Patent Application
20180371107
The content of the following submission on ASCII text file is incorporated herein by reference in its entirety: a computer readable form (CRF) of the Sequence Listing (file name: 146392022740SEQLIST.txt, date recorded: Oct. 8, 2014, size: 63 KB).
The present invention relates to NSP4 inhibitors and methods of using the same.
Neutrophil serine proteases are a family of effector molecules of the innate immune system that are important for protecting against invading pathogens. Members of this trypsin-fold protease family, neutrophil elastase (NE), cathepsin G (CG), and proteinase 3 (PR3), not only play critical roles in neutrophil-mediated clearance of invading microbes (Reeves et al., Nature, 2002, 416:291-297; Weinrauch et al., Nature, 2002, 417:91-94; Belaaouaj et al., Nat Med, 1998, 4:615-618) and inflammation (Pham et al., Nat Rev Immunol, 2006, 6:541-550) but can also participate in the pathogenesis of various diseases (Magrone et al., Curr Pharm Des., 2012, 18(12):1609-19 and Pham et al., Int Biochem Cell Biol., 2008, 40(6-7):1317-1333). Recently, the serine protease PRSS57, originally discovered by yeast signal trap screening and computational mining of human cDNA libraries (Clark et al., Genome Res., 2003, 13:2265-2270), was identified as the fourth NSP member and subsequently referred to as neutrophil serine protease 4 (NSP4) (Perera et al., Proc Natl Acad Sci USA, 2012, 109:6229-6234; Perera et al., J Immunol., 2013). Remarkably, NSP4 is highly conserved from bony fishes to human and predates the emergence of other NSPs, indicating that NSP4 likely plays fundamental roles in neutrophil biology (Perera et al., Proc Natl Acad Sci USA, 2012, 109:6229-6234; Perera et al., Expert Rev Clin Immunol, 2012, 8:501-503).
The relatively broad substrate specificities of NE, CG, and PR3 are well understood based on the detailed knowledge of their active site structures (Navia et al., Proc Natl Acad Sci USA, 1989, 86:7-11; Hof et al., EMBO J, 1996, 15:5481-5491; Fujinaga et al., J Mol Biol, 1996, 261:267-278.). However, NSP4 poses a conundrum in that, like trypsin, it cleaves substrates after arginine residues (Perera et al., Proc Natl Acad Sci USA, 2012, 109:6229-6234; Perera et al., J Immunol., 2013), but paradoxically has a primary sequence that predicts a very different elastase-like active site with preference for small aliphatic amino acids and is seemingly incompatible with the long P1-arginine side chain. Due to NSP4's long evolutionary lineage, and its distinctive active site, it is possible that NSP4 is an important protease for neutrophil function and may contribute to neutrophil-mediated disease or disorders. However, relative to other members of the neutrophil serine protease family, the role of NSP4 in neutrophil-mediated diseases, such as arthritis, is unknown. For instance, the combined deficiencies of NE and CG was required to confer full protection in the mouse collagen antibody-induced arthritis model (Adkison et al., J Clin Invest, 2002, 109:363-371). NE and CG are also each capable of processing and activating IL-33 (Lefrançais et al., Proc Natl Acad Sci USA, 2012, 109:1673-1678), which is a pro-inflammatory cytokine that promotes inflammatory arthritis (Xu et al., Proc Natl Acad Sci USA, 2008, 105:10913-10918). Similarly, the combined ablation of NE and PR3 was required to prevent the inactivation of progranulin (Kessenbrock et al., J Clin Invest, 2008, 118:2438-2447), an anti-inflammatory cytokine that alleviates inflammatory arthritis (Tang et al., Science, 2011, 332:478-484).
Resolving the paradox between the predicted elastase-like active site with the actual trypsin-like active site that is exhibited by NSP4 has the potential to provide structural features of the enzyme active site that could facilitate the development of specific NSP4 inhibitors. These NSP4 inhibitors may serve a need for treatment of neutrophil-mediated diseases or disorders where the underlying pathology is completely or partially due to the activity of NSP4.
All references cited herein, including patent applications, patent publications, scientific literature, and National Center for Biotechnology Information (NCBI) Accession numbers are herein incorporated by reference in their entirety, as if each individual reference were specifically and individually indicated to be incorporated by reference.
The invention broadly provides neutrophil serine protease 4 (NSP4) inhibitors and methods of using the same.
In one aspect, provided herein is a method for treating or preventing a disease or disorder mediated by granulocytes in an individual comprising administering to the individual an effective amount of an NSP4 inhibitor. In some embodiments, the disease or disorder is an eosinophil-mediated, basophil-mediated, or a neutrophil-mediated disease or disorder. In some embodiments of the methods described herein, the disease or disorder that can be treated by a NSP4 inhibitor is a vascular disease, an inflammatory disease or an autoimmune disease. In some embodiments of the methods described herein, the disease or disorder is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, anaphylaxis, systemic anaphylaxis, allergic lung inflammation, asthma (e.g., allergic asthma, virus-induced asthma), chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases (e.g., bullous pemphigoid), inflammatory skin diseases (e.g., atopic dermatitis, urticarial, eosinophilic cellulitis), cancer (e.g., lung cancer), kidney diseases (e.g., glomerulonephritis), osteoarthritis, rheumatoid arthritis, psoriatic arthritis, psoriasis, septic shock, inflammatory bowel disease (e.g., ulcerative colitis, Crohn's disease). In some embodiments of the methods described herein, the individual has the disease or disorder or has been diagnosed with the disease or disorder. In some embodiments of the methods described herein, the individual is at risk of developing the disease or disorder. In some embodiments, the individual is a human.
In one aspect, provided herein is a method for treating or preventing a neutrophil-mediated disease or disorder in an individual comprising administering to the individual an effective amount of an NSP4 inhibitor. In some embodiments, the neutrophil-mediated disease or disorder is selected from the group consisting of vascular disease and inflammatory disease. In a further embodiment, the vascular disease is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, and cerebral ischemia. In another further embodiment, the inflammatory disease is selected from the group consisting of acute lung injury, asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis, and septic shock. In any of the embodiments herein, the individual can be a human.
In another aspect, provided herein is an NSP4 inhibitor that can be used in any of the methods described herein. In some embodiments, the NSP4 inhibitor is selected from the group consisting of an antibody, an antisense molecule, a siRNA, a small molecule inhibitor, a protease inhibitor, and a peptide inhibitor. In a further embodiment, the protease inhibitor is a serine protease inhibitor. In another further embodiment, the protease inhibitor is α1-antitrypsin, heparin-activated antithrombin, C1 inhibitor, or α2-antiplasmin.
In any of the embodiments herein, the NSP4 inhibitor can be an anti-NSP4 antibody that specifically binds to a NSP4. In any of the embodiments herein, the NSP4 inhibitor can be an anti-NSP4 antibody that specifically binds to a mature form of NSP4. In any of the embodiments herein, the NSP4 inhibitor can be an anti-NSP4 antibody that specifically binds to a mature form of NSP4 but does not bind to a precursor form of NSP4. In any of the embodiments herein, the NSP4 inhibitor can be an anti-NSP4 antibody that specifically binds to a human NSP4. In any of the embodiments herein, the NSP4 inhibitor can be an anti-NSP4 antibody that specifically binds to a mouse NSP4. In any of the embodiments herein, the NSP4 inhibitor can be an anti-NSP4 antibody that specifically binds to both a human NSP4 and a mouse NSP4. In any of the embodiments herein, the anti-NSP4 antibody can be a monoclonal antibody. In any of the embodiments herein, the anti-NSP4 antibody can be an antibody fragment selected from the group consisting of Fab, Fab′-SH, Fv, scFv, and (Fab′)2 fragments. In any of the embodiments herein, the anti-NSP4 antibody can be a humanized antibody or a chimeric antibody. In any of the embodiments herein, the anti-NSP4 antibody can comprise at least one, two, three, four, five, or six HVRs selected from (i) HVR-L1 comprising the amino acid sequence of SEQ ID NO:10; (ii) HVR-L2 comprising the amino acid sequence of SEQ ID NO:11; (iii) HVR-L3 comprising the amino acid sequence of SEQ ID NO:12; (iv) HVR-H1 comprising the amino acid sequence of SEQ ID NO:1, 4, or 7; (v) HVR-H2 comprising the amino acid sequence of SEQ ID NO:2, 5, or 8; (vi) HVR-H3 comprising the amino acid sequence of SEQ ID NO:3, 6, or 9. In any of the embodiments herein, the anti-NSP4 antibody can comprise a light chain variable region comprising the amino acid sequence of SEQ ID NO:16, and a heavy chain variable region comprising the amino acid sequence of SEQ ID NO:13, 14 or 15.
In some of the embodiments herein, the NSP4 inhibitor can be administered intravenously, intramuscularly, subcutaneously, topically, orally, transdermally, intraperitoneally, intraorbitally, by implantation, by inhalation, intrathecally, intraventricularly, or intranasally. In any of the embodiments herein, the NSP4 inhibitor can be formulated in a pharmaceutical composition comprising the NSP4 inhibitor and a pharmaceutically acceptable carrier.
In yet another aspect, provided herein is an article of manufacture comprising a NSP4 inhibitor and a package insert comprising instructions for using the NSP4 inhibitor to treat or prevent a disease or disorder mediated by granulocytes in an individual. In some embodiments, the disease or disorder is an eosinophil-mediated, basophil-mediated, or a neutrophil-mediated disease or disorder. In some embodiments, the disease or disorder that can be treated by a NSP4 inhibitor is a vascular disease, an inflammatory disease, or an autoimmune disease. In some embodiments, the disease or disorder is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, anaphylaxis, systemic anaphylaxis, allergic lung inflammation, asthma (e.g., allergic asthma, virus-induced asthma), chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases (e.g., bullous pemphigoid), inflammatory skin diseases (e.g., atopic dermatitis, urticarial, eosinophilic cellulitis), cancer (e.g., lung cancer), kidney diseases (e.g., glomerulonephritis), osteoarthritis, rheumatoid arthritis, psoriatic arthritis, psoriasis, septic shock, inflammatory bowel disease (e.g., ulcerative colitis, Crohn's disease). In some embodiments, the individual has the disease or disorder or has been diagnosed with the disease or disorder. In some embodiments, the individual is at risk of developing the disease or disorder. In some embodiments, the individual is a human.
In yet another aspect, provided herein is an article of manufacture comprising a NSP4 inhibitor and a package insert comprising instructions for using the NSP4 inhibitor to treat or prevent a neutrophil-mediated disease or disorder in an individual. In some embodiments, the neutrophil-mediated disease or disorder is selected from the group consisting of vascular disease and inflammatory disease. In a further embodiment, the vascular disease is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, and cerebral ischemia. In another further embodiment, the inflammatory disease is selected from the group consisting of acute lung injury, asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis, and septic shock. In any of the embodiments herein, the individual can be a human.
In another aspect, provided here is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50); (b) HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (c) HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSX1X2X3PX4T (SEQ ID NO:95), wherein X1 is Y or A; X2 is T, G, or D; X3 is T or F; and X4 is P or L. In yet another aspect, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50), an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51), and an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSX1X2X3PX4T (SEQ ID NO:95), wherein X1 is Y or A; X2 is T, G, or D; X3 is T or F; and X4 is P or L. In certain embodiments, the HVR-L3 comprises the sequence selected from the group consisting of SEQ ID NO:12 and 92-94.
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50); (b) HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (c) HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the anti-NSP4 antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50), an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51), and an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:78 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises a variable domain comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 35.WT (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 35.WT (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50); (b) HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (c) HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYGFPLT (SEQ ID NO:92). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50), an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51), and an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYGFPLT (SEQ ID NO:92). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:78 and/or a light chain variable region comprising the sequence of SEQ ID NO:102. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 35.14 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 35.14 (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50); (b) HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (c) HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYDFPLT (SEQ ID NO:93). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50), an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51), and an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYDFPLT (SEQ ID NO:93). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:78 and/or a light chain variable region comprising the sequence of SEQ ID NO:103. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 35.50 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 35.50 (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50); (b) HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (c) HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSAGFPLT (SEQ ID NO:94). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50), an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51), and an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSAGFPLT (SEQ ID NO:94). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:78 and/or a light chain variable region comprising the sequence of SEQ ID NO:104. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 35.62 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 35.62 (e.g., as shown in Table 7).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising (a) an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (b) an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and (c) an HVR-L3 comprising the sequence of QQSX1X2X3PX4T (SEQ ID NO:95), wherein X1 is Y or A; X2 is T, G, or D; X3 is T or F; and X4 is P or L. In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (b) an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (b) an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and (c) an HVR-L3 comprising the sequence of QQSYGFPLT (SEQ ID NO:92). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (b) an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and (c) an HVR-L3 comprising the sequence of QQSYDFPLT (SEQ ID NO:93). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (b) an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and (c) an HVR-L3 comprising the sequence of QQSAGFPLT (SEQ ID NO:94).
In another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of KRHLHNVAFDY (SEQ ID NO:87); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQAYSAPPT (SEQ ID NO:96). In some embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of KRHLHNVAFDY (SEQ ID NO:87); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQAYSAPPT (SEQ ID NO:96). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:105 and/or a light chain variable region comprising the sequence of SEQ ID NO:106. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 35.77 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 35.77 (e.g., as shown in Table 7).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of KRHLHNVAFDY (SEQ ID NO:87); and (c) an HVR-L3 comprising the sequence of QQAYSAPPT (SEQ ID NO:96).
In another aspect, provided herein an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66) or the sequence of AWIPTAGGNTYYADSVKG (SEQ ID NO:88); (c) HVR-H3 comprising the sequence of X1X2X3FHNVAFDY (SEQ ID NO:91), wherein X1 is K or R; X2 is S, G, or V; and X3 is L or F; (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQX1X2 X3X4PPT (SEQ ID NO:101), wherein X1 is S, A, N, or T; X2 is Y, N, or F; X3 is T, S, or N; and X4 is T, A, or S. In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66) or the sequence of AWIPTAGGNTYYADSVKG (SEQ ID NO:88), and an HVR-H3 comprising the sequence of X1X2X3FHNVAFDY (SEQ ID NO:91), wherein X1 is K or R; X2 is S, G, or V; and X3 is L or F; and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQX1X2 X3X4PPT (SEQ ID NO:101), wherein X1 is S, A, N, or T; X2 is Y, N, or F; X3 is T, S, or N; and X4 is T, A, or S. In certain embodiments, the HVR-H3 comprises the sequence selected from the group consisting of SEQ ID NO:67, 89, and 90. In certain embodiments, the HVR-L3 comprises the sequence selected from the group consisting of SEQ ID NO:12 and 97-100. In certain embodiments, the HVR-H3 comprises the sequence selected from the group consisting of SEQ ID NO:67, 89, and 90, and the HVR-L3 comprises the sequence selected from the group consisting of SEQ ID NO:12 and 97-100.
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:83 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.WT (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.WT (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWIPTAGGNTYYADSVKG (SEQ ID NO:88); (c) HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWIPTAGGNTYYADSVKG (SEQ ID NO:88), and an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:107 and/or a light chain variable region comprising the sequence of SEQ ID NO:108. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.30 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.30 (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises a variable domain comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQANSTPPT (SEQ ID NO:98). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQANSTPPT (SEQ ID NO:98). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:83 and/or a light chain variable region comprising the sequence of SEQ ID NO:109. In certain embodiments, the antibody comprises a variable domain comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.50 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.50 (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of RGLFHNVAFDY (SEQ ID NO:89); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of RGLFHNVAFDY (SEQ ID NO:89); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:110 and/or a light chain variable region comprising the sequence of SEQ ID NO:108. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.51 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.51 (e.g., as shown in Table 7).
In certain embodiments, the NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of RVFFHNVAFDY (SEQ ID NO:90); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQNFSSPPT (SEQ ID NO:99). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of RVFFHNVAFDY (SEQ ID NO:90); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQNFSSPPT (SEQ ID NO:99). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:111 and/or a light chain variable region comprising the sequence of SEQ ID NO:112. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.59 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.59 (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:83 and/or a light chain variable region comprising the sequence of SEQ ID NO:108. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.72 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.72 (e.g., as shown in Table 7).
In certain embodiments, the anti-NSP4 antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of RGLFHNVAFDY (SEQ ID NO:89); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQTYNAPPT (SEQ ID NO:100). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of RGLFHNVAFDY (SEQ ID NO:89); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQTYNAPPT (SEQ ID NO:100). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:110 and/or a light chain variable region comprising the sequence of SEQ ID NO:113. In certain embodiments, the antibody comprises at least one, two, three, four, five or six hypervariable region (HVR) sequences of antibody 51.82 (e.g., as shown in Tables 5-7). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 51.82 (e.g., as shown in Table 7).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66) or the sequence of AWIPTAGGNTYYADSVKG (SEQ ID NO:88); (b) an HVR-H3 comprising the sequence of X1X2X3FHNVAFDY (SEQ ID NO:91), wherein X1 is K or R; X2 is S, G, or V; and X3 is L or F; and (c) an HVR-L3 comprising the sequence of QQX1X2 X3X4PPT (SEQ ID NO:101), wherein X1 is S, A, N, or T; X2 is Y, N, or F; X3 is T, S, or N; and X4 is T, A, or S. In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWIPTAGGNTYYADSVKG (SEQ ID NO:88); (b) an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and (c) an HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and (c) an HVR-L3 comprising the sequence of QQANSTPPT (SEQ ID NO:98). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of RGLFHNVAFDY (SEQ ID NO:89); and (c) an HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of RVFFHNVAFDY (SEQ ID NO:90); and (c) an HVR-L3 comprising the sequence of QQNFSSPPT (SEQ ID NO:99). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and (c) an HVR-L3 comprising the sequence of QQSYTAPPT (SEQ ID NO:97). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of RGLFHNVAFDY (SEQ ID NO:89); and (c) an HVR-L3 comprising the sequence of QQTYNAPPT (SEQ ID NO:100).
In another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSWIS (SEQ ID NO:20); (b) HVR-H2 comprising the sequence of GTISPYNGSTYYADSVKG (SEQ ID NO:21); (c) HVR-H3 comprising the sequence of RVLRPKVYASVMDY (SEQ ID NO:22); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) HVR-H2 comprising the sequence of GTISPYNGSTYYADSVKG (SEQ ID NO:21); (b) HVR-H3 comprising the sequence of RVLRPKVYASVMDY (SEQ ID NO:22); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSWIS (SEQ ID NO:20), an HVR-H2 comprising the sequence of GTISPYNGSTYYADSVKG (SEQ ID NO:21), and an HVR-H3 comprising the sequence of RVLRPKVYASVMDY (SEQ ID NO:22); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:68 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 1-1 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 1-1 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGYSIH (SEQ ID NO:23); (b) HVR-H2 comprising the sequence of AGISPTNGYTDYADSVKG (SEQ ID NO:24); (c) HVR-H3 comprising the sequence of RLVFYRGVMDY (SEQ ID NO:25); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AGISPTNGYTDYADSVKG (SEQ ID NO:24); (b) an HVR-H3 comprising the sequence of RLVFYRGVMDY (SEQ ID NO:25); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGYSIH (SEQ ID NO:23), an HVR-H2 comprising the sequence of AGISPTNGYTDYADSVKG (SEQ ID NO:24), and an HVR-H3 comprising the sequence of RLVFYRGVMDY (SEQ ID NO:25); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:69 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 1-2 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 1-2 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNWIS (SEQ ID NO:26); (b) HVR-H2 comprising the sequence of GYIYPASGYTDYADSVKG (SEQ ID NO:27); (c) HVR-H3 comprising the sequence of SDSPHAYWYAMDY (SEQ ID NO:28); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GYIYPASGYTDYADSVKG (SEQ ID NO:27); (b) an HVR-H3 comprising the sequence of SDSPHAYWYAMDY (SEQ ID NO:28); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNWIS (SEQ ID NO:26), an HVR-H2 comprising the sequence of GYIYPASGYTDYADSVKG (SEQ ID NO:27), and an HVR-H3 comprising the sequence of SDSPHAYWYAMDY (SEQ ID NO:28); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:70 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 1-3 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 1-3 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTNNSIS (SEQ ID NO:29); (b) HVR-H2 comprising the sequence of GAISPNNGSTYYADSVKG (SEQ ID NO:30); (c) HVR-H3 comprising the sequence of RNAWHYSWVGVMDY (SEQ ID NO:31); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GAISPNNGSTYYADSVKG (SEQ ID NO:30); (b) an HVR-H3 comprising the sequence of RNAWHYSWVGVMDY (SEQ ID NO:31); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTNNSIS (SEQ ID NO:29), an HVR-H2 comprising the sequence of GAISPNNGSTYYADSVKG (SEQ ID NO:30), and an HVR-H3 comprising the sequence of RNAWHYSWVGVMDY (SEQ ID NO:31); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:71 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 1-5 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 1-5 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTDYSIH (SEQ ID NO:32); (b) HVR-H2 comprising the sequence of AEIYPYSGDTYYADSVKG (SEQ ID NO:33); (c) HVR-H3 comprising the sequence of RDGDGWFDWAMDY (SEQ ID NO:34); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AEIYPYSGDTYYADSVKG (SEQ ID NO:33); (b) an HVR-H3 comprising the sequence of RDGDGWFDWAMDY (SEQ ID NO:34); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTDYSIH (SEQ ID NO:32), an HVR-H2 comprising the sequence of AEIYPYSGDTYYADSVKG (SEQ ID NO:33), and an HVR-H3 comprising the sequence of RDGDGWFDWAMDY (SEQ ID NO:34); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:72 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 2-1 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 2-1 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSSTAIS (SEQ ID NO:35); (b) HVR-H2 comprising the sequence of GEIYPSDGYTDYADSVKG (SEQ ID NO:36); (c) HVR-H3 comprising the sequence of RVKWAVSSLGVMDY (SEQ ID NO:37); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GEIYPSDGYTDYADSVKG (SEQ ID NO:36); (b) an HVR-H3 comprising the sequence of RVKWAVSSLGVMDY (SEQ ID NO:37); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSSTAIS (SEQ ID NO:35), an HVR-H2 comprising the sequence of GEIYPSDGYTDYADSVKG (SEQ ID NO:36), and an HVR-H3 comprising the sequence of RVKWAVSSLGVMDY (SEQ ID NO:37); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:73 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 2-2 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 2-2 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTDSDIS (SEQ ID NO:38); (b) HVR-H2 comprising the sequence of AWISPSDGATDYADSVKG (SEQ ID NO:39); (c) HVR-H3 comprising the sequence of HEASDDDYAIDY (SEQ ID NO:40); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPSDGATDYADSVKG (SEQ ID NO:39); (b) an HVR-H3 comprising the sequence of HEASDDDYAIDY (SEQ ID NO:40); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTDSDIS (SEQ ID NO:38), an HVR-H2 comprising the sequence of AWISPSDGATDYADSVKG (SEQ ID NO:39), and an HVR-H3 comprising the sequence of HEASDDDYAIDY (SEQ ID NO:40); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:74 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 2-3 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 2-3 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDYWIS (SEQ ID NO:41); (b) HVR-H2 comprising the sequence of AGISPNNGDTYYADSVKG (SEQ ID NO:42); (c) HVR-H3 comprising the sequence of REDDDERDYAMDY (SEQ ID NO:43); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AGISPNNGDTYYADSVKG (SEQ ID NO:42); (b) an HVR-H3 comprising the sequence of REDDDERDYAMDY (SEQ ID NO:43); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDYWIS (SEQ ID NO:41), an HVR-H2 comprising the sequence of AGISPNNGDTYYADSVKG (SEQ ID NO:42), and an HVR-H3 comprising the sequence of REDDDERDYAMDY (SEQ ID NO:43); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:75 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 2-4 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 2-4 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTGYGIS (SEQ ID NO:44); (b) HVR-H2 comprising the sequence of GWIYPASGATYYADSVKG (SEQ ID NO:45); (c) HVR-H3 comprising the sequence of RHRAFDWYPYYIGSSVMDY (SEQ ID NO:46); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GWIYPASGATYYADSVKG (SEQ ID NO:45); (b) an HVR-H3 comprising the sequence of RHRAFDWYPYYIGSSVMDY (SEQ ID NO:46); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTGYGIS (SEQ ID NO:44), an HVR-H2 comprising the sequence of GWIYPASGATYYADSVKG (SEQ ID NO:45), and an HVR-H3 comprising the sequence of RHRAFDWYPYYIGSSVMDY (SEQ ID NO:46); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:76 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 2-5 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 2-5 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDYSIS (SEQ ID NO:47); (b) HVR-H2 comprising the sequence of GEINPAGGATYYADSVKG (SEQ ID NO:48); (c) HVR-H3 comprising the sequence of RGDFPFWSDAYYVMDY (SEQ ID NO:49); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GEINPAGGATYYADSVKG (SEQ ID NO:48); (b) an HVR-H3 comprising the sequence of RGDFPFWSDAYYVMDY (SEQ ID NO:49); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDYSIS (SEQ ID NO:47), an HVR-H2 comprising the sequence of GEINPAGGATYYADSVKG (SEQ ID NO:48), and an HVR-H3 comprising the sequence of RGDFPFWSDAYYVMDY (SEQ ID NO:49); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:77 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 3-2 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 3-2 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50); (b) HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (c) HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51); (b) an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSDNDIS (SEQ ID NO:50), an HVR-H2 comprising the sequence of GSISPDNGDTNYADSVKG (SEQ ID NO:51), and an HVR-H3 comprising the sequence of RDDVPAVFTSAMDY (SEQ ID NO:52); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:78 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 3-5 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 3-5 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSDIS (SEQ ID NO:53); (b) HVR-H2 comprising the sequence of GEIYPSNGDTYYADSVKG (SEQ ID NO:54); (c) HVR-H3 comprising the sequence of RSVRPSWWAMDY (SEQ ID NO:55); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GEIYPSNGDTYYADSVKG (SEQ ID NO:54); (b) an HVR-H3 comprising the sequence of RSVRPSWWAMDY (SEQ ID NO:55); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSDIS (SEQ ID NO:53), an HVR-H2 comprising the sequence of GEIYPSNGDTYYADSVKG (SEQ ID NO:54), and an HVR-H3 comprising the sequence of RSVRPSWWAMDY (SEQ ID NO:55); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:79 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 4-2 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 4-2 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSSYDIS (SEQ ID NO:56); (b) HVR-H2 comprising the sequence of GTISPYDGYTDYADSVKG (SEQ ID NO:57); (c) HVR-H3 comprising the sequence of RYIRRYSVHYGMDY (SEQ ID NO:58); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GTISPYDGYTDYADSVKG (SEQ ID NO:57); (b) an HVR-H3 comprising the sequence of RYIRRYSVHYGMDY (SEQ ID NO:58); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSSYDIS (SEQ ID NO:56), an HVR-H2 comprising the sequence of GTISPYDGYTDYADSVKG (SEQ ID NO:57), and an HVR-H3 comprising the sequence of RYIRRYSVHYGMDY (SEQ ID NO:58); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:80 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 4-3 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 4-3 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTSTSIH (SEQ ID NO:59); (b) HVR-H2 comprising the sequence of AEITPHGGYTNYADSVKG (SEQ ID NO:60); (c) HVR-H3 comprising the sequence of RGRTKWGWLYGMDY (SEQ ID NO:61); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AEITPHGGYTNYADSVKG (SEQ ID NO:60); (b) an HVR-H3 comprising the sequence of RGRTKWGWLYGMDY (SEQ ID NO:61); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTSTSIH (SEQ ID NO:59), an HVR-H2 comprising the sequence of AEITPHGGYTNYADSVKG (SEQ ID NO:60), and an HVR-H3 comprising the sequence of RGRTKWGWLYGMDY (SEQ ID NO:61); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:81 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 4-4 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 4-4 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTNNSIH (SEQ ID NO:62); (b) HVR-H2 comprising the sequence of AEIAPDDGYTYYADSVKG (SEQ ID NO:63); (c) HVR-H3 comprising the sequence of RGVIRYAYLYAMDY (SEQ ID NO:64); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AEIAPDDGYTYYADSVKG (SEQ ID NO:63); (b) an HVR-H3 comprising the sequence of RGVIRYAYLYAMDY (SEQ ID NO:64); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTNNSIH (SEQ ID NO:62), an HVR-H2 comprising the sequence of AEIAPDDGYTYYADSVKG (SEQ ID NO:63), and an HVR-H3 comprising the sequence of RGVIRYAYLYAMDY (SEQ ID NO:64); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:82 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 4-5 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 4-5 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65); (b) HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (c) HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66); (b) an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGSGIH (SEQ ID NO:65), an HVR-H2 comprising the sequence of AWISPTGGNTYYADSVKG (SEQ ID NO:66), and an HVR-H3 comprising the sequence of KSLFHNVAFDY (SEQ ID NO:67); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:83 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 5-1 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 5-1 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSNTYIS (SEQ ID NO:1); (b) HVR-H2 comprising the sequence of GFIYPANGATYYADSVKG (SEQ ID NO:2); (c) HVR-H3 comprising the sequence of RRYRLSFDY (SEQ ID NO:3); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of GFIYPANGATYYADSVKG (SEQ ID NO:2); (b) an HVR-H3 comprising the sequence of RRYRLSFDY (SEQ ID NO:3); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSNTYIS (SEQ ID NO:1), an HVR-H2 comprising the sequence of GFIYPANGATYYADSVKG (SEQ ID NO:2), and an HVR-H3 comprising the sequence of RRYRLSFDY (SEQ ID NO:3); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:84 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 5-2 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 5-2 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFSGNDIS (SEQ ID NO:4); (b) HVR-H2 comprising the sequence of AGISPYGGSTYYADSVKG (SEQ ID NO:5); (c) HVR-H3 comprising the sequence of RRVSFYSRHAGMDY (SEQ ID NO:6); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AGISPYGGSTYYADSVKG (SEQ ID NO:5); (b) an HVR-H3 comprising the sequence of RRVSFYSRHAGMDY (SEQ ID NO:6); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFSGNDIS (SEQ ID NO:4), an HVR-H2 comprising the sequence of AGISPYGGSTYYADSVKG (SEQ ID NO:5), and an HVR-H3 comprising the sequence of RRVSFYSRHAGMDY (SEQ ID NO:6); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:85 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 5-3 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 5-3 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In yet another aspect, provided herein is an anti-NSP4 antibody comprising at least one, two, three, four, five or six hypervariable region (HVR) sequences selected from the group consisting of: (a) HVR-H1 comprising the sequence of GFTFTSYAIS (SEQ ID NO:7); (b) HVR-H2 comprising the sequence of AGISPSNGYTNYADSVKG (SEQ ID NO:8); (c) HVR-H3 comprising the sequence of RAGRWTHSDIDY (SEQ ID NO:9); (d) HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19); (e) HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11); and (f) HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises (a) an HVR-H2 comprising the sequence of AGISPSNGYTNYADSVKG (SEQ ID NO:8); (b) an HVR-H3 comprising the sequence of RAGRWTHSDIDY (SEQ ID NO:9); and (c) an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain and a light chain, wherein (a) the heavy chain comprises an HVR-H1 comprising the sequence of GFTFTSYAIS (SEQ ID NO:7), an HVR-H2 comprising the sequence of AGISPSNGYTNYADSVKG (SEQ ID NO:8), and an HVR-H3 comprising the sequence of RAGRWTHSDIDY (SEQ ID NO:9); and/or (b) the light chain comprises an HVR-L1 comprising the sequence of RASQDVS (SEQ ID NO:19), an HVR-L2 comprising the sequence of SASFLYS (SEQ ID NO:11), and an HVR-L3 comprising the sequence of QQSYTTPPT (SEQ ID NO:12). In certain embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:86 and/or a light chain variable region comprising the sequence of SEQ ID NO:16. In certain embodiments, the antibody comprises at least one, two, three, four, five, or six hypervariable region (HVR) sequences of antibody 5-4 (e.g., as shown in Tables 3 and 4 and SEQ ID NO:19, 11, and 12). In certain embodiments, the antibody comprises a heavy chain variable region sequence and/or a light chain variable region sequence of antibody 5-4 (e.g., as shown in Table 4 and SEQ ID NO:19, 11, and 12).
In certain embodiments that may be combined with any of the above embodiments, the antibody comprises a heavy chain constant region comprising the sequence of SEQ ID NO:114. In certain embodiments that may be combined with any of the above embodiments, the antibody comprises a light chain constant region comprising the sequence of SEQ ID NO:115.
In yet another aspect, provided herein is an anti-NSP4 antibody that specifically binds an NSP4 active site. In another aspect, provided herein is an anti-NSP4 antibody that inhibits catalytic activity of NSP4. In another aspect, provided herein is an anti-NSP4 antibody that specifically binds an NSP4 active site and inhibits catalytic activity of NSP4.
In yet another aspect, provided herein is an anti-NSP4 antibody that specifically binds an NSP4 heparin binding site. In another aspect, provided herein is an anti-NSP4 antibody that competes with heparin for binding to NSP4. In another aspect, provided herein is an anti-NSP4 antibody that specifically binds an NSP4 heparin binding site and competes with heparin for binding to NSP4.
In certain embodiments that may be combined with any of the above embodiments, the antibody is a monoclonal antibody. In certain embodiments that may be combined with any of the preceding embodiments, the antibody is an antibody fragment selected from the group consisting of a Fab, Fab′-SH, Fv, scFv, and (Fab′)2 fragment. In certain embodiments that may be combined with any of the preceding embodiments, the antibody comprises a constant region of human IgG1, IgG2, IgG3, or IgG4. In certain embodiments that may be combined with any of the preceding embodiments, the antibody specifically binds to a mature form of a NSP4. In certain embodiments that may be combined with any of the preceding embodiments, the antibody specifically binds to a mature form of NSP4 but does not bind to a precursor form of NSP4. In certain embodiments that may be combined with any of the preceding embodiments, the antibody specifically binds to a human NSP4. In certain embodiments that may be combined with any of the preceding embodiments, the antibody specifically binds to a mouse NSP4. In certain embodiments that may be combined with any of the preceding embodiments, the antibody specifically binds to both a human NSP4 and a mouse NSP4.
In another aspect, provided herein is an isolated nucleic acid encoding any of the antibodies described herein. In another aspect, provided herein is a vector comprising the nucleic acid described herein. In another aspect, provided herein is a host cell comprising the nucleic acid described herein. In another aspect, provided herein is a method for producing an antibody described herein comprising culturing the host cell described herein under conditions suitable for production of the antibody. In certain embodiments, the method for producing an antibody described herein further comprises recovering the antibody described herein produced by the host cell described herein. In another aspect, provided herein is an antibody produced by the method for producing an antibody described herein. In another aspect, provided herein is a pharmaceutical composition comprising any of the antibodies described herein and a pharmaceutically acceptable carrier.
In yet another aspect, provided herein is a method for treating or preventing a disease or disorder mediated by granulocytes in an individual comprising administering to the individual an effective amount of any of the antibodies described herein. In certain embodiments, the antibody specifically binds an NSP4 active site and/or inhibits catalytic activity of NSP4. In certain embodiments, the antibody specifically binds an NSP4 heparin binding site and/or competes with heparin for binding to NSP4. In certain embodiments, an effective amount of an antibody that specifically binds an NSP4 active site and/or inhibits catalytic activity of NSP4 and an antibody that specifically binds an NSP4 heparin binding site and/or competes with heparin for binding to NSP4 is administered to the individual. In certain embodiments that may be combined with any of the preceding embodiments, the disease or disorder is a neutrophil-mediated, an eosinophil-mediated, or a basophil-mediated disease or disorder. In certain embodiments, the neutrophil-mediated disease or disorder is selected from vascular disease and inflammatory disease. In certain embodiments, the vascular disease is selected from stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, and cerebral ischemia. In certain embodiments, the inflammatory disease is selected from acute lung injury, asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis, and septic shock. In certain embodiments, the disease or disorder is selected from stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, systemic lupus erythematosus (SLE), autoimmune vasculitides, cerebral ischemia, acute lung injury, anaphylaxis, systemic anaphylaxis, allergic lung inflammation, idiopathic lung fibrosis, asthma, allergic asthma, virus-induced asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis, psoriasis, psoriatic arthritis, blistering skin disease, bullous pemphigoid, inflammatory skin disease, atopic dermatitis, urticaria, eosinophilic cellulitis, cancer, lung cancer, kidney disease, glomerulonephritis, septic shock, inflammatory bowel disease, ulcerative colitis, and Crohn's disease. In certain embodiments that may be combined with any of the preceding embodiments, the individual is a human. In certain embodiments that may be combined with any of the preceding embodiments, the antibody is administered intravenously, intramuscularly, subcutaneously, topically, orally, transdermally, intraperitoneally, intraorbitally, by implantation, by inhalation, intrathecally, intraventricularly, or intranasally. In certain embodiments that may be combined with any of the preceding embodiments, the anti-NSP4 antibody is formulated in a pharmaceutical composition comprising the antibody and a pharmaceutically acceptable carrier.
In yet another aspect, provided herein is an article of manufacture comprising any of the antibodies described herein. In certain embodiments, the article of manufacture further comprises a package insert comprising instructions for using the antibody to treat or prevent a disease or disorder mediated by granulocytes in an individual. In some embodiments, the disease or disorder is an eosinophil-mediated, basophil-mediated, or a neutrophil-mediated disease or disorder. In some embodiments, the disease or disorder that can be treated by an antibody described herein is a vascular disease, an inflammatory disease, or an autoimmune disease. In some embodiments, the disease or disorder is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, anaphylaxis, systemic anaphylaxis, allergic lung inflammation, asthma (e.g., allergic asthma, virus-induced asthma), chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases (e.g., bullous pemphigoid), inflammatory skin diseases (e.g., atopic dermatitis, urticarial, eosinophilic cellulitis), cancer (e.g., lung cancer), kidney diseases (e.g., glomerulonephritis), osteoarthritis, rheumatoid arthritis, psoriatic arthritis, psoriasis, septic shock, inflammatory bowel disease (e.g., ulcerative colitis, Crohn's disease). In some embodiments, the individual has the disease or disorder or has been diagnosed with the disease or disorder. In some embodiments, the individual is at risk of developing the disease or disorder. In some embodiments, the individual is a human.
It is to be understood that one, some, or all of the properties of the various embodiments described herein may be combined to form other embodiments of the present invention. These and other aspects of the invention will become apparent to one of skill in the art. These and other embodiments of the invention are further described by the detailed description that follows.
The terms “neutrophil serine protease 4” of “NSP4” as used herein, refer to any native NSP4 from any mammals such as primates (e.g., human, rhesus, chimpanzee NSP4) and rodents (e.g., mice and rats), unless otherwise indicated. The term encompasses “full-length,” unprocessed NSP4 such as a precursor or zymogen form of NSP4 as well as any form of NSP4 that results from proteolytic cleavage such as a mature or active form of NSP4. The term also encompasses naturally occurring variants of NSP4, e.g., splice variants or allelic variants. The amino acid sequence of an exemplary human NSP4 is shown in SEQ ID NO:17. The amino acid sequence of another exemplary human NSP4 is shown in SEQ ID NO:18.
The term “neutrophil serine protease 4 inhibitor” or “NSP4 inhibitor,” as used herein, refers to a molecule that blocks, inhibits, reduces (including significantly), or interferes with a NSP4 (mammalian, such as a human NSP4) biological activity in vitro, in situ, and/or in vivo. The term “inhibitor” implies no specific mechanism of biological action whatsoever, and expressly includes and encompasses all possible pharmacological, physiological, and biochemical interactions with a NSP4 whether direct or indirect, and whether interacting with a NSP4, its substrate, or through another mechanism, and its consequences which can be achieved by a variety of different, and chemically divergent, compositions. Exemplary NSP4 inhibitors include, but are not limited to, an anti-NSP4 antibody that specifically binds to a NSP4 or one or both the precursor form and mature form of a NSP4, an anti-sense molecule directed to a nucleic acid encoding a NSP4, a short interfering RNA (“siRNA”) molecule directed to a nucleic acid encoding a NSP4, a NSP4 inhibitory compound, an RNA or DNA aptamer that binds to a NSP4 or one or both the precursor form and mature form of a NSP4, and a NSP4 structural analog. In some embodiments, a NSP4 inhibitor (e.g., an antibody) binds (physically interacts with) a NSP4, binds to a NSP4 substrate, and/or inhibits (reduces) NSP4 synthesis, production or release. In other embodiments, a NSP4 inhibitor binds a NSP4 and prevents its binding to its substrate. In still other embodiments, a NSP4 inhibitor reduces or eliminates expression (i.e., transcription or translation) or proteolytic processing of a NSP4. Examples of types of NSP4 inhibitors are provided herein.
As used herein, the term “RNA interference” or “RNAi” refers generally to a process in which a double-stranded RNA molecule or a short hairpin RNA molecule reducing or inhibiting the expression of a nucleic acid sequence with which the double-stranded or short hairpin RNA molecule shares substantial or total homology. The term “short interfering RNA” or “siRNA” or “RNAi agent” refers to an RNA sequence that elicits RNA interference. See Kreutzer et al., WO 00/44895; Zernicka-Goetz et al., WO 01/36646; Fire, WO 99/32619; Mello and Fire, WO 01/29058. As used herein, siRNA molecules include RNA molecules encompassing chemically modified nucleotides and non-nucleotides. The term “ddRNAi agent” refers to a DNA-directed RNAi agent that is transcribed from an exogenous vector. The terms “short hairpin RNA” or “shRNA” refer to an RNA structure having a duplex region and a loop region. In certain embodiments, ddRNAi agents are expressed initially as shRNAs.
As used herein, the term “aptamer” refers to a heterologous oligonucleotide capable of binding tightly and specifically to a desired molecular target, such as, for example, common metabolic cofactors (e.g., Coenzyme A, S-adenosyl methionine, and the like), proteins (e.g., complement protein C5, antibodies, and the like), or conserved structural elements in nucleic acid molecules (e.g., structures important for binding of transcription factors and the like). Aptamers typically comprise DNA or RNA nucleotide sequences ranging from about 10 to about 100 nucleotides in length, from about 10 to about 75 nucleotides in length, from about 10 to about 50 nucleotides in length, from about 10 to about 35 nucleotides in length, and from about 10 to about 25 nucleotides in length. Synthetic DNA or RNA oligonucleotides can be made using standard solid phase phosphoramidite methods and equipment, such as by using a 3900 High Throughput DNA Synthesizer™ available from Applied Biosystems (Foster City, Calif.). Aptamers frequently incorporate derivatives or analogs of the commonly occurring nucleotides found in DNA and RNA (e.g., A, G, C, and T/U), including backbone or linkage modifications (e.g., peptide nucleic acid (PNA) or phosphothioate linkages) to increase resistance to nucleases, binding avidity, or to otherwise alter their pharmacokinetic properties. Exemplary modifications are set forth in U.S. Pat. Nos. 6,455,308; 4,469,863; 5,536,821; 5,541,306; 5,637,683; 5,637,684; 5,700,922; 5,717,083; 5,719,262; 5,739,308; 5,773,601; 5,886,165; 5,929,226; 5,977,296; 6,140,482; and in WIPO publications WO 00/56746 and WO 01/14398. Methods for synthesizing oligonucleotides comprising such analogs or derivatives are disclosed, for example, in the patent publications cited above, and in U.S. Pat. Nos. 6,455,308; 5,614,622; 5,739,314; 5,955,599; 5,962,674; 6,117,992; and in WO 00/75372.
A “blocking” antibody is one that inhibits or reduces a biological activity of the antigen it binds. In some embodiments, blocking antibodies substantially or completely inhibit the biological activity of the antigen. In some embodiments, the antigen is a NSP4.
The terms “anti-NSP4 antibody” and “an antibody that binds to NSP4” refer to an antibody that is capable of binding a NSP4 with sufficient affinity such that the antibody is useful as a diagnostic and/or therapeutic agent in targeting a NSP4. In one embodiment, the extent of binding of an anti-NSP4 antibody to an unrelated, non-NSP4 protein is less than about 10% of the binding of the antibody to NSP4 as measured, e.g., by a radioimmunoassay (RIA) or enzyme-linked immunosorbent assay (ELISA). In certain embodiments, an antibody that binds to a NSP4 has a dissociation constant (Kd) of ≤104, ≤100 nM, ≤10 nM, ≤1 nM, ≤0.1 nM, ≤0.01 nM, or ≤0.001 nM (e.g., 10−8M or less, e.g. from 10−8M to 10−13M, e.g., from 10−9M to 10−13 M). In certain embodiments, an anti-NSP4 antibody binds to an epitope of NSP4 that is conserved among NSP4 from different species.
The term “antibody” herein is used in the broadest sense and encompasses various antibody structures, including but not limited to monoclonal antibodies, polyclonal antibodies, multispecific antibodies (e.g., bispecific antibodies), and antibody fragments so long as they exhibit the desired antigen-binding activity.
An “antibody fragment” refers to a molecule other than an intact antibody that comprises a portion of an intact antibody that binds the antigen to which the intact antibody binds. Examples of antibody fragments include but are not limited to Fv, Fab, Fab′, Fab′-SH, F(ab′)2, diabodies, linear antibodies, single-chain antibody molecules (e.g., scFv), and multispecific antibodies formed from antibody fragments.
An “antibody that binds to the same epitope” as a reference antibody refers to an antibody that blocks binding of the reference antibody to its antigen in a competition assay by 50% or more, and conversely, the reference antibody blocks binding of the antibody to its antigen in a competition assay by 50% or more. An exemplary competition assay is provided herein.
The term “chimeric” antibody refers to an antibody in which a portion of the heavy and/or light chain is derived from a particular source or species, while the remainder of the heavy and/or light chain is derived from a different source or species.
The “class” of an antibody refers to the type of constant domain or constant region possessed by its heavy chain. There are five major classes of antibodies: IgA, IgD, IgE, IgG, and IgM, and several of these may be further divided into subclasses (isotypes), e.g., IgG1, IgG2, IgG3, IgG4, IgA1, and IgA2. The heavy chain constant domains that correspond to the different classes of immunoglobulins are called α, δ, ε, γ, and μ, respectively.
“Effector functions” refer to those biological activities attributable to the Fc region of an antibody, which vary with the antibody isotype. Examples of antibody effector functions include: C1q binding and complement dependent cytotoxicity (CDC); Fc receptor binding; antibody-dependent cell-mediated cytotoxicity (ADCC); phagocytosis; down regulation of cell surface receptors (e.g. B cell receptor); and B cell activation.
An “acceptor human framework” for the purposes herein is a framework comprising the amino acid sequence of a light chain variable domain (VL) framework or a heavy chain variable domain (VH) framework derived from a human immunoglobulin framework or a human consensus framework, as defined below. An acceptor human framework “derived from” a human immunoglobulin framework or a human consensus framework may comprise the same amino acid sequence thereof, or it may contain amino acid sequence changes. In some embodiments, the number of amino acid changes are 10 or less, 9 or less, 8 or less, 7 or less, 6 or less, 5 or less, 4 or less, 3 or less, or 2 or less. In some embodiments, the VL acceptor human framework is identical in sequence to the VL human immunoglobulin framework sequence or human consensus framework sequence.
“Affinity” refers to the strength of the sum total of noncovalent interactions between a single binding site of a molecule (e.g., an antibody) and its binding partner (e.g., an antigen). Unless indicated otherwise, as used herein, “binding affinity” refers to intrinsic binding affinity which reflects a 1:1 interaction between members of a binding pair (e.g., antibody and antigen). The affinity of a molecule X for its partner Y can generally be represented by the dissociation constant (Kd). Affinity can be measured by common methods known in the art, including those described herein. Specific illustrative and exemplary embodiments for measuring binding affinity are described in the following.
An “affinity matured” antibody refers to an antibody with one or more alterations in one or more hypervariable regions (HVRs), compared to a parent antibody which does not possess such alterations, such alterations resulting in an improvement in the affinity of the antibody for antigen.
The term “Fc region” herein is used to define a C-terminal region of an immunoglobulin heavy chain that contains at least a portion of the constant region. The term includes native sequence Fc regions and variant Fc regions. In one embodiment, a human IgG heavy chain Fc region extends from Cys226, or from Pro230, to the carboxyl-terminus of the heavy chain. However, the C-terminal lysine (Lys447) of the Fc region may or may not be present. Unless otherwise specified herein, numbering of amino acid residues in the Fc region or constant region is according to the EU numbering system, also called the EU index, as described in Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, Md., 1991.
“Framework” or “FR” refers to variable domain residues other than hypervariable region (HVR) residues. The FR of a variable domain generally consists of four FR domains: FR1, FR2, FR3, and FR4. Accordingly, the HVR and FR sequences generally appear in the following sequence in VH (or VL): FR1-H1(L1)-FR2-H2(L2)-FR3-H3(L3)-FR4.
The terms “full length antibody,” “intact antibody,” and “whole antibody” are used herein interchangeably to refer to an antibody having a structure substantially similar to a native antibody structure or having heavy chains that contain an Fc region as defined herein.
The terms “host cell,” “host cell line,” and “host cell culture” are used interchangeably and refer to cells into which exogenous nucleic acid has been introduced, including the progeny of such cells. Host cells include “transformants” and “transformed cells,” which include the primary transformed cell and progeny derived therefrom without regard to the number of passages. Progeny may not be completely identical in nucleic acid content to a parent cell, but may contain mutations. Mutant progeny that have the same function or biological activity as screened or selected for in the originally transformed cell are included herein.
A “human antibody” is one which possesses an amino acid sequence which corresponds to that of an antibody produced by a human or a human cell or derived from a non-human source that utilizes human antibody repertoires or other human antibody-encoding sequences. This definition of a human antibody specifically excludes a humanized antibody comprising non-human antigen-binding residues.
A “human consensus framework” is a framework which represents the most commonly occurring amino acid residues in a selection of human immunoglobulin VL or VH framework sequences. Generally, the selection of human immunoglobulin VL or VH sequences is from a subgroup of variable domain sequences. Generally, the subgroup of sequences is a subgroup as in Kabat et al., Sequences of Proteins of Immunological Interest, Fifth Edition, NIH Publication 91-3242, Bethesda Md. (1991), vols. 1-3. In one embodiment, for the VL, the subgroup is subgroup kappa I as in Kabat et al., supra. In one embodiment, for the VH, the subgroup is subgroup III as in Kabat et al., supra.
A “humanized” antibody refers to a chimeric antibody comprising amino acid residues from non-human HVRs and amino acid residues from human FRs. In certain embodiments, a humanized antibody will comprise substantially all of at least one, and typically two, variable domains, in which all or substantially all of the HVRs (e.g., CDRs) correspond to those of a non-human antibody, and all or substantially all of the FRs correspond to those of a human antibody. A humanized antibody optionally may comprise at least a portion of an antibody constant region derived from a human antibody. A “humanized form” of an antibody, e.g., a non-human antibody, refers to an antibody that has undergone humanization.
The term “hypervariable region” or “HVR,” as used herein, refers to each of the regions of an antibody variable domain which are hypervariable in sequence and/or form structurally defined loops (“hypervariable loops”). Generally, native four-chain antibodies comprise six HVRs; three in the VH (H1, H2, H3), and three in the VL (L1, L2, L3). HVRs generally comprise amino acid residues from the hypervariable loops and/or from the “complementarity determining regions” (CDRs), the latter being of highest sequence variability and/or involved in antigen recognition. An HVR region as used herein comprise any number of residues located within positions 24-36 (for L1), 46-56 (for L2), 89-97 (for L3), 26-35B (for H1), 47-65 (for H2), and 93-102 (for H3). Therefore, an HVR includes residues in positions described previously:
A) 24-34 (L1), 50-52 (L2), 91-96 (L3), 26-32 (H1), 53-55 (H2), and 96-101 (H3) (Chothia and Lesk, J. Mol. Biol. 196:901-917 (1987);
B) 24-34 of L1, 50-56 of L2, 89-97 of L3, 31-35B of H1, 50-65 of H2, and 95-102 of H3 (Kabat et al., Sequences of Proteins of Immunological Interest, 5th Ed. Public Health Service, National Institutes of Health, Bethesda, Md. (1991).
C) 30-36 (L1), 46-55 (L2), 89-96 (L3), 30-35 (H1), 47-58 (H2), 93-100a-j (H3) (MacCallum et al. J. Mol. Biol. 262:732-745 (1996).
With the exception of CDR1 in VH, CDRs generally comprise the amino acid residues that form the hypervariable loops. CDRs also comprise “specificity determining residues,” or “SDRs,” which are residues that contact antigen. SDRs are contained within regions of the CDRs called abbreviated-CDRs, or a-CDRs. Exemplary a-CDRs (a-CDR-L1, a-CDR-L2, a-CDR-L3, a-CDR-H1, a-CDR-H2, and a-CDR-H3) occur at amino acid residues 31-34 of L1, 50-55 of L2, 89-96 of L3, 31-35B of H1, 50-58 of H2, and 95-102 of H3. (See Almagro and Fransson, Front. Biosci. 13:1619-1633 (2008).) Unless otherwise indicated, HVR residues and other residues in the variable domain (e.g., FR residues) are numbered herein according to Kabat et al., supra.
The term “variable region” or “variable domain” refers to the domain of an antibody heavy or light chain that is involved in binding the antibody to antigen. The variable domains of the heavy chain and light chain (VH and VL, respectively) of a native antibody generally have similar structures, with each domain comprising four conserved framework regions (FRs) and three hypervariable regions (HVRs). (See, e.g., Kindt et al. Kuby Immunology, 6th ed., W.H. Freeman and Co., page 91 (2007).) A single VH or VL domain may be sufficient to confer antigen-binding specificity. Furthermore, antibodies that bind a particular antigen may be isolated using a VH or VL domain from an antibody that binds the antigen to screen a library of complementary VL or VH domains, respectively. See, e.g., Portolano et al., J. Immunol. 150:880-887 (1993); Clarkson et al., Nature 352:624-628 (1991).
An “individual” or “subject” is a mammal. Mammals include, but are not limited to, domesticated animals (e.g., cows, sheep, cats, dogs, and horses), primates (e.g., humans and non-human primates such as monkeys), rabbits, and rodents (e.g., mice and rats). In certain embodiments, the individual or subject is a human.
An “isolated” antibody is one which has been separated from a component of its natural environment. In some embodiments, an antibody is purified to greater than 95% or 99% purity as determined by, for example, electrophoretic (e.g., SDS-PAGE, isoelectric focusing (IEF), capillary electrophoresis) or chromatographic (e.g., ion exchange or reverse phase HPLC). For review of methods for assessment of antibody purity, see, e.g., Flatman et al., J. Chromatogr. B 848:79-87 (2007).
An “isolated” nucleic acid refers to a nucleic acid molecule that has been separated from a component of its natural environment. An isolated nucleic acid includes a nucleic acid molecule contained in cells that ordinarily contain the nucleic acid molecule, but the nucleic acid molecule is present extrachromosomally or at a chromosomal location that is different from its natural chromosomal location.
“Isolated nucleic acid encoding an anti-NSP4 antibody” refers to one or more nucleic acid molecules encoding antibody heavy and light chains (or fragments thereof), including such nucleic acid molecule(s) in a single vector or separate vectors, and such nucleic acid molecule(s) present at one or more locations in a host cell.
The term “monoclonal antibody” as used herein refers to an antibody obtained from a population of substantially homogeneous antibodies, i.e., the individual antibodies comprising the population are identical and/or bind the same epitope, except for possible variant antibodies, e.g., containing naturally occurring mutations or arising during production of a monoclonal antibody preparation, such variants generally being present in minor amounts. In contrast to polyclonal antibody preparations, which typically include different antibodies directed against different determinants (epitopes), each monoclonal antibody of a monoclonal antibody preparation is directed against a single determinant on an antigen. Thus, the modifier “monoclonal” indicates the character of the antibody as being obtained from a substantially homogeneous population of antibodies, and is not to be construed as requiring production of the antibody by any particular method. For example, the monoclonal antibodies to be used in accordance with the present invention may be made by a variety of techniques, including but not limited to the hybridoma method, recombinant DNA methods, phage-display methods, and methods utilizing transgenic animals containing all or part of the human immunoglobulin loci, such methods and other exemplary methods for making monoclonal antibodies being described herein.
A “naked antibody” refers to an antibody that is not conjugated to a heterologous moiety (e.g., a cytotoxic moiety) or radiolabel. The naked antibody may be present in a pharmaceutical formulation.
“Native antibodies” refer to naturally occurring immunoglobulin molecules with varying structures. For example, native IgG antibodies are heterotetrameric glycoproteins of about 150,000 daltons, composed of two identical light chains and two identical heavy chains that are disulfide-bonded. From N- to C-terminus, each heavy chain has a variable region (VH), also called a variable heavy domain or a heavy chain variable domain, followed by three constant domains (CH1, CH2, and CH3). Similarly, from N- to C-terminus, each light chain has a variable region (VL), also called a variable light domain or a light chain variable domain, followed by a constant light (CL) domain. The light chain of an antibody may be assigned to one of two types, called kappa (κ) and lambda (λ), based on the amino acid sequence of its constant domain.
The term “package insert” is used to refer to instructions customarily included in commercial packages of therapeutic products, that contain information about the indications, usage, dosage, administration, combination therapy, contraindications and/or warnings concerning the use of such therapeutic products.
“Percent (%) amino acid sequence identity” with respect to a reference polypeptide sequence is defined as the percentage of amino acid residues in a candidate sequence that are identical with the amino acid residues in the reference polypeptide sequence, after aligning the sequences and introducing gaps, if necessary, to achieve the maximum percent sequence identity, and not considering any conservative substitutions as part of the sequence identity. Alignment for purposes of determining percent amino acid sequence identity can be achieved in various ways that are within the skill in the art, for instance, using publicly available computer software such as BLAST, BLAST-2, ALIGN or Megalign (DNASTAR) software. Those skilled in the art can determine appropriate parameters for aligning sequences, including any algorithms needed to achieve maximal alignment over the full length of the sequences being compared. For purposes herein, however, % amino acid sequence identity values are generated using the sequence comparison computer program ALIGN-2. The ALIGN-2 sequence comparison computer program was authored by Genentech, Inc., and the source code has been filed with user documentation in the U.S. Copyright Office, Washington D.C., 20559, where it is registered under U.S. Copyright Registration No. TXU510087. The ALIGN-2 program is publicly available from Genentech, Inc., South San Francisco, Calif., or may be compiled from the source code. The ALIGN-2 program should be compiled for use on a UNIX operating system, including digital UNIX V4.0D. All sequence comparison parameters are set by the ALIGN-2 program and do not vary.
In situations where ALIGN-2 is employed for amino acid sequence comparisons, the % amino acid sequence identity of a given amino acid sequence A to, with, or against a given amino acid sequence B (which can alternatively be phrased as a given amino acid sequence A that has or comprises a certain % amino acid sequence identity to, with, or against a given amino acid sequence B) is calculated as follows:100 times the fraction X/Y where X is the number of amino acid residues scored as identical matches by the sequence alignment program ALIGN-2 in that program's alignment of A and B, and where Y is the total number of amino acid residues in B. It will be appreciated that where the length of amino acid sequence A is not equal to the length of amino acid sequence B, the % amino acid sequence identity of A to B will not equal the % amino acid sequence identity of B to A. Unless specifically stated otherwise, all % amino acid sequence identity values used herein are obtained as described in the immediately preceding paragraph using the ALIGN-2 computer program.
The term “pharmaceutical formulation” refers to a preparation which is in such form as to permit the biological activity of an active ingredient contained therein to be effective, and which contains no additional components which are unacceptably toxic to a subject to which the formulation would be administered.
A “pharmaceutically acceptable carrier” refers to an ingredient in a pharmaceutical formulation, other than an active ingredient, which is nontoxic to a subject. A pharmaceutically acceptable carrier includes, but is not limited to, a buffer, excipient, stabilizer, or preservative.
As used herein, the term “treatment” refers to clinical intervention designed to alter the natural course of the individual or cell being treated during the course of clinical pathology. Desirable effects of treatment include decreasing the rate of disease progression, ameliorating or palliating the disease state, and remission or improved prognosis. An individual is successfully “treated”, for example, if one or more symptoms associated with the disorder are mitigated or eliminated. For example, an individual is successfully “treated” if one or more symptoms associated with an inflammatory disease are mitigated or eliminated, including, but are not limited to, decreasing symptoms resulting from the disease, increasing the quality of life of those suffering from the disease, decreasing the dose of other medications required to treat the disease, delaying the progression of the disease, and/or prolonging survival of individuals
As used herein, “in conjunction with” refers to administration of one treatment modality in addition to another treatment modality. As such, “in conjunction with” refers to administration of one treatment modality before, during or after administration of the other treatment modality to the individual.
As used herein, the term “prevention” includes providing prophylaxis with respect to occurrence or recurrence of a disorder in an individual. An individual may be predisposed to a disorder, susceptible to a disorder, or at risk of developing a disorder, but has not yet been diagnosed with the disorder. In some embodiments, NSP4 inhibitors described herein are used to delay development of the disorder. In some embodiments, the NSP4 inhibitors described herein prevent inflammation and/or vascular leakage.
As used herein, an individual “at risk” of developing a disorder may or may not have detectable disease or symptoms of disease, and may or may not have displayed detectable disease or symptoms of disease prior to the treatment methods described herein. “At risk” denotes that an individual has one or more risk factors, which are measurable parameters that correlate with development of the disorder, as known in the art. An individual having one or more of these risk factors has a higher probability of developing the disorder than an individual without one or more of these risk factors.
An “effective amount” refers to at least an amount effective, at dosages and for periods of time necessary, to achieve the desired or indicated effect, including a therapeutic or prophylactic result. An effective amount can be provided in one or more administrations.
A “therapeutically effective amount” is at least the minimum concentration required to effect a measurable improvement of a particular disorder. A therapeutically effective amount herein may vary according to factors such as the disease state, age, sex, and weight of the patient, and the ability of the antibody to elicit a desired response in the individual. A therapeutically effective amount is also one in which any toxic or detrimental effects of the antibody are outweighed by the therapeutically beneficial effects. A “prophylactically effective amount” refers to an amount effective, at the dosages and for periods of time necessary, to achieve the desired prophylactic result. Typically but not necessarily, since a prophylactic dose is used in subjects prior to or at the earlier stage of disease, the prophylactically effective amount can be less than the therapeutically effective amount.
The term “vector,” as used herein, refers to a nucleic acid molecule capable of propagating another nucleic acid to which it is linked. The term includes the vector as a self-replicating nucleic acid structure as well as the vector incorporated into the genome of a host cell into which it has been introduced. Certain vectors are capable of directing the expression of nucleic acids to which they are operatively linked. Such vectors are referred to herein as “expression vectors.”
“Antibody-dependent cell-mediated cytotoxicity” or “ADCC” refers to a form of cytotoxicity in which secreted Ig bound onto Fc receptors (FcRs) present on certain cytotoxic cells (e.g., natural killer (NK) cells, neutrophils and macrophages) enable these cytotoxic effector cells to bind specifically to an antigen-bearing target cell and subsequently kill the target cell with cytotoxins. The antibodies “arm” the cytotoxic cells and are required for killing of the target cell by this mechanism. The primary cells for mediating ADCC, NK cells, express FcγRIII only, whereas monocytes express FcγRI, FcγRII and FcγRIII. Fc expression on hematopoietic cells is summarized in Table 3 on page 464 of Ravetch and Kinet, Annu. Rev. Immunol. 9: 457-92 (1991). To assess ADCC activity of a molecule of interest, an in vitro ADCC assay, such as that described in U.S. Pat. No. 5,500,362 or 5,821,337 may be performed. Useful effector cells for such assays include peripheral blood mononuclear cells (PBMC) and natural killer (NK) cells. Alternatively, or additionally, ADCC activity of the molecule of interest may be assessed in vivo, e.g., in an animal model such as that disclosed in Clynes et al., PNAS USA 95:652-656 (1998).
“Complement dependent cytotoxicity” or “CDC” refers to the lysis of a target cell in the presence of complement. Activation of the classical complement pathway is initiated by the binding of the first component of the complement system (C1q) to antibodies (of the appropriate subclass) which are bound to their cognate antigen. To assess complement activation, a CDC assay, e.g., as described in Gazzano-Santoro et al., J. Immunol. Methods 202: 163 (1996), may be performed.
The term “about” as used herein refers to the usual error range for the respective value readily known to the skilled person in this technical field. Reference to “about” a value or parameter herein includes (and describes) embodiments that are directed to that value or parameter per se.
As used herein and in the appended claims, the singular forms “a,” “an,” and “the” include plural reference unless the context clearly indicates otherwise. For example, reference to an “antibody” is a reference to from one to many antibodies, such as molar amounts, and includes equivalents thereof known to those skilled in the art, and so forth.
It is understood that aspect and embodiments of the invention described herein include “comprising,” “consisting,” and “consisting essentially of” aspects and embodiments.
A. NSP4 Inhibitors
Provided herein are NSP4 inhibitors which block, inhibit, reduce, or interfere with the enzymatic activity of a NSP4 in vitro, in situ, and/or in vivo. A NSP4 inhibitor is a molecule having one or more of the following characteristics: (1) inhibits or reduces NSP4 enzymatic activity; (2) the ability to inhibit or reduce binding of a NSP4 to its substrate(s); (3) the ability to increase clearance of a NSP4 (e.g., decrease extracellular levels of released NSP4); (4) the ability to inhibit or reduce NSP4 release from neutrophils, basophils and/or eosinophils; (5) the ability to reduce NSP4 expression (such as at the mRNA level and/or at protein level) in neutrophils, basophils and/or eosinophils; (6) the ability to interact, bind, or recognize a precursor and/or mature form of a NSP4; (7) the ability to enhance inactivation of a NSP4 by a protease inhibitor (e.g., α1-antitrypsin); (8) the ability to specifically interact with or bind to a NSP4 and not with neutrophil elastase (NE), cathepsin G (CG), or proteinase 3 (PR3) activity; (9) the ability to treat, ameliorate, or prevent any aspect of a neutrophil-mediated disease or disorder described or contemplated herein; and (10) the ability to treat, ameliorate, or prevent any aspect of a disease or disorder mediated by granulocytes described or contemplated herein.
Exemplary NSP4 inhibitors that inhibit the production of a NSP4 include agents such as, but not limited to, compounds that specifically inhibit NSP4 synthesis and/or release, antisense molecules directed to a NSP4, or a short interfering RNA (siRNA) molecule directed to a nucleic acid encoding a NSP4. Additional exemplary NSP4 inhibitors that inhibit NSP4 protease activity include agents such as, but not limited to, anti-NSP4 antibodies that specifically bind to a NSP4 (e.g., a precursor NSP4 and/or a mature NSP4), protease inhibitors (e.g., serine protease inhibitors), compounds that specifically inhibit NSP4 catalytic activity such as small molecule inhibitors and/or peptide inhibitors, compounds that specifically inhibit a NSP4 binding to its substrate(s), a NSP4 structural analog, or an RNA or DNA aptamer that binds a NSP4. In some embodiments, a NSP4 inhibitor is an allosteric inhibitor. In some embodiments, a NSP4 inhibitor is an orthosteric inhibitor.
In certain embodiments, a NSP4 inhibitor is a protease inhibitor that reduces the catalytic activity of a NSP4. In certain embodiments, a protease inhibitor contemplated herein reduces levels of NSP4 protease activity by reducing active NSP4 protein concentrations. In some embodiments, the NSP4 inhibitor is a serine protease inhibitor, referred to as a serpin, well known in the art as a group of proteins capable of inhibiting protease activity. For example serpin proteins include, but are not limited to, α1-antitrypsin, C1 inhibitor, heparin-activated antithrombin, and α2-antiplasmin. Methods for making or purifying serpin inhibitors are well known in the art, including, but are not limited to, recombinant protein expression, or immunoaffinity purification.
In certain embodiments, the NSP4 inhibitor is a small molecule inhibitor (e.g., peptide inhibitor), including, but not limited to, small peptides or peptide-like molecules, soluble peptides, and synthetic non-peptidyl organic or inorganic compounds. A small molecule inhibitor may have a molecular weight of any of about 100 to about 20,000 daltons (Da), about 500 to about 15,000 Da, about 1000 to about 10,000 Da. For example, small molecule inhibitors contemplated herein include, but are not limited to, amastatin hydrochloride hydrate, antipain dihydrochloride, aprotinin, elastatinal, epiamastatin hydrochloride, histatin 5, leupeptin hemisulfate, leupeptin trifluoroacetate, leupeptin hydrochloride, pepstatin, or phenylmethanesulfonylfluoride. In some embodiments, the small molecule inhibitor is a macrocyclic inhibitor such as, but not limited to, macrocyclic acylsulfonamides or small molecule inhibitors that are known to inhibit the HCV NS3/4A protease. Methods for making and testing the inhibitory effect a small molecule has on catalytic activity is well known in the art and such methods can be used to assess the effect of the small molecule inhibitor on NSP4 activity. For example, a library of NSP4 inhibitor candidates can be screened for decreasing NSP4 protease activity by incubating each inhibitor candidate with active NSP4 in the presence of a fluorogenic peptide substrate in a buffer. Upon NSP4 cleavage, said fluorogenic peptide substrate will fluoresce and NSP4 activity in the presence of each inhibitor candidate can be measured by techniques well known in the art. Exemplary fluorogenic peptide substrates that can used in assays described herein include, but are not limited to, a fluorogenic peptide substrate with the amino acid sequence 1IR{Arg(Me)}SSYSFKK10 or 1IR{Arg}SSYSFKK10.
In certain embodiments, the NSP4 inhibitor is an anti-NSP4 antibody that binds or physically interacts with a NSP4. The antibody may have nanomolar or even picomolar affinities for the target antigen (e.g., NSP4). In certain embodiments, the Kd of the antibody is about 0.05 to about 100 nM. For example, Kd of the antibody is any of about 100 nM, about 50 nM, about 10 nM, about 1 nM, about 500 pM, about 100 pM, or about 50 pM to any of about 2 pM, about 5 pM, about 10 pM, about 15 pM, about 20 pM, or about 40 pM. Methods for the preparation and selection of antibodies that interact and/or bind with specificity to a NSP4 are described herein.
In certain embodiments, the NSP4 inhibitor comprises at least one antisense molecule capable of blocking or decreasing the expression of a functional NSP4 by targeting nucleic acids encoding a NSP4. Nucleic acid sequences of NSP4 are known in the art. For example, a human NSP4 can have a nucleic acid sequence as shown in NCBI Accession number NM_214710 and a mouse NSP4 can have a nucleic acid sequence as shown in NCBI Accession number NM_001042710. Methods are known for the preparation of antisense oligonucleotide molecules and such methods can be used to prepare antisense oligonucleotides that will specifically bind one or more of a NSP4 mRNA without cross-reacting with other polynucleotides. Exemplary sites of targeting include, but are not limited to, the initiation codon, the 5′ regulatory regions, the coding sequence, including any conserved consensus regions, and the 3′ untranslated region. In certain embodiments, the antisense oligonucleotides are about 10 to about 100 nucleotides in length, about 15 to about 50 nucleotides in length, about 18 to about 25 nucleotides in length, or more. In certain embodiments, the oligonucleotides further comprise chemical modifications to increase nuclease resistance and the like, such as, for example, phosphorothioate linkages and 2′-O-sugar modifications known to those of ordinary skill in the art.
In certain embodiments, the NSP4 inhibitor comprises at least one siRNA molecule capable of blocking or decreasing the expression of a functional NSP4 by targeting nucleic acids encoding a NSP4. Methods for preparation of siRNA molecules are well known in the art and such methods can be used to prepare siRNA molecules that will specifically target a NSP4 mRNA without cross-reacting with other polynucleotides. siRNA molecules may be generated by methods such as by typical solid phase oligonucleotide synthesis, and often will incorporate chemical modifications to increase half-life and/or efficacy of the siRNA agent, and/or to allow for a more robust delivery formulation. Alternatively, siRNA molecules are delivered using a vector encoding an expression cassette for intracellular transcription of siRNA.
In certain embodiments, the NSP4 inhibitor is an RNA or DNA aptamer that binds or physically interacts with a NSP4, and blocks interactions between a NSP4 and its substrate(s). In certain embodiments, the aptamer comprises at least one RNA or DNA aptamer that binds to a mature form of NSP4. In certain embodiments, the aptamer comprises at least one RNA or DNA aptamer that binds to a precursor form of NSP4.
In certain embodiments, the NSP4 inhibitor comprises at least one NSP4 structural analog. The term NSP4 structural analog refers to compounds that have a similar three dimensional structure as part of that of a NSP4 (e.g., a precursor and/or mature form of NSP4) and which bind to a NSP4 substrate under physiological conditions in vitro or in vivo, wherein the binding at least partially inhibits a NSP4 biological activity. Suitable NSP4 structural analogs can be designed and synthesized through molecular modeling of NSP4 binding to its substrate. The NSP4 structural analogs can be monomers, dimers, or higher order multimers in any desired combination of the same or different structures to obtain improved affinities and biological effects. In some embodiments, the NSP4 inhibitor binds to or interacts with an amino acid sequence of a NSP4 as shown in
NSP4 inhibitors may be identified and/or characterized using methods well known in the art, such as, for example, radiolabeled inhibitor assays, optical assays, protein binding assays, biochemical screening assays, immunoassays, mass shift measurement assays, fluorescence assays, and/or fluorogenic peptide cleavage assays.
In certain embodiments, NSP4 inhibitors can be identified by techniques well known in the art for detecting the presence of a NSP4 inhibitor candidate's interaction and/or binding affinity to a NSP4.
In certain embodiments, NSP4 inhibitors that interact with a NSP4 can be identified using a radiolabeled inhibitor assay. For example, a known amount of a radiolabeled inhibitor candidate may be incubated with a known amount of immobilized NSP4 and a buffer. Subsequently, the immobilized NSP4 may be washed with a buffer and the immobilized NSP4 may be measured for the remaining presence of the radiolabeled NSP4 inhibitor candidate using techniques known in the art, such as, for example, a gamma counter. A measurement indicating the presence of a radiolabeled substance may indicate the radiolabeled inhibitor candidate is capable of interacting with and/or binding to NSP4.
In certain embodiments, a NSP4 inhibitor that interacts with a NSP4 may be identified using an optical technique. An exemplary optical technique to detect an inhibitor of a NSP4 may include, e.g., attaching NSP4 to a colorimetric resonant grafting surface, thereby shifting the wavelength of reflected light due to changes in the optical path the light must take, and subsequently measuring additional changes in the wavelength of reflected light when an inhibitor candidate is allowed to interact with NSP4. For example, no change in the measured wavelength of reflected light when an inhibitor is incubated with NSP4 may indicate that the inhibitor candidate is unable to interact with NSP4. Changes in the measured wavelength of reflected light when an inhibitor candidate is incubated with NSP4 may indicate that the inhibitor candidate is capable of binding and/or interacting with NSP4.
In certain embodiments, a NSP4 inhibitor that interacts with a NSP4 may be identified using a protein binding assay. An exemplary protein binding assay to detect a NSP4 inhibitor may include, e.g., co-immunoprecipitation of a NSP4 in the presence of the inhibitor candidate. For example, a NSP4 may be incubated with the inhibitor candidate in buffer, and subsequently an immobilized molecule specific to capture a NSP4, such as, for example, an anti-NSP4 antibody, may be used to capture NSP4 in the presence of the inhibitor candidate and bind the NSP4, potentially with an interacting inhibitor candidate, during wash procedures known in the art. Subsequently, NSP4, potentially with an interacting inhibitor candidate, can be released and the presence of an inhibitor candidate may be detected, based on the inhibitor candidate characteristics, by techniques, such as, for example, mass spectrometry and/or Western blot.
In certain embodiments, a NSP4 inhibitor that interacts with a NSP4 may be identified using a biochemical and/or an immunoassay assay well known in the art. An exemplary technique may include, e.g., an assay to quantitatively measure changes in NSP4 concentration and/or protein half-life using techniques, such as, for example, Western blot. For example, an inhibitor candidate may be incubated with a sample containing a NSP4, and subsequently NSP4 protein quantity may be measured at points during a time course study. Changes in protein quantity and/or protein half-life in comparison to a control treatment may indicate that the NSP4 inhibitor candidate may be capable of altering NSP4 half-life and/or activity.
In certain embodiments, a mass shift measurement assay may be used to identify a NSP4 inhibitor that interacts with a NSP4. An exemplary mass shift measurement assay may include, e.g., detecting the presence of a strongly and/or covalently bound NSP4 inhibitor by measuring a change in NSP4 mass when the inhibitor candidate is interacting with NSP4 by using instruments, such as, but not limited to, a mass spectrometer. For example, a mass shift assay may be performed on a whole protein and/or a peptide-based analysis, depending on the nature of the inhibitor candidate interaction. Detection of a mass shift correlating with the addition of said inhibitor candidate to NSP4 may indicate that the inhibitor candidate may be capable of inhibiting a NSP4. Additionally, an exemplary mass shift measurement assay may include, e.g., detecting the addition of mass to NSP4 correlating with the respective inhibitor candidate mass when the inhibitor candidate is interacting with NSP4 using techniques, such as, for example, surface plasmon resonance. For example, the change in the refractive index of light may be measured and correlated with a change in mass of NSP4 attached to a sensor surface.
In certain embodiments, a chemical cross-linking assay may be used to identify a NSP4 inhibitor that interacts with a NSP4. For example, an inhibitor candidate may be incubated with a NSP4, in vivo or in vitro, with a molecule cross-linker capable of covalently linking an inhibitor candidate interacting with NSP4 to said NSP4 molecule. Subsequently, techniques, such as, but not limited to, mass spectrometry and/or Western blot, may be used to identify an inhibitor candidate that may be capable of inhibiting NSP4. For example, detection of NSP4 covalently cross-linked with the inhibitor candidate may indicate that the inhibitor candidate may be capable of inhibiting NSP4.
In certain embodiments, NSP4 inhibitors that interact with a NSP4 may be identified using a fluorescence inhibitor assay. For example, a known amount of a fluorescent inhibitor candidate may be incubated with a known amount of immobilized NSP4 and a buffer. Subsequently, the immobilized NSP4 may be washed with a buffer and the immobilized NSP4 may be measured for the remaining presence of a fluorescent NSP4 inhibitor candidate using techniques known in the art, such as, but not limited to, fluorescence detection. A measurement indicating the presence of a fluorescent substance may indicate the fluorescent inhibitor candidate is capable of interacting with and/or binding to NSP4.
Assays known in the art and described herein (e.g., Example 3) can be used for identifying and testing biological activities of NSP4 inhibitors. In some embodiments, assays for testing NSP4 inhibitors ability for blocking a NSP4 activity are provided. An exemplary test for biological activity may include, e.g., providing a NSP4 (e.g., human NSP4) in a mixture with a NSP4 inhibitor and incubating the mixture with one or more internally-quenched fluorogenic peptide substrate and measuring the fluorescence intensity with an instrument, such as, for example, a spectrophotometer. An increase in fluorescence in the presence of a NSP4 inhibitor would indicate the NSP4 inhibitor is unable to block NSP4 activity, while a lack of increase in fluorescence in the presence of a NSP4 inhibitor would indicate the NSP4 inhibitor blocks NSP4 activity. Exemplary fluorogenic peptide substrates that can used in assays described herein include, but are not limited to, a fluorogenic peptide substrate with the amino acid sequence 1IR{Arg(Me)}SSYSFKK10 or 1IR{Arg}SSYSFKK10.
In some embodiments, the NSP4 inhibitor may block at least about any of 50%, 60%, 70%, 80%, 85%, 90%, 95% and 100% of NSP4 activity in any of these assays.
In one aspect, the invention provides isolated antibodies that bind to a NSP4. In certain embodiments, an anti-NSP4 antibody has one or more of the following characteristics: (1) binds a NSP4 (e.g., a human NSP4) and inhibits or reduces NSP4 protease activity; (2) blocks binding of a NSP4 to its peptide substrate(s); (3) binds to a NSP4 of a mouse and/or a human; (4) binds to an inactive and/or mature form of NSP4; (5) binds to a complex formed between a NSP4 and a protease inhibitor (e.g., α1-antitrypsin); (6) enhances inactivation of a NSP4 by a protease inhibitor (e.g., α1-antitrypsin); and (7) reacts specifically with a NSP4 and not with neutrophil elastase (NE), cathepsin G (CG), or proteinase 3 (PR3).
In another aspect, the invention provides an isolated anti-NSP4 antibody that can be classified into one of the following subclasses: 1) Binds to mature and precursor forms of a mouse NSP4 but not to mature and precursor forms of a human NSP4; 2) Binds to mature and precursor forms of a human NSP4 but not to mature and precursor forms of a mouse NSP4; 3) Binds to a mature form of a mouse NSP4 but not to a precursor form of a mouse NSP4; 4) Binds to a mature form of a human NSP4 but not to a precursor form of a human NSP4; 5) Binds to mature forms of a mouse NSP4 and a human NSP4 but not to precursor forms of a mouse NSP4 and a human NSP4; and 6) Binds to mature and precursor forms of a mouse NSP4 and a human NSP4.
Described herein is the finding that NSP4 includes an active site and a heparin binding site (see, e.g.,
In one aspect, the invention provides an isolated anti-NSP4 antibody comprising at least one, two, three, four, five, or six HVRs selected from (i) an HVR-L1 comprising the amino acid sequence of SEQ ID NO:10; (ii) an HVR-L2 comprising the amino acid sequence of SEQ ID NO:11; (iii) an HVR-L3 comprising the amino acid sequence of SEQ ID NO:12; (iv) an HVR-H1 comprising the amino acid sequence of SEQ ID NO:1, 4, or 7; (v) an HVR-H2 comprising the amino acid sequence of SEQ ID NO:2, 5, or 8; and (vi) an HVR-H3 comprising the amino acid sequence of SEQ ID NO:3, 6, or 9.
In one embodiment, the isolated anti-NSP4 antibody comprises a heavy chain variable region comprising an HVR-H1, an HVR-H2, and an HVR-H3 sequence, wherein:
In one embodiment, the isolated anti-NSP4 antibody comprises a heavy chain variable region comprising an HVR-H1, an HVR-H2, and an HVR-H3 sequence, wherein:
In one embodiment, the isolated anti-NSP4 antibody comprises a heavy chain variable region comprising an HVR-H1, an HVR-H2, and an HVR-H3 sequence, wherein:
In some embodiments, a heavy chain polypeptide provided herein is further combined with a variable region light chain comprising an HVR-L1, an HVR-L2, and an HVR-L3, wherein:
In another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3, wherein:
and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3, wherein:
In another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
(c) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3, wherein:
and/or
(d) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3, wherein:
In another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
(e) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3, wherein:
and/or
(f) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3, wherein:
In a still further specific aspect, the antibody further comprises a human or murine constant region. In a still further aspect, the human constant region is selected from the group consisting of IgG1, IgG2, IgG2, IgG3, and IgG4. In a still further specific aspect, the human constant region is IgG1. In a still further aspect, the murine constant region is selected from the group consisting of IgG1, IgG2A, IgG2B, and IgG3. In a still further aspect, the murine constant region is IgG2A. In a still further specific aspect, the antibody has reduced or minimal effector function.
In yet another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
In yet another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
In yet another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
In a still further embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
(a) the heavy chain sequence has at least 85% sequence identity to the heavy chain sequence:
and/or
(b) the light chain sequence has at least 85% sequence identity to the light chain sequence:
In a still another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
(a) the heavy chain sequence has at least 85% sequence identity to the heavy chain sequence:
and/or
(b) the light chain sequence has at least 85% sequence identity to the light chain sequence:
In a still another embodiment, provided is an isolated anti-NSP4 antibody or antigen binding fragment comprising a heavy chain variable region and a light chain variable region, wherein:
(a) the heavy chain sequence has at least 85% sequence identity to the heavy chain sequence:
and/or
(b) the light chain sequence has at least 85% sequence identity to the light chain sequence:
In any of the above embodiments, an anti-NSP4 antibody is an isolated antibody. In any of the above embodiments, an anti-NSP4 antibody is humanized. In one embodiment, an anti-NSP4 antibody comprises HVRs as in any of the above embodiments and HVRs (including HVRs comprising Kabat CDR, Chothia CDR, or Contact CDR sequences) shown in
In certain embodiments, an anti-NSP4 antibody described herein comprises HVRs as defined by Kabat, e.g., an anti-NSP4 antibody comprising CDR-H1, CDR-H2, CDR-H3, CDR-L1, CDR-L2, and CDR-L3, wherein each of the CDRs is defined by Kabat as further described herein. In certain embodiments, an anti-NSP4 antibody described herein comprises HVRs as defined by Chothia, e.g., an anti-NSP4 antibody comprising CDR-H1, CDR-H2, CDR-H3, CDR-L1, CDR-L2, and CDR-L3, wherein each of the CDRs is defined by Chothia as further described herein. In certain embodiments, an anti-NSP4 antibody described herein comprises HVRs as defined by Contact CDR sequences, e.g., an anti-NSP4 antibody comprising CDR-H1, CDR-H2, CDR-H3, CDR-L1, CDR-L2, and CDR-L3, wherein each of the CDRs is defined by Contact CDR sequences as further described herein.
In another aspect, an anti-NSP4 antibody is provided, wherein the antibody comprises a light chain variable domain (VL) having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity to the amino acid sequence of SEQ ID NO:16. In certain embodiments, a VL sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identity contains substitutions (e.g., conservative substitutions), insertions, or deletions relative to the reference sequence, but an anti-NSP4 antibody comprising that sequence retains the ability to bind to a NSP4. In certain embodiments, a total of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acids have been substituted, inserted and/or deleted in SEQ ID NO:16. In certain embodiments, the substitutions, insertions, or deletions occur in regions outside the HVRs (i.e., in the FRs). Optionally, the anti-NSP4 antibody comprises the VL sequence of SEQ ID NO:16, including post-translational modifications of that sequence.
In another aspect, an anti-NSP4 antibody comprises a heavy chain variable domain (VH) sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity to the amino acid sequence selected from the group consisting of SEQ ID NOS:13-15. In certain embodiments, a VH sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identity contains substitutions (e.g., conservative substitutions), insertions, or deletions relative to the reference sequence, but an anti-NSP4 antibody comprising that sequence retains the ability to bind to NSP4. In certain embodiments, a total of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acids have been substituted, inserted and/or deleted in any of SEQ ID NO: 13-15. In certain embodiments, substitutions, insertions, or deletions occur in regions outside the HVRs (i.e., in the FRs). Optionally, the anti-NSP4 antibody comprises the VH sequence in any of SEQ ID NOS:13-15, including post-translational modifications of that sequence.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNDIS (SEQ ID NO:50), GSISPDNGDTNYADSVKG (SEQ ID NO:51), and RDDVPAVFTSAMDY (SEQ ID NO:52), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSX1X2X3PX4T (SEQ ID NO:95), wherein X1 is Y or A; X2 is T, G, or D; X3 is T or F; and X4 is P or L, respectively.
In some embodiments, the anti-NSP4 antibody of the preceding paragraph comprises a light chain comprising an HVR-L3 sequence having at least 85% sequence identity to a sequence selected from SEQ ID NO:12 and 92-94.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNDIS (SEQ ID NO:50), GSISPDNGDTNYADSVKG (SEQ ID NO:51), and (SEQ ID NO:52), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:78 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNDIS (SEQ ID NO:50), GSISPDNGDTNYADSVKG (SEQ ID NO:51), and RDDVPAVFTSAMDY (SEQ ID NO:52), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYGFPLT (SEQ ID NO:92), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:78 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:102.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNDIS (SEQ ID NO:50), GSISPDNGDTNYADSVKG (SEQ ID NO:51), and RDDVPAVFTSAMDY (SEQ ID NO:52), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYDFPLT (SEQ ID NO:93), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:78 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:103.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNDIS (SEQ ID NO:50), GSISPDNGDTNYADSVKG (SEQ ID NO:51), and (SEQ ID NO:52), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSAGFPLT (SEQ ID NO:94), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising the sequence of SEQ ID NO:78 and/or a light chain variable region comprising the sequence of SEQ ID NO:104.
In some embodiments, provided herein is an anti-NSP4 antibody comprising an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to GSISPDNGDTNYADSVKG (SEQ ID NO:51), RDDVPAVFTSAMDY (SEQ ID NO:52), and QQSX1X2X3PX4T (SEQ ID NO:95), wherein X1 is Y or A; X2 is T, G, or D; X3 is T or F; and X4 is P or L, respectively.
In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to GSISPDNGDTNYADSVKG (SEQ ID NO:51), RDDVPAVFTSAMDY (SEQ ID NO:52), and QQSYTTPPT (SEQ ID NO:12), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to GSISPDNGDTNYADSVKG (SEQ ID NO:51), RDDVPAVFTSAMDY (SEQ ID NO:52), and QQSYGFPLT (SEQ ID NO:92), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to GSISPDNGDTNYADSVKG (SEQ ID NO:51), RDDVPAVFTSAMDY (SEQ ID NO:52), and QQSYDFPLT (SEQ ID NO:93), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to GSISPDNGDTNYADSVKG (SEQ ID NO:51), RDDVPAVFTSAMDY (SEQ ID NO:52), and QQSAGFPLT (SEQ ID NO:94), respectively.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), and KRHLHNVAFDY (SEQ ID NO:87), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQAYSAPPT (SEQ ID NO:96), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:105 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:106.
In some embodiments, provided herein is an anti-NSP4 antibody comprising an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), KRHLHNVAFDY (SEQ ID NO:87), and QQAYSAPPT (SEQ ID NO:96), respectively.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66) or AWIPTAGGNTYYADSVKG (SEQ ID NO:88), and X1X2X3FHNVAFDY (SEQ ID NO:91), wherein X1 is K or R; X2 is S, G, or V; and X3 is L or F, respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQX1X2 X3X4PPT (SEQ ID NO:101), wherein X1 is S, A, N, or T; X2 is Y, N, or F; X3 is T, S, or N; and X4 is T, A, or S, respectively.
In some embodiments, the anti-NSP4 antibody of the preceding paragraph comprises a heavy chain comprising an HVR-H3 sequence having at least 85% sequence identity to a sequence selected from SEQ ID NO:67, 89, and 90. In some embodiments, the anti-NSP4 antibody of the preceding paragraph comprises a light chain comprising an HVR-L3 sequence having at least 85% sequence identity to a sequence selected from SEQ ID NO:12 and 97-100.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), KSLFHNVAFDY (SEQ ID NO:67), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:83 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWIPTAGGNTYYADSVKG (SEQ ID NO:88), and KSLFHNVAFDY (SEQ ID NO:67), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTAPPT (SEQ ID NO:97), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:107 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:108.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), and KSLFHNVAFDY (SEQ ID NO:67), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQANSTPPT (SEQ ID NO:98), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:83 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:109.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), and RGLFHNVAFDY (SEQ ID NO:89), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTAPPT (SEQ ID NO:97), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:110 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:108.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), and RVFFHNVAFDY (SEQ ID NO:90), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQNFSSPPT (SEQ ID NO:99), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:111 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:112.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), and KSLFHNVAFDY (SEQ ID NO:67), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTAPPT (SEQ ID NO:97), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:83 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:108.
In some embodiments, the antibody comprises a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), RGLFHNVAFDY (SEQ ID NO:89), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQTYNAPPT (SEQ ID NO:100), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:110 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:113.
In some embodiments, provided herein is an anti-NSP4 antibody comprising an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66) or AWIPTAGGNTYYADSVKG (SEQ ID NO:88), X1X2X3FHNVAFDY (SEQ ID NO:91), wherein X1 is K or R; X2 is S, G, or V; and X3 is L or F; and QQX1X2 X3X4PPT (SEQ ID NO:101), wherein X1 is S, A, N, or T; X2 is Y, N, or F; X3 is T, S, or N; and X4 is T, A, or S; respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), KSLFHNVAFDY (SEQ ID NO:67), and QQSYTTPPT (SEQ ID NO:12), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWIPTAGGNTYYADSVKG (SEQ ID NO:88), KSLFHNVAFDY (SEQ ID NO:67), and QQSYTAPPT (SEQ ID NO:97), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), KSLFHNVAFDY (SEQ ID NO:67), and QQANSTPPT (SEQ ID NO:98), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), RGLFHNVAFDY (SEQ ID NO:89), and QQSYTAPPT (SEQ ID NO:97), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), RVFFHNVAFDY (SEQ ID NO:90), and QQNFSSPPT (SEQ ID NO:99), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), KSLFHNVAFDY (SEQ ID NO:67), and QQSYTAPPT (SEQ ID NO:97), respectively. In some embodiments, the antibody comprises an HVR-H2, an HVR-H3, and an HVR-L3 sequence having at least 85% sequence identity to AWISPTGGNTYYADSVKG (SEQ ID NO:66), RGLFHNVAFDY (SEQ ID NO:89), and QQTYNAPPT (SEQ ID NO:100), respectively.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSWIS (SEQ ID NO:20), GTISPYNGSTYYADSVKG (SEQ ID NO:21), and RVLRPKVYASVMDY (SEQ ID NO:22), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:68 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGYSIH (SEQ ID NO:23), AGISPTNGYTDYADSVKG (SEQ ID NO:24), and RLVFYRGVMDY (SEQ ID NO:25), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:69 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNWIS (SEQ ID NO:26), GYIYPASGYTDYADSVKG (SEQ ID NO:27), and SDSPHAYWYAMDY (SEQ ID NO:28), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:70 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTNNSIS (SEQ ID NO:29), GAISPNNGSTYYADSVKG (SEQ ID NO:30), and RNAWHYSWVGVMDY (SEQ ID NO:31), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:71 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTDYSIH (SEQ ID NO:32), AEIYPYSGDTYYADSVKG (SEQ ID NO:33), and RDGDGWFDWAMDY (SEQ ID NO:34), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:72 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSSTAIS (SEQ ID NO:35), GEIYPSDGYTDYADSVKG (SEQ ID NO:36), and RVKWAVSSLGVMDY (SEQ ID NO:37), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:73 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTDSDIS (SEQ ID NO:38), AWISPSDGATDYADSVKG (SEQ ID NO:39), and HEASDDDYAIDY (SEQ ID NO:40), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
n some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:74 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDYWIS (SEQ ID NO:41), AGISPNNGDTYYADSVKG (SEQ ID NO:42), and REDDDERDYAMDY (SEQ ID NO:43), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively).
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:75 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTGYGIS (SEQ ID NO:44), GWIYPASGATYYADSVKG (SEQ ID NO:45), and RHRAFDWYPYYIGSSVMDY (SEQ ID NO:46), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:76 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDYSIS (SEQ ID NO:47), GEINPAGGATYYADSVKG (SEQ ID NO:48), and RGDFPFWSDAYYVMDY (SEQ ID NO:49), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively).
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:77 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSDNDIS (SEQ ID NO:50), GSISPDNGDTNYADSVKG (SEQ ID NO:51), and RDDVPAVFTSAMDY (SEQ ID NO:52), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:78 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSDIS (SEQ ID NO:53), GEIYPSNGDTYYADSVKG (SEQ ID NO:54), and RSVRPSWWAMDY (SEQ ID NO:55), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:79 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSSYDIS (SEQ ID NO:56), GTISPYDGYTDYADSVKG (SEQ ID NO:57), and RYIRRYSVHYGMDY (SEQ ID NO:58), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:80 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTSTSIH (SEQ ID NO:59), AEITPHGGYTNYADSVKG (SEQ ID NO:60), and RGRTKWGWLYGMDY (SEQ ID NO:61), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:81 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTNNSIH (SEQ ID NO:62), AEIAPDDGYTYYADSVKG (SEQ ID NO:63), and RGVIRYAYLYAMDY (SEQ ID NO:64), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:82 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGSGIH (SEQ ID NO:65), AWISPTGGNTYYADSVKG (SEQ ID NO:66), and KSLFHNVAFDY (SEQ ID NO:67), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:83 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSNTYIS (SEQ ID NO:1), GFIYPANGATYYADSVKG (SEQ ID NO:2), and RRYRLSFDY (SEQ ID NO:3), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:84 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFSGNDIS (SEQ ID NO:4), AGISPYGGSTYYADSVKG (SEQ ID NO:5), and RRVSFYSRHAGMDY (SEQ ID NO:6), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:85 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments, provided herein is an anti-NSP4 antibody comprising a heavy chain and a light chain, wherein
(a) the heavy chain comprises an HVR-H1, an HVR-H2, and an HVR-H3 sequence having at least 85% sequence identity to GFTFTSYAIS (SEQ ID NO:7), AGISPSNGYTNYADSVKG (SEQ ID NO:8), and RAGRWTHSDIDY (SEQ ID NO:9), respectively; and/or
(b) the light chain comprises an HVR-L1, an HVR-L2, and an HVR-L3 sequence having at least 85% sequence identity to RASQDVS (SEQ ID NO:19), SASFLYS (SEQ ID NO:11), and QQSYTTPPT (SEQ ID NO:12), respectively.
In some embodiments, the antibody comprises a heavy chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:86 and/or a light chain variable region comprising a sequence having at least 85% sequence identity to SEQ ID NO:16.
In some embodiments that can be combined with any of the embodiments described above, the sequence identity can be at least 86%, 87%, 88%, 89%, 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity.
In some of the above embodiments, an anti-NSP4 antibody is an isolated antibody. In some of the above embodiments, an anti-NSP4 antibody is humanized. In one embodiment, an anti-NSP4 antibody comprises HVRs as in any of the above embodiments and HVRs (including HVRs comprising Kabat CDR, Chothia CDR, or Contact CDR sequences) of the antibodies described herein.
In certain embodiments, an anti-NSP4 antibody described herein comprises HVRs as defined by Kabat, e.g., an anti-NSP4 antibody comprising CDR-H1, CDR-H2, CDR-H3, CDR-L1, CDR-L2, and CDR-L3, wherein each of the CDRs is defined by Kabat as further described herein. In certain embodiments, an anti-NSP4 antibody described herein comprises HVRs as defined by Chothia, e.g., an anti-NSP4 antibody comprising CDR-H1, CDR-H2, CDR-H3, CDR-L1, CDR-L2, and CDR-L3, wherein each of the CDRs is defined by Chothia as further described herein. In certain embodiments, an anti-NSP4 antibody described herein comprises HVRs as defined by Contact CDR sequences, e.g., an anti-NSP4 antibody comprising CDR-H1, CDR-H2, CDR-H3, CDR-L1, CDR-L2, and CDR-L3, wherein each of the CDRs is defined by Contact CDR sequences as further described herein.
In another aspect, an anti-NSP4 antibody is provided, wherein the antibody comprises a light chain variable domain (VL) having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity to the amino acid sequence selected from SEQ ID NO:16, 102, 103, 104, 106, 108, 109, 112, or 113. In certain embodiments, a VL sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identity contains substitutions (e.g., conservative substitutions), insertions, or deletions relative to the reference sequence, but an anti-NSP4 antibody comprising that sequence retains the ability to bind to a NSP4. In certain embodiments, a total of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acids have been substituted, inserted and/or deleted in any of SEQ ID NO:16, 102, 103, 104, 106, 108, 109, 112, or 113. In certain embodiments, the substitutions, insertions, or deletions occur in regions outside the HVRs (i.e., in the FRs). Optionally, the anti-NSP4 antibody comprises the VL sequence of any of SEQ ID NO:16, 102, 103, 104, 106, 108, 109, 112, or 113, including post-translational modifications of those sequences. Optionally, the light chain contains a constant region with the sequence of SEQ ID NO:115.
In another aspect, an anti-NSP4 antibody comprises a heavy chain variable domain (VH) sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, 99%, or 100% sequence identity to the amino acid sequence selected from SEQ ID NO:13-15, 68-86, 105, 107, 110, and 111. In certain embodiments, a VH sequence having at least 90%, 91%, 92%, 93%, 94%, 95%, 96%, 97%, 98%, or 99% identity contains substitutions (e.g., conservative substitutions), insertions, or deletions relative to the reference sequence, but an anti-NSP4 antibody comprising that sequence retains the ability to bind to NSP4. In certain embodiments, a total of 1, 2, 3, 4, 5, 6, 7, 8, 9, or 10 amino acids have been substituted, inserted and/or deleted in any of SEQ ID NO:13-15, 68-86, 105, 107, 110, and 111. In certain embodiments, substitutions, insertions, or deletions occur in regions outside the HVRs (i.e., in the FRs). Optionally, the anti-NSP4 antibody comprises the VH sequence in any of SEQ ID NO:13-15, 68-86, 105, 107, 110, and 111, including post-translational modifications of those sequences. Optionally, the heavy chain contains a constant region with the sequence of SEQ ID NO:114.
In a further aspect of the invention, an anti-NSP4 antibody according to any of the above embodiments is a monoclonal antibody, including a chimeric, humanized or human antibody. In one embodiment, an anti-NSP4 antibody is an antibody fragment, e.g., a Fv, Fab, Fab′, scFv, diabody, or F(ab′)2 fragment. In another embodiment, the antibody is a full length antibody, e.g., an intact IgG1 antibody or other antibody class or isotype (e.g., IgG2, IgG3, or IgG4) as defined herein.
Amino acid sequences of NSP4 are known in the art. For example, a human NSP4 can have an amino acid sequence as shown in NCBI Accession number NP_999875.1, a non-human primate NSP4 can have an amino acid sequence as shown in NCBI Accession number XP_001146596.1 (chimpanzee NSP4), XP_002828403.1 (orangutan NSP4), EHH29398.1 (rhesus monkey NSP4), XP_003914595.1 (baboon NSP4), XP_002761565.1 (marmoset NSP4), or XP_003788878.1 (galago NSP4), a non-primate mammal can have an amino acid sequence as shown in NCBI Accession number NP_001036175.1 (mouse NSP4), Q6IE59.2 (rat NSP4), XP_004717061.1 (hedgehog NSP4), XP_001375784.7 (opossum NSP4), XP_542217.3 (dog NSP4), XP_593377.3 (cow NSP4) or XP_004009516.1 (sheep NSP4). In some embodiments, the anti-NSP4 antibody binds to human NSP4. In some embodiments, the anti-NSP4 antibody binds to mouse NSP4. In some embodiments, the anti-NSP4 antibody binds to both a human NSP4 and a mouse NSP4. In some embodiments, the anti-NSP4 antibody binds to an amino acid sequence of a NSP4 as shown in
In a further aspect, an anti-NSP4 antibody according to any of the above embodiments may incorporate any of the features, singly or in combination, as described in Sections below:
In certain embodiments, an antibody provided herein has a dissociation constant (Kd) of ≤150 nM, ≤100 nM, ≤50 nM, ≤10 nM, ≤1 nM, ≤0.1 nM, ≤0.01 nM, or ≤0.001 nM (e.g. 10−8M or less, e.g. from 10−8M to 10−13M, e.g., from 10−9M to 10−13 M).
In one embodiment, Kd is measured by a radiolabeled antigen binding assay (RIA) performed with the Fab version of an antibody of interest and its antigen as described by the following assay. Solution binding affinity of Fabs for antigen is measured by equilibrating Fab with a minimal concentration of (125I)-labeled antigen in the presence of a titration series of unlabeled antigen, then capturing bound antigen with an anti-Fab antibody-coated plate (see, e.g., Chen et al., J. Mol. Biol. 293:865-881(1999)). To establish conditions for the assay, MICROTITER® multi-well plates (Thermo Scientific) are coated overnight with 5 μg/ml of a capturing anti-Fab antibody (Cappel Labs) in 50 mM sodium carbonate (pH 9.6), and subsequently blocked with 2% (w/v) bovine serum albumin in PBS for two to five hours at room temperature (approximately 23° C.). In a non-adsorbent plate (Nunc #269620), 100 pM or 26 pM [125I]-antigen are mixed with serial dilutions of a Fab of interest (e.g., consistent with assessment of the anti-VEGF antibody, Fab-12, in Presta et al., Cancer Res. 57:4593-4599 (1997)). The Fab of interest is then incubated overnight; however, the incubation may continue for a longer period (e.g., about 65 hours) to ensure that equilibrium is reached. Thereafter, the mixtures are transferred to the capture plate for incubation at room temperature (e.g., for one hour). The solution is then removed and the plate washed eight times with 0.1% polysorbate 20 (TWEEN-20®) in PBS. When the plates have dried, 150 μl/well of scintillant (MICROSCINT-20™; Packard) is added, and the plates are counted on a TOPCOUNT™ gamma counter (Packard) for ten minutes. Concentrations of each Fab that give less than or equal to 20% of maximal binding are chosen for use in competitive binding assays.
According to another embodiment, Kd is measured using surface plasmon resonance assays using a BIACOR®-2000 or a BIACORE®-3000 (BIAcore, Inc., Piscataway, N.J.) at 25° C. with immobilized antigen CMS chips at ˜10 response units (RU). Briefly, carboxymethylated dextran biosensor chips (CMS, BIACORE, Inc.) are activated with N-ethyl-N′-(3-dimethylaminopropyl)-carbodiimide hydrochloride (EDC) and N-hydroxysuccinimide (NHS) according to the supplier's instructions. Antigen is diluted with 10 mM sodium acetate, pH 4.8, to 5 μg/ml (˜0.2 μM) before injection at a flow rate of 5 μl/minute to achieve approximately 10 response units (RU) of coupled protein. Following the injection of antigen, 1 M ethanolamine is injected to block unreacted groups. For kinetics measurements, two-fold serial dilutions of Fab (0.78 nM to 500 nM) are injected in PBS with 0.05% polysorbate 20 (TWEEN-20™) surfactant (PBST) at 25° C. at a flow rate of approximately 25 μl/min. Association rates (kon) and dissociation rates (koff) are calculated using a simple one-to-one Langmuir binding model (BIACORE® Evaluation Software version 3.2) by simultaneously fitting the association and dissociation sensorgrams. The equilibrium dissociation constant (Kd) is calculated as the ratio koff/kon. See, e.g., Chen et al., J. Mol. Biol. 293:865-881 (1999). If the on-rate exceeds 106 M−1 s−1 by the surface plasmon resonance assay above, then the on-rate can be determined by using a fluorescent quenching technique that measures the increase or decrease in fluorescence emission intensity (excitation=295 nm; emission=340 nm, 16 nm band-pass) at 25° C. of a 20 nM anti-antigen antibody (Fab form) in PBS, pH 7.2, in the presence of increasing concentrations of antigen as measured in a spectrometer, such as a stop-flow equipped spectrophotometer (Aviv Instruments) or a 8000-series SLM-AMINCO spectrophotometer (ThermoSpectronic) with a stirred cuvette.
In certain embodiments, an antibody provided herein is an antibody fragment. Antibody fragments include, but are not limited to, Fab, Fab′, Fab′-SH, F(ab′)2, Fv, and scFv fragments, and other fragments described below. For a review of certain antibody fragments, see Hudson et al. Nat. Med. 9:129-134 (2003). For a review of scFv fragments, see, e.g., Pluckthün, in The Pharmacology of Monoclonal Antibodies, vol. 113, Rosenburg and Moore eds., (Springer-Verlag, New York), pp. 269-315 (1994); see also WO 93/16185; and U.S. Pat. Nos. 5,571,894 and 5,587,458. For discussion of Fab and F(ab′)2 fragments comprising salvage receptor binding epitope residues and having increased in vivo half-life, see U.S. Pat. No. 5,869,046.
Diabodies are antibody fragments with two antigen-binding sites that may be bivalent or bispecific. See, for example, EP 404,097; WO 1993/01161; Hudson et al., Nat. Med. 9:129-134 (2003); and Hollinger et al., Proc. Natl. Acad. Sci. USA 90: 6444-6448 (1993). Triabodies and tetrabodies are also described in Hudson et al., Nat. Med. 9:129-134 (2003).
Single-domain antibodies are antibody fragments comprising all or a portion of the heavy chain variable domain or all or a portion of the light chain variable domain of an antibody. In certain embodiments, a single-domain antibody is a human single-domain antibody (Domantis, Inc., Waltham, Mass.; see, e.g., U.S. Pat. No. 6,248,516 B1).
Antibody fragments can be made by various techniques, including but not limited to proteolytic digestion of an intact antibody as well as production by recombinant host cells (e.g. E. coli or phage), as described herein.
In certain embodiments, an antibody provided herein is a chimeric antibody. Certain chimeric antibodies are described, e.g., in U.S. Pat. No. 4,816,567; and Morrison et al., Proc. Natl. Acad. Sci. USA, 81:6851-6855 (1984)). In one example, a chimeric antibody comprises a non-human variable region (e.g., a variable region derived from a mouse, rat, hamster, rabbit, or non-human primate, such as a monkey) and a human constant region. In a further example, a chimeric antibody is a “class switched” antibody in which the class or subclass has been changed from that of the parent antibody. Chimeric antibodies include antigen-binding fragments thereof.
In certain embodiments, a chimeric antibody is a humanized antibody. Typically, a non-human antibody is humanized to reduce immunogenicity to humans, while retaining the specificity and affinity of the parental non-human antibody. Generally, a humanized antibody comprises one or more variable domains in which HVRs, e.g., CDRs, (or portions thereof) are derived from a non-human antibody, and FRs (or portions thereof) are derived from human antibody sequences. A humanized antibody optionally will also comprise at least a portion of a human constant region. In some embodiments, some FR residues in a humanized antibody are substituted with corresponding residues from a non-human antibody (e.g., the antibody from which the HVR residues are derived), e.g., to restore or improve antibody specificity or affinity.
Humanized antibodies and methods of making them are reviewed, e.g., in Almagro and Fransson, Front. Biosci. 13:1619-1633 (2008), and are further described, e.g., in Riechmann et al., Nature 332:323-329 (1988); Queen et al., Proc. Nat'l Acad. Sci. USA 86:10029-10033 (1989); U.S. Pat. Nos. 5,821,337, 7,527,791, 6,982,321, and 7,087,409; Kashmiri et al., Methods 36:25-34 (2005) (describing SDR (a-CDR) grafting); Padlan, Mol. Immunol. 28:489-498 (1991) (describing “resurfacing”); Dall'Acqua et al., Methods 36:43-60 (2005) (describing “FR shuffling”); and Osbourn et al., Methods 36:61-68 (2005) and Klimka et al., Br. J. Cancer, 83:252-260 (2000) (describing the “guided selection” approach to FR shuffling).
Human framework regions that may be used for humanization include but are not limited to: framework regions selected using the “best-fit” method (see, e.g., Sims et al. J. Immunol. 151:2296 (1993)); framework regions derived from the consensus sequence of human antibodies of a particular subgroup of light or heavy chain variable regions (see, e.g., Carter et al. Proc. Natl. Acad. Sci. USA, 89:4285 (1992); and Presta et al. J. Immunol., 151:2623 (1993)); human mature (somatically mutated) framework regions or human germline framework regions (see, e.g., Almagro and Fransson, Front. Biosci. 13:1619-1633 (2008)); and framework regions derived from screening FR libraries (see, e.g., Baca et al., J. Biol. Chem. 272:10678-10684 (1997) and Rosok et al., J. Biol. Chem. 271:22611-22618 (1996)).
In certain embodiments, an antibody provided herein is a human antibody. Human antibodies can be produced using various techniques known in the art. Human antibodies are described generally in van Dijk and van de Winkel, Curr. Opin. Pharmacol. 5: 368-74 (2001) and Lonberg, Curr. Opin. Immunol. 20:450-459 (2008).
Human antibodies may be prepared by administering an immunogen to a transgenic animal that has been modified to produce intact human antibodies or intact antibodies with human variable regions in response to antigenic challenge. Such animals typically contain all or a portion of the human immunoglobulin loci, which replace the endogenous immunoglobulin loci, or which are present extrachromosomally or integrated randomly into the animal's chromosomes. In such transgenic mice, the endogenous immunoglobulin loci have generally been inactivated. For review of methods for obtaining human antibodies from transgenic animals, see Lonberg, Nat. Biotech. 23:1117-1125 (2005). See also, e.g., U.S. Pat. Nos. 6,075,181 and 6,150,584 describing XENOMOUSE technology; U.S. Pat. No. 5,770,429 describing HuMAB® technology; U.S. Pat. No. 7,041,870 describing K-M MOUSE® technology, and U.S. Patent Application Publication No. US 2007/0061900, describing V
Human antibodies can also be made by hybridoma-based methods. Human myeloma and mouse-human heteromyeloma cell lines for the production of human monoclonal antibodies have been described. (See, e.g., Kozbori. J. Immunol., 133: 3001 (1984); Brodeur et al., Monoclonal Antibody Production Techniques and Applications, pp. 51-63 (Marcel Dekker, Inc., New York, 1987); and Boerner et al., J. Immunol., 147: 86 (1991).) Human antibodies generated via human B-cell hybridoma technology are also described in Li et al., Proc. Natl. Acad. Sci. USA, 103:3557-3562 (2006). Additional methods include those described, for example, in U.S. Pat. No. 7,189,826 (describing production of monoclonal human IgM antibodies from hybridoma cell lines) and Ni, Xiandai Mianyixue, 26(4):265-268 (2006) (describing human-human hybridomas). Human hybridoma technology (Trioma technology) is also described in Vollmers and Brandlein, Histology and Histopathology, 20(3):927-937 (2005) and Vollmers and Brandlein, Methods and Findings in Experimental and Clinical Pharmacology, 27(3):185-91 (2005).
Human antibodies may also be generated by isolating Fv clone variable domain sequences selected from human-derived phage display libraries. Such variable domain sequences may then be combined with a desired human constant domain. Techniques for selecting human antibodies from antibody libraries are described below.
Antibodies of the invention may be isolated by screening combinatorial libraries for antibodies with the desired activity or activities. For example, a variety of methods are known in the art for generating phage display libraries and screening such libraries for antibodies possessing the desired binding characteristics such as the methods described in Example 3. Additional methods are reviewed, e.g., in Hoogenboom et al. in Methods in Molecular Biology 178:1-37 (O'Brien et al., ed., Human Press, Totowa, N.J., 2001) and further described, e.g., in the McCafferty et al., Nature 348:552-554; Clackson et al., Nature 352: 624-628 (1991); Marks et al., J. Mol. Biol. 222: 581-597 (1992); Marks and Bradbury, in Methods in Molecular Biology 248:161-175 (Lo, ed., Human Press, Totowa, N.J., 2003); Sidhu et al., J. Mol. Biol. 338(2): 299-310 (2004); Lee et al., J. Mol. Biol. 340(5): 1073-1093 (2004); Fellouse, Proc. Natl. Acad. Sci. USA 101(34): 12467-12472 (2004); and Lee et al., J. Immunol. Methods 284(1-2): 119-132(2004).
In certain phage display methods, repertoires of VH and VL genes are separately cloned by polymerase chain reaction (PCR) and recombined randomly in phage libraries, which can then be screened for antigen-binding phage as described in Winter et al., Ann. Rev. Immunol., 12: 433-455 (1994). Phage typically display antibody fragments, either as single-chain Fv (scFv) fragments or as Fab fragments. Libraries from immunized sources provide high-affinity antibodies to the immunogen without the requirement of constructing hybridomas. Alternatively, the naive repertoire can be cloned (e.g., from human) to provide a single source of antibodies to a wide range of non-self and also self-antigens without any immunization as described by Griffiths et al., EMBO J, 12: 725-734 (1993). Finally, naive libraries can also be made synthetically by cloning unrearranged V-gene segments from stem cells, and using PCR primers containing random sequence to encode the highly variable CDR3 regions and to accomplish rearrangement in vitro, as described by Hoogenboom and Winter, J. Mol. Biol., 227: 381-388 (1992). Patent publications describing human antibody phage libraries include, for example: U.S. Pat. No. 5,750,373, and US Patent Publication Nos. 2005/0079574, 2005/0119455, 2005/0266000, 2007/0117126, 2007/0160598, 2007/0237764, 2007/0292936, and 2009/0002360.
Antibodies or antibody fragments isolated from human antibody libraries are considered human antibodies or human antibody fragments herein.
In certain embodiments, an antibody provided herein is a multispecific antibody, e.g. a bispecific antibody. Multispecific antibodies are monoclonal antibodies that have binding specificities for at least two different sites. In certain embodiments, one of the binding specificities is for a NSP4 and the other is for any other antigen. In certain embodiments, bispecific antibodies may bind to two different epitopes of a NSP4. Bispecific antibodies can be prepared as full length antibodies or antibody fragments.
Techniques for making multispecific antibodies include, but are not limited to, recombinant co-expression of two immunoglobulin heavy chain-light chain pairs having different specificities (see Milstein and Cuello, Nature 305: 537 (1983)), WO 93/08829, and Traunecker et al., EMBO J. 10: 3655 (1991)), and “knob-in-hole” engineering (see, e.g., U.S. Pat. No. 5,731,168). Multi-specific antibodies may also be made by engineering electrostatic steering effects for making antibody Fc-heterodimeric molecules (WO 2009/089004A1); cross-linking two or more antibodies or fragments (see, e.g., U.S. Pat. No. 4,676,980, and Brennan et al., Science, 229: 81 (1985)); using leucine zippers to produce bi-specific antibodies (see, e.g., Kostelny et al., J. Immunol., 148(5):1547-1553 (1992)); using “diabody” technology for making bispecific antibody fragments (see, e.g., Hollinger et al., Proc. Natl. Acad. Sci. USA, 90:6444-6448 (1993)); and using single-chain Fv (sFv) dimers (see, e.g. Gruber et al., J. Immunol., 152:5368 (1994)); and preparing trispecific antibodies as described, e.g., in Tutt et al. J. Immunol. 147: 60 (1991).
Engineered antibodies with three or more functional antigen binding sites, including “Octopus antibodies,” are also included herein (see, e.g. US 2006/0025576A1).
The antibody or fragment herein also includes a “Dual Acting FAb” or “DAF” comprising an antigen binding site that binds to a NSP4 as well as another, different antigen (see, US 2008/0069820, for example).
In certain embodiments, amino acid sequence variants of the antibodies provided herein are contemplated. For example, it may be desirable to improve the binding affinity and/or other biological properties of the antibody. Amino acid sequence variants of an antibody may be prepared by introducing appropriate modifications into the nucleotide sequence encoding the antibody, or by peptide synthesis. Such modifications include, for example, deletions from, and/or insertions into and/or substitutions of residues within the amino acid sequences of the antibody. Any combination of deletion, insertion, and substitution can be made to arrive at the final construct, provided that the final construct possesses the desired characteristics, e.g., antigen-binding.
In certain embodiments, antibody variants having one or more amino acid substitutions are provided. Sites of interest for substitutional mutagenesis include the HVRs and FRs. Conservative substitutions are shown in Table 1 under the heading of “conservative substitutions.” More substantial changes are provided in Table 1 under the heading of “exemplary substitutions,” and as further described below in reference to amino acid side chain classes. Amino acid substitutions may be introduced into an antibody of interest and the products screened for a desired activity, e.g., retained/improved antigen binding, decreased immunogenicity, or improved ADCC or CDC.
Amino acids may be grouped according to common side-chain properties:
a. hydrophobic: Norleucine, Met, Ala, Val, Leu, Ile;
b. neutral hydrophilic: Cys, Ser, Thr, Asn, Gln;
c. acidic: Asp, Glu;
d. basic: His, Lys, Arg;
e. residues that influence chain orientation: Gly, Pro;
f. aromatic: Trp, Tyr, Phe.
Non-conservative substitutions will entail exchanging a member of one of these classes for another class.
One type of substitutional variant involves substituting one or more hypervariable region residues of a parent antibody (e.g. a humanized or human antibody). Generally, the resulting variant(s) selected for further study will have modifications (e.g., improvements) in certain biological properties (e.g., increased affinity, reduced immunogenicity) relative to the parent antibody and/or will have substantially retained certain biological properties of the parent antibody. An exemplary substitutional variant is an affinity matured antibody, which may be conveniently generated, e.g., using phage display-based affinity maturation techniques such as those described herein. Briefly, one or more HVR residues are mutated and the variant antibodies displayed on phage and screened for a particular biological activity (e.g. binding affinity).
Alterations (e.g., substitutions) may be made in HVRs, e.g., to improve antibody affinity. Such alterations may be made in HVR “hotspots,” i.e., residues encoded by codons that undergo mutation at high frequency during the somatic maturation process (see, e.g., Chowdhury, Methods Mol. Biol. 207:179-196 (2008)), and/or SDRs (a-CDRs), with the resulting variant VH or VL being tested for binding affinity. Affinity maturation by constructing and reselecting from secondary libraries has been described, e.g., in Hoogenboom et al. in Methods in Molecular Biology 178:1-37 (O'Brien et al., ed., Human Press, Totowa, N.J., (2001).) In some embodiments of affinity maturation, diversity is introduced into the variable genes chosen for maturation by any of a variety of methods (e.g., error-prone PCR, chain shuffling, or oligonucleotide-directed mutagenesis). A secondary library is then created. The library is then screened to identify any antibody variants with the desired affinity. Another method to introduce diversity involves HVR-directed approaches, in which several HVR residues (e.g., 4-6 residues at a time) are randomized. HVR residues involved in antigen binding may be specifically identified, e.g., using alanine scanning mutagenesis or modeling. CDR-H3 and CDR-L3 in particular are often targeted.
In certain embodiments, substitutions, insertions, or deletions may occur within one or more HVRs so long as such alterations do not substantially reduce the ability of the antibody to bind antigen. For example, conservative alterations (e.g., conservative substitutions as provided herein) that do not substantially reduce binding affinity may be made in HVRs. Such alterations may be outside of HVR “hotspots” or SDRs. In certain embodiments of the variant VH and VL sequences provided above, each HVR either is unaltered, or contains no more than one, two or three amino acid substitutions.
A useful method for identification of residues or regions of an antibody that may be targeted for mutagenesis is called “alanine scanning mutagenesis” as described by Cunningham and Wells (1989) Science, 244:1081-1085. In this method, a residue or group of target residues (e.g., charged residues such as arg, asp, his, lys, and glu) are identified and replaced by a neutral or negatively charged amino acid (e.g., alanine or polyalanine) to determine whether the interaction of the antibody with antigen is affected. Further substitutions may be introduced at the amino acid locations demonstrating functional sensitivity to the initial substitutions. Alternatively, or additionally, a crystal structure of an antigen-antibody complex to identify contact points between the antibody and antigen. Such contact residues and neighboring residues may be targeted or eliminated as candidates for substitution. Variants may be screened to determine whether they contain the desired properties.
Amino acid sequence insertions include amino- and/or carboxyl-terminal fusions ranging in length from one residue to polypeptides containing a hundred or more residues, as well as intrasequence insertions of single or multiple amino acid residues. Examples of terminal insertions include an antibody with an N-terminal methionyl residue. Other insertional variants of the antibody molecule include the fusion to the N- or C-terminus of the antibody to an enzyme (e.g., for ADEPT) or a polypeptide which increases the serum half-life of the antibody.
In certain embodiments, an antibody provided herein is altered to increase or decrease the extent to which the antibody is glycosylated. Addition or deletion of glycosylation sites to an antibody may be conveniently accomplished by altering the amino acid sequence such that one or more glycosylation sites is created or removed.
Where the antibody comprises an Fc region, the carbohydrate attached thereto may be altered. Native antibodies produced by mammalian cells typically comprise a branched, biantennary oligosaccharide that is generally attached by an N-linkage to Asn297 of the CH2 domain of the Fc region. See, e.g., Wright et al. TIBTECH 15:26-32 (1997). The oligosaccharide may include various carbohydrates, e.g., mannose, N-acetyl glucosamine (GlcNAc), galactose, and sialic acid, as well as a fucose attached to a GlcNAc in the “stem” of the biantennary oligosaccharide structure. In some embodiments, modifications of the oligosaccharide in an antibody of the invention may be made in order to create antibody variants with certain improved properties.
In one embodiment, antibody variants are provided comprising an Fc region wherein a carbohydrate structure attached to the Fc region has reduced fucose or lacks fucose, which may improve ADCC function. Specifically, antibodies are contemplated herein that have reduced fusose relative to the amount of fucose on the same antibody produced in a wild-type CHO cell. That is, they are characterized by having a lower amount of fucose than they would otherwise have if produced by native CHO cells (e.g., a CHO cell that produce a native glycosylation pattern, such as, a CHO cell containing a native FUT8 gene). In certain embodiments, the antibody is one wherein less than about 50%, 40%, 30%, 20%, 10%, or 5% of the N-linked glycans thereon comprise fucose. For example, the amount of fucose in such an antibody may be from 1% to 80%, from 1% to 65%, from 5% to 65% or from 20% to 40%. In certain embodiments, the antibody is one wherein none of the N-linked glycans thereon comprise fucose, i.e., wherein the antibody is completely without fucose, or has no fucose or is afucosylated. The amount of fucose is determined by calculating the average amount of fucose within the sugar chain at Asn297, relative to the sum of all glycostructures attached to Asn 297 (e. g. complex, hybrid and high mannose structures) as measured by MALDI-TOF mass spectrometry, as described in WO 2008/077546, for example. Asn297 refers to the asparagine residue located at about position 297 in the Fc region (Eu numbering of Fc region residues); however, Asn297 may also be located about ±3 amino acids upstream or downstream of position 297, i.e., between positions 294 and 300, due to minor sequence variations in antibodies. Such fucosylation variants may have improved ADCC function. See, e.g., US Patent Publication Nos. US 2003/0157108 (Presta, L.); US 2004/0093621 (Kyowa Hakko Kogyo Co., Ltd). Examples of publications related to “defucosylated” or “fucose-deficient” antibody variants include: US 2003/0157108; WO 2000/61739; WO 2001/29246; US 2003/0115614; US 2002/0164328; US 2004/0093621; US 2004/0132140; US 2004/0110704; US 2004/0110282; US 2004/0109865; WO 2003/085119; WO 2003/084570; WO 2005/035586; WO 2005/035778; WO2005/053742; WO2002/031140; Okazaki et al. J. Mol. Biol. 336:1239-1249 (2004); Yamane-Ohnuki et al. Biotech. Bioeng. 87: 614 (2004). Examples of cell lines capable of producing defucosylated antibodies include Lec13 CHO cells deficient in protein fucosylation (Ripka et al. Arch. Biochem. Biophys. 249:533-545 (1986); US Pat Appl No US 2003/0157108 A1, Presta, L; and WO 2004/056312 A1, Adams et al., especially at Example 11), and knockout cell lines, such as alpha-1,6-fucosyltransferase gene, FUT8, knockout CHO cells (see, e.g., Yamane-Ohnuki et al. Biotech. Bioeng. 87: 614 (2004); Kanda, Y. et al., Biotechnol. Bioeng., 94(4):680-688 (2006); and WO2003/085107).
Antibody variants are further provided with bisected oligosaccharides, e.g., in which a biantennary oligosaccharide attached to the Fc region of the antibody is bisected by GlcNAc. Such antibody variants may have reduced fucosylation and/or improved ADCC function. Examples of such antibody variants are described, e.g., in WO 2003/011878 (Jean-Mairet et al.); U.S. Pat. No. 6,602,684 (Umana et al.); US 2005/0123546 (Umana et al.), and Ferrara et al., Biotechnology and Bioengineering, 93(5): 851-861 (2006). Antibody variants with at least one galactose residue in the oligosaccharide attached to the Fc region are also provided. Such antibody variants may have improved CDC function. Such antibody variants are described, e.g., in WO 1997/30087 (Patel et al.); WO 1998/58964 (Raju, S.); and WO 1999/22764 (Raju, S.).
In certain embodiments, the antibody variants comprising an Fc region described herein are capable of binding to an FcγRIII. In certain embodiments, the antibody variants comprising an Fc region described herein have ADCC activity in the presence of human effector cells or have increased ADCC activity in the presence of human effector cells compared to the otherwise same antibody comprising a human wild-type IgG1Fc region.
In certain embodiments, one or more amino acid modifications may be introduced into the Fc region of an antibody provided herein, thereby generating an Fc region variant. The Fc region variant may comprise a human Fc region sequence (e.g., a human IgG1, IgG2, IgG3 or IgG4 Fc region) comprising an amino acid modification (e.g. a substitution) at one or more amino acid positions.
In certain embodiments, the invention contemplates an antibody variant that possesses some but not all effector functions, which make it a desirable candidate for applications in which the half-life of the antibody in vivo is important yet certain effector functions (such as complement and ADCC) are unnecessary or deleterious. In vitro and/or in vivo cytotoxicity assays can be conducted to confirm the reduction/depletion of CDC and/or ADCC activities. For example, Fc receptor (FcR) binding assays can be conducted to ensure that the antibody lacks FcγR binding (hence likely lacking ADCC activity), but retains FcRn binding ability. The primary cells for mediating ADCC, NK cells, express FcγRIII only, whereas monocytes express FcγRI, FcγRII and FcγRIII. FcR expression on hematopoietic cells is summarized in Table 3 on page 464 of Ravetch and Kinet, Annu. Rev. Immunol. 9:457-492 (1991). Non-limiting examples of in vitro assays to assess ADCC activity of a molecule of interest is described in U.S. Pat. No. 5,500,362 (see, e.g. Hellstrom, I. et al. Proc. Nat'l Acad. Sci. USA 83:7059-7063 (1986)) and Hellstrom, I et al., Proc. Nat'l Acad. Sci. USA 82:1499-1502 (1985); 5,821,337 (see Bruggemann, M. et al., J. Exp. Med. 166:1351-1361 (1987)). Alternatively, non-radioactive assays methods may be employed (see, for example, ACTI™ non-radioactive cytotoxicity assay for flow cytometry (CellTechnology, Inc. Mountain View, Calif.; and CytoTox 96® non-radioactive cytotoxicity assay (Promega, Madison, Wis.). Useful effector cells for such assays include peripheral blood mononuclear cells (PBMC) and Natural Killer (NK) cells. Alternatively, or additionally, ADCC activity of the molecule of interest may be assessed in vivo, e.g., in an animal model such as that disclosed in Clynes et al. Proc. Nat'l Acad. Sci. USA 95:652-656 (1998). C1q binding assays may also be carried out to confirm that the antibody is unable to bind C1q and hence lacks CDC activity. See, e.g., C1q and C3c binding ELISA in WO 2006/029879 and WO 2005/100402. To assess complement activation, a CDC assay may be performed (see, for example, Gazzano-Santoro et al., J. Immunol. Methods 202:163 (1996); Cragg, M. S. et al., Blood 101:1045-1052 (2003); and Cragg, M. S. and M. J. Glennie, Blood 103:2738-2743 (2004)). FcRn binding and in vivo clearance/half life determinations can also be performed using methods known in the art (see, e.g., Petkova, S. B. et al., Int'l. Immunol. 18(12):1759-1769 (2006)).
Antibodies with reduced effector function include those with substitution of one or more of Fc region residues 238, 265, 269, 270, 297, 327 and 329 (U.S. Pat. No. 6,737,056). Such Fc mutants include Fc mutants with substitutions at two or more of amino acid positions 265, 269, 270, 297 and 327, including the so-called “DANA” Fc mutant with substitution of residues 265 and 297 to alanine (U.S. Pat. No. 7,332,581).
Certain antibody variants with improved or diminished binding to FcRs are described. (See, e.g., U.S. Pat. No. 6,737,056; WO 2004/056312, and Shields et al., J. Biol. Chem. 9(2): 6591-6604 (2001).)
In certain embodiments, an antibody variant comprises an Fc region with one or more amino acid substitutions which improve ADCC, e.g., substitutions at positions 298, 333, and/or 334 of the Fc region (EU numbering of residues). In an exemplary embodiment, the anti-NSP4 antibody comprising the following amino acid substitutions in its Fc region: S298A, E333A, and K334A.
In some embodiments, alterations are made in the Fc region that result in altered (i.e., either improved or diminished) C1q binding and/or Complement Dependent Cytotoxicity (CDC), e.g., as described in U.S. Pat. No. 6,194,551, WO 99/51642, and Idusogie et al. J. Immunol. 164: 4178-4184 (2000).
Antibodies with increased half lives and improved binding to the neonatal Fc receptor (FcRn), which is responsible for the transfer of maternal IgGs to the fetus (Guyer et al., J. Immunol. 117:587 (1976) and Kim et al., J. Immunol. 24:249 (1994)), are described in US2005/0014934A1 (Hinton et al.)). Those antibodies comprise an Fc region with one or more substitutions therein which improve binding of the Fc region to FcRn. Such Fc variants include those with substitutions at one or more of Fc region residues: 238, 256, 265, 272, 286, 303, 305, 307, 311, 312, 317, 340, 356, 360, 362, 376, 378, 380, 382, 413, 424 or 434, e.g., substitution of Fc region residue 434 (U.S. Pat. No. 7,371,826).
See also Duncan & Winter, Nature 322:738-40 (1988); U.S. Pat. No. 5,648,260; U.S. Pat. No. 5,624,821; and WO 94/29351 concerning other examples of Fc region variants.
In certain embodiments, it may be desirable to create cysteine engineered antibodies, e.g., “thioMAbs,” in which one or more residues of an antibody are substituted with cysteine residues. In particular embodiments, the substituted residues occur at accessible sites of the antibody. By substituting those residues with cysteine, reactive thiol groups are thereby positioned at accessible sites of the antibody and may be used to conjugate the antibody to other moieties, such as drug moieties or linker-drug moieties, to create an immunoconjugate. In certain embodiments, any one or more of the following residues may be substituted with cysteine: V205 (Kabat numbering) of the light chain; A118 (EU numbering) of the heavy chain; and S400 (EU numbering) of the heavy chain Fc region. Cysteine engineered antibodies may be generated as described, e.g., in U.S. Pat. No. 7,521,541.
In certain embodiments, an antibody provided herein may be further modified to contain additional nonproteinaceous moieties that are known in the art and readily available. The moieties suitable for derivatization of the antibody include but are not limited to water soluble polymers. Non-limiting examples of water soluble polymers include, but are not limited to, polyethylene glycol (PEG), copolymers of ethylene glycol/propylene glycol, carboxymethylcellulose, dextran, polyvinyl alcohol, polyvinyl pyrrolidone, poly-1, 3-dioxolane, poly-1,3,6-trioxane, ethylene/maleic anhydride copolymer, polyaminoacids (either homopolymers or random copolymers), and dextran or poly(n-vinyl pyrrolidone)polyethylene glycol, propropylene glycol homopolymers, prolypropylene oxide/ethylene oxide co-polymers, polyoxyethylated polyols (e.g., glycerol), polyvinyl alcohol, and mixtures thereof. Polyethylene glycol propionaldehyde may have advantages in manufacturing due to its stability in water. The polymer may be of any molecular weight, and may be branched or unbranched. The number of polymers attached to the antibody may vary, and if more than one polymer are attached, they can be the same or different molecules. In general, the number and/or type of polymers used for derivatization can be determined based on considerations including, but not limited to, the particular properties or functions of the antibody to be improved, whether the antibody derivative will be used in a therapy under defined conditions, etc.
In another embodiment, conjugates of an antibody and nonproteinaceous moiety that may be selectively heated by exposure to radiation are provided. In one embodiment, the nonproteinaceous moiety is a carbon nanotube (Kam et al., Proc. Natl. Acad. Sci. USA 102: 11600-11605 (2005)). The radiation may be of any wavelength, and includes, but is not limited to, wavelengths that do not harm ordinary cells, but which heat the nonproteinaceous moiety to a temperature at which cells proximal to the antibody-nonproteinaceous moiety are killed.
Antibodies may be produced using recombinant methods and compositions, e.g., as described in U.S. Pat. No. 4,816,567. In one embodiment, isolated nucleic acid encoding an anti-NSP4 antibody described herein is provided. Such nucleic acid may encode an amino acid sequence comprising the VL and/or an amino acid sequence comprising the VH of the antibody (e.g., the light and/or heavy chains of the antibody). In a further embodiment, one or more vectors (e.g., expression vectors) comprising such nucleic acid are provided. In a further embodiment, a host cell comprising such nucleic acid is provided. In one such embodiment, a host cell comprises (e.g., has been transformed with): (1) a vector comprising a nucleic acid that encodes an amino acid sequence comprising the VL of the antibody and an amino acid sequence comprising the VH of the antibody, or (2) a first vector comprising a nucleic acid that encodes an amino acid sequence comprising the VL of the antibody and a second vector comprising a nucleic acid that encodes an amino acid sequence comprising the VH of the antibody. In one embodiment, the host cell is eukaryotic, e.g. a Chinese Hamster Ovary (CHO) cell or lymphoid cell (e.g., Y0, NS0, Sp20 cell). In one embodiment, a method of making an anti-NSP4 antibody is provided, wherein the method comprises culturing a host cell comprising a nucleic acid encoding the antibody, as provided above, under conditions suitable for expression of the antibody, and optionally recovering the antibody from the host cell (or host cell culture medium). Further provided herein are anti-NSP4 antibodies produced by such methods.
For recombinant production of an anti-NSP4 antibody, nucleic acid encoding an antibody, e.g., as described above, is isolated and inserted into one or more vectors for further cloning and/or expression in a host cell. Such nucleic acid may be readily isolated and sequenced using conventional procedures (e.g., by using oligonucleotide probes that are capable of binding specifically to genes encoding the heavy and light chains of the antibody).
Suitable host cells for cloning or expression of antibody-encoding vectors include prokaryotic or eukaryotic cells described herein. For example, antibodies may be produced in bacteria, in particular when glycosylation and Fc effector function are not needed. For expression of antibody fragments and polypeptides in bacteria, see, e.g., U.S. Pat. Nos. 5,648,237, 5,789,199, and 5,840,523. (See also Charlton, Methods in Molecular Biology, Vol. 248 (B. K. C. Lo, ed., Humana Press, Totowa, N.J., 2003), pp. 245-254, describing expression of antibody fragments in E. coli.) After expression, the antibody may be isolated from the bacterial cell paste in a soluble fraction and can be further purified.
In addition to prokaryotes, eukaryotic microbes such as filamentous fungi or yeast are suitable cloning or expression hosts for antibody-encoding vectors, including fungi and yeast strains whose glycosylation pathways have been “humanized,” resulting in the production of an antibody with a partially or fully human glycosylation pattern. See Gerngross, Nat. Biotech. 22:1409-1414 (2004), and Li et al., Nat. Biotech. 24:210-215 (2006).
Suitable host cells for the expression of glycosylated antibody are also derived from multicellular organisms (invertebrates and vertebrates). Examples of invertebrate cells include plant and insect cells. Numerous baculoviral strains have been identified which may be used in conjunction with insect cells, particularly for transfection of Spodoptera frugiperda cells.
Plant cell cultures can also be utilized as hosts. See, e.g., U.S. Pat. Nos. 5,959,177, 6,040,498, 6,420,548, 7,125,978, and 6,417,429 (describing PLANTIBODIES™ technology for producing antibodies in transgenic plants).
Vertebrate cells may also be used as hosts. For example, mammalian cell lines that are adapted to grow in suspension may be useful. Other examples of useful mammalian host cell lines are monkey kidney CV1 line transformed by SV40 (COS-7); human embryonic kidney line (293 or 293 cells as described, e.g., in Graham et al., J. Gen Virol. 36:59 (1977)); baby hamster kidney cells (BHK); mouse sertoli cells (TM4 cells as described, e.g., in Mather, Biol. Reprod. 23:243-251 (1980)); monkey kidney cells (CV1); African green monkey kidney cells (VERO-76); human cervical carcinoma cells (HELA); canine kidney cells (MDCK; buffalo rat liver cells (BRL 3A); human lung cells (W138); human liver cells (Hep G2); mouse mammary tumor (MMT 060562); TRI cells, as described, e.g., in Mather et al., Annals N.Y. Acad. Sci. 383:44-68 (1982); MRC 5 cells; and FS4 cells. Other useful mammalian host cell lines include Chinese hamster ovary (CHO) cells, including DHFR− CHO cells (Urlaub et al., Proc. Natl. Acad. Sci. USA 77:4216 (1980)); and myeloma cell lines such as Y0, NS0 and Sp2/0. For a review of certain mammalian host cell lines suitable for antibody production, see, e.g., Yazaki and Wu, Methods in Molecular Biology, Vol. 248 (B. K. C. Lo, ed., Humana Press, Totowa, N.J.), pp. 255-268 (2003).
Anti-NSP4 antibodies provided herein may be identified, screened for, or characterized for their physical/chemical properties and/or biological activities by various assays known in the art.
In one aspect, an antibody of the invention is tested for its antigen binding activity, e.g., by known methods such as ELISA, Western blot, etc.
In another aspect, competition assays may be used to identify an antibody that competes with one or more antibodies selected from 1-1, 1-2, 1-3, 1-5, 2-1, 2-2, 2-3, 2-4, 2-5, 3-2, 3-5, 4-2, 4-3, 4-4, 4-5, 5-1, 5-2, 5-3, 5-4, 35.WT, 35.14, 35.50, 35.62, 35.77, 51.WT, 51.30, 51.50, 51.51, 51.59, 51.72, and 51.82 for binding to a NSP4. In certain embodiments, such a competing antibody binds to the same epitope (e.g., a linear or a conformational epitope) that is bound by one or more antibodies selected from 1-1, 1-2, 1-3, 1-5, 2-1, 2-2, 2-3, 2-4, 2-5, 3-2, 3-5, 4-2, 4-3, 4-4, 4-5, 5-1, 5-2, 5-3, 5-4, 35.WT, 35.14, 35.50, 35.62, 35.77, 51.WT, 51.30, 51.50, 51.51, 51.59, 51.72, and 51.82. Detailed exemplary methods for mapping an epitope to which an antibody binds are provided in Morris (1996) “Epitope Mapping Protocols,” in Methods in Molecular Biology vol. 66 (Humana Press, Totowa, N.J.).
In an exemplary competition assay, immobilized NSP4 is incubated in a solution comprising a first labeled antibody that binds to a NSP4 (e.g., a human NSP4 or a mouse NSP4) and a second unlabeled antibody that is being tested for its ability to compete with the first antibody for binding to NSP4. The second antibody may be present in a hybridoma supernatant. As a control, immobilized NSP4 is incubated in a solution comprising the first labeled antibody but not the second unlabeled antibody. After incubation under conditions permissive for binding of the first antibody to NSP4, excess unbound antibody is removed, and the amount of label associated with immobilized NSP4 is measured. If the amount of label associated with immobilized NSP4 is substantially reduced in the test sample relative to the control sample, then that indicates that the second antibody is competing with the first antibody for binding to NSP4. See Harlow and Lane (1988) Antibodies: A Laboratory Manual ch. 14 (Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.).
In another aspect, biolayer interferometry may be used to determine the affinity of anti-NSP4 antibodies against a NSP4. In an exemplary assay, an anti-NSP4 antibody is immobilized onto anti-human Fc sensors, and incubated with increasing concentrations of NSP4 to obtain affinity measurements using an instrument such as, for example, the Octet System (ForteBio).
In another aspect, ELISA may be used to identify an antibody that binds to a complex of a NSP4 and a protease inhibitor (e.g., α1-antitrypsin). In an exemplary assay, recombinant NSP4 is mixed with a protease inhibitor, such as a serine protease inhibitor, to allow complex formation. The NSP4 complexes are coated in nickel (Ni) plates via a His-tag present on the recombinant NSP4 and a capture ELISA is performed as previously described (see Kuhl et al., 2010, J. Immunol., 185, 387-399) with the anti-NSP4 antibody. Binding of anti-NSP4 antibody to the NSP4 complexes as compared to an isotype antibody control identifies the antibody as binding to a complex of NSP4 and a protease inhibitor. See, e.g., Hinkofer et al., J. Biol. Chem., 2013, 288:26635-26648.
In any of the embodiments herein, the NSP4 used in the assay can be a mature form or a precursor form of a NSP4.
Assays known in the art and described herein (e.g., Example 3) can be used for identifying and testing biological activities of anti-NSP4 antibodies. In some embodiments, assays for testing anti-NSP4 antibodies for blocking NSP4 activity are provided. An exemplary test for biological activity may include, e.g., providing a NSP4 (e.g., a human NSP4) in a mixture with an anti-NSP4 antibody and incubating the mixture with one or more internally-quenched fluorogenic peptide substrate and measuring the fluorescence intensity with an instrument, such as, for example, a spectrophotometer. An increase in fluorescence in the presence of an anti-NSP4 antibody would indicate the anti-NSP4 antibody is unable to block NSP4 activity, while a lack of increase in fluorescence in the presence of an anti-NSP4 antibody would indicate the anti-NSP4 antibody blocks NSP4 activity. Exemplary fluorogenic peptide substrates that can used in assays described herein include, but are not limited to, a fluorogenic peptide substrate with the amino acid sequence 1IR{Arg(Me)}SSYSFKK10 or 1IR{Arg}SSYSFKK10.
In some embodiments, the anti-NSP4 antibody may block at least about any of 50%, 60%, 70%, 80%, 85%, 90%, 95% and 100% of NSP4 activity in any of these assays.
Assays for testing anti-NSP4 antibodies for blocking NSP4 activity are also provided. An exemplary method for assessing NSP4 activity may include providing granulocytes on a substrate, incubating the granulocytes with a NSP4 inhibitor, such as an anti-NSP4 antibody, followed by stimulation with a chemotactic factor (such as Complement C5a or interleukin-8), and measuring a change in chemotaxis or motility of the granulocytes in the presence of an anti-NSP4 antibody as compared to an isotype control, wherein a reduction in chemotaxis or motility indicates the anti-NSP4 antibody is blocking NSP4 activity.
In another exemplary assay, an in vivo animal model for a neutrophil-mediated disease can be used. For example, the neutrophil-dependent K/B×N serum transfer arthritis model can be used by administering an anti-NSP4 antibody prior to, concomitant with, or after administration of intravenous K/B×N serum. Vascular leakage, erythema, and edema in the paws of treated mice can be monitored using in vivo near-infrared fluorescence imaging as described in Example 2, wherein a reduction of any one of vascular leakage, erythema, or edema indicates the anti-NSP4 antibody blocks NSP4 activity.
In certain embodiments, any of the anti-NSP4 antibodies provided herein is useful for detecting the presence of a NSP4 protein in a biological sample. The term “detecting” as used herein encompasses quantitative or qualitative detection. In certain embodiments, a biological sample comprises a cell or tissue, such as neutrophils.
In one embodiment, an anti-NSP4 antibody for use in a method of diagnosis or detection is provided. In a further aspect, a method of detecting the presence of a NSP4 in a biological sample is provided. In certain embodiments, the method comprises contacting the biological sample with an anti-NSP4 antibody as described herein under conditions permissive for binding of the anti-NSP4 antibody to a NSP4, and detecting whether a complex is formed between the anti-NSP4 antibody and a NSP4. Such method may be an in vitro or in vivo method. In one embodiment, an anti-NSP4 antibody is used to select subjects eligible for therapy with an anti-NSP4 antibody, e.g. where a NSP4 is a biomarker for selection of patients.
Exemplary disorders that may be diagnosed using an antibody of the invention include stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis (e.g., juvenile rheumatoid arthritis), septic shock, chronic bronchitis, pulmonary emphysema, α-1 anti-trypsin deficiency, cystic fibrosis, idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases, cancer (e.g., lung cancer), a disease caused by a deficiency in a natural protease inhibitor (e.g., a serine protease inhibitor), and any other granulocyte-mediated disease or disorder (e.g., neutrophil-mediated disease or disorder) described and contemplated herein.
In certain embodiments, labeled anti-NSP4 antibodies are provided. Labels include, but are not limited to, labels or moieties that are detected directly (such as fluorescent, chromophoric, electron-dense, chemiluminescent, and radioactive labels), as well as moieties, such as enzymes or ligands, that are detected indirectly, e.g., through an enzymatic reaction or molecular interaction. Exemplary labels include, but are not limited to, the radioisotopes 32P, 14C, 125I, 3H, and 131I, fluorophores such as rare earth chelates or fluorescein and its derivatives, rhodamine and its derivatives, dansyl, umbelliferone, luceriferases, e.g., firefly luciferase and bacterial luciferase (U.S. Pat. No. 4,737,456), luciferin, 2,3-dihydrophthalazinediones, horseradish peroxidase (HRP), alkaline phosphatase, (3-galactosidase, glucoamylase, lysozyme, saccharide oxidases, e.g., glucose oxidase, galactose oxidase, and glucose-6-phosphate dehydrogenase, heterocyclic oxidases such as uricase and xanthine oxidase, coupled with an enzyme that employs hydrogen peroxide to oxidize a dye precursor such as HRP, lactoperoxidase, or microperoxidase, biotin/avidin, spin labels, bacteriophage labels, stable free radicals, and the like.
B. Pharmaceutical Compositions and Formulations
Also provided herein are pharmaceutical compositions and formulations comprising a NSP4 inhibitor described herein and a pharmaceutically acceptable carrier. In some embodiments, the NSP4 inhibitor may be an antibody described herein.
Pharmaceutical compositions and formulations as described herein can be prepared by mixing the NSP4 inhibitor (such as an antibody or a polypeptide) having the desired degree of purity with one or more optional pharmaceutically acceptable carriers (Remington's Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980)), in the form of lyophilized formulations or aqueous solutions. Pharmaceutically acceptable carriers are generally nontoxic to recipients at the dosages and concentrations employed, and include, but are not limited to: buffers such as phosphate, citrate, and other organic acids; antioxidants including ascorbic acid and methionine; preservatives (such as octadecyldimethylbenzyl ammonium chloride; hexamethonium chloride; benzalkonium chloride; benzethonium chloride; phenol, butyl or benzyl alcohol; alkyl parabens such as methyl or propyl paraben; catechol; resorcinol; cyclohexanol; 3-pentanol; and m-cresol); low molecular weight (less than about 10 residues) polypeptides; proteins, such as serum albumin, gelatin, or immunoglobulins; hydrophilic polymers such as polyvinylpyrrolidone; amino acids such as glycine, glutamine, asparagine, histidine, arginine, or lysine; monosaccharides, disaccharides, and other carbohydrates including glucose, mannose, or dextrins; chelating agents such as EDTA; sugars such as sucrose, mannitol, trehalose or sorbitol; salt-forming counter-ions such as sodium; metal complexes (e.g. Zn-protein complexes); and/or non-ionic surfactants such as polyethylene glycol (PEG). Exemplary pharmaceutically acceptable carriers herein further include insterstitial drug dispersion agents such as soluble neutral-active hyaluronidase glycoproteins (sHASEGP), for example, human soluble PH-20 hyaluronidase glycoproteins, such as rHuPH20 (HYLENEX®, Baxter International, Inc.). Certain exemplary sHASEGPs and methods of use, including rHuPH20, are described in US Patent Publication Nos. 2005/0260186 and 2006/0104968. In one aspect, a sHASEGP is combined with one or more additional glycosaminoglycanases such as chondroitinases.
Exemplary lyophilized antibody formulations are described in U.S. Pat. No. 6,267,958. Aqueous antibody formulations include those described in U.S. Pat. No. 6,171,586 and WO2006/044908, the latter formulations including a histidine-acetate buffer.
The composition and formulation herein may also contain more than one active ingredients as necessary for the particular indication being treated, preferably those with complementary activities that do not adversely affect each other. Such active ingredients are suitably present in combination in amounts that are effective for the purpose intended.
Active ingredients may be entrapped in microcapsules prepared, for example, by coacervation techniques or by interfacial polymerization, for example, hydroxymethylcellulose or gelatin-microcapsules and poly-(methylmethacylate) microcapsules, respectively, in colloidal drug delivery systems (for example, liposomes, albumin microspheres, microemulsions, nano-particles and nanocapsules) or in macroemulsions. Such techniques are disclosed in Remington's Pharmaceutical Sciences 16th edition, Osol, A. Ed. (1980).
Sustained-release preparations may be prepared. Suitable examples of sustained-release preparations include semipermeable matrices of solid hydrophobic polymers containing the antibody, which matrices are in the form of shaped articles, e.g. films, or microcapsules.
The formulations to be used for in vivo administration are generally sterile. Sterility may be readily accomplished, e.g., by filtration through sterile filtration membranes.
C. Therapeutic Methods
Any of the NSP4 inhibitors (e.g., an anti-NSP4 antibody) provided herein may be used in therapeutic methods.
In one aspect, a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use as a medicament is provided. In further aspects, a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use in treating or preventing a disease or disorder mediated by granulocytes is provided. In certain embodiments, a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use in a method of treatment or prevention is provided. In certain embodiments, the invention provides a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use in a method of treating or preventing an individual having a disease or disorder mediated by granulocytes comprising administering to the individual an effective amount of the NSP4 inhibitor. In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent. In some embodiments, the disease or disorder mediated by granulocytes is selected from the group consisting of vascular disease and inflammatory disease. An “individual” according to any of the above embodiments is preferably a human. In any of the embodiments herein, the disease or disorder mediated by granulocytes can be a disease described herein.
In certain embodiments, the invention provides an anti-NSP4 antibody for use in a method of treating or preventing an individual having a disease or disorder mediated by granulocytes comprising administering to the individual an effective amount of the anti-NSP4 antibody. In certain embodiments, the antibody specifically binds an NSP4 active site. In certain embodiments, the antibody inhibits catalytic activity of NSP4. In certain embodiments, the antibody specifically binds an NSP4 active site and inhibits catalytic activity of NSP4. In certain embodiments, the antibody specifically binds an NSP4 heparin binding site. In certain embodiments, the antibody competes with heparin for binding to NSP4. In certain embodiments, the antibody specifically binds an NSP4 heparin binding site and competes with heparin for binding to NSP4. In certain embodiments, an effective amount of an antibody that specifically binds an NSP4 active site and/or inhibits catalytic activity of NSP4 and an antibody that specifically binds an NSP4 heparin binding site and/or competes with heparin for binding to NSP4 is administered to the individual.
In a further aspect, the invention provides for the use of a NSP4 inhibitor (e.g., an anti-NSP4 antibody) in the manufacture or preparation of a medicament. In one embodiment, the medicament is for treatment or prevention of a disease or disorder mediated by granulocytes. In a further embodiment, the medicament is for use in a method of treating or preventing a disease or disorder mediated by granulocytes comprising administering to an individual having the disease or disorder an effective amount of the medicament. In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent. In some embodiments, the disease or disorder mediated by granulocytes is selected from the group consisting of vascular disease and inflammatory disease. An “individual” according to any of the above embodiments may be a human. In any of the embodiments herein, the disease or disorder mediated by granulocytes can be a disease described herein.
In a further aspect, the invention provides a method for treating or preventing a disease or disorder mediated by granulocytes. In one embodiment, the method comprises administering to an individual having such disease or disorder an effective amount of a NSP4 inhibitor (e.g., an anti-NSP4 antibody). In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent. In some embodiments, the disease or disorder mediated by granulocytes is selected from the group consisting of vascular disease and inflammatory disease. An “individual” according to any of the above embodiments may be a human. In any of the embodiments herein, the disease or disorder mediated by granulocytes can be a disease described herein.
In one aspect, a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use as a medicament is provided. In further aspects, a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use in treating neutrophil-mediated disease or disorder is provided. In certain embodiments, a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use in a method of treatment is provided. In certain embodiments, the invention provides a NSP4 inhibitor (e.g., an anti-NSP4 antibody) for use in a method of treating an individual having a neutrophil-mediated disease or disorder comprising administering to the individual an effective amount of the NSP4 inhibitor. In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent. In some embodiments, the neutrophil-mediated disease or disorder is selected from the group consisting of vascular disease and inflammatory disease. An “individual” according to any of the above embodiments is preferably a human. In any of the embodiments herein, the neutrophil-mediated disease or disorder can be a disease described herein.
In a further aspect, the invention provides for the use of a NSP4 inhibitor (e.g., an anti-NSP4 antibody) in the manufacture or preparation of a medicament. In one embodiment, the medicament is for treatment of a neutrophil-mediated disease or disorder. In a further embodiment, the medicament is for use in a method of treating a neutrophil-mediated disease or disorder comprising administering to an individual having the disease or disorder an effective amount of the medicament. In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent. In some embodiments, the neutrophil-mediated disease or disorder is selected from the group consisting of vascular disease and inflammatory disease. An “individual” according to any of the above embodiments may be a human. In any of the embodiments herein, the neutrophil-mediated disease or disorder can be a disease described herein.
In a further aspect, the invention provides a method for treating a neutrophil-mediated disease or disorder. In one embodiment, the method comprises administering to an individual having such disease or disorder an effective amount of a NSP4 inhibitor (e.g., an anti-NSP4 antibody). In one such embodiment, the method further comprises administering to the individual an effective amount of at least one additional therapeutic agent. In some embodiments, the neutrophil-mediated disease or disorder is selected from the group consisting of vascular disease and inflammatory disease. An “individual” according to any of the above embodiments may be a human. In any of the embodiments herein, the neutrophil-mediated disease or disorder can be a disease described herein.
Neutrophils, also known as polymorphonuclear leukocytes (PMN), are cells of the innate immune system that are involved in acute inflammation and phagocytosis of invading pathogens (e.g., bacteria). The anti-microbial activity of neutrophils is partially mediated by neutrophil serine proteases, such as neutrophil elastase, cathepsin G, and proteinase 3, which act intracellularly to destroy phagocytosed microorganisms or can be released by neutrophils to act extracellularly to contain and reduce pathogen proliferation at sites of infection. While neutrophil serine proteases that are released by neutrophils can serve a beneficial role in the innate immune system, these proteases may also contribute to the formation of neutrophil-mediated disease or disorders by causing, for example, aberrant tissue damage and inflammation. Studies have linked neutrophils as playing a contributory role in the pathology of several diseases such as, but not limited to, septic shock, acute respiratory distress syndrome, post-ischemic reperfusion, chronic obstructive pulmonary disease (COPD), rheumatoid arthritis, and cancer. See, e.g., Adams et al., J Trauma-Injury Infect Crit Care., 2001, 51:452-456; Lindsey et al., Circulation, 2001, 103:2181-2187; Wright et al., Rheumatology, 2010, 49(9):1618-1631; Magrone et al., Pharm Des., 2012, 18(12):1609-19; and Vaguliene et al., BMC Immunology., 2013, 6:14-36.
Neutrophil-mediated diseases or disorders include diseases characterized by inflammation (e.g., acute inflammation and/or chronic inflammation), increased vascular permeability, tissue damage, and/or other inflammatory processes in which neutrophils are known to play a role. In some embodiments, a neutrophil-mediated disease or disorder is a vascular disease selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, and cerebral ischemia. In some embodiments, a neutrophil-mediated disease or disorder is an inflammatory disease selected from the group consisting of acute lung injury, asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis (e.g., juvenile rheumatoid arthritis), and septic shock. In some embodiments, a neutrophil-mediated disease or disorder is a pulmonary disease selected from the group consisting of COPD, chronic bronchitis, pulmonary emphysema, α-1 anti-trypsin deficiency, cystic fibrosis, idiopathic pulmonary fibrosis, and ARDS. In some embodiments, a neutrophil-mediated disease or disorder is an autoimmune disease such as, but not limited to, systemic lupus erythematosus (SLE), autoimmune vasculitides, and blistering skin diseases. In some embodiments, the neutrophil-mediated disease or disorder is a cancer such as, but not limited to, lung cancer, breast cancer, colon cancer, lymphoma, pancreatic cancer, and brain cancer. In some embodiments, the cancer is metastatic cancer. In some embodiments, a neutrophil-mediated disease or disorder is a disease caused by a deficiency in a natural (i.e., host) protease inhibitor (e.g., a serine protease inhibitor) such as, but not limited to, α-1 anti-trypsin, antithrombin, C1 inhibitor, secretory leukocyte protease inhibitor, monocyte-neutrophil elastase inhibitor, and α1-antichymotrypsin.
Granulocytes include neutrophils, eosinophils, and basophils. In some embodiments, the methods or medicaments described herein are useful for treating or preventing a disease or disorder mediated by granulocytes. For example, the disease or disorder that can be treated or prevented includes vascular diseases, inflammatory diseases, and autoimmune diseases. In some embodiments, the disease or disorder is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, anaphylaxis, systemic anaphylaxis, allergic lung inflammation, asthma (e.g., allergic asthma, virus-induced asthma), chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases (e.g., bullous pemphigoid), inflammatory skin diseases (e.g., atopic dermatitis, urticarial, eosinophilic cellutitis), cancer (e.g., lung cancer), kidney diseases (e.g., glomerulonephritis), osteoarthritis, rheumatoid arthritis, psoriatic arthritis, psoriasis, septic shock, inflammatory bowel disease (e.g., ulcerative colitis, Crohn's disease).
In a further aspect, the invention provides pharmaceutical compositions or formulations comprising any of the NSP4 inhibitors provided herein, e.g., for use in any of the above therapeutic methods. In one embodiment, a pharmaceutical composition or formulation comprises any of the NSP4 inhibitors (e.g., anti-NSP4 antibodies) provided herein and a pharmaceutically acceptable carrier. In another embodiment, a pharmaceutical composition or formulation comprises any of the NSP4 inhibitors provided herein and at least one additional therapeutic agent, e.g., as described below.
NSP4 inhibitors described herein can be used either alone or in combination with other agents in a therapy. For instance, a NSP4 inhibitor described herein may be co-administered with at least one additional therapeutic agent. Such combination therapies encompass combined administration (where two or more therapeutic agents are included in the same or separate formulations), and separate administration, in which case, administration of the antibody of the invention can occur prior to, simultaneously, and/or following, administration of the additional therapeutic agent and/or adjuvant.
A NSP4 inhibitor described herein (and any additional therapeutic agent) can be administered by any suitable means, including parenteral, intrapulmonary, and intranasal, and, if desired for local treatment, intralesional administration. Parenteral infusions include intramuscular, intravenous, intraarterial, intraperitoneal, or subcutaneous administration. Dosing can be by any suitable route, e.g. by injections, such as intravenous or subcutaneous injections, depending in part on whether the administration is brief or chronic. Various dosing schedules including but not limited to single or multiple administrations over various time-points, bolus administration, and pulse infusion are contemplated herein.
NSP4 inhibitors (e.g., antibodies) described herein would be formulated, dosed, and administered in a fashion consistent with good medical practice. Factors for consideration in this context include the particular disorder being treated, the particular mammal being treated, the clinical condition of the individual patient, the cause of the disorder, the site of delivery of the agent, the method of administration, the scheduling of administration, and other factors known to medical practitioners. The NSP4 inhibitor need not be, but is optionally formulated with one or more agents currently used to prevent or treat the disorder in question. The effective amount of such other agents depends on the amount of NSP4 inhibitor present in the formulation, the type of disorder or treatment, and other factors discussed above. These are generally used in the same dosages and with administration routes as described herein, or about from 1 to 99% of the dosages described herein, or in any dosage and by any route that is empirically/clinically determined to be appropriate.
For the prevention or treatment of disease, the appropriate dosage of a NSP4 inhibitor (e.g., an anti-NSP4 antibody) (when used alone or in combination with one or more other additional therapeutic agents) will depend on the type of disease to be treated, the type of NSP4 inhibitor, the severity and course of the disease, whether the NSP4 inhibitor is administered for preventive or therapeutic purposes, previous therapy, the patient's clinical history and response to the treatment, and the discretion of the attending physician. The NSP4 inhibitor is suitably administered to the patient at one time or over a series of treatments.
For example, depending on the type and severity of the disease, about 1 μg/kg to 15 mg/kg (e.g. 0.1 mg/kg-10 mg/kg) of a NSP4 inhibitor (e.g., an anti-NSP4 antibody) can be an initial candidate dosage for administration to the patient, whether, for example, by one or more separate administrations, or by continuous infusion. One typical daily dosage might range from about 1 μg/kg to 100 mg/kg or more, depending on the factors mentioned above. For repeated administrations over several days or longer, depending on the condition, the treatment would generally be sustained until a desired suppression of disease symptoms occurs. One exemplary dosage of the NSP4 inhibitor (e.g., an anti-NSP4 antibody) would be in the range from about 0.05 mg/kg to about 10 mg/kg. Thus, one or more doses of about 0.5 mg/kg, 2.0 mg/kg, 4.0 mg/kg or 10 mg/kg (or any combination thereof) may be administered to the patient. Such doses may be administered intermittently, e.g. every week or every three weeks (e.g. such that the patient receives from about two to about twenty, or e.g. about six doses of the antibody). An initial higher loading dose, followed by one or more lower doses may be administered. However, other dosage regimens may be useful. The progress of this therapy is easily monitored by conventional techniques and assays.
In another aspect of the invention, an article of manufacture or a kit comprising one or more of the NSP4 inhibitors (e.g., anti-NSP4 antibodies) useful for the treatment, prevention and/or diagnosis of the disorders described above is provided. The article of manufacture or kit may further comprise a container and a label or package insert on or associated with the container. Suitable containers include, for example, bottles, vials, syringes, IV solution bags, etc. The containers may be formed from a variety of materials such as glass or plastic. The container holds a composition which is by itself or combined with another composition effective for treating, preventing and/or diagnosing the condition and may have a sterile access port (for example the container may be an intravenous solution bag or a vial having a stopper pierceable by a hypodermic injection needle). At least one active agent in the composition is a NSP4 inhibitor described herein. The label or package insert indicates that the composition is used for treating the condition of choice. In some embodiments, the condition of choice is a disease or disorder mediated by granulocytes. In some embodiments, the disease or disorder to be treated is selected from the group consisting of stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, anaphylaxis, systemic anaphylaxis, allergic lung inflammation, asthma (e.g., allergic asthma, virus-induced asthma), chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases (e.g., bullous pemphigoid), inflammatory skin diseases (e.g., atopic dermatitis, urticarial, eosinophilic cellutitis), cancer (e.g., lung cancer), kidney diseases (e.g., glomerulonephritis), osteoarthritis, rheumatoid arthritis, psoriatic arthritis, psoriasis, septic shock, inflammatory bowel disease (e.g., ulcerative colitis, Crohn's disease). In some embodiments, the condition of choice is a neutrophil-mediated disease or disorder such as, but not limited to, stroke, diabetic retinopathy, edema, diabetic macular edema, hereditary angioedema, idiopathic angioedema, leakage of vasculature, cerebral ischemia, acute lung injury, asthma, chronic obstructive pulmonary disease (COPD), acute respiratory distress syndrome (ARDS), osteoarthritis, rheumatoid arthritis (e.g., juvenile rheumatoid arthritis), septic shock, chronic bronchitis, pulmonary emphysema, α-1 anti-trypsin deficiency, cystic fibrosis, idiopathic pulmonary fibrosis, systemic lupus erythematosus (SLE), autoimmune vasculitides, blistering skin diseases, cancer (e.g., lung cancer), a disease caused by a deficiency in a natural protease inhibitor (e.g., a serine protease inhibitor), or any other neutrophil-mediated disease or disorder described and contemplated herein. Moreover, the article of manufacture or kit may comprise (a) a first container with a composition contained therein, wherein the composition comprises a NSP4 inhibitor described herein; and (b) a second container with a composition contained therein, wherein the composition comprises a second therapeutic agent. The article of manufacture or kit in this embodiment of the invention may further comprise a package insert indicating that the compositions can be used to treat a particular condition. Alternatively, or additionally, the article of manufacture or kit may further comprise a second (or third) container comprising a pharmaceutically-acceptable buffer, such as bacteriostatic water for injection (BWFI), phosphate-buffered saline, Ringer's solution and dextrose solution. It may further include other materials desirable from a commercial and user standpoint, including other buffers, diluents, filters, needles, and syringes.
Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, the descriptions and examples should not be construed as limiting the scope of the invention.
The following are examples of methods and compositions of the invention. It is understood that various other embodiments may be practiced, given the general description provided above.
NSP4, a member of a family of neutrophil serine proteases characterized as trypsin-fold proteases, is stored in neutrophil azurophilic granules (Perera et al., J Immunol., 2013), yet it is the least abundant of all NSPs (Perera et al., Proc Natl Acad Sci USA, 2012, 109:6229-6234) and its function remains unknown. NSP4 is highly conserved from bony fish to human (
To investigate how NSP4 is able to achieve its arginine-specificity with an apparent elastase-like S1 pocket (
To produce human wild-type NSP4 for structural characterization, the DNA encoding human NSP4 from Ile34 (Ile16 in chymotrypsinogen numbering) to Ala283 was fused with an N-terminal His6-tag and enteropeptidase cleavage site and cloned into pAcGP67 vector (BD Biosciences). The resulting baculovirus transfer vector was confirmed by DNA sequencing and co-transfected with BaculoGold linearized DNA (BD Biosciences) into Sf9 insect cells, and amplified three times to generate a high titer viral stock. For protein production, cells were cultured in shake flasks or in wave bags (GE Healthcare) at 27° C. with ESF921 medium (Expression Systems) for 72 hours post-infection and removed by centrifugation. The resulting supernatant was supplemented with 1 mM NiCl2, 5 mM CaCl2, in 50 mM Tris-HCl, pH 7.5. The protein in the supernatant was captured on a Ni-NTA column (Qiagen) by gravity flow, washed with 200 ml wash buffer (50 mM Tris pH 7.5, 300 mM NaCl, 10 mM imidazole), and eluted with elution buffer (50 mM Tris pH 7.5, 300 mM NaCl, 300 mM imidazole). Protein was concentrated and further purified on a size exclusion column (Superdex 200 HiLoad 16/60, GE Biosciences) equilibrated with 20 mM Tris pH 7.5, 150 mM NaCl.
To produce NSP4 mutants for biochemical characterization, the DNA encoding the human NSP4 fragment from Ile34 to Ala283 was cloned with an N-terminal FLAG tag and C-terminal His6 tag in a modified pRK5 vector suitable for mammalian cell expression. The QuikChange mutagenesis kit (Agilent) was used to generate derivative expression constructs incorporating the desired single and double point mutants (in chymotrypsin numbering): F190A, S192A, S195A, S216G, F190A:S216G, and S192A:S216G. The constructs were expressed in Chinese Hamster Ovarian (CHO) cells by transient expression and after incubation the supernatant was harvested by centrifugation. The protein in the supernatant was captured on an anti-FLAG affinity resin by gravity flow, washed with 200 ml phosphate-buffered saline (PBS), eluted with elution buffer (50 mM sodium citrate pH 3.0, 150 mM NaCl), and immediately neutralized to pH 7 using 1M Tris pH 8.
Both insect cell-derived and CHO cell-derived NSP4 were activated using enteropeptidase (Invitrogen) at 15 EU/ml of protein, and incubated overnight at 20° C. Completion of the cleavage reaction was monitored by SDS-PAGE and Liquid chromatography-mass spectrometry (LC-MS). A secondary purification with ion exchange was performed to remove enteropeptidase and purify NSP4 to homogeneity with a MonoS column (GE Healthcare) using a gradient elution with 20 mM Tris pH 7.5 from 0.05 M to 1.0 M NaCl.
For apo-NSP4 and FFR:NSP4 crystals, insect cell-derived NSP4 was partially deglycosylated using Endo F3 at 1:100 Endo F3:NSP4 mass ratio in 100 mM sodium citrate pH 5.5, 300 mM NaCl for 3 hours at 37° C. and then overnight at 4° C. The deglycosylation reaction was verified using SDS-PAGE and LC-MS. For VLK:NSP4 crystals, the insect cell-derived NSP4 were fully glycosylated. To make FFR:NSP4 and VLK:NSP4 complexes, NSP4 was mixed with D-Phe-L-Phe-L-Arg-cmk (Bachem) or with D-Val-L-Leu-L-Lys-cmk (Bachem), respectively, at 20-fold molar excess for overnight at 20° C. The resulting FFR:NSP4 and VLK:NSP4 covalent complexes were verified using LC-MS. Apo-NSP4, FFR:NSP4, and VLK:NSP4 were all desalted using Superdex 5200 HiLoad 16/60 size exclusion chromatography column equilibrated using 20 mM Tris pH 7.5, 150 mM NaCl. The protein was concentrated to approximately 10 mg/ml and mixed 1:1 with the precipitant/buffer solution (mother liquor) for crystallization trials.
All crystals were obtained by sitting drop vapor diffusion method at 19° C., with the crystals appearing between 2 to 7 days. FFR:NSP4 crystallized in 20% PEG MME 2000, 0.1M Tris pH 8.5, 0.2M trimethylamine N-oxide. Apo-NSP4 (form 1) crystallized in 15-17% PEG-10,000, 0.1 M sodium acetate pH 4.4, 0.1 M ammonium acetate. Apo-NSP4 (form 2) crystallized in 22-25% PEG-3350, 0.1 M Bis-Tris pH 5.5, 0.2 M NaCl. VLK:NSP4 crystallized in 20% PEG-3350 0.2 M potassium acetate, with no additional buffer. The crystals were cryoprotected in mother liquor supplemented with 20% glycerol and flash frozen in liquid nitrogen.
Data collection experiments were performed using a synchrotron light source. Specifically, Apo (forms 1 and 2) and VLK-cmk datasets were collected at ALS beamline 5.0.1 at the wavelength of 0.9774 Å and temperature of 95 K (Advanced Light Source). The FFR-cmk dataset was collected at SSRL beamline 7-1 at the wavelength of 1.1271 Å and temperature of 100 K (Stanford Synchroton Radiation Light Source). Data was indexed and integrated using HKL2000 (Otwinowski et al., Methods in Enzymology, 1997, 276:307-326). The initial structure of NSP4 was solved using MrBUMP (Keegan et al., Acta Crystallogr D Biol Crystallogr, 2007, 63:447-457) to gain initial phases and rebuilt into maps created by simulated annealing using the PHENIX package (Adams et al., Acta Crystallogr D Biol Crystallogr, 2010, 66:213-221). The structures were refined using PHENIX with 97.0% (apo form 1), 95.4% (apo form 2), 96.5% (FFR-cmk), and 95.4% (VLK-cmk) of residues in the favored region of the Ramachandran plot and the rest in the allowed region. Data collection and refinement statistics are summarized in Table 2. All structural figures were generated using PyMol (Schrödinger, LLC).
Internally-quenched fluorogenic peptides with 7-methoxycourmain-4-acetate (Mca) and mini-PEG1 (8-amino-3,6-dioxaoctanoic acid) at the N-terminus and dinitrophenol (Dnp) attached to the penultimate lysine side chain near the C-terminus were synthesized using Fmoc solid-phase peptide synthesis (GenScript). The peptides were added to 50 nM NSP4 or 100 nM Factor Xa (Enzyme Research Laboratories) in 50 mM Tris pH 8.0, 150 mM NaCl, 2 mM CaCl2 at 37° C. Enzyme kinetic measurements were done using SpectraMax M5 (MolecularDevices) with the excitation at 328 nm and emission at 393 nm. Kinetic data were fitted using Prism5 (GraphPad Software) using the standard Michaelis-Menten kinetics model and a standard curve was generated to convert the rate of catalysis from the fluorescence measurements (RFU/s) to nanomolar products formed per second (nM/s). LC-MS was used to confirm the site of peptide cleavage using fluorogenic peptides that were incubated with 50 nM NSP4 or 200 nM Factor Xa in 50 mM Tris pH 8.0, 150 mM NaCl, 2 mM CaCl2 at 37° C. for 1 hour. The peptide fragments were separated on a 5-60% acetonitrile:water reverse-phase gradient before analysis on a time-of-flight mass spectrometer (Agilent).
Heparin binding was assessed using fluorescence polarization, where fluorescein-conjugated heparin (Invitrogen) was mixed with purified recombinant NSP4. Fluorescence polarization assays were performed in three independent measurements and read on a Victor 3 (Perkin Elmer) equipped with 485±30 nm excitation and 535±40 nm emission filters. To assess the reactions via electrophoretic mobility shift assay, an equal volume of 50% glycerol was added to NSP4:heparin mixture, which were then separated by polyacrylamide gel electrophoresis and fluorescence signal detected with a blue (488 nm) laser and a 526±20 nm emission filter using a Typhoon imager (GE Healthcare).
NSP4−/− mice were generated as previously described (Tang et al., Nat Biotechnol, 2010, 28:749-755) and backcrossed to C57/BL6 for more than 10 generations. Confirmation of NSP4 ablation and determination of neighboring protease gene expression in NSP4−/− mice were done using RT-PCR. RNA from total bone marrow cells of NSP4−/− mice or wild-type littermates were isolated using the RNeasy Mini kit (Qiagen) and the corresponding cDNA were synthesized using the iScript reverse transcriptase (Bio-Rad), all performed according to manufacturer instructions. qPCR were performed from cDNA samples using the TaqMan 2×PCR master mix (Applied Biosystems) with the following TaqMan primer/probe sets were obtained from Applied Biosystems, with the catalogue number in parenthesis: Prss57_1 (ABI Mm01144794_m1, spans exons 1-2), Prss57_2 (ABI Mm01144795_m1, spans exons 2-3), Prss57_3 (ABI Mm01144796_m1, spans exons 3-4), Cfd (ABI Mm01143935_g1, spans exons 4-5), Elane (ABI Mm01168928_g1, spans exons 1-2), Gzmm (ABI Mm00493150_m1, spans exons 2-3), Prtn3 (ABI Mm00478323_m1, spans exons 1-2), 18s rRNA (ABI 4333760F).
To quantify immune cell populations, cells from the femoral bone marrow of NSP4−/− mice or wild-type littermates were identified using standard flow cytometry protocols and the following antibody clones: anti-CD11b (M1/70); anti-CD11c (N418); anti-B220 (RA3-6B2); anti-Ly6C (HK1.4), anti-Ly6G (1A8). All antibodies were obtained from eBioscience. Viability was evaluated using Sytox Blue (Invitrogen). Stained cells were sorted using a FACSAria cell sorter (BD Biosciences). The following populations were sorted and counted: B cells, B220+; total myeloid cells, B220−/CD11b+; monocytes, B220−/CD11b+/Ly6Chi, and neutrophils, B220−/CD11b+/Ly6Ghi.
K/B×N serum-induced vascular permeability was monitored in vivo by non-invasive near-infrared fluorescence imaging (NIRF) of the mouse whole-paw. Mice were anesthetized by 2% isoflurane (Butler Schein, 1 L/min flow), implanted with a tail vein catheter, and immobilized with the paw secured by surgical tape on the imaging surface glass of the Kodak In-Vivo FX Pro 400 whole-animal NIRF imaging system (Carestream Health). Mice were injected through the tail vein catheter with 100 μl of the blood pool probe AngioSense 680 (PerkinElmer), imaged at 1 minute intervals (650 nm excitation/700 nm emission, 21.4 mm FOV, 10 second exposure, 2× binning) for 5 min to establish baseline fluorescence before tail vein catheter injection of 75 ul K/B×N serum and further imaging for another 25 min. The K/B×N serum used in this model was sourced from KRN×NOD F1 mice that exhibited severe arthritis. The average fluorescence intensities and the fold change in fluorescence intensities from the initial imaging time point within paws were quantified using custom routines in MatLab (MathWorks).
Arthritis was assessed daily for 8 days following vascular permeability analysis. Clinical scores range from 0 to 16 per animal, as assigned by combining the individual paw scores of 0 (normal joint appearance) to 4 (maximal erythema and edema). The following joints were analyzed for erythema and edema: tarsal or carpal joints, metatarsal or metacarpal joints, metatarsalphalangeal or metacarpalphalangeal joints, or phalanges.
Paws were fixed in neutral buffered formalin, decalcified and processed routinely to sagittal hemisections stained with hematoxylin and eosin. All 4 paws per animal were examined. Histological lesions were scored on an arbitrary scale from 0 (normal) to 5 (severe) for the following features: infiltration with inflammatory cells, fibroplasia including pannus formation, cartilage injury, and bone remodeling.
The ability of NSP4 to recognize a P1-arginine residue was investigated, particularly in light of the F190 and S216 residues in the NSP4 S1 binding pocket that appear poised to obstruct arginine binding (
To elucidate the structural basis of the P1-arginine recognition mechanism, the X-ray crystal structure of NSP4 was determined with the covalently bound substrate mimic D-Phe-L-Phe-L-Arg chloromethyl ketone (FFR-cmk) at 1.40 Å resolution. In addition, two non-isomorphous structures of NSP4 in its apo-form at 2.55 Å and 2.70 Å resolutions (Table 2) were determined. All structures exhibited the double β-barrel and catalytic triad arrangement characteristic of trypsin-fold serine proteases (
The structural details of the active site revealed an unprecedented mechanism by which the substrate P1-arginine was recognized and concurrently explained the NSP4 conundrum. The structures show that the canonical S1 pocket was non-existent, as it is completely occluded by F190 and S216 (
Despite NSP4's poor activity towards P1-lysine (P1-Lys) substrates, it was possible to prepare a complex of NSP4 with the covalently bound lysine substrate mimic D-Val-L-Leu-L-Lys (VLK)-cmk and obtain a crystal structure at 3.08 Å resolution. It showed that the P1-lysine side chain adopted a conformation like that of P1-arginine (
NSP4 Processed Substrates with Modified Arginines
In an orthogonal approach to validate the unique NSP4 active site, NSP4's activity towards peptide substrate with modified P1 arginine was examined. The naturally occurring arginine-derivative methylarginine is resistant to cleavage by trypsin-like proteases because the methylarginine side chain cannot be spatially accommodated inside the narrow S1 pocket (Baldwin et al., Science, 1971, 171:579-581; Asami et al., Bioorg Med Chem Lett, 2012, 22:6328-6332). This structural limitation did not apply to NSP4. Because the P1-arginine guanidinium group was solvent-exposed on NSP4, it was reasoned that NSP4 could accommodate modifications to the arginine guanidinium group such as an extra methyl group. Enzymatic assays with peptidic substrates demonstrated that NSP4 could indeed cleave after methylarginine, whereas the trypsin-like protease, factor Xa, with a canonical S1 pocket could only cleave unmodified P1-Arg substrate (
As a first step towards exploring the in vivo function of NSP4, the possible role of NSP4 in inflammation using the neutrophil-dependent K/B×N serum transfer arthritis model was investigated (Monach et al., Curr Protoc Immunol, 2008, Chapter 15:Unit 15.22). NSPs have been previously implicated in inflammatory arthritis, but required the combined deficiency of both NE and CG to achieve full protection in experimental arthritis models, suggesting functional redundancy among NSPs. However, given the unique arginine specificity of NSP4 and its evolutionary status, it was surmised that NSP4 might have essential functions in neutrophil-mediated inflammatory processes. To investigate the role of NSP4 in inflammation, NSP4-deficient mice were generated as previously described (Tang et al., Nat Biotechnol, 2010, 28:749-755) (
One major hallmark of the K/B×N model is the rapid onset of localized vascular edema in the mouse paws following intravenous K/B×N serum administration (Binstadt et al., Nat Immunol, 2006, 7:284-292). To monitor vascular leakage, a near-infrared fluorescence vascular probe was administered to both NSP4-deficient and wild-type mice 5 minutes prior to K/B×N serum injection and then visualized and quantified the subsequent vascular permeability changes by in vivo near-infrared fluorescence imaging (
The initial induction of vascular leakage after K/B×N serum transfer in wild-type mice was followed by the development of erythema and edema, whereas NSP4−/− mice remained significantly protected during the 8-day post-induction period (
A panel of antibodies were generated and characterized for specificity against NSP4. Residues were numbered using the Kabat system (Kabat et al., Sequences of proteins of immunological interest, 5th Ed., Public Health Service, National Institutes of Health, Bethesda, Md. (1991)).
Recombinant human NSP4 and mouse NSP4 were generated as antigens for library sorting. NSP4 was produced as an inactive zymogen by engineering a cleavable epitope tag at the protein N-terminus to prevent premature activation and thus reduce cellular toxicity and increase protein expression in heterologous expression systems. A total of four NSP4 antigens were generated: human zymogen (hZ), human active (hA), mouse zymogen (mZ), and mouse active (mA). The hZ NSP4 was expressed in insect cells and purified by N-terminal 6His-tag using immobilized metal affinity chromatography. The mZ NSP4 was expressed in CHO cells and purified by N-terminal FLAG tag using anti-FLAG affinity chromatography. Both the hZ and mZ NSP4s were further purified using Superdex 200 size exclusion chromatography (GE Healthcare) and MonoS cation exchange chromatography (GE Healthcare). The catalytically active forms of these NSP4 (hA and mA) were generated by treating the purified zymogen forms (hZ and mZ) with EKmax enteropeptidase (Invitrogen) to remove the N-terminal epitope tag and were subsequently purified over another MonoS cation exchange chromatography (GE Healthcare) to homogeneity. Cleavage occurred on the C-terminal side of lysine following the amino acid sequence Asp-Asp-Asp-Asp-Lys. These four NSP4 antigens (hZ, hA, mZ, and mA) were used in parallel for phage library sorting and for screening conformational-specific and species-specific anti-NSP4 antibodies (
Phage-displayed synthetic antibody libraries were generated using oligonucleotide-directed mutagenesis in the three heavy chain complementarity-determining regions (CDRs) on a modified h4D5-encoding phagemid, pV0350-4, as template, and described as Lib-3 (see Lee et al., 2004. J Mol Biol 340:1073-1093). For initial selection with the naïve libraries, hZ-, hA-, mZ, and mA-NSP4 were each immobilized separately on Maxisorp immunoplates (Nunc) and phage libraries were cycled through 4 rounds of binding selection (see Lee et al., J Mol Biol, 2004, 340:1073-1093) under high salt conditions in phosphate buffered saline supplemented with 1% BSA or casein (BSA at rounds 1 and 3, casein at rounds 2 and 4), 0.1% Tween-20, and an additional 0.5 M NaCl to reduce non-specific interaction between the positively charged NSP4 proteins and the negatively charged phage particles. Random clones selected from rounds 3 and 4 were picked and assayed to identify specific binders using phage enzyme-linked immunosorbent assay (ELISA). The VH regions of selected clones that bound to NSP4 were amplified by polymerase chain reaction (PCR) for sequencing.
Phage clones were propagated from single colonies by growing in 30 ml 2YT culture supplemented with carbenicillin and KO7 helper phage overnight at 30° C., purified, and assayed as described (see Lee et al., J Mol Biol, 2004, 340:1073-1093). Phage at sub-saturating concentrations were first incubated with increasing concentrations of target NSP4 antigen (either hZ, hA, mZ, or mA) for 1 to 2 hour(s), and then transferred to wells coated with the same NSP4 antigen to capture the unbound phage. The amount of phage bound was measured with anti-M13 antibody-horseradish peroxidase (HRP) conjugate (GE Healthcare), developed using the substrate tetramethylbenzidine (TMB) (Kirkegaard and Perry Laboratories) for approximately 5 min, quenched with 1.0 M H3PO4, and read with a spectrophotometer at 450 nm wavelength as previously described (see Lee et al., J Mol Biol, 2004, 340:1073-1093). Inhibitory concentration (IC50) values were calculated as the concentration of soluble antigen that inhibited 50% of the phage binding to the immobilized antigen.
To generate IgG proteins for characterization, the variable domains of selected phage clones were cloned into pRK5-based plasmid with human light chain or heavy chain (human IgG1) constant domain for transient IgG expression in Chinese hamster ovary (CHO) cells, and purified using protein A affinity chromatography.
Biolayer interferometry measurements (ForteBio) were used to determine the affinity of anti-NSP4 antibodies against all four NSP4 antigens (hZ-, hA-, mZ-, and mA-NSP4). 5 μg/ml of each anti-NSP4 candidate was immobilized onto anti-human Fc sensors, and incubated with increasing concentrations of each NSP4 antigens to obtain affinity measurements. These antibody candidates were then binned to one of the following categories: 1) Conformation and species-specific: binds to either hZ, hA, or mA (no mZ-specific binders were identified); 2) Conformation-specific: binds to active (hA/mA) or zymogen (hZ/mZ) forms of NSP4; 3) Species-specific: binds to human (hZ/hA) or mouse (mZ/mA) forms of NSP4; and 4) Pan-NSP4: binds to all four forms of NSP4 (hZ/hA/mZ/mA).
NSP4 fluorogenic activity assay was devised by screening a panel of internally-quenched fluorogenic peptide substrates (see Eigenbrot et al., Structure, 2012, 20:1040-1050) with NSP4. 50 nM of NSP4 was incubated with 2.5 uM of each fluorescence-quenched peptide substrate in 50 mM Tris pH 8.0, 200 mM NaCl, and 0.25% w/w CHAPS and the fluorescence intensity determined using the SpectraMax M5 spectrophotometer (MolecularDevices) with excitation at 328 nm and emission at 393 nm. The peptide substrate cleaved most efficiently by NSP4 was Mca-Ile-Arg-Arg-Ser-Tyr-Ser-Phe-Lys[Dnp]-Lys, where Mca is 7-methoxycoumarin-4-acetate and Dnp is dinitrophenol. Incubation with NSP4 resulted in a specific cleavage resulting in two distinct fragments: Mca-Ile-Arg-Arg and Ser-Tyr-Ser-Phe-Lys[Dnp]-Lys.
To identify blocking anti-NSP4 antibody candidates, 10 nM of recombinant human or mouse NSP4 was incubated with 500 nM of each antibody candidate for 30 min at 37° C. This NSP4:antibody mixture was then mixed with 6.7 uM of the fluorogenic peptide substrate, incubated for 5 min at 37° C., and then read on the SpectraMax M5 spectrophotometer using the parameters described above.
Three antibody candidates that strongly bound to NSP4 during heavy chain variable domain (VH) library panning were isolated and used to generate IgG1 antibodies for further characterization (
Antibodies against human NSP4 can be generated using the methods described herein.
Both mRNA and protein expression levels for NSP4 were measured in various mouse cell types to profile the cell types for the presence of NSP4.
RT-qPCR Measurement of NSP4 mRNA Levels.
To quantify the mRNA expression levels of NSP4 in immune cell populations from mouse femoral bone marrow, RT-qPCR analysis was performed. Immune cell populations from mouse femoral bone marrow were identified using standard flow cytometry protocols and the following antibody clones: anti-CD11b (M1/70); anti-CD11c (N418); anti-B220 (RA3-6B2); (BM8); anti-Ly6C (HK1.4); anti-Ly6G (1A8); anti-Siglec F (E50-2440). All antibodies were obtained from eBioscience. Viability was evaluated using Sytox Blue (Invitrogen). Stained cells were sorted using a BD Biosciences FACSAria cell sorter. The following populations were sorted for downstream analysis: B cells, B220+CD11b−; Monocytes, Ly6C+CD11b+; Neutrophils, Ly6G+CD11b+; Eosinophils, Siglec F+CD11b+. Total RNA content was isolated from each cell type using RNeasy Mini kit (Qiagen) and the corresponding cDNA were synthesized using the iScript reverse transcriptase (Bio-Rad), all performed according to manufacturer instructions. qPCR measurements were performed from cDNA samples using the TaqMan 2×PCR master mix (Applied Biosystems) with the following three NSP4/Prss57 primer/probe sets (Applied Biosystems): Prss57_1 (ABI Mm01144794_m1), Prss57_2 (ABI Mm01144795_m1), and Prss57_3 (ABI Mm01144796_m1). Gene expression levels are expressed as 2̂(−dCt) relative to mouse 18S rRNA control.
Western blot detection of NSP4 protein. To measure for the presence of NSP4 protein in immune cell populations from mouse femoral bone marrow, Western blot analysis was performed using rabbit anti-mouse NSP4 polyclonal antibody. Bone-marrow derived neutrophils were isolated from total bone marrow cells using the mouse neutrophil negative selection kit (Miltenyi Biotec) as performed according to manufacturer instructions. Bone marrow-derived eosinophils were isolated and cultured from bone marrow cells as described in Dyer et al., 2008. J Immunol 181(6):4004-4009. Bone marrow-derived mast cells were isolated and cultured from bone marrow cells as described in Lukacs et al., 1996, Blood 87(6):2262-2268. Bone marrow-derived macrophages were isolated from bone marrow cells as described in Zhang et al., 2008. Curr Protoc Immunol, Unit 14.1. Cell lysates were generated using SDS-Laemmli sample buffer (Bio-Rad) and the concentrations were determined using BCA protein assay (Pierce).
RT-qPCR Measurement of NSP4 mRNA Levels.
RT-qPCR analysis was performed to measure the mRNA expression levels of NSP4 in immune cell populations isolated from mouse femoral bone marrow. RT-qPCR measurements using three different NSP4/Prss57 primer/probe sets that span three different exon junctions corroborate NSP4 mRNA expression levels in B cells, neutrophils, eosinophils, and monocytes (
Western Blot Detection of NSP4 Protein.
Western blot analysis was performed using a rabbit anti-mouse NSP4 polyclonal antibody to measure the protein expression levels of NSP4 in neutrophils, eosinophils, mast cells and macrophages isolated and cultured from mouse femoral bone marrow (
In order to confirm the lack of neutrophil joint infiltration in NSP4−/− mice, neutrophil recruitment was monitored by luminol-based bioluminescence imaging in wild-type and NSP4−/− mice.
Luminol-Bioluminescence Imaging of Neutrophil Myeloperoxidase Activity in Mouse Paws.
Myeloperoxidase (MPO) activity was monitored in vivo through non-invasive bioluminescence imaging (BLI) of the mouse paws. Mice were anesthetized by 2% isoflurane (Butler Schein, 1 L/min flow), implanted with a tail vein catheter, and positioned on a heated stage inside the Photon Imager (Biospace Lab, Paris, France). Mice were injected through the tail vein catheter with a cocktail of 75 ul K/B×N serum and 150 ul MPO-sensitive luminol (Sigma-Aldrich). Light emission was recorded over 8 minutes post injection of the cocktail at 5 minute, 6 hour, and 24 hour intervals for each mouse. Bioluminescent pseudo-color images were shown superimposed on a gray-scale bright field image of the mouse, with the most intense signal being red and weakest signal blue. For quantitative analysis of the luminol signal, an elliptical region of interest (ROI) was drawn on the bioluminescent images over all four paws. The area of the ROI was kept constant and results expressed as photon counts per minute per cm2 using the M3 Vision software (Biospace Lab).
To verify the expression of myeloperoxidase in NSP4-deficient mice, neutrophils from femoral bone marrow were isolated using the mouse neutrophil isolation kit (Miltenyi Biotec), and total cell lysates were made using 2× Laemmli buffer (Bio-Rad). Myeloperoxidase and actin were detected using anti-myeloperoxidase mouse monoclonal antibody (clone 392105; R&D Biosystems) and anti-beta-actin mouse monoclonal antibody (clone 8H10D10; Cell Signaling Technology), respectively.
Luminol-based bioluminescence imaging of neutrophil myeloperoxidase (MPO) activity was performed to image neutrophils in mouse paws (
Antibody clones 3-5 and 5-1 were affinity matured by optimizing their antibody light chain sequence to bind with higher affinity to NSP4.
Library Construction for Affinity Improvement of Clones 3-5 and 5-1 Derived from the VH Library.
Antibody clones Ab 3-5 (abbreviated Ab35) and Ab 5-1 (abbreviated Ab51) were selected for further affinity improvement. Phagemid pW0703 (derived from phagemid pV0350-2b (Lee et al., J. Mol. Biol 340, 1073-1093 (2004)), containing stop codon (TAA) in all CDR-L3 positions and displaying monovalent Fab on the surface of M13 bacteriophage served as the library template for grafting heavy chain variable domains (VH) of clones of interest from the VH library for affinity maturation. Both hard and soft randomization strategies were used for affinity maturation. For hard randomization, one light chain library with selected positions of the three light chain CDRs was randomized using amino acids designed to mimic natural human antibodies and the designed DNA degeneracy was as described in Lee et al. (J. Mol. Biol 340, 1073-1093 (2004)). For soft randomization, residues at positions 91-96 of CDR-L3, 30-33, 35 of CDR-H1, 50, 52, 53-54, 56, and 58 of CDR-H2, 95-100, 100A, and 100C of CDR-H3, were targeted; and three different combinations of CDR loops, H1/L3, H2/L3, and H3/L3, were selected for randomization. To achieve the soft randomization conditions, which introduced the mutation rate of approximately 50% at the selected positions, the mutagenic DNA was synthesized with 70-10-10-10 mixtures of bases favoring the wild type nucleotides (Gallop et al., Journal of Medicinal Chemistry 37:1233-1251 (1994)).
Phage Sorting Strategy to Generate Affinity Improvement.
For affinity improvement selection, phage libraries were subjected to one round of plate sorting followed by three additional rounds of solution sorting with increasing stringency. For round one, plate sorting strategy was used, where 3 OD/ml in 1% BSA and 0.05% Tween 20 of phage input were incubated with 5 ug/ml of mouse NSP4 at 100 ul/well buffer containing 1% BSA and 0.05% Tween-20 for 1.5 h at room temperature with gentle shaking. The wells were washed with PBS-0.05% Tween-20 ten times. Bound phage was eluted with 150 μl/well 50 mM HCl, 500 mM KCl for 30 minutes, and subsequently neutralized by 50 μl/well of 1M Tris pH 8, titered, and propagated for the next round. For rounds two through four, solution sorting strategies were used with increasing selection stringency. Specifically, biotinylated mouse NSP4 were used at 20 nM (round 2), 5 nM (round 3), and 0.5 nM with 500 nM unlabeled mNSP4 competitor (round 4) to select for improved on-rate and off-rate binders. To determine background binding, control wells containing phage were captured on neutravidin-coated plates. Bound phage captured on neutravidin-coated wells was eluted with 150 μl/well 50 mM HCl, 500 mM KCl for 30 minutes, and subsequently neutralized by 50 μl/well of 1M Tris pH8, titered, and propagated for the next round.
Epitope Mapping.
Recombinant mouse NSP4 was preincubated with buffer alone, NSP4 antibody 5-1 (Fab format), or with 10 ug/ml heparin sulfate (Sigma Aldrich) for 15 minutes at room temperature in phosphate buffered saline. 50 nM of this mouse NSP4 mixture was then incubated with optical sensors coated with NSP4 antibodies that were immobilized at 40 ug/ml in 1× Kinetic Buffer (Pall Corporation). The binding was measured using Octet biolayer interferometry (Pall Corporation).
Multiple antibody clones were tested in a phage IC50 experiment to estimate their binding affinity to NSP4. Briefly, 2 ug/ml of NSP4 (hZ, hA, mZ, or mA variants) was coated on wells overnight at 4° C. in PBS supplemented with 0.5% BSA. Each individual phage clone (at 0.01 OD/ml) was purified and incubated with increasing concentrations of soluble NSP4 protein for 2 h at room temperature before being placed into wells coated with immobilized NSP4 protein for 15 min at room temperature. The wells were then washed with PBS supplemented with 0.05% Tween-20 for 10 times and developed using anti-M13 phage antibody conjugated with HRP (New England Biolabs). As shown in
These antibodies were further characterized using biolayer interferometry measurements to estimate affinity (kD) to different NSP4 proteins (i.e., hZ, hA, mZ, and mA, as labeled).
Antibodies were further tested for the ability to block NSP4 enzymatic activity. The ability to block human and mouse NSP4 was tested.
Without wishing to be bound to theory, it was hypothesized that the 5-series antibodies, due to their ability to block NSP4 enzyme activity and their preferential binding to the active form but not the zymogen form of NSP4, bound NSP4 proximal to the enzyme active site, a region that undergoes significant conformational change during the protease activation process. In contrast, it was hypothesized that the 3-series antibodies, due to their inability to block NSP4 enzyme activity and their conformational-insensitivity, bound NSP4 distal to the enzyme active site. This hypothesis on antibody epitopes was confirmed in a series of experiences depicted in
As shown in
Antibody clones 3-5 (referred to as Ab35 below) and 5-1 (referred to as Ab51 below) were chosen for further affinity improvement (carried out as described above). Ab35 was chosen due to its ability to bind to both human and mouse NSP4 and both zymogen and active conformations. Ab51 was chosen for its ability to inhibit mouse NSP4 catalytic activity with highest potency among the 5-series antibodies.
Tables 5 and 6 list affinity matured variants of antibody 3-5 (called 35.WT in the tables below), labeled as 35.XX, and affinity matured variants of antibody 5-1 (called 51.WT in the tables below), labeled as 51.XX. Heavy chain HVR sequences are listed in Table 5; light chain HVR sequences are listed in Table 6.
Table 7 lists heavy chain and light chain variable region sequences for affinity matured variants of antibody 3-5 (called 35.WT in the table below), labeled as 35.XX, and affinity matured variants of antibody 5-1 (called 51.WT in the table below), labeled as 51.XX. Constant region sequences are provided below the table.
GFTFSDNDISWVRQAPGKGLEWVG
SISPDNGDTNYADSVKGRFTISADTS
DDVPAVFTSAMDYWGQGTLVTVSS
GFTFSDNDISWVRQAPGKGLEWVG
SISPDNGDTNYADSVKGRFTISADTS
DDVPAVFTSAMDYWGQGTLVTVSS
GFTFSDNDISWVRQAPGKGLEWVG
SISPDNGDTNYADSVKGRFTISADTS
DDVPAVFTSAMDYWGQGTLVTVSS
GFTFSDNDISWVRQAPGKGLEWVG
SISPDNGDTNYADSVKGRFTISADTS
DDVPAVFTSAMDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
KRHLHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
KSLFHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WIPTAGGNTYYADSVKGRFTISADT
KSLFHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
KSLFHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
GLFHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
VFFHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
KSLFHNVAFDYWGQGTLVTVSS
GFTFSGSGIHWVRQAPGKGLEWVA
WISPTGGNTYYADSVKGRFTISADT
GLFHNVAFDYWGQGTLVTVSS
The improvement of affinity-matured antibody clones was estimated in a series of phage IC50 experiments.
Table 9 summarizes improvement of affinity-matured antibody clones as determined by their IC50 values in a phage competition binding assay.
Ab35 and Ab51 were affinity improved up to 2.7-fold and 504.6-fold, respectively, over their parental clones by exploring and optimizing the CDR sequences on the antibody light chain for binding to NSP4. Both affinity matured Ab35 and Ab51 clones reached the targeted picomolar-affinity to NSP4 and bound to NSP4 with distinct epitopes. Without wishing to be bound to theory, it is thought that Ab35-derived clones bind to NSP4 at the heparin-binding site and Ab51-derived clones bind to NSP4 proximal to its enzyme active site.
To confirm that the enzymatic activity of NSP4 is associated with the disease phenotype observed in the K/B×N serum-transfer mouse model, the K/B×N model is compared in mice having wild-type NSP4, an NSP4 knockout and a catalytically dead NSP4 knockin (e.g., mice having an S224A mutation in their NSP4 protein sequence). In each of these three mouse strains, serum-induced vascular permeability is monitored in vivo using NIRF, luminol-bioluminescence imaging and histological examination. If the mouse expressing the catalytically dead NSP4 protein shows protection in the K/B×N model similar to the NSP4 knockout mouse, this result may indicate that the catalytic activity of NSP4 is associated with the disease phenotype and that inhibitors of NSP4 catalytic activity (e.g., an anti-NSP4 antibody such as antibody 51.WT, 51.30, 51.50, 51.51, 51.59, 51.72, 51.82) would be useful as therapeutic agents for various vascular and inflammatory disorders associated with NSP4 activity.
Anti-NSP4 antibodies are tested in a mouse K/B×N model to confirm that antibody inhibition of NSP4 activity is protective of the disease phenotype observed in the wildtype NSP4 K/B×N model. K/B×N mice are challenged as described above either in the presence or absence of an anti-NSP4 antibody. NSP4 antibodies that either bind to the heparin binding site (e.g., the 35 series antibodies 35.WT, 35.14, 35.50, 35.62 and/or 35.77) or inhibit the catalytic activity of NSP4 (the 51 series antibodies 51.WT, 51.30, 51.50, 51.51, 51.59, 51.72, and/or 51.82) are tested in the K/B×N model. The results are compared to a control antibody (e.g., an antibody that does not bind to NSP4). If the mice treated with the anti-NSP4 antibodies show protection in the K/B×N model similar to the NSP4 knockout mouse, this result may indicate that the inhibition of NSP4 using an anti-NSP4 antibody would be useful as a therapeutic agent for various vascular and inflammatory disorders associated with NSP4 activity.
Although the foregoing invention has been described in some detail by way of illustration and example for purposes of clarity of understanding, the descriptions and examples should not be construed as limiting the scope of the invention. The disclosures of all patent and scientific literature cited herein are expressly incorporated in their entirety by reference.
This application claims the priority benefit of U.S. Provisional Application Ser. No. 61/890,147, filed Oct. 11, 2013; 61/893,059, filed Oct. 18, 2013; and 62/053,052, filed Sep. 19, 2014; each of which is incorporated herein by reference in its entirety.
| Number | Date | Country | |
|---|---|---|---|
| 62053052 | Sep 2014 | US | |
| 61893059 | Oct 2013 | US | |
| 61890147 | Oct 2013 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | 15094843 | Apr 2016 | US |
| Child | 15958977 | US |
| Number | Date | Country | |
|---|---|---|---|
| Parent | PCT/US2014/060182 | Oct 2014 | US |
| Child | 15094843 | US |
