25 (d, J=5.7 Hz, 2H), 3.73 (s, 3H), 3.81 (s, 3H).
To a dry flask was added Intermediate 3-a (16.0 g, 50.9 mmol) in 120 mL dry methylene chloride and the suspension was cooled to 0° C. Next 1M DIBAL in methylene chloride (126 mL, 126 mmol) was added dropwise over 45 minutes and the reaction was stirred at 0° C. for an additional 30 minutes. The homogenous solution was allowed to warm to room temperature and then stirred for 4 h. The solution was subsequently cooled to 0° C. and quenched by MeOH (100 mL) dropwise and after exotherm subsided 300 mL of methylene chloride and 200 mL of sodium hydroxide solution (1M) added and the mixture was stirred for another 60 minutes at room temperature. Then the organic layer was separated and the aqueous layer was extracted with (5:1 methylene chloride-isopropanol, 300 mL) The combined organic layer was washed with brine and dried over magnesium sulfate, filtered, and evaporated to produce Intermediate 3-b as a white solid (14.2 g, 49.8 mmol, 99% yield). The crude product was taken through the following oxidation stage with further purification. LCMS-APCI (POS.) m/z: 287.2 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.61 (s, 1H), 7.35 (d, J=8.0 Hz, 2H), 7.24 (d, J=8.2 Hz, 2H), 7.17 (d, J=8.1 Hz, 2H), 6.90 (d, J=8.2 Hz, 2H), 6.61 (t, J=5.9 Hz, 1H), 5.02 (t, J=5.7 Hz, 1H), 4.40 (d, J=5.5 Hz, 2H), 4.22 (d, J=5.7 Hz, 2H), 3.74 (s, 3H).
To a suspension of Intermediate 3-b (14.0 g, 48.8 mmol) in methylene chloride-isopropanol (20:1, 250 mL, 0.2 M) was added manganese dioxide (44.2 g, 508 mmol) at room temperature. The resulting suspension was allowed to stir for 12 hours at rt. The solution was then filtered over celite. The filter cake was washed with isopropanol and the mother liquor was concentrated to provide Intermediate 3.1 (13.2 g, 46.5 mmol) as a light yellow solid set up. LCMS-APCI (POS.) m/z: 285.2 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 9.81 (s, 1H), 9.15 (s, 1H), 7.78 (dd, J=8.6, 2.7 Hz, 2H), 7.62 (dd, J=8.6, 2.7 Hz, 2H), 7.24 (dd, J=8.5, 2.8 Hz, 2H), 6.90 (dd, J=8.6, 2.7 Hz, 2H), 6.87-6.77 (m, 1H), 4.43 (dd, J=8.5, 2.8 Hz, 2H), 3.74 (s, 3H).
Intermediates 3.2 and 3.3 were prepared in a similar manner as Intermediate 2.1, using the reagents provided in the table below in place of (4-methoxyphenyl)methanamine.
1-(4-formylphenyl)-3-(4-chlorobenzyl)urea. LCMS-ESI (POS.) m/z: 289.2 (M + H)+.
1-(4-formylphenyl)-3-(4-fluorobenzyl)urea. LCMS-ESI (POS.) m/z: 273.2 (M + H)+.
To a solution of 1-(4-chlorophenyl)methanamine (2.00 g, 14.124 mmol, 1.00 equiv) in THF(30 mL) were added phenyl carbonochloridate (2.43 g, 15.537 mmol, 1.1 equiv) and K2CO3 (2.93 g, 21.186 mmol, 1.5 equiv). The resulting mixture was stirred at r.t. for 3 h, filtered to remove solids, and the filtrate was concentrated and purified by silica gel column chromatography, eluted with PE/EtOAc (5:1) to afford 3.6 g of phenyl N-[(4-chlorophenyl)methyl]carbamate (95%) as a white solid. LRMS (ES) m/z 262[M+H].
Intermediate 4.2 was prepared in a similar manner as Intermediate 4.1, using (4-methoxyphenyl)methanamine in place of (4-chlorophenyl)methanamine.
To a solution of 1-(bromomethyl)-4-nitrobenzene (1 g, 4.629 mmol, 1 equiv) in DMF (10 mL) was added sodium methanesulfinate (712 mg, 6.975 mmol, 1.51 equiv). The resulting mixture was stirred at 65° C. for 0.5 h, cooled to r.t., added water (20 mL) and the mixture was extracted with EtOAc (20 mL) twice. The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to give 1 g of 1-(methanesulfonylmethyl)-4-nitrobenzene as a yellow solid. (No LCMS signal, H-NMR confirmed). 1H NMR (300 MHz, DMSO-d6) δ 8.34-8.23 (m, 2H), 7.76-7.65 (m, 2H), 4.73 (s, 2H), 2.99 (s, 3H).
To a solution of 1-(methanesulfonylmethyl)-4-nitrobenzene (850 mg, 3.949 mmol, 1 equiv) in DMF (10 mL) was added t-BuOK (531 mg, 4.732 mmol, 1.20 equiv). After stirring at r.t. for 1 h, the mixture was added iodomethane (560 mg, 3.945 mmol, 1.00 equiv). The resulting mixture was stirred at r.t. for 1 h, added water (20 mL). The mixture was extracted with EtOAc (20 mL) twice. The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to give 950 mg of 1-(1-methanesulfonylethyl)-4-nitrobenzene as a yellow oil. No LCMS signal. H-NMR analysis indicated it was the desired product. 1H NMR (400 MHz, DMSO-d6) δ 8.33-8.23 (m, 2H), 7.79-7.67 (m, 2H), 4.82 (q, J=7.1 Hz, 1H), 2.91 (s, 3H), 1.69 (d, J=7.1 Hz, 3H).
To a solution of 1-(1-methanesulfonylethyl)-4-nitrobenzene (950 mg, 4.144 mmol, 1 equiv) in methanol (10 mL) was added Pd/C (467 mg, 50% w/w). The resulting mixture was stirred at r.t. for 1 h under hydrogen atmosphere, filtered to remove solids and the filtrate was concentrated under reduced pressure to give 700 mg of 4-(1-methanesulfonylethyl)aniline as a yellow oil. LRMS (ES) m/z 200[M+H].
To a solution of 1-bromo-4-nitrobenzene (5 g, 24.752 mmol, 1 equiv) in DMSO (50 mL) were added 1,3-diethyl propanedioate (12 g, 74.921 mmol, 3.03 equiv), CuI (473 mg, 2.484 mmol, 0.10 equiv), L-Proline (572 mg, 4.968 mmol, 0.20 equiv) and K2CO3 (13.7 g, 99.128 mmol, 4.00 equiv). The mixture was stirred at 90° C. for 2 days under nitrogen atmosphere, cooled to r.t., added water (100 mL) and extracted with EtOAc (100 mL) twice. The combined organic layers were washed twice with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (20:1) to afford 4.7 g of 1,3-diethyl 2-(4-nitrophenyl)propanedioate as a yellow oil. LRMS (ES) m/z 282 (M+H).
To a solution of 1,3-diethyl 2-(4-nitrophenyl)propanedioate (2.2 g, 7.822 mmol, 1 equiv) in ethanol (25 mL) was added Pd/C (1.10 g, 50% w/w). The resulting mixture was stirred at r.t. for 2 h under hydrogen atmosphere, filtered to remove the solids, and the filtrate was concentrated under reduced pressure to give 1.9 g of 1,3-diethyl 2-(4-aminophenyl)propanedioate (96.67%) as a yellow oil. LRMS (ES) m/z 252[M+H].
To a solution of 1,3-diethyl 2-(4-aminophenyl)propanedioate (1 g, 3.96 mmol, 1 equiv) in THE (10 mL) was added di-tert-butyl dicarbonate (2.6 g, 11.4 mmol, 2.9 equiv). The resulting mixture was stirred at r.t. for 2 h, added water (30 mL) and the mixture was extracted with CH2Cl2 (30 mL) twice. The combined organic layers were washed twice with brine (30 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (10:1) to afford 1 g of 1,3-diethyl 2-(4-[[(tert-butoxy)carbonyl]amino]phenyl)propanedioate as an off-white solid. LRMS (ES) m/z 296[M+H−56].
To a solution of 1,3-diethyl 2-(4-[[(tert-butoxy)carbonyl]amino]phenyl)propanedioate (1 g, 2.846 mmol, 1 equiv) in ethanol (20 mL) was added NaBH4 (1.08 g, 28.547 mmol, 10.03 equiv). The resulting mixture was stirred at r.t. for overnight, quenched with NH4Cl.aq (10 mL) at 0° C., concentrated under vacuum to remove EtOH. The mixture was extracted with EtOAc (20 mL) twice. The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with CH2Cl2/MeOH (20:1) to afford 720 mg of tert-butyl N-[4-(1,3-dihydroxypropan-2-yl)phenyl]carbamate (94.64%) as an off-white solid. LRMS (ES) m/z 212[M+H−56].
To a solution of tert-butyl N-[4-(1,3-dihydroxypropan-2-yl)phenyl]carbamate (670 mg, 2.506 mmol, 1 equiv) in DCM (10 mL) were added methanesulfonyl chloride (715 mg, 6.242 mmol, 2.49 equiv) and TEA (760 mg, 7.511 mmol, 3.00 equiv). The resulting mixture was stirred at r.t. for 2 h and poured into water (20 mL). The aqueous layer was extracted with CH2Cl2 (20 mL) twice. The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to give 1.2 g of tert-butyl N-[4-[2-(methanesulfonyloxy)-1-[(methanesulfonyloxy)methyl]ethyl]phenyl]carbamate as a yellow solid. LRMS (ES) m/z 368[M+H−56].
To a solution of tert-butyl N-[4-[2-(methanesulfonyloxy)-1-[(methanesulfonyloxy)methyl]ethyl]phenyl]carbamate (1.1 g, 2.597 mmol, 1 equiv) in DMF (10 mL) at r.t. was added Na2S (122 mg, 1.564 mmol, 0.60 equiv). The resulting mixture was stirred at 100° C. for 5 h. The solution was then cooled to r.t. and poured into water (20 mL). The aqueous layer was extracted with EtOAc (30 mL) twice. The combined organic layers were washed twice with brine (30 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (5:1) to afford 270 mg of tert-butyl N-[4-(thietan-3-yl)phenyl]carbamate (39.17%) as a yellow solid. LRMS (ES) m/z 210[M+H−56].
To a solution of tert-butyl N-[4-(thietan-3-yl)phenyl]carbamate (250 mg, 0.942 mmol, 1 equiv) in DCM (3 mL) at 0° C. was added m-CPBA (485 mg, 2.811 mmol, 2.98 equiv). The resulting mixture was stirred at r.t. for 2 h and added water (20 mL). The resulting mixture was extracted with CH2Cl2 (20 mL) twice. The combined organic layers were washed with Na2S2O4(10 mL), NaHCO3(10 mL) and twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to give 290 mg of tert-butyl N-[4-(1,1-dioxo-1lambda6-thietan-3-yl)phenyl]carbamate as a yellow oil. LRMS (ES) m/z 242 [M+H−56].
To a solution of tert-butyl N-[4-(1,1-dioxo-1lambda6-thietan-3-yl)phenyl]carbamate (290 mg, 0.975 mmol, 1 equiv) in DCM (3 mL) was added TFA (0.5 mL). The resulting mixture was stirred at r.t. for 2 h, concentrated under reduced pressure to give 190 mg of 3-(4-aminophenyl)thietane 1,1-dioxide trifluoroacetate salt as a brown solid. LRMS (ES) m/z 298[M+H].
To a solution of tetrahydrothiophene 1,1-dioxide (2 g, 16.643 mmol, 1.00 equiv) in THF (20.00 mL) at −20° C. was added LiHMDS (25.00 mL, 25.000 mmol, 1.50 equiv) dropwise over a period of 20 min under nitrogen atmosphere. After stirring at r.t. for 0.5 h under nitrogen atmosphere, the mixture was added ZnCl2 (3.35 g, 24.575 mmol, 1.48 equiv) at −20° C. The mixture was stirred at r.t. for 1 h. To the above mixture were added 1-bromo-4-nitrobenzene (2.35 g, 11.650 mmol, 0.70 equiv), Pd(OAc)2 (187.00 mg, 0.833 mmol, 0.05 equiv) and X-Phos (795.00 mg, 1.668 mmol, 0.10 equiv). The mixture was stirred at 65° C. for 12 h under nitrogen atmosphere, cooled to r.t., quenched with aqueous NH4Cl (20 mL) and HCl (1 mol/L, 5 mL) and extracted with CH2Cl2 (50 mL) twice. The combined organic layers were washed twice with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (3:2) to afford 1.1 g of 2-(4-nitrophenyl)tetrahydrothiophene 1,1-dioxide (27.40%) as a brown solid. No LCMS signal.
To a solution of 2-(4-nitrophenyl)tetrahydrothiophene 1,1-dioxide (1.10 g, 4.559 mmol, 1.00 equiv) in methanol (11 mL) was added Pd/C (550.00 mg, 50% w/w). The resulting mixture was stirred at r.t. for overnight under hydrogen atmosphere, filtered to remove solids, and the filtrate was concentrated under reduced pressure to afford 800 mg of 2-(4-aminophenyl)tetrahydrothiophene 1,1-dioxide (83.05%) as a yellow solid. LRMS (ES) m/z 212[M+H].
To a solution of 4-iodoaniline (1 g, 4.566 mmol, 1 equiv) in MeOH (20 mL) were added (Boc)2O (2 g, 0.009 mmol, 2.01 equiv) and TEA (2 mL). The resulting mixture was stirred at 50° C. for overnight, cooled to r.t., concentrated under vacuum, added water (50 mL). The mixture was extracted with EtOAc (50 mL) twice. The combined organic layers were washed twice with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (30:1) to afford 650 mg of tert-butyl N-(4-iodophenyl)carbamate (650 mg, 44.61%) as an off-white solid. LRMS (ES) m/z 264[M+H−56].
To a solution of tert-butyl N-(4-iodophenyl)carbamate (650 mg, 2.037 mmol, 1 equiv) in Toluene (10 mL) were added 2,5-dihydro-1lambda6-thiophene-1,1-dione (264 mg, 2.234 mmol, 1.10 equiv), Pd(OAc)2 (91 mg, 0.405 mmol, 0.20 equiv), TBABr (654 mg, 2.029 mmol, 1.00 equiv) and TEA (410 mg, 4.052 mmol, 1.99 equiv). The resulting mixture was stirred at r.t. for 3 days under nitrogen atmosphere and at 80° C. for 3 h, cooled to r.t., added water (20 mL). The mixture was extracted with EtOAc (30 mL) twice. The combined organic layers were washed twice with brine (30 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (3:2) to afford 430 mg of tert-butyl N-[4-(1,1-dioxo-2,5-dihydro-1lambda6-thiophen-3-yl)phenyl]carbamate (68.24%) as a brown solid. LRMS (ES) m/z 254[M+H−56].
To a solution of tert-butyl N-[4-(1,1-dioxo-2,5-dihydro-1lambda6-thiophen-3-yl)phenyl]carbamate (430 mg, 1.390 mmol, 1 equiv) in methanol (10 mL) was added Pd/C (215 mg, 50% w/w). The resulting mixture was stirred at r.t. for 1 h under hydrogen atmosphere, filtered to remove solids, and the filtrate was concentrated under reduced pressure to afford 390 mg of tert-butyl N-[4-(1,1-dioxo-1lambda6-thiolan-3-yl)phenyl]carbamate (90.11%) as a brown solid. LRMS (ES) m/z 256[M+H].
To a solution of tert-butyl N-[4-(1,1-dioxo-1lambda6-thiolan-3-yl)phenyl]carbamate (390 mg, 1.252 mmol, 1 equiv) in DCM (5 mL) was added TFA (1 mL). The resulting mixture was stirred at r.t. for 2 h, concentrated under reduced pressure, diluted with water (10 mL) and adjusted pH to 8 with Na2CO3 aq. The aqueous layer was extracted with EA (10 ml) twice. The combined organic layers were washed twice with brine (10 mL), dried over Na2SO4, concentrated under reduced pressure to give 260 mg of 3-(4-aminophenyl)tetrahydrothiophene 1,1-dioxide trifluoroacetate salt as a brown oil. LRMS (ES) m/z 212[M+H].
To a solution of LDA (8.5 mL, 17.0 mmol, 1.10 equiv) in THF (20 mL) at −78° C. was added a solution of thian-4-one (1.8 g, 15.493 mmol, 1 equiv) in THF (5 mL) dropwise over a period of 10 min under argon atmosphere. After stirring at r.t. for 0.5 h under argon atmosphere, the mixture at −78° C. was added a solution of 1,1,1-trifluoro-N-phenyl-N-trifluoromethanesulfonylmethanesulfonamide (6.09 g, 17.047 mmol, 1.10 equiv) in THF(10 mL) dropwise over a period of 10 min. The resulting mixture was stirred at r.t. for 0.5 h under argon atmosphere, quenched with water (100 mL) at 0° C. and extracted with EtOAc (200 mL) twice. The combined organic layers were washed twice with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (99:1) to afford 2.5 g of 3,6-dihydro-2H-thiopyran-4-yl trifluoromethanesulfonate as a yellow oil. LRMS (ES) m/z 249[M+H].
To a solution of 3,6-dihydro-2H-thiopyran-4-yl trifluoromethanesulfonate (2.4 g, 9.668 mmol, 1 equiv) in dioxane (20 mL) and H2O (10 mL) were added (4-nitrophenyl)boronic acid (1.94 g, 11.602 mmol, 1.20 equiv), Pd(dppf)Cl2CH2Cl2 (1.58 g, 1.934 mmol, 0.20 equiv) and K2CO3 (2.66 g, 19.34 mmol, 2 equiv). The resulting mixture was stirred at 85° C. for 3 h under nitrogen atmosphere, cooled to r.t., and added water (200 mL). The resulting mixture was extracted with EtOAc (200 mL) twice. The combined organic layers were washed twice with brine (200 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (20:1) to afford 1 g of 4-(4-nitrophenyl)-3,6-dihydro-2H-thiopyran (46.74%) as a yellow solid. LRMS (ES) m/z 222[M+H].
To a solution of 4-(4-nitrophenyl)-3,6-dihydro-2H-thiopyran (700 mg, 3.164 mmol, 1 equiv) in DCM (15 mL) at −78° C. was added m-CPBA (1.6 g, 9.5 mmol, 3 equiv). The resulting mixture was stirred at r.t. for 3 h, poured into water (20 mL). The aqueous layer was extracted with CH2Cl2 (30 mL) twice. The combined organic layers were washed with Na2SO3(aq. 10 mL), NaHCO3 (aq.10 mL) and twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to give 650 mg of 4-(4-nitrophenyl)-3,6-dihydro-2H-thiopyran 1,1-dioxide as a yellow solid. LRMS (ES) m/z 254[M+H].
To a solution of 4-(4-nitrophenyl)-3,6-dihydro-2H-thiopyran 1,1-dioxide (650 mg, 2.559 mmol, 1 equiv) in methanol (8 mL) and THE (8 mL) was added Pd/C (325 mg, 50% w/w). The resulting mixture was stirred at r.t. for overnight under hydrogen atmosphere, filtered to remove solids, and the filtrate was concentrated under reduced pressure to give 400 mg of 4-(4-aminophenyl)tetrahydro-2H-thiopyran 1,1-dioxide as a brown solid. LRMS (ES) m/z 226 [M+H].
To a solution of 1-(4-nitrophenyl)ethan-1-one (2 g, 12.110 mmol, 1 equiv) in AcOH (6 mL) and toluene (40 mL) were added ethyl 2-cyanoacetate (1.37 g, 12.111 mmol, 1.00 equiv) and NH4OAc (187 mg, 2.426 mmol, 0.20 equiv). The resulting mixture was stirred at 110° C. for overnight, cooled to r.t., and poured into water (50 mL). The resulting mixture was extracted with EtOAc (50 mL) twice. The combined organic layers were washed twice with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (10:1) to afford 1.7 g of ethyl (Z)-2-cyano-3-(4-nitrophenyl)but-2-enoate (53.94%) as a yellow solid. LRMS (ES) m/z 261 (M+H).
To a solution of NaOEt (2 g, 6.176 mmol, 1.00 equiv, 21%) in EtOH (30 mL) at 0° C. was added 2-cyanoacetamide (517 mg, 6.149 mmol, 1.00 equiv) dropwise over a period of 5 min. After stirring at r.t. for 15 min, ethyl (2Z)-2-cyano-3-(4-nitrophenyl)but-2-enoate (1.6 g, 6.148 mmol, 1 equiv) was added. The resulting mixture was stirred at r.t. for 4 h, concentrated under reduced pressure. The residue was dissolved in water (20 mL) and the mixture was acidified to pH 1 with HCl (aq.4 mol/L, ˜5 mL). The precipitated solids were collected by filtration and dried under reduced pressure to give 1.2 g of 4-methyl-4-(4-nitrophenyl)-2,6-dioxopiperidine-3,5-dicarbonitrile (65.44%) as a yellow solid. No LCMS signal. H-NMR confirmed. 1H NMR (400 MHz, DMSO-d6) δ 12.43 (s, 1H), 8.42-8.34 (m, 3H), 8.02-7.94 (m, 2H), 5.43 (s, 2H), 1.76 (s, 3H).
To a solution of 4-methyl-4-(4-nitrophenyl)-2,6-dioxopiperidine-3,5-dicarbonitrile (1.1 g, 3.688 mmol, 1 equiv) in H2O (9 mL) at 0° C. were added sulfuric acid (9 mL) and AcOH (6 mL) dropwise over a period of 15 min. The resulting mixture was stirred at 100° C. for 2 days, cooled to r.t., diluted with ice-cold water (30 mL) and extracted with EtOAc (30 mL) twice. The combined organic layers were washed twice with brine (50 mL) twice, dried over anhydrous Na2SO4, concentrated under reduced pressure to give 1.2 g of 3-methyl-3-(4-nitrophenyl)pentanedioic acid as a brown semi-solid. LRMS (ES) m/z 268 (M+H).
To a solution of 3-methyl-3-(4-nitrophenyl)pentanedioic acid (1.1 g, 4.1 mmol, 1 equiv) in THF (10 mL) at 0° C. was added BH3-THF (1 mol/L in THF, 41 mL, 41 mmol, 10 equiv) dropwise over a period of 15 min. The resulting mixture was stirred at 70° C. for 1.5 h, cooled to r.t., quenched with water (30 mL) at 0° C., and extracted with EtOAc (30 mL) twice. The combined organic layers were washed twice with brine (30 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to give 720 mg of 3-methyl-3-(4-nitrophenyl)pentane-1,5-diol (82.06%) as a brown oil. LRMS (ES) m/z 240 (M+H).
To a solution of 3-methyl-3-(4-nitrophenyl)pentane-1,5-diol (720 mg, 3.009 mmol, 1 equiv) in DCM (10 mL) at 0° C. were added TEA (912 mg, 9.013 mmol, 3.00 equiv) and methanesulfonyl chloride (859 mg, 7.500 mmol, 2.49 equiv) dropwise. The resulting mixture was stirred at r.t. for 2 h, poured into water (10 mL). The aqueous layer was extracted with CH2Cl2 (10 mL) twice. The combined organic layers were washed twice with brine (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (3:2) to afford 410 mg of 5-(methanesulfonyloxy)-3-methyl-3-(4-nitrophenyl)pentyl methanesulfonate (34.46%) as a yellow oil. LRMS (ES) m/z 396 (M+H).
To a solution of 5-(methanesulfonyloxy)-3-methyl-3-(4-nitrophenyl)pentyl methanesulfonate (410 mg, 1.037 mmol, 1 equiv) in ACN (5 mL) was added Na2S (49.33 mg, 0.632 mmol, 0.61 equiv). The resulting mixture was stirred at 80° C. for overnight under nitrogen atmosphere, cooled to r.t., added water (20 mL). The mixture was extracted with EtOAc (20 mL) twice. The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (20:1) to afford 130 mg of 4-methyl-4-(4-nitrophenyl)tetrahydro-2H-thiopyran (52.83%) as a yellow oil. LRMS (ES) m/z 238 (M+H).
To a solution of 4-methyl-4-(4-nitrophenyl)thiane (130 mg, 0.548 mmol, 1 equiv) in DCM (3 mL) was added m-CPBA (283 mg, 1.640 mmol, 2.99 equiv). The resulting mixture was stirred at r.t. for 2 h, poured into water (10 mL). The aqueous layer was extracted with CH2Cl2 (10 mL) twice. The combined organic layers were washed with Na2S2O4 (5 mL) and twice with brine (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 170 mg of 4-methyl-4-(4-nitrophenyl)tetrahydro-2H-thiopyran 1,1-dioxide as a yellow solid. LRMS (ES) m/z 270 (M+H).
To a solution of 4-methyl-4-(4-nitrophenyl)tetrahydro-2H-thiopyran 1,1-dioxide (170 mg, 0.631 mmol, 1 equiv) in methanol (3 mL) was added Pd/C (85 mg, 50% w/w). The resulting mixture was stirred at r.t. for 1.5 h under hydrogen atmosphere, filtered to remove solids and the filtrate was concentrated under reduced pressure to afford 100 mg of 4-(4-aminophenyl)-4-methyltetrahydro-2H-thiopyran 1,1-dioxide (66.19%) as a brown oil. LRMS (ES) m/z 240 (M+H).
LiHMDS (22.2 mL, 22.2 mmol, 1.1 equiv, 1 M in THF) was added to a stirring solution of 3-methylpyrrolidin-2-one (8.7 g, 20.2 mmol, 1 equiv) in THE (20 mL) at 0° C. After 1 h, benzyl bromide (27 g, 125 mmol, 1.25 equiv) in THE (20 mL) were added and the reaction allowed to return to rt over 12 h. The reaction was dry loaded onto silica and product isolated by silica chromotography (0->100% EtOAc/Hex) as a red tinged solid (24.1 g, 72%). LC/MS (APCI) m/z: 235.1 [M+H]. 1H NMR (400 MHz, Chloroform-d) δ 8.17 (d, J=8.8 Hz, 2H), 7.38 (d, J=8.4 Hz, 2H), 4.61-4.43 (m, 2H), 3.21 (dd, J=8.2, 5.4 Hz, 2H), 2.55 (t, J=8.1 Hz, 1H), 2.33-2.19 (m, 1H), 1.64 (dq, J=12.2, 8.6 Hz, 1H), 1.23 (d, J=7.1 Hz, 3H).
Intermediate 11.2-11.15 were prepared in a similar manner as Intermediate 11.1
Sodium triacetoxyborohydride (11 g, 53 mmol, 2 equiv) was added to a stirring solution of (4-nitrophenyl)methanamine hydrochloride (5 g, 26.5 mmol, 1 equiv), ethyl 4-oxopentanoate (4.2 g, 29.2 mmol, 1.1 equiv), and triethylamine (3.6 mL, 26.5 mmol, 1 equiv) in DCM (200 mL) at rt. After 14 h, the reaction was dry loaded onto silica and product isolated by silica chromatography as a white solid (5 g, 81%). LC/MS (APCI) m/z: 235.1 [M+H]. 1H NMR (400 MHz, Chloroform-d) δ 8.20 (d, J=8.3 Hz, 2H), 7.43 (d, J=8.3 Hz, 2H), 4.90 (d, J=15.6 Hz, 1H), 4.25 (d, J=15.6 Hz, 1H), 3.58 (h, J=6.3 Hz, 1H), 2.50 (dtd, J=34.1, 17.1, 9.5 Hz, 2H), 2.23 (ddd, J=13.3, 11.0, 6.8 Hz, 1H), 1.67 (ddt, J=13.2, 9.3, 6.8 Hz, 1H), 1.18 (d, J=6.2 Hz, 3H).
Intermediate 12.2 was prepared in a similar manner as Intermediate 12.1
3-Methyl-1-(4-nitrobenzyl)pyrrolidin-2-one (3 g, 12.8 mmol, 1 equiv) and PtO2 (0.29 g, 1.28 mmol, 0.1 equiv) were stirred under H2 (80 psi) for 1 h. The reaction was filtered through a pad of celite, solvent removed by rotary evaporated, and dried under high vacuum to give the product as a red tinged solid (2.6 g, 99%). LC/MS (APCI) m/z: 205.2 [M+H].
Intermediates 13.2-13.36 were prepared in a similar manner as Intermediate 13.1
tert-Butyl 4-(4-nitrobenzyl)-3-oxopiperazine-1-carboxylate (Intermediate 11.2, 24.1 g, 71.9 mmol, 1 equiv) was suspended 4M HCl in dioxanes (180 mL, 719 mmol, 10 equiv) at rt. After 2 h, the solvent was removed by rotary evaporation and dried under high vacuum to give the desired product as a white solid (19.5 g, 99.9%). LCMS-APCI (POS.) m/z: 236.1 (M+H)+.
Formaldehyde (17.47 g, 215.3 mmol, 3 equiv, 37% in water) and AcOH (12.9 mL, 215.3 mmol, 3 equiv) were added to a stirring suspension of 1-(4-nitrobenzyl)piperazin-2-one hydrochloride (19.5 g, 71.8 mmol, 1 equiv) in MeOH (800 mL) at rt. After 10 min the reaction became homogenous and was subsequently cooled to 0° C. before NaCNBH3 (9.9 g, 157.9 mmol, 2.2 equiv) was added and the reaction warmed to rt. After 3 h, the total volume was reduced to −400 mL by rotary evaporation, quenched with saturated sodium bicarbonate (1 L), extracted with DCM (3×750 mL), organics combined, dried over sodium sulfate, filtered, and solvent removed by rotary evaporation. The oily yellow product then crystalized overnight under high vacuum to give the product as pale yellow crystals (17 g, 95%). LCMS-APCI (POS.) m/z: 250.1 (M+H)+. 1H NMR (400 MHz, Chloroform-d) δ 8.11 (d, J=8.7 Hz, 2H), 7.35 (d, J=8.7 Hz, 2H), 4.62 (s, 2H), 3.25-3.18 (m, 2H), 3.14 (s, 2H), 2.63-2.53 (m, 2H), 2.28 (s, 3H).
Intermediates 14.2-14.6 was prepared in a similar manner as Intermediate 14.1
(4-Nitrophenyl)methanesulfonyl chloride (500 mg, 2.12 mmol, 1 equiv) was added to a stirring solution of azetadine (121 mg, 2.12 mmol, 1 equiv) and diisoproylethylamine (1.1 mL, 6.4 mmol, 3 equiv) in DCM (5 mL) at rt. After 1 h, the reaction was washed with saturated sodium bicarbonate (5 mL), dried over sodium sulfate, filtered, and solvent removed by rotary evaporation. The crude material was resolved by silica chromatography (0->3% MeOH/DCM) to give 1-((4-nitrobenzyl)sulfonyl)azetidine (110 mg, 20%). LCMS-APCI (Neg.) m/z: 255.2 (M−H). 1H NMR (400 MHz, DMSO-d6) δ 8.27 (d, J=8.8 Hz, 1H), 7.72 (d, J=8.8 Hz, 1H), 4.73 (s, 1H), 3.89 (t, J=7.7 Hz, 2H), 2.19 (p, J=7.7 Hz, 1H).
1-((4-nitrobenzyl)sulfonyl)azetidine (110 mg, 0.43 mmol, 1 equiv) and PtO2 (5 mg, 0.022 mmol, 0.05 equiv) were suspended in MeOH (5 mL) before being stirred under H2 for 12 h. The reaction was filtered through a 0.45 μm PTFE syringe filter and solvent removed by rotary evaporation to give the product (90 mg, 93%). LCMS-APCI (POS.) m/z: 227.2 (M+H)+.
Intermediates 15.2-15.4 were prepared in a similar manner as Intermediate 15.1
To a stirred solution of 1-(4-chlorophenyl)methanamine (10.00 g, 70.621 mmol, 1 equiv) and NEt3 (10.72 g, 105.9 mmol, 1.5 equiv) in THE (100 mL) at 0° C. was added phenyl chloroformate (12.16 g, 77.6 mmol, 1.1 equiv) dropwise over a period of 15 min. The resulting mixture was stirred at r.t. for 3 h, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (4:1) to afford 17.76 g (91.38%) of phenyl (4-chlorobenzyl)carbamate as a pink solid. LCMS-APCI (POS.) m/z: 362 (M+H)+.
To a stirred solution of phenyl (4-chlorobenzyl)carbamate (7.80 g, 29.8 mmol, 1.2 equiv) and 4-aminobenzaldehyde (3.00 g, 24.8 mmol, 1 equiv) in i-PrOH (30.00 mL) were added diisopropylethylamine (16.00 g, 123.8 mmol, 5 equiv). The resulting mixture was stirred at 90° C. for overnight, cooled down to r.t., added water (100 mL) and extracted twice with EtOAc (100 mL). The combined organic layers were washed twice with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (2:1) to afford 2.04 g (27%) of 1-(4-chlorobenzyl)-3-(4-formylphenyl)urea as a yellow solid. LCMS-APCI (POS.) m/z: 289 (M+H)+.
To a stirred solution of 1-(4-chlorobenzyl)-3-(4-formylphenyl)urea (2 g, 6.9 mmol, 1 equiv) in EtOH (40 mL) at 0° C. was added NaBH4 (390 mg, 10.4 mmol, 1.5 equiv). The resulting mixture was stirred at r.t. for 2 h, quenched by the addition of water (50 mL) at 0° C., and extracted twice with EtOAc (50 mL). The combined organic layers were washed twice with water (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 2.08 g of 1-(4-chlorobenzyl)-3-(4-(hydroxymethyl)phenyl)urea as a yellow solid. LCMS-APCI (POS.) m/z: 291 (M+H)+.
To a stirred solution of 1-(4-chlorobenzyl)-3-(4-(hydroxymethyl)phenyl)urea (2 g, 6.9 mmol, 1 equiv) in DCM (20 mL) at 0° C. was added SOCl2 (1.65 g, 13.9 mmol, 2 equiv). The resulting mixture was stirred at r.t. for 2 h, concentrated under reduced pressure to afford 2.2 g of 1-[4-(chloromethyl)phenyl]-3-[(4-chlorophenyl)methyl]urea as a brown solid. LCMS-APCI (POS.) m/z: 309 (M+H)+.
To a stirred mixture of 3-[(4-chlorophenyl)methyl]-1-(4-formylphenyl)urea (Intermediate 3.2, 300.00 mg, 1.039 mmol, 1.00 equiv) and 3-aminotetrahydrothiophene 1,1-dioxide (168.55 mg, 1.247 mmol, 1.2 equiv) in DCE (10 mL) at 0° C. was added STAB (440.43 mg, 2.078 mmol, 2 equiv). The resulting mixture was stirred at r.t. for overnight, concentrated under reduced pressure, and purified by C18 column chromatography, eluted with water(0.05% NH4HCO3): ACN (2:1) to afford 240 mg of 1-(4-chlorobenzyl)-3-(4-(((1,1-dioxidotetrahydrothiophen-3-yl)amino)methyl)phenyl)urea (56.63) as a white solid. LCMS-APCI (PO3.) m/z: 408 (M+H)+.
Intermediates 17.2-17.6 were prepared in a similar manner as Intermediate 17.1
To a stirred mixture of 1-(4-chlorobenzyl)-3-(4-(((1,1-dioxidotetrahydrothiophen-3-yl)(methyl)amino)methyl)phenyl)urea (120.00 mg, 0.294 mmol, 1.00 equiv) and formaldehyde (53.00 mg, 1.765 mmol, 6 equiv) in DCE (4.00 mL) at 0° C. was added STAB (124.70 mg, 0.588 mmol, 2 equiv) and AcOH (35.33 mg, 0.588 mmol, 2 equiv). After stirred at r.t. for 2 h, the above mixture was added additional formaldehyde (53.00 mg, 1.765 mmol, 6 equiv), and STAB (124.70 mg, 0.588 mmol, 2 equiv). The resulting mixture was stirred at r.t. for overnight, adjusted pH to 10 with NH3H2O(2 mL), and extracted with DCM (10 mL) twice. The combined organic layers were washed twice with water (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by Prep-HPLC with the following conditions (Column: XBridge Prep OBD C18 Column, 30*150 mm 5 um; Mobile Phase A: Water(10 MMOL/L NH4HCO3), Mobile Phase B: ACN; Flow rate:60 mL/min; Gradient:26 B to 56 B in 9 min; 254 nm;) to afford 50 mg of 1-(4-chlorobenzyl)-3-(4-(((1,1-dioxidotetrahydrothiophen-3-yl)(methyl)amino)methyl)phenyl)urea (40.28%) as a white solid. LCMS-APCI (POS.) m/z: 422 (M+H)+.
Intermediate 18.2 was prepared in a similar manner as Intermediate 18.1
To a solution of 2-amino-1-(4-bromophenyl)ethanone (100.00 g, 467.154 mmol, 1.00 equiv) in DCM (1.20 L) was added Hexamethylentetramine (85.00 g, 607.143 mmol, 1.30 equiv). The resulting mixture was stirred at r.t. for 2 h. The precipitated solids were collected by filtration and washed with CH2Cl2 (500 mL). The residue was added HCl (200.00 mL, 6 mol/L) and EtOH (1.00 L). The resulting mixture was stirred at r.t. for 3 h, leaved overnight. The precipitated solids were collected by filtration and washed with hexane (500 mL), concentrated under vacuum to afford 140 g of 2-amino-1-(4-nitrophenyl)ethanone hydrochloride (crude) as a light yellow solid. LCMS-APCI (POS.) m/z: 181 (M+H)+.
To a solution of 2-amino-1-(4-nitrophenyl)ethanone hydrochloride (140.00 g, 646.293 mmol, 1.00 equiv) in DCM (1.60 L) were added a solution of K2CO3 (179.00 g, 1295.173 mmol, 2.00 equiv) in H2O (700.00 mL) and di-tert-butyl dicarbonate (169.00 g, 774.345 mmol, 1.20 equiv). The resulting mixture was stirred at r.t. for 3 h and extracted twice with CH2Cl2 (1 L). The combined organic layers were washed twice with brine (1 L), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 176 g of tert-butyl N-[2-(4-nitrophenyl)-2-oxoethyl]carbamate (crude) as a brown oil. LCMS-APCI (POS.) m/z: 225 (M+H−56)+.
A solution of tert-butyl N-[2-(4-nitrophenyl)-2-oxoethyl] carbamate (14.00 g, 49.950 mmol, 1.00 equiv) and methyl 2-aminoacetate hydrochloride (12.61 g, 100.400 mmol, 2.01 equiv) in MeOH (200.00 mL) was stirred at r.t. for 30 min. Then the above resulting mixture at 0° C. was added NaBH3CN (6.22 g, 98.901 mmol, 1.98 equiv). The resulting mixture was stirred at 70° C. for overnight, cooled to r.t., adjusted to pH 8 with saturated NH4. H2O (aq.) and extracted twice with EtOAc (200 mL). The combined organic layers were washed twice with water (200 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 17 g (crude) of methyl 2-([2-[(tert-butoxycarbonyl)amino]-1-(4-nitrophenyl)ethyl]amino)acetate as a brown oil. LCMS-APCI (POS.) m/z: 354 (M+H)+.
To a stirred solution of methyl 2-([2-[(tert-butoxycarbonyl) amino]-1-(4-nitrophenyl)ethyl]amino)acetate (17.00 g, 48.108 mmol, 1.00 equiv) in DCM (200.00 mL) at r.t. was added TFA (40.00 mL, 188.483 mmol, 20.18 equiv). The resulting mixture was stirred at r.t. for 1 h, concentrated under reduced pressure to afford 7 g (crude) of methyl 2-[[2-amino-1-(4-nitrophenyl)ethyl]amino]acetate TFA salt as a brown oil. LCMS-APCI (POS.) m/z: 254 (M+H)+.
A solution of methyl 2-[[2-amino-1-(4-nitrophenyl) ethyl]amino]acetate TFA salt (7.00 g, 27.640 mmol, 1.00 equiv) in NH3(g) in MeOH (70.00 mL) was stirred at 70° C. for 1 h. The mixture was cooled to r.t., concentrated under reduced pressure, purified by trituration with EtOAc (100 mL). The precipitated solids were collected by filtration and washed twice with EtOAc (100 mL), concentrated under reduced pressure to afford 2 g (32.71%) of 5-(4-nitrophenyl) piperazin-2-one as a brown solid. LCMS-APCI (POS.) m/z: 222 (M+H)+.
To a stirred solution of 5-(4-nitrophenyl) piperazin-2-one (500.00 mg, 2.260 mmol, 1.00 equiv) in DCM (10.00 mL) were added (Boc)2O (1479.87 mg, 6.781 mmol, 3 equiv) and TEA (914.85 mg, 9.041 mmol, 4 equiv). The resulting mixture was stirred at r.t. for overnight, added water (10 mL) and extracted twice with DCM (10 mL). The combined organic layers were washed twice with brine (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (3:2) to afford 380 mg (52.32%) of tert-butyl 2-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate as a yellow oil. LCMS-APCI (POS.) m/z: 322 (M+H)+.
To a stirred solution of tert-butyl 2-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate (350.00 mg, 1.089 mmol, 1.00 equiv) in DMF (8.00 mL) were added CH3I (463.81 mg, 3.268 mmol, 3 equiv) and Cs2CO3 (1419.55 mg, 4.357 mmol, 4 equiv). The resulting mixture was stirred at r.t for 2 h, filtered to remove solids, the filtration was concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (5:2) to afford 230 mg (62.97%) of tert-butyl 4-methyl-2-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate as a yellow oil. LCMS-APCI (POS.) m/z: 336 (M+H)+.
To a stirred solution of 5-(4-nitrophenyl) piperazin-2-one (600.00 mg, 2.712 mmol, 1.00 equiv) in MeOH (10.00 mL) were added HCHO (813.68 mg, 27.120 mmol, 10.00 equiv), NaBH3CN (340.89 mg, 5.425 mmol, 2 equiv) and AcOH (530.00 mg, 8.826 mmol, 3.25 equiv). The resulting mixture was stirred at r.t. for 5 h, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with DCM/MeOH (20:1) to afford 800 mg of 4-methyl-5-(4-nitrophenyl)piperazin-2-one as a yellow solid LCMS-APCI (POS.) m/z: 236 (M+H)+.
To a stirred solution of 5-(4-nitrophenyl)piperazin-2-one (500.00 mg, 2.260 mmol, 1.00 equiv) in DMF (10.00 mL) at 0° C. was added NaH (361.60 mg, 9.041 mmol, 4.00 equiv, 60%). After stirred at 0° C. for 30 min, the resulting mixture at 0° C. was added CH3I (962.45 mg, 6.781 mmol, 3.00 equiv). The resulting mixture was stirred at r.t. for overnight, and purified by C18 column chromatography, eluted with water (0.05% NH4HCO3)/ACN=(4:1) to afford 390 mg (69.22%) of 1,4-dimethyl-5-(4-nitrophenyl)piperazin-2-one as a brown solid. LCMS-APCI (POS.) m/z: 250 (M+H)+.
To a solution of tert-butyl N-[2-(4-nitrophenyl)-2-oxoethyl]carbamate (20.00 g, 71.357 mmol, 1.00 equiv) in MeOH (400.00 mL) at 0° C. were added NH4OAc (14.00 g, 181.624 mmol, 2.55 equiv) and NaBH3CN (110.00 g, 1750.422 mmol, 24.53 equiv). The resulting mixture was stirred at 70° C. for overnight, cooled to r.t., adjusted to pH 8 with saturated NH3H2O, extracted twice with CH2Cl2 (1 L). The combined organic layers were washed twice with brine (1 L), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with MeOH/EtOAc (1:20) to afford 6.7 g of tert-butyl N-[2-amino-2-(4-nitrophenyl)ethyl]carbamate (33.38%) as a brown oil and 2.8 g of tert-butyl (2-hydroxy-2-(4-nitrophenyl)ethyl)carbamate as a brown solid. LCMS-APCI (POS.) m/z: 226 (M+H−56)+.
To a solution of tert-butyl N-[2-amino-2-(4-nitrophenyl)ethyl]carbamate (4.60 g, 16.371 mmol, 1.00 equiv) in DCM (40 mL) was added HCl(gas)in 1,4-dioxane (30.00 mL). The resulting mixture was stirred at r.t. for 3 h, adjusted PH to 13-14 with NaOH(aq), and extracted twice with DCM:MeOH (10:1, 50 mL). The combined organic layers were washed with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 2.3 g of 1-(4-nitrophenyl)ethane-1,2-diamine as a light brown oil. LCMS-APCI (POS.) m/z: 182 (M+H)+.
To a solution of 1-(4-nitrophenyl)ethane-1,2-diamine (2.60 g, 14.349 mmol, 1.00 equiv) in ACN (26.00 mL) were added K2CO3 (5.95 g, 43.052 mmol, 3.00 equiv) and ethyl chloroacetate (1.76 g, 14.349 mmol, 1.00 equiv). After stirred at r.t. for overnight, the resulting mixture was added EtOH (4.00 mL). The resulting mixture was stirred at 80° C. for 3 h, cooled to r.t., and filtered to remove solids. The filtration was concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with DCM/MeOH (10:1) to afford 2.2 g of 6-(4-nitrophenyl)piperazin-2-one (69.31%) as a brown solid. LCMS-APCI (POS.) m/z: 222 (M+H)+.
To a solution of 6-(4-nitrophenyl)piperazin-2-one (1.00 g, 4.520 mmol, 1.00 equiv) and TEA (914.00 mg, 9.033 mmol, 2.00 equiv) in DCM (10.00 mL) was added di-tert-butyl dicarbonate (1.18 g, 5.407 mmol, 1.20 equiv). The resulting mixture was stirred at r.t. for 2 h, and extracted twice with DCM (20 mL). The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 1.1 g of tert-butyl 3-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate (crude) as a yellow semi-solid. LCMS-APCI (POS.) m/z: 266 (M+H−56)+.
To a solution of tert-butyl 3-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate (1.10 g, 3.423 mmol, 1.00 equiv) in DMF (25.00 mL) were added Cs2CO3 (2.20 g, 6.752 mmol, 1.97 equiv) and methyl iodide (534.48 mg, 3.766 mmol, 1.10 equiv). The resulting mixture was stirred at r.t. for 2 h, extracted twice with EtOAc (30 mL). The combined organic layers were washed twice with brine (30 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc (1:4) to afford 530 mg of tert-butyl 4-methyl-3-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate (46.17%) as a yellow semi-solid. LCMS-APCI (POS.) m/z: 300 (M+H−56)+.
To a solution of tert-butyl 4-methyl-3-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate (530.00 mg, 1.580 mmol, 1.00 equiv) in DCM (8.00 mL) was added HCl(gas)in 1,4-dioxane (2.00 mL, 4 mol/L). The resulting mixture was stirred at r.t. for 2 h, concentrated under reduced pressure to afford 550 mg(crude) of 1-methyl-6-(4-nitrophenyl)piperazin-2-one hydrochloride as an orange semi-solid. LCMS-APCI (POS.) m/z: 236 (M+H)+.
To a solution of tert-butyl 4-methyl-3-(4-nitrophenyl)-5-oxopiperazine-1-carboxylate (530.00 mg, 1.580 mmol, 1.00 equiv) in DCM (8.00 mL) was added HCl(gas)in 1,4-dioxane (2.00 mL, 4 mol/L). The resulting mixture was stirred at r.t. for 2 h, concentrated under reduced pressure to afford 550 mg(crude) of 1-methyl-6-(4-nitrophenyl)piperazin-2-one hydrochloride as an orange semi-solid. LCMS-APCI (POS.) m/z: 250 (M+H)+.
To a solution of 2-fluoro-4-nitrobenzaldehyde (200.00 mg, 1.183 mmol, 1.00 equiv) in MeOH (5.00 mL) was added 1-methylpiperazin-2-one (202.00 mg, 1.770 mmol, 1.50 equiv). After stirring at r.t. for 30 min, the mixture was added AcOH (142.00 mg, 2.365 mmol, 2.00 equiv) and NaBH3CN (151.00 mg, 2.403 mmol, 2.03 equiv). The resulting mixture was stirred at r.t. for overnight, adjusted to pH 8 with NH3. H2O, concentrated under vacuum, and purified by C18 column chromatography, eluted with water(0.05% NH4HCO3)/ACN (2:1) to afford 80 mg of 4-[(2-fluoro-4-nitrophenyl)methyl]-1-methylpiperazin-2-one (25.31%) as a yellow oil. LCMS-APCI (POS.) m/z: 268 (M+H)+.
Intermediate 25.2 was prepared in a similar manner as Intermediate 25.1
To a stirred solution of PNAP (2.27 g, 13.774 mmol, 1.2 equiv) and tert-butyl N-(2-aminoethyl)-N-methylcarbamate (2.00 g, 11.478 mmol, 1.00 equiv) in MeOH(30 mL) at 0° C. were added NaBH3CN (1.44 g, 22.956 mmol, 2 equiv) and AcOH (1.38 g, 22.956 mmol, 2 equiv). The resulting mixture was stirred at r.t. for overnight, adjusted to pH 8 with saturated NH4. H2O (aq.), and extracted twice with EtOAc (50 mL). The combined organic layers were washed twice with water (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (2:3) to afford 2.8 g (75.43%) of tert-butyl N-methyl-N-(2-[[1-(4-nitrophenyl)ethyl]amino]ethyl)carbamate as a light yellow oil. LCMS-APCI (POS.) m/z: 268 (M+H−56)+.
To a stirred solution of PNAP (2.27 g, 13.774 mmol, 1.2 equiv) and tert-butyl N-(2-aminoethyl)-N-methylcarbamate (2.00 g, 11.478 mmol, 1.00 equiv) in MeOH(30 mL) at 0° C. were added NaBH3CN (1.44 g, 22.956 mmol, 2 equiv) and AcOH (1.38 g, 22.956 mmol, 2 equiv). The resulting mixture was stirred at r.t. for overnight, adjusted to pH 8 with saturated NH4. H2O (aq.), and extracted twice with EtOAc (50 mL). The combined organic layers were washed twice with water (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (2:3) to afford 2.8 g (75.43%) of tert-butyl (2-(2-chloro-N-(1-(4-nitrophenyl)ethyl)acetamido)ethyl)(methyl)carbamate as a light yellow oil. LCMS-APCI (POS.) m/z: 400 (M+H)+.
To a stirred solution of tert-butyl N-(2-[2-chloro-N-[1-(4-nitrophenyl)ethyl]acetamido]ethyl)-N-methylcarbamate (3.00 g, 7.502 mmol, 1.00 equiv) in DCM (30.00 mL) was added HCl(gas)in 1,4-dioxane (30.00 mL). The resulting mixture was stirred at r.t. for 1 h, concentrated under reduced pressure to afford 3.1 g of 2-chloro-N-[2-(methylamino)ethyl]-N-[1-(4-nitrophenyl)ethyl]acetamide hydrogen chloride as a light yellow solid. LCMS-APCI (POS.) m/z: 300 (M+H)+.
To a stirred solution of 2-chloro-N-[2-(methylamino) ethyl]-N-[1-(4-nitrophenyl)ethyl]acetamide hydrogen chloride (3.10 g, 10.342 mmol, 1.00 equiv) in ACN (50.00 mL) was added K2CO3 (7.15 g, 51.735 mmol, 5.00 equiv). The resulting mixture was stirred at 80° C. for 1 h, cooled to r.t., filtered to remove solids. The filtration was concentrated under reduced pressure to afford 1.69 g of 4-methyl-1-[1-(4-nitrophenyl) ethyl] piperazin-2-one as a yellow oil. LCMS-APCI (POS.) m/z: 264 (M+H)+.
To a stirred solution of 4-aminobenzaldehyde (2.00 g, 16.510 mmol, 1.00 equiv) in THF (40.00 mL) at 0° C. were added a solution of K2CO3 (4.56 g, 32.994 mmol, 2.00 equiv) in H2O (10.00 mL) and phenyl chloroformate (3.87 g, 24.717 mmol, 1.50 equiv) dropwise over a period of 10 min. The resulting mixture was stirred at r.t. for 1 h, extracted with EtOAc (50 mL) twice. The combined organic layers were washed twice with brine(50 mL), dried over anhydrous MgSO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (10:1) to afford 1.9 g of phenyl N-(4-formylphenyl)carbamate (84.41%) as a yellow LCMS-APCI (POS.) m/z: 242 (M+H)+.
To a stirred solution of phenyl N-(4-formylphenyl)carbamate (600.00 mg, 2.487 mmol, 1.00 equiv) in DCE (10.00 mL) were added 3-aminopyrrolidin-2-one (508.00 mg, 5.074 mmol, 2.04 equiv), STAB (1056.00 mg, 4.983 mmol, 2.00 equiv) and AcOH (299.00 mg, 4.979 mmol, 2.00 equiv). The resulting mixture was stirred at r.t. for overnight, and extracted with EtOAc(20 mL) twice. The combined organic layers were washed twice with brine(20 mL), dried over anhydrous MgSO4, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with CH2Cl2/MeOH (12:1) to afford 415 mg of phenyl N-(4-[[(2-oxopyrrolidin-3-yl)amino]methyl]phenyl)carbamate (46.87%) as an off-white foam. LCMS-APCI (POS.) m/z: 326 (M+H)+.
To a stirred solution of phenyl N-(4-[[(2-oxopyrrolidin-3-yl)amino]methyl]phenyl)carbamate (400.00 mg, 1.229 mmol, 1.00 equiv) in MeOH (8.00 mL, 197.591 mmol, 160.72 equiv) were added paraformaldehyde (369.00 mg, 4.096 mmol, 3.33 equiv) and NaBH3CN (155.00 mg, 2.467 mmol, 2.01 equiv). The resulting mixture was stirred at r.t. for overnight, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EtOAc(1:1) to afford 380 mg of phenyl (4-((methyl(2-oxopyrrolidin-3-yl)amino)methyl)phenyl)carbamate (79.65%) as an off-white solid. LCMS-APCI (POS.) m/z: 340 (M+H)+.
To a stirred solution of phenyl N-(4-[[methyl(2-oxopyrrolidin-3-yl)amino]methyl]phenyl)carbamate (100.00 mg, 0.295 mmol, 1.00 equiv) in THE (2.00 mL, 24.686 mmol, 83.78 equiv) were added TEA (149.00 mg, 1.472 mmol, 5.00 equiv) and 1-(4-chlorophenyl)methanamine (62.40 mg, 0.441 mmol, 1.50 equiv). The resulting mixture was stirred at 60° C. for overnight, concentrated under reduced pressure, purified by Prep-HPLC with the following conditions (2#SHIMADZU (HPLC-01)): Column, XBridge Prep OBD C18 Column, 30*150 mm 5 um; mobile phase A: Water(10 MMOL/L NH4HCO3+0.1% NH3. H2O) and mobile phase B: ACN (25% Phase B up to 55% in 8 min); Detector, uv 254 nm. to afford 60 mg of 3-[(4-chlorophenyl)methyl]-1-(4-[[methyl(2-oxopyrrolidin-3-yl)amino]methyl]phenyl)urea (52.64%) as a white solid. LCMS-APCI (POS.) m/z: 387 (M+H)+.
Intermediates 27.2-27.4 were prepared in a similar manner as Intermediate 27.1
To a solution of tert-butyl N-[2-(4-nitrophenyl)-2-oxoethyl]carbamate(5.00 g, 17.839 mmol, 1.00 equiv) in EtOH(100.00 mL) at 0° C. was added NaBH4(1.02 g, 26.961 mmol, 1.51 equiv). The resulting mixture was stirred at r.t. for 1 h under nitrogen atmosphere, concentrated under reduced pressure, and extracted third with EtOAc (50 mL). The combined organic layers were washed third with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (4:1) to afford 1.2 g of tert-butyl N-[2-hydroxy-2-(4-nitrophenyl)ethyl]carbamate as yellow solid. LCMS-APCI (POS.) m/z: 227 (M+H−56)+.
To a solution of tert-butyl N-[2-hydroxy-2-(4-nitrophenyl)ethyl]carbamate(2.10 g, 7.439 mmol, 1.00 equiv) in DCM(22.00 mL) was added HCl(gas)in 1,4-dioxane(5.50 mL, 96.346 mmol, 12.95 equiv). The resulting mixture was stirred at r.t. for overnight under nitrogen atmosphere, concentrated under reduced pressure to afford 1.9 g of 2-amino-1-(4-nitrophenyl)ethanol hydrochloride as an orange solid. LCMS-APCI (POS.) m/z: 183 (M+H)+.
To a solution of 2-amino-1-(4-nitrophenyl)ethanol hydrochloride(800.00 mg, 3.659 mmol, 1.00 equiv) and TEA(1.59 g, 15.713 mmol, 4.29 equiv) in THF (10.00 mL) at 0° C. was added triphosgene(309.00 mg, 1.041 mmol, 0.28 equiv). The resulting mixture was stirred at r.t. for 2 h under nitrogen atmosphere, quenched with MeOH (30 mL) at 0° C., concentrated under reduced pressure to afford 700 mg of 5-(4-nitrophenyl)-1,3-oxazolidin-2-one as a red solid. LCMS-APCI (POS.) m/z: 209 (M+H)+.
To a stirred solution of 5-(4-nitrophenyl)-1,3-oxazolidin-2-one(980.00 mg, 4.708 mmol, 1.00 equiv) in DMF(20.00 mL) were added Cs2CO3(6.13 g, 18.814 mmol, 4.00 equiv) and CH3I(736.00 mg, 5.185 mmol, 1.10 equiv). The resulting mixture was stirred at r.t. for 4 h, and extracted with EtOAc (50 mL) third. The combined organic layers were washed third with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (3:2) to afford 330 mg of 3-methyl-5-(4-nitrophenyl)-1,3-oxazolidin-2-one as yellow solid. LCMS-APCI (POS.) m/z: 223 (M+H)+.
To a solution of 3-pyridinecarboxaldehyde(5.00 g, 46.7 mmol, 1.00 equiv) and methyl acrylate(4.80 g, 56.0 mmol, 1.20 equiv) in EtOH(50 mL) were added Et3N(9.40 g, 93 mmol, 2.00 equiv) and 3-Benzyl-5-(hydroxyethyl)-4-methylthiazolium chloride(1.26 g, 4.67 mmol, 0.10 equiv) under nitrogen atmosphere. The resulting mixture was stirred at 50° C. for overnight under nitrogen atmosphere, cooled down to r.t., concentrated under reduced pressure, and extracted twice with EtOAc (100 mL). The combined organic layers were washed with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (4:1) to afford 2.19 g of methyl 4-oxo-4-(pyridin-3-yl)butanoate as a yellow solid. LCMS-APCI (POS.) m/z: 194 (M+H)+.
To a solution of methyl 4-oxo-4-(pyridin-3-yl)butanoate(1.72 g, 8.9 mmol, 1.00 equiv) and P-nitrobenzylamine(2.00 g, 10.688 mmol, 1.20 equiv) in MeOH(20.00 mL) at 0° C. were added NaBH3CN(2.80 g, 17.8 mmol, 2.00 equiv) and AcOH(2.67 g, 17.8 mmol, 2.00 equiv). The resulting mixture was stirred at 70° C. for two days, cooled down to r.t., concentrated under reduced pressure, and extracted twice with EtOAc (50 mL). The combined organic layers were washed twice with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with EtOAc to afford 1 g of 1-[(4-nitrophenyl)methyl]-5-(pyridin-3-yl)pyrrolidin-2-one as a light yellow oil. LCMS-APCI (POS.) m/z: 298 (M+H)+.
Intermediate 30.2 was prepared in a similar manner as Intermediate 30.1
To a stirred mixture of methyl 5-aminopentanoate hydrochloride(1.00 g, 0.60 mmol, 1.00 equiv) and PNAP(1.300 g, 0.79 mmol, 1.32 equiv) in DCE(10.00 mL) were added STAB(2.500 g, 1.18 mmol, 1.98 equiv) and AcOH(700 mg, 1.17 mmol, 1.95 equiv). The resulting mixture was stirred at r.t. for 2 days, adjusted to pH 8 with saturated NaHCO3 (aq.), and extracted twice with EtOAc (20 mL). The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (1:8) to afford 1 g of 1-[1-(4-nitrophenyl)ethyl]piperidin-2-one(67.52%) as a yellow solid. LCMS-APCI (POS.) m/z: 249 (M+H)+.
To a stirred solution of 2-bromo-1-(4-nitrophenyl)ethanone(8.00 g, 32.781 mmol, 1.00 equiv) and DIEA(8.47 g, 65.562 mmol, 2.00 equiv) in ACN(80.00 mL) at 0° C. were added NaI(1.47 g, 9.834 mmol, 0.30 equiv) and 2-bromo-1-(4-nitrophenyl)ethanone(8.00 g, 32.781 mmol, 1.00 equiv). The resulting mixture was stirred at r.t. for overnight under nitrogen atmosphere. The reaction was determined by LCMS. Water (200 mL) was added and the mixture was adjusted to pH 7 with HCl (aq.), and extracted three times with EtOAc (200 mL). The combined organic layers were washed with brine (200 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EtOAc (20:1) to afford 8.9 g of tert-butyl N-(2-[[2-(4-nitrophenyl)-2-oxoethyl]sulfanyl]ethyl)carbamate(79.76%) as a yellow solid. LCMS-APCI (POS.) m/z: 285 (M+H−56)+.
To a stirred mixture of tert-butyl N-(2-{[2-(4-nitrophenyl)-2-oxoethyl]sulfanyl}ethyl)carbamate (8.9 g, 26.092 mmol/L 1 equiv) in DCM (100 mL) was added m-CPBA (22.586 g, 130.419 mmol/L, 5 equiv). The resulting mixture was stirred at r.t. for overnight, added water(100 mL), and extracted three times with EtOAc (200 mL). The combined organic layers were washed with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EA (4:1) to afford 7 g of tert-butyl N-{2-[2-(4-nitrophenyl)-2-oxoethanesulfonyl]ethyl}carbamate as a light yellow solid. LCMS-APCI (POS.) m/z: 317 (M+H−56)+.
To a stirred mixture of tert-butyl N-{2-[2-(4-nitrophenyl)-2-oxoethanesulfonyl]ethyl}carbamate (7 g, 18.761 mmol/L, 1 equiv) in EtOH (80 mL) were added iron (4.2 g, 75.061 mmol/L, 4 equiv) and a solution of NH4Cl (6.9 g, 131.327 mmol/L, 7 equiv) in H2O (16 mL). The resulting mixture was stirred at r.t. for overnight under nitrogen atmosphere, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with CH2Cl2/MeOH (50:1) to afford 5.3 g of tert-butyl N-{2-[2-(4-aminophenyl)-2-oxoethanesulfonyl]ethyl}carbamate (77.69%) as a light yellow solid. LCMS-APCI (POS.) m/z: 287 (M+H−56)+.
To a solution of tert-butyl N-{2-[2-(4-aminophenyl)-2-oxoethanesulfonyl]ethyl}carbamate (3 g, 8.761 mmol, 1.00 equiv) in THE (30 mL) at 0° C. was added phenyl chloroformate (2.05 g, 13.093 mmol, 1.49 equiv) dropwise over a period of 10 min. The resulting mixture was stirred at r.t. for 2 h and then gradually warmed to 80° C. and stirred at 80° C. for overnight, cooled to r.t., concentrated under reduced pressure, purified by trituration with hexane:EA=10:1 (30 mL) and concentrated under reduced pressure to afford 3.7 g of phenyl N-[4-(2-{2-[(tert-butoxycarbonyl)amino]ethanesulfonyl}acetyl)phenyl]carbamate (91.31%) as a brown solid. LCMS-APCI (POS.) m/z: 407 (M+H−56)+.
To a solution of phenyl N-[4-(2-{2-[(tert-butoxycarbonyl)amino]ethanesulfonyl}acetyl)phenyl]carbamate (1.1 g, 2.378 mmol, 1.00 equiv) in i-PrOH (11 mL) were added 4-methoxy-benzenemethanamine (0.4 g, 2.916 mmol, 1.23 equiv) and DIEA (0.9 g, 6.964 mmol, 2.93 equiv). The resulting mixture was stirred at 80° C. for 4 h, cooled to r.t., and purified by trituration with PE:EA=8:1 (15 mL) and concentrated under reduced pressure to afford 1.38 g of tert-butylN-(2-{2-[4-({[(4-methoxyphenyl)methyl]carbamoyl}amino)phenyl]-2-oxoethanesulfonyl}ethyl)carbamate(crude) as a brown solid. LCMS-APCI (POS.) m/z: 450 (M+H−56)+.
To a solution of tert-butyl N-(2-{2-[4-({[(4-methoxyphenyl)methyl]carbamoyl}amino)phenyl]-2-oxoethanesulfonyl}ethyl)carbamate (1.28 g, 2.532 mmol, 1.00 equiv) in DCM (12 mL) was added HCl(gas)in 1,4-dioxane (3 mL, 4 mol/L). After stirred at r.t. for 2 h, the resulting mixture was concentrated under reduced pressure, added NaBH3CN (0.32 g, 5.092 mmol, 2.01 equiv) and MeOH (12 mL). The above resulting mixture was stirred at r.t. for 2 h, added water (30 mL) and extracted three times with EtOAc (20 mL). The combined organic layers were washed twice with brine (20 ml), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 1.1 g(crude) of 1-[4-(1,1-dioxo-1lambda6-thiomorpholin-3-yl)phenyl]-3-[(4-methoxyphenyl)methyl]urea as a brown solid. The crude product (500 mg) was purified by Prep-HPLC with the following conditions (2#SHIMADZU (HPLC-01)): Column, YMC-Actus Triart C18 ExRS, 30*150 mm, 5 μm; mobile phase, Water (10 mmol/L NH4HCO3+0.1% NH3. H2O) and ACN (15% ACN up to 45% in 10 min); Detector, UV254 nm, 210 nm to afford 230 mg of 1-[4-(1,1-dioxo-1lambda6-thiomorpholin-3-yl)phenyl]-3-[(4-methoxyphenyl)methyl]urea as a white solid. LCMS-APCI (POS.) m/z: 390 (M+H)+.
To a stirred solution of methyl 2-(4-nitrophenyl)acetate (5 g, 25.618 mmol, 1.00 equiv) and AIBN (0.21 g, 1.281 mmol, 0.05 equiv) in CCl4 (50 mL) were added NBS (6.84 g, 38.427 mmol, 1.5 equiv). The resulting mixture was stirred at 80° C. for overnight, cooled to r.t., added water (100 mL) and extracted twice with CH2Cl2 (50 mL). The combined organic layers were washed twice with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by C18 column chromatography, eluted with water (0.05% NH4HCO3)/ACN (1:1) to afford 4.1 g (58.39%) of methyl 2-bromo-2-(4-nitrophenyl)acetate as a yellow oil. LCMS-APCI (POS.) m/z: 274 (M+H)+. 1H NMR (300 MHz, DMSO-d6) δ 8.34-8.19 (m, 2H), 7.89-7.78 (m, 2H), 6.17 (s, 1H), 3.76 (s, 3H).
To a stirred solution of methyl 2-bromo-2-(4-nitrophenyl)acetate (3 g, 10.946 mmol, 1.00 equiv) in EtOH (30 mL) were added cysteamine hydrochloride (1.37 g, 12.041 mmol, 1.1 equiv) and K2CO3 (3.33 g, 24.081 mmol, 2.2 equiv). The resulting mixture was stirred at r.t. for overnight, added water (50 mL) and extracted twice with EA(100 mL). The combined organic layers were washed twice with brine (100 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure and purified by silica gel column chromatography, eluted with PE/EA (1:9) to afford 1.4 g 53.68% of 2-(4-nitrophenyl)thiomorpholin-3-one as a yellow solid. LCMS-APCI (POS.) m/z: 239 (M+H)+.
To a stirred solution of 2-(4-nitrophenyl)thiomorpholin-3-one (1.4 g, 5.876 mmol, 1.00 equiv) in THE (15 mL) was added BH3-Me2S (2.94 mL, 29.380 mmol, 5 equiv, 2 mol/L). The resulting mixture was stirred at 60° C. for 1 h, concentrated under reduced pressure, the residue was added HCl (15 mL, 4N) and stirred at 60° C. for additional 30 min. The mixture was adjusted to pH 8 with saturated NaHCO3 (aq.), concentrated under reduced pressure, purified by C18 column chromatography, eluted with water (0.05% NH4HCO3)/ACN (2:1) to afford 590 mg (44.77%) of 2-(4-nitrophenyl)thiomorpholine as a red oil. LCMS-APCI (POS.) m/z: 225 (M+H)+.
To a stirred solution of 2-(4-nitrophenyl)thiomorpholine (590 mg, 2.631 mmol, 1.00 equiv) and TEA (798.58 mg, 7.893 mmol, 3 equiv) in DCM(6 mL) were added (Boc)2O (1148.26 mg, 5.262 mmol, 2 equiv). The resulting mixture was stirred at r.t. for overnight, concentrated under reduced pressure, purified by silica gel column chromatography, eluted with PE/EA (3:1) to afford 400 mg (46.87%) of tert-butyl 2-(4-nitrophenyl)thiomorpholine-4-carboxylate as a yellow solid. 1H NMR (300 MHz, DMSO-d6) δ 8.33-8.17 (m, 2H), 7.77-7.66 (m, 2H), 7.71-7.54 (m, 1H), 6.92 (s, 1H), 4.34-4.09 (m, 3H), 3.20 (ddd, J=13.6, 10.1, 3.2 Hz, 1H), 2.88-2.72 (m, 1H), 2.77-2.65 (m, 1H), 2.45 (s, 1H), 1.74-1.57 (m, 1H), 1.57-1.45 (m, 1H), 1.43 (s, 2H), 1.40 (s, 8H), 1.29 (s, 2H), 1.25 (d, J=6.4 Hz, 3H), 1.15 (s, 1H), 0.99-0.76 (m, 2H).
To a stirred solution of tert-butyl 2-(4-nitrophenyl)thiomorpholine-4-carboxylate (400 mg, 1.233 mmol, 1.00 equiv) in DCM(10 mL) was added m-CPBA (1063.91 mg, 6.165 mmol, 5 equiv). The resulting mixture was stirred at r.t. for overnight, added saturated Na2SO3 (aq.) (20 mL) and extracted twice with EtOAc (20 mL). The combined organic layers were washed twice with saturated NaHCO3 (aq.) (20 mL) and brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 420 mg of tert-butyl 2-(4-nitrophenyl)thiomorpholine-4-carboxylate 1,1-dioxide as a yellow solid. LCMS-APCI (POS.) m/z: 357 (M+H)+.
To a stirred solution of tert-butyl 2-(4-nitrophenyl)-1,1-dioxo-1lambda6-thiomorpholine-4-carboxylate (420 mg, 1.178 mmol, 1.00 equiv) in i-PrOH(5 mL) was added Pd/C (10% Pd, 50% wet with water, 210 mg). The resulting mixture was stirred at r.t. for 2 h under H2, filtered to remove solids, and the filtration was concentrated under reduced pressure to afford 380 mg of tert-butyl 2-(4-aminophenyl)thiomorpholine-4-carboxylate 1,1-dioxide as a yellow solid. LCMS-APCI (POS.) m/z: 327 (M+H)+.
To a stirred solution of tert-butyl 2-(4-aminophenyl)thiomorpholine-4-carboxylate 1,1-dioxide (420 mg, 1.178 mmol, 1.00 equiv) in i-PrOH(5 mL) was added Pd/C (10% Pd, 50% wet with water, 210 mg). The resulting mixture was stirred at r.t. for 2 h under H2, filtered to remove solids, and the filtration was concentrated under reduced pressure to afford 380 mg tert-butyl 2-(4-(3-(4-methoxybenzyl)ureido)phenyl)thiomorpholine-4-carboxylate 1,1-dioxide as a yellow solid. LCMS-APCI (POS.) m/z: 327 (M+H)+.
To a stirred solution of tert-butyl 2-[4-({[(4-methoxyphenyl)methyl]carbamoyl}amino)phenyl]-1,1-dioxo-1lambda6-thiomorpholine-4-carboxylate (93 mg, 0.190 mmol, 1.00 equiv) in DCM (1 mL) was added HCl(gas)in 1,4-dioxane (0.5 mL, 4 mol/L). The resulting mixture was stirred at r.t. for 1 h, concentrated under reduced pressure, purified by C18 column chromatography, eluted with water(0.05% NH4HCO3)/ACN (4:1) to afford 45 mg (60.83%) of 3-[4-(1,1-dioxo-1lambda6-thiomorpholin-2-yl)phenyl]-1-[(4-methoxyphenyl)methyl]urea as a white solid. LCMS-APCI (POS.) m/z: 390 (M+H)+.
To a stirred mixture of methyl[(4-nitrophenyl)methyl]amine (500 mg, 3.009 mmol, 1.00 equiv) and TEA (456 mg, 4.506 mmol, 1.50 equiv) in DCM (4 mL) was added acetic anhydride (307 mg, 3.007 mmol, 1.00 equiv). The resulting mixture was stirred at r.t. for 2 h, and extracted twice with EtOAc (10 mL). The combined organic layers were washed twice with brine (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 630 mg of N-methyl-N-[(4-nitrophenyl)methyl]acetamide as a brown solid LCMS-APCI (POS.) m/z: 208 (M+H)+.
Intermediate 30.2 was prepared in a similar manner as Intermediate 30.1
To a solution of 1-[tert-butoxy(hydroxy)methyl]pyrrolidin-3-one (5 g, 26.704 mmol, 1.00 equiv) in THE (50 mL) at −78° C. was added LiHMDS (53.8 mL, 1 mol/L in THF, 2 equiv) dropwise over a period of 30 min under nitrogen atmosphere. After stirred at −78° C. for 1 h under nitrogen atmosphere, the solution at −78° C. was added 1,1,1-trifluoro-N-phenyl-N-trifluoromethanesulfonylmethanesulfonamide (10.5 g, 29.392 mmol, 1.10 equiv) under nitrogen atmosphere. The resulting mixture was stirred at −78° C. for 2 h under nitrogen atmosphere. The product was no LCMS signal, determined by TLC. The reaction at 0° C. was quenched with water(50 mL), and extracted third with EtOAc (50 mL). The combined organic layers were washed twice with brine (50 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 16 g of tert-butyl 3-(trifluoromethanesulfonyloxy)-2,5-dihydropyrrole-1-carboxylate (crude) as a brown oil.
To a solution of tert-butyl 3-(trifluoromethanesulfonyloxy)-2,5-dihydropyrrole-1-carboxylate (8 g, 12.607 mmol, 1.00 equiv) and 4-nitrophenylboronic acid (2.5 g, 14.976 mmol, 1.19 equiv) in dioxane (40 mL) at r.t. were added Pd(dppf)Cl2 (0.9 g, 1.230 mmol, 0.10 equiv) and a solution of K2CO3 (3.5 g, 25.325 mmol, 2.01 equiv) in H2O (10 mL) under nitrogen atmosphere. The resulting mixture was stirred at 80° C. for overnight under nitrogen atmosphere. The reaction was determined by LCMS. The resulting mixture was cooled to r.t., concentrated under reduced pressure, and purified by silica gel column chromatography, eluted with PE/EA (6:1) to afford 2.4 g of tert-butyl 3-(4-nitrophenyl)-2,5-dihydropyrrole-1-carboxylate (65.57%) as a yellow solid. LCMS-APCI (POS.) m/z: 234 (M+H−56)+.
To a solution of tert-butyl 3-(4-nitrophenyl)-2,5-dihydropyrrole-1-carboxylate (2.3 g, 7.922 mmol, 1.00 equiv) in methanol (20 mL) at r.t. was added Pd/C (10% Pd, 50% wet with water, 2.3 g). The resulting mixture was stirred at r.t. for overnight under hydrogen atmosphere. The reaction was determined by LCMS. The resulting mixture was filtered to remove solids, concentrated under reduced pressure to afford 1.96 g of tert-butyl 3-(4-aminophenyl)pyrrolidine-1-carboxylate as a brown. LCMS-APCI (POS.) m/z: 206 (M+H−56)+.
To a solution of tert-butyl 3-(4-aminophenyl)pyrrolidine-1-carboxylate (600 mg, 2.287 mmol, 1.00 equiv) in i-PrOH (6 mL) at r.t. were added phenyl N-[(4-chlorophenyl)methyl]carbamate (896.6 mg, 3.426 mmol, 1.50 equiv) and DIEA (590.8 mg, 4.571 mmol, 2.00 equiv). The mixture was stirred at 80° C. for overnight, cooled to r.t., and purified by silica gel column chromatography, eluted with PE/EA (2:1) to afford 450 mg of tert-butyl 3-(4-(3-(4-chlorobenzyl)ureido)phenyl)pyrrolidine-1-carboxylate (45.76%) as a yellow semi-solid. LCMS-APCI (POS.) m/z: 347 (M+H−56)+.
To a solution of tert-butyl 3-[4-({[(4-chlorophenyl)methyl]carbamoyl}amino)phenyl]pyrrolidine-1-carboxylate (400 mg, 0.930 mmol, 1.00 equiv) in DCM (4 mL) at r.t. was added TFA (1 mL). The resulting mixture was stirred at r.t. for 2 h. The reaction was determined by LCMS. The resulting mixture was adjusted pH to 10, and extracted third with CH2Cl2 (10 mL). The combined organic layers were washed twice with brine (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure to afford 300 mg of 1-[(4-chlorophenyl)methyl]-3-[4-(pyrrolidin-3-yl)phenyl]urea as a brown semi-solid. LCMS-APCI (POS.) m/z: 330 (M+H)+.
To a solution of 1-[(4-chlorophenyl)methyl]-3-[4-(pyrrolidin-3-yl)phenyl]urea (280 mg, 0.849 mmol, 1.00 equiv) and TEA (171.80 mg, 1.698 mmol, 2.00 equiv) in DCM (4 mL) at 0° C. was added MsCl (116.69 mg, 1.019 mmol, 1.2 equiv). The resulting mixture was stirred at r.t. for 4 h, and extracted third with CH2Cl2 (10 mL). The combined organic layers were washed twice with brine (10 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, purified by Prep-HPLC with the following conditions (2#SHIMADZU (HPLC-01)): Column, YMC-Actus Triart C18 ExRS, 30*150 mm, 5 μm; mobile phase, Water(10 mmol/L NH4HCO3) and ACN (30% ACN up to 60% in 8 min); Detector, UV254 nm, 210 nm to afford 230 mg of 1-[(4-chlorophenyl)methyl]-3-[4-(1-methanesulfonylpyrrolidin-3-yl)phenyl]urea (66.42%) as a brown solid. LCMS-APCI (POS.) m/z: 408 (M+H)+.
Intermediates 35.2 was prepared in a similar manner as Intermediate 35.1
To a stirred mixture of sulfanilic acid (2 g, 11.548 mmol, 1.00 equiv) and DIEA (14.91 g, 115.364 mmol, 9.99 equiv) in isopropyl alcohol (20 mL) was added phenyl N-[(4-chlorophenyl)methyl]carbamate (3.62 g, 13.832 mmol, 1.20 equiv). The resulting mixture was stirred at 80° C. for overnight, cooled to r.t., and purified by C18 column chromatography, eluted with water(0.05% NH4HCO3)/ACN (20:1) to afford 3.7 g of 4-(3-(4-chlorobenzyl)ureido)benzenesulfonic acid as a brown solid. LC/MS (APCI) m/z: 341 [M+H].
A solution of 4-({[(4-chlorophenyl)methyl]carbamoyl}amino)benzenesulfonic acid (3.5 g, 10.271 mmol, 1.00 equiv) in thionyl chloride (35 mL) was stirred at 60° C. for 30 min under nitrogen atmosphere. The mixture was cooled to r.t., and concentrated under reduced pressure to afford 3.8 g of 4-({[(4-chlorophenyl)methyl]carbamoyl}amino)benzenesulfonyl chloride as a yellow oil. LC/MS (APCI) m/z: 359 [M+H].
To a flame-dried flask was charged diisopropylamine (318 mg, 3.14 mmol, 1.1 equiv) and THE (6 mL). After cooling to −30° C., n-BuLi solution (1.32 mL, 3.13 mmol, 1.09 equiv) was added dropwise and the mixture was slowly warmed to −10° C. over 15 min. It was then cooled to −78° C. before a THF solution of 2-oxaspiro[3.5]nonan-7-one (400 mg, 2.85 mmol, 1.0 equiv) was added dropwise. The deprotonation was kept at −78° C. for 15 min and then taken out from bath for another 15 min. Then the flask was re-cooled to −78° C., a THE solution of PhNTf2 (1.12 g, 3.14 mmol, 1.1 equiv) was added slowly and the reaction was again kept for 15 min at −78° C. and 1 h outside bath. Upon completion, half-saturated NH4Cl solution was added and the aqueous phase was extracted with EtOAc (50 mL*3). The combined organic phase was dried (MgSO4), filtered, and concentrated to yield the crude vinyl triflate, which was directly used in the next step. LCMS-ESI (POS.) m/z: 273.1 (M+H)+.
To a solution of 2-oxaspiro[3.5]non-6-en-7-yl trifluoromethanesulfonate (2.85 mmol, 1.0 equiv) and (4-nitrophenyl)boronic acid (714 mg, 4.28 mmol, 1.5 equiv) in dioxane/H2O (10 mL, 3:1) was bubbled with N2 for 10 min, followed by the addition of K2CO3 (794 mg, 5.71 mmol, 2.0 equiv) and Pd(dppf)Cl2 (209 mg, 0.285 mmol, 0.1 equiv). The mixture was stirred at 75° C. for 15 h. Upon completion, half-saturated NH4Cl solution was added and the aqueous phase was extracted with EtOAc (10 mL*2). The combined organic phase was dried (MgSO4), filtered, concentrated, and purified by flash column chromatography (silica, hexanes/EtOAc=20/1->3/1) to yield the desired product as a yellowish waxy solid (512 mg, 73%). LCMS-ESI (POS.) m/z: 246.1 (M+H)+. 1H NMR (400 MHz, Chloroform-d) δ 8.16 (d, J=8.9 Hz, 2H), 7.49 (d, J=8.8 Hz, 2H), 6.24 (tt, J=3.8, 1.6 Hz, 1H), 4.53 (d, J=5.8 Hz, 2H), 4.47 (d, J=5.8 Hz, 2H), 2.61 (dt, J=4.4, 2.5 Hz, 2H), 2.52 (tq, J=6.4, 2.1 Hz, 2H), 2.10 (t, J=6.3 Hz, 2H).
To a solution 7-(4-nitrophenyl)-2-oxaspiro[3.5]non-6-ene (110 mg, 0.448, 1.0 equiv) in THE (6 mL) was added Pd/C (33 mg, 10% on wet basis, 30% mass equiv). H2 was bubbled through for 3 min. The mixture was stirred at 23° C. for 14 h under H2 atmosphere. Upon completion, solid was filtered off and the filtrate was concentrated to yield the aniline (90 mg, 93%). LCMS-ESI (POS.) m/z: 218.1 (M+H)+.
To a solution of 2-(4-aminophenyl)ethan-1-ol (1.37 g, 10.0 mmol, 1.0 equiv) in CH2Cl2 (20 mL) was added p-chlorobenzyl isocyanate (1.70 g, 10.2 mmol, 1.02 equiv) slowly at 0° C. The mixture was then stirred vigorously at 23° C. for 1 h. Upon completion, precipitation was filtered and washed by cold CH2Cl2 (10 mL) and Et2O (10 mL) to yield 1-(4-chlorobenzyl)-3-(4-(2-hydroxyethyl)phenyl)urea (2.8 g, 92%) as an off-white solid. LCMS-ESI (POS.) m/z: 305.10 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (s, 1H), 7.39 (d, J=8.4 Hz, 2H), 7.32 (d, J=8.4 Hz, 2H), 7.29 (d, J=8.4 Hz, 2H), 7.06 (d, J=8.2 Hz, 2H), 6.59 (t, J=6.0 Hz, 1H), 4.58 (s, 1H), 4.27 (d, J=6.0 Hz, 2H), 3.54 (t, J=7.2 Hz, 2H), 2.63 (t, J=7.2 Hz, 2H).
To a solution of 1-(4-chlorobenzyl)-3-(4-(2-hydroxyethyl)phenyl)urea (Intermediate 38, 500 mg, 1.64 mmol, 1.0 equiv) in THF/CH2Cl2 (20 mL, 1:1) was added PPh3 (516 mg, 1.97 mmol, 1.2 equiv) and imidazole (167 mg, 2.46 mmol, 2.0 equiv). N-bromosuccinimide (350 mg, 1.97 mmol, 1.2 equiv) was then added at 0° C. The reaction was stirred at 23° C. for 1 h. Upon completion, a mixed solution of NaHCO3 and Na2S203 was added to quench the reaction. The aqueous phase was extracted by CH2Cl2 (5 mL). The combined organic phase was washed with brine, dried (MgSO4), filtered, concentrated, and purified by column chromatography (silica, hexanes/EtOAc, 20:1->0:1) to yield 1-(4-(2-bromoethyl)phenyl)-3-(4-chlorobenzyl)urea (200 mg, 33%) as a white solid. LCMS-ESI (POS.) m/z: 367.00 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.55 (s, 1H), 7.39 (d, J=8.5 Hz, 2H), 7.33 (d, J=5.6 Hz, 2H), 7.31 (d, J=5.6 Hz, 2H), 7.13 (d, J=8.5 Hz, 2H), 6.63 (t, J=6.0 Hz, 1H), 4.28 (d, J=6.0 Hz, 2H), 3.67 (t, J=7.3 Hz, 2H), 3.03 (t, J=7.3 Hz, 2H).
To a solution of ethyl 2-(4-aminophenyl)acetate (27.46 g, 153.2 mmol) in DCM (20 mL) at 20° C. was added 4-methoxy benzyl isocyanate (25.0 g, 153.2 mmol) dropwise. The resulting mixture was stirred at room temperature for 4 hours then methanol (10 mL) was added and cooled to 0° C. After 1 hour at 0° C. the slurry was filtered providing the desired product (26.7 g, 78.0 mmol, 50.9% yield) as an off-white solid. LCMS-APCI (POS.) m/z: 343.1 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.50 (s, 1H), 7.38-7.30 (4, 2H), 7.27-7.19 (m, 2H), 7.15-7.07 (i, 2H), 6.94-6.85 (m, 2H), 6.52 (t, J=5.9 Hz, 1H), 4.22 (d, J=5.4 Hz, 2H), 4.06 (q, J=7.1 Hz, 2H), 3.73 (s, 3H), 3.55 (s, 2H), 1.17 (t, J=7.1 Hz, 3H).
Compounds in the following table were prepared in a similar manner as Compound 331, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6) δ 8.50 (s, 1 H), 7.39 (d, J =
1H NMR (400 MHz, DMSO-d6) δ 8.69 (s, 1 H), 7.52 (d, J =
1H NMR (400 MHz, DMSO-d6) δ 8.59 (s, 1 H), 8.00 (s, 1
To a room temperature solution of Intermediate 1.1 (100 mg, 0.318 mmol, 1.0 equiv), 3,3-difluoroazetidine (59 mg, 0.636 mmol, 2.0 equiv) and O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (181 mg, 0.275 mmol, 1.5 equiv) in dimethylformamide (6 mL) was added N,N-diisopropylethylamine (0.006 mL, 0.03 mmol, 0.1 equiv). The resulting mixture was stirred at room temperature for approximately 9 hours. Resultant reaction mixture was diluted with water (0.5 mL) and extracted with ethyl acetate (2×1 mL). The organic phase was dried to a viscous oil which was purified by reverse phase HPLC with a 10%-100% acetonitrile in water solution that was run over 30 minutes in a Phenomonex Gemini 5u C18 column, providing Compound 320 (37.0 mg, 0.095 mmol, 29.9% yield) as a white foam. LCMS-APCI (POS.) m/z: 390.0 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.46 (s, 1H), 7.37-7.29 (m, 2H), 7.27-7.18 (m, 2H), 7.12-7.04 (m, 2H), 6.94-6.85 (m, 2H), 6.49 (t, J=5.9 Hz, 1H), 4.61 (t, J=12.5 Hz, 2H), 4.33-4.18 (m, 4H), 3.73 (s, 3H).
Compounds in the following table were prepared in a similar manner as Compound 320, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6) δ 8.54 (d,
1H NMR (400 MHz, DMSO-d6) δ 8.54 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.55 (s,
1H NMR (400 MHz, DMSO-d6) δ 12.64 (s, 1H), 8.44 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.44 (s, 1H), 7.36-7.28 (m, 2H),
A scintillation vial was charged with cyclobutanecarboxylic acid (42 mg, 0.63 mmol, 1.0 equiv) and O-(benzotriazol-1-yl)-N,N,N′,N′-tetramethyluronium hexafluorophosphate (320 mg, 0.84 mmol, 2.0 equiv) in dimethylformamide (2 mL). N, N-diisopropylethylamine was added (37 μL, 0.21 mmol, 0.5 equiv). 1-(4-(Aminomethyl)phenyl)-3-(4-methoxybenzyl)urea (180 mg, 0.63 mmol, 1.5 equiv) was added and the resulting mixture was stirred at room temperature for approximately 30 minutes. Resultant reaction mixture was diluted with water (5 mL) and extracted with ethyl acetate (2×8 mL). The organic phase was dried to a viscous oil which was purified by reverse phase HPLC with a 100-1000 acetonitrile in water solution that was run over 30 minutes in a Phenomonex Gemini 5u C18 column, providing the desired product (38.0 mg, 0.10 mmol, 25% yield) as a white solid. LCMS-APCI (POS.) m/z: 368.15 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.45 (s, 1H), 7.33 (d, J=8.0 Hz, 2H), 7.23 (d, J=8.0 Hz, 2H), 7.08 (d, J=8.1 Hz, 2H), 6.90 (d, J=8.0 Hz, 2H), 6.48 (t, J=6.0 Hz, 1H), 4.18 (dd, J=22.4, 5.9 Hz, 4H), 3.74 (d, J=1.5 Hz, 3H), 3.04 (p, J=8.6 Hz, 1H), 2.14 (p, J=9.4 Hz, 2H), 2.02 (d, J=9.4 Hz, 2H), 1.88 (q, J=9.1 Hz, 1H), 1.76 (d, J=10.0 Hz, 2H).
Compounds in the following table were prepared in a similar manner as Compound 221, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6) δ 8.46 (s, 1H), 8.32-
1H NMR (400 MHz, DMSO-d6) δ 9.07 (t, J = 6.0
1H NMR (400 MHz, DMSO-d6) δ 8.51 (s, 1H), 8.07
1H NMR (400 MHz, DMSO-d6) δ 9.15-9.01 (m,
1H NMR (400 MHz, DMSO-d6) δ 9.07 (t, J = 5.9
1H NMR (400 MHz, DMSO-d6) δ 8.89 (d, J = 6.4
1H NMR (400 MHz, DMSO-d6) δ 8.94 (s, 1H), 8.60-
1H NMR (400 MHz, DMSO-d6) δ 8.54 (s, 1H), 8.12
1H NMR (400 MHz, DMSO-d6) δ 9.06 (d, J = 6.3
1H NMR(400 MHz, DMSO-d6) δ 9.08 (s, 1H), 8.96
1H NMR (400 MHz, DMSO-d6) δ 9.12-9.04 (m,
1H NMR (400 MHz, Methanol-d4) δ 8.51 (s, 1H),
1H NMR (400 MHz, DMSO-d6) δ 9.23 (d, J = 6.5
1H NMR (400 MHz, DMSO-d6) δ 9.23 (d, J = 6.4
1H NMR (400 MHz, DMSO-d6) δ 9.26 (d, J = 6.4
To a solution of amine and Intermediate 3.1 (100 mg, 0.35 mmol) and 2-methyl-1-(piperazin-1-yl)propan-2-ol (82 mg, 0.52 mmol) in DCE (2 mL) and pyridine (0.2 mL), preheated at 70° C. for 15 mins and subsequently cooled to room temperature, was added sodium triacetoxyborohydride (112 mg, 0.52 mmol) and the solution was stirred at 50 C for 12 h. The solution was cooled to room temperature and saturated aqueous sodium carbonate solution (3.0 mL) was added and the solution stirred vigorously for 10 mins. The organic layer was separated and the aqueous layer was extracted with 5 mL of DCM. The combined organic layer was washed with brine, dried, filtered, and concentrated. The crude was purified by reverse phase HPLC with a 10%-100% acetonitrile in water solution that was run over 30 minutes in a Phenomonex Gemini 5u C18 column, providing 1-(4-((4-(2-hydroxy-2-methylpropyl)piperazin-1-yl)methyl)phenyl)-3-(4-methoxybenzyl)urea (82 mg, 0.19 mmol) as a viscous pale yellow oil. LCMS-APCI (POS.) m/z: 427.2 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.47 (s, 1H), 7.33 (d, J=8.1 Hz, 2H), 7.23 (d, J=8.1 Hz, 2H), 7.12 (d, J=8.0 Hz, 2H), 6.90 (d, J=8.2 Hz, 2H), 6.50 (t, J=5.9 Hz, 2H), 4.22 (d, J=5.8 Hz, 2H), 3.73 (s, 3H), 3.30 (s, 5H), 2.34 (s, 4H), 2.18 (s, 2H), 1.07 (s, 6H).
Compounds in the following table were prepared in a similar manner as Compound 242, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6) δ 8.55 (s, 1H),
1H NMR (400 MHz, DMSO-d6) δ 8.44 (s, 1H),
1H NMR (400 MHz, DMSO-d6) δ 8.48 (dd, J =
1H NMR (400 MHz, DMSO-d6) δ 8.61 (s, 1H),
1H NMR (400 MHz, Methanol-d4) δ 7.34 (d, J =
1H NMR (400 MHz, Methanol-d4) δ 7.40-7.17
1H NMR (400 MHz, Methanol-d4) δ 7.35 (d, J =
1H NMR (400 MHz, Methanol-d4) δ 7.35 (d, J =
To a solution of benzaldehyde (58 mg, 0.54 mmol, 1.1 equiv) and (S)-1-(4-(1-aminoethyl)phenyl)-3-(4-chlorobenzyl)urea (150 mg, 0.49 mmol, 1.0 equiv) in dichloroethane (2 mL), stirred at room temperature for 1 hour, was added sodium triacetoxyborohydride (209 mg, 0.99 mmol, 2.0 equiv). The resulting solution was stirred at room temperature for 24 hours. A saturated aqueous sodium carbonate solution (3.0 mL) was added and the solution stirred vigorously for 10 mins. The organic layer was separated and the aqueous layer was extracted with ethyl acetate (30 mL). The combined organic layer was washed with brine, dried, filtered, and concentrated under reduced pressure. The crude was purified by reverse phase HPLC with a 10%-100% acetonitrile in water solution that was run over 30 minutes in a Phenomonex Gemini 5u C18 column, providing the desired product (17 mg, 0.04 mmol, 9% yield) as a white solid. LCMS-LCMS-ESI (POS.) m/z: 396.10 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.58 (s, 1H), 8.18 (s, 1H), 7.62 (t, J=7.6 Hz, 1H), 7.42-7.29 (m, 6H), 7.20 (t, J=8.5 Hz, 3H), 7.09 (d, J=7.6 Hz, 1H), 6.66 (s, 1H), 4.28 (d, J=5.9 Hz, 2H), 3.71 (q, J=6.6 Hz, 1H), 3.59 (s, 2H), 2.43 (s, 3H), 1.29 (d, J=6.5 Hz, 3H).
Compounds in the following table were prepared in a similar manner as Compound 40, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6) δ 8.58 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.59 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.56 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.61 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.58 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.70 (s,
1H NMR (400 MHz, DMSO-d6) δ 8.60 (s,
To a room temperature solution of N,N′-disuccinimidyl carbonate (553 mg, 2.16 mmol, 1.0 equiv) in acetonitrile (10 mL) was added 4-(methanesulfonylmethyl)aniline (0.40 g, 2.16 mmol, 1.0 equiv) followed by pyridine (0.174 mL, 2.16 mmol, 1.0 equiv) in a dropwise fashion. After 20 minutes, a solution 4-chloro benzyl amine (290 mg, 2.05 mmol, 0.95 equiv) in acetonitrile (2 mL) was added followed by N,N-diisopropylethylamine (0.752 mL, 4.32 mmol, 2.0 equiv). The resulting mixture was stirred at room temperature for approximately one hour then concentrated to dryness. Resultant mixture was diluted with ethyl acetate (50 mL) and extracted with water (2×15 mL) and brine (1×15 mL). The organic phase was dried to a viscous oil which was crystallized from dichloromethane and diethyl ether. Slurry was filtered to afford N-[(4-chlorophenyl)methyl]({4-[(methylsulfonyl)methyl]phenyl}amino)carboxamide as a white solid (362 mg, 1.03 mmol, 50% yield). LCMS-APCI (POS.) m/z: 353.0 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.72 (s, 1H), 7.47-7.34 (m, 4H), 7.38-7.28 (m, 2H), 7.31-7.21 (m, 2H), 6.70 (t, J=6.1 Hz, 1H), 4.36 (s, 2H), 4.29 (d, J=6.0 Hz, 2H), 2.85 (s, 3H).
Compounds in the following table were prepared in a similar manner as Compound 136, using the intermediates and reagents as listed.
2,2,2-Trifluoroacetic acid (1 mL) was added to a solution of tert-butyl (2R)-4-{2-[4-({[(4-chlorophenyl)methyl]amino}carbonylamino)phenyl]acetyl}-2-(hydroxymethyl)piperazinecarboxylate (150 mg, 0.30 mmol, 1.0 equiv) in methylene chloride (5 mL), dropwise. The resulting mixture was stirred at room temperature for approximately 3 hours. Resultant reaction mixture was dried and the resulting residue was purified by reverse phase HPLC with a 10%-100% acetonitrile in water solution that was run over 30 minutes in a Phenomonex Gemini 5u C18 column, providing the desired product (92.0 mg, 0.23 mmol, 77% yield) as a white solid. LCMS-ESI (POS.) m/z: 401.10 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.87 (s, 1H), 8.59 (s, 1H), 7.34 (t, J=7.4 Hz, 3H), 7.16 (t, J=8.7 Hz, 2H), 7.08 (d, J=8.1 Hz, 2H), 6.68 (t, J=6.0 Hz, 1H), 5.55-5.41 (m, 1H), 4.44-4.32 (m, 1H), 4.27 (d, J=5.9 Hz, 2H), 4.17-3.93 (m, 2H), 3.78-3.57 (m, 3H), 3.53 (dd, J=11.4, 5.6 Hz, 1H), 3.18 (d, J=3.8 Hz, 2H), 3.14 (s, 1H), 2.98-2.68 (m, 2H).
Compounds in the following table were prepared in a similar manner as Compound 181, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6, 1:1 ratio of
1H NMR (400 MHz, DMSO-d6, 1:1 ratio of
To a stirred solution of 4-(1-methanesulfonylethyl)aniline (300.00 mg, 1.505 mmol, 1.00 equiv) and phenyl N-[(4-chlorophenyl)methyl]carbamate (472.80 mg, 1.807 mmol, 1.20 equiv) in acetonitrile/THF (4 mL/2 mL) was added TEA (457.02 mg, 4.516 mmol, 3.00 equiv) at r.t. The resulting mixture was stirred at 60° C. for overnight, then concentrated under reduced pressure, purified by Prep-HPLC with the following conditions (Column: XBridge Prep OBD C18 Column 30×150 mm 5 um; Mobile Phase A: Water(10 MMOL/L NH4HCO3), Mobile Phase B: ACN; Flow rate: 60 mL/min; Gradient: 35% B to 35% B in 10 min; 254 nm; Rt: 9.68 min) to afford 3-[(4-chlorophenyl)methyl]-1-[4-(1-methanesulfonylethyl)phenyl]urea (90 mg, 16.30%) as a white solid. LRMS (ES) m/z 367[M+H].
The racemic compound 3-[(4-chlorophenyl)methyl]-1-[4-(1-methanesulfonylethyl)phenyl]urea(90 mg, 0.257 mmol, 1.00 equiv) was separated by Chiral-HPLC with the following conditions(Column: CHIRALPAK IA, 2*25 cm, 5 um; Mobile Phase A: Hex(8 mmol/L NH3.MeOH)-HPLC, Mobile Phase B: EtOH-HPLC; Flow rate: 16 mL/min; Gradient: 50 B to 50 B in 20 min; 220/254 nm) to afford 33.9 mg 3-[(4-chlorophenyl)methyl]-1-[4-[(1S)-1-methanesulfonylethyl]phenyl]urea and 39.9 mg 3-[(4-chlorophenyl)methyl]-1-[4-[(1R)-1-methanesulfonylethyl]phenyl]urea as white solids. The chiral analytical data shows retention times of (RT: 10.53 min) and (RT: 15.92 min) for the first and second peak respectively. The first peak was arbitrarily assigned as (S)-1-(4-chlorobenzyl)-3-(4-(1-(methylsulfonyl)ethyl)phenyl)urea and second peak was assigned as (R)-1-(4-chlorobenzyl)-3-(4-(1-(methylsulfonyl)ethyl)phenyl)urea. Enantiomer 1: LRMS (ES) m/z 367 [M+H]. 1H NMR (400 MHz, DMSO-d6) δ 8.74 (s, 1H), 7.41 (dd, J=12.3, 8.2 Hz, 4H), 7.31 (t, J=8.1 Hz, 4H), 6.71 (t, J=6.0 Hz, 1H), 4.42 (q, J=7.1 Hz, 1H), 4.29 (d, J=5.9 Hz, 2H), 2.77 (s, 3H), 1.59 (d, J=7.1 Hz, 3H). Enantiomer 2: LRMS (ES) m/z 367[M+H]. 1H NMR (400 MHz, DMSO-d6) δ 8.74 (s, 1H), 7.46-7.36 (m, 4H), 7.31 (t, J=8.5 Hz, 4H), 6.71 (t, J=6.0 Hz, 1H), 4.42 (q, J=7.1 Hz, 1H), 4.29 (d, J=5.9 Hz, 2H), 2.77 (s, 3H), 1.59 (d, J=7.1 Hz, 3H).
Compounds in the following table were prepared in a similar manner as Compounds 86 and 127, using the intermediates and reagents as listed.
1HNMR (400 MHz, DMSO-d6) δ 8.55 (s, 1H),
1HNMR (400 MHz, DMSO-d6) δ 8.45 (s, 1H),
1H NMR (400 MHz, DMSO-d6) δ 8.61 (s, 1H),
1H NMR (400 MHz, DMSO-d6) δ 8.62 (s, 1H),
Methanesulfonyl chloride (21 μL, 0.269 mmol, 1.3 equiv) was added to a stirring solution of 1-(4-(aminomethyl)phenyl)-3-(4-chlorobenzyl)urea hydrochloride (60 mg, 0.21 mmol, 1 equiv) and diisopropylethylamine (72 μL, 0.41 mmol, 2 equiv) in DMF (2 mL) at rt. After 1 h, the product was isolated by reverse phase HPLC (5->95% MeCN/H2O w/0.1% formic acid) as a white solid (20 mg, 26%). LCMS-ESI (POS.) m/z: 368.0 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 8.60 (s, 1H), 7.44 (t, J=6.2 Hz, 1H), 7.38 (t, J=8.3 Hz, 4H), 7.32 (d, J=8.4 Hz, 2H), 7.19 (d, J=8.5 Hz, 2H), 6.65 (t, J=6.1 Hz, 1H), 4.28 (d, J=5.9 Hz, 2H), 4.05 (d, J=6.3 Hz, 2H), 2.81 (s, 3H).
Compounds in the following table were prepared in a similar manner as Compound 475, using the intermediates and reagents as listed.
1H NMR (400 MHz, DMSO-d6) δ: 8.60 (s, 1H), 7.74
To a stirred solution of tert-butyl 3-oxopiperazine-1-carboxylate (162.00 mg, 0.809 mmol, 1.00 equiv) in DMF (3.00 mL) at 0° C. was added NaH (38.83 mg, 0.971 mmol, 1.20 equiv, 60%). After stirred at 0° C. for 15 min, the resulting mixture at 0° C. was added 1-[4-(chloromethyl)phenyl]-3-[(4-chlorophenyl)methyl]urea (300.18 mg, 0.971 mmol, 1.20 equiv). The resulting mixture was stirred at r.t. for 2 h, quenched by MeOH (2 mL) at 0° C., concentrated under reduced pressure to afford 300 mg of tert-butyl 4-[[4-([[(4-chlorophenyl)methyl]carbamoyl]amino)phenyl]methyl]-3-oxopiperazine-1-carboxylate as a yellow solid. LCMS-ESI (POS.) m/z: 473 (M+H)+.
Compounds in the following table were prepared in a similar manner as tert-butyl 4-(4-(3-(4-chlorobenzyl)ureido)benzyl)-3-oxopiperazine-1-carboxylate, using the intermediates and reagents as listed.
The racemic compound 1-[(4-chlorophenyl) methyl]-3-[4-[(3-methyl-2-oxopyrrolidin-1-yl) methyl]phenyl]urea (70 mg, 0.188 mmol, 1 equiv) was separated by Prep-Chiral-HPLC with the following conditions (Column: CHIRALPAK IF-2, 2*25 cm, 5 um; Mobile Phase A: Hex (8 mmol/L NH3.MeOH)-HPLC, Mobile Phase B: EtOH-HPLC; Flow rate:20 mL/min; Gradient:20 B to 20 B in 35 min; Injection Volume: 0.8 ml; Number Of Runs:6;) to afford 15.6 mg of (S)-1-(4-chlorobenzyl)-3-(4-((3-methyl-2-oxopyrrolidin-1-yl)methyl)phenyl)urea and 19.1 mg of (R)-1-(4-chlorobenzyl)-3-(4-((3-methyl-2-oxopyrrolidin-1-yl)methyl)phenyl)urea as white solids.
N.B. Absolute stereochemistry assigned randomly and not confirmed.
(S)-1-(4-chlorobenzyl)-3-(4-((3-methyl-2-oxopyrrolidin-1-yl)methyl)phenyl)urea. LCMS-ESI (POS.) m/z: 372 (M+H)+. 1H NMR (300 MHz, DMSO-d6) δ: 8.57 (s, 1H), 7.43-7.26 (m, 5H), 7.05 (d, J=8.4 Hz, 2H), 6.62 (t, J=6.0 Hz, 1H), 4.27 (d, J=5.3 Hz, 4H), 3.11 (td, J=6.4, 3.0 Hz, 2H), 2.39 (q, J=8.6 Hz, 1H), 1.51 (dt, J=12.5, 8.6 Hz, 1H), 1.23 (s, 2H), 1.07 (d, J=7.1 Hz, 3H).
(R)-1-(4-chlorobenzyl)-3-(4-((3-methyl-2-oxopyrrolidin-1-yl)methyl)phenyl)urea. LCMS-ESI (POS.) m/z: 372 (M+H)+. 1H NMR (300 MHz, DMSO-d6) δ: 8.59 (s, 1H), 7.43-7.26 (m, 5H), 7.05 (d, J=8.4 Hz, 2H), 6.64 (t, J=6.0 Hz, 1H), 4.27 (d, J=5.3 Hz, 4H), 3.38 (s, 1H), 3.16-3.06 (m, 2H), 2.39 (q, J=8.3 Hz, 1H), 1.49 (dd, J=12.4, 8.6 Hz, 1H), 1.23 (s, 1H), 1.07 (d, J=7.2 Hz, 3H).
Compounds in the following table were prepared in a similar manner as Compound 379 and Compound 380, using the intermediates and reagents as listed.
1H NMR (300 MHz, MeOD-d4) δ 7.49-7.42 (m, 2H),
1H NMR (300 MHz, MeOD-d4) δ 7.46 (d, J = 8.6 Hz,
To a stirred solution of tert-butyl 4-(4-(3-(4-methoxybenzyl)ureido)benzyl)-3-oxopiperazine-1-carboxylate (376 mg, 0.802 mmol, 1 equiv) in DCM was added TFA (1 mL). The resulting mixture was stirred at r.t. for 1 h, concentrated under reduced pressure, and purified by C18 column chromatography, eluted with water(0.05% NH4HCO3)/ACN (2:1) to give a crude product, which was purified by Prep-HPLC with the following conditions (2#SHIMADZU (HPLC-01)): Column, XBridge Prep OBD C18 Column, 30×150 mm 5 um; mobile phase, Water(10 MMOL/L NH4HCO3) and ACN (30% Phase B up to 60% in 8 min); Detector, uv254 nm to afford 60 mg of 1-(4-methoxybenzyl)-3-(4-((2-oxopiperazin-1-yl)methyl)phenyl)urea (20.3 mg, 20%) as an off-white solid. LCMS-APCI (POS.) m/z: 369 (M+H)+.
To a solution of 3-[(4-methoxyphenyl)methyl]-1-[4-[(2-oxopiperazin-1-yl)methyl]phenyl]urea (35.00 mg, 0.095 mmol, 1.00 equiv) in DCE (3 mL) was added formaldehyde (68.40 mg, 0.760 mmol, 8.00 equiv). After stirred at r.t. for 10 min, the mixture was added STAB (80.53 mg, 0.380 mmol, 4 equiv) and AcOH (22.82 mg, 0.380 mmol, 4 equiv). The resulting mixture was stirred at r.t. for 3 h. Water (20 mL) was added and the mixture was extracted twice with EtOAc (20 mL). The combined organic layers were washed twice with brine (20 mL), dried over anhydrous Na2SO4, concentrated under reduced pressure, and purified by Prep-HPLC with the following conditions (2#SHIMADZU (HPLC-01)): Column, XBridge Prep OBD C18 Column, 30*150 mm 5 um; mobile phase, Water (10 mmol/L NH4HCO3) and ACN (18% Phase B up to 36% in 8 min); Detector, UV254 nm to afford 6.3 mg of 1-(4-methoxybenzyl)-3-(4-((4-methyl-2-oxopiperazin-1-yl)methyl)phenyl)urea (17%) as a white solid. LCMS-APCI (POS.) m/z: 383 (M+H)+. 1H NMR (400 MHz, Methanol-d4) δ 7.36 (d, J=8.5 Hz, 2H), 7.26 (d, J=8.7 Hz, 2H), 7.20 (d, J=8.5 Hz, 2H), 6.90 (d, J=8.7 Hz, 2H), 4.55 (s, 2H), 4.32 (s, 2H), 3.79 (s, 3H), 3.32-3.28 (m, 2H), 3.17 (s, 2H), 2.72-2.62 (m, 2H), 2.34 (s, 3H).
To a stirred mixture of 4-({[(4-chlorophenyl)methyl]carbamoyl}amino)benzenesulfonyl chloride (100 mg, 0.278 mmol, 1.00 equiv) and TEA (84.6 mg, 0.836 mmol, 3.00 equiv) in DCM (1 mL) was added 8-oxa-3-azabicyclo[3.2.1]octane hydrochloride (41.6 mg, 0.278 mmol, 1.00 equiv). The resulting mixture was stirred at r.t. for 2 h, concentrated under reduced pressure, purified by Prep-HPLC with the following conditions (Column, XBridge Prep OBD C18 Column, 30*150 mm, 5 μm; mobile phase, water(10 mmol/L NH4HCO3+0.1% NH3. H2O) and ACN (25% ACN up to 55% in 8 m)) to afford 20.8 mg of 1-(4-((8-oxa-3-azabicyclo[3.2.1]octan-3-yl)sulfonyl)phenyl)-3-(4-chlorobenzyl)urea (17.14%) as a white solid. LCMS-APCI (POS.) m/z: 436 (M+H)+. 1H NMR (300 MHz, DMSO-d6) δ 9.17 (s, 11H), 7.77-7.51 (m, 4H), 7.46-7.14 (m, 4H), 6.87 (t, =6.0 Hz, 1H), 4.32 (t, J=5.0 Hz, 4H), 3.22 (d, J=11.1 Hz, 2H), 2.54 (s, 2H), 1.93-1.56 (m, 4H).
Compounds in the following table were prepared in a similar manner as Compound 526, using the intermediates and reagents as listed.
To a solution of 1-(4-chlorobenzyl)-3-(4-(2-hydroxyethyl)phenyl)urea (Intermediate 38, 65 mg, 0.213 mmol, 1.0 equiv) in THE (1 mL) was added PPh3 (112 mg, 0.427 mmol, 2.0 equiv), pyridin-4-ol (41 mg, 0.427 mmol, 2.0 equiv) and diisopropyl azodicarboxylate (86 mg, 0.427 mmol, 2.0 equiv) sequentially. The reaction was stirred at 23° C. for 24 h. LC-MS showed generally half conversion. Then the reaction was concentrated and purified by preparative HPLC (H2O (0.1% HCO2H)/MeCN (0.1% HCO2H) to yield 1-(4-chlorobenzyl)-3-(4-(2-(pyridin-4-yloxy)ethyl)phenyl)urea (7 mg, 9). LCMS-ESI (Pa t.) m/z: 382.10 (M+H)+. 1H NM/R (400 MHz, DMSO-d6) δ 8.53 (s, 1H), 8.36 (d, J=5.5 Hz, 2H), 7.39 (d, J=8.5 Hz, 2H), 7.36-7.29 (m, 4H), 7.17 (d, J=8.4 Hz, 2H), 6.96 (d, J=5.6 Hz, 2H), 6.61 (t, J=6.0 Hz, 1H), 4.28 (d, J=6.0 Hz, 2H), 4.23 (t, J=6.9 Hz, 2H), 2.96 (t, J=6.9 Hz, 2H).
Compounds in the following table were prepared in a similar manner as Compound 485, using the intermediates and reagents as listed.
To a vial charged with 4-(3-(4-methoxybenzyl)ureido)benzoic acid (Intermediate 1.4, 60 mg, 0.200 mmol, 1.0 equiv), (R)-1-(3-methylpyridin-2-yl)ethan-1-amine (33 mg, 0.240 mmol, 1.2 equiv), 3-(ethyliminomethyleneamino)-N,N-dimethyl-propan-1-amine (EDC) HCl salt (46 mg, 0.240 mmol, 1.2 equiv), and 4-DMAP (12 mg, 0.100 mmol, 0.5 equiv) was added DMF (1 mL) and diisopropylethylamine (76 mg, 0.600 mmol, 3.0 equiv). The reaction was stirred at 23° C. for 24 h. Then the crude mixture was directly subjected to preparative HPLC (H2O (0.1% HCO2H)/MeCN (0.1% HCO2H) to yield (R)-4-(3-(4-methoxybenzyl)ureido)-N-(1-(3-methylpyridin-2-yl)ethyl)benzamide (22 mg, 22%) as a white solid.
Compounds in the following table were prepared in a similar manner as Compound 513, using the intermediates and reagents as listed.
To a solution of the 1-(4-(2-bromoethyl)phenyl)-3-(4-chlorobenzyl)urea (Intermediate 41, 30 mg, 0.082 mmol, 1.0 equiv) in DMF (1 mL) was added sodium pyridine-3-sulfinate (20 mg, 0.122 mmol, 1.5 equiv) as solid. The mixture was stirred at 60° C. for 22 h. Then the reaction was directly subjected to preparative HPLC (H2O (0.1% HCO2H)/MeCN (0.1% HCO2H) to yield 1-(4-chlorobenzyl)-3-(4-(2-(pyridin-3-ylsulfonyl)ethyl)phenyl)urea (8 mg, 23%) as a white solid. LCMS-ESI (POS.) m/z: 430.1 (M+H)+. 1H NMR (400 MHz, DMSO-d6) δ 9.05 (d, J=2.3 Hz, 1H), 8.90 (dd, J=4.9, 1.6 Hz, 1H), 8.52 (s, 1H), 8.30 (dt, J=8.1, 2.0 Hz, 1H), 7.68 (dd, J=8.0, 4.8 Hz, 1H), 7.38 (d, J=8.5 Hz, 2H), 7.31 (d, J=8.5 Hz, 2H), 7.26 (d, J=8.5 Hz, 2H), 7.05 (d, J=8.5 Hz, 2H), 6.61 (t, J=5.9 Hz, 1H), 4.27 (t, J=5.5 Hz, 2H), 3.77-3.68 (m, 2H), 2.89-2.79 (m, 2H).
A. Human Recombinant Enzyme Assay
Compounds described herein were assayed for their ability to stimulate the synthesis of nicotinamide mononucleotide (NMN) by the enzyme NAMPT. The human recombinant enzyme assay measures the activation of the enzyme activity by compounds using recombinant enzyme and substrates in a buffered cell-free system. The assay conditions closely mimic cellular environments. Dose responses were measured using an assay to detect the formation of nicotinamide mono-nucleotide. All experiments were performed in the 384-well format. Generally, 0.5 μL of DMSO containing varying concentrations of the test compound was mixed with 10 μL of the enzyme reagent solution. Enzyme reactions were initiated with the addition of 10 μL of a solution containing the substrates. The final assay conditions were as follows: 6 nM human NAMPT, 2.5 mM ATP, 20 μM PRPP and 150 μM nicotinamide in 50 mM HEPES, pH 7.2, 1 mM DTT, 1 mM CHAPS 50 mM NaCl, 100 mM MgCl2. Following an incubation of 60 min at ambient temperature, 10 μL of 20% acetophenone in DMSO was added, followed by 10 μL of 2 M KOH and 40 μL of formic acid. The plates were read for fluorescence (Excitation/Emission=355 nm/460 nm) using an EnVision plate reader after 40 mins of incubation at ambient temperature. The potency measurements for compounds, are quantified and represented as AC1.4 (the concentration of compounds that generates 40% higher activity over basal) and EC50 (concentration of the compound that gives half-maximal activation). Comparative compounds A, B, C, and D were also tested, and the data are presented in Table A. For the AC1.4 values, compounds designated with the letter “A” have AC1.4 values that are less than 0.5 μM; compounds designated with the letter “B” have AC1.4 values that are between 0.5 μM and 2.5 μM; and compounds designated with the letter “C” have AC1.4 values that are greater than 2.5 μM. For example, compounds 36 and 242 have AC1.4 values of 0.15 and 0.42, respectively, and are designated as “A” in Table A, and compound 167 has an AC1.4 value of 0.78 and is designated as “B.” As shown in Table A, comparator compound A, which has an unsubstituted phenyl ring (i.e., wherein R1 is hydrogen) is five to ten times less potent than compounds with a halo or methoxy substituent at the R1 position, as measured by AC1.4.
B. Cellular NAD+ Modulation Assay.
The compounds described herein were also assayed for their ability to stimulate the endogenous NAMPT in a native cellular environment in the cellular NAD+ modulation assay, which measures the ability of the compound to modulate cellular NAD levels. Increased levels of NAD are expected by compounds that permeate the cells and activate the catalytic activity of the endogenous NAMPT.
Neuroblastoma SH-SY5Y cells were grown in 1:1 mixture of Eagle's Minimum Essential Medium and F12 Medium, along with 10% fetal bovine serum, in a humidified incubator with an atmosphere of 95% air and 5% C02 at 37° C. The assays were initiated by plating 20 μL of SH-SY5Y cells in culture medium with 0.1% fetal bovine serum, at a density of 5000 cells per well to a 384-well Corning™ BioCoat™ Poly-D-Lysine Multiwell Plates. The plates were incubated in the 37° C. incubators for a period of 5 hours. Compounds in DMSO were added to the plates in a volume of 120 nL using the Labcyte Echo Liquid Handlers. 5 μL of a 1.5 uM Doxorubicin solution in assay medium is added to each well. The plates are then incubated for 40 hours. 30 μL of a readout-solution containing 0.2 U/mL Diaphorase enzyme, 40 uM resazurin, 10 uM FMN, 0.8 U/mL Alcohol dehydrogenase, 3% ethanol, 0.4 mg/mL bovine serum albumin, 0.2% Triton X-100 in 100 mM Tris-HCl, 30 mM EDTA, pH 8.4. The plates were read for fluorescence (Excitation/Emission=540 nm/590 nm) using an EnVision plate reader after 60 mins of incubation at ambient temperature. Table B shows the AC0.3, delta recovery, and EC50 data for the tested compounds Comparative compounds A, B, C, and D were also tested, and the data are presented in Table B. For the AC0.3 values, compounds designated with the letter “A” have AC0.3 values that are less than 0.5 μM; compounds designated with the letter “B” have AC0.3 values that are between 0.5 μM and 2.5 μM; and compounds designated with the letter “C” have AC0.3 values that are greater than 2.5 μM. For example, compound 36 has an AC0.3 value of 0.15 and is designated as “A” in Table B, and compounds 167 and 242 have AC0.3 values of 1.2 and 0.86, respectively, and are designated as “B.”
Caco-2 permeability was assessed for compounds described herein. As discussed previously, the Caco-2 permeability assay is commonly used to investigate human intestinal permeability and drug efflux and is an accurate predictor of in vivo absorption. Caco-2 cells (clone C2BBe1) were obtained from American Type Culture Collection (Manassas, Va.). Cell monolayers were grown to confluence on collagen-coated, microporous membranes in 12-well assay plates. Details of the plates and their certification are shown below. The permeability assay buffer was Hanks' balanced salt solution containing 10 mM HEPES and 15 mM glucose at a pH of 7.4. The buffer in the receiver chamber also contained 1% bovine serum albumin. The dosing solution concentration was 5 μM for the test article in the assay buffer. Cell monolayers were dosed on the apical side (A-to-B) or basolateral side (B-to-A) and incubated at 37° C. with 5% CO2 in a humidified incubator. Samples were taken from the donor and receiver chambers at 120 minutes. Each determination was performed in duplicate. The flux of co-dosed lucifer yellow was also measured for each monolayer to ensure no damage was inflicted to the cell monolayers during the flux period. All samples were assayed by LC-MS/MS (Waters ACQUITY UPLC® BEH Phenyl 30×2.1 mm, 1.7 μm) using electrospray ionization, using ammonium formate as the buffer (25 mM, pH 3.5).
The apparent permeability (Papp) and percent recovery were calculated as follows:
P
app=(dCr/dt)×Vr/(A×CA) (1)
Percent Recovery=100×((Vr×Crfinal)+(Vd×Cdfinal))/(Vd×CN) (2)
Data for compounds tested are presented in Table C. Comparative compounds B, C, and D were also tested. As shown in the provided data, tested compounds having a halo or methoxy substituent at the R1 position demonstrate improved permeability compared with Comparator compounds B, C, and D.
In vivo pharmacokinetics (PK) was assessed for compounds described herein in male C57BL/6 mice and male Sprague Dawley rats.
Pharmacokinetics of compounds were determined in male C57BL/6 mice following a bolus IV dose at 1.0 mg/kg and a single PO dose at 1 mg/kg. Fifteen mice were used for each group in a sparse sampling design. Blood samples were taken up to 24 hr postdose. Concentrations in plasma were determined using a LC/MS/MS method.
Male C57BL/6 mice were obtained from Charles River Laboratories (Hollister, Calif.). Animals were housed in polycarbonate cages in unidirectional air flow rooms on a 12 hr light/dark cycle. Animals were acclimated a minimum of three days prior to PK studies. Food (Lab Diet 5001 rodent diet) and water were available ad libitum during the acclimation period and during the study, except during study procedures. All in vivo experiments were performed in compliance with the IACUC protocol, appropriate guidelines of the test facility, and animal welfare regulations.
A group of 15 mice received 1.0 mg/kg of compound intravenously via injection into the tail vein. The IV dose volume was 5 mL/kg. The IV dose solution was prepared in 10% DMA/20% PG/70% HPβCD solution (40% w/v aqueous HPβCD) at a concentration of 0.2 mg/mL. Another group of 15 mice received the compounds by oral gavage at 1 mg/kg. The oral dose volume was 5 mL/kg. The oral dosing suspension was prepared by suspending the compound in 0.5% HPMC/0.1% Tween 80 in water at a concentration 0.2 mg/mL. Concentrations of IV and PO doses were measured at the end of the study. Pharmacokinetic parameters were calculated using the nominal dose values if the measured values were within 20% of the nominal values.
Sparse blood samples were collected from groups of three mice via retro-orbital bleeding, placed into a K2EDTA microtainer tube and maintained on ice until centrifugation to obtain plasma. Each designated group of mice were bled at two-time points. The time points were predose (PO only), 5 (IV only), 15, 30 min, 1, 2, 4, 6, 8 and 24 hr postdose. Blood samples were centrifuged for 5 min at 14,000 rpm (20,800 g) in a refrigerated Eppendorf Model 5804 R centrifuge and the collected plasma was transferred to an Eppendorf™ tube and stored at −80° C. until analysis.
Plasma samples were analyzed for compound concentrations using an LC/MS/MS method as described below. Briefly, a 50 μL aliquot of each plasma sample was mixed with 100 μL of acetonitrile that contained compound as the internal standard (IS). The mixture was vortexed and centrifuged. The supernatant was transferred and filtered through a membrane (Pall Corporation, AcroPrep 96-well filter plate, 0.2 μm hydrophilic polypropylene membrane). Ten μL of the resulting solution was injected onto a reverse-phase C18 column and the resultant peaks detected on a SCIEX API 4000 LC/MS/MS equipped with a turbo ionspray ionization source.
Following a bolus IV dose at 1.0 mg/kg, the mean plasma clearance (CL), volume of distribution (Vss), area under the curve (AUC) and elimination half-life (t½) was calculated or measured. Following a single oral dose at 1.0 mg/kg, the maximal plasma concentration (Cmax) and AUC∞ was measured or calculated. Oral bioavailability (% F) was calculated (% F=AUC(oral)/AUC(iv)×100).
Tables D-1 and D-2 show the PK parameters of compounds in male C57BL/6 mice following an IV dose of the compounds at 1.0 mg/kg, wherein AUClast stands for the area under the concentration-time curve from hour 0 to the last measurable concentration, AUC∞ stands for the area under the concentration-time curve extrapolated to infinity, CL is the apparent plasma clearance, Vss is the apparent volume of distribution at steady state, and t½ is the time to maximum observed concentration.
Tables E-1 and E-2 show the PK parameters of compounds in male C57BL/6 mice following an oral dose of the compounds at 1.0 mg/kg, wherein Cmax, is the maximum observed concentration, tmax is the time to maximum observed concentration, AUClast stands for the area under the concentration-time curve from hour 0 to the last measurable concentration, AUC∞ stands for the area under the concentration-time curve extrapolated to infinity, % F is the percentage of oral bioavailability, and t½ is the time to maximum observed concentration.
Pharmacokinetics of compounds was studied in male Sprague Dawley rats following IV and PO administration. Three rats were used in each dose group. Serial blood samples were taken up to 24 hours post-dose. Concentrations of compound in plasma were determined using a LC/MS/MS method. The mean calculated pharmacokinetic parameters are summarized in Tables F and G.
Male Sprague Dawley rats with surgically implanted cannula at the jugular vein were obtained from Charles River Laboratories (Hollister, Calif.). All cannulae were locked using heparin dextrose solution. Animals were housed individually in polycarbonate cages in unidirectional air flow rooms on a 12 h light/dark cycle. Animals were acclimated a minimum of three days prior to PK studies. Food (Lab Diet 5001 rodent diet) and water were available ad libitum during the acclimation period and during the study, except during study procedures. All in vivo experiments were performed in compliance with the IACUC protocol, appropriate guidelines of the test facility (Cytokinetics, Inc), and animal welfare regulations.
Three rats were dosed IV via a bolus injection via the jugular vein cannula. Three rats were dosed by oral gavage. Vehicles for dosing were: (Vehicle A for IV studies) 10% DMA: 50% PG: 40% aqueous HPβCD; (Vehicle B for PO studies) was 0.5% HPMC/0.1% Tween 80. Blood samples were collected in Microtainer™ plasma tubes (K3EDTA) from the jugular vein cannula at predose, 5 (IV only), 15, 30 min, 1, 2, 4, 6, and 24 h post-dose. Blood volumes were replaced with an equal amount of sterile 0.9% saline. Blood samples were centrifuged for 5 min at 14,000 rpm (20,800 g) in a refrigerated Eppendorf™ Model 5804 R centrifuge and the collected plasma was transferred to an Eppendorf™ tube and stored at −80° C. for subsequent analysis.
The IV dose solution was prepared in 10% DMA/50% PEG400/40% HPβCD solution (40% w/v aqueous HPβCD) at a concentration of 1 mg/mL. The oral dose suspension was prepared by suspending compound in 0.5% HPMC/0.1% Tween 80 in water. Concentrations of IV and PO doses were measured at the end of the study. Pharmacokinetic parameters were calculated using the nominal dose values if the measured values were within 20% of the nominal values.
Plasma samples were analyzed for compound concentrations using the LC/MS/MS method described below. Briefly, a 50 μL aliquot of each plasma sample was mixed with 100 μL of acetonitrile that contained compound as the internal standard. The mixture was vortexed and centrifuged. The supernatant was transferred and filtered through a membrane (Pall Corporation, AcroPrep 96-well filter plate, 0.2 m hydrophilic polypropylene membrane). Ten L of the resulting solution was injected onto a reverse-phase C18 column and the resultant peaks detected on a SCIEX API 4000 LC/MS/MS equipped with a turbo ionspray ionization source.
Following a bolus IV dose at 1.0 mg/kg, the mean plasma clearance (CL), volume of distribution (Vss), area under the curve (AUC) and elimination half-life (t½) was calculated or measured. Following a single oral dose at 1.0 mg/kg, the maximal plasma concentration (Cmax) and AUC∞ was measured or calculated. Oral bioavailability (% F) was calculated (% F=AUC(oral)/AUC(iv)×100).
Table F shows the PK parameters of compounds in male Sprague Dawley rats following an IV dose of the compounds at 1.0 mg/kg, wherein AUClast stands for the area under the concentration-time curve from hour 0 to the last measurable concentration, AUC∞ stands for the area under the concentration-time curve extrapolated to infinity, CL is the apparent plasma clearance, Vss is the apparent volume of distribution at steady state, and t½ is the time to maximum observed concentration.
Table G shows the PK parameters of compounds in male Sprague Dawley rats following an oral dose of the compounds at 1.0 mg/kg, wherein Cmax is the maximum observed concentration, tmax is the time to maximum observed concentration, AUClast stands for the area under the concentration-time curve from hour 0 to the last measurable concentration, AUC∞ stands for the area under the concentration-time curve extrapolated to infinity, % F is the percentage of oral bioavailability, and t½ is the time to maximum observed concentration.
For both mice and rat studies, sample concentrations below the limit of quantification (BLQ) were treated as zero for pharmacokinetic calculations.
Composite pharmacokinetic parameters were estimated from a maximum of two sampling points per mouse and three mice per sampling point and the sparse data option of WinNonlin was used for noncompartmental analysis of the concentration-time data (Phoenix WinNonLin software, version 64; Pharsight, Mountain View, Calif.).
The elimination rate constant (k) was calculated as the absolute value of the slope of the linear regression of logarithm of the concentration versus time for the last three data points of the concentration-time profiles. Apparent elimination half-life (t½) values were calculated as ln(2)/k. Area under the concentration-time curve (AUC) values were estimated using linear trapezoidal method. AUClast values were calculated from the dosing time to the last measurable concentration. AUC∞ values were calculated as the sum of the corresponding AUClast and the ratio of the last detectable concentration divided by k. Plasma clearance (CL) was calculated from Dose/AUC∞. Volume of distribution at steady state (Vss) was calculated from MRT∞×CL. Maximum concentration (Cmax) and time to reach Cmax (tmax) were recorded as observed. Bioavailability was calculated AUC∞,po/AUC∞,iv×100% where AUC was the dose normalized AUC value.
This application claims priority to and benefit of U.S. Provisional Patent Application No. 62/971,838, filed Feb. 7, 2020, the disclosure of which is hereby incorporated herein by reference in its entirety.
Filing Document | Filing Date | Country | Kind |
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PCT/US2021/016948 | 2/5/2021 | WO |
Number | Date | Country | |
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62971838 | Feb 2020 | US |