Claims
- 1. A compound or a related chemical entity of the compound, having a backbone structure of a formula selected from the group consisting of Formulae I and II:
- 2. A compound of claim 1 or a related chemical entity of a compound of claim 1, having a backbone structure of Formula I:
- 3. A compound of claim 1 or a related chemical entity of a compound of claim 1, having a backbone structure of Formula II:
- 4. A compound or a related chemical entity of the compound, having a backbone structure of Formula III:
- 5. A compound of claim 1 or a related chemical entity of a compound of claim 1, wherein X2, X3, X4, X5 and X7 are popular substitutes.
- 6. A compound of claim 2 or a related chemical entity of a compound of claim 2, wherein X2, X3, X4, X7 and R are popular substitutes.
- 7. A compound of claim 1, wherein:
X2 is a substituted alkyl motif or a sulfonyl alkyl motif; X3 is a heterocyclic motif or an amide motif; X4 and X7 are independently —H, —R or 93 or X4 and X7 taken together with the carbon atom to which both X4 and X7 are attached form a 3-6 membered cycloalkyl group; X5 is —H, —F, —OH or —O—R; and R is an alkyl group with straight or branched-chain containing 1-6 carbon atoms.
- 8. A compound of claim 4, wherein:
X2 is a substituted alkyl motif or a sulfonyl alkyl motif; X3 is a heterocyclic motif or an amide motif; X4 and X7 are independently —H, —R or 94 or X4 and X7 taken together with the carbon atom to which both X4 and X7 are attached form a 3-6 membered cycloalkyl group; and R is an alkyl group with straight or branched-chain containing 1-6 carbon atoms.
- 9. A compound of claim 7, wherein X3 is a heterocyclic motif
- 10. A compound of claim 8, wherein A3 is —C(O)—X3 and X3 is a heterocyclic motif.
- 11. A compound of claim 7, wherein X3 is an amide motif.
- 12. A compound of claim 8, wherein A3 is —C(O)—X3 and X3 is an amide motif.
- 13. A compound of claim 7, wherein X7 is —H, X4 is an alkyl group with straight or branched-chain containing 1-4 carbon atoms or
- 14. A compound of claim 13, wherein X5 is —H.
- 15. A compound of claim 14, wherein X4 is —CH2CH3, —CH2CH2CH3 —C(CH3)3 or
- 16. A compound of claim 1, having a backbone structure of Formula I, wherein X2 is a substituted alkyl motif or a sulfonyl alkyl motif, X3 is a heterocyclic motif or an amide motif, X4 is —CH2CH3, —CH2CH2CH3 —C(CH3)3 or
- 17. A related chemical entity of a compound of claim 16.
- 18. A compound of claim 1 selected from the group consisting of:
2-(2-Methyl-propane-1-sulfonylmethyl)-4-morpholin-4-yl-4-oxo-N-[(S)-1-(5-phenyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-butyramide, (R)-2-Cyclohexylmethyl-4-morpholin-4-yl-4-oxo-N-[(S)-1-(5-trifluoromethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-butyramide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(5-trifluoromethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-amide, 4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-N-[(S)-1-(5-trifluoromethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-butyramide, (R)-2-(2-Methyl-propane-1-sulfonylmethyl)-4-morpholin-4-yl-4-oxo-N-[(S)-1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-butyramide, N-[(S)-1-(5-Ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-butyramide, (R)-4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-N-[(S)-1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-butyramide, (R)-4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-N-[1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-butyramide, 4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[1-(5-ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-amide, (R)-2-Cyclohexylmethyl-N-[(S)-1-(5-ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, N-[(S)-1-(Benzoxazole-2-carbonyl)-butyl]-2-(1-benzyl-cyclopropylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, N-[(S)-1-(Benzoxazole-2-carbonyl)-butyl]-4-morpholin-4-yl-4-oxo-2-(2-phenyl-cyclopropylmethyl)-butyramide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, 4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(5-ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-amide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(5-trifluoromethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-amide, (R)-2-(1-Benzyl-cyclopropylmethyl)-N-[(S)-1-(5-ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, (R)-5-(2-Difluoromethoxy-phenyl)-4,4-dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(5-ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-amide, (S)-N-[(S)-1-(Benzoxazole-2-carbonyl)-butyl]-2-(5-methyl-thiophen-2-ylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, (R)-N-[(S)-1-(Benzoxazole-2-carbonyl)-butyl]-2-(1-benzyl-cyclopropylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, (R)-5-(2-Difluoromethoxy-phenyl)-4,4-dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, 2-(2-Morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(oxazole-2-carbonyl)-3-phenyl-propyl]-amide (mixture of diastereoisomers), 4-Morpholin-4-yl-N-[1-(oxazole-2-carbonyl)-3-phenyl-propyl]-4-oxo-2-(2-phenyl-cyclopropylmethyl)-butyramide (mixture of diastereoisomers), (R)-2-Cyclohexylmethyl-4-morpholin-4-yl-N-[(S)-1-(oxazole-2-carbonyl)-3-phenyl-propyl]-4-oxo-butyramide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(5-phenyl-1,2,4-oxadiazole-3-carbonyl)-propyl-amide, 3-Phenylmethanesulfonyl-N-[(S)-1-(5-phenyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-2-(tetrahydro-pyran-4-yloxymethyl)-propionamide, (R)-4,4,6-Trimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-heptanoic acid[(S)-1-(5-ethyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-amide, (R)-4,4,6-Trimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-heptanoic acid[(S)-1-(oxazole-2-carbonyl)-propyl]-amide, (R)-4,4,6-Trimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-heptanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-2-((S)-1-Hydroxy-2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(oxazole-2-carbonyl)-3-phenyl-propyl]-amide, (S)-2-(1-Fluoro-2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-2-((S)-1-Methoxy-2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-N-[(S)-1-(3-Cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-2-(2-methyl-propane-1-sulfonylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, (R)-2-Cyclopropylmethanesulfonylmethyl-N-[(S)-1-(3-cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(3-cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, (R)-2-(1-Benzyl-cyclopropylmethyl)-N-[(S)-1-(3-cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, (R)-4,4,6-Trimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-heptanoic acid[(S)-1-(3-cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, (R)-5-Cyclopropyl-4,4-dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(3-cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, (R)-N-[(S)-1-(3-Cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-2-(1-isobutyl-cyclopropylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, R)-2-(1-Cyclopropylmethyl-cyclopropylmethyl)-N-[(S)-1-(3-cyclopropyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, (R)-N-[(S)-1-(3-Ethyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-2-(2-methyl-propane-1-sulfonylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, (R)-2-Cyclopropylmethanesulfonylmethyl-N-[(S)-1-(3-ethyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, (S)-2-(2-Benzenesulfonyl-ethyl)-N-[(S)-1-(3-ethyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-butyramide, (S)-N-[(S)-1-(3-Ethyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-4-morpholin-4-yl-4-oxo-2-[2-(propane-2-sulfonyl)-ethyl]-butyramide, 2-(1-Methyl-cyclopentylmethyl)-4-morpholin-4-yl-N-[1-(oxazolo[4,5-b]pyridine-2-carbonyl)-propyl]-4-oxo-butyramide, (S)-3-(4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-butyrylamino)-2-oxo-pentanoic acid(pyridin-4-ylmethyl)-amide, (S)-3-(4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-butyrylamino)-2-oxo-pentanoic acid diethylamide, N-((S)-1-Ethyl-2,3-dioxo-3-pyrrolidin-1-yl-propyl)-4-morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-butyramide, (S)-3-(4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-butyrylamino)-2-oxo-pentanoic acid phenethyl-amide, and (S)-3-(4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-butyrylamino)-2-oxo-pentanoic acid (2-pyridin-2-yl-ethyl)-amide.
- 19. A compound of claim 1 selected from the group consisting of:
2-(2-Methyl-propane-1-sulfonylmethyl)-4-morpholin-4-yl-4-oxo-N-[(S)-1-(5-phenyl-1,2,4-oxadiazole-3-carbonyl)-propyl]-butyramide, (R)-4-Morpholin-4-yl-4-oxo-2-phenylmethanesulfonylmethyl-N-[1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-butyramide, N-[(S)-1-(Benzoxazole-2-carbonyl)-butyl]-2-(1-benzyl-cyclopropylmethyl)-4-morpholin-4-yl-4-oxo-butyramide, N-[(S)-1-(Benzoxazole-2-carbonyl)-butyl]-4-morpholin-4-yl-4-oxo-2-(2-phenyl-cyclopropylmethyl)-butyramide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-pentanoic acid[1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, (R)-4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[1-(3-phenyl-1,2,4-oxadiazole-5-carbonyl)-propyl]-amide, 4,4-Dimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, 2-(2-Morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(oxazole-2-carbonyl)-3-phenyl-propyl]-amide (mixture of diastereoisomers), 4-Morpholin-4-yl-N-[1-(oxazole-2-carbonyl)-3-phenyl-propyl]-4-oxo-2-(2-phenyl-cyclopropylmethyl)-butyramide (mixture of diastereoisomers), (R)-2-Cyclohexylmethyl-4-morpholin-4-yl-N-[(S)-1-(oxazole-2-carbonyl)-3-phenyl-propyl]-4-oxo-butyramide, (R)-4,4,6-Trimethyl-2-(2-morpholin-4-yl-2-oxo-ethyl)-heptanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, (R)-2-((S)-1-Hydroxy-2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(oxazole-2-carbonyl)-3-phenyl-propyl]-amide, (S)-2-(1-Fluoro-2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide, and (R)-2-((S)-1-Methoxy-2-morpholin-4-yl-2-oxo-ethyl)-5-phenyl-pentanoic acid[(S)-1-(benzoxazole-2-carbonyl)-butyl]-amide.
- 20. A related chemical entity of a compound of claim 18.
- 21. A related chemical entity of a compound of claim 19.
- 22. A method of synthesizing a compound of formula Y:
- 23. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 1 or a related chemical entity of a compound of claim 1, in combination with a pharmaceutically acceptable excipient.
- 24. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 4 or a related chemical entity of a compound of claim 4, in combination with a pharmaceutically acceptable excipient.
- 25. A pharmaceutical composition comprising a therapeutically effective amount of a compound of claim 16 in combination with a pharmaceutically acceptable excipient.
- 26. A method for treating a disease in an animal in which inhibition of Cathepsin S can prevent, inhibit or ameliorate the pathology and/or symptomology of the disease, which method comprises administering to the animal a therapeutically effective amount of a compound of claim 1 or a related chemical entity of a compound of claim 1.
- 27. A method for treating a disease in an animal in which inhibition of Cathepsin S can prevent, inhibit or ameliorate the pathology and/or symptomology of the disease, which method comprises administering to the animal a therapeutically effective amount of a compound of claim 4 or a related chemical entity of a compound of claim 4.
Parent Case Info
[0001] This application is a continuation-in-part of U.S. patent application Ser. No. 10/035,783, filed on Dec. 24, 2001, which claims priority from U.S. Provisional Application 60/257,603 filed on Dec. 22, 2000. The two applications, 10/035,783 and 60/257,603, are incorporated herein by reference.
[0002] This application relates to compounds and compositions for treating diseases associated with cysteine protease activity, particularly diseases associated with activity of cathepsin S and the processes of making the compounds.
Provisional Applications (1)
|
Number |
Date |
Country |
|
60257603 |
Dec 2000 |
US |
Continuation in Parts (1)
|
Number |
Date |
Country |
Parent |
10035783 |
Dec 2001 |
US |
Child |
10183128 |
Jun 2002 |
US |