Claims
- 1. A multibinding compound and salts thereof comprising 2 to 10 macromolecular ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to a macromolecular structure of a cell with the proviso excluding multimeric compounds having DNA binding as a primary mode of action.
- 2. A multibinding compound represented by formula I:
- 3. The multibinding compound according to claim 2 wherein q is <p.
- 4. The multibinding compound according to claim 1 or claim 2 wherein the compound is dimeric.
- 5. The multibinding compound according to claim 4 wherein the dimeric compound is heterodimeric.
- 6. The multibinding compound according to claim 1 or claim 2 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 7. The multibinding compound according to claim 6 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 8. The multibinding compound according to claim 7 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 9. The multibinding compound according to claim 8 wherein the linkers are selected to have different linker lengths ranging from about 3 to 40 Å.
- 10. The multibinding compound according to claim 1 or 2 wherein the linker is represented by the formula::
- 11. The multibinding compound according to claim 4 wherein the dimeric compound is homodimeric.
- 12. The multibinding compound according to claim 11 wherein the two macromolecular ligands are linked to the homodimeric compound at the same point of the ligand.
- 13. The multibinding compound according to claim 10 wherein the two macromolecular ligands are linked to the homodimeric compound at different points on the ligand.
- 14. A pharmaceutical composition comprising a pharmaceutically effect excipient and an effective amount of a multibinding compound or a pharmaceutically acceptable salt thereof comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to a macromolecular structure of a cell mediating mammalian or avian pathologic conditions thereby inhibiting the pathologic condition with the proviso excluding multimeric compounds having DNA binding as a primary mode of action.
- 15. A pharmaceutical composition comprising a pharmaceutically acceptable excipient and an effective amount of a multibinding compound represented by formula I:
- 16. The pharmaceutical composition according to claim 15 wherein q is <p.
- 17. The pharmaceutical composition according to claim 14 or claim 15 wherein the compound is dimeric.
- 18. The pharmaceutical composition according to claim 17 wherein the dimeric compound is heterodimeric.
- 19. The pharmaceutical composition according to claim 14 or claim 15 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 20. The pharmaceutical composition according to claim 19 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 21. The pharmaceutical composition according to claim 20 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 22. The pharmaceutical composition according to claim 21 wherein the linkers are selected to have different linker lengths ranging from about 3 to 40 Å.
- 23. The pharmaceutical composition according to claim 14 or 15 wherein the linker is represented by the formula::
- 24. A method for treating a mammalian or avian pathologic condition mediated by cells comprising macromolecular structures which method comprises administering to said mammal or avian an effective amount of a pharmaceutical composition comprising a pharmaceutically acceptable excipient and a multibinding compound or a pharmaceutically acceptable salt thereof comprising 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to a macromolecular structure of the cell(s) mediating mammalian or avian pathologic conditions with the proviso excluding multimeric compounds having DNA binding as a primary mode of action.
- 25. A method for treating a mammalian or avian pathologic condition mediated by cells comprising macromolecular structures which method comprises administering to said mammal or avian an effective amount of a pharmaceutical composition comprising a pharmaceutically acceptable excipient and a multibinding compound represented by formula I:
- 26. A method for modulating the biological processes/functions of a cell which method comprises contacting said cell with a multi-binding compound or a pharmaceutically acceptable salt thereof under conditions sufficient to modulate one or more biological processes/functions of said cell wherein said multi-binding compound comprises 2 to 10 ligands which may be the same or different and which are covalently attached to a linker or linkers which may be the same or different, each of said ligands comprising a ligand domain capable of binding to one or more macromolecular structures of the cells with the proviso excluding multimeric compounds having DNA binding as a primary mode of action.
- 27. The method according to claim 25 wherein q is <p.
- 28. The method according to claim 24, claim 25 or claim 26 wherein the compound is dimeric.
- 29. The method according to claim 28 wherein the dimeric compound is heterodimeric.
- 30. The method according to claim 24, claim 25 or claim 26 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 31. The method according to claim 30 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 32. The method according to claim 31 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 33. The method according to claim 32 wherein the linkers are selected to have different linker lengths ranging from about 3 to 40 Å.
- 34. The method compound according to claim 24, claim 25 or claim 26 wherein the linker is represented by the formula::
- 35. A method for identifying multimeric macromolecular ligand compounds possessing multibinding properties which method comprises:
(a) identifying a macromolecular ligand or a mixture of ligands wherein each ligand contains at least one reactive functionality; (b) identifying a library of linkers wherein each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; (c) preparing a multimeric macromolecular ligand compound library by combining at least two stoichiometric equivalents of the ligand or mixture of ligands identified in (a) with the library of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; and (d) assaying the multimeric macromolecular ligand compounds produced in the library prepared in (c) above to identify multimeric macromolecular ligand compounds possessing multibinding properties.
- 36. A method for identifying multimeric macromolecular ligand compounds possessing multibinding properties which method comprises:
(a) identifying a library of macromolecular ligands wherein each ligand contains at least one reactive functionality; (b) identifying a linker or mixture of linkers wherein each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; (c) preparing a multimeric macromolecular ligand compound library by combining at least two stoichiometric equivalents of the library of ligands identified in (a) with the linker or mixture of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; and (d) assaying the multimeric macromolecular ligand compounds produced in the library prepared in (c) above to identify multimeric macromolecular ligand compounds possessing multibinding properties.
- 37. The method according to claim 35 or claim 36 wherein the preparation of the multimeric macromolecular ligand compound library is achieved by either the sequential or concurrent combination of the two or more stoichiometric equivalents of the ligands identified in (a) with the linkers identified in (b).
- 38. The method according to claim 37 wherein the multimeric macromolecular ligand compounds comprising the multimeric ligand compound library are dimeric.
- 39. The method according to claim 38 wherein the dimeric macromolecular ligand compounds comprising the dimeric ligand compound library are heterodimeric.
- 40. The method according to claim 39 wherein the heterodimeric macromolecular ligand compound library is prepared by sequential addition of a first and second ligand.
- 41. The method according to claim 35 or claim 36 wherein, prior to procedure (d), each member of the multimeric macromolecular ligand compound library is isolated from the library.
- 42. The method according to claim 41 wherein each member of the library is isolated by preparative liquid chromatography mass spectrometry (LCMS).
- 43. The method according to claim 35 or claim 36 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 44. The method according to claim 43 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 45. The method according to claim 44 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 46. The method according to claim 35 or 36 wherein the ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands.
- 47. The method according to claim 46 wherein said reactive functionality is selected from the group consisting of carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates, and precursors thereof wherein the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
- 48. The method according to claim 35 or claim 36 wherein the multimeric macromolecular ligand compound library comprises homomeric ligand compounds.
- 49. The method according to claim 35 or claim 36 wherein the multimeric macromolecular ligand compound library comprises heteromeric ligand compounds.
- 50. A library of multimeric macromolecular ligand compounds which may possess multivalent properties which library is prepared by the method comprising:
(a) identifying a macromolecular ligand or a mixture of ligands wherein each ligand contains at least one reactive functionality; (b) identifying a library of linkers wherein each linker in said library comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; and (c) preparing a multimeric macromolecular ligand compound library by combining at least two stoichiometric equivalents of the ligand or mixture of ligands identified in (a) with the library of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands.
- 51. A library of multimeric macromolecular ligand compounds which may possess multivalent properties which library is prepared by the method comprising:
(a) identifying a library of macromolecular ligands wherein each ligand contains at least one reactive functionality; (b) identifying a linker or mixture of linkers wherein each linker comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand; and (c) preparing a multimeric macromolecular ligand compound library by combining at least two stoichiometric equivalents of the library of ligands identified in (a) with the linker or mixture of linkers identified in (b) under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands.
- 52. The library according to claim 50 or claim 51 wherein the linker or linkers employed are selected from the group comprising flexible linkers, rigid linkers, hydrophobic linkers, hydrophilic linkers, linkers of different geometry, acidic linkers, basic linkers, linkers of different polarization and/or polarizability and amphiphilic linkers.
- 53. The library according to claim 52 wherein the linkers comprise linkers of different chain length and/or having different complementary reactive groups.
- 54. The library according to claim 53 wherein the linkers are selected to have different linker lengths ranging from about 2 to 100 Å.
- 55. The library according to claim 50 or 51 wherein the macromolecular ligand or mixture of ligands is selected to have reactive functionality at different sites on said ligands.
- 56. The library according to claim 55 wherein said reactive functionality is selected from the group consisting of carboxylic acids, carboxylic acid halides, carboxyl esters, amines, halides, pseudohalides, isocyanates, vinyl unsaturation, ketones, aldehydes, thiols, alcohols, anhydrides, boronates, and precursors thereof wherein the reactive functionality on the ligand is selected to be complementary to at least one of the reactive groups on the linker so that a covalent linkage can be formed between the linker and the ligand.
- 57. The library according to claim 50 or claim 51 wherein the multimeric macromolecular ligand compound library comprises homomeric ligand compounds.
- 58. The library according to claim 50 or claim 51 wherein the multimeric macromolecular ligand compound library comprises heteromeric ligand compounds.
- 59. An iterative method for identifying multimeric macromolecular ligand compounds possessing multibinding properties which method comprises:
(a) preparing a first collection or iteration of multimeric macromolecular compounds which is prepared by contacting at least two stoichiometric equivalents of a macromolecular ligand or mixture of ligands which target a receptor with a linker or mixture of linkers wherein said ligand or mixture of ligands comprises at least one reactive functionality and said linker or mixture of linkers comprises at least two functional groups having complementary reactivity to at least one of the reactive functional groups of the ligand wherein said contacting is conducted under conditions wherein the complementary functional groups react to form a covalent linkage between said linker and at least two of said ligands; (b) assaying said first collection or iteration of multimeric macromolecular compounds to assess which if any of said multimeric compounds possess multibinding properties; (c) repeating the process of (a) and (b) above until at least one multimeric macromolecular compound is found to possess multibinding properties; (d) evaluating what molecular constraints imparted or are consistent with imparting multibinding properties to the multimeric macromolecular compound or compounds found in the first iteration recited in (a)-(c) above; (e) creating a second collection or iteration of multimeric macromolecular compounds which elaborates upon the particular molecular constraints imparting multibinding properties to the multimeric compound or compounds found in said first iteration; (f) evaluating what molecular constraints imparted or are consistent with imparting enhanced multibinding properties to the multimeric macromolecular compound or compounds found in the second collection or iteration recited in (e) above; (g) optionally repeating steps (e) and (f) to further elaborate upon said molecular constraints.
- 60. The method according to claim 59 wherein steps (e) and (f) are repeated from 2-50 times.
- 61. The method according to claim 60 wherein steps (e) and (f) are repeated from 5-50 times.
CROSS-REFERENCE TO RELATED APPLICATIONS
[0001] This application claims the benefit of the following U.S. Provisional Patent Applications:
[0002] 1. U.S. Provisional Application No. 60/088,464, filed Jun. 8, 1998; and
[0003] 2. U.S. Provisional Application No. 60/092,941, filed Jul. 15, 1998; each of these applications are incorporated herein by reference in its entirety.
Provisional Applications (2)
|
Number |
Date |
Country |
|
60088464 |
Jun 1998 |
US |
|
60092941 |
Jul 1998 |
US |
Continuations (2)
|
Number |
Date |
Country |
Parent |
09510176 |
Feb 2000 |
US |
Child |
10096270 |
Mar 2002 |
US |
Parent |
09326660 |
Jun 1999 |
US |
Child |
09510176 |
Feb 2000 |
US |